Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF4	7293	broad.mit.edu	37	1	1149457	1149457	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:1149457G>A	uc001ade.2	-	1	56	c.51C>T	c.(49-51)CTC>CTT	p.L17L	TNFRSF4_uc001adf.2_5'UTR	NM_003327	NP_003318	P43489	TNR4_HUMAN	tumor necrosis factor receptor superfamily,	17					immune response|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of immunoglobulin secretion|T cell proliferation	integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GGCCCAGGAGGAGCAGAGCCG	0.701													4	14					0	0	0.00024832	0	0
SCNN1D	6339	broad.mit.edu	37	1	1222346	1222346	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:1222346G>A	uc001adu.1	+	7	1242	c.618G>A	c.(616-618)GGG>GGA	p.G206G	SCNN1D_uc001adt.1_Silent_p.G370G|SCNN1D_uc001adw.2_Silent_p.G272G|SCNN1D_uc001adx.2_5'UTR|SCNN1D_uc001adv.2_Silent_p.G206G	NM_002978	NP_002969			sodium channel, nonvoltage-gated 1, delta												0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.01e-35)|OV - Ovarian serous cystadenocarcinoma(86;2.46e-21)|Colorectal(212;0.000157)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00251)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		TCAGAGTGGGGTTCAGACTGG	0.711													4	17					0	0	0.000602214	0	0
CDK11B	984	broad.mit.edu	37	1	1572086	1572086	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:1572086G>A	uc001agv.1	-	21	1986	c.1875C>T	c.(1873-1875)TTC>TTT	p.F625F	CDK11B_uc009vkj.2_Silent_p.F282F|CDK11B_uc001ags.1_Silent_p.F483F|CDK11B_uc001agt.1_Silent_p.F408F|CDK11B_uc001aha.1_Silent_p.F591F|CDK11B_uc001agw.1_Silent_p.F580F|CDK11B_uc001agy.1_Silent_p.F623F|CDK11B_uc001agx.1_Silent_p.F614F|CDK11B_uc001agz.1_Silent_p.F369F	NM_033486	NP_277021	P21127	CD11B_HUMAN	cell division cycle 2-like 1 (PITSLRE proteins)	638	Protein kinase.				apoptosis|cell proliferation|mitosis|regulation of cell growth|regulation of mRNA processing|regulation of transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity|protein binding			skin(1)	1						ACTTCCCGGGGAACAGAGGCT	0.572													11	40					0	0	0.00185496	0	0
KIAA1751	85452	broad.mit.edu	37	1	1897918	1897918	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:1897918G>A	uc001aim.1	-	12	1449	c.1293C>T	c.(1291-1293)GTC>GTT	p.V431V	KIAA1751_uc009vkz.1_Silent_p.V431V	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	431										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		CACTGGAAACGACTTCCAGCA	0.597													5	34					0	0	0.00116845	0	0
PANK4	55229	broad.mit.edu	37	1	2452230	2452230	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:2452230G>A	uc001ajm.1	-	4	547	c.538C>T	c.(538-540)CAG>TAG	p.Q180*	PANK4_uc010nza.1_Nonsense_Mutation_p.Q141*	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	180					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		TGGTTGGTCTGGAACCGGAAC	0.522													11	75					0	0	0.000673444	0	0
MMEL1	79258	broad.mit.edu	37	1	2537693	2537693	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:2537693G>A	uc001ajy.2	-	8	958	c.744C>T	c.(742-744)ATC>ATT	p.I248I	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	248	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		GTACGTAGATGATGTGCCGGC	0.642													8	57					0	0	0.000274275	0	0
RNF207	388591	broad.mit.edu	37	1	6273140	6273140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:6273140C>T	uc001amg.2	+	16	1723	c.1549C>T	c.(1549-1551)CTT>TTT	p.L517F	RNF207_uc010nzp.1_RNA	NM_207396	NP_997279	Q6ZRF8	RN207_HUMAN	ring finger protein 207	517	Potential.					intracellular	zinc ion binding				0	Ovarian(185;0.0634)	all_cancers(23;1.22e-38)|all_epithelial(116;4.25e-22)|all_lung(118;7.95e-08)|Lung NSC(185;1.6e-06)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;4.84e-38)|GBM - Glioblastoma multiforme(13;5.77e-32)|OV - Ovarian serous cystadenocarcinoma(86;2.88e-19)|Colorectal(212;6.9e-08)|COAD - Colon adenocarcinoma(227;8.13e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.00311)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		GCTCCATGACCTTCTCCAGCT	0.562													14	72					0	0	0.000566183	0	0
TNFRSF9	3604	broad.mit.edu	37	1	7995160	7995160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:7995160C>T	uc001aot.2	-	6	585	c.457G>A	c.(457-459)GAG>AAG	p.E153K		NM_001561	NP_001552	Q07011	TNR9_HUMAN	tumor necrosis factor receptor superfamily,	153	Extracellular (Potential).|TNFR-Cys 4.				induction of apoptosis|negative regulation of cell proliferation	integral to plasma membrane	binding|receptor activity			large_intestine(1)|lung(1)|ovary(1)|skin(1)	4	Ovarian(185;0.0634)|all_lung(157;0.151)	all_epithelial(116;9.63e-21)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.000625)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.93e-71)|GBM - Glioblastoma multiforme(8;3.72e-37)|Colorectal(212;7e-08)|COAD - Colon adenocarcinoma(227;7.71e-06)|Kidney(185;5.33e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000419)|KIRC - Kidney renal clear cell carcinoma(229;0.000979)|STAD - Stomach adenocarcinoma(132;0.00103)|READ - Rectum adenocarcinoma(331;0.0649)		ACGTCCCTCTCCTTCGTCCCA	0.502													17	40					0	0	0.000958276	0	0
SLC2A7	155184	broad.mit.edu	37	1	9078381	9078381	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:9078381G>A	uc009vmo.1	-	5	490	c.490C>T	c.(490-492)CTG>TTG	p.L164L		NM_207420	NP_997303	Q6PXP3	GTR7_HUMAN	intestinal facilitative glucose transporter 7	164	Cytoplasmic (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity				0	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.04e-07)|COAD - Colon adenocarcinoma(227;7.66e-05)|Kidney(185;0.000249)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.00177)|BRCA - Breast invasive adenocarcinoma(304;0.00185)|READ - Rectum adenocarcinoma(331;0.0642)		ATGCCTCTCAGGTTCTTGGGG	0.577													7	43					0	0	0.00198382	0	0
CASZ1	54897	broad.mit.edu	37	1	10720040	10720040	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:10720040C>T	uc001aro.2	-	6	1379	c.1059G>A	c.(1057-1059)GGG>GGA	p.G353G	CASZ1_uc001arp.1_Silent_p.G353G|CASZ1_uc009vmx.2_Silent_p.G377G|CASZ1_uc001arq.1_Silent_p.G212G	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	353					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		GGCTGCCCTCCCCGGGTTTGA	0.637													7	87					0	0	0.000157383	0	0
PTCHD2	57540	broad.mit.edu	37	1	11574471	11574471	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:11574471G>A	uc001ash.3	+	4	1479	c.1341G>A	c.(1339-1341)GGG>GGA	p.G447G	PTCHD2_uc001asi.1_Silent_p.G447G	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	447	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TCTATGGGGGGACAGACCTGT	0.512													21	58					0	0	0.00188189	0	0
PTCHD2	57540	broad.mit.edu	37	1	11596417	11596417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:11596417G>A	uc001ash.3	+	21	3991	c.3853G>A	c.(3853-3855)GCC>ACC	p.A1285T		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1285	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TACGCTGGAGGCCGTGCGGCA	0.682													8	21					0	0	0.000157383	0	0
PLOD1	5351	broad.mit.edu	37	1	12030738	12030738	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12030738C>T	uc001atm.2	+	17	1858	c.1767C>T	c.(1765-1767)ATC>ATT	p.I589I	PLOD1_uc010obb.1_Silent_p.I636I	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	589					epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	ACAACCGCATCCAGGGTGGCT	0.373													5	37					0	0	0.00116845	0	0
AADACL3	126767	broad.mit.edu	37	1	12785399	12785399	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12785399G>A	uc009vnn.1	+	4	722	c.489G>A	c.(487-489)CTG>CTA	p.L163L	AADACL3_uc001aug.1_Silent_p.L93L	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	163							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CTCAGATCCTGATCTATGCCA	0.512													43	103					0	0	0.00285205	0	0
C1orf158	93190	broad.mit.edu	37	1	12819291	12819291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12819291C>T	uc001auh.2	+	3	490	c.274C>T	c.(274-276)CGC>TGC	p.R92C	C1orf158_uc010obe.1_Missense_Mutation_p.R92C	NM_152290	NP_689503	Q8N1D5	CA158_HUMAN	hypothetical protein LOC93190	92										ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00575)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCCCACATCGCTACCTGAT	0.567													30	127					0	0	0.00209593	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835989	12835989	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12835989G>A	uc001aui.2	+	2	618	c.591G>A	c.(589-591)CTG>CTA	p.L197L		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	197										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TAGAGGTCCTGAACACGGTGG	0.522													16	124					0	0	0.00074312	0	0
LOC649330	649330	broad.mit.edu	37	1	12907563	12907563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12907563C>T	uc009vno.2	-	1	675	c.580G>A	c.(580-582)GTG>ATG	p.V194M	HNRNPCL1_uc010obf.1_Missense_Mutation_p.V194M	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	194							nucleic acid binding|nucleotide binding				0						AGAGAATCCACTTTCTGTTTT	0.433													18	170					0	0	0.00188189	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919613	12919613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12919613G>A	uc001aum.1	+	3	440	c.353G>A	c.(352-354)GGA>GAA	p.G118E		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	118											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGATGGCCTGGAGCCTGGGCC	0.537													47	167					0	0	0.000781405	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919744	12919744	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12919744G>A	uc001aum.1	+	3	571	c.484G>A	c.(484-486)GAA>AAA	p.E162K		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	162											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		ACCCCAGGATGAATGCCTGAG	0.468													20	211					0	0	0.00047179	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921378	12921378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12921378C>T	uc001aum.1	+	4	1256	c.1169C>T	c.(1168-1170)TCT>TTT	p.S390F		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	390											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AATTGCATGTCTATTGACGCC	0.562													10	79					0	0	0.000978159	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943090	12943090	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:12943090G>A	uc001aun.2	-	2	197	c.126C>T	c.(124-126)TTC>TTT	p.F42F		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	42										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGGCCTCCATGAACAGTGGGG	0.612													16	84					0	0	0.000958276	0	0
PRAMEF6	440561	broad.mit.edu	37	1	13001209	13001209	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:13001209C>T	uc001auq.2	-	3	560	c.474G>A	c.(472-474)AGG>AGA	p.R158R	PRAMEF5_uc001aur.2_Intron	NM_001010889	NP_001010889	Q5VXH4	PRAM6_HUMAN	PRAME family member 6	158											0	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CATCCAGAGTCCTGTTCTTGA	0.478													14	185					0	0	0.000878237	0	0
LOC440563	440563	broad.mit.edu	37	1	13183322	13183322	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:13183322T>G	uc010obg.1	-	1	646	c.551A>C	c.(550-552)AAG>ACG	p.K184T		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	184						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						CAACTCCTGCTTAATGGCCTG	0.438													40	517					0	0	0.000781405	0	0
PRAMEF17	391004	broad.mit.edu	37	1	13716882	13716882	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:13716882C>T	uc009vnz.1	+	2	399	c.369C>T	c.(367-369)TCC>TCT	p.S123S		NM_001099851	NP_001093321	Q5VTA0	PRA17_HUMAN	PRAME family member 17	123											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;9.86e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|COAD - Colon adenocarcinoma(227;0.000502)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGGCCCTCTCCTGCTCCCCAG	0.537													17	120					0	0	0.00188189	0	0
DNAJC16	23341	broad.mit.edu	37	1	15892438	15892438	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:15892438C>T	uc001aws.2	+	12	1743	c.1623C>T	c.(1621-1623)TCC>TCT	p.S541S	DNAJC16_uc001awr.1_Silent_p.S541S|DNAJC16_uc001awt.2_Silent_p.S229S|DNAJC16_uc001awu.2_RNA	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	541	Helical; Anchor for type IV membrane protein; (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		CCCTGCTGTCCCTGATCTTCT	0.423													21	446					0	0	0.00278032	0	0
FBLIM1	54751	broad.mit.edu	37	1	16095092	16095092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:16095092C>T	uc001axd.1	+	6	951	c.508C>T	c.(508-510)CCG>TCG	p.P170S	FBLIM1_uc001axe.1_Missense_Mutation_p.P170S|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Missense_Mutation_p.P170S|FBLIM1_uc001axh.1_Intron|FBLIM1_uc001axi.1_Intron	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	170	Pro-rich.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		GCCACCTCCCCCGGCAGAACC	0.632													6	34					0	0	0.00198382	0	0
SPEN	23013	broad.mit.edu	37	1	16260429	16260429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:16260429C>T	uc001axk.1	+	11	7898	c.7694C>T	c.(7693-7695)GCC>GTC	p.A2565V	SPEN_uc010obp.1_Missense_Mutation_p.A2524V	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2565	RID.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GTCAGTGCTGCCCCTTGCCTA	0.522													38	123					0	0	0.000953801	0	0
CLCNKA	1187	broad.mit.edu	37	1	16352730	16352730	+	Silent	SNP	C	T	T	rs115351575	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:16352730C>T	uc001axu.2	+	5	566	c.486C>T	c.(484-486)TTC>TTT	p.F162F	CLCNKA_uc001axt.2_RNA|CLCNKA_uc001axv.2_Silent_p.F162F|CLCNKA_uc010obw.1_Silent_p.F119F|CLCNKB_uc001axw.3_Intron|CLCNKA_uc010obx.1_5'Flank|CLCNKA_uc010oby.1_5'Flank	NM_004070	NP_004061	P51800	CLCKA_HUMAN	chloride channel Ka isoform 1	162	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)	Niflumic Acid(DB04552)	GCACCCTGTTCCTGGGCAAAG	0.597													6	63					0	0	0.00198382	0	0
C1orf89	79363	broad.mit.edu	37	1	16559500	16559500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:16559500G>A	uc001ayd.2	-	3	700	c.278C>T	c.(277-279)ACC>ATC	p.T93I		NM_030907	NP_112169	Q9BU20	RSG1_HUMAN	hypothetical protein LOC79363	93	Small GTPase-like.				cellular protein localization|cilium assembly|exocytosis|protein transport|regulation of exocytosis|regulation of vesicle fusion|small GTPase mediated signal transduction	cilium|microtubule basal body	GTP binding				0		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.2e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;9.12e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		AAATACCACGGTGGTCTGGAT	0.547													14	91					0	0	0.000566183	0	0
NBPF1	55672	broad.mit.edu	37	1	16901664	16901664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:16901664G>A	uc009vos.1	-	20	3068	c.2180C>T	c.(2179-2181)TCG>TTG	p.S727L	NBPF1_uc009vot.1_Missense_Mutation_p.S185L|NBPF1_uc001ayz.1_Missense_Mutation_p.S185L|NBPF1_uc010oce.1_Missense_Mutation_p.S456L	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	727	NBPF 3.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GGGGGCAGACGATTTCTGCAC	0.428													31	449					0	0	0.00222228	0	0
ATP13A2	23400	broad.mit.edu	37	1	17316661	17316661	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:17316661G>A	uc001baa.2	-	21	2563	c.2373C>T	c.(2371-2373)TTC>TTT	p.F791F	ATP13A2_uc001azz.1_5'Flank|ATP13A2_uc001bab.2_Silent_p.F786F|ATP13A2_uc001bac.2_Silent_p.F786F	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	791	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		CCATCGGCAGGAACTCGAGAG	0.642													6	34					0	0	0.00198382	0	0
PADI1	29943	broad.mit.edu	37	1	17548875	17548875	+	Silent	SNP	G	A	A	rs141135882		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:17548875G>A	uc001bah.1	+	2	275	c.183G>A	c.(181-183)GAG>GAA	p.E61E		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	61					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	GTGTGAAAGAGCCCATAGGCA	0.557													7	110					0	0	0.000274275	0	0
PADI4	23569	broad.mit.edu	37	1	17668439	17668439	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:17668439G>A	uc001baj.2	+	7	682	c.654G>A	c.(652-654)CGG>CGA	p.R218R	PADI4_uc009vpc.2_Silent_p.R218R	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	218					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CTCTCCTAGGGGGCAAACTGT	0.577													3	9					0	0	6.4e-05	0	0
IGSF21	84966	broad.mit.edu	37	1	18691827	18691827	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:18691827C>T	uc001bau.1	+	6	1034	c.651C>T	c.(649-651)CAC>CAT	p.H217H	IGSF21_uc001bav.1_Silent_p.H38H	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	217						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		GCCTTCTGCACCGTGACCTGG	0.652													5	41					0	0	0.000602214	0	0
PQLC2	54896	broad.mit.edu	37	1	19652757	19652757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:19652757C>T	uc001bby.2	+	6	753	c.401C>T	c.(400-402)TCC>TTC	p.S134F	PQLC2_uc001bbz.2_Missense_Mutation_p.S69F|PQLC2_uc001bca.2_Missense_Mutation_p.S134F|PQLC2_uc001bcb.2_Missense_Mutation_p.S23F|PQLC2_uc001bcc.2_Missense_Mutation_p.S23F	NM_017765	NP_060235	Q6ZP29	PQLC2_HUMAN	PQ loop repeat containing 2 isoform 1	134	Cytoplasmic (Potential).					integral to membrane					0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;1.89e-05)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CCCATCAACTCCGTGCTGTTG	0.597													7	24					0	0	0.000673444	0	0
PLA2G2F	64600	broad.mit.edu	37	1	20469973	20469973	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:20469973G>A	uc009vpp.1	+	3	302	c.204G>A	c.(202-204)CTG>CTA	p.L68L		NM_022819	NP_073730	Q9BZM2	PA2GF_HUMAN	phospholipase A2, group IIF	25					lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.000812)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.000524)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		TGCTCAACCTGAAGGCCATGG	0.667													6	70					0	0	0.00198382	0	0
PLA2G2C	391013	broad.mit.edu	37	1	20499350	20499350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:20499350C>T	uc009vpq.1	-	2	223	c.223G>A	c.(223-225)GAG>AAG	p.E75K		NM_001105572	NP_001099042			phospholipase A2, group IIC precursor												0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.14e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.000171)|GBM - Glioblastoma multiforme(114;0.000528)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CAGCTGAACTCCTTCAGCTTC	0.527													6	56					0	0	0.00198382	0	0
EIF4G3	8672	broad.mit.edu	37	1	21167511	21167511	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:21167511T>A	uc001bec.2	-	25	3987	c.3731A>T	c.(3730-3732)CAG>CTG	p.Q1244L	EIF4G3_uc010odi.1_Missense_Mutation_p.Q848L|EIF4G3_uc010odj.1_Missense_Mutation_p.Q1243L|EIF4G3_uc009vpz.2_Missense_Mutation_p.Q964L|EIF4G3_uc001bed.2_Missense_Mutation_p.Q1244L|EIF4G3_uc001bef.2_Missense_Mutation_p.Q1280L|EIF4G3_uc001bee.2_Missense_Mutation_p.Q1250L	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	1244	MI.				interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		TTCCACACACTGCATGGCTTC	0.438													9	52					0	0	0.000442599	0	0
EIF4G3	8672	broad.mit.edu	37	1	21268607	21268607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:21268607G>A	uc001bec.2	-	9	1128	c.872C>T	c.(871-873)CCA>CTA	p.P291L	EIF4G3_uc010odi.1_5'UTR|EIF4G3_uc010odj.1_Missense_Mutation_p.P290L|EIF4G3_uc009vpz.2_Intron|EIF4G3_uc001bed.2_Missense_Mutation_p.P291L|EIF4G3_uc001bef.2_Missense_Mutation_p.P290L|EIF4G3_uc001bee.2_Missense_Mutation_p.P297L|EIF4G3_uc001beg.2_Missense_Mutation_p.P290L|EIF4G3_uc010odk.1_Missense_Mutation_p.P291L|EIF4G3_uc001beh.2_Missense_Mutation_p.P302L	NM_003760	NP_003751	O43432	IF4G3_HUMAN	eukaryotic translation initiation factor 4	291					interspecies interaction between organisms|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|RNA cap binding|translation initiation factor activity			skin(1)	1		all_lung(284;2.61e-06)|Lung NSC(340;2.81e-06)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00149)|Ovarian(437;0.00338)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.023)|COAD - Colon adenocarcinoma(152;5.42e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000327)|GBM - Glioblastoma multiforme(114;0.000696)|Kidney(64;0.0018)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(64;0.0185)|READ - Rectum adenocarcinoma(331;0.124)|Lung(427;0.191)		GGTGAATATTGGTTGGCTACT	0.473													8	91					0	0	0.000274275	0	0
ECE1	1889	broad.mit.edu	37	1	21563260	21563260	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:21563260G>A	uc001bek.2	-	12	1542	c.1467C>T	c.(1465-1467)ACC>ACT	p.T489T	ECE1_uc001bem.2_Silent_p.T473T|ECE1_uc001bej.2_Silent_p.T477T|ECE1_uc001bei.2_Silent_p.T486T|ECE1_uc010odl.1_Silent_p.T489T|ECE1_uc009vqa.1_Silent_p.T489T	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	489	Extracellular (Potential).				bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		CTGATTTTCGGGTTTCCTCAT	0.567													15	188					0	0	0.000566183	0	0
EPHB2	2048	broad.mit.edu	37	1	23111036	23111036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:23111036C>T	uc009vqj.1	+	3	423	c.278C>T	c.(277-279)TCG>TTG	p.S93L	EPHB2_uc001bge.2_Missense_Mutation_p.S93L|EPHB2_uc001bgf.2_Missense_Mutation_p.S93L|EPHB2_uc010odu.1_Missense_Mutation_p.S93L	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	93	Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		ATGAAGTTTTCGGTGCGTGAC	0.572									Hereditary_Prostate_Cancer				6	21					0	0	0.00198382	0	0
MYOM3	127294	broad.mit.edu	37	1	24413179	24413179	+	Missense_Mutation	SNP	C	T	T	rs140144262		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:24413179C>T	uc001bin.3	-	15	1916	c.1753G>A	c.(1753-1755)GAT>AAT	p.D585N	MYOM3_uc001bim.3_Missense_Mutation_p.D242N|MYOM3_uc001bio.2_Missense_Mutation_p.D585N|MYOM3_uc001bip.1_Missense_Mutation_p.D242N	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	585	Fibronectin type-III 2.							p.D585N(1)		skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TCCGAGGGATCGCTCAGGCCA	0.632													8	44					0	0	0.000442599	0	0
CNKSR1	10256	broad.mit.edu	37	1	26515987	26515987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:26515987C>T	uc001bln.3	+	21	2169	c.2111C>T	c.(2110-2112)TCC>TTC	p.S704F	CNKSR1_uc001blm.3_Missense_Mutation_p.S697F|CNKSR1_uc009vsd.2_Missense_Mutation_p.S439F|CNKSR1_uc009vse.2_Missense_Mutation_p.S439F|CNKSR1_uc001blo.2_Missense_Mutation_p.S439F|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	704					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GAAGAGCACTCCCATCTCTGC	0.632													10	88					0	0	0.00136819	0	0
ZDHHC18	84243	broad.mit.edu	37	1	27175149	27175149	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:27175149C>T	uc001bnb.2	+	3	642	c.547C>T	c.(547-549)CTG>TTG	p.L183L	ZDHHC18_uc010ofh.1_Silent_p.L48L	NM_032283	NP_115659	Q9NUE0	ZDH18_HUMAN	zinc finger, DHHC-type containing 18	183						integral to membrane	zinc ion binding				0		all_cancers(24;5.82e-22)|all_epithelial(13;9.91e-20)|Colorectal(325;0.000147)|Breast(348;0.000706)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;5.71e-53)|Epithelial(14;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(117;1.53e-29)|Colorectal(126;1.9e-09)|COAD - Colon adenocarcinoma(152;4.2e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000548)|STAD - Stomach adenocarcinoma(196;0.00065)|KIRC - Kidney renal clear cell carcinoma(1967;0.000779)|GBM - Glioblastoma multiforme(114;0.0265)|READ - Rectum adenocarcinoma(331;0.0455)|Lung(427;0.163)|LUSC - Lung squamous cell carcinoma(448;0.237)		CCGGGAGGTGCTGATCAACGG	0.597													6	54					0	0	0.000274275	0	0
HCRTR1	3061	broad.mit.edu	37	1	32084964	32084964	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:32084964C>T	uc009vtx.2	+	3	556	c.171C>T	c.(169-171)TTC>TTT	p.F57F	HCRTR1_uc001btb.2_Intron|HCRTR1_uc001btc.3_Missense_Mutation_p.S31L|HCRTR1_uc001btd.2_Silent_p.F57F|HCRTR1_uc010ogl.1_Silent_p.F57F	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	57	Helical; Name=1; (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		TGGCTGTGTTCGTCGTGGCCC	0.587													8	68					0	0	0.000157383	0	0
LCK	3932	broad.mit.edu	37	1	32742265	32742265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:32742265C>T	uc001bux.2	+	9	980	c.842C>T	c.(841-843)TCC>TTC	p.S281F	LCK_uc001buy.2_Missense_Mutation_p.S281F|LCK_uc001buz.2_Missense_Mutation_p.S281F|LCK_uc010ohc.1_Missense_Mutation_p.S325F|LCK_uc001bva.2_Missense_Mutation_p.S288F	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	281	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	GGCAGCATGTCCCCGGACGCC	0.632			T	TRB@	T-ALL								13	43					0	0	0.000566183	0	0
TMEM54	113452	broad.mit.edu	37	1	33363812	33363812	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:33363812A>C	uc001bwi.1	-	2	239	c.125T>G	c.(124-126)GTG>GGG	p.V42G	TMEM54_uc001bwj.1_Missense_Mutation_p.V42G|TMEM54_uc001bwk.1_Missense_Mutation_p.V42G	NM_033504	NP_277039	Q969K7	TMM54_HUMAN	transmembrane protein 54	42	Helical; (Potential).					integral to membrane					0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				GTAGCGCAGCACTGTGCCATG	0.607													4	48					0	0	0.00024832	0	0
RNF19B	127544	broad.mit.edu	37	1	33408031	33408031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:33408031G>A	uc010oho.1	-	7	1435	c.1435C>T	c.(1435-1437)CCC>TCC	p.P479S	RNF19B_uc001bwm.3_Missense_Mutation_p.P478S|RNF19B_uc010ohp.1_Missense_Mutation_p.P478S	NM_153341	NP_699172	Q6ZMZ0	RN19B_HUMAN	ring finger protein 19B isoform a	479						integral to membrane	ligase activity|protein binding|zinc ion binding				0		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				CCAATGCTGGGATTCTTGAGG	0.483													5	43					0	0	0.00116845	0	0
CSMD2	114784	broad.mit.edu	37	1	34035099	34035099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:34035099C>T	uc001bxn.1	-	53	8041	c.8012G>A	c.(8011-8013)GGA>GAA	p.G2671E	CSMD2_uc001bxm.1_Missense_Mutation_p.G2669E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2671	Sushi 17.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGACAGTGTTCCGATGCGGTG	0.572													5	25					0	0	0.000602214	0	0
CSMD2	114784	broad.mit.edu	37	1	34164413	34164413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:34164413C>T	uc001bxn.1	-	24	3774	c.3745G>A	c.(3745-3747)GAG>AAG	p.E1249K	CSMD2_uc001bxm.1_Missense_Mutation_p.E1289K|CSMD2_uc001bxo.1_Missense_Mutation_p.E162K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1249	Sushi 7.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CACAGCAGCTCCTCACTACCC	0.602													7	53					0	0	0.000157383	0	0
CSMD2	114784	broad.mit.edu	37	1	34180320	34180320	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:34180320C>T	uc001bxn.1	-	21	3182	c.3153G>A	c.(3151-3153)AAG>AAA	p.K1051K	CSMD2_uc001bxm.1_Silent_p.K1091K	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1051	Sushi 6.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACTGCAAGCCCTTCCGGATGC	0.652													4	34					0	0	0.00024832	0	0
GJA4	2701	broad.mit.edu	37	1	35260797	35260797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:35260797C>T	uc001bya.2	+	2	1071	c.983C>T	c.(982-984)TCT>TTT	p.S328F	GJA4_uc009vul.2_Missense_Mutation_p.S404F|GJA4_uc009vum.1_Missense_Mutation_p.S328F	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	328	Cytoplasmic (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				AGCTCTGCTTCTAAGAAGCAG	0.602													6	43					0	0	0.000274275	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370291	35370291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:35370291G>A	uc001byc.2	-	1	694	c.694C>T	c.(694-696)CAC>TAC	p.H232Y		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	232	Poly-His.				cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				tggtggtggtggtgatggtgg	0.542													5	36					0	0	0.000602214	0	0
FHL3	2275	broad.mit.edu	37	1	38463199	38463199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:38463199C>T	uc001ccj.2	-	6	808	c.721G>A	c.(721-723)GAC>AAC	p.D241N	FHL3_uc001cck.2_Missense_Mutation_p.D241N|FHL3_uc001ccl.2_Silent_p.K239K|FHL3_uc001ccm.2_Missense_Mutation_p.D133N	NM_004468	NP_004459	Q13643	FHL3_HUMAN	four and a half LIM domains 3	241	LIM zinc-binding 4.				muscle organ development		zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CAGTGTCGGTCTTCAAAGGAC	0.607													4	28					0	0	0.000602214	0	0
RRAGC	64121	broad.mit.edu	37	1	39322615	39322616	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:39322615_39322616GG>TT	uc001ccq.2	-	2	398_399	c.376_377CC>AA	c.(376-378)CCA>AAA	p.P126K	RRAGC_uc010oim.1_Missense_Mutation_p.P92K|RRAGC_uc001ccr.2_Missense_Mutation_p.P48K	NM_022157	NP_071440	Q9HB90	RRAGC_HUMAN	Ras-related GTP binding C	126					apoptosis|cell growth|cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade|RNA splicing|small GTPase mediated signal transduction|transcription, DNA-dependent	lysosome|nucleus	GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein heterodimerization activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)				GTCAAAGGTTGGGTCAAAAAAG	0.406													9	155					0	0	6.4e-05	0	0
ZNF642	339559	broad.mit.edu	37	1	40955281	40955281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:40955281G>A	uc001cfo.2	+	5	721	c.427G>A	c.(427-429)GGA>AGA	p.G143R	ZNF642_uc009vwb.2_Missense_Mutation_p.G143R|ZNF642_uc010ojk.1_Missense_Mutation_p.G144R	NM_198494	NP_940896	Q49AA0	ZN642_HUMAN	zinc finger protein 642	143	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;8.81e-19)			AGAAGGCCCAGGAGATCCCAG	0.279													4	48					0	0	0.00024832	0	0
WDR65	149465	broad.mit.edu	37	1	43663257	43663257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:43663257C>T	uc001cip.1	+	7	1277	c.1156C>T	c.(1156-1158)CCA>TCA	p.P386S	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.P375S|WDR65_uc001ciq.1_Missense_Mutation_p.P386S	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	386										skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTTGATGTATCCATTGCACTC	0.493													10	82					0	0	0.000673444	0	0
PTCH2	8643	broad.mit.edu	37	1	45292283	45292283	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:45292283G>A	uc010olf.1	-	18	2865	c.2853C>T	c.(2851-2853)TTC>TTT	p.F951F	PTCH2_uc010olg.1_Silent_p.F649F	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	951	Extracellular (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CCCAGAAGAGGAAGGGGGAGC	0.657									Basal_Cell_Nevus_syndrome				4	24					0	0	0.000602214	0	0
DMBX1	127343	broad.mit.edu	37	1	46977718	46977718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:46977718C>T	uc001cpx.2	+	4	716	c.701C>T	c.(700-702)TCC>TTC	p.S234F	DMBX1_uc001cpw.2_Missense_Mutation_p.S229F	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	234					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CTTGCAGATTCCCCAGGCAGC	0.612													14	104					0	0	0.000958276	0	0
DMBX1	127343	broad.mit.edu	37	1	46978144	46978144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:46978144G>A	uc001cpx.2	+	4	1142	c.1127G>A	c.(1126-1128)GGA>GAA	p.G376E	DMBX1_uc001cpw.2_Missense_Mutation_p.G371E	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	376					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GCCTCCCTGGGACTCGATACG	0.627													6	47					0	0	0.00198382	0	0
SLC1A7	6512	broad.mit.edu	37	1	53558264	53558264	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:53558264G>A	uc001cuy.2	-	7	1161	c.993C>T	c.(991-993)ATC>ATT	p.I331I	SLC1A7_uc001cux.2_5'Flank	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	331	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	GAGCCTGCAGGATGCCACGGA	0.642													4	18					0	0	0.00024832	0	0
CDCP2	200008	broad.mit.edu	37	1	54605385	54605385	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:54605385C>T	uc001cwv.1	-	4	2006	c.1158G>A	c.(1156-1158)GGG>GGA	p.G386G		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	386						extracellular region				ovary(1)	1						GCAAAGCCTCCCCTTCGCCCT	0.612													5	27					0	0	0.00198382	0	0
PRKAA2	5563	broad.mit.edu	37	1	57158174	57158174	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:57158174C>T	uc001cyk.3	+	4	545	c.474C>T	c.(472-474)TTC>TTT	p.F158F		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	158	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						TAGCCGATTTCGGTATGTAAC	0.413													7	81					0	0	0.000274275	0	0
C8A	731	broad.mit.edu	37	1	57372418	57372418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:57372418G>A	uc001cyo.2	+	8	1307	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	392	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						AATGTTGGTGGAGGTTTATCA	0.413													18	68					0	0	0.000958276	0	0
C8B	732	broad.mit.edu	37	1	57425727	57425727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:57425727G>A	uc001cyp.2	-	2	282	c.215C>T	c.(214-216)TCT>TTT	p.S72F	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_Missense_Mutation_p.S20F	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	72	TSP type-1 1.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGTGGTCCAAGAGGACCAACT	0.522													6	31					0	0	0.00198382	0	0
DAB1	1600	broad.mit.edu	37	1	57476414	57476414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:57476414C>T	uc001cys.1	-	16	2296	c.1622G>A	c.(1621-1623)AGT>AAT	p.S541N	DAB1_uc001cyt.1_Missense_Mutation_p.S539N|DAB1_uc001cyq.1_Missense_Mutation_p.S539N|DAB1_uc001cyr.1_Missense_Mutation_p.S455N|DAB1_uc009vzw.1_Missense_Mutation_p.S523N|DAB1_uc009vzx.1_Missense_Mutation_p.S541N	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	574					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GGGCTCCCCACTGGGCTCACC	0.448													5	81					0	0	0.000157383	0	0
OMA1	115209	broad.mit.edu	37	1	59004759	59004759	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:59004759A>T	uc001cyy.2	-	2	296	c.208T>A	c.(208-210)TTT>ATT	p.F70I	DAB1_uc001cyt.1_Intron|OMA1_uc001cyx.1_Missense_Mutation_p.F70I|OMA1_uc009vzz.2_Missense_Mutation_p.F70I	NM_145243	NP_660286	Q96E52	OMA1_HUMAN	OMA1 homolog, zinc metallopeptidase precursor	70					proteolysis	integral to membrane|mitochondrial membrane	metal ion binding|metalloendopeptidase activity			large_intestine(1)	1	all_cancers(7;6.54e-05)					GTACTATAAAAATGAAAGTTT	0.383													25	91					0	0	0.000720815	0	0
FGGY	55277	broad.mit.edu	37	1	60104002	60104003	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:60104002_60104003CC>TT	uc001czi.3	+	11	1388_1389	c.1176_1177CC>TT	c.(1174-1179)TTCCAT>TTTTAT	p.H393Y	FGGY_uc001czh.2_RNA|FGGY_uc009wac.2_Missense_Mutation_p.H393Y|FGGY_uc001czj.3_Missense_Mutation_p.H392Y|FGGY_uc001czk.3_Missense_Mutation_p.H281Y|FGGY_uc001czl.3_Missense_Mutation_p.H305Y|FGGY_uc001czm.3_Missense_Mutation_p.H94Y	NM_018291	NP_060761	Q96C11	FGGY_HUMAN	FGGY carbohydrate kinase domain containing	393					carbohydrate metabolic process|cell death|neuron homeostasis		kinase activity|phosphotransferase activity, alcohol group as acceptor			ovary(1)	1	all_cancers(7;7.36e-05)					GGCCAGATTTCCATGGCAACCG	0.465													6	78					0	0	6.4e-05	0	0
INADL	10207	broad.mit.edu	37	1	62293127	62293127	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:62293127C>T	uc001dab.2	+	16	1966	c.1852C>T	c.(1852-1854)CGA>TGA	p.R618*	INADL_uc009waf.1_Nonsense_Mutation_p.R618*|INADL_uc001daa.2_Nonsense_Mutation_p.R618*|INADL_uc001dad.3_Nonsense_Mutation_p.R315*|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	618	PDZ 4.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						AAAATCTCGCCGAGAAGCAGT	0.438													14	143					0	0	0.00185496	0	0
INADL	10207	broad.mit.edu	37	1	62293185	62293185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:62293185G>A	uc001dab.2	+	16	2024	c.1910G>A	c.(1909-1911)CGG>CAG	p.R637Q	INADL_uc009waf.1_Missense_Mutation_p.R637Q|INADL_uc001daa.2_Missense_Mutation_p.R637Q|INADL_uc001dad.3_Missense_Mutation_p.R334Q|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	637	PDZ 4.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GTTTGCTGTCGGAGGTTGTTT	0.443													10	147					0	0	0.000673444	0	0
INADL	10207	broad.mit.edu	37	1	62393401	62393401	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:62393401G>A	uc001dab.2	+	27	3685	c.3571_splice	c.e27-1	p.R1191_splice	INADL_uc009waf.1_Splice_Site_p.R1191_splice|INADL_uc001daa.2_Splice_Site_p.R1191_splice|INADL_uc001dad.3_Splice_Site_p.R888_splice|INADL_uc001dac.2_Splice_Site	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like						intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TGCATCTTCAGAGGCAAGGAA	0.393													9	50					0	0	0.000274275	0	0
INADL	10207	broad.mit.edu	37	1	62393404	62393404	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:62393404G>C	uc001dab.2	+	27	3687	c.3573G>C	c.(3571-3573)AGG>AGC	p.R1191S	INADL_uc009waf.1_Missense_Mutation_p.R1191S|INADL_uc001daa.2_Missense_Mutation_p.R1191S|INADL_uc001dad.3_Missense_Mutation_p.R888S|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1191					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						ATCTTCAGAGGCAAGGAACTG	0.393													9	54					0	0	0.000274275	0	0
INADL	10207	broad.mit.edu	37	1	62582814	62582814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:62582814G>A	uc001dab.2	+	37	4928	c.4814G>A	c.(4813-4815)GGA>GAA	p.G1605E	INADL_uc001dac.2_RNA|INADL_uc010oot.1_Missense_Mutation_p.G419E|INADL_uc009wag.2_Missense_Mutation_p.G389E	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1605	PDZ 9.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						TGTGCACAGGGACTTGTGCAG	0.463													10	45					0	0	0.000978159	0	0
ITGB3BP	23421	broad.mit.edu	37	1	63955869	63955869	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:63955869G>A	uc001dba.1	-	3	100	c.69C>T	c.(67-69)ATC>ATT	p.I23I	ITGB3BP_uc001dbb.1_Silent_p.I62I|ITGB3BP_uc001dbc.1_RNA|ITGB3BP_uc001dbd.1_Intron|ITGB3BP_uc009wak.1_Silent_p.I45I	NM_014288	NP_055103	Q13352	CENPR_HUMAN	integrin beta 3 binding protein	23	DD1.				apoptosis|cell adhesion|CenH3-containing nucleosome assembly at centromere|induction of apoptosis by extracellular signals|mitotic prometaphase|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome, centromeric region|cytosol|membrane fraction|nucleoplasm	protein C-terminus binding|signal transducer activity				0						TCTTCCTTGTGATTTTTGAAG	0.299													7	61					0	0	0.000442599	0	0
ROR1	4919	broad.mit.edu	37	1	64644176	64644176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:64644176C>T	uc001dbj.2	+	9	2851	c.2452C>T	c.(2452-2454)CCC>TCC	p.P818S	uc001dbm.2_5'Flank	NM_005012	NP_005003	Q01973	ROR1_HUMAN	receptor tyrosine kinase-like orphan receptor 1	818	Cytoplasmic (Potential).|Pro-rich.				transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			ovary(6)|large_intestine(3)|breast(3)|stomach(2)|lung(2)|central_nervous_system(1)|skin(1)|kidney(1)	19						GCGATTCATTCCCATCAATGG	0.527													12	31					0	0	0.000978159	0	0
WDR78	79819	broad.mit.edu	37	1	67356859	67356859	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:67356859C>T	uc001dcx.2	-	4	677	c.621G>A	c.(619-621)CGG>CGA	p.R207R	WDR78_uc001dcy.2_Silent_p.R207R|WDR78_uc001dcz.2_Silent_p.R207R|WDR78_uc009wax.2_5'Flank	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	207										ovary(2)	2						TCAATCTTTCCCGTTTATAGG	0.338													11	140					0	0	0.00185496	0	0
C1orf141	400757	broad.mit.edu	37	1	67592915	67592915	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:67592915T>A	uc001ddl.1	-	2	120	c.9A>T	c.(7-9)GAA>GAT	p.E3D	C1orf141_uc001ddm.1_Missense_Mutation_p.E3D|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	3										ovary(1)	1						CTAGGATTTTTTCTGCCATTG	0.318													9	143					0	0	0.000274275	0	0
IL23R	149233	broad.mit.edu	37	1	67648522	67648522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:67648522C>T	uc001ddo.2	+	4	456	c.371C>T	c.(370-372)CCG>CTG	p.P124L	IL23R_uc009waz.2_5'UTR|IL23R_uc001ddp.2_RNA|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_5'UTR|IL23R_uc010opk.1_Missense_Mutation_p.P81L|IL23R_uc010opl.1_5'UTR|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_5'UTR|IL23R_uc010opn.1_Intron|IL23R_uc001ddr.2_RNA|IL23R_uc010opo.1_5'UTR|IL23R_uc010opp.1_RNA|IL23R_uc010opq.1_5'UTR|IL23R_uc010opr.1_RNA|IL23R_uc010ops.1_5'UTR|IL23R_uc010opt.1_5'UTR|IL23R_uc010opu.1_5'UTR|IL23R_uc010opv.1_5'UTR|IL23R_uc010opw.1_5'UTR|IL23R_uc010opx.1_5'UTR|IL23R_uc010opy.1_5'UTR|IL23R_uc010opz.1_5'UTR|IL23R_uc010oqa.1_5'UTR|IL23R_uc010oqb.1_5'UTR|IL23R_uc010oqc.1_5'UTR|IL23R_uc010oqd.1_5'UTR|IL23R_uc010oqe.1_5'UTR|IL23R_uc010oqf.1_5'UTR|IL23R_uc010oqg.1_5'UTR|IL23R_uc010oqh.1_5'UTR	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	124	Extracellular (Potential).|Fibronectin type-III 1.				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						GTTGCAGATCCGCCAGATATT	0.343													9	147					0	0	0.000673444	0	0
LRRC7	57554	broad.mit.edu	37	1	70509680	70509680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:70509680C>T	uc001dep.2	+	20	3929	c.3899C>T	c.(3898-3900)CCC>CTC	p.P1300L	LRRC7_uc009wbg.2_Missense_Mutation_p.P584L|LRRC7_uc001deq.2_Intron	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1300						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GGCATGCTGCCCTATGGAGGT	0.398													6	36					0	0	0.00116845	0	0
TNNI3K	51086	broad.mit.edu	37	1	74929184	74929184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:74929184C>T	uc001dgf.1	+	21	2122	c.2071C>T	c.(2071-2073)CCC>TCC	p.P691S	TNNI3K_uc001dgd.2_Missense_Mutation_p.P792S|TNNI3K_uc001dge.1_Missense_Mutation_p.P792S	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	691	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						CTATTCCATTCCCAAGCCCAT	0.443													17	134					0	0	0.000958276	0	0
LHX8	431707	broad.mit.edu	37	1	75622644	75622644	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:75622644C>G	uc001dgo.2	+	9	1541	c.877C>G	c.(877-879)CCA>GCA	p.P293A	LHX8_uc001dgq.2_Missense_Mutation_p.P232A	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	293						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						ATCCTCCACCCCAGTCACAGC	0.512													4	129					0	0	0.00024832	0	0
ACADM	34	broad.mit.edu	37	1	76198367	76198367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:76198367C>T	uc001dgw.3	+	3	587	c.157C>T	c.(157-159)CGT>TGT	p.R53C	ACADM_uc010orc.1_Missense_Mutation_p.R53C|ACADM_uc010ord.1_5'UTR|ACADM_uc009wbp.2_Missense_Mutation_p.R57C|ACADM_uc009wbr.2_Missense_Mutation_p.R53C|ACADM_uc010ore.1_Missense_Mutation_p.R17C|ACADM_uc010orf.1_5'UTR|ACADM_uc001dgx.3_5'UTR|ACADM_uc010org.1_5'UTR	NM_000016	NP_000007	P11310	ACADM_HUMAN	medium-chain acyl-CoA dehydrogenase isoform a	53			R -> C (in ACADMD).		carnitine biosynthetic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|medium-chain fatty acid catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|identical protein binding|medium-chain-acyl-CoA dehydrogenase activity			breast(2)|ovary(1)|skin(1)	4						AGCTACTGCTCGTAAATTTGC	0.343													11	173					0	0	0.00136819	0	0
MSH4	4438	broad.mit.edu	37	1	76344743	76344743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:76344743G>A	uc001dhd.1	+	12	1648	c.1607G>A	c.(1606-1608)GGA>GAA	p.G536E		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	536					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						TCTGCTCGAGGATTTTTCATC	0.348								MMR					8	58					0	0	0.000157383	0	0
NEXN	91624	broad.mit.edu	37	1	78401623	78401623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:78401623G>A	uc001dic.3	+	11	1664	c.1367G>A	c.(1366-1368)GGA>GAA	p.G456E	NEXN_uc001dia.3_Missense_Mutation_p.G442E|NEXN_uc009wcb.1_Missense_Mutation_p.G378E|NEXN_uc001dib.3_Missense_Mutation_p.G392E|NEXN_uc001did.1_Missense_Mutation_p.G366E|NEXN_uc001dif.1_Missense_Mutation_p.G348E|NEXN_uc001dig.3_Missense_Mutation_p.G97E	NM_144573	NP_653174	Q0ZGT2	NEXN_HUMAN	nexilin (F actin binding protein)	456	Glu-rich.				regulation of cell migration|regulation of cytoskeleton organization	cytoskeleton|Z disc	actin filament binding|structural constituent of muscle			ovary(2)	2				Colorectal(170;0.114)		GAAAAAATTGGACAGTTGTCT	0.333													9	106					0	0	0.000274275	0	0
PTGFR	5737	broad.mit.edu	37	1	78958511	78958511	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:78958511T>C	uc001din.2	+	2	349	c.83T>C	c.(82-84)CTT>CCT	p.L28P	PTGFR_uc001dim.2_Missense_Mutation_p.L28P	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	28	Extracellular (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	GAAAACCGGCTTTCCGTATTT	0.438													7	88					0	0	0.00198382	0	0
LPHN2	23266	broad.mit.edu	37	1	82434986	82434986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:82434986G>A	uc001dit.3	+	14	2778	c.2597G>A	c.(2596-2598)CGA>CAA	p.R866Q	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.R866Q|LPHN2_uc001div.2_Missense_Mutation_p.R866Q|LPHN2_uc009wcd.2_Missense_Mutation_p.R866Q|LPHN2_uc001diw.2_Missense_Mutation_p.R450Q|LPHN2_uc009wce.1_5'Flank	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	879	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		CAGAGTGACCGAAATACTATT	0.408													6	86					0	0	0.000157383	0	0
MCOLN2	255231	broad.mit.edu	37	1	85406603	85406603	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:85406603G>A	uc001dkm.2	-	8	1160	c.919C>T	c.(919-921)CTG>TTG	p.L307L	MCOLN2_uc001dkn.2_Intron	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	307	Helical; (Potential).					integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		CTTGTACACAGAATAAGAGAT	0.428													8	24					0	0	0.000274275	0	0
MCOLN3	55283	broad.mit.edu	37	1	85499870	85499870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:85499870G>A	uc001dkp.2	-	4	554	c.461C>T	c.(460-462)TCT>TTT	p.S154F	MCOLN3_uc001dkq.2_Missense_Mutation_p.S98F|MCOLN3_uc001dkr.2_Missense_Mutation_p.S154F|MCOLN3_uc001dks.3_5'UTR	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	154						integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		TGCCATAGCAGATTGCTTGGT	0.413													9	71					0	0	0.000274275	0	0
COL24A1	255631	broad.mit.edu	37	1	86375671	86375671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:86375671G>A	uc001dlj.2	-	26	2674	c.2632C>T	c.(2632-2634)CCA>TCA	p.P878S	COL24A1_uc001dli.2_Missense_Mutation_p.P14S|COL24A1_uc010osd.1_Missense_Mutation_p.P178S|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	878	Collagen-like 6.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		AGTGGGCCTGGACTTCCACGT	0.388													15	91					0	0	0.00121646	0	0
CLCA4	22802	broad.mit.edu	37	1	87031544	87031544	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:87031544A>G	uc009wcs.2	+	6	839	c.795A>G	c.(793-795)ATA>ATG	p.I265M	CLCA4_uc009wct.2_Missense_Mutation_p.I28M|CLCA4_uc009wcu.2_Missense_Mutation_p.I85M	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	265						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TACAAAACATAAAGTGCAATT	0.333													6	47					0	0	0.00116845	0	0
CLCA4	22802	broad.mit.edu	37	1	87040384	87040384	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:87040384C>T	uc009wcs.2	+	10	1673	c.1629C>T	c.(1627-1629)TTC>TTT	p.F543F	CLCA4_uc009wct.2_Silent_p.F306F|CLCA4_uc009wcu.2_Silent_p.F363F	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	543						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		TGGAAAATTTCACAGTGGATG	0.408													6	31					0	0	0.00198382	0	0
BCAR3	8412	broad.mit.edu	37	1	94033370	94033370	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:94033370G>A	uc001dpz.2	-	10	2288	c.2013C>T	c.(2011-2013)CAC>CAT	p.H671H	BCAR3_uc001dqa.2_Silent_p.H671H|BCAR3_uc001dqb.2_Silent_p.H671H|BCAR3_uc001dpx.3_Silent_p.H347H|BCAR3_uc001dpy.2_Silent_p.H580H	NM_003567	NP_003558	O75815	BCAR3_HUMAN	breast cancer antiestrogen resistance 3	671	Ras-GEF.				response to drug|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3		all_lung(203;0.00145)|Lung NSC(277;0.00662)		all cancers(265;0.0126)|GBM - Glioblastoma multiforme(16;0.0467)|Epithelial(280;0.166)		GGGTGTACTGGTGCCGCAGAG	0.448													19	75					0	0	0.000586117	0	0
ABCA4	24	broad.mit.edu	37	1	94473280	94473280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:94473280C>T	uc001dqh.2	-	43	6019	c.5915G>A	c.(5914-5916)GGA>GAA	p.G1972E	ABCA4_uc001dqi.1_Missense_Mutation_p.G91E	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1972	ABC transporter 2.|Cytoplasmic.|ATP 2 (Potential).				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		ACCATTCACTCCCAGGAGGCC	0.542													9	58					0	0	0.000274275	0	0
ABCA4	24	broad.mit.edu	37	1	94473802	94473802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:94473802G>A	uc001dqh.2	-	42	5991	c.5887C>T	c.(5887-5889)CGC>TGC	p.R1963C	ABCA4_uc001dqi.1_Missense_Mutation_p.R82C	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1963	ABC transporter 2.|Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TCTCCAGGGCGAACTCCGACA	0.522													13	53					0	0	0.00244969	0	0
PTBP2	58155	broad.mit.edu	37	1	97235385	97235385	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:97235385C>A	uc001drq.2	+	4	488	c.242C>A	c.(241-243)CCT>CAT	p.P81H	PTBP2_uc001drn.2_Missense_Mutation_p.P81H|PTBP2_uc001dro.2_Missense_Mutation_p.P81H|PTBP2_uc010otz.1_Missense_Mutation_p.P92H|PTBP2_uc001drp.2_RNA|PTBP2_uc009wdw.2_Missense_Mutation_p.P29H|PTBP2_uc001drr.2_Missense_Mutation_p.P81H|PTBP2_uc010oua.1_Missense_Mutation_p.P89H|PTBP2_uc001dru.2_RNA|PTBP2_uc001drm.2_Missense_Mutation_p.P81H	NM_021190	NP_067013	Q9UKA9	PTBP2_HUMAN	polypyrimidine tract binding protein 2	81	RRM 1.						nucleotide binding				0		all_epithelial(167;2.95e-05)|all_lung(203;0.000396)|Lung NSC(277;0.00171)		all cancers(265;0.0582)|Epithelial(280;0.0716)|Colorectal(170;0.0879)|KIRC - Kidney renal clear cell carcinoma(1967;0.202)		TTAGGCTTACCTTTTGGTAAG	0.388													7	96					0.00198382	0.00786986	0.00198382	1	0
DPYD	1806	broad.mit.edu	37	1	97771799	97771799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:97771799G>A	uc001drv.2	-	17	2250	c.2113C>T	c.(2113-2115)CCT>TCT	p.P705S		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	705					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GCAAAAAAAGGAATCTGAACA	0.433													10	41					0	0	0.000673444	0	0
FRRS1	391059	broad.mit.edu	37	1	100203756	100203756	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:100203756C>A	uc001dsh.1	-	7	1247	c.645G>T	c.(643-645)AAG>AAT	p.K215N		NM_001013660	NP_001013682	Q6ZNA5	FRRS1_HUMAN	stromal cell derived factor receptor 2 homolog	215					electron transport chain|transport	integral to membrane	ferric-chelate reductase activity|metal ion binding			skin(1)	1		all_epithelial(167;2.09e-06)|all_lung(203;0.000435)|Lung NSC(277;0.00201)		Epithelial(280;0.0718)|all cancers(265;0.126)|COAD - Colon adenocarcinoma(174;0.148)|Lung(183;0.206)		AGGAAGCCTCCTTCTCTGGGT	0.428													11	69					7.03913e-09	2.82665e-08	0.00136819	1	0
AGL	178	broad.mit.edu	37	1	100340293	100340293	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:100340293C>T	uc001dsi.1	+	8	1409	c.1009C>T	c.(1009-1011)CAA>TAA	p.Q337*	AGL_uc001dsj.1_Nonsense_Mutation_p.Q337*|AGL_uc001dsk.1_Nonsense_Mutation_p.Q337*|AGL_uc001dsl.1_Nonsense_Mutation_p.Q337*|AGL_uc001dsm.1_Nonsense_Mutation_p.Q321*|AGL_uc001dsn.1_Nonsense_Mutation_p.Q320*	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	337	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TACGATTATTCAAGATCCTGA	0.348													7	63					0	0	0.00198382	0	0
RTCD1	8634	broad.mit.edu	37	1	100757014	100757014	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:100757014A>T	uc001dtc.2	+	11	1273	c.1055A>T	c.(1054-1056)TAT>TTT	p.Y352F	RTCD1_uc001dtd.2_Missense_Mutation_p.Y365F	NM_003729	NP_003720	O00442	RTC1_HUMAN	RNA terminal phosphate cyclase domain 1 isoform	352					RNA processing	mitochondrion|nucleoplasm	ATP binding|protein binding|RNA binding|RNA-3'-phosphate cyclase activity				0		all_epithelial(167;0.000686)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0513)|all cancers(265;0.0902)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)		AAAGATACTTATATTATTGAA	0.318													50	251					0	0	0.000781405	0	0
OLFM3	118427	broad.mit.edu	37	1	102302440	102302440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:102302440C>T	uc001duf.2	-	2	342	c.271G>A	c.(271-273)GAA>AAA	p.E91K	OLFM3_uc001dug.2_Missense_Mutation_p.E71K|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_5'UTR|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	91	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		CCTACCTTTTCCAGTAGTTGG	0.448													12	101					0	0	0.00244969	0	0
COL11A1	1301	broad.mit.edu	37	1	103483439	103483439	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:103483439C>T	uc001dul.2	-	11	1669	c.1351_splice	c.e11-1	p.G451_splice	COL11A1_uc001duk.2_Splice_Site|COL11A1_uc001dum.2_Splice_Site_p.G463_splice|COL11A1_uc001dun.2_Splice_Site_p.G412_splice|COL11A1_uc009weh.2_Splice_Site_p.G335_splice	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A						collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CCATAATACCCTATAGAGAAA	0.393													4	56					0	0	0.000602214	0	0
CSF1	1435	broad.mit.edu	37	1	110464543	110464543	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:110464543G>A	uc001dyu.2	+	5	884	c.471G>A	c.(469-471)AAG>AAA	p.K157K	CSF1_uc001dyt.2_Silent_p.K157K|CSF1_uc001dyv.3_Silent_p.K157K|CSF1_uc001dyw.3_Silent_p.K157K	NM_172212	NP_757351	P09603	CSF1_HUMAN	colony stimulating factor 1 isoform a precursor	157	Lumenal (Potential).				cell proliferation|developmental process involved in reproduction|macrophage differentiation|monocyte activation|osteoclast differentiation|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of cellular protein metabolic process|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of monocyte differentiation|positive regulation of mononuclear cell proliferation|positive regulation of protein kinase activity	extracellular space|integral to membrane|perinuclear region of cytoplasm|plasma membrane|receptor complex	cytokine activity|growth factor activity|macrophage colony-stimulating factor receptor binding|protein homodimerization activity			ovary(1)	1		all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)|Acute lymphoblastic leukemia(138;0.204)		Lung(183;0.0238)|Colorectal(144;0.112)|all cancers(265;0.117)|Epithelial(280;0.127)|LUSC - Lung squamous cell carcinoma(189;0.135)		ATGAAACAAAGAATCTCCTTG	0.483													12	67					0	0	0.000978159	0	0
KCND3	3752	broad.mit.edu	37	1	112319760	112319760	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:112319760T>C	uc001ebu.1	-	7	2134	c.1654A>G	c.(1654-1656)AAG>GAG	p.K552E	KCND3_uc001ebv.1_Missense_Mutation_p.K533E	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	552	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		GTGGTCTTCTTACTACGACGG	0.572													7	47					0	0	0.000274275	0	0
PTPN22	26191	broad.mit.edu	37	1	114394720	114394720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:114394720G>A	uc001eds.2	-	10	887	c.757C>T	c.(757-759)CCT>TCT	p.P253S	PTPN22_uc009wgq.2_Intron|PTPN22_uc010owo.1_Missense_Mutation_p.P9S|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.P253S|PTPN22_uc009wgs.2_Missense_Mutation_p.P126S|PTPN22_uc001edu.2_Missense_Mutation_p.P253S	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	253	Tyrosine-protein phosphatase.				negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGTTCTCAGGAATTATCTAT	0.353													7	45					0	0	0.00198382	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114449757	114449757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:114449757G>A	uc001eeg.2	+	2	500	c.329G>A	c.(328-330)GGA>GAA	p.G110E	AP4B1_uc001eeb.2_5'Flank|AP4B1_uc001eec.2_5'Flank|AP4B1_uc001eed.2_5'Flank|AP4B1_uc010owp.1_5'Flank|AP4B1_uc010owq.1_5'Flank|DCLRE1B_uc001eeh.2_Intron|DCLRE1B_uc001eei.2_Intron	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	110					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTCTTTGAAGGATATTTTGGA	0.398								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					6	62					0	0	0.00198382	0	0
HIPK1	204851	broad.mit.edu	37	1	114483056	114483056	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:114483056C>T	uc001eem.2	+	2	212	c.51C>T	c.(49-51)GCC>GCT	p.A17A	HIPK1_uc001eel.2_Silent_p.A17A|HIPK1_uc001een.2_Silent_p.A17A	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	17					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CGTCGAGTGCCTTCTGCAGTG	0.458													13	196					0	0	0.000308642	0	0
DENND2C	163259	broad.mit.edu	37	1	115142859	115142859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:115142859C>T	uc001efd.1	-	15	2773	c.2071G>A	c.(2071-2073)GAG>AAG	p.E691K	DENND2C_uc001eez.2_Intron|DENND2C_uc001efc.1_Missense_Mutation_p.E634K	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	691	DENN.									skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACCCTACGCTCCAAAAGGAGA	0.403													5	23					0	0	0.00116845	0	0
DENND2C	163259	broad.mit.edu	37	1	115168137	115168137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:115168137G>A	uc001efd.1	-	4	1171	c.469C>T	c.(469-471)CCC>TCC	p.P157S	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.P157S	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	157										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTATCTGGGGGAAGTGCTTCT	0.368													9	82					0	0	0.000274275	0	0
SYCP1	6847	broad.mit.edu	37	1	115453021	115453021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:115453021G>A	uc001efr.2	+	17	1533	c.1324G>A	c.(1324-1326)GAA>AAA	p.E442K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E442K|SYCP1_uc009wgw.2_Missense_Mutation_p.E442K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	442	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TAAATAGGGAGAAAAGGAAAC	0.338													9	52					0	0	0.000442599	0	0
PTGFRN	5738	broad.mit.edu	37	1	117491913	117491913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:117491913C>T	uc001egv.1	+	4	1069	c.932C>T	c.(931-933)CCC>CTC	p.P311L		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	311	Ig-like C2-type 3.|Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		GACGTCCGGCCCGAGGTGACG	0.607													6	38					0	0	0.00116845	0	0
CD101	9398	broad.mit.edu	37	1	117576597	117576597	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:117576597G>A	uc010oxb.1	+	9	2998	c.2940G>A	c.(2938-2940)AAG>AAA	p.K980K	CD101_uc009whd.2_Silent_p.K980K|CD101_uc010oxc.1_Silent_p.K980K|CD101_uc010oxd.1_Silent_p.K918K	NM_004258	NP_004249	Q93033	IGSF2_HUMAN	immunoglobulin superfamily, member 2 precursor	980	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4						TATACTGGAAGGCCAGGAAGT	0.522													15	77					0	0	0.000422831	0	0
TRIM45	80263	broad.mit.edu	37	1	117658248	117658248	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:117658248C>T	uc001egz.2	-	4	2004	c.1416G>A	c.(1414-1416)AAG>AAA	p.K472K	TRIM45_uc009whe.2_Silent_p.K454K|TRIM45_uc001eha.2_Silent_p.K368K	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	472	Filamin.					cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		CGCCAGGTTCCTTGGGGGTGT	0.493													6	86					0	0	0.00198382	0	0
TRIM45	80263	broad.mit.edu	37	1	117661046	117661046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:117661046G>A	uc001egz.2	-	2	1420	c.832C>T	c.(832-834)CGG>TGG	p.R278W	TRIM45_uc009whe.2_Missense_Mutation_p.R278W|TRIM45_uc001eha.2_Missense_Mutation_p.R174W	NM_025188	NP_079464	Q9H8W5	TRI45_HUMAN	tripartite motif-containing 45 isoform 1	278						cytoplasm|nucleus	zinc ion binding			central_nervous_system(1)	1	Lung SC(450;0.225)	all_cancers(81;0.000979)|all_lung(203;7.65e-05)|all_epithelial(167;0.000134)|Lung NSC(69;0.000389)		Lung(183;0.0537)|Colorectal(144;0.172)|LUSC - Lung squamous cell carcinoma(189;0.187)		GAGAATGTCCGGACATCAGCT	0.567													8	76					0	0	0.000442599	0	0
TBX15	6913	broad.mit.edu	37	1	119467332	119467332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:119467332C>T	uc001ehl.1	-	4	627	c.312G>A	c.(310-312)ATG>ATA	p.M104I		NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	210	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CCACCTGTCTCATCCAGGTGT	0.463													16	108					0	0	0.000566183	0	0
HAO2	51179	broad.mit.edu	37	1	119935285	119935285	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:119935285G>A	uc001ehq.1	+	8	1327	c.975G>A	c.(973-975)GAG>GAA	p.E325E	HAO2_uc001ehr.1_Silent_p.E325E	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	325	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TAACAAATGAGTTCCACACTT	0.438													12	43					0	0	0.00136819	0	0
ADAM30	11085	broad.mit.edu	37	1	120437782	120437783	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:120437782_120437783GG>TT	uc001eij.2	-	1	1331_1332	c.1177_1178CC>AA	c.(1177-1179)CCA>AAA	p.P393K		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	393	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		ACCTAGTCCTGGGATATTATTT	0.411													27	575					0	0	6.4e-05	0	0
ADAM30	11085	broad.mit.edu	37	1	120438653	120438653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:120438653G>A	uc001eij.2	-	1	461	c.307C>T	c.(307-309)CAT>TAT	p.H103Y		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	103					proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		ATGTAAGGATGATCCTCCAGC	0.517													64	314					0	0	0.000781405	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144867970	144867970	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:144867970C>T	uc001elw.3	-	33	5760	c.5469G>A	c.(5467-5469)GGG>GGA	p.G1823G	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.G1717G|PDE4DIP_uc001elv.3_Silent_p.G830G|PDE4DIP_uc001ema.2_Silent_p.G10G	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1823					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		AGGATAGGTCCCCAGATACAC	0.522			T	PDGFRB	MPD								31	204					0	0	0.00111076	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144879432	144879432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:144879432C>T	uc001elw.3	-	27	4309	c.4018G>A	c.(4018-4020)GAA>AAA	p.E1340K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E1296K|PDE4DIP_uc001elv.3_Missense_Mutation_p.E347K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1340					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CGGAACTCTTCCTGCTTCCCT	0.537			T	PDGFRB	MPD								30	271					0	0	0.00111076	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244													3	38					0	0	6.4e-05	0	0
GJA8	2703	broad.mit.edu	37	1	147380201	147380201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:147380201C>T	uc001epu.1	+	2	182	c.119C>T	c.(118-120)GCC>GTC	p.A40V		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	40	Helical; (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CTTGGCACGGCCGCAGAGTTC	0.592													8	35					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	1	148889643	148889643	+	RNA	SNP	T	C	C	rs4950649	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:148889643T>C	uc009wkv.1	+	7		c.730T>C								Homo sapiens cDNA, FLJ17483.																		GTAGCAGACATTGGTTTTGAT	0.358													5	68					0	0	0.00198382	0	0
Unknown	0	broad.mit.edu	37	1	148889678	148889678	+	RNA	SNP	C	T	T	rs4950650		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:148889678C>T	uc009wkv.1	+	7		c.765C>T								Homo sapiens cDNA, FLJ17483.																		ACCCTATATGCCTGCGTCTAA	0.398													5	69					0	0	0.000157383	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058833	152058833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152058833G>A	uc001ezo.1	-	3	1390	c.1325C>T	c.(1324-1326)TCT>TTT	p.S442F		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	442							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TTGTGTCTCAGAACCTTTTTC	0.453													8	116					0	0	0.000157383	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059062	152059062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152059062C>T	uc001ezo.1	-	3	1161	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	366							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			GTTTCACATTCTTTTTCTTGG	0.448													41	138					0	0	0.00285205	0	0
FLG	2312	broad.mit.edu	37	1	152281099	152281099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152281099C>T	uc001ezu.1	-	3	6299	c.6263G>A	c.(6262-6264)GGG>GAG	p.G2088E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2088	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGGAAAGACCCTGAACGTCC	0.562									Ichthyosis				16	156					0	0	0.000566183	0	0
FLG	2312	broad.mit.edu	37	1	152285743	152285743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152285743C>T	uc001ezu.1	-	3	1655	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	540	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACCTGAGTGTCCAGACCTATT	0.567									Ichthyosis				44	148					0	0	0.00285205	0	0
FLG	2312	broad.mit.edu	37	1	152286427	152286427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152286427C>T	uc001ezu.1	-	3	971	c.935G>A	c.(934-936)AGG>AAG	p.R312K	uc001ezv.2_RNA	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	312	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCAGAGTGCCTCTCAGAGTC	0.557									Ichthyosis				8	142					0	0	0.000157383	0	0
FLG	2312	broad.mit.edu	37	1	152287016	152287016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152287016C>T	uc001ezu.1	-	3	382	c.346G>A	c.(346-348)GAA>AAA	p.E116K	uc001ezv.2_Intron	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	116					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTGTTTTCTTCCTGTTTATTA	0.378									Ichthyosis				15	95					0	0	0.00244969	0	0
FLG2	388698	broad.mit.edu	37	1	152325478	152325478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152325478C>T	uc001ezw.3	-	3	4857	c.4784G>A	c.(4783-4785)CGA>CAA	p.R1595Q	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1595							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGTGTTCTCGTGAGTGTGG	0.512													16	129					0	0	0.000566183	0	0
LCE3B	353143	broad.mit.edu	37	1	152586504	152586504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152586504C>T	uc010pds.1	+	1	218	c.218C>T	c.(217-219)TCC>TTC	p.S73F		NM_178433	NP_848520	Q5TA77	LCE3B_HUMAN	late cornified envelope 3B	73	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0313)|Kidney(5;0.0367)		AGCTCCAACTCCTGTGACAGA	0.627													30	64					0	0	0.00058488	0	0
LCE2D	353141	broad.mit.edu	37	1	152636559	152636559	+	Splice_Site	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152636559A>C	uc001fag.2	+	2	35	c.-20_splice	c.e2-2			NM_178430	NP_848517	Q5TA82	LCE2D_HUMAN	late cornified envelope 2D						keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATTATCTTTTAGGTTGACTAA	0.408													12	26					0	0	0.000978159	0	0
LCE1E	353135	broad.mit.edu	37	1	152759921	152759921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:152759921G>A	uc001fan.2	+	2	199	c.146G>A	c.(145-147)GGA>GAA	p.G49E		NM_178353	NP_848130	Q5T753	LCE1E_HUMAN	late cornified envelope 1E	49	Cys-rich.				keratinization						0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCAGCTCCGGAGGCTGCTGT	0.577													16	44					0	0	0.00047179	0	0
LELP1	149018	broad.mit.edu	37	1	153177245	153177245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:153177245C>T	uc001fbl.2	+	2	172	c.62C>T	c.(61-63)CCC>CTC	p.P21L		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	21	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACTGCGATCCCAAGTGTGAA	0.443													8	99					0	0	0.000673444	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153276476	153276476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:153276476G>A	uc001fbn.1	-	4	439	c.386C>T	c.(385-387)CCC>CTC	p.P129L		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	129					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGCAGGGCTGGGACTGCTGCC	0.507													15	37					0	0	0.000566183	0	0
SHE	126669	broad.mit.edu	37	1	154461816	154461816	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:154461816A>G	uc001ffb.2	-	3	822	c.735T>C	c.(733-735)GGT>GGC	p.G245G	SHE_uc001ffc.2_RNA	NM_001010846	NP_001010846	Q5VZ18	SHE_HUMAN	Src homology 2 domain containing E	245										breast(3)|ovary(2)|central_nervous_system(1)	6	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			GATCTTTGGAACCCCGTCGTC	0.473													16	59					0	0	0.000958276	0	0
MTX1	4580	broad.mit.edu	37	1	155180189	155180189	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:155180189C>G	uc001fjb.2	+	2	687	c.581C>G	c.(580-582)CCC>CGC	p.P194R	RAG1AP1_uc010pey.1_Intron|THBS3_uc001fix.2_5'Flank|THBS3_uc009wqi.2_5'Flank|THBS3_uc001fiz.2_5'Flank|THBS3_uc001fiy.2_5'Flank|THBS3_uc010pfu.1_5'Flank|THBS3_uc010pfv.1_5'Flank|THBS3_uc001fja.2_5'Flank|THBS3_uc009wqj.1_5'Flank|MTX1_uc001fjc.2_Missense_Mutation_p.P194R	NM_002455	NP_002446	Q13505	MTX1_HUMAN	metaxin 1 isoform 1	194					protein targeting to mitochondrion	integral to membrane|mitochondrial outer membrane	protein binding			skin(1)	1	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			ATCAGCAACCCCTGGCAGAGC	0.527													3	55					0	0	0.00024832	0	0
YY1AP1	55249	broad.mit.edu	37	1	155640148	155640148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:155640148G>A	uc001fln.2	-	8	913	c.889C>T	c.(889-891)CCC>TCC	p.P297S	YY1AP1_uc001flg.2_Missense_Mutation_p.P16S|YY1AP1_uc010pgg.1_Missense_Mutation_p.P136S|YY1AP1_uc010pgh.1_Missense_Mutation_p.P220S|YY1AP1_uc010pgi.1_Missense_Mutation_p.P369S|YY1AP1_uc001flh.2_Missense_Mutation_p.P369S|YY1AP1_uc009wqt.2_Missense_Mutation_p.P220S|YY1AP1_uc001flk.2_Missense_Mutation_p.P220S|YY1AP1_uc001fll.2_Missense_Mutation_p.P231S|YY1AP1_uc009wqv.2_Intron|YY1AP1_uc001flm.2_Missense_Mutation_p.P220S|YY1AP1_uc001fli.2_Missense_Mutation_p.P231S|YY1AP1_uc009wqu.2_Missense_Mutation_p.P64S|YY1AP1_uc001flj.2_Missense_Mutation_p.P231S|YY1AP1_uc009wqw.2_Missense_Mutation_p.P220S|YY1AP1_uc001flo.2_Missense_Mutation_p.P165S|YY1AP1_uc001flp.2_Missense_Mutation_p.P231S|YY1AP1_uc010pgj.1_Missense_Mutation_p.P297S|YY1AP1_uc009wqx.2_Missense_Mutation_p.P369S|YY1AP1_uc010pgk.1_Intron	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	297					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					TTATCCTGGGGATTCTTTGCC	0.458													27	68					0	0	0.00178596	0	0
DAP3	7818	broad.mit.edu	37	1	155695218	155695218	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:155695218C>T	uc001flq.2	+	5	485	c.316C>T	c.(316-318)CTA>TTA	p.L106L	DAP3_uc001flr.2_Silent_p.L106L|DAP3_uc001fls.2_Silent_p.L106L|DAP3_uc010pgl.1_Silent_p.L65L|DAP3_uc001flt.2_Silent_p.L72L|DAP3_uc001flu.2_Silent_p.L106L|DAP3_uc010pgm.1_Silent_p.L72L	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	106					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					GAAACCAGCCCTAGAACTTCT	0.473													9	118					0	0	0.000978159	0	0
TTC24	164118	broad.mit.edu	37	1	156555557	156555557	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:156555557C>T	uc009wsc.1	+	7	809	c.669C>T	c.(667-669)TGC>TGT	p.C223C		NM_001105669	NP_001099139	A2A3L6	TTC24_HUMAN	tetratricopeptide repeat domain 24	503							binding			pancreas(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTTCTAGTTGCCCCACGTTTA	0.522													17	57					0	0	0.00188189	0	0
BCAN	63827	broad.mit.edu	37	1	156618425	156618425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:156618425G>A	uc001fpp.2	+	6	1171	c.835G>A	c.(835-837)GAG>AAG	p.E279K	BCAN_uc001fpo.2_Missense_Mutation_p.E279K	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	279	Link 2.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTACTGCCAGGAGCGGGGTGC	0.532													17	46					0	0	0.00152264	0	0
BCAN	63827	broad.mit.edu	37	1	156621399	156621399	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:156621399C>T	uc001fpp.2	+	7	1551	c.1215C>T	c.(1213-1215)ATC>ATT	p.I405I	BCAN_uc001fpo.2_Silent_p.I405I	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	405	Glu-rich.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTGGGGCCATCTACTCCATCC	0.557													19	40					0	0	0.00278032	0	0
INSRR	3645	broad.mit.edu	37	1	156821913	156821913	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:156821913G>A	uc010pht.1	-	3	962	c.708C>T	c.(706-708)GGC>GGT	p.G236G	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Silent_p.G236G	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	236					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GCTGGCTGCAGCCCCCCAGGC	0.657													11	17					0	0	0.00244969	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156910002	156910002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:156910002C>T	uc001fqo.2	-	35	4650	c.3610G>A	c.(3610-3612)GAT>AAT	p.D1204N	ARHGEF11_uc010phu.1_Missense_Mutation_p.D620N|ARHGEF11_uc001fqn.2_Missense_Mutation_p.D1244N	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	1204					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CACTCACCATCTTCCAGAGCG	0.632													10	26					0	0	0.000978159	0	0
CD5L	922	broad.mit.edu	37	1	157805837	157805837	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:157805837A>T	uc001frk.3	-	3	307	c.164T>A	c.(163-165)ATT>AAT	p.I55N		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	55	SRCR 1.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CACGTCCTTAATGTCCCAGCC	0.607													6	85					0	0	0.00198382	0	0
OR10T2	128360	broad.mit.edu	37	1	158368669	158368669	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:158368669T>A	uc010pih.1	-	1	588	c.588A>T	c.(586-588)AAA>AAT	p.K196N		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AAGCCAGCTCTTTCACATGGG	0.433													9	27					0	0	0.000274275	0	0
OR10K2	391107	broad.mit.edu	37	1	158390471	158390471	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:158390471G>A	uc010pii.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GGATGGCAAGGAAGAAGTACA	0.483													14	26					0	0	0.000422831	0	0
OR6Y1	391112	broad.mit.edu	37	1	158516941	158516941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:158516941C>T	uc010pil.1	-	1	955	c.955G>A	c.(955-957)GGA>AGA	p.G319R		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	319	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCCCCATTTCCCTGGGGCCCA	0.453													8	30					0	0	0.000274275	0	0
SPTA1	6708	broad.mit.edu	37	1	158639326	158639326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:158639326C>T	uc001fst.1	-	14	1904	c.1705G>A	c.(1705-1707)GAA>AAA	p.E569K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	569	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GCAGCCTTTTCACGTAGGGCA	0.468													8	78					0	0	0.000274275	0	0
SPTA1	6708	broad.mit.edu	37	1	158639557	158639557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:158639557G>A	uc001fst.1	-	13	1818	c.1619C>T	c.(1618-1620)ACC>ATC	p.T540I		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	540	Spectrin 6.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AATCAATTTGGTTGCAGTCTT	0.413													10	118					0	0	0.000442599	0	0
SPTA1	6708	broad.mit.edu	37	1	158651329	158651329	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:158651329C>T	uc001fst.1	-	4	718	c.519G>A	c.(517-519)TGG>TGA	p.W173*		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	173	Spectrin 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGTCTCCAATCCACTCTAAGA	0.522													6	96					0	0	0.00198382	0	0
OR10J1	26476	broad.mit.edu	37	1	159410383	159410383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:159410383G>A	uc010piv.1	+	1	835	c.835G>A	c.(835-837)GAA>AAA	p.E279K	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	279	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GAACACCAGAGAACATGACCA	0.512													13	30					0	0	0.00185496	0	0
APCS	325	broad.mit.edu	37	1	159558471	159558471	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:159558471C>T	uc001ftv.2	+	2	741	c.645C>T	c.(643-645)GTC>GTT	p.V215V		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	215	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					GAGGATATGTCATCATCAAAC	0.473													15	48					0	0	0.000566183	0	0
CCDC19	25790	broad.mit.edu	37	1	159847181	159847181	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:159847181C>T	uc001fui.2	-	9	1134	c.1116G>A	c.(1114-1116)TTG>TTA	p.L372L	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Silent_p.L287L|CCDC19_uc001ful.2_Silent_p.L287L|CCDC19_uc009wtc.1_Silent_p.L358L	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	372	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			GCATGGCCCTCAAGCGTGCGA	0.547													27	148					0	0	0.00178596	0	0
IGSF9	57549	broad.mit.edu	37	1	159901284	159901284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:159901284G>A	uc001fur.2	-	12	1670	c.1472C>T	c.(1471-1473)GCT>GTT	p.A491V	IGSF9_uc001fuq.2_Missense_Mutation_p.A475V|IGSF9_uc001fup.2_5'UTR	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	491	Ig-like 5.|Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			TCGGGCCACAGCATTGCTGGC	0.617													10	34					0	0	0.000978159	0	0
LY9	4063	broad.mit.edu	37	1	160793333	160793333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:160793333G>A	uc001fwu.2	+	8	1627	c.1577G>A	c.(1576-1578)AGG>AAG	p.R526K	LY9_uc001fwv.2_Missense_Mutation_p.R512K|LY9_uc001fww.2_Missense_Mutation_p.R436K|LY9_uc001fwx.2_Missense_Mutation_p.R436K|LY9_uc001fwy.1_Missense_Mutation_p.R324K|LY9_uc001fwz.2_Missense_Mutation_p.R164K	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	526	Cytoplasmic (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			AGGCCTGCCAGGCAACAGCCT	0.572													6	36					0	0	0.00198382	0	0
MAEL	84944	broad.mit.edu	37	1	166961963	166961963	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:166961963C>T	uc001gdy.1	+	4	437	c.366C>T	c.(364-366)AGC>AGT	p.S122S	MAEL_uc001gdz.1_Silent_p.S91S|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	122					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						ACATTTTTAGCCATGGCGAGC	0.363													13	63					0	0	0.000308642	0	0
CREG1	8804	broad.mit.edu	37	1	167517280	167517280	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:167517280G>T	uc001gel.2	-	2	511	c.433C>A	c.(433-435)CCC>ACC	p.P145T		NM_003851	NP_003842	O75629	CREG1_HUMAN	cellular repressor of E1A-stimulated genes	145					cell proliferation|multicellular organismal development|regulation of growth|regulation of transcription from RNA polymerase II promoter	extracellular region	FMN binding|transcription corepressor activity				0						ACACAAAGGGGACTTTGTGGA	0.418													8	58					1.12685e-05	4.51358e-05	0.000274275	1	0
ADCY10	55811	broad.mit.edu	37	1	167798662	167798662	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:167798662C>T	uc001ger.2	-	26	3892	c.3594_splice	c.e26-1	p.G1198_splice	ADCY10_uc009wvj.2_Splice_Site|ADCY10_uc009wvk.2_Splice_Site_p.G1106_splice|ADCY10_uc010plj.1_Splice_Site_p.G1045_splice	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10						intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CCTCTTCTTCCTATTGGATAA	0.403													17	48					0	0	0.00188189	0	0
SELE	6401	broad.mit.edu	37	1	169696641	169696641	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:169696641A>G	uc001ggm.3	-	10	1651	c.1494T>C	c.(1492-1494)GTT>GTC	p.V498V	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	498	Extracellular (Potential).|Sushi 6.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TCTTTCCCGGAACTGCCAGGC	0.478													4	45					0	0	0.00116845	0	0
FMO2	2327	broad.mit.edu	37	1	171174721	171174721	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:171174721C>T	uc001ghk.1	+	7	1248	c.1131C>T	c.(1129-1131)TCC>TCT	p.S377S	FMO2_uc010pmd.1_Silent_p.S157S	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	377					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCCTAGGTTCCATTTTCCCAA	0.468													11	35					0	0	0.00244969	0	0
FMO1	2326	broad.mit.edu	37	1	171251294	171251294	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:171251294C>T	uc009wvz.2	+	7	1141	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	FMO1_uc010pme.1_Silent_p.F272F|FMO1_uc001ghl.2_Silent_p.F335F|FMO1_uc001ghm.2_Silent_p.F335F|FMO1_uc001ghn.2_Silent_p.F335F	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	335					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CATTTGCTTTCCCCTTCCTTG	0.418													14	53					0	0	0.000566183	0	0
TNR	7143	broad.mit.edu	37	1	175325582	175325582	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:175325582G>A	uc001gkp.1	-	14	3072	c.2991C>T	c.(2989-2991)ATC>ATT	p.I997I	TNR_uc009wwu.1_Silent_p.I997I	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	997	Fibronectin type-III 8.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CGTCAACAAGGATGGTCTCTC	0.453													18	48					0	0	0.00188189	0	0
TNR	7143	broad.mit.edu	37	1	175372465	175372465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:175372465C>T	uc001gkp.1	-	2	868	c.787G>A	c.(787-789)GAA>AAA	p.E263K	TNR_uc009wwu.1_Missense_Mutation_p.E263K|TNR_uc010pmz.1_Missense_Mutation_p.E263K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	263	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CACCTCAGTTCCCTGCAGTCC	0.637													5	13					0	0	0.00116845	0	0
TNR	7143	broad.mit.edu	37	1	175372651	175372651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:175372651C>T	uc001gkp.1	-	2	682	c.601G>A	c.(601-603)GAG>AAG	p.E201K	TNR_uc009wwu.1_Missense_Mutation_p.E201K|TNR_uc010pmz.1_Missense_Mutation_p.E201K	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	201	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CAGTAGGGCTCCGAGCAATTC	0.582													22	64					0	0	0.000586117	0	0
FAM5B	57795	broad.mit.edu	37	1	177249609	177249609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:177249609C>T	uc001glf.2	+	8	1609	c.1297C>T	c.(1297-1299)CCT>TCT	p.P433S	FAM5B_uc001glg.2_Missense_Mutation_p.P328S	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	433						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AAGCACCTTTCCTGGCACTTT	0.562													5	33					0	0	0.000602214	0	0
ABL2	27	broad.mit.edu	37	1	179084114	179084114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:179084114G>A	uc001gmj.3	-	9	1747	c.1460C>T	c.(1459-1461)CCA>CTA	p.P487L	ABL2_uc010pnf.1_Missense_Mutation_p.P487L|ABL2_uc010png.1_Missense_Mutation_p.P466L|ABL2_uc010pnh.1_Missense_Mutation_p.P466L|ABL2_uc009wxe.2_Missense_Mutation_p.P466L|ABL2_uc001gmg.3_Missense_Mutation_p.P472L|ABL2_uc001gmi.3_Missense_Mutation_p.P472L|ABL2_uc001gmh.3_Missense_Mutation_p.P451L|ABL2_uc010pne.1_Missense_Mutation_p.P451L	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	487	Protein kinase.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding	p.P451L(1)		lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	GTCAATACCTGGATATGGTGA	0.408			T	ETV6	AML								21	73					0	0	0.00278032	0	0
TDRD5	163589	broad.mit.edu	37	1	179587782	179587782	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:179587782A>G	uc001gnf.1	+	5	1130	c.880A>G	c.(880-882)ACT>GCT	p.T294A	TDRD5_uc010pnp.1_Missense_Mutation_p.T294A|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	294					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ACCTGGAGGAACTATCAGTTC	0.308													15	43					0	0	0.000958276	0	0
TDRD5	163589	broad.mit.edu	37	1	179599956	179599956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:179599956G>A	uc001gnf.1	+	7	1277	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	TDRD5_uc010pnp.1_Missense_Mutation_p.E343K|TDRD5_uc001gnh.1_5'UTR	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	343	Lotus/OST-HTH 3.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						AAATGTGACAGAACTTGTTGG	0.373													27	66					0	0	0.00127121	0	0
CACNA1E	777	broad.mit.edu	37	1	181686297	181686297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:181686297G>A	uc001gow.2	+	11	1549	c.1384G>A	c.(1384-1386)GAA>AAA	p.E462K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E369K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	462	Cytoplasmic (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCGGCACAAGGAAAGGCTTCT	0.512													13	75					0	0	0.00185496	0	0
CACNA1E	777	broad.mit.edu	37	1	181719617	181719617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:181719617C>T	uc001gow.2	+	26	3890	c.3725C>T	c.(3724-3726)GCT>GTT	p.A1242V	CACNA1E_uc009wxs.2_Missense_Mutation_p.A1130V|CACNA1E_uc001gox.1_Missense_Mutation_p.A468V|CACNA1E_uc009wxt.2_Missense_Mutation_p.A468V	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1242	III.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CATAGGAACGCTTTGGGGTAA	0.428													12	45					0	0	0.000422831	0	0
CACNA1E	777	broad.mit.edu	37	1	181725182	181725182	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:181725182G>A	uc001gow.2	+	29	4245	c.4080G>A	c.(4078-4080)TGG>TGA	p.W1360*	CACNA1E_uc009wxs.2_Nonsense_Mutation_p.W1248*|CACNA1E_uc001gox.1_Nonsense_Mutation_p.W586*|CACNA1E_uc009wxt.2_Nonsense_Mutation_p.W586*	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1360	Extracellular (Potential).|III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACATTATCTGGGCCCTGCTGA	0.512													5	17					0	0	0.000602214	0	0
CACNA1E	777	broad.mit.edu	37	1	181764139	181764139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:181764139C>T	uc001gow.2	+	45	6203	c.6038C>T	c.(6037-6039)TCC>TTC	p.S2013F	CACNA1E_uc009wxs.2_Missense_Mutation_p.S1901F|CACNA1E_uc009wxt.2_Missense_Mutation_p.S1282F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2056	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGTTACCACTCCTCCTTGCGG	0.542													6	34					0	0	0.000157383	0	0
ZNF648	127665	broad.mit.edu	37	1	182026968	182026968	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:182026968G>C	uc001goz.2	-	2	386	c.178C>G	c.(178-180)CCA>GCA	p.P60A		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	60					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGTGTTACTGGGGAGCTGCCC	0.572													3	44					0	0	6.4e-05	0	0
SMG7	9887	broad.mit.edu	37	1	183519946	183519946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:183519946C>T	uc001gqg.2	+	20	3166	c.3044C>T	c.(3043-3045)TCT>TTT	p.S1015F	SMG7_uc001gqf.2_Missense_Mutation_p.S1019F|SMG7_uc001gqh.2_Missense_Mutation_p.S969F|SMG7_uc001gqi.2_Missense_Mutation_p.S927F|SMG7_uc010poc.1_Missense_Mutation_p.S1023F	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	1015	Ser-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CTACCCAGCTCTCCTCCAACA	0.438													14	62					0	0	0.000566183	0	0
RGL1	23179	broad.mit.edu	37	1	183881286	183881286	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:183881286G>C	uc001gqo.2	+	15	1790	c.1633G>C	c.(1633-1635)GGG>CGG	p.G545R	RGL1_uc010pof.1_Missense_Mutation_p.G350R|RGL1_uc001gqm.2_Missense_Mutation_p.G580R|RGL1_uc010pog.1_Missense_Mutation_p.G543R|RGL1_uc010poh.1_Missense_Mutation_p.G543R|RGL1_uc010poi.1_Missense_Mutation_p.G516R	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	545	Ser-rich.				cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						CACTGCCAGCGGGAGCTCTGG	0.547													3	32					0	0	0.00024832	0	0
FAM129A	116496	broad.mit.edu	37	1	184764988	184764988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:184764988C>T	uc001gra.2	-	14	2104	c.1910G>A	c.(1909-1911)GGA>GAA	p.G637E	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	637					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						AAGGCTTTCTCCTTTGGCCAA	0.542													19	49					0	0	0.00188189	0	0
HMCN1	83872	broad.mit.edu	37	1	186024802	186024802	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:186024802C>T	uc001grq.1	+	45	7369	c.7140C>T	c.(7138-7140)GTC>GTT	p.V2380V		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2380					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ACTTAAGTGTCCATGGTAAGT	0.408													9	17					0	0	0.000274275	0	0
FAM5C	339479	broad.mit.edu	37	1	190067958	190067958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:190067958C>T	uc001gse.1	-	8	1723	c.1491G>A	c.(1489-1491)ATG>ATA	p.M497I	FAM5C_uc010pot.1_Missense_Mutation_p.M395I	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	497						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GCAGATATTTCATCTCGAGAT	0.498													34	110					0	0	0.00128727	0	0
CFHR5	81494	broad.mit.edu	37	1	196977706	196977706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:196977706G>A	uc001gts.3	+	10	1731	c.1603G>A	c.(1603-1605)GAT>AAT	p.D535N		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	535	Sushi 9.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AAAAACAGGGGATGCTGTTGA	0.363													18	45					0	0	0.000958276	0	0
C1orf53	388722	broad.mit.edu	37	1	197876332	197876332	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:197876332T>A	uc001guh.2	+	3	518	c.420T>A	c.(418-420)AAT>AAA	p.N140K		NM_001024594	NP_001019765	Q5VUE5	CA053_HUMAN	hypothetical protein LOC388722	140											0						AGCAATTCAATTCATATTTTT	0.264													12	64					0	0	0.000566183	0	0
NR5A2	2494	broad.mit.edu	37	1	200090020	200090020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:200090020C>T	uc001gvb.2	+	7	1521	c.1315C>T	c.(1315-1317)CGT>TGT	p.R439C	NR5A2_uc001gvc.2_Missense_Mutation_p.R393C|NR5A2_uc009wzh.2_Missense_Mutation_p.R399C|NR5A2_uc010pph.1_Missense_Mutation_p.R367C	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	439					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					GGCAAAACTTCGTTCTCTCCA	0.438													17	73					0	0	0.00074312	0	0
CHIT1	1118	broad.mit.edu	37	1	203186021	203186021	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:203186021T>C	uc001gzn.2	-	11	1493	c.1397A>G	c.(1396-1398)AAT>AGT	p.N466S	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_Intron|CHIT1_uc009xal.1_Missense_Mutation_p.N228S|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.N457S	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	466	Chitin-binding type-2.				chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						AGCGACTCAATTCCAGGTGCA	0.612											OREG0014113	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	46					0	0	0.000157383	0	0
REN	5972	broad.mit.edu	37	1	204125862	204125862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:204125862C>T	uc001haq.2	-	7	805	c.761G>A	c.(760-762)GGG>GAG	p.G254E		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	254					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	GTGGAAATTCCCTTCGTAATG	0.502													7	43					0	0	0.000157383	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204425175	204425175	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:204425175C>T	uc001haw.2	-	12	2231	c.1752G>A	c.(1750-1752)AAG>AAA	p.K584K	PIK3C2B_uc010pqv.1_Silent_p.K584K|PIK3C2B_uc001hax.1_Silent_p.K584K|PIK3C2B_uc009xbd.1_RNA	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	584					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			CTTCCACGACCTTCTCTGGGA	0.572													6	22					0	0	0.00198382	0	0
CDK18	5129	broad.mit.edu	37	1	205497008	205497008	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:205497008C>T	uc001hcr.2	+	9	1125	c.906C>T	c.(904-906)CTC>CTT	p.L302L	CDK18_uc001hcp.2_Silent_p.L272L|CDK18_uc001hcq.2_Silent_p.L272L|CDK18_uc010prj.1_Silent_p.L183L|CDK18_uc001hcs.2_Silent_p.L183L|CDK18_uc009xbm.1_Silent_p.L197L|CDK18_uc001hct.2_5'Flank	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	270	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						AGAACCTGCTCATCAACGAGA	0.642													7	51					0	0	0.00198382	0	0
SLC26A9	115019	broad.mit.edu	37	1	205896728	205896728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:205896728C>T	uc001hdq.2	-	10	1221	c.1107G>A	c.(1105-1107)ATG>ATA	p.M369I	SLC26A9_uc001hdo.2_Missense_Mutation_p.M37I|SLC26A9_uc001hdp.2_Missense_Mutation_p.M369I	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	369						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CGAGAGCGATCATCTCCTGCA	0.557													7	28					0	0	0.00198382	0	0
SRGAP2	23380	broad.mit.edu	37	1	206632142	206632142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:206632142C>T	uc001hdy.2	+	19	2753	c.2420C>T	c.(2419-2421)TCC>TTC	p.S807F	SRGAP2_uc010pru.1_Missense_Mutation_p.S730F	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	894	Ser-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					GATAAGTGTTCCATCAGTGGG	0.617													7	18					0	0	0.000442599	0	0
KCNH1	3756	broad.mit.edu	37	1	211093211	211093211	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:211093211C>T	uc001hib.2	-	7	1403	c.1233G>A	c.(1231-1233)AAG>AAA	p.K411K	KCNH1_uc001hic.2_Silent_p.K384K	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	411	Extracellular (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TGCGGATTGTCTTGGTGTCCT	0.547													5	48					0	0	0.00198382	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213251135	213251135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:213251135C>T	uc010ptr.1	+	3	398	c.239C>T	c.(238-240)CCA>CTA	p.P80L	RPS6KC1_uc001hkd.2_Missense_Mutation_p.P68L|RPS6KC1_uc010pts.1_5'UTR|RPS6KC1_uc010ptt.1_5'UTR|RPS6KC1_uc010ptu.1_Intron|RPS6KC1_uc010ptv.1_5'UTR|RPS6KC1_uc001hke.2_5'UTR	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	80	PX.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		TTGTTTCCTCCATTTGCTAAA	0.254													13	62					0	0	0.000308642	0	0
USH2A	7399	broad.mit.edu	37	1	215901467	215901467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:215901467G>A	uc001hku.1	-	61	12358	c.11971C>T	c.(11971-11973)CCC>TCC	p.P3991S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3991	Fibronectin type-III 25.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATGCCATTGGGAGATTCTGGC	0.488										HNSCC(13;0.011)			10	57					0	0	0.000442599	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696098	222696098	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:222696098T>C	uc001hnh.1	-	9	2078	c.2020A>G	c.(2020-2022)AGC>GGC	p.S674G		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	674					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TTCTTGCTGCTTGTAGGAGAA	0.542													44	281					0	0	0.000781405	0	0
DISP1	84976	broad.mit.edu	37	1	223176933	223176934	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:223176933_223176934GG>TT	uc001hnu.1	+	8	2341_2342	c.2194_2195GG>TT	c.(2194-2196)GGG>TTG	p.G732L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	732	Helical; (Potential).				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTGTAGGTGGGGCCTACATT	0.426													17	503					0	0	6.4e-05	0	0
SUSD4	55061	broad.mit.edu	37	1	223442007	223442007	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:223442007G>A	uc001hnx.2	-	3	1006	c.372C>T	c.(370-372)ATC>ATT	p.I124I	SUSD4_uc001hny.3_Silent_p.I124I|SUSD4_uc010puw.1_5'UTR|SUSD4_uc001hnz.2_Silent_p.I124I|SUSD4_uc010pux.1_Silent_p.I53I	NM_017982	NP_060452	Q5VX71	SUSD4_HUMAN	sushi domain containing 4 isoform a	124	Sushi 2.|Extracellular (Potential).					integral to membrane					0				GBM - Glioblastoma multiforme(131;0.0611)		CGATTTGAGGGATACGGCAAT	0.388													13	82					0	0	0.000566183	0	0
OBSCN	84033	broad.mit.edu	37	1	228467961	228467961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:228467961C>T	uc009xez.1	+	29	7789	c.7745C>T	c.(7744-7746)TCC>TTC	p.S2582F	OBSCN_uc001hsn.2_Missense_Mutation_p.S2582F|OBSCN_uc001hsp.1_Missense_Mutation_p.S281F|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2582	Ig-like 25.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGTGAGCTGTCCCACGAGGAT	0.637													5	19					0	0	0.000602214	0	0
OBSCN	84033	broad.mit.edu	37	1	228505436	228505436	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:228505436C>T	uc009xez.1	+	52	13877	c.13833C>T	c.(13831-13833)CCC>CCT	p.P4611P	OBSCN_uc001hsn.2_Silent_p.P4611P	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4611	Fibronectin type-III 3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TTCACCTGCCCCAGACAGTGC	0.677													21	50					0	0	0.000720815	0	0
KCNK1	3775	broad.mit.edu	37	1	233802606	233802606	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:233802606G>A	uc010pxo.1	+	2	789	c.621G>A	c.(619-621)GAG>GAA	p.E207E	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	207						voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	CAGTCCTGGAGGATGACTGGA	0.507													8	82					0	0	0.000673444	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367362	234367362	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:234367362G>A	uc001hwa.1	+	2	504	c.276G>A	c.(274-276)AGG>AGA	p.R92R	SLC35F3_uc001hvy.1_Silent_p.R161R	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	92					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TGACCTTCAGGAAGTTCGACG	0.602													26	89					0	0	0.0024448	0	0
TBCE	6905	broad.mit.edu	37	1	235543457	235543457	+	Silent	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:235543457C>G	uc001hwz.1	+	2	216	c.93C>G	c.(91-93)CCC>CCG	p.P31P	TBCE_uc010pxq.1_RNA|TBCE_uc001hxa.1_Silent_p.P31P|TBCE_uc010pxr.1_Silent_p.P31P|TBCE_uc001hxb.1_5'UTR	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	31	CAP-Gly.				'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			TTGTCCCTCCCGTGGCAGGTA	0.308													3	61					0	0	6.4e-05	0	0
RYR2	6262	broad.mit.edu	37	1	237801733	237801734	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:237801733_237801734GG>AA	uc001hyl.1	+	45	6989_6990	c.6869_6870GG>AA	c.(6868-6870)TGG>TAA	p.W2290*		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2290	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GACATTGGGTGGAACCCAGTTG	0.406													10	176					0	0	6.4e-05	0	0
CHRM3	1131	broad.mit.edu	37	1	240071426	240071426	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:240071426C>T	uc001hyp.2	+	5	1454	c.675C>T	c.(673-675)TTC>TTT	p.F225F		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	225	Extracellular (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	TCATTCAGTTCCTCAGTGAGC	0.458													6	100					0	0	0.00116845	0	0
FMN2	56776	broad.mit.edu	37	1	240370649	240370649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:240370649C>T	uc010pyd.1	+	5	2762	c.2537C>T	c.(2536-2538)TCC>TTC	p.S846F	FMN2_uc010pye.1_Missense_Mutation_p.S850F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	846	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CACTCTGTTTCCTCTGCCTTT	0.567													9	41					0	0	0.000442599	0	0
WDR64	128025	broad.mit.edu	37	1	241959637	241959637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:241959637G>A	uc001hzf.1	+	16	1939	c.1786G>A	c.(1786-1788)GGA>AGA	p.G596R	WDR64_uc001hzg.1_Missense_Mutation_p.G509R	NM_144625	NP_653226	B1ANS9	WDR64_HUMAN	WD repeat domain 64	1043										skin(1)	1	Ovarian(103;0.103)	all_cancers(173;0.0121)	OV - Ovarian serous cystadenocarcinoma(106;0.0116)			TGGCATTACAGGAAAGAAGAA	0.388													15	41					0	0	0.00074312	0	0
AHCTF1	25909	broad.mit.edu	37	1	247081627	247081627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:247081627G>A	uc001ibu.1	-	1	53	c.46C>T	c.(46-48)CCA>TCA	p.P16S	AHCTF1_uc001ibv.1_Missense_Mutation_p.P25S	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	16	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			GTCACTTCTGGAAATGGCAGG	0.373													8	64					0	0	0.000442599	0	0
NLRP3	114548	broad.mit.edu	37	1	247582349	247582349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:247582349G>A	uc001icr.2	+	3	391	c.253G>A	c.(253-255)GAG>AAG	p.E85K	NLRP3_uc001ics.2_Missense_Mutation_p.E85K|NLRP3_uc001icu.2_Missense_Mutation_p.E85K|NLRP3_uc001icw.2_Missense_Mutation_p.E85K|NLRP3_uc001icv.2_Missense_Mutation_p.E85K|NLRP3_uc010pyw.1_Missense_Mutation_p.E83K|NLRP3_uc001ict.1_Missense_Mutation_p.E83K	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	85	DAPIN.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AGACCTTTATGAGAAAGCAAA	0.388													12	40					0	0	0.000422831	0	0
NLRP3	114548	broad.mit.edu	37	1	247588501	247588501	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:247588501C>T	uc001icr.2	+	5	1894	c.1756C>T	c.(1756-1758)CAG>TAG	p.Q586*	NLRP3_uc001ics.2_Nonsense_Mutation_p.Q586*|NLRP3_uc001icu.2_Nonsense_Mutation_p.Q586*|NLRP3_uc001icw.2_Nonsense_Mutation_p.Q586*|NLRP3_uc001icv.2_Nonsense_Mutation_p.Q586*|NLRP3_uc010pyw.1_Nonsense_Mutation_p.Q584*|NLRP3_uc001ict.1_Nonsense_Mutation_p.Q584*	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	586					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CCTGGTAAACCAGGAGAGGAC	0.448													5	54					0	0	0.000602214	0	0
OR2T6	254879	broad.mit.edu	37	1	248551607	248551607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:248551607G>A	uc001iei.1	+	1	698	c.698G>A	c.(697-699)GGG>GAG	p.G233E		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCGGCTGAAGGGAGGAAGAAG	0.512													16	61					0	0	0.000422831	0	0
OR2T34	127068	broad.mit.edu	37	1	248737443	248737443	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:248737443G>A	uc001iep.1	-	1	616	c.616C>T	c.(616-618)CTG>TTG	p.L206L		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATGCAGCACAGGTACGTGAGC	0.527													32	88					0	0	0.00195071	0	0
OR2T34	127068	broad.mit.edu	37	1	248737464	248737464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:248737464G>A	uc001iep.1	-	1	595	c.595C>T	c.(595-597)CTC>TTC	p.L199F		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	199	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATCTTATAGAGGGAGACGTCA	0.517													8	106					0	0	0.00136819	0	0
OR2T11	127077	broad.mit.edu	37	1	248789896	248789896	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:248789896G>A	uc001ier.1	-	1	534	c.534C>T	c.(532-534)ATC>ATT	p.I178I		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAACTGCTGGGATCTCACAGA	0.498													12	29					0	0	0.00185496	0	0
OR2T11	127077	broad.mit.edu	37	1	248790161	248790161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr1:248790161G>A	uc001ier.1	-	1	269	c.269C>T	c.(268-270)TCC>TTC	p.S90F		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGCCACAAAGGAAATGATCTT	0.493													5	19					0	0	0.000602214	0	0
GTPBP4	23560	broad.mit.edu	37	10	1043163	1043163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:1043163C>T	uc001ift.2	+	5	547	c.476C>T	c.(475-477)TCC>TTC	p.S159F	GTPBP4_uc010qac.1_5'UTR|GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Missense_Mutation_p.S43F|GTPBP4_uc010qae.1_Missense_Mutation_p.S112F	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	159					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		CAGCATTTATCCCGTTTGCCA	0.378													23	234					0	0	0.001512	0	0
TUBAL3	79861	broad.mit.edu	37	10	5436411	5436411	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:5436411C>T	uc001ihy.2	-	4	450	c.410G>A	c.(409-411)GGT>GAT	p.G137D	TUBAL3_uc001ihz.2_Missense_Mutation_p.G97D	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	137					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						CTGAAGTCCACCACACTGTTC	0.443													9	49					0	0	0.000673444	0	0
TUBAL3	79861	broad.mit.edu	37	10	5443047	5443047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:5443047C>T	uc001ihy.2	-	2	47	c.7G>A	c.(7-9)GAG>AAG	p.E3K	TUBAL3_uc001ihz.2_Intron	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	3					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						GAAAGGCACTCCCTCTAAAAT	0.393													9	59					0	0	0.000978159	0	0
RBM17	84991	broad.mit.edu	37	10	6151963	6151963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:6151963C>T	uc001ijb.2	+	7	803	c.577C>T	c.(577-579)CCT>TCT	p.P193S	RBM17_uc010qav.1_Missense_Mutation_p.P193S	NM_032905	NP_116294	Q96I25	SPF45_HUMAN	RNA binding motif protein 17	193					mRNA processing|RNA splicing	spliceosomal complex	nucleotide binding|protein binding|RNA binding				0						CCGAGATTTTCCTTATGAAGA	0.428													5	82					0	0	0.00198382	0	0
PRKCQ	5588	broad.mit.edu	37	10	6540419	6540419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:6540419C>T	uc001ijj.1	-	5	556	c.481G>A	c.(481-483)GAG>AAG	p.E161K	PRKCQ_uc009xim.1_Missense_Mutation_p.E161K|PRKCQ_uc001iji.1_Missense_Mutation_p.E194K|PRKCQ_uc009xin.1_Missense_Mutation_p.E125K|PRKCQ_uc010qax.1_Missense_Mutation_p.E36K	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	161	Phorbol-ester/DAG-type 1.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						GCAGTGAACTCGTGGCACTTG	0.522													8	66					0	0	0.000442599	0	0
SFMBT2	57713	broad.mit.edu	37	10	7262419	7262419	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:7262419G>A	uc009xio.1	-	11	1375	c.1284C>T	c.(1282-1284)GCC>GCT	p.A428A	SFMBT2_uc001ijn.1_Silent_p.A428A|SFMBT2_uc010qay.1_Intron	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	428	MBT 4.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						TCACAACGGAGGCCACACACA	0.517													10	90					0	0	0.000978159	0	0
SEC61A2	55176	broad.mit.edu	37	10	12203060	12203061	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:12203060_12203061GG>TT	uc001ile.2	+	10	1254_1255	c.1107_1108GG>TT	c.(1105-1110)TTGGGG>TTTTGG	p.369_370LG>FW	SEC61A2_uc010qbq.1_Missense_Mutation_p.347_348LG>FW|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Missense_Mutation_p.369_370LG>FW	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	369_370	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				TCTTCATGTTGGGGTCATGTGC	0.416													13	514					0	0	6.4e-05	0	0
FAM107B	83641	broad.mit.edu	37	10	14816576	14816576	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:14816576G>A	uc001ina.1	-	1	321	c.87C>T	c.(85-87)GCC>GCT	p.A29A	FAM107B_uc010qbu.1_RNA	NM_031453	NP_113641	Q9H098	F107B_HUMAN	hypothetical protein LOC83641	Error:Variant_position_missing_in_Q9H098_after_alignment										breast(4)	4						TCCCAAAACAGGCGAGCAGAG	0.532													5	45					0	0	0.000602214	0	0
ITGA8	8516	broad.mit.edu	37	10	15590479	15590479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:15590479C>T	uc001ioc.1	-	27	2855	c.2855G>A	c.(2854-2856)CGA>CAA	p.R952Q	ITGA8_uc010qcb.1_Missense_Mutation_p.R937Q	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	952	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GGCCCATAATCGTGACCTGAC	0.478													11	51					0	0	0.00136819	0	0
ITGA8	8516	broad.mit.edu	37	10	15649739	15649739	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:15649739G>A	uc001ioc.1	-	17	1701	c.1701C>T	c.(1699-1701)GTC>GTT	p.V567V	ITGA8_uc010qcb.1_Silent_p.V552V	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	567	Extracellular (Potential).		V -> L.		cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CAAGAGGGAAGACGCGATGAG	0.458													8	105					0	0	0.000274275	0	0
PTER	9317	broad.mit.edu	37	10	16547034	16547034	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:16547034G>A	uc001iog.1	+	5	921	c.714G>A	c.(712-714)AAG>AAA	p.K238K	PTER_uc001ioh.1_Silent_p.K238K|PTER_uc001ioi.1_Silent_p.K238K|PTER_uc009xjp.1_Intron	NM_030664	NP_109589	Q96BW5	PTER_HUMAN	phosphotriesterase related	238					catabolic process		hydrolase activity, acting on ester bonds|zinc ion binding			ovary(2)	2						TTCTTGATAAGAAAGAGCTCT	0.388													8	113					0	0	0.00136819	0	0
CUBN	8029	broad.mit.edu	37	10	17085910	17085910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:17085910G>A	uc001ioo.2	-	26	3797	c.3745C>T	c.(3745-3747)CGT>TGT	p.R1249C		NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	1249	CUB 7.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CCACTAGAACGAATAAGAGGG	0.428													10	42					0	0	0.000978159	0	0
KIAA1217	56243	broad.mit.edu	37	10	24762403	24762403	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:24762403A>C	uc001iru.3	+	6	1496	c.1093A>C	c.(1093-1095)AGC>CGC	p.S365R	KIAA1217_uc001irs.2_Missense_Mutation_p.S285R|KIAA1217_uc001irt.3_Missense_Mutation_p.S365R|KIAA1217_uc010qcy.1_Missense_Mutation_p.S365R|KIAA1217_uc010qcz.1_Missense_Mutation_p.S365R|KIAA1217_uc001irv.1_Missense_Mutation_p.S215R|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.S83R|KIAA1217_uc001irz.2_Missense_Mutation_p.S83R|KIAA1217_uc001irx.2_Missense_Mutation_p.S83R|KIAA1217_uc001iry.2_Missense_Mutation_p.S83R	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	365					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						TCCAAGCCCAAGCGCCATTTT	0.502													8	51					0	0	0.000274275	0	0
KIAA1217	56243	broad.mit.edu	37	10	24810719	24810719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:24810719C>T	uc001iru.3	+	12	2720	c.2317C>T	c.(2317-2319)CCA>TCA	p.P773S	KIAA1217_uc001irs.2_Missense_Mutation_p.P693S|KIAA1217_uc001irt.3_Missense_Mutation_p.P738S|KIAA1217_uc010qcy.1_Missense_Mutation_p.P738S|KIAA1217_uc010qcz.1_Missense_Mutation_p.P738S|KIAA1217_uc001irv.1_Missense_Mutation_p.P588S|KIAA1217_uc010qda.1_Intron|KIAA1217_uc001irw.2_Missense_Mutation_p.P456S|KIAA1217_uc001irz.2_Missense_Mutation_p.P456S|KIAA1217_uc001irx.2_Missense_Mutation_p.P456S|KIAA1217_uc001iry.2_Missense_Mutation_p.P456S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	773					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AGGAGAATTTCCAACCTTACA	0.537													28	118					0	0	0.00127121	0	0
KIAA1217	56243	broad.mit.edu	37	10	24816930	24816930	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:24816930G>A	uc001iru.3	+	14	3367	c.2964G>A	c.(2962-2964)GAG>GAA	p.E988E	KIAA1217_uc001irs.2_Silent_p.E908E|KIAA1217_uc001irt.3_Silent_p.E953E|KIAA1217_uc010qcy.1_Silent_p.E953E|KIAA1217_uc010qcz.1_Silent_p.E953E|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Silent_p.E671E|KIAA1217_uc001irz.2_Silent_p.E671E|KIAA1217_uc001irx.2_Silent_p.E671E|KIAA1217_uc001iry.2_Silent_p.E671E	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	988					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						AAGAGTTTGAGAAGCTCCTAG	0.453													19	97					0	0	0.000586117	0	0
GAD2	2572	broad.mit.edu	37	10	26589885	26589885	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:26589885T>A	uc001isp.2	+	16	2256	c.1753T>A	c.(1753-1755)TTA>ATA	p.L585I	GAD2_uc001isq.2_Missense_Mutation_p.L585I	NM_001134366	NP_001127838	Q05329	DCE2_HUMAN	glutamate decarboxylase 2	585					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion	cell junction|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|cytosol|Golgi membrane|presynaptic membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			central_nervous_system(1)|skin(1)	2					L-Glutamic Acid(DB00142)	TGGACAAGATTTATAATAACC	0.398													7	69					0	0	0.000274275	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702994	27702994	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:27702994C>T	uc001itu.2	-	1	304	c.186G>A	c.(184-186)TCG>TCA	p.S62S		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	62					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CATCCTGCTCCGACGCCAGGG	0.697													14	37					0	0	0.00244969	0	0
MKX	283078	broad.mit.edu	37	10	28023495	28023495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:28023495C>T	uc001ity.3	-	5	953	c.728G>A	c.(727-729)GGA>GAA	p.G243E	MKX_uc001itx.3_Missense_Mutation_p.G243E	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	243					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCTTGTTTTTCCCATCATGGT	0.448													11	85					0	0	0.000673444	0	0
ARMC4	55130	broad.mit.edu	37	10	28229653	28229653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:28229653G>A	uc009xky.2	-	13	1923	c.1825C>T	c.(1825-1827)CGC>TGC	p.R609C	ARMC4_uc010qds.1_Missense_Mutation_p.R134C|ARMC4_uc010qdt.1_Missense_Mutation_p.R301C|ARMC4_uc001itz.2_Missense_Mutation_p.R609C|ARMC4_uc010qdu.1_Missense_Mutation_p.R301C	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	609							binding			ovary(4)|skin(2)	6						GCCCCACAGCGAGCCACTTCC	0.507													6	57					0	0	0.00198382	0	0
ARMC4	55130	broad.mit.edu	37	10	28284008	28284008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:28284008C>T	uc009xky.2	-	2	162	c.64G>A	c.(64-66)GAA>AAA	p.E22K	ARMC4_uc001itz.2_Missense_Mutation_p.E22K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	22							binding			ovary(4)|skin(2)	6						GGGGTGATTTCGAGGATTCCA	0.453													7	39					0	0	0.000442599	0	0
KIAA1462	57608	broad.mit.edu	37	10	30315848	30315848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:30315848G>A	uc001iux.2	-	2	3288	c.3229C>T	c.(3229-3231)CCC>TCC	p.P1077S	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P939S|KIAA1462_uc009xle.1_Missense_Mutation_p.P1077S	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1077										ovary(4)	4						TCACCTGGGGGGATTTCTATT	0.612													12	84					0	0	0.000308642	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317559	30317559	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:30317559C>T	uc001iux.2	-	2	1577	c.1518G>A	c.(1516-1518)GGG>GGA	p.G506G	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Silent_p.G368G|KIAA1462_uc009xle.1_Silent_p.G506G	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	506										ovary(4)	4						TTTCCCCATCCCCGGGGGGCT	0.642													8	63					0	0	0.000673444	0	0
MTPAP	55149	broad.mit.edu	37	10	30629251	30629251	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:30629251C>T	uc001iva.3	-	3	522	c.459G>A	c.(457-459)TTG>TTA	p.L153L	MTPAP_uc001ivb.3_Silent_p.L283L|MTPAP_uc001ivc.2_Silent_p.L153L	NM_018109	NP_060579	Q9NVV4	PAPD1_HUMAN	PAP associated domain containing 1 precursor	153					cell death|histone mRNA catabolic process|mRNA polyadenylation|transcription, DNA-dependent	mitochondrion	ATP binding|magnesium ion binding|manganese ion binding|polynucleotide adenylyltransferase activity|protein homodimerization activity|RNA binding|UTP binding			ovary(1)	1						TCTGGTTTTTCAACTTCAGAT	0.423													9	101					0	0	0.000673444	0	0
MAP3K8	1326	broad.mit.edu	37	10	30749660	30749660	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:30749660G>A	uc001ivi.1	+	9	1995	c.1299G>A	c.(1297-1299)GAG>GAA	p.E433E	MAP3K8_uc009xlf.1_Silent_p.E433E|MAP3K8_uc001ivj.1_Silent_p.E433E	NM_005204	NP_005195	P41279	M3K8_HUMAN	mitogen-activated protein kinase kinase kinase	433			Missing (in oncogenic form).		cell cycle|T cell costimulation	cytosol	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			breast(3)|central_nervous_system(1)	4		Prostate(175;0.151)				GAAGCACCGAGGAATCTGAGA	0.458													9	57					0	0	0.000274275	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430974	37430974	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:37430974C>T	uc001iza.1	+	7	1080	c.981C>T	c.(979-981)ATC>ATT	p.I327I		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	383						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity	p.I327N(1)|p.I327I(1)		ovary(7)|breast(1)|skin(1)	9						CTAGGAAGATCGCATGGGAGA	0.433													12	75					0	0	0.00185496	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37431005	37431005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:37431005G>A	uc001iza.1	+	7	1111	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	394						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CACACCTAGGGAAATTATGAG	0.418													12	73					0	0	0.00136819	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37433955	37433955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:37433955G>A	uc001iza.1	+	8	1357	c.1258G>A	c.(1258-1260)GAA>AAA	p.E420K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	476						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CAAACAAGAGGAAGATGAAGA	0.264													7	102					0	0	0.000442599	0	0
ANUBL1	93550	broad.mit.edu	37	10	46148466	46148466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:46148466C>T	uc001jcp.3	-	3	468	c.226G>A	c.(226-228)GAA>AAA	p.E76K	ANUBL1_uc001jcm.3_Missense_Mutation_p.E76K|ANUBL1_uc009xmu.2_Missense_Mutation_p.E2K|ANUBL1_uc001jcn.3_Missense_Mutation_p.E2K|ANUBL1_uc001jco.3_Missense_Mutation_p.E76K|ANUBL1_uc001jcq.2_RNA|ANUBL1_uc001jcr.2_Missense_Mutation_p.E76K	NM_001128324	NP_001121796	Q86XD8	ANUB1_HUMAN	AN1, ubiquitin-like, homolog	76	Ubiquitin-like.						zinc ion binding				0						TTTTCAAGTTCCATGTTATTC	0.313													8	63					0	0	0.000673444	0	0
FRMPD2	143162	broad.mit.edu	37	10	49450299	49450299	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:49450299A>C	uc001jgi.2	-	5	579	c.472T>G	c.(472-474)TGT>GGT	p.C158G	FRMPD2_uc001jgh.2_Missense_Mutation_p.C127G|FRMPD2_uc001jgj.2_Missense_Mutation_p.C136G	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	158	KIND.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		TGAACCCGACAAGCTTCCAGA	0.582													8	67					0	0	0.000274275	0	0
C10orf72	196740	broad.mit.edu	37	10	50255086	50255086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:50255086G>A	uc001jhf.2	-	7	808	c.779C>T	c.(778-780)CCG>CTG	p.P260L		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	260	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						GGGGGCTATCGGAGCTGTGGA	0.478													21	155					0	0	0.00278032	0	0
PCDH15	65217	broad.mit.edu	37	10	55591215	55591215	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:55591215G>A	uc001jju.1	-	30	4457	c.4062C>T	c.(4060-4062)ATC>ATT	p.I1354I	PCDH15_uc010qhq.1_Silent_p.I1359I|PCDH15_uc010qhr.1_Silent_p.I1354I|PCDH15_uc010qhs.1_Silent_p.I1366I|PCDH15_uc010qht.1_Silent_p.I1361I|PCDH15_uc010qhu.1_Silent_p.I1354I|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Silent_p.I1354I|PCDH15_uc010qhw.1_Silent_p.I1317I|PCDH15_uc010qhx.1_Silent_p.I1283I|PCDH15_uc010qhy.1_Silent_p.I1359I|PCDH15_uc010qhz.1_Silent_p.I1354I|PCDH15_uc010qia.1_Silent_p.I1332I|PCDH15_uc010qib.1_Silent_p.I1332I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1354	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTGGAGTCCGGATCTCCAGAA	0.433										HNSCC(58;0.16)			5	54					0	0	0.000602214	0	0
PCDH15	65217	broad.mit.edu	37	10	55955563	55955563	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:55955563A>G	uc001jju.1	-	11	1580	c.1185T>C	c.(1183-1185)TTT>TTC	p.F395F	PCDH15_uc010qhq.1_Silent_p.F400F|PCDH15_uc010qhr.1_Silent_p.F395F|PCDH15_uc010qhs.1_Silent_p.F400F|PCDH15_uc010qht.1_Silent_p.F395F|PCDH15_uc010qhu.1_Silent_p.F395F|PCDH15_uc001jjv.1_Silent_p.F373F|PCDH15_uc010qhv.1_Silent_p.F395F|PCDH15_uc010qhw.1_Silent_p.F358F|PCDH15_uc010qhx.1_Silent_p.F395F|PCDH15_uc010qhy.1_Silent_p.F400F|PCDH15_uc010qhz.1_Silent_p.F395F|PCDH15_uc010qia.1_Silent_p.F373F|PCDH15_uc010qib.1_Silent_p.F373F|PCDH15_uc001jjw.2_Silent_p.F395F	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	395	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGGGCATTGTAAAATATGGAC	0.413										HNSCC(58;0.16)			5	62					0	0	0.000602214	0	0
BICC1	80114	broad.mit.edu	37	10	60558161	60558161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:60558161C>T	uc001jki.1	+	11	1369	c.1369C>T	c.(1369-1371)CTT>TTT	p.L457F	BICC1_uc001jkj.1_Missense_Mutation_p.L98F	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	457					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						TATTACAGGTCTTTTGGGACC	0.353													10	61					0	0	0.00185496	0	0
BICC1	80114	broad.mit.edu	37	10	60560789	60560789	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:60560789G>A	uc001jki.1	+	14	1998	c.1998G>A	c.(1996-1998)ACG>ACA	p.T666T	BICC1_uc001jkj.1_Silent_p.T307T	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	666					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						TGCAAGGCACGAAAAACTCAC	0.383													7	29					0	0	0.000978159	0	0
FAM13C	220965	broad.mit.edu	37	10	61014160	61014160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:61014160C>T	uc001jkn.2	-	12	1414	c.1280G>A	c.(1279-1281)CGA>CAA	p.R427Q	FAM13C_uc001jko.2_Missense_Mutation_p.R329Q|FAM13C_uc010qid.1_Missense_Mutation_p.R344Q|FAM13C_uc010qie.1_Missense_Mutation_p.R344Q|FAM13C_uc010qif.1_Missense_Mutation_p.R449Q|FAM13C_uc001jkp.2_Missense_Mutation_p.R344Q	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	427										ovary(2)	2						AATTCTGTATCGGTCATAAAG	0.353													11	107					0	0	0.00136819	0	0
SLC16A9	220963	broad.mit.edu	37	10	61414278	61414278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:61414278C>T	uc010qig.1	-	5	955	c.506G>A	c.(505-507)GGA>GAA	p.G169E		NM_194298	NP_919274	Q7RTY1	MOT9_HUMAN	solute carrier family 16 (monocarboxylic acid	169	Helical; (Potential).				urate metabolic process	integral to membrane|plasma membrane	symporter activity			skin(2)|ovary(1)	3						CAGCAAGCATCCATCCAGTCC	0.438													8	106					0	0	0.00136819	0	0
ANK3	288	broad.mit.edu	37	10	61829367	61829367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:61829367C>T	uc001jky.2	-	37	11464	c.11272G>A	c.(11272-11274)GAA>AAA	p.E3758K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3758					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GTTATAGTTTCATTTTCTAAT	0.378													15	127					0	0	0.000566183	0	0
ANK3	288	broad.mit.edu	37	10	62029966	62029966	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:62029966T>A	uc001jky.2	-	5	628	c.436A>T	c.(436-438)ATG>TTG	p.M146L	ANK3_uc010qih.1_Missense_Mutation_p.M129L|ANK3_uc001jkz.3_Missense_Mutation_p.M140L|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	146	ANK 3.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGGCTGCCATATACAATGGC	0.398													5	58					0	0	0.00198382	0	0
JMJD1C	221037	broad.mit.edu	37	10	64966362	64966362	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:64966362G>A	uc001jmn.2	-	10	5367	c.5067C>T	c.(5065-5067)AAC>AAT	p.N1689N	JMJD1C_uc001jml.2_Silent_p.N1470N|JMJD1C_uc001jmm.2_Silent_p.N1401N|JMJD1C_uc010qiq.1_Silent_p.N1507N|JMJD1C_uc009xpi.2_Silent_p.N1507N|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Silent_p.N726N	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1689					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TACTATTACTGTTGCTTTGCA	0.363													10	69					0	0	0.00185496	0	0
CTNNA3	29119	broad.mit.edu	37	10	68979493	68979493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:68979493C>T	uc009xpn.1	-	6	838	c.715G>A	c.(715-717)GAC>AAC	p.D239N	CTNNA3_uc001jmw.2_Missense_Mutation_p.D239N|CTNNA3_uc001jmx.3_Missense_Mutation_p.D239N|CTNNA3_uc009xpo.1_Missense_Mutation_p.D99N|CTNNA3_uc001jna.2_Missense_Mutation_p.D251N	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	239					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CAAACTGTGTCCTTGCTTGCT	0.453													8	71					0	0	0.000274275	0	0
CTNNA3	29119	broad.mit.edu	37	10	69366778	69366778	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:69366778G>A	uc009xpn.1	-	3	252	c.129C>T	c.(127-129)AAC>AAT	p.N43N	CTNNA3_uc001jmw.2_Silent_p.N43N|CTNNA3_uc001jmx.3_Silent_p.N43N|CTNNA3_uc009xpo.1_5'UTR|CTNNA3_uc001jna.2_Silent_p.N55N	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	43					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TGCTGGAAGGGTTCTGGGGAC	0.403													7	63					0	0	0.000274275	0	0
CTNNA3	29119	broad.mit.edu	37	10	69407235	69407235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:69407235G>A	uc009xpn.1	-	2	160	c.37C>T	c.(37-39)CCT>TCT	p.P13S	CTNNA3_uc001jmw.2_Missense_Mutation_p.P13S|CTNNA3_uc001jmx.3_Missense_Mutation_p.P13S|CTNNA3_uc009xpo.1_5'UTR|CTNNA3_uc001jna.2_Missense_Mutation_p.P25S	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	13					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AGATCCTGAGGATCGATATTC	0.388													9	116					0	0	0.000673444	0	0
DDX50	79009	broad.mit.edu	37	10	70670972	70670972	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:70670972A>G	uc001jou.2	+	4	716	c.609A>G	c.(607-609)CAA>CAG	p.Q203Q	DDX50_uc001jot.2_Silent_p.Q203Q|DDX50_uc010qjc.1_Silent_p.Q203Q	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	203	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						AAAGAAATCAAGAAACAATTA	0.373													12	145					0	0	0.00136819	0	0
C10orf27	219793	broad.mit.edu	37	10	72541687	72541687	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:72541687G>A	uc001jrj.1	-	4	537	c.147C>T	c.(145-147)TTC>TTT	p.F49F	C10orf27_uc010qjm.1_Silent_p.F49F|C10orf27_uc009xqh.1_RNA|C10orf27_uc010qjn.1_Silent_p.F49F|C10orf27_uc009xqi.1_RNA|C10orf27_uc010qjo.1_Silent_p.F38F|C10orf27_uc009xqj.1_Silent_p.F38F|C10orf27_uc010qjp.1_Silent_p.F38F	NM_152710	NP_689923	Q96M53	SPATL_HUMAN	stromal protein associated with thymii and lymph	49					cell differentiation|multicellular organismal development|spermatogenesis	cytosol				skin(1)	1						GGATCCGCTCGAAATCCACAA	0.602													6	57					0	0	0.000157383	0	0
CDH23	64072	broad.mit.edu	37	10	73330619	73330619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:73330619G>A	uc001jrx.3	+	8	1074	c.697G>A	c.(697-699)GAC>AAC	p.D233N	CDH23_uc001jrw.3_Missense_Mutation_p.D233N|CDH23_uc009xql.2_Missense_Mutation_p.D278N	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	233	Cadherin 2.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCAGGACATGGACCCCATCTT	0.537											OREG0020254	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	43					0	0	0.000274275	0	0
OIT3	170392	broad.mit.edu	37	10	74684190	74684190	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:74684190G>A	uc001jte.1	+	7	1373	c.1155G>A	c.(1153-1155)GGG>GGA	p.G385G	OIT3_uc009xqs.1_Intron	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	385	ZP.					nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					GAAATCATGGGATCTTCCCAT	0.512													6	72					0	0	0.00116845	0	0
USP54	159195	broad.mit.edu	37	10	75276290	75276290	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:75276290C>T	uc001juo.2	-	18	3911	c.3894G>A	c.(3892-3894)GAG>GAA	p.E1298E	USP54_uc010qkk.1_Silent_p.E480E|USP54_uc001juk.2_Silent_p.E386E|USP54_uc001jul.2_Silent_p.E386E|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1298					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					TGTGATTTCTCTCTGGATAGG	0.478													8	80					0	0	0.000442599	0	0
SEC24C	9632	broad.mit.edu	37	10	75519813	75519813	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:75519813C>T	uc001juw.2	+	6	698	c.519C>T	c.(517-519)TTC>TTT	p.F173F	SEC24C_uc010qkn.1_RNA|SEC24C_uc009xrj.1_Silent_p.F31F|SEC24C_uc001jux.2_Silent_p.F173F|SEC24C_uc010qko.1_Silent_p.F31F|SEC24C_uc010qkp.1_Intron|SEC24C_uc010qkq.1_Intron	NM_004922	NP_004913	P53992	SC24C_HUMAN	SEC24-related protein C	173					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|zinc ion binding			skin(2)|central_nervous_system(1)	3	Prostate(51;0.0112)					CAGGAAGTTTCCCTAACTCTG	0.552													6	97					0	0	0.00198382	0	0
KCNMA1	3778	broad.mit.edu	37	10	78649263	78649263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:78649263C>T	uc001jxn.2	-	27	3584	c.3407G>A	c.(3406-3408)GGA>GAA	p.G1136E	KCNMA1_uc001jxj.2_Missense_Mutation_p.G1082E|KCNMA1_uc001jxk.1_Missense_Mutation_p.G754E|KCNMA1_uc009xrt.1_Missense_Mutation_p.G927E|KCNMA1_uc001jxl.1_Missense_Mutation_p.G761E|KCNMA1_uc001jxo.2_Missense_Mutation_p.G1119E|KCNMA1_uc001jxm.2_Missense_Mutation_p.G1078E|KCNMA1_uc001jxq.2_Missense_Mutation_p.G1108E|uc001jxp.2_Intron	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1136	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	CCGGTAAATTCCAAAACAAAG	0.443													6	45					0	0	0.00198382	0	0
DLG5	9231	broad.mit.edu	37	10	79565592	79565592	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:79565592G>A	uc001jzk.2	-	27	5065	c.4995C>T	c.(4993-4995)CTC>CTT	p.L1665L	DLG5_uc001jzi.2_Silent_p.L420L|DLG5_uc001jzj.2_Silent_p.L1080L|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1665					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			CAGACATGCTGAGCCTCCTGG	0.582													6	73					0	0	0.00116845	0	0
DLG5	9231	broad.mit.edu	37	10	79566529	79566529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:79566529G>A	uc001jzk.2	-	26	5024	c.4954C>T	c.(4954-4956)CCC>TCC	p.P1652S	DLG5_uc001jzi.2_Missense_Mutation_p.P407S|DLG5_uc001jzj.2_Missense_Mutation_p.P1067S|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1652	SH3.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TATTTGCTGGGAATCTGCCCG	0.642													7	54					0	0	0.000442599	0	0
DLG5	9231	broad.mit.edu	37	10	79576792	79576792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:79576792G>A	uc001jzk.2	-	19	3917	c.3847C>T	c.(3847-3849)CCG>TCG	p.P1283S	DLG5_uc001jzi.2_Missense_Mutation_p.P38S|DLG5_uc001jzj.2_Missense_Mutation_p.P698S|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.P887S	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1283					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			ACACTCCGCGGATATCTTGGT	0.507													7	92					0	0	0.000157383	0	0
POLR3A	11128	broad.mit.edu	37	10	79767571	79767572	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:79767571_79767572GG>AA	uc001jzn.2	-	15	2056_2057	c.1962_1963CC>TT	c.(1960-1965)ACCCTA>ACTTTA	p.654_655TL>TL		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	654_655					innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			CCTGACCCTAGGGTTCCTTTGT	0.416													10	92					0	0	6.4e-05	0	0
NRG3	10718	broad.mit.edu	37	10	84118519	84118519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:84118519G>A	uc001kco.2	+	2	875	c.848G>A	c.(847-849)CGA>CAA	p.R283Q	NRG3_uc010qlz.1_Missense_Mutation_p.R283Q|NRG3_uc001kcp.2_Missense_Mutation_p.R62Q|NRG3_uc001kcq.2_5'UTR	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	283	Ser/Thr-rich.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		TCCACAGAGCGATCCGAGCAC	0.517													10	75					0	0	0.000673444	0	0
LRIT2	340745	broad.mit.edu	37	10	85981738	85981738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:85981738C>T	uc001kcy.2	-	3	1599	c.1591G>A	c.(1591-1593)GGT>AGT	p.G531S	LRIT2_uc010qmc.1_Missense_Mutation_p.G541S	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	531						integral to membrane				ovary(2)	2						TGCCCTTCACCGTCATCACAG	0.587													7	91					0	0	0.000673444	0	0
LRIT2	340745	broad.mit.edu	37	10	85984762	85984762	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:85984762C>T	uc001kcy.2	-	2	227	c.219G>A	c.(217-219)GGG>GGA	p.G73G	LRIT2_uc010qmc.1_Silent_p.G73G	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	73						integral to membrane				ovary(2)	2						TGATGAAAGACCCTTGGGGCA	0.463													12	73					0	0	0.00136819	0	0
OPN4	94233	broad.mit.edu	37	10	88418312	88418312	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:88418312C>T	uc001kdq.2	+	4	723	c.496C>T	c.(496-498)CTG>TTG	p.L166L	OPN4_uc001kdp.2_Silent_p.L177L|OPN4_uc010qmk.1_Silent_p.L177L|OPN4_uc009xsx.1_5'Flank	NM_033282	NP_150598	Q9UHM6	OPN4_HUMAN	opsin 4 isoform 1	166	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|regulation of circadian rhythm|rhythmic process|visual perception	integral to membrane|plasma membrane	11-cis retinal binding|G-protein coupled photoreceptor activity			ovary(1)	1						GGCCATCGCCCTGGACCGCTA	0.607													4	37					0	0	0.00024832	0	0
LIPK	643414	broad.mit.edu	37	10	90486639	90486639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:90486639C>T	uc010qmv.1	+	2	193	c.193C>T	c.(193-195)CCA>TCA	p.P65S		NM_001080518	NP_001073987	Q5VXJ0	LIPK_HUMAN	lipase, family member K precursor	65					lipid catabolic process	extracellular region	hydrolase activity			ovary(2)	2		Colorectal(252;0.0381)		Colorectal(12;7.03e-05)|COAD - Colon adenocarcinoma(12;8.33e-05)		TTATAGGATTCCACATGGAAG	0.363													4	22					0	0	0.00024832	0	0
KIF11	3832	broad.mit.edu	37	10	94405214	94405214	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:94405214C>A	uc001kic.2	+	18	2670	c.2362C>A	c.(2362-2364)CAA>AAA	p.Q788K	KIF11_uc010qnq.1_Intron	NM_004523	NP_004514	P52732	KIF11_HUMAN	kinesin family member 11	788					blood coagulation|cell division|microtubule-based movement|spindle assembly involved in mitosis	chromatin remodeling complex|cytosol|kinesin complex|microtubule|spindle pole	ATP binding|microtubule motor activity|protein kinase binding			skin(1)	1						AAATTTTAACCAAGAAGGTAC	0.348													11	421					0.00185496	0.0073679	0.00185496	1	0
TMEM20	159371	broad.mit.edu	37	10	95660969	95660969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:95660969G>A	uc001kjg.1	+	3	881	c.820G>A	c.(820-822)GGA>AGA	p.G274R	TMEM20_uc001kji.2_Intron|TMEM20_uc001kjf.1_Missense_Mutation_p.G273R|TMEM20_uc001kjh.2_Intron|TMEM20_uc010qnw.1_Missense_Mutation_p.G257R|TMEM20_uc001kjj.2_Intron	NM_001134658	NP_001128130	Q2M3R5	TMM20_HUMAN	transmembrane protein 20 isoform 1	274	DUF6 2.					integral to membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;3.46e-05)|Renal(717;0.018)|Ovarian(717;0.0228)|all_hematologic(284;0.189)		STAD - Stomach adenocarcinoma(243;0.00345)		CTCTGTATTAGGAGAGTGGAG	0.413													4	37					0	0	0.00024832	0	0
PLCE1	51196	broad.mit.edu	37	10	96030337	96030337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:96030337G>A	uc001kjk.2	+	18	5118	c.4484G>A	c.(4483-4485)CGA>CAA	p.R1495Q	PLCE1_uc010qnx.1_Missense_Mutation_p.R1479Q|PLCE1_uc001kjm.2_Missense_Mutation_p.R1187Q	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1495	PI-PLC X-box.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CCTCAGCAACGAAAAATGGCA	0.403													10	90					0	0	0.000978159	0	0
PLCE1	51196	broad.mit.edu	37	10	96073091	96073091	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:96073091C>T	uc001kjk.2	+	28	6718	c.6084C>T	c.(6082-6084)ACC>ACT	p.T2028T	PLCE1_uc010qnx.1_Silent_p.T2012T|PLCE1_uc001kjm.2_Silent_p.T1720T|PLCE1_uc001kjp.2_Silent_p.T386T	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	2028	Ras-associating 1.				activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AGCCCTTTACCGTTTTCACTA	0.463													10	96					0	0	0.00136819	0	0
CYP2C19	1557	broad.mit.edu	37	10	96612496	96612496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:96612496G>A	uc010qnz.1	+	9	1298	c.1298G>A	c.(1297-1299)CGG>CAG	p.R433Q	CYP2C19_uc010qny.1_Missense_Mutation_p.R411Q	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	433					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	TCAGGAAAACGGATTTGTGTG	0.428													6	50					0	0	0.000274275	0	0
CYP2C8	1558	broad.mit.edu	37	10	96827096	96827096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:96827096C>T	uc001kkb.2	-	3	445	c.350G>A	c.(349-351)GGA>GAA	p.G117E	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.G47E|CYP2C8_uc010qob.1_Missense_Mutation_p.G31E|CYP2C8_uc010qoc.1_Missense_Mutation_p.G15E|CYP2C8_uc010qod.1_Missense_Mutation_p.G31E	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	117					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CCATCTCTTTCCATTGCTGGA	0.488													5	32					0	0	0.000602214	0	0
TLL2	7093	broad.mit.edu	37	10	98136459	98136459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:98136459C>T	uc001kml.1	-	18	2664	c.2438G>A	c.(2437-2439)AGA>AAA	p.R813K		NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	813	CUB 4.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		GAGTTTCACTCTGTGGCCTGC	0.363													6	56					0	0	0.00198382	0	0
C10orf28	27291	broad.mit.edu	37	10	99968076	99968076	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:99968076C>T	uc001kow.3	+	4	500	c.205C>T	c.(205-207)CGA>TGA	p.R69*	C10orf28_uc001kox.3_Nonsense_Mutation_p.R69*|C10orf28_uc001koy.3_Nonsense_Mutation_p.R69*|C10orf28_uc009xvx.2_Nonsense_Mutation_p.R69*|C10orf28_uc009xvy.2_Intron|C10orf28_uc001koz.3_Intron	NM_014472	NP_055287	Q4KMY3	Q4KMY3_HUMAN	growth inhibition and differentiation related	69							nucleotide binding			large_intestine(1)|skin(1)	2		Colorectal(252;0.234)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)		ACCGGAGGCTCGAAGACTAAA	0.353													11	106					0	0	0.00185496	0	0
PYROXD2	84795	broad.mit.edu	37	10	100143598	100143598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:100143598C>T	uc001kpc.2	-	16	1789	c.1703G>A	c.(1702-1704)CGA>CAA	p.R568Q	PYROXD2_uc001kpb.2_RNA|PYROXD2_uc001kpd.2_RNA	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	568							oxidoreductase activity			central_nervous_system(1)	1						TGCTGCATTTCGCCCAGCAGC	0.567													10	86					0	0	0.00136819	0	0
MGEA5	10724	broad.mit.edu	37	10	103557835	103557835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:103557835G>A	uc001ktv.2	-	10	2329	c.1886C>T	c.(1885-1887)TCC>TTC	p.S629F	MGEA5_uc001ktu.2_RNA|MGEA5_uc010qqe.1_Missense_Mutation_p.S576F|MGEA5_uc009xws.2_Missense_Mutation_p.S576F|MGEA5_uc001ktw.2_Missense_Mutation_p.S629F	NM_012215	NP_036347	O60502	NCOAT_HUMAN	meningioma expressed antigen 5 (hyaluronidase)	629	Histone acetyltransferase activity (By similarity).				glycoprotein catabolic process	cytoplasm|nucleus	histone acetyltransferase activity|hyalurononglucosaminidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.207)		Epithelial(162;4.67e-09)|all cancers(201;2.54e-07)		GGCACAATTGGAGAGCCGAGT	0.403													5	67					0	0	0.00116845	0	0
PPRC1	23082	broad.mit.edu	37	10	103901671	103901671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:103901671C>T	uc001kum.2	+	5	3445	c.3406C>T	c.(3406-3408)CAC>TAC	p.H1136Y	PPRC1_uc001kun.2_Missense_Mutation_p.H1016Y|PPRC1_uc010qqj.1_Missense_Mutation_p.H1136Y|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1136	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GCCTGCTGTCCACCCAGCCCG	0.582													4	26					0	0	0.00024832	0	0
GBF1	8729	broad.mit.edu	37	10	104140106	104140106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:104140106C>T	uc001kux.1	+	37	5216	c.4976C>T	c.(4975-4977)TCC>TTC	p.S1659F	GBF1_uc001kuy.1_Missense_Mutation_p.S1655F|GBF1_uc001kuz.1_Missense_Mutation_p.S1656F	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1659					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CACGCAGGCTCCAGCGACTTA	0.562													9	71					0	0	0.000978159	0	0
COL17A1	1308	broad.mit.edu	37	10	105815633	105815633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:105815633C>T	uc001kxr.2	-	18	1763	c.1594G>A	c.(1594-1596)GGA>AGA	p.G532R	COL17A1_uc010qqv.1_Missense_Mutation_p.G516R	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	532	Extracellular (Potential).|Nonhelical region (NC16).				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		AGGTCTGCTCCCGCCGCGGGT	0.552													10	55					0	0	0.000673444	0	0
ACSL5	51703	broad.mit.edu	37	10	114176675	114176675	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:114176675G>A	uc001kzs.2	+	13	1254	c.1113G>A	c.(1111-1113)AAG>AAA	p.K371K	ACSL5_uc001kzt.2_Silent_p.K371K|ACSL5_uc001kzu.2_Silent_p.K427K|ACSL5_uc009xxz.2_Silent_p.K371K|ACSL5_uc010qrj.1_Silent_p.K153K	NM_203379	NP_976313	Q9ULC5	ACSL5_HUMAN	acyl-CoA synthetase long-chain family member 5	371	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(2)|skin(1)	3		Colorectal(252;0.117)|Breast(234;0.222)		Epithelial(162;0.0343)|all cancers(201;0.137)		CACCCTTGAAGAAGTTCTTGT	0.413													7	82					0	0	0.000157383	0	0
NRAP	4892	broad.mit.edu	37	10	115413812	115413812	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:115413812T>C	uc001laj.2	-	5	597	c.433A>G	c.(433-435)AGG>GGG	p.R145G	NRAP_uc001lak.2_Missense_Mutation_p.R145G|NRAP_uc001lal.3_Missense_Mutation_p.R145G	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	145						fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		TCAACCATCCTTACAATTTCG	0.458													21	164					0	0	0.000878237	0	0
TDRD1	56165	broad.mit.edu	37	10	115963905	115963905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:115963905G>A	uc001lbg.1	+	9	1208	c.1055G>A	c.(1054-1056)GGA>GAA	p.G352E	TDRD1_uc001lbf.2_Missense_Mutation_p.G343E|TDRD1_uc001lbh.1_Missense_Mutation_p.G343E|TDRD1_uc001lbi.1_Missense_Mutation_p.G343E|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.G61E	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	352	Tudor 1.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		ATTGATTATGGAAATGAAGAA	0.338													10	74					0	0	0.000978159	0	0
FAM160B1	57700	broad.mit.edu	37	10	116595897	116595897	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:116595897C>T	uc001lcb.2	+	5	749	c.414C>T	c.(412-414)CTC>CTT	p.L138L	FAM160B1_uc001lcc.2_Silent_p.L138L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	138										lung(1)	1						TAATTAGACTCTGTGGTGAAG	0.328													25	218					0	0	0.00127121	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118357582	118357582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:118357582G>A	uc001lco.1	+	8	736	c.718G>A	c.(718-720)GGT>AGT	p.G240S	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.G240S	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	240					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		CCAACAGATGGGTCATCTTGA	0.468													7	50					0	0	0.00198382	0	0
KCNK18	338567	broad.mit.edu	37	10	118969155	118969155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:118969155G>A	uc010qsr.1	+	3	500	c.500G>A	c.(499-501)CGA>CAA	p.R167Q		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	167	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		AATCGGTTCCGAAAATTCCCT	0.507													7	98					0	0	0.000157383	0	0
FAM45A	404636	broad.mit.edu	37	10	120879962	120879962	+	Silent	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:120879962C>G	uc001ldw.2	+	5	635	c.591C>G	c.(589-591)ACC>ACG	p.T197T	FAM45A_uc010qsv.1_Silent_p.T189T|FAM45A_uc010qsw.1_Silent_p.T46T|FAM45A_uc010qsx.1_Intron|FAM45A_uc010qsy.1_Silent_p.T124T|FAM45A_uc010qsz.1_Silent_p.T86T	NM_207009	NP_996892	Q8TCE6	FA45A_HUMAN	hypothetical protein LOC404636	197										ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0293)		AGGAGTTCACCAGGTATCACC	0.413													3	44					0	0	6.4e-05	0	0
FAM175B	23172	broad.mit.edu	37	10	126523103	126523103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:126523103C>T	uc001lib.3	+	9	856	c.811C>T	c.(811-813)CCG>TCG	p.P271S		NM_032182	NP_115558	Q15018	F175B_HUMAN	hypothetical protein LOC23172	271						BRISC complex	polyubiquitin binding				0						CAGACAGATGCCGTCTGAAAG	0.478													6	43					0	0	0.00116845	0	0
GPR123	84435	broad.mit.edu	37	10	134912202	134912202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr10:134912202G>A	uc001llx.3	+	4	626	c.190G>A	c.(190-192)GCC>ACC	p.A64T	GPR123_uc001llw.2_Missense_Mutation_p.A784T	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	64	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CTTCCACGCGGCCCTGACCTT	0.647													8	54					0	0	0.000157383	0	0
NLRP6	171389	broad.mit.edu	37	11	282771	282771	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:282771C>T	uc010qvs.1	+	5	2175	c.2175C>T	c.(2173-2175)GAC>GAT	p.D725D	NLRP6_uc010qvt.1_Silent_p.D724D	NM_138329	NP_612202	P59044	NALP6_HUMAN	NLR family, pyrin domain containing 6	725						cytoplasm	ATP binding			upper_aerodigestive_tract(1)|skin(1)	2		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.28e-28)|Epithelial(43;2.47e-27)|OV - Ovarian serous cystadenocarcinoma(40;4.66e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.0485)|LUSC - Lung squamous cell carcinoma(625;0.122)		CAATGACTGACCCACTGTGCC	0.587													10	69					0	0	0.000673444	0	0
LRDD	55367	broad.mit.edu	37	11	802336	802336	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:802336G>T	uc001lro.1	-	6	1177	c.1035C>A	c.(1033-1035)TTC>TTA	p.F345L	LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Missense_Mutation_p.F345L|LRDD_uc001lrl.1_Missense_Mutation_p.F199L|LRDD_uc001lrm.1_Missense_Mutation_p.F32L|LRDD_uc001lrn.1_Missense_Mutation_p.F199L|LRDD_uc001lrp.1_5'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	345	ZU5 1.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTCCCGCTGGGAACTGCAGGC	0.662													12	58					4.36969e-10	1.75917e-09	0.00185496	1	0
MUC6	4588	broad.mit.edu	37	11	1017526	1017526	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:1017526G>C	uc001lsw.2	-	31	5326	c.5275C>G	c.(5275-5277)CCT>GCT	p.P1759A		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1759	Thr-rich.|Approximate repeats.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GTGACTTCAGGATGGTGTGTG	0.562													8	514					0	0	0.000442599	0	0
KRTAP5-1	387264	broad.mit.edu	37	11	1606189	1606189	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:1606189C>T	uc001ltu.1	-	1	325	c.291G>A	c.(289-291)GGG>GGA	p.G97G	LOC338651_uc009ycx.1_Intron|LOC338651_uc001ltt.1_Intron	NM_001005922	NP_001005922	Q6L8H4	KRA51_HUMAN	keratin associated protein 5-1	97	8 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AGCCACAACCCCCCTTGGATC	0.677													6	32					0	0	0.000442599	0	0
LOC338651	338651	broad.mit.edu	37	11	1619548	1619548	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:1619548C>T	uc009ycx.1	+	2	1399	c.648C>T	c.(646-648)TCC>TCT	p.S216S	LOC338651_uc001ltt.1_RNA|KRTAP5-2_uc001ltv.2_5'Flank	NR_021489				SubName: Full=cDNA FLJ30579 fis, clone BRAWH2006989, weakly similar to DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT;          EC=2.7.7.6;												0						TGTGGAGCTCCCTGAGCCTGG	0.532													12	76					0	0	0.000308642	0	0
TH	7054	broad.mit.edu	37	11	2190958	2190958	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:2190958C>T	uc001lvq.2	-	3	346	c.327G>A	c.(325-327)GGG>GGA	p.G109G	TH_uc001lvp.2_Silent_p.G105G|TH_uc001lvr.2_Silent_p.G78G|TH_uc010qxj.1_Silent_p.G82G|TH_uc001lvs.2_Silent_p.G78G|TH_uc001lvt.2_Silent_p.G82G|TH_uc009ydh.1_5'Flank	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	109					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	GCACGGCCTTCCCCTCCTTCT	0.692													4	35					0	0	0.000602214	0	0
CARS	833	broad.mit.edu	37	11	3028115	3028116	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:3028115_3028116GG>AA	uc001lxh.2	-	18	1967_1968	c.1893_1894CC>TT	c.(1891-1896)GACCAC>GATTAC	p.H632Y	CARS_uc009ydu.2_RNA|CARS_uc001lxe.2_Missense_Mutation_p.H622Y|CARS_uc001lxf.2_Missense_Mutation_p.H715Y|CARS_uc001lxg.2_Missense_Mutation_p.H632Y|CARS_uc010qxo.1_Missense_Mutation_p.H715Y|CARS_uc010qxp.1_Missense_Mutation_p.H645Y	NM_001751	NP_001742	P49589	SYCC_HUMAN	cysteinyl-tRNA synthetase isoform b	632					cysteinyl-tRNA aminoacylation	cytoplasm|cytosol	ATP binding|cysteine-tRNA ligase activity|metal ion binding|protein homodimerization activity|protein homodimerization activity|tRNA binding|tRNA binding		CARS/ALK(5)	soft_tissue(5)|ovary(2)	7		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00317)|LUSC - Lung squamous cell carcinoma(625;0.218)	L-Cysteine(DB00151)	CCACCTTCGTGGTCTTCAAACC	0.589			T	ALK	ALCL								19	107					0	0	6.4e-05	0	0
NUP98	4928	broad.mit.edu	37	11	3797170	3797170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:3797170G>A	uc001lyh.2	-	5	728	c.437C>T	c.(436-438)TCC>TTC	p.S146F	NUP98_uc001lyi.2_Missense_Mutation_p.S146F|NUP98_uc001lyj.1_Missense_Mutation_p.S146F|NUP98_uc001lyk.1_Missense_Mutation_p.S146F|NUP98_uc010qxv.1_Missense_Mutation_p.S109F	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	146	Gly/Thr-rich.				carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		CCCAAAGAGGGAGCCAGATGT	0.398			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								17	157					0	0	0.00121646	0	0
STIM1	6786	broad.mit.edu	37	11	4103438	4103438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:4103438G>A	uc001lyv.2	+	8	1562	c.994G>A	c.(994-996)GAG>AAG	p.E332K	STIM1_uc009yef.2_Missense_Mutation_p.E332K|STIM1_uc009yeg.2_Missense_Mutation_p.E159K	NM_003156	NP_003147	Q13586	STIM1_HUMAN	stromal interaction molecule 1 precursor	332	Cytoplasmic (Potential).|Glu-rich.|Potential.				activation of store-operated calcium channel activity|calcium ion transport|detection of calcium ion|platelet activation	integral to endoplasmic reticulum membrane|integral to plasma membrane|microtubule	calcium ion binding|microtubule plus-end binding			pancreas(1)	1		Breast(177;0.00159)|Medulloblastoma(188;0.00258)|all_neural(188;0.0233)		BRCA - Breast invasive adenocarcinoma(625;0.114)|LUSC - Lung squamous cell carcinoma(625;0.141)		GAGGAAAGCAGAGAAGGAGCT	0.478													10	69					0	0	0.000673444	0	0
OR51E1	143503	broad.mit.edu	37	11	4674360	4674360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:4674360G>A	uc001lzi.3	+	2	748	c.604G>A	c.(604-606)GGC>AGC	p.G202S		NM_152430	NP_689643	Q8TCB6	O51E1_HUMAN	olfactory receptor, family 51, subfamily E,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(3)|pancreas(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;7.37e-14)|GBM - Glioblastoma multiforme(2;2.85e-05)|BRCA - Breast invasive adenocarcinoma(625;0.00222)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGTCGTCTATGGCCTTATCGT	0.498													13	103					0	0	0.00244969	0	0
OR52R1	119695	broad.mit.edu	37	11	4824701	4824701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:4824701C>T	uc010qym.1	-	1	1147	c.1147G>A	c.(1147-1149)GAC>AAC	p.D383N		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATAACCCTGTCCCCGATCTGT	0.468													11	41					0	0	0.000673444	0	0
OR51T1	401665	broad.mit.edu	37	11	4903161	4903161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:4903161C>T	uc010qyp.1	+	1	113	c.113C>T	c.(112-114)TCC>TTC	p.S38F		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACTTCGTCTTCCTCAAACTTC	0.413													6	51					0	0	0.00116845	0	0
OR51A7	119687	broad.mit.edu	37	11	4929499	4929499	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:4929499G>A	uc010qyq.1	+	1	900	c.900G>A	c.(898-900)GAG>GAA	p.E300E		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		AAATCTGGGAGAAGATCTTGG	0.398													12	52					0	0	0.00185496	0	0
OR51A4	401666	broad.mit.edu	37	11	4967879	4967879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:4967879G>A	uc010qys.1	-	1	452	c.452C>T	c.(451-453)TCC>TTC	p.S151F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTCTTAAAGGAGAATACTAT	0.423													11	99					0	0	0.000958276	0	0
OR52A1	23538	broad.mit.edu	37	11	5173466	5173466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5173466G>A	uc010qyy.1	-	1	134	c.134C>T	c.(133-135)TCC>TTC	p.S45F		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGAAGCAAGGAATTTCCAAT	0.468													7	51					0	0	0.000157383	0	0
OR51V1	283111	broad.mit.edu	37	11	5221210	5221210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5221210C>T	uc010qyz.1	-	1	721	c.721G>A	c.(721-723)GAA>AAA	p.E241K		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	241	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCTCTCTTCCTGAGAGGCA	0.453													6	63					0	0	0.00116845	0	0
HBG1	3047	broad.mit.edu	37	11	5270612	5270612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5270612G>A	uc001mah.1	-	2	354	c.301C>T	c.(301-303)CCT>TCT	p.P101S	HBG2_uc001mai.1_Intron	NM_000559	NP_000550	P69891	HBG1_HUMAN	A-gamma globin	101					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity|protein binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAGTTCTCAGGATCCACATGC	0.522													8	13					0	0	0.00136819	0	0
OR51M1	390059	broad.mit.edu	37	11	5410856	5410856	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5410856C>T	uc010qzc.1	+	1	228	c.228C>T	c.(226-228)TCC>TCT	p.S76S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	76						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCTACTATCCTTGCTGGCCC	0.468													10	69					0	0	0.00136819	0	0
OR51Q1	390061	broad.mit.edu	37	11	5443627	5443628	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5443627_5443628CC>TT	uc010qzd.1	+	1	197_198	c.197_198CC>TT	c.(196-198)TCC>TTT	p.S66F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	66	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGTTTCTCTCCATGCTGGCCC	0.545													16	60					0	0	6.4e-05	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530011	5530011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5530011C>T	uc001may.1	-	2	864	c.778G>A	c.(778-780)GAT>AAT	p.D260N	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	260										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCATAATATCTGTGTACATA	0.527													17	83					0	0	0.000566183	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5626584	5626584	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5626584G>A	uc001mbf.2	+	4	865	c.621G>A	c.(619-621)GAG>GAA	p.E207E	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Silent_p.E153E|TRIM6_uc010qzj.1_Silent_p.E4E|TRIM6_uc001mbc.1_Silent_p.E179E|TRIM6_uc001mbe.2_Silent_p.E4E|TRIM6_uc010qzk.1_Silent_p.E4E|TRIM6_uc010qzl.1_Silent_p.E4E|TRIM6_uc001mbd.2_Silent_p.E207E|TRIM6_uc001mbg.1_Silent_p.E4E|TRIM6_uc009yep.1_Silent_p.E4E	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	207						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		TGGAGCCTGAGAGATGCAGGA	0.502											OREG0003723	type=REGULATORY REGION|Gene=TRIM6|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	22	86					0	0	0.000720815	0	0
TRIM6	117854	broad.mit.edu	37	11	5632083	5632084	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5632083_5632084GG>AA	uc001mbc.1	+	8	1110_1111	c.978_979GG>AA	c.(976-981)GTGGGA>GTAAGA	p.G327R	HBG2_uc001mak.1_Intron|TRIM6-TRIM34_uc001mbf.2_Intron|TRIM6_uc009yeo.1_Missense_Mutation_p.G301R|TRIM6_uc010qzj.1_Missense_Mutation_p.G152R|TRIM6_uc001mbe.2_Missense_Mutation_p.G152R|TRIM6_uc010qzk.1_Missense_Mutation_p.G152R|TRIM6_uc010qzl.1_Missense_Mutation_p.G152R|TRIM6_uc001mbd.2_Missense_Mutation_p.G355R|TRIM6_uc001mbg.1_Missense_Mutation_p.G152R|TRIM6_uc009yep.1_3'UTR	NM_058166	NP_477514	Q9C030	TRIM6_HUMAN	tripartite motif-containing 6 isoform 2	327	B30.2/SPRY.				protein trimerization	cytoplasm	zinc ion binding				0		Lung NSC(207;2.23e-07)|all_lung(207;1.81e-06)|Medulloblastoma(188;0.00225)|Breast(177;0.0101)|all_neural(188;0.0212)		Epithelial(150;1.12e-45)|BRCA - Breast invasive adenocarcinoma(625;0.00101)|LUSC - Lung squamous cell carcinoma(625;0.192)		TGAGGTTTGTGGGAGCTAAAGT	0.465													12	47					0	0	6.4e-05	0	0
TRIM6	117854	broad.mit.edu	37	11	5632314	5632314	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5632314G>A	uc001mbc.1	+	8	1341	c.1209G>A	c.(1207-1209)GTG>GTA	p.V403V	HBG2_uc001mak.1_Intron|TRIM6-TRIM34_uc001mbf.2_Intron|TRIM6_uc009yeo.1_Silent_p.V377V|TRIM6_uc010qzj.1_Silent_p.V228V|TRIM6_uc001mbe.2_Silent_p.V228V|TRIM6_uc010qzk.1_Silent_p.V228V|TRIM6_uc010qzl.1_Silent_p.V228V|TRIM6_uc001mbd.2_Silent_p.V431V|TRIM6_uc001mbg.1_Silent_p.V228V|TRIM6_uc009yep.1_3'UTR	NM_058166	NP_477514	Q9C030	TRIM6_HUMAN	tripartite motif-containing 6 isoform 2	403	B30.2/SPRY.				protein trimerization	cytoplasm	zinc ion binding				0		Lung NSC(207;2.23e-07)|all_lung(207;1.81e-06)|Medulloblastoma(188;0.00225)|Breast(177;0.0101)|all_neural(188;0.0212)		Epithelial(150;1.12e-45)|BRCA - Breast invasive adenocarcinoma(625;0.00101)|LUSC - Lung squamous cell carcinoma(625;0.192)		GATACTGGGTGATTGGGTTAC	0.488													7	61					0	0	0.000157383	0	0
OR52N5	390075	broad.mit.edu	37	11	5799749	5799749	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5799749A>T	uc010qzn.1	-	1	116	c.116T>A	c.(115-117)CTC>CAC	p.L39H	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		CATTGTGCAGAGTGGGAGGGA	0.398													7	83					0	0	0.000274275	0	0
OR52N2	390077	broad.mit.edu	37	11	5841866	5841866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5841866G>A	uc010qzp.1	+	1	301	c.301G>A	c.(301-303)GCC>ACC	p.A101T	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	101	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CGCCTGCCTGGCCCAGATGTT	0.517													8	68					0	0	0.000442599	0	0
OR56A3	390083	broad.mit.edu	37	11	5969256	5969256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:5969256G>A	uc010qzt.1	+	1	680	c.680G>A	c.(679-681)CGA>CAA	p.R227Q		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTCATTCTGCGAGCTGTGCTG	0.517													18	124					0	0	0.00188189	0	0
CNGA4	1262	broad.mit.edu	37	11	6260704	6260704	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:6260704C>T	uc001mco.2	+	2	260	c.153C>T	c.(151-153)ATC>ATT	p.I51I	CNGA4_uc010raa.1_Silent_p.I11I|CNGA4_uc001mcn.2_Silent_p.I11I	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	51	Helical; Name=H1; (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCTCATCATCCTCGTGTGCA	0.532													19	113					0	0	0.000958276	0	0
DCHS1	8642	broad.mit.edu	37	11	6654234	6654234	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:6654234A>G	uc001mem.1	-	6	2919	c.2509T>C	c.(2509-2511)TTC>CTC	p.F837L		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	837	Cadherin 8.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTAGGGAGAAGAGTCCTCGG	0.577													3	43					0	0	0.00024832	0	0
OR6A2	8590	broad.mit.edu	37	11	6816382	6816382	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:6816382G>A	uc001mes.1	-	1	758	c.558C>T	c.(556-558)GTC>GTT	p.V186V		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCAATGGAGAGACATCACAGA	0.458													8	84					0	0	0.000442599	0	0
OR10A5	144124	broad.mit.edu	37	11	6867228	6867228	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:6867228C>T	uc001met.1	+	1	315	c.315C>T	c.(313-315)TTC>TTT	p.F105F		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGTATTTCTTCTTCTTCTTTG	0.517													16	69					0	0	0.00152264	0	0
OR10A2	341276	broad.mit.edu	37	11	6891510	6891510	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:6891510C>T	uc001meu.1	+	1	525	c.525C>T	c.(523-525)GTC>GTT	p.V175V		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		TGAGGCTGGTCTGTGCAGACA	0.507													6	107					0	0	0.000157383	0	0
OR10A2	341276	broad.mit.edu	37	11	6891635	6891635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:6891635C>T	uc001meu.1	+	1	650	c.650C>T	c.(649-651)TCA>TTA	p.S217L		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	217	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		AAGATCCCATCAGCTAAAGGG	0.453													14	171					0	0	0.00121646	0	0
OR10A4	283297	broad.mit.edu	37	11	6897954	6897954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:6897954G>A	uc010rat.1	+	1	76	c.76G>A	c.(76-78)GCT>ACT	p.A26T		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	26	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TGAGCTTCAGGCTCTACTGTT	0.463													20	118					0	0	0.00188189	0	0
NLRP14	338323	broad.mit.edu	37	11	7079013	7079013	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:7079013G>A	uc001mfb.1	+	7	2720	c.2397G>A	c.(2395-2397)TTG>TTA	p.L799L		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	799	LRR 3.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		ATAATCTGTTGGATGATGGAG	0.378													8	52					0	0	0.000274275	0	0
NLRP10	338322	broad.mit.edu	37	11	7981482	7981482	+	Silent	SNP	C	T	T	rs138475841		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:7981482C>T	uc001mfv.1	-	2	1694	c.1677G>A	c.(1675-1677)AGG>AGA	p.R559R		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	559							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AATCCCAGGTCCTGTTGTGCT	0.373													6	112					0	0	0.00116845	0	0
NLRP10	338322	broad.mit.edu	37	11	7981952	7981952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:7981952C>T	uc001mfv.1	-	2	1224	c.1207G>A	c.(1207-1209)GAG>AAG	p.E403K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	403	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CGGGAAAGCTCGGAGCAGCCC	0.537													8	27					0	0	0.000274275	0	0
NLRP10	338322	broad.mit.edu	37	11	7984790	7984790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:7984790C>T	uc001mfv.1	-	1	270	c.253G>A	c.(253-255)GAA>AAA	p.E85K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	85	DAPIN.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TCCACAAGTTCCAACAGGTTC	0.537													11	54					0	0	0.00136819	0	0
TUB	7275	broad.mit.edu	37	11	8111718	8111718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:8111718G>A	uc001mga.2	+	3	342	c.193G>A	c.(193-195)GAG>AAG	p.E65K	TUB_uc010rbk.1_Missense_Mutation_p.E71K|TUB_uc001mfy.2_Missense_Mutation_p.E120K	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	65					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		ccggcAGTCAGAGGAACAAGC	0.522													5	32					0	0	0.00198382	0	0
ZNF143	7702	broad.mit.edu	37	11	9537807	9537807	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:9537807G>A	uc001mhr.2	+	14	1702	c.1584G>A	c.(1582-1584)CAG>CAA	p.Q528Q	ZNF143_uc009yfu.2_Silent_p.Q527Q|ZNF143_uc010rby.1_Silent_p.Q497Q	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	528					regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		TGGTAACGCAGGATGGCACGC	0.498													6	37					0	0	0.00116845	0	0
AMPD3	272	broad.mit.edu	37	11	10514899	10514899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:10514899G>A	uc001mio.1	+	7	1278	c.943G>A	c.(943-945)GAC>AAC	p.D315N	AMPD3_uc010rbz.1_Missense_Mutation_p.D156N|AMPD3_uc001min.1_Missense_Mutation_p.D324N|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.D322N|AMPD3_uc009yfy.2_Missense_Mutation_p.D315N	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	315					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		GTTCCAGGTGGACACACACAT	0.572													15	109					0	0	0.00121646	0	0
EIF4G2	1982	broad.mit.edu	37	11	10825854	10825854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:10825854G>A	uc001mjc.2	-	6	880	c.463C>T	c.(463-465)CCA>TCA	p.P155S	EIF4G2_uc001mjb.2_5'UTR|EIF4G2_uc009ygf.2_5'UTR|EIF4G2_uc001mjd.2_Missense_Mutation_p.P155S|EIF4G2_uc001mjf.1_5'UTR|SNORD97_uc009yge.2_5'Flank	NM_001418	NP_001409	P78344	IF4G2_HUMAN	eukaryotic translation initiation factor 4	155	MIF4G.				cell cycle arrest|cell death|regulation of translational initiation|RNA metabolic process	eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			ovary(1)|central_nervous_system(1)	2				all cancers(16;2.8e-07)|Epithelial(150;4.18e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		TTCTGTCCTGGTTGACCCTCT	0.423													19	137					0	0	0.00188189	0	0
PARVA	55742	broad.mit.edu	37	11	12534871	12534871	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:12534871C>T	uc001mki.2	+	9	811	c.762C>T	c.(760-762)TTC>TTT	p.F254F	PARVA_uc010rck.1_Silent_p.F201F	NM_018222	NP_060692	Q9NVD7	PARVA_HUMAN	parvin, alpha	254					cell adhesion|cell junction assembly|cilium morphogenesis	actin cytoskeleton|cytosol|focal adhesion	actin binding			breast(3)	3				Epithelial(150;0.00624)		ACACCTTGTTCGACCATGCCC	0.537													9	128					0	0	0.000673444	0	0
COPB1	1315	broad.mit.edu	37	11	14502334	14502334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:14502334G>A	uc001mli.2	-	10	1490	c.1183C>T	c.(1183-1185)CCA>TCA	p.P395S	COPB1_uc001mlg.2_Missense_Mutation_p.P395S|COPB1_uc001mlh.2_Missense_Mutation_p.P395S	NM_016451	NP_057535	P53618	COPB_HUMAN	coatomer protein complex, subunit beta 1	395					COPI coating of Golgi vesicle|interspecies interaction between organisms|intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|ER-Golgi intermediate compartment|plasma membrane	protein binding|structural molecule activity			ovary(1)|central_nervous_system(1)	2						GCCATATCTGGAAATCGGACA	0.299													9	159					0	0	0.000978159	0	0
ABCC8	6833	broad.mit.edu	37	11	17418816	17418816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:17418816C>T	uc001mnc.2	-	32	4038	c.3912G>A	c.(3910-3912)ATG>ATA	p.M1304I		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1304	Cytoplasmic (By similarity).|ABC transmembrane type-1 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCTGGAGCTCCATGTCTGCCA	0.612													18	93					0	0	0.00229938	0	0
ABCC8	6833	broad.mit.edu	37	11	17485016	17485016	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:17485016A>T	uc001mnc.2	-	4	674	c.548T>A	c.(547-549)CTC>CAC	p.L183H	ABCC8_uc010rcy.1_Missense_Mutation_p.L183H	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	183	Helical; Name=5; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CTCCACGAGGAGCAGCATCCC	0.597													26	217					0	0	0.000586117	0	0
USH1C	10083	broad.mit.edu	37	11	17523528	17523528	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:17523528C>T	uc001mnf.2	-	16	1394	c.1285_splice	c.e16-1	p.D429_splice	USH1C_uc001mne.2_Splice_Site_p.D729_splice|USH1C_uc009yhb.2_Splice_Site_p.D410_splice|USH1C_uc001mng.2_Splice_Site|USH1C_uc001mnd.2_Splice_Site_p.D393_splice	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a						equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						TCCGGAAATCCTGGAAGCAAA	0.542													7	33					0	0	0.000274275	0	0
SAA4	6291	broad.mit.edu	37	11	18253192	18253192	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:18253192G>A	uc001mny.2	-	4	346	c.250C>T	c.(250-252)CAG>TAG	p.Q84*		NM_006512	NP_006503	P35542	SAA4_HUMAN	serum amyloid A4, constitutive precursor	84					acute-phase response	high-density lipoprotein particle					0						ATTAATCCCTGAAGATAGACC	0.493													6	29					0	0	0.000157383	0	0
TSG101	7251	broad.mit.edu	37	11	18503293	18503293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:18503293G>A	uc001mor.2	-	9	1093	c.967C>T	c.(967-969)CCC>TCC	p.P323S		NM_006292	NP_006283	Q99816	TS101_HUMAN	tumor susceptibility gene 101	323	SB.|PTAP motif.				cell division|cellular membrane organization|endosome transport|interspecies interaction between organisms|non-lytic virus budding|protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	early endosome|late endosome membrane|multivesicular body|nucleolus|plasma membrane	calcium-dependent protein binding|DNA binding|transcription corepressor activity|ubiquitin binding|ubiquitin protein ligase binding				0						TTGTATAAGGGAGCTGTGGGA	0.388													7	126					0	0	0.000157383	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955392	18955392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:18955392C>T	uc001mpg.2	-	1	1158	c.940G>A	c.(940-942)GAG>AAG	p.E314K		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	314	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CCCGACAGCTCCAGGATTTCC	0.557													6	96					0	0	0.000157383	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956033	18956034	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:18956033_18956034GG>AA	uc001mpg.2	-	1	516_517	c.298_299CC>TT	c.(298-300)CCT>TTT	p.P100F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	100	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						CATCATCACAGGATAGAGGATT	0.54													6	231					0	0	6.4e-05	0	0
MRGPRX2	117194	broad.mit.edu	37	11	19077900	19077900	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:19077900C>A	uc001mph.2	-	2	138	c.50G>T	c.(49-51)GGA>GTA	p.G17V		NM_054030	NP_473371	Q96LB1	MRGX2_HUMAN	MAS-related GPR, member X2	17	Extracellular (Potential).				sensory perception of pain|sleep	plasma membrane	G-protein coupled receptor activity|neuropeptide binding			ovary(1)	1						TTGGTCATTTCCATTCACTGT	0.522													30	164					1.07637e-12	4.33695e-12	0.000953801	1	0
BDNF	627	broad.mit.edu	37	11	27679529	27679529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:27679529C>T	uc010rdu.1	-	2	1434	c.583G>A	c.(583-585)GGC>AGC	p.G195S	BDNFOS_uc001mrm.2_Intron|BDNFOS_uc009yij.2_Intron|BDNFOS_uc009yik.2_Intron|BDNFOS_uc009yil.2_Intron|BDNFOS_uc001mrp.2_Intron|BDNFOS_uc009yim.2_Intron|BDNFOS_uc009yin.2_Intron|BDNFOS_uc009yio.2_Intron|BDNFOS_uc009yip.2_Intron|BDNFOS_uc001mrn.2_Intron|BDNFOS_uc009yiq.2_Intron|BDNFOS_uc001mro.2_Intron|BDNFOS_uc009yir.2_Intron|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_Intron|BDNFOS_uc009yiu.2_Intron|BDNFOS_uc009yiv.2_Intron|BDNFOS_uc009yiw.2_Intron|BDNFOS_uc009yix.2_Intron|BDNFOS_uc009yiy.2_Intron|BDNFOS_uc009yiz.2_Intron|BDNFOS_uc001mrq.3_Intron|BDNFOS_uc001mrr.3_Intron|BDNFOS_uc009yja.2_Intron|BDNFOS_uc009yjb.2_Intron|BDNF_uc010rdv.1_Missense_Mutation_p.G195S|BDNF_uc001mrt.2_Missense_Mutation_p.G210S|BDNF_uc010rdw.1_Missense_Mutation_p.G195S|BDNF_uc009yjd.2_Missense_Mutation_p.G195S|BDNF_uc001mru.2_Missense_Mutation_p.G195S|BDNF_uc010rdx.1_Missense_Mutation_p.G195S|BDNF_uc010rdy.1_Missense_Mutation_p.G195S|BDNF_uc009yjg.2_Missense_Mutation_p.G195S|BDNF_uc009yje.2_Missense_Mutation_p.G277S|BDNF_uc009yjf.2_Missense_Mutation_p.G224S|BDNF_uc001mrv.2_Missense_Mutation_p.G195S|BDNF_uc001mrw.3_Missense_Mutation_p.G195S|BDNF_uc001mrx.2_Missense_Mutation_p.G195S|BDNF_uc001mry.3_Missense_Mutation_p.G195S|BDNF_uc001mrz.3_Missense_Mutation_p.G195S|BDNF_uc001msa.2_Missense_Mutation_p.G203S	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	195						extracellular region	growth factor activity				0						CCCCTGCAGCCTTCTTTTGTG	0.507													12	128					0	0	0.00136819	0	0
Unknown	0	broad.mit.edu	37	11	30946900	30946900	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:30946900C>T	uc001mss.1	-	1		c.56G>A			uc009yjk.1_Missense_Mutation_p.G433R					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		ATTTCCTTCCCCTTTTCATTG	0.353													28	162					0	0	0.0024448	0	0
WT1	7490	broad.mit.edu	37	11	32439123	32439123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:32439123C>T	uc001mtn.1	-	4	1146	c.950G>A	c.(949-951)GGA>GAA	p.G317E	WT1_uc001mtl.1_Missense_Mutation_p.G105E|WT1_uc001mtm.1_Missense_Mutation_p.G105D|WT1_uc001mto.1_Missense_Mutation_p.G317E|WT1_uc001mtp.1_Missense_Mutation_p.G317D|WT1_uc001mtq.1_Missense_Mutation_p.G317D|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	249					adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding		EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			AAAACCTTACCCCTTTAAGGT	0.368			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				7	41					0	0	0.000157383	0	0
CCDC73	493860	broad.mit.edu	37	11	32632752	32632752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:32632752G>A	uc001mtv.2	-	17	3000	c.2956C>T	c.(2956-2958)CCC>TCC	p.P986S		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	986										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TCTCCCTTGGGATCTGGATGG	0.383													25	95					0	0	0.00278032	0	0
CCDC73	493860	broad.mit.edu	37	11	32635808	32635808	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:32635808G>A	uc001mtv.2	-	16	2100	c.2056C>T	c.(2056-2058)CTG>TTG	p.L686L		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	686										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					CAGACTTGCAGAAAATCTGAA	0.303													6	53					0	0	0.00116845	0	0
C11orf41	25758	broad.mit.edu	37	11	33565386	33565386	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:33565386C>T	uc001mup.3	+	1	1510	c.1386C>T	c.(1384-1386)TTC>TTT	p.F462F	C11orf41_uc001mun.1_Silent_p.F462F	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	462						integral to membrane				ovary(2)	2						CTCAGGATTTCAAAGATACTG	0.458											OREG0020868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	163					0	0	0.000673444	0	0
LMO2	4005	broad.mit.edu	37	11	33886175	33886175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:33886175C>T	uc001mve.2	-	2	669	c.230G>A	c.(229-231)CGG>CAG	p.R77Q	LMO2_uc001mvc.2_Missense_Mutation_p.R70Q|LMO2_uc001mvd.2_Missense_Mutation_p.R70Q|LMO2_uc010rel.1_Missense_Mutation_p.R77Q|LMO2_uc010rem.1_Missense_Mutation_p.R146Q	NM_001142316	NP_001135788	P25791	RBTN2_HUMAN	LIM domain only 2 isoform 2	77	LIM zinc-binding 1.				multicellular organismal development	nucleus	protein binding|zinc ion binding			lung(1)	1						GCAGAGCTTCCGGCCCAGTTT	0.652			T	TRD@	T-ALL								7	33					0	0	0.000274275	0	0
ELF5	2001	broad.mit.edu	37	11	34502435	34502435	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:34502435C>T	uc001mvo.1	-	6	815	c.585G>A	c.(583-585)TGG>TGA	p.W195*	ELF5_uc001mvp.1_Nonsense_Mutation_p.W185*|ELF5_uc009ykd.1_Nonsense_Mutation_p.W90*	NM_198381	NP_938195	Q9UKW6	ELF5_HUMAN	E74-like factor 5 ESE-2a	195	ETS.				cell proliferation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.0087)|all_hematologic(20;0.0384)				CCCTATCTTCCCATTCCAGAA	0.418													9	69					0	0	0.000442599	0	0
EHF	26298	broad.mit.edu	37	11	34680103	34680103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:34680103G>A	uc001mvr.1	+	8	742	c.631G>A	c.(631-633)GAA>AAA	p.E211K	EHF_uc009yke.1_Missense_Mutation_p.E188K|EHF_uc009ykf.1_Missense_Mutation_p.E214K	NM_012153	NP_036285	Q9NZC4	EHF_HUMAN	ets homologous factor	211	ETS.				cell proliferation|epithelial cell differentiation|multicellular organismal development|positive regulation of transcription, DNA-dependent		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(20;0.117)	Epithelial(1;0.055)|all cancers(1;0.137)|STAD - Stomach adenocarcinoma(6;0.235)			TCACTTATGGGAATTCATCCG	0.468													12	64					0	0	0.000422831	0	0
PRR5L	79899	broad.mit.edu	37	11	36422691	36422691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:36422691C>T	uc001mwo.3	+	2	409	c.20C>T	c.(19-21)CCC>CTC	p.P7L	PRR5L_uc001mwp.2_Missense_Mutation_p.P7L|PRR5L_uc009ykk.2_Intron|PRR5L_uc010rfc.1_Missense_Mutation_p.P7L	NM_001160167	NP_001153639	Q6MZQ0	PRR5L_HUMAN	protor-2 isoform a	7										ovary(1)	1						GGCTTCGCTCCCATTCTGCCC	0.612													5	30					0	0	0.00116845	0	0
CHST1	8534	broad.mit.edu	37	11	45672010	45672011	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:45672010_45672011CC>TT	uc001mys.1	-	4	1134_1135	c.463_464GG>AA	c.(463-465)GGG>AAG	p.G155K		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	155	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		CCGGCTGGCCCCGCGGCGGAAG	0.683													12	53					0	0	6.4e-05	0	0
FOLH1	2346	broad.mit.edu	37	11	49175930	49175930	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:49175930G>A	uc001ngy.2	-	16	1999	c.1738C>T	c.(1738-1740)CGA>TGA	p.R580*	FOLH1_uc001ngx.2_Nonsense_Mutation_p.R12*|FOLH1_uc001ngz.2_Nonsense_Mutation_p.R580*|FOLH1_uc009yly.2_Nonsense_Mutation_p.R565*|FOLH1_uc009ylz.2_Nonsense_Mutation_p.R565*|FOLH1_uc009yma.2_Nonsense_Mutation_p.R272*	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	580	NAALADase.|Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	ATCCCTCCTCGAACCTGGGCC	0.413													6	23					0	0	0.000442599	0	0
OR4A15	81328	broad.mit.edu	37	11	55135834	55135834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:55135834C>T	uc010rif.1	+	1	475	c.475C>T	c.(475-477)CAT>TAT	p.H159Y		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	159	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TAAGCCTCTTCATGAATTGAT	0.413													10	91					0	0	0.000673444	0	0
OR5D14	219436	broad.mit.edu	37	11	55563361	55563361	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:55563361G>A	uc010rim.1	+	1	330	c.330G>A	c.(328-330)GTG>GTA	p.V110V		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				GCACTGCTGTGGTGACAGAGT	0.493													5	12					0	0	0.000602214	0	0
OR5L1	219437	broad.mit.edu	37	11	55579528	55579528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:55579528G>A	uc001nhw.1	+	1	586	c.586G>A	c.(586-588)GAG>AAG	p.E196K		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				CACTGTGAATGAGACACTGCT	0.443													9	98					0	0	0.000442599	0	0
OR5T1	390155	broad.mit.edu	37	11	56043350	56043350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:56043350C>T	uc001nio.1	+	1	236	c.236C>T	c.(235-237)TCA>TTA	p.S79L		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GGTGTTTTATCATTCTTGGAT	0.373													8	68					0	0	0.000157383	0	0
OR8J1	219477	broad.mit.edu	37	11	56128078	56128078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:56128078C>T	uc010rjh.1	+	1	356	c.356C>T	c.(355-357)GCC>GTC	p.A119V		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GCTTTGATGGCCTATGACCGC	0.488													6	68					0	0	0.00116845	0	0
OR5M11	219487	broad.mit.edu	37	11	56310098	56310098	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:56310098G>A	uc010rjl.1	-	1	636	c.636C>T	c.(634-636)ATC>ATT	p.I212I		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACACCAAGACGATGGTGAGGG	0.502													7	29					0	0	0.000157383	0	0
OR5AP2	338675	broad.mit.edu	37	11	56409227	56409227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:56409227G>A	uc001njb.1	-	1	689	c.689C>T	c.(688-690)GCC>GTC	p.A230V		NM_001002925	NP_001002925	Q8NGF4	O5AP2_HUMAN	olfactory receptor, family 5, subfamily AP,	230	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						CTTCAAGACGGCAATGAAGAT	0.448													6	117					0	0	0.00198382	0	0
OR9G4	283189	broad.mit.edu	37	11	56510996	56510996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:56510996C>T	uc010rjo.1	-	1	292	c.292G>A	c.(292-294)GCC>ACC	p.A98T		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ACACAACTGGCCAGGATTTTG	0.453													11	83					0	0	0.000308642	0	0
OR9G4	283189	broad.mit.edu	37	11	56511147	56511147	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:56511147C>T	uc010rjo.1	-	1	141	c.141G>A	c.(139-141)CTG>CTA	p.L47L		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AATAGAGCATCAGAAACACTC	0.423													5	32					0	0	0.000602214	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757303	56757303	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:56757303G>A	uc010rjp.1	+	1	915	c.915G>A	c.(913-915)GGG>GGA	p.G305G		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						AAGTGATAGGGAAAAAGTTAT	0.303													7	18					0	0	0.000274275	0	0
SERPING1	710	broad.mit.edu	37	11	57367465	57367465	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:57367465C>T	uc001nkp.1	+	3	356	c.165C>T	c.(163-165)TTC>TTT	p.F55F	SERPING1_uc001nkq.1_Silent_p.F55F|SERPING1_uc010rju.1_Silent_p.F3F|SERPING1_uc010rjv.1_Silent_p.F60F|SERPING1_uc001nkr.1_Silent_p.F55F|SERPING1_uc009ymi.1_Silent_p.F55F|SERPING1_uc009ymj.1_Silent_p.F55F|SERPING1_uc001nks.1_Intron	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	55					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						AGATGCTATTCGTTGAACCCA	0.343									Hereditary_Angioedema				7	58					0	0	0.000157383	0	0
CTNND1	1500	broad.mit.edu	37	11	57569650	57569650	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:57569650C>A	uc001nmc.3	+	7	1973	c.1402C>A	c.(1402-1404)CTT>ATT	p.L468I	CTNND1_uc001nlh.1_Missense_Mutation_p.L468I|CTNND1_uc001nlu.3_Missense_Mutation_p.L367I|CTNND1_uc001nlt.3_Missense_Mutation_p.L367I|CTNND1_uc001nls.3_Missense_Mutation_p.L367I|CTNND1_uc001nlw.3_Missense_Mutation_p.L367I|CTNND1_uc001nmf.3_Missense_Mutation_p.L468I|CTNND1_uc001nmd.3_Missense_Mutation_p.L414I|CTNND1_uc001nlk.3_Missense_Mutation_p.L414I|CTNND1_uc001nme.3_Missense_Mutation_p.L468I|CTNND1_uc001nll.3_Missense_Mutation_p.L414I|CTNND1_uc001nmg.3_Missense_Mutation_p.L414I|CTNND1_uc001nlj.3_Missense_Mutation_p.L414I|CTNND1_uc001nlr.3_Missense_Mutation_p.L414I|CTNND1_uc001nlp.3_Missense_Mutation_p.L414I|CTNND1_uc001nlx.3_Missense_Mutation_p.L145I|CTNND1_uc001nlz.3_Missense_Mutation_p.L145I|CTNND1_uc009ymn.2_Missense_Mutation_p.L145I|CTNND1_uc001nlm.3_Missense_Mutation_p.L468I|CTNND1_uc001nly.3_Missense_Mutation_p.L145I|CTNND1_uc001nmb.3_Missense_Mutation_p.L145I|CTNND1_uc001nma.3_Missense_Mutation_p.L145I|CTNND1_uc001nmi.3_Missense_Mutation_p.L367I|CTNND1_uc001nmh.3_Missense_Mutation_p.L468I|CTNND1_uc001nlq.3_Missense_Mutation_p.L367I|CTNND1_uc001nln.3_Missense_Mutation_p.L468I|CTNND1_uc001nli.3_Missense_Mutation_p.L468I|CTNND1_uc001nlo.3_Missense_Mutation_p.L367I|CTNND1_uc001nlv.3_Missense_Mutation_p.L367I	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	468	ARM 3.				adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				TGATATGGACCTTACTGAAGT	0.433													52	236					4.17463e-26	1.6842e-25	0.000781405	1	0
CTNND1	1500	broad.mit.edu	37	11	57576844	57576845	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:57576844_57576845AC>TT	uc001nmc.3	+	15	2912_2913	c.2341_2342AC>TT	c.(2341-2343)ACT>TTT	p.T781F	CTNND1_uc001nlh.1_Missense_Mutation_p.T781F|CTNND1_uc001nlu.3_Missense_Mutation_p.T674F|CTNND1_uc001nlt.3_Missense_Mutation_p.T674F|CTNND1_uc001nls.3_Missense_Mutation_p.T674F|CTNND1_uc001nlw.3_Missense_Mutation_p.T674F|CTNND1_uc001nmf.3_Missense_Mutation_p.T781F|CTNND1_uc001nmd.3_Missense_Mutation_p.T727F|CTNND1_uc001nlk.3_Missense_Mutation_p.T727F|CTNND1_uc001nme.3_Missense_Mutation_p.T775F|CTNND1_uc001nll.3_Missense_Mutation_p.T721F|CTNND1_uc001nmg.3_Missense_Mutation_p.T721F|CTNND1_uc001nlj.3_Missense_Mutation_p.T721F|CTNND1_uc001nlr.3_Missense_Mutation_p.T721F|CTNND1_uc001nlp.3_Missense_Mutation_p.T721F|CTNND1_uc001nlx.3_Missense_Mutation_p.T458F|CTNND1_uc001nlz.3_Missense_Mutation_p.T458F|CTNND1_uc009ymn.2_Missense_Mutation_p.T452F|CTNND1_uc001nlm.3_Missense_Mutation_p.T775F|CTNND1_uc001nly.3_Missense_Mutation_p.T452F|CTNND1_uc001nmb.3_Missense_Mutation_p.T452F|CTNND1_uc001nma.3_Missense_Mutation_p.T452F|CTNND1_uc001nmi.3_Missense_Mutation_p.T680F|CTNND1_uc001nmh.3_Missense_Mutation_p.T775F|CTNND1_uc001nlq.3_Missense_Mutation_p.T680F|CTNND1_uc001nln.3_Missense_Mutation_p.T775F|CTNND1_uc001nli.3_Missense_Mutation_p.T775F|CTNND1_uc001nlo.3_Missense_Mutation_p.T674F|CTNND1_uc001nlv.3_Missense_Mutation_p.T674F	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	781	ARM 10.				adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				TATTTTGAACACTATCAACGAG	0.446													7	70					0	0	6.4e-05	0	0
CTNND1	1500	broad.mit.edu	37	11	57577669	57577669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:57577669G>A	uc001nmc.3	+	16	3095	c.2524G>A	c.(2524-2526)GAA>AAA	p.E842K	CTNND1_uc001nlh.1_Missense_Mutation_p.E842K|CTNND1_uc001nlu.3_Missense_Mutation_p.E735K|CTNND1_uc001nlt.3_Missense_Mutation_p.E735K|CTNND1_uc001nls.3_Missense_Mutation_p.E735K|CTNND1_uc001nlw.3_Missense_Mutation_p.E735K|CTNND1_uc001nmf.3_Missense_Mutation_p.E842K|CTNND1_uc001nmd.3_Missense_Mutation_p.E788K|CTNND1_uc001nlk.3_Missense_Mutation_p.E788K|CTNND1_uc001nme.3_Missense_Mutation_p.E836K|CTNND1_uc001nll.3_Missense_Mutation_p.E782K|CTNND1_uc001nmg.3_Missense_Mutation_p.E782K|CTNND1_uc001nlj.3_Missense_Mutation_p.E782K|CTNND1_uc001nlr.3_Missense_Mutation_p.E782K|CTNND1_uc001nlp.3_Missense_Mutation_p.E782K|CTNND1_uc001nlx.3_Missense_Mutation_p.E519K|CTNND1_uc001nlz.3_Missense_Mutation_p.E519K|CTNND1_uc009ymn.2_Missense_Mutation_p.E513K|CTNND1_uc001nlm.3_Missense_Mutation_p.E836K|CTNND1_uc001nly.3_Missense_Mutation_p.E513K|CTNND1_uc001nmb.3_Missense_Mutation_p.E513K|CTNND1_uc001nma.3_Missense_Mutation_p.E513K|CTNND1_uc001nmi.3_Missense_Mutation_p.E741K|CTNND1_uc001nmh.3_Missense_Mutation_p.E836K|CTNND1_uc001nlq.3_Missense_Mutation_p.E741K|CTNND1_uc001nln.3_Missense_Mutation_p.E836K|CTNND1_uc001nli.3_Missense_Mutation_p.E836K|CTNND1_uc001nlo.3_Missense_Mutation_p.E735K|CTNND1_uc001nlv.3_Missense_Mutation_p.E735K	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	842					adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				ACTGGAAAAAGAAGGATGGAA	0.403													7	52					0	0	0.000274275	0	0
OR5A1	219982	broad.mit.edu	37	11	59210711	59210711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:59210711C>T	uc001nnx.1	+	1	70	c.70C>T	c.(70-72)CCA>TCA	p.P24S		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						CACAGACCATCCAGAACTCCA	0.532													13	71					0	0	0.00244969	0	0
MS4A3	932	broad.mit.edu	37	11	59831769	59831769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:59831769G>A	uc001nom.2	+	4	457	c.329G>A	c.(328-330)GGG>GAG	p.G110E	MS4A3_uc001non.2_Missense_Mutation_p.G64E|MS4A3_uc001noo.2_5'UTR	NM_006138	NP_006129	Q96HJ5	MS4A3_HUMAN	membrane-spanning 4-domains, subfamily A, member	110	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm	protein binding|receptor activity			ovary(2)|skin(1)	3		all_epithelial(135;0.245)				GTTGTAGCAGGGATAAAACCC	0.368													13	64					0	0	0.000958276	0	0
MS4A6A	64231	broad.mit.edu	37	11	59943007	59943007	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:59943007C>T	uc001nor.2	-	5	655	c.417G>A	c.(415-417)CAG>CAA	p.Q139Q	MS4A6A_uc001noq.2_Silent_p.Q139Q|MS4A6A_uc001nos.3_Silent_p.Q167Q|MS4A6A_uc009ymv.2_Silent_p.Q139Q|MS4A6A_uc001not.2_Silent_p.Q139Q|MS4A6A_uc010rla.1_Silent_p.Q167Q|MS4A6A_uc010rlb.1_Silent_p.Q94Q	NM_152852	NP_690591	Q9H2W1	M4A6A_HUMAN	membrane-spanning 4-domains, subfamily A, member	139	Extracellular (Potential).					integral to membrane	receptor activity				0						TTAAGGTGGCCTGTTTGACAG	0.418													5	35					0	0	0.000602214	0	0
MS4A1	931	broad.mit.edu	37	11	60235852	60235852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:60235852G>A	uc001npp.2	+	8	1221	c.805G>A	c.(805-807)GAA>AAA	p.E269K	MS4A1_uc001npq.2_Missense_Mutation_p.E269K|MS4A1_uc009yna.2_Missense_Mutation_p.E269K|MS4A1_uc009ymz.2_Missense_Mutation_p.E256K|MS4A1_uc010rlc.1_Missense_Mutation_p.E102K	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	269	Cytoplasmic (Potential).				B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	TCCAATCCAAGAAGAGGAAGA	0.378													7	29					0	0	0.000157383	0	0
SYT7	9066	broad.mit.edu	37	11	61290547	61290547	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:61290547C>T	uc001nrv.2	-	8	1113	c.1107G>A	c.(1105-1107)AAG>AAA	p.K369K	SYT7_uc009ynr.2_Silent_p.K444K	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	369	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						TCGCCCCTACCTTGCCGATGA	0.597													10	92					0	0	0.000978159	0	0
DAGLA	747	broad.mit.edu	37	11	61508053	61508053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:61508053G>A	uc001nsa.2	+	18	2083	c.1972G>A	c.(1972-1974)GGG>AGG	p.G658R		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	658	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GGTCATGGAGGGGCTCAACAA	0.458													10	84					0	0	0.000978159	0	0
DAGLA	747	broad.mit.edu	37	11	61511339	61511339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:61511339C>T	uc001nsa.2	+	20	2618	c.2507C>T	c.(2506-2508)TCG>TTG	p.S836L		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	836	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		TCCCTGAGCTCGCGCACTGAG	0.672													12	147					0	0	0.000566183	0	0
INCENP	3619	broad.mit.edu	37	11	61914343	61914343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:61914343C>T	uc001nsw.1	+	15	2375	c.2173C>T	c.(2173-2175)CGG>TGG	p.R725W	INCENP_uc009ynw.1_Missense_Mutation_p.R729W|INCENP_uc001nsx.1_Missense_Mutation_p.R721W|INCENP_uc001nsy.1_Missense_Mutation_p.R139W	NM_001040694	NP_001035784	Q9NQS7	INCE_HUMAN	inner centromere protein antigens 135/155kDa	725	Potential.				chromosome segregation|cytokinesis|mitotic prometaphase	centromeric heterochromatin|condensed chromosome kinetochore|cytosol|microtubule|spindle	protein binding			lung(1)	1						gcaggagcgtcggcgggagca	0.259													4	10					0	0	0.000602214	0	0
SLC22A25	387601	broad.mit.edu	37	11	62951205	62951205	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:62951205C>T	uc001nwr.1	-	5	915	c.915G>A	c.(913-915)AGG>AGA	p.R305R	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Silent_p.R305R	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	305	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						TCATTCCATTCCTGTGTGCAG	0.463													16	73					0	0	0.00074312	0	0
HRASLS5	117245	broad.mit.edu	37	11	63235936	63235936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:63235936C>T	uc001nwy.2	-	4	551	c.377G>A	c.(376-378)GGA>GAA	p.G126E	HRASLS5_uc001nwz.2_Missense_Mutation_p.G116E|HRASLS5_uc010rmq.1_Missense_Mutation_p.G126E|HRASLS5_uc009yos.2_Intron	NM_054108	NP_473449	Q96KN8	HRSL5_HUMAN	HRAS-like suppressor family, member 5 isoform 1	126										ovary(1)	1						TCTTGGTTTTCCCTATAATGG	0.453													9	82					0	0	0.000274275	0	0
KCNK4	50801	broad.mit.edu	37	11	64065031	64065031	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:64065031C>T	uc001nzj.1	+	5	890	c.567C>T	c.(565-567)TTC>TTT	p.F189F	KCNK4_uc001nzk.1_Intron|KCNK4_uc010rnk.1_Silent_p.F17F|KCNK4_uc001nzl.1_Intron|KCNK4_uc001nzm.3_RNA|KCNK4_uc001nzn.1_Silent_p.F189F|KCNK4_uc001nzo.2_Silent_p.F189F|KCNK4_uc001nzp.1_Silent_p.F75F|C11orf20_uc009ypm.2_5'Flank	NM_033310	NP_201567	Q9NYG8	KCNK4_HUMAN	TRAAK	189	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity				0						CGCCCACGTTCGTGTTCTGCT	0.577													10	61					0	0	0.000978159	0	0
SLC22A11	55867	broad.mit.edu	37	11	64329570	64329570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:64329570G>A	uc001oai.2	+	3	966	c.592G>A	c.(592-594)GGC>AGC	p.G198S	SLC22A11_uc001oah.1_Missense_Mutation_p.R163Q|SLC22A11_uc001oaj.2_Missense_Mutation_p.G198S|SLC22A11_uc009ypq.2_Missense_Mutation_p.G198S|SLC22A11_uc001oak.1_Missense_Mutation_p.G27S	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	198	Extracellular (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	CATCTACTGCGGCCTGCGGTT	0.637											OREG0004030	type=REGULATORY REGION|Gene=SLC22A11|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	10	39					0	0	0.000978159	0	0
SLC22A11	55867	broad.mit.edu	37	11	64329895	64329895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:64329895C>T	uc001oai.2	+	4	1183	c.809C>T	c.(808-810)TCC>TTC	p.S270F	SLC22A11_uc001oah.1_Silent_p.L235L|SLC22A11_uc001oaj.2_Missense_Mutation_p.S270F|SLC22A11_uc009ypq.2_Missense_Mutation_p.S270F|SLC22A11_uc001oak.1_Missense_Mutation_p.S99F	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	270	Helical; (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	TTTGCCATCTCCCTGATATCC	0.617													9	87					0	0	0.000673444	0	0
SLC22A11	55867	broad.mit.edu	37	11	64336179	64336179	+	Silent	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:64336179A>C	uc001oai.2	+	8	1685	c.1311A>C	c.(1309-1311)GGA>GGC	p.G437G	SLC22A11_uc001oaj.2_Silent_p.G437G|SLC22A11_uc009ypq.2_Intron	NM_018484	NP_060954	Q9NSA0	S22AB_HUMAN	solute carrier family 22 member 11	437	Helical; (Potential).				urate metabolic process	apical plasma membrane|external side of plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium-independent organic anion transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2					Probenecid(DB01032)	CTGTGCTGGGAAAGGGATGTT	0.582													13	85					0	0	0.000308642	0	0
BATF2	116071	broad.mit.edu	37	11	64756799	64756799	+	Silent	SNP	G	A	A	rs143335032	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:64756799G>A	uc001ocf.1	-	3	758	c.627C>T	c.(625-627)CTC>CTT	p.L209L	BATF2_uc001oce.1_Silent_p.L124L	NM_138456	NP_612465	Q8N1L9	BATF2_HUMAN	basic leucine zipper transcription factor,	209						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GCTCCAGCTCGAGGGGCTGTG	0.642													5	22					0	0	0.000157383	0	0
BATF2	116071	broad.mit.edu	37	11	64756867	64756867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:64756867C>T	uc001ocf.1	-	3	690	c.559G>A	c.(559-561)GGG>AGG	p.G187R	BATF2_uc001oce.1_Missense_Mutation_p.G102R	NM_138456	NP_612465	Q8N1L9	BATF2_HUMAN	basic leucine zipper transcription factor,	187						nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAGGAAGACCCCTGCAGGCTG	0.657													7	25					0	0	0.000157383	0	0
SPDYC	387778	broad.mit.edu	37	11	64938905	64938905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:64938905G>A	uc010rnz.1	+	2	134	c.134G>A	c.(133-135)GGT>GAT	p.G45D		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	45					cell cycle	nucleus	protein kinase binding				0						AGCCGGCAAGGTGGGGGCAAT	0.627													5	13					0	0	0.00116845	0	0
DPF2	5977	broad.mit.edu	37	11	65113820	65113820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:65113820C>T	uc001odm.2	+	9	1019	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	DPF2_uc001odn.2_Missense_Mutation_p.S350F|DPF2_uc010roe.1_Intron	NM_006268	NP_006259	Q92785	REQU_HUMAN	D4, zinc and double PHD fingers family 2	336	PHD-type 2.				apoptosis|induction of apoptosis by extracellular signals|regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						TGCGGCACCTCCGAGAATGAC	0.517													4	18					0	0	0.00024832	0	0
PELI3	246330	broad.mit.edu	37	11	66241261	66241261	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:66241261C>T	uc001oic.3	+	7	869	c.705C>T	c.(703-705)ACC>ACT	p.T235T	PELI3_uc001oib.2_Silent_p.T235T|PELI3_uc001oid.3_Silent_p.T211T|PELI3_uc001oie.3_Silent_p.T86T|PELI3_uc010rpd.1_Silent_p.T76T	NM_145065	NP_659502	Q8N2H9	PELI3_HUMAN	pellino 3 alpha isoform 1	235						cytosol	protein binding			ovary(1)	1						GACTGACCACCAATGGAGTCC	0.637													5	35					0	0	0.000602214	0	0
CTSF	8722	broad.mit.edu	37	11	66334760	66334760	+	Silent	SNP	C	T	T	rs140630766		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:66334760C>T	uc001oip.2	-	4	654	c.564G>A	c.(562-564)AAG>AAA	p.K188K		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	188					proteolysis	lysosome	cysteine-type endopeptidase activity				0						TGACAAAGTTCTTGAAGATTG	0.498													11	114					0	0	0.00136819	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67177203	67177203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:67177203C>T	uc001ola.2	+	10	1348	c.1319C>T	c.(1318-1320)TCC>TTC	p.S440F	PPP1CA_uc001okx.1_Intron|TBC1D10C_uc001okz.2_3'UTR|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	440	Interaction with calcineurin.					intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GGCTCCACCTCCTTCCTGGAC	0.657													6	20					0	0	0.00198382	0	0
GPR152	390212	broad.mit.edu	37	11	67219347	67219347	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:67219347C>T	uc001olm.2	-	1	854	c.849G>A	c.(847-849)CTG>CTA	p.L283L	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	283	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			TGAGTAGGATCAGGTAGTCGG	0.652													6	36					0	0	0.00116845	0	0
SUV420H1	51111	broad.mit.edu	37	11	67926500	67926500	+	Missense_Mutation	SNP	G	A	A	rs78084492		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:67926500G>A	uc001onm.1	-	11	1569	c.1313C>T	c.(1312-1314)CCA>CTA	p.P438L	SUV420H1_uc009yse.1_Missense_Mutation_p.P24L|SUV420H1_uc001onn.1_Missense_Mutation_p.P266L|SUV420H1_uc009ysf.2_Missense_Mutation_p.P198L	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	438					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						CAGTTTCTTTGGTACCCTGGA	0.388													15	78					0	0	0.00074312	0	0
LRP5	4041	broad.mit.edu	37	11	68201193	68201193	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:68201193C>G	uc001ont.2	+	18	3962	c.3887C>G	c.(3886-3888)CCC>CGC	p.P1296R	LRP5_uc009ysg.2_Missense_Mutation_p.P706R	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1296	LDL-receptor class A 1.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						GAGGGCTGCCCCGTGTGCTCC	0.687													4	86					0	0	0.00198382	0	0
SHANK2	22941	broad.mit.edu	37	11	70319071	70319071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:70319071G>A	uc001oqc.2	-	22	5531	c.5453C>T	c.(5452-5454)CCA>CTA	p.P1818L	SHANK2_uc010rqn.1_Missense_Mutation_p.P1230L|SHANK2_uc001opz.2_Missense_Mutation_p.P1223L|uc009ysn.1_5'UTR|SHANK2_uc001opy.2_Missense_Mutation_p.P154L	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1439	SAM.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CTGCAGGTTTGGTAAGTGACT	0.483													18	160					0	0	0.00074312	0	0
SHANK2	22941	broad.mit.edu	37	11	70319106	70319106	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:70319106G>A	uc001oqc.2	-	22	5496	c.5418C>T	c.(5416-5418)GCC>GCT	p.A1806A	SHANK2_uc010rqn.1_Silent_p.A1218A|SHANK2_uc001opz.2_Silent_p.A1211A|uc009ysn.1_Silent_p.K2K|SHANK2_uc001opy.2_Silent_p.A142A	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1427	SAM.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TGTCCATGAAGGCCTCTTTAT	0.468													9	140					0	0	0.000274275	0	0
FOLR3	2352	broad.mit.edu	37	11	71847057	71847057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:71847057G>A	uc001ory.1	+	2	109	c.59G>A	c.(58-60)GGG>GAG	p.G20E	FOLR3_uc001orx.1_Missense_Mutation_p.G20E			P41439	FOLR3_HUMAN	SubName: Full=FOLR3 protein; Flags: Fragment;	18					folic acid transport	extracellular region|extrinsic to membrane|membrane fraction	folic acid binding|receptor activity				0					Folic Acid(DB00158)	ACTGCTGCGGGGAGTGCCCAG	0.617													19	121					0	0	0.00152264	0	0
INPPL1	3636	broad.mit.edu	37	11	71944715	71944715	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:71944715C>T	uc001osf.2	+	19	2286	c.2139C>T	c.(2137-2139)ATC>ATT	p.I713I	INPPL1_uc001osg.2_Silent_p.I471I	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	713					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CTGATGACATCGTCACCAGCG	0.552													9	66					0	0	0.000274275	0	0
ARAP1	116985	broad.mit.edu	37	11	72422081	72422081	+	Missense_Mutation	SNP	G	A	A	rs147507879		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:72422081G>A	uc001osu.2	-	9	1387	c.1198C>T	c.(1198-1200)CGG>TGG	p.R400W	ARAP1_uc001osv.2_Missense_Mutation_p.R400W|ARAP1_uc001osr.2_Missense_Mutation_p.R160W|ARAP1_uc001oss.2_Missense_Mutation_p.R155W|ARAP1_uc009yth.2_Missense_Mutation_p.R155W|ARAP1_uc010rre.1_Missense_Mutation_p.R155W	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	400	PH 1.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CTCTCTGCCCGGAAGGCAAAG	0.532													24	202					0	0	0.000720815	0	0
ARAP1	116985	broad.mit.edu	37	11	72423291	72423292	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:72423291_72423292GG>AA	uc001osu.2	-	7	1160_1161	c.971_972CC>TT	c.(970-972)CCC>CTT	p.P324L	ARAP1_uc001osv.2_Missense_Mutation_p.P324L|ARAP1_uc001osr.2_Missense_Mutation_p.P84L|ARAP1_uc001oss.2_Missense_Mutation_p.P79L|ARAP1_uc009yth.2_Missense_Mutation_p.P79L|ARAP1_uc010rre.1_Missense_Mutation_p.P79L	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	324					actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						CTGGTGTGACGGGGGTGGAGCC	0.663													16	222					0	0	6.4e-05	0	0
CHRDL2	25884	broad.mit.edu	37	11	74407598	74407598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:74407598C>T	uc001ovi.2	-	11	1499	c.1246G>A	c.(1246-1248)GAG>AAG	p.E416K	CHRDL2_uc001ovg.2_Missense_Mutation_p.E300K|CHRDL2_uc001ovh.2_Missense_Mutation_p.G434E			Q6WN34	CRDL2_HUMAN	RecName: Full=Chordin-like protein 2; AltName: Full=Chordin-related protein 2; AltName: Full=Breast tumor novel factor 1;          Short=BNF-1; Flags: Precursor;	416					cartilage development|cell differentiation|ossification	extracellular region|mitochondrion					0	Hepatocellular(1;0.098)					ACCTTCAGCTCCAGGGTCTGG	0.483													8	74					0	0	0.000274275	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74911432	74911432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:74911432G>A	uc001owb.2	+	11	2150	c.1763G>A	c.(1762-1764)AGA>AAA	p.R588K	SLCO2B1_uc010rrq.1_Missense_Mutation_p.R333K|SLCO2B1_uc010rrr.1_Missense_Mutation_p.R444K|SLCO2B1_uc010rrs.1_Missense_Mutation_p.R472K|SLCO2B1_uc001owc.2_Missense_Mutation_p.R361K|SLCO2B1_uc001owd.2_Missense_Mutation_p.R566K	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	588	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	CTCATCCTAAGGTGAAGGTGG	0.602													6	65					0	0	0.00116845	0	0
LRRC32	2615	broad.mit.edu	37	11	76372536	76372536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:76372536G>A	uc001oxq.3	-	3	344	c.101C>T	c.(100-102)TCG>TTG	p.S34L	LRRC32_uc001oxr.3_Missense_Mutation_p.S34L|LRRC32_uc010rsf.1_Missense_Mutation_p.S34L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	34	Extracellular (Potential).					integral to plasma membrane					0						AACCTGGCACGAGACCTTCTT	0.602													4	10					0	0	0.00024832	0	0
MYO7A	4647	broad.mit.edu	37	11	76922935	76922935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:76922935C>T	uc001oyb.2	+	46	6579	c.6307C>T	c.(6307-6309)CTC>TTC	p.L2103F	MYO7A_uc001oyc.2_Missense_Mutation_p.L2065F|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	2103	FERM 2.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CTTCCTGAAGCTCATCTTCAA	0.577													7	32					0	0	0.000274275	0	0
PAK1	5058	broad.mit.edu	37	11	77047244	77047244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:77047244C>T	uc001oyh.3	-	13	1833	c.1300G>A	c.(1300-1302)GAG>AAG	p.E434K	PAK1_uc010rso.1_Missense_Mutation_p.E336K|PAK1_uc001oyg.3_Missense_Mutation_p.E434K|PAK1_uc001oyi.1_Missense_Mutation_p.E434K|PAK1_uc010rsn.1_Missense_Mutation_p.E147K	NM_002576	NP_002567	Q13153	PAK1_HUMAN	p21-activated kinase 1 isoform 2	434	Protein kinase.				apoptosis|axon guidance|cytoskeleton organization|ER-nucleus signaling pathway|positive regulation of JUN kinase activity|positive regulation of peptidyl-serine phosphorylation|protein autophosphorylation|T cell costimulation|T cell receptor signaling pathway	cytosol|focal adhesion|Golgi apparatus	ATP binding|collagen binding|protein binding|protein serine/threonine kinase activity			skin(2)|stomach(1)|lung(1)	4	all_cancers(14;1.75e-18)					GTCACAACCTCTGGTGCCATC	0.502													6	46					0	0	0.00198382	0	0
CCDC83	220047	broad.mit.edu	37	11	85606413	85606413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:85606413G>A	uc001pbh.1	+	6	1101	c.589G>A	c.(589-591)GAA>AAA	p.E197K	CCDC83_uc001pbg.1_Missense_Mutation_p.E197K|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Missense_Mutation_p.E98K	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	197										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CCAAAAGAAGGAATGGGCCAC	0.284													21	115					0	0	0.00047179	0	0
NOX4	50507	broad.mit.edu	37	11	89133540	89133540	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:89133540A>G	uc001pct.2	-	10	1093	c.854T>C	c.(853-855)CTT>CCT	p.L285P	NOX4_uc009yvr.2_Missense_Mutation_p.L260P|NOX4_uc001pcu.2_Missense_Mutation_p.L211P|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Missense_Mutation_p.L285P|NOX4_uc009yvo.2_Intron|NOX4_uc010rtu.1_Missense_Mutation_p.L119P|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Missense_Mutation_p.L261P|NOX4_uc009yvq.2_Missense_Mutation_p.L261P	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	285	Extracellular (Potential).|Ferric oxidoreductase.|Mediates interaction with TLR4.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				AGAAATCCAAAGCCAAGTCTA	0.388													3	18					0	0	0.000602214	0	0
NAALAD2	10003	broad.mit.edu	37	11	89911136	89911136	+	Missense_Mutation	SNP	G	A	A	rs150474449		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:89911136G>A	uc001pdf.3	+	16	1818	c.1709G>A	c.(1708-1710)CGA>CAA	p.R570Q	NAALAD2_uc009yvx.2_Missense_Mutation_p.R537Q|NAALAD2_uc009yvy.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	570	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GCTCAATTACGAGGAGCACTG	0.348													6	62					0	0	0.000157383	0	0
FAT3	120114	broad.mit.edu	37	11	92087131	92087131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:92087131G>A	uc001pdj.3	+	1	1870	c.1853G>A	c.(1852-1854)GGA>GAA	p.G618E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	618	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATCATTTCTGGAAATGAACTT	0.363										TCGA Ovarian(4;0.039)			20	278					0	0	0.00278032	0	0
FAT3	120114	broad.mit.edu	37	11	92087581	92087581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:92087581G>A	uc001pdj.3	+	1	2320	c.2303G>A	c.(2302-2304)GGA>GAA	p.G768E		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	768	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATATCAGATGGAAATACGGAT	0.408										TCGA Ovarian(4;0.039)			26	267					0	0	0.00106085	0	0
FAT3	120114	broad.mit.edu	37	11	92531727	92531727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:92531727C>T	uc001pdj.3	+	9	5565	c.5548C>T	c.(5548-5550)CAT>TAT	p.H1850Y		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1850	Cadherin 16.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTCCATTTTCATGTGCATGT	0.463										TCGA Ovarian(4;0.039)			24	251					0	0	0.00127121	0	0
FAT3	120114	broad.mit.edu	37	11	92533811	92533811	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:92533811C>T	uc001pdj.3	+	9	7649	c.7632C>T	c.(7630-7632)TTC>TTT	p.F2544F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2544	Cadherin 23.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGGATCGATTCCTCATAGACA	0.483										TCGA Ovarian(4;0.039)			38	260					0	0	0.00195071	0	0
C11orf75	56935	broad.mit.edu	37	11	93212333	93212333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:93212333G>A	uc001pds.3	-	3	281	c.23C>T	c.(22-24)CCC>CTC	p.P8L	C11orf75_uc001pdr.2_RNA	NM_020179	NP_064564	Q9NRQ5	CK075_HUMAN	hypothetical protein LOC56935	8						integral to membrane					0		Acute lymphoblastic leukemia(157;2.38e-05)|all_hematologic(158;0.00824)				CTCCTTCTTGGGCTTCCCTTT	0.602													12	53					0	0	0.000308642	0	0
HEPHL1	341208	broad.mit.edu	37	11	93754684	93754684	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:93754684G>A	uc001pep.2	+	1	307	c.150G>A	c.(148-150)GGG>GGA	p.G50G		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	50	Plastocyanin-like 1.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TTATTACTGGGAAAAGTTTCA	0.453													12	108					0	0	0.000308642	0	0
PANX1	24145	broad.mit.edu	37	11	93913146	93913146	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:93913146G>A	uc001per.2	+	4	1309	c.924G>A	c.(922-924)GTG>GTA	p.V308V	PANX1_uc001peq.2_Silent_p.V308V	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	308	Cytoplasmic (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTCTCAAAGTGTACGAAATCC	0.438													7	23					0	0	0.00198382	0	0
GPR83	10888	broad.mit.edu	37	11	94113452	94113452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:94113452G>A	uc001pet.2	-	4	1307	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	379	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				CTGAAGGAAGGAACTGGGGAG	0.562													11	51					0	0	0.00136819	0	0
TRPC6	7225	broad.mit.edu	37	11	101344298	101344298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:101344298C>T	uc001pgk.3	-	7	2376	c.1951G>A	c.(1951-1953)GGA>AGA	p.G651R	TRPC6_uc009ywy.2_Missense_Mutation_p.G535R|TRPC6_uc009ywz.1_Missense_Mutation_p.G596R	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	651	Helical; (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		TTGAACATTCCAATCATAAAG	0.358													8	31					0	0	0.000274275	0	0
KIAA1377	57562	broad.mit.edu	37	11	101833039	101833039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:101833039G>A	uc001pgm.2	+	6	1543	c.1273G>A	c.(1273-1275)GAT>AAT	p.D425N	KIAA1377_uc001pgn.2_Missense_Mutation_p.D381N|KIAA1377_uc010run.1_Missense_Mutation_p.D226N|KIAA1377_uc009yxa.1_Missense_Mutation_p.D226N	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	425							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AAGCACTTCAGATTCTCTAAC	0.383													13	48					0	0	0.00136819	0	0
C11orf70	85016	broad.mit.edu	37	11	101953871	101953871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:101953871C>T	uc001pgp.2	+	7	773	c.745C>T	c.(745-747)CCT>TCT	p.P249S	C11orf70_uc001pgq.2_Missense_Mutation_p.P211S	NM_032930	NP_116319	Q9BRQ4	CK070_HUMAN	hypothetical protein LOC85016	249										skin(1)	1	all_epithelial(12;0.0137)	Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.0137)	Lung(13;0.245)	BRCA - Breast invasive adenocarcinoma(274;0.0335)		TATTGTGGATCCTATCAGGCG	0.338													27	184					0	0	0.001512	0	0
BIRC2	329	broad.mit.edu	37	11	102221006	102221006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:102221006C>T	uc001pgy.2	+	2	1820	c.421C>T	c.(421-423)CCC>TCC	p.P141S	BIRC2_uc010ruq.1_Missense_Mutation_p.P92S|BIRC2_uc010rur.1_Missense_Mutation_p.P141S	NM_001166	NP_001157	Q13490	BIRC2_HUMAN	baculoviral IAP repeat-containing protein 2	141					cell surface receptor linked signaling pathway|cellular component disassembly involved in apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteasomal ubiquitin-dependent protein catabolic process|protein polyubiquitination	CD40 receptor complex|cytosol|internal side of plasma membrane	protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|Epithelial(9;0.11)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0144)		TTCATTATCTCCCACCTTGGA	0.428													28	88					0	0	0.00127121	0	0
MMP13	4322	broad.mit.edu	37	11	102826123	102826123	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:102826123A>C	uc001phl.2	-	2	248	c.220T>G	c.(220-222)TTC>GTC	p.F74V		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	74			F -> S (in MANDP1).		collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		AAGCCGAAGAAAGACTGCATT	0.473													6	81					0	0	0.00198382	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103124167	103124167	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:103124167T>C	uc001pho.2	+	66	10340	c.10196T>C	c.(10195-10197)TTA>TCA	p.L3399S	DYNC2H1_uc001phn.1_Missense_Mutation_p.L3406S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3399	AAA 5 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AGAAGTGGATTACGAGGGCAG	0.363													20	85					0	0	0.00047179	0	0
DDI1	414301	broad.mit.edu	37	11	103907887	103907887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:103907887G>A	uc001phr.2	+	1	580	c.337G>A	c.(337-339)GGA>AGA	p.G113R	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	113					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		ACAGCACCCTGGACAGCAGCA	0.687													6	27					0	0	0.00116845	0	0
CASP5	838	broad.mit.edu	37	11	104871083	104871083	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:104871083A>C	uc010rva.1	-	6	889	c.857T>G	c.(856-858)CTG>CGG	p.L286R	CASP5_uc010ruz.1_Missense_Mutation_p.L299R|CASP5_uc010rvb.1_Missense_Mutation_p.L228R|CASP5_uc010rvc.1_Missense_Mutation_p.L144R|CASP5_uc009yxh.2_Missense_Mutation_p.L68R|CASP5_uc010rvd.1_Missense_Mutation_p.L68R	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	286					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		GTCATAAAGCAGCACATCCGG	0.488													23	99					0	0	0.00188189	0	0
CASP5	838	broad.mit.edu	37	11	104874097	104874097	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:104874097G>A	uc010rva.1	-	4	479	c.447C>T	c.(445-447)ATC>ATT	p.I149I	CASP5_uc010ruz.1_Silent_p.I162I|CASP5_uc010rvb.1_Silent_p.I91I|CASP5_uc010rvc.1_Silent_p.I7I|CASP5_uc009yxh.2_Intron|CASP5_uc010rvd.1_Intron	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	149					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		GTCCAGCCTCGATTTGCAGAA	0.403													15	64					0	0	0.000308642	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106558403	106558403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:106558403G>A	uc001pjg.1	-	8	2461	c.2071C>T	c.(2071-2073)CCT>TCT	p.P691S	GUCY1A2_uc010rvo.1_Missense_Mutation_p.P712S|GUCY1A2_uc009yxn.1_Missense_Mutation_p.P722S	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	691					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		CAGATCCCAGGAATTTCCTTT	0.423													8	100					0	0	0.000274275	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106810698	106810698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:106810698C>T	uc001pjg.1	-	4	1084	c.694G>A	c.(694-696)GAA>AAA	p.E232K	GUCY1A2_uc010rvo.1_Missense_Mutation_p.E232K|GUCY1A2_uc009yxn.1_Missense_Mutation_p.E232K	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	232					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		AGAGTACCTTCAGGGAGCTCT	0.458													16	73					0	0	0.000422831	0	0
ELMOD1	55531	broad.mit.edu	37	11	107506453	107506453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:107506453G>A	uc010rvs.1	+	6	786	c.382G>A	c.(382-384)GAT>AAT	p.D128N	ELMOD1_uc001pjm.2_Missense_Mutation_p.D128N|ELMOD1_uc010rvt.1_Missense_Mutation_p.D122N	NM_018712	NP_061182	Q8N336	ELMD1_HUMAN	ELMO/CED-12 domain containing 1 isoform 1	128					phagocytosis	cytoskeleton	GTPase activator activity				0		Melanoma(852;0.000288)|Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00301)|all_epithelial(67;0.00304)|Breast(348;0.104)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)|Epithelial(105;0.00027)|all cancers(92;0.00481)		AGAGGCCTATGATTCTGATAA	0.388													9	45					0	0	0.000274275	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110451159	110451159	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:110451159C>T	uc001pkz.1	-	16	2796	c.2511G>A	c.(2509-2511)AAG>AAA	p.K837K	ARHGAP20_uc001pky.1_Silent_p.K814K|ARHGAP20_uc009yyb.1_Silent_p.K801K|ARHGAP20_uc001pla.1_Silent_p.K801K|ARHGAP20_uc001plb.2_Silent_p.K380K	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	837					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		TCCTTGGACCCTTGAGGGCAT	0.473													10	82					0	0	0.000673444	0	0
DRD2	1813	broad.mit.edu	37	11	113285125	113285125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:113285125C>T	uc001pnz.2	-	5	1103	c.782G>A	c.(781-783)GGG>GAG	p.G261E	DRD2_uc010rwv.1_Missense_Mutation_p.G260E|DRD2_uc001poa.3_Missense_Mutation_p.G261E|DRD2_uc001pob.3_Intron|DRD2_uc009yyr.1_Missense_Mutation_p.G261E	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	261	Cytoplasmic (By similarity).|Interaction with PPP1R9B (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	TGGGAAACTCCCATTAGACTT	0.567													18	120					0	0	0.00152264	0	0
HTR3B	9177	broad.mit.edu	37	11	113802506	113802506	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:113802506G>A	uc001pok.2	+	4	352	c.285G>A	c.(283-285)TGG>TGA	p.W95*	HTR3B_uc001pol.2_Nonsense_Mutation_p.W84*	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	95	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		TTTTATCCTGGAACTCCAGCA	0.413													11	67					0	0	0.000978159	0	0
ZBTB16	7704	broad.mit.edu	37	11	114121132	114121132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:114121132G>A	uc001pop.2	+	7	2141	c.1877G>A	c.(1876-1878)GGC>GAC	p.G626D	ZBTB16_uc001poq.2_Missense_Mutation_p.G626D	NM_006006	NP_005997	Q05516	ZBT16_HUMAN	promyelocytic leukemia zinc finger protein	626					apoptosis|central nervous system development|mesonephros development|myeloid cell differentiation|negative regulation of myeloid cell differentiation|negative regulation of transcription, DNA-dependent	nuclear speck|PML body|transcriptional repressor complex	protein homodimerization activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.79e-18)|all_epithelial(67;2.32e-10)|all_hematologic(158;2.96e-05)|Melanoma(852;0.000362)|Acute lymphoblastic leukemia(157;0.00108)|Breast(348;0.0104)|all_neural(223;0.0294)|Prostate(24;0.0318)|Medulloblastoma(222;0.0438)		BRCA - Breast invasive adenocarcinoma(274;6.75e-06)|Epithelial(105;0.000181)|all cancers(92;0.0018)		ACGCACAACGGCGCCTCGCCC	0.627													9	53					0	0	0.000673444	0	0
MLL	4297	broad.mit.edu	37	11	118374553	118374553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:118374553C>T	uc001pta.2	+	27	7960	c.7937C>T	c.(7936-7938)CCA>CTA	p.P2646L	MLL_uc001ptb.2_Missense_Mutation_p.P2649L	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2646					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GAAGACATTCCATTCTACAGC	0.493			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								5	33					0	0	0.000602214	0	0
POU2F3	25833	broad.mit.edu	37	11	120117175	120117175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:120117175G>A	uc001pxc.2	+	2	148	c.46G>A	c.(46-48)GAT>AAT	p.D16N	POU2F3_uc010rzk.1_5'UTR|POU2F3_uc010rzl.1_5'UTR	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	16					negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		GATGAGTGGGGATGTAGCCGA	0.473													17	88					0	0	0.000566183	0	0
GRIK4	2900	broad.mit.edu	37	11	120852905	120852905	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:120852905G>A	uc001pxn.2	+	20	2773	c.2486G>A	c.(2485-2487)TGG>TAG	p.W829*	GRIK4_uc009zaw.1_Nonsense_Mutation_p.W829*|GRIK4_uc009zax.1_Nonsense_Mutation_p.W829*	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	829	Cytoplasmic (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	GAGTTTTTATGGACTCTCAGA	0.423													22	203					0	0	0.00188189	0	0
TECTA	7007	broad.mit.edu	37	11	120976657	120976657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:120976657C>T	uc010rzo.1	+	2	182	c.182C>T	c.(181-183)CCT>CTT	p.P61L		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	61					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TTTGGCGTTCCTTACCGCACT	0.428													11	237					0	0	0.00185496	0	0
SORL1	6653	broad.mit.edu	37	11	121448065	121448065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:121448065G>A	uc001pxx.2	+	25	3616	c.3536G>A	c.(3535-3537)GGG>GAG	p.G1179E	SORL1_uc010rzp.1_Missense_Mutation_p.G25E	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1179	Extracellular (Potential).|LDL-receptor class A 3.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTATGTGACGGGGACAACGAC	0.537													5	69					0	0	0.00116845	0	0
SORL1	6653	broad.mit.edu	37	11	121475026	121475026	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:121475026C>T	uc001pxx.2	+	33	4724	c.4644C>T	c.(4642-4644)GCC>GCT	p.A1548A	SORL1_uc010rzp.1_Silent_p.A394A|SORL1_uc010rzq.1_Silent_p.A163A	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1548	Extracellular (Potential).|LDL-receptor class A 11.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ATGAAAAGGCCTGCAGTGGTG	0.552													6	23					0	0	0.00116845	0	0
ZNF202	7753	broad.mit.edu	37	11	123600433	123600433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:123600433C>T	uc001pzd.1	-	5	903	c.503G>A	c.(502-504)AGC>AAC	p.S168N	ZNF202_uc001pzc.1_5'UTR|ZNF202_uc001pze.1_Missense_Mutation_p.S168N|ZNF202_uc001pzf.1_Missense_Mutation_p.S168N	NM_003455	NP_003446	O95125	ZN202_HUMAN	zinc finger protein 202	168					lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.03)		GGGGGTCGAGCTTTGCACAGG	0.597													5	45					0	0	0.00198382	0	0
OR8D4	338662	broad.mit.edu	37	11	123777424	123777424	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:123777424G>A	uc010saa.1	+	1	286	c.286G>A	c.(286-288)GGA>AGA	p.G96R		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		CTCCTATTCTGGATGCATGAT	0.428													27	166					0	0	0.000692331	0	0
VWA5A	4013	broad.mit.edu	37	11	123988955	123988955	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:123988955G>A	uc001pzu.2	+	5	515	c.306G>A	c.(304-306)GGG>GGA	p.G102G	VWA5A_uc001pzr.2_Silent_p.G102G|VWA5A_uc001pzs.2_Silent_p.G102G|VWA5A_uc010sae.1_Silent_p.G118G|VWA5A_uc001pzt.2_Silent_p.G102G	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	102	VIT.									upper_aerodigestive_tract(1)|ovary(1)	2						TATTGGAGGGGGACAGCAGCT	0.577													5	42					0	0	0.00198382	0	0
VWA5A	4013	broad.mit.edu	37	11	124016019	124016019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:124016019G>A	uc001pzu.2	+	18	2439	c.2230G>A	c.(2230-2232)GAA>AAA	p.E744K	VWA5A_uc001pzt.2_Missense_Mutation_p.E744K	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	744										upper_aerodigestive_tract(1)|ovary(1)	2						CTTGAAGTGTGAATGGGAGCT	0.582													9	72					0	0	0.000274275	0	0
OR8D2	283160	broad.mit.edu	37	11	124189785	124189785	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:124189785G>A	uc010sah.1	-	1	309	c.309C>T	c.(307-309)TTC>TTT	p.F103F		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		AAATAAGGAAGAAATAAAGTT	0.403													5	18					0	0	0.000602214	0	0
OR8B2	26595	broad.mit.edu	37	11	124253113	124253113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:124253113G>A	uc010sai.1	-	1	127	c.127C>T	c.(127-129)CTT>TTT	p.L43F	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ATCAAGCCAAGGTTGCCTACC	0.423													6	58					0	0	0.00116845	0	0
OR8B2	26595	broad.mit.edu	37	11	124253228	124253228	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:124253228T>G	uc010sai.1	-	1	12	c.12A>C	c.(10-12)AGA>AGC	p.R4S	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		AGGAGTTGTTTCTAGCCAGCA	0.363													3	38					0	0	0.000602214	0	0
OR8B12	219858	broad.mit.edu	37	11	124412707	124412707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:124412707G>A	uc010sam.1	-	1	844	c.844C>T	c.(844-846)CCC>TCC	p.P282S		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TTTAACACGGGGACTATTATG	0.428													11	50					0	0	0.00185496	0	0
OR8B12	219858	broad.mit.edu	37	11	124413290	124413290	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:124413290C>T	uc010sam.1	-	1	261	c.261G>A	c.(259-261)AGG>AGA	p.R87R		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TGATGTTCTTCCTTGAGACAA	0.433													10	35					0	0	0.000673444	0	0
KCNJ5	3762	broad.mit.edu	37	11	128781827	128781827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:128781827G>A	uc001qet.2	+	2	973	c.659G>A	c.(658-660)CGG>CAG	p.R220Q	KCNJ5_uc009zck.2_Missense_Mutation_p.R220Q|KCNJ5_uc001qew.2_Missense_Mutation_p.R220Q	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	220	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	CTCATGTTCCGGGTGGGCGAC	0.587													8	45					0	0	0.000274275	0	0
BARX2	8538	broad.mit.edu	37	11	129246109	129246109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:129246109C>T	uc001qfc.3	+	1	229	c.179C>T	c.(178-180)TCC>TTC	p.S60F		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	60											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CCCCTGCATTCCTGTACGGGT	0.582											OREG0021508	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	100					0	0	0.00229938	0	0
ST14	6768	broad.mit.edu	37	11	130058514	130058514	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:130058514A>G	uc001qfw.2	+	3	524	c.331A>G	c.(331-333)ACT>GCT	p.T111A	ST14_uc010sca.1_5'Flank	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	111	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	CTCCAACTCCACTGAGTTTGT	0.567													8	74					0	0	0.000157383	0	0
ST14	6768	broad.mit.edu	37	11	130069911	130069911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:130069911G>A	uc001qfw.2	+	16	2066	c.1873G>A	c.(1873-1875)GAG>AAG	p.E625K		NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	625	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GGATGAGGGCGAGTGGCCCTG	0.622													6	49					0	0	0.000274275	0	0
NTM	50863	broad.mit.edu	37	11	132184559	132184559	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:132184559A>G	uc001qgp.2	+	6	1560	c.896A>G	c.(895-897)AAC>AGC	p.N299S	NTM_uc001qgm.2_Missense_Mutation_p.N299S|NTM_uc010sch.1_Missense_Mutation_p.N290S|NTM_uc010sci.1_Missense_Mutation_p.N299S|NTM_uc010scj.1_Missense_Mutation_p.N258S|NTM_uc001qgo.2_Missense_Mutation_p.N299S|NTM_uc001qgq.2_Missense_Mutation_p.N299S|NTM_uc001qgr.2_Missense_Mutation_p.N81S	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	299	Ig-like C2-type 3.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GTGGCCTCCAACAAGCTGGGC	0.507													7	48					0	0	0.00198382	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790076	133790076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:133790076G>A	uc001qgx.3	-	18	3775	c.3544C>T	c.(3544-3546)CGG>TGG	p.R1182W		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1182	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		CTGGCCTGCCGAGGGCTAGGC	0.716													13	52					0	0	0.00185496	0	0
GLB1L2	89944	broad.mit.edu	37	11	134212723	134212723	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:134212723C>T	uc001qhp.2	+	2	350	c.162C>T	c.(160-162)TTC>TTT	p.F54F		NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	54					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		GCTGGAACTTCATGCTGGAGG	0.602													8	43					0	0	0.000157383	0	0
SLC6A12	6539	broad.mit.edu	37	12	310982	310982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:310982G>A	uc001qhz.2	-	7	1067	c.524C>T	c.(523-525)GCC>GTC	p.A175V	SLC6A12_uc001qhx.2_5'Flank|SLC6A12_uc001qhy.2_5'Flank|SLC6A12_uc001qia.2_Missense_Mutation_p.A175V|SLC6A12_uc001qib.2_Missense_Mutation_p.A175V|SLC6A12_uc009zdh.1_Missense_Mutation_p.A175V|SLC6A12_uc009zdi.1_RNA	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	175	Extracellular (Potential).				cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			CACTGTGCCGGCTCCTGAGTG	0.512													8	99					0	0	0.000978159	0	0
B4GALNT3	283358	broad.mit.edu	37	12	663120	663120	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:663120C>T	uc001qii.1	+	14	2031	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	B4GALNT3_uc001qij.1_Silent_p.F580F|B4GALNT3_uc001qik.1_Silent_p.F226F	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	677	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CGCGAGTCTTCTTGAAGAAGC	0.607													16	39					0	0	0.000422831	0	0
PRMT8	56341	broad.mit.edu	37	12	3677890	3677890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:3677890G>A	uc001qmf.2	+	5	867	c.500G>A	c.(499-501)GGT>GAT	p.G167D	PRMT8_uc009zed.2_Missense_Mutation_p.G158D|PRMT8_uc009zee.1_RNA|PRMT8_uc001qmg.2_5'UTR	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	167					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			ATATTTAAGGGTAAAGTGGAA	0.522													10	30					0	0	0.000442599	0	0
CCND2	894	broad.mit.edu	37	12	4385251	4385251	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:4385251G>A	uc001qmo.2	+	2	581	c.276G>A	c.(274-276)CCG>CCA	p.P92P		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2	92	Cyclin N-terminal.				cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			CTGGGGTCCCGACTCCGAAGT	0.552			T	IGL@	NHL,CLL								17	62					0	0	0.00121646	0	0
CCND2	894	broad.mit.edu	37	12	4398042	4398042	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:4398042C>T	uc001qmo.2	+	4	911	c.606C>T	c.(604-606)ATC>ATT	p.I202I		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2	202					cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			CGTCGATGATCGCAACTGGAA	0.542			T	IGL@	NHL,CLL								30	138					0	0	0.000814825	0	0
AKAP3	10566	broad.mit.edu	37	12	4737087	4737087	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:4737087T>G	uc001qnb.3	-	4	1210	c.981A>C	c.(979-981)AAA>AAC	p.K327N		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	327					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						AGACCACCTCTTTTGCATGCT	0.478													6	32					0	0	0.00198382	0	0
ANO2	57101	broad.mit.edu	37	12	5841763	5841763	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:5841763G>A	uc001qnm.2	-	15	1540	c.1468C>T	c.(1468-1470)CGA>TGA	p.R490*		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	495	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						ATTTTCTCTCGAACTTTGGTT	0.453													17	51					0	0	0.000958276	0	0
ANO2	57101	broad.mit.edu	37	12	5939613	5939613	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:5939613G>A	uc001qnm.2	-	6	888	c.816C>T	c.(814-816)ACC>ACT	p.T272T		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	277	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TGCGGCTGCGGGTGGCATTAT	0.493													5	14					0	0	0.00198382	0	0
ANO2	57101	broad.mit.edu	37	12	5963215	5963215	+	Silent	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:5963215G>T	uc001qnm.2	-	4	687	c.615C>A	c.(613-615)ACC>ACA	p.T205T		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	209	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						ATACTTTCTTGGTAGGAACTT	0.512													9	173					0.000442599	0.00176687	0.000442599	1	0
VWF	7450	broad.mit.edu	37	12	6103305	6103305	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:6103305C>T	uc001qnn.1	-	37	6571	c.6321G>A	c.(6319-6321)TGG>TGA	p.W2107*	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2107	VWFD 4.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CAAGTGTTTTCCAGTCTGTGG	0.522													8	47					0	0	0.000157383	0	0
VWF	7450	broad.mit.edu	37	12	6167151	6167151	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:6167151C>T	uc001qnn.1	-	14	1843	c.1593G>A	c.(1591-1593)CAG>CAA	p.Q531Q	VWF_uc010set.1_Silent_p.Q531Q	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	531	VWFD 2.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AGTCGTCGCCCTGGTTGCCAT	0.662													7	59					0	0	0.000274275	0	0
PTPN6	5777	broad.mit.edu	37	12	7065716	7065716	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7065716G>A	uc001qsb.2	+	9	1301	c.1059G>A	c.(1057-1059)GAG>GAA	p.E353E	PTPN6_uc001qsa.1_Silent_p.E355E|PTPN6_uc010sfr.1_Silent_p.E314E|PTPN6_uc009zfl.1_Silent_p.E353E|PTPN6_uc010sfs.1_Silent_p.E341E	NM_002831	NP_002822	P29350	PTN6_HUMAN	protein tyrosine phosphatase, non-receptor type	353	Tyrosine-protein phosphatase.				apoptosis|cell junction assembly|G-protein coupled receptor protein signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|negative regulation of peptidyl-tyrosine phosphorylation|platelet activation|positive regulation of cell proliferation|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of G1/S transition of mitotic cell cycle|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol|membrane|nucleus	protein binding|protein tyrosine phosphatase activity			breast(1)	1						CCACCCGAGAGGTGGAGAAAG	0.622													13	49					0	0	0.00244969	0	0
CD163L1	283316	broad.mit.edu	37	12	7531880	7531880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7531880C>T	uc001qsy.2	-	9	2091	c.2065G>A	c.(2065-2067)GAG>AAG	p.E689K	CD163L1_uc010sge.1_Missense_Mutation_p.E699K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	689	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGCCTCAGCTCCATATCCGAT	0.448													5	23					0	0	0.00198382	0	0
CD163L1	283316	broad.mit.edu	37	12	7559219	7559219	+	Silent	SNP	G	A	A	rs143012538		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7559219G>A	uc001qsy.2	-	5	1022	c.996C>T	c.(994-996)TCC>TCT	p.S332S	CD163L1_uc010sge.1_Silent_p.S342S	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	332	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						ATTCATTACCGGAGCAGGAGA	0.473													12	49					0	0	0.00136819	0	0
CD163	9332	broad.mit.edu	37	12	7639184	7639184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7639184C>T	uc001qsz.3	-	10	2497	c.2369G>A	c.(2368-2370)GGA>GAA	p.G790E	CD163_uc001qta.3_Missense_Mutation_p.G790E|CD163_uc009zfw.2_Missense_Mutation_p.G823E	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	790	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GGATTCTTTTCCATTGCATTT	0.522													6	153					0	0	0.000274275	0	0
CD163	9332	broad.mit.edu	37	12	7639347	7639347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7639347G>A	uc001qsz.3	-	10	2334	c.2206C>T	c.(2206-2208)CAT>TAT	p.H736Y	CD163_uc001qta.3_Missense_Mutation_p.H736Y|CD163_uc009zfw.2_Missense_Mutation_p.H769Y	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	736	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GAGCCCTCATGATAGATCTCT	0.517													10	54					0	0	0.00185496	0	0
CD163	9332	broad.mit.edu	37	12	7647788	7647788	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7647788G>A	uc001qsz.3	-	6	1437	c.1309C>T	c.(1309-1311)CTG>TTG	p.L437L	CD163_uc001qta.3_Silent_p.L437L|CD163_uc009zfw.2_Silent_p.L437L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	437	SRCR 4.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CTTAGAAACAGCCATGTGTTT	0.438													12	71					0	0	0.00136819	0	0
GDF3	9573	broad.mit.edu	37	12	7842999	7842999	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7842999C>T	uc001qte.2	-	2	606	c.570G>A	c.(568-570)TGG>TGA	p.W190*		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	190					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGTTGTCATTCCAATCCTTAG	0.493													7	90					0	0	0.000442599	0	0
GDF3	9573	broad.mit.edu	37	12	7843083	7843083	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7843083C>T	uc001qte.2	-	2	522	c.486G>A	c.(484-486)AAG>AAA	p.K162K		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	162					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						TTTTACCTGGCTTAGGGGTGG	0.537													4	65					0	0	0.00024832	0	0
GDF3	9573	broad.mit.edu	37	12	7843273	7843273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:7843273G>A	uc001qte.2	-	2	332	c.296C>T	c.(295-297)TCC>TTC	p.S99F		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	99					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGAAGCTTGGGAAATTTTCTT	0.433													16	83					0	0	0.000422831	0	0
SLC2A3	6515	broad.mit.edu	37	12	8086449	8086449	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:8086449A>G	uc001qtr.2	-	2	327	c.65T>C	c.(64-66)TTC>TCC	p.F22S	SLC2A3_uc001qts.2_Missense_Mutation_p.F22S	NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	22	Helical; Name=1; (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		GCCAAATTGGAAAGAGCCGAT	0.438											OREG0021656	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	110					0	0	0.00188189	0	0
FAM90A1	55138	broad.mit.edu	37	12	8376069	8376069	+	Silent	SNP	G	A	A	rs141678042		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:8376069G>A	uc001qui.2	-	6	967	c.408C>T	c.(406-408)TCC>TCT	p.S136S	FAM90A1_uc001quh.2_Silent_p.S136S	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	136							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		AAGATTCCGTGGATCCTTTTT	0.517													16	49					0	0	0.000958276	0	0
CLEC4E	26253	broad.mit.edu	37	12	8692527	8692528	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:8692527_8692528AG>GA	uc001quo.1	-	2	218_219	c.53_54CT>TC	c.(52-54)TCT>TTC	p.S18F		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	18	Cytoplasmic (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					ACATTTGGGAAGAGAAGCATCC	0.406													8	158					0	0	6.4e-05	0	0
A2ML1	144568	broad.mit.edu	37	12	8990110	8990110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:8990110G>A	uc001quz.3	+	8	901	c.803G>A	c.(802-804)CGA>CAA	p.R268Q		NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	112						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TACTGGTATCGAGAGGTGGAA	0.433													6	56					0	0	0.000274275	0	0
A2ML1	144568	broad.mit.edu	37	12	9020603	9020603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:9020603C>T	uc001quz.3	+	30	3981	c.3883C>T	c.(3883-3885)CCT>TCT	p.P1295S	A2ML1_uc001qva.1_Missense_Mutation_p.P875S|A2ML1_uc010sgm.1_Missense_Mutation_p.P795S|A2ML1_uc001qvb.1_RNA	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	1139						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						GCCCAATGTCCCTGGAATGTA	0.488													7	91					0	0	0.000274275	0	0
STYK1	55359	broad.mit.edu	37	12	10777294	10777294	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:10777294G>A	uc001qys.2	-	8	1403	c.882C>T	c.(880-882)GCC>GCT	p.A294A		NM_018423	NP_060893	Q6J9G0	STYK1_HUMAN	serine/threonine/tyrosine kinase 1	294	Protein kinase.					integral to membrane|plasma membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8						GCCGTTCTGGGGCAAGCCACT	0.502										HNSCC(73;0.22)			12	121					0	0	0.000422831	0	0
TAS2R50	259296	broad.mit.edu	37	12	11138916	11138916	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:11138916G>A	uc001qzl.2	-	1	596	c.544C>T	c.(544-546)CTA>TTA	p.L182L	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176890	NP_795371	P59544	T2R50_HUMAN	taste receptor, type 2, member 50	182	Helical; Name=5; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(2)	2						AAGCTCCATAGGGTAGTTACA	0.403													7	71					0	0	0.00198382	0	0
TAS2R19	259294	broad.mit.edu	37	12	11174815	11174815	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:11174815A>G	uc010shj.1	-	1	356	c.356T>C	c.(355-357)CTC>CCC	p.L119P	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176888	NP_795369	P59542	T2R19_HUMAN	taste receptor, type 2, member 19	119	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1						CTTTAGGTGGAGAGAAATAAG	0.423													5	57					0	0	0.000602214	0	0
PRB1	5542	broad.mit.edu	37	12	11506726	11506727	+	Missense_Mutation	DNP	CC	TT	TT	rs144687469		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:11506726_11506727CC>TT	uc001qzw.1	-	3	347_348	c.310_311GG>AA	c.(310-312)GGA>AAA	p.G104K	PRB1_uc001qzu.1_Missense_Mutation_p.G104K|PRB1_uc001qzv.1_Missense_Mutation_p.G104K	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	165	6.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTGGTTACCTCCTTGTGGGGGT	0.619													8	299					0	0	6.4e-05	0	0
PRB2	653247	broad.mit.edu	37	12	11546467	11546467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:11546467C>T	uc010shk.1	-	3	580	c.545G>A	c.(544-546)GGA>GAA	p.G182E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGGGGTGGTCCTTGTGGCTT	0.597													20	152					0	0	0.001512	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716344	13716344	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:13716344G>A	uc001rbt.2	-	13	4007	c.3828C>T	c.(3826-3828)GCC>GCT	p.A1276A		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1276	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding	p.A1276V(1)		central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TAGTGGTGGAGGCGTTTGACG	0.582													9	63					0	0	0.000274275	0	0
GRIN2B	2904	broad.mit.edu	37	12	13724782	13724782	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:13724782G>A	uc001rbt.2	-	10	2306	c.2127C>T	c.(2125-2127)TTC>TTT	p.F709F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	709	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CCCTCTGGTTGAACTTTCCCA	0.468													26	112					0	0	0.00178596	0	0
GRIN2B	2904	broad.mit.edu	37	12	13761588	13761588	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:13761588G>A	uc001rbt.2	-	9	2138	c.1959C>T	c.(1957-1959)TTC>TTT	p.F653F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	653	Helical; (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CTTGGATCATGAAGGCAGCTA	0.498													5	25					0	0	0.000602214	0	0
PLBD1	79887	broad.mit.edu	37	12	14664330	14664330	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:14664330G>A	uc001rcc.1	-	8	1211	c.1050C>T	c.(1048-1050)ACC>ACT	p.T350T		NM_024829	NP_079105	Q6P4A8	PLBL1_HUMAN	phospholipase B domain containing 1	350					lipid catabolic process	extracellular region	hydrolase activity				0						GATTGTTATAGGTGCCTGAAA	0.393													6	92					0	0	0.00198382	0	0
GUCY2C	2984	broad.mit.edu	37	12	14778827	14778827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:14778827C>T	uc001rcd.2	-	21	2409	c.2272G>A	c.(2272-2274)GAA>AAA	p.E758K		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	758	Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						ATATAGCTTTCATTTTTTTGG	0.284													9	68					0	0	0.000274275	0	0
RERG	85004	broad.mit.edu	37	12	15264322	15264322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:15264322C>T	uc001rcs.2	-	3	288	c.148G>A	c.(148-150)GAT>AAT	p.D50N	RERG_uc001rct.2_Missense_Mutation_p.D50N|RERG_uc010shu.1_Missense_Mutation_p.D31N	NM_032918	NP_116307	Q96A58	RERG_HUMAN	RAS-like, estrogen-regulated, growth inhibitor	50					negative regulation of cell growth|negative regulation of cell proliferation|response to hormone stimulus|small GTPase mediated signal transduction	cytosol|membrane|nucleus	estrogen receptor binding|GDP binding|GTP binding|GTPase activity			lung(1)	1						ACTTCATCATCGATGGTTGCT	0.333													23	164					0	0	0.000720815	0	0
PTPRO	5800	broad.mit.edu	37	12	15734691	15734691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:15734691G>A	uc001rcv.1	+	23	3385	c.3211G>A	c.(3211-3213)GAA>AAA	p.E1071K	PTPRO_uc001rcw.1_Missense_Mutation_p.E1043K|PTPRO_uc001rcx.1_Missense_Mutation_p.E260K|PTPRO_uc001rcy.1_Missense_Mutation_p.E260K|PTPRO_uc001rcz.1_Missense_Mutation_p.E232K|PTPRO_uc001rda.1_Missense_Mutation_p.E232K	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	1071	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				GATTTCAGAGGAAGAGCAGGA	0.468													17	30					0	0	0.00074312	0	0
RERGL	79785	broad.mit.edu	37	12	18234187	18234187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:18234187C>T	uc001rdq.2	-	6	750	c.556G>A	c.(556-558)GGA>AGA	p.G186R	RERGL_uc001rdr.2_Missense_Mutation_p.G185R	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	186	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						GATTTAGATCCACTGGGACGT	0.388													9	41					0	0	0.000978159	0	0
PDE3A	5139	broad.mit.edu	37	12	20790115	20790115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:20790115C>T	uc001reh.1	+	9	2105	c.2083C>T	c.(2083-2085)CCA>TCA	p.P695S		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	695					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TTGGAATTTTCCAATTTTTGA	0.333													12	42					0	0	0.00185496	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21033868	21033868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:21033868G>A	uc001rek.2	+	11	1537	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K	SLCO1B3_uc001rel.2_Missense_Mutation_p.E471K|SLCO1B3_uc010sil.1_Missense_Mutation_p.E471K|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.E296K	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	471	Extracellular (Potential).|Kazal-like.				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					AAGTCAGTGGGAACCAGTCTG	0.368													17	89					0	0	0.00121646	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21349910	21349910	+	Missense_Mutation	SNP	G	A	A	rs11045853	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:21349910G>A	uc001req.3	+	8	862	c.758G>A	c.(757-759)CGA>CAA	p.R253Q		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	253	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	ACTGATTCTCGATGGGTTGGA	0.363													8	116					0	0	0.000442599	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21427408	21427408	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:21427408G>A	uc001rer.2	-	13	2039	c.1788C>T	c.(1786-1788)ACC>ACT	p.T596T	SLCO1A2_uc001res.2_Silent_p.T596T|SLCO1A2_uc010siq.1_Silent_p.T464T|SLCO1A2_uc010sio.1_Silent_p.T464T|SLCO1A2_uc010sip.1_Silent_p.T464T	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	596	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTTACCTGAAGGTGGTGGAAT	0.368													8	37					0	0	0.000157383	0	0
PYROXD1	79912	broad.mit.edu	37	12	21608113	21608113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:21608113C>T	uc001rew.2	+	6	663	c.536C>T	c.(535-537)GCT>GTT	p.A179V	PYROXD1_uc009ziq.2_5'UTR|PYROXD1_uc009zir.2_5'UTR	NM_024854	NP_079130	Q8WU10	PYRD1_HUMAN	pyridine nucleotide-disulphide oxidoreductase	179							oxidoreductase activity			ovary(1)	1						AAAGATAAAGCTATAGGGAAT	0.338													5	80					0	0	0.000157383	0	0
GOLT1B	51026	broad.mit.edu	37	12	21665283	21665283	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:21665283C>T	uc001rez.2	+	4	510	c.351C>T	c.(349-351)TCC>TCT	p.S117S	GOLT1B_uc009zis.2_RNA|GOLT1B_uc009zit.2_RNA|GOLT1B_uc009ziu.2_RNA	NM_016072	NP_057156	Q9Y3E0	GOT1B_HUMAN	golgi transport 1 homolog B	117	Cytoplasmic (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport|vesicle-mediated transport	endoplasmic reticulum|Golgi membrane|integral to membrane	signal transducer activity				0						TCCTTGGATCCCTCCTAAATT	0.343													44	208					0	0	0.000781405	0	0
ABCC9	10060	broad.mit.edu	37	12	21997430	21997430	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:21997430T>C	uc001rfi.1	-	26	3322	c.3302A>G	c.(3301-3303)AAT>AGT	p.N1101S	ABCC9_uc001rfh.2_Missense_Mutation_p.N1101S|ABCC9_uc001rfj.1_Missense_Mutation_p.N1065S	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1101	ABC transmembrane type-1 2.|Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATCAATGATATTAGTATCAGC	0.318													20	119					0	0	0.000720815	0	0
ABCC9	10060	broad.mit.edu	37	12	22059147	22059147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:22059147C>T	uc001rfi.1	-	10	1551	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K	ABCC9_uc001rfh.2_Missense_Mutation_p.E511K|ABCC9_uc001rfj.1_Missense_Mutation_p.E511K	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	511	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AAAATGTGTTCCCAGGCATAC	0.333													6	41					0	0	0.00116845	0	0
IPO8	10526	broad.mit.edu	37	12	30829499	30829499	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:30829499A>C	uc001rjd.2	-	6	832	c.662T>G	c.(661-663)GTG>GGG	p.V221G	IPO8_uc010sjt.1_Missense_Mutation_p.V16G	NM_006390	NP_006381	O15397	IPO8_HUMAN	importin 8	221					intracellular protein transport|signal transduction	cytoplasm|nucleus	protein transporter activity|Ran GTPase binding			skin(2)|central_nervous_system(1)	3	all_lung(12;6.66e-10)|Lung NSC(12;4.84e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0355)|Lung SC(12;0.0905)|Esophageal squamous(101;0.233)					TTGGTTATTCACTAGCTGAAG	0.373													3	47					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	12	31300850	31300850	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:31300850G>A	uc010sjy.1	-	11	1410	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		ACTTTACATTGGAATCATCCT	0.423													10	149					0	0	0.000978159	0	0
PKP2	5318	broad.mit.edu	37	12	33031376	33031376	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:33031376C>T	uc001rlj.3	-	3	553	c.438G>A	c.(436-438)AGG>AGA	p.R146R	PKP2_uc001rlk.3_Silent_p.R146R|PKP2_uc010skj.1_Silent_p.R146R	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	146					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TCTCCAGTCTCCTCAGAGGAT	0.577													35	159					0	0	0.000953801	0	0
SYT10	341359	broad.mit.edu	37	12	33559745	33559745	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:33559745T>C	uc001rll.1	-	3	1353	c.1056A>G	c.(1054-1056)AAA>AAG	p.K352K	SYT10_uc009zju.1_Silent_p.K162K	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	352	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					AGTGAATATCTTTCCATACTG	0.343													12	46					0	0	0.00185496	0	0
C12orf40	283461	broad.mit.edu	37	12	40114666	40114666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:40114666G>A	uc001rmc.2	+	13	1739	c.1572G>A	c.(1570-1572)ATG>ATA	p.M524I	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	524										ovary(6)	6						AGGAAAAAATGAATAATTTTT	0.299													7	37					0	0	0.000274275	0	0
LRRK2	120892	broad.mit.edu	37	12	40668764	40668764	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:40668764G>A	uc001rmg.3	+	16	2031	c.1910G>A	c.(1909-1911)CGA>CAA	p.R637Q	LRRK2_uc001rmh.1_Missense_Mutation_p.R259Q	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	637					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AGCTTATACCGATTTAAGGAT	0.363													15	41					0	0	0.00121646	0	0
CNTN1	1272	broad.mit.edu	37	12	41386974	41386974	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:41386974C>T	uc001rmm.1	+	17	2129	c.2016C>T	c.(2014-2016)ATC>ATT	p.I672I	CNTN1_uc001rmn.1_Silent_p.I661I	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	672	Fibronectin type-III 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TGGACTTAATCCCATGGATGG	0.403													14	70					0	0	0.000308642	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43770404	43770404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:43770404G>A	uc010skx.1	-	33	5048	c.5048C>T	c.(5047-5049)ACC>ATC	p.T1683I		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1683	TSP type-1 15.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACCATGTTTGGTAATGCATTT	0.338													10	45					0	0	0.000673444	0	0
VDR	7421	broad.mit.edu	37	12	48249476	48249476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:48249476G>A	uc001rqm.2	-	8	974	c.692C>T	c.(691-693)GCT>GTT	p.A231V	VDR_uc001rql.2_Missense_Mutation_p.A281V|VDR_uc001rqn.2_Missense_Mutation_p.A231V|VDR_uc010slq.1_Missense_Mutation_p.A199V	NM_001017535	NP_001017535	P11473	VDR_HUMAN	vitamin D (1,25-dihydroxyvitamin D3) receptor	231	Ligand-binding.|Vitamin D3 binding.				decidualization|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D 24-hydroxylase activity|regulation of calcidiol 1-monooxygenase activity|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid X receptor binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|vitamin D3 receptor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Acute lymphoblastic leukemia(13;0.109)|all_hematologic(14;0.214)		GBM - Glioblastoma multiforme(48;0.17)	Calcidiol(DB00146)|Calcipotriol(DB02300)|Calcitriol(DB00136)|Dihydrotachysterol(DB01070)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	GACCAGGTCAGCCAGGTGGGG	0.502													11	48					0	0	0.00185496	0	0
COL2A1	1280	broad.mit.edu	37	12	48372487	48372487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:48372487C>T	uc001rqu.2	-	42	2969	c.2788G>A	c.(2788-2790)GGT>AGT	p.G930S	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.G861S	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	930	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	CCTCGAGCACCTTTGGGACCA	0.632													7	37					0	0	0.000157383	0	0
TUBA1C	84790	broad.mit.edu	37	12	49666051	49666051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:49666051G>A	uc001rtt.1	+	4	491	c.391G>A	c.(391-393)GGT>AGT	p.G131S	TUBA1C_uc001rts.2_Missense_Mutation_p.G96S|TUBA1C_uc010smh.1_Missense_Mutation_p.G201S|uc010smi.1_3'UTR	NM_032704	NP_116093	Q9BQE3	TBA1C_HUMAN	tubulin alpha 6	131					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0						CCAGTGCACCGGTCTTCAGGG	0.443													11	71					0	0	0.000308642	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50189926	50189926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:50189926C>T	uc009zlk.2	-	8	1919	c.1717G>A	c.(1717-1719)GAG>AAG	p.E573K	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_Missense_Mutation_p.E166K	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	569	Pro-rich.									central_nervous_system(1)	1						GGAGGTGGCTCTGGGGAAGGC	0.622													4	24					0	0	0.00116845	0	0
SLC4A8	9498	broad.mit.edu	37	12	51853762	51853762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:51853762C>T	uc001rys.1	+	8	1061	c.883C>T	c.(883-885)CCT>TCT	p.P295S	SLC4A8_uc010sni.1_Missense_Mutation_p.P242S|SLC4A8_uc001rym.2_Missense_Mutation_p.P242S|SLC4A8_uc001ryn.2_Missense_Mutation_p.P242S|SLC4A8_uc001ryo.2_Missense_Mutation_p.P242S|SLC4A8_uc001ryp.1_Missense_Mutation_p.P242S|SLC4A8_uc010snj.1_Missense_Mutation_p.P322S|SLC4A8_uc001ryq.3_Missense_Mutation_p.P295S|SLC4A8_uc001ryr.2_Missense_Mutation_p.P295S|SLC4A8_uc010snk.1_Missense_Mutation_p.P242S	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	295	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GAAAAAAATTCCTACTGGGGC	0.423													20	118					0	0	0.00188189	0	0
KRT83	3889	broad.mit.edu	37	12	52709720	52709720	+	Missense_Mutation	SNP	C	T	T	rs57802288		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:52709720C>T	uc001saf.2	-	7	1282	c.1219G>A	c.(1219-1221)GAG>AAG	p.E407K		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	407	Rod.|Coil 2.		E -> K (in MLTRX).		epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GTGGCGATCTCGATATCCAGG	0.607													11	46					0	0	0.00185496	0	0
KRT2	3849	broad.mit.edu	37	12	53044161	53044161	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:53044161C>T	uc001sat.2	-	2	795	c.762G>A	c.(760-762)CTG>CTA	p.L254L		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	254	Coil 1B.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		GCATGTTATTCAGCTCTGAAT	0.473													23	100					0	0	0.000720815	0	0
KRT77	374454	broad.mit.edu	37	12	53096993	53096993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:53096993C>T	uc001saw.2	-	1	255	c.226G>A	c.(226-228)GGG>AGG	p.G76R	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	76	Head.					keratin filament	structural molecule activity			ovary(1)	1						GTGCTCCTCCCCATTAGATTA	0.587													4	15					0	0	0.00024832	0	0
KRT76	51350	broad.mit.edu	37	12	53167422	53167422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:53167422C>T	uc001sax.2	-	3	874	c.820G>A	c.(820-822)GAA>AAA	p.E274K		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	274	Coil 1B.|Rod.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						ATTTCATCTTCATACCTGGAA	0.483													11	33					0	0	0.000978159	0	0
KRT18	3875	broad.mit.edu	37	12	53345291	53345291	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:53345291T>G	uc001sbe.2	+	5	753	c.684T>G	c.(682-684)ATT>ATG	p.I228M	KRT18_uc009zmn.1_Missense_Mutation_p.I228M|KRT18_uc001sbf.1_Missense_Mutation_p.I55M|KRT18_uc001sbg.2_Missense_Mutation_p.I228M|KRT18_uc009zmo.2_Missense_Mutation_p.I228M|KRT8_uc009zml.1_5'Flank|KRT8_uc009zmm.1_5'Flank	NM_199187	NP_954657	P05783	K1C18_HUMAN	keratin 18	228	Linker 12.|Rod.|Necessary for interaction with PNN.				anatomical structure morphogenesis|cell cycle|Golgi to plasma membrane CFTR protein transport|interspecies interaction between organisms|negative regulation of apoptosis	centriolar satellite|keratin filament|perinuclear region of cytoplasm	protein binding|structural molecule activity			skin(1)	1						AAGCCCAGATTGCCAGCTCTG	0.552													11	39					0	0	0.00185496	0	0
ITGB7	3695	broad.mit.edu	37	12	53589888	53589888	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:53589888G>A	uc009zmv.2	-	6	983	c.912C>T	c.(910-912)TTC>TTT	p.F304F	ITGB7_uc001scc.2_Silent_p.F304F|ITGB7_uc010snz.1_RNA	NM_000889	NP_000880	P26010	ITB7_HUMAN	integrin, beta 7 precursor	304	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|multicellular organismal development|regulation of immune response	integrin complex	identical protein binding|metal ion binding|receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|breast(1)	8						CACTGGGCATGAAAATGCCGC	0.552													19	41					0	0	0.00188189	0	0
ITGA5	3678	broad.mit.edu	37	12	54797454	54797454	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:54797454C>T	uc001sga.2	-	17	1799	c.1731G>A	c.(1729-1731)CAG>CAA	p.Q577Q		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	577	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						GAGCCCCATTCTGGATGAGCA	0.617													16	47					0	0	0.00121646	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54929986	54929986	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:54929986C>T	uc001sgc.3	+	28	3109	c.3030C>T	c.(3028-3030)CTC>CTT	p.L1010L	NCKAP1L_uc010sox.1_Silent_p.L552L|NCKAP1L_uc010soy.1_Silent_p.L960L	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1010	Helical; (Potential).				actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CCCTCCCACTCCTTGCCACTG	0.478													5	41					0	0	0.00116845	0	0
NEUROD4	58158	broad.mit.edu	37	12	55420974	55420974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:55420974G>A	uc001sgp.3	+	2	1129	c.751G>A	c.(751-753)GGC>AGC	p.G251S		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	251					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						CCCTTATGAGGGCCCACTCAC	0.512													5	14					0	0	0.000602214	0	0
OR6C70	390327	broad.mit.edu	37	12	55863179	55863179	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:55863179G>A	uc010spn.1	-	1	744	c.744C>T	c.(742-744)ATC>ATT	p.I248I		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TACCATAAGTGATGGAGACAA	0.398													13	75					0	0	0.000308642	0	0
OR6C4	341418	broad.mit.edu	37	12	55945720	55945720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:55945720C>T	uc010spp.1	+	1	710	c.710C>T	c.(709-711)TCC>TTC	p.S237F		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	237	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGGCCTTTTCCACTTGTTCC	0.438													7	40					0	0	0.000274275	0	0
WIBG	84305	broad.mit.edu	37	12	56297254	56297254	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:56297254G>A	uc001sif.1	-	2	200	c.48C>T	c.(46-48)ATC>ATT	p.I16I	WIBG_uc001sie.1_Silent_p.I15I	NM_032345	NP_115721	Q9BRP8	WIBG_HUMAN	within bgcn homolog isoform 1	16	Required for interaction with MAGOH and RBM8A.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of translation	cytoplasm|exon-exon junction complex|nucleolus|nucleoplasm	protein binding|ribosome binding|RNA binding				0						GTGTTGACGCGATATACTTGC	0.428													14	63					0	0	0.000422831	0	0
DGKA	1606	broad.mit.edu	37	12	56346858	56346858	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:56346858G>A	uc001sij.2	+	22	2241	c.1977G>A	c.(1975-1977)CTG>CTA	p.L659L	DGKA_uc001sik.2_Silent_p.L659L|DGKA_uc001sil.2_Silent_p.L659L|DGKA_uc001sim.2_Silent_p.L659L|DGKA_uc001sin.2_Silent_p.L659L|DGKA_uc009zof.2_Silent_p.L305L|DGKA_uc001sio.2_Silent_p.L401L	NM_001345	NP_001336	P23743	DGKA_HUMAN	diacylglycerol kinase, alpha 80kDa	659					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity			ovary(3)|pancreas(1)	4					Vitamin E(DB00163)	TGGTTGGGCTGGAGGGTGCAA	0.502													15	62					0	0	0.000422831	0	0
MIP	4284	broad.mit.edu	37	12	56848193	56848193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:56848193G>A	uc001slh.2	-	1	237	c.205C>T	c.(205-207)CCT>TCT	p.P69S		NM_012064	NP_036196	P30301	MIP_HUMAN	major intrinsic protein of lens fiber	69	NPA 1.				response to stimulus|visual perception	gap junction|integral to plasma membrane	structural constituent of eye lens			skin(1)	1						GTGACTGCAGGATTGACGTGG	0.607													16	28					0	0	0.00074312	0	0
MYO1A	4640	broad.mit.edu	37	12	57431350	57431350	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:57431350G>A	uc001smw.3	-	19	2280	c.2037C>T	c.(2035-2037)TTC>TTT	p.F679F	MYO1A_uc010sqz.1_Silent_p.F517F|MYO1A_uc009zpd.2_Silent_p.F679F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	679	Myosin head-like.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						GGCTTCTAATGAAGATCTTTG	0.537													37	179					0	0	0.000680045	0	0
LRP1	4035	broad.mit.edu	37	12	57574144	57574144	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:57574144C>T	uc001snd.2	+	32	5734	c.5268C>T	c.(5266-5268)CTC>CTT	p.L1756L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1756	Extracellular (Potential).|LDL-receptor class B 16.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	AAAGCAAACTCTACTGGATCA	0.612													18	131					0	0	0.000958276	0	0
TSFM	10102	broad.mit.edu	37	12	58180876	58180876	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:58180876C>T	uc001sqi.2	+	4	463	c.414C>T	c.(412-414)GTC>GTT	p.V138V	TSFM_uc010sse.1_Silent_p.V98V|TSFM_uc001sqh.2_Silent_p.V138V|TSFM_uc010ssf.1_Silent_p.V138V	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial	138					regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					AACTGTTGGTCCAGCAAGTAG	0.378													4	22					0	0	0.000602214	0	0
Unknown	0	broad.mit.edu	37	12	63359156	63359156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:63359156G>A	uc001srn.1	+	1	57	c.52G>A	c.(52-54)GGA>AGA	p.G18R						SubName: Full=Putative uncharacterized protein RPL14P1;																		TGTCTCCTTTGGACCTCATGC	0.507													11	57					0	0	0.00136819	0	0
RAB3IP	117177	broad.mit.edu	37	12	70206574	70206574	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:70206574G>A	uc001svp.2	+	9	1642	c.1195G>A	c.(1195-1197)GGC>AGC	p.G399S	RAB3IP_uc001svm.2_Missense_Mutation_p.G383S|RAB3IP_uc001svn.2_Intron|RAB3IP_uc001svo.2_RNA|RAB3IP_uc001svq.2_Intron|RAB3IP_uc001svr.2_Intron|RAB3IP_uc001svs.2_RNA|RAB3IP_uc001svt.2_Missense_Mutation_p.G177S	NM_175623	NP_783322	Q96QF0	RAB3I_HUMAN	RAB3A interacting protein isoform alpha 2	399					cilium assembly|Golgi to plasma membrane transport|protein localization to organelle|protein transport	actin cortical patch|centrosome|cytosol|lamellipodium|microtubule basal body|nucleus	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1	Esophageal squamous(21;0.187)		Lung(24;0.000381)|OV - Ovarian serous cystadenocarcinoma(12;0.00168)|STAD - Stomach adenocarcinoma(21;0.00694)			TGCTCTCACTGGCCAGAGTAA	0.333													8	37					0	0	0.000442599	0	0
TPH2	121278	broad.mit.edu	37	12	72335394	72335394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:72335394G>A	uc009zrw.1	+	2	277	c.136G>A	c.(136-138)GAC>AAC	p.D46N	TPH2_uc001swy.2_5'UTR	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	46					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	CAAAAATGACGACAAAGGCAA	0.393													8	25					0	0	0.000274275	0	0
PPFIA2	8499	broad.mit.edu	37	12	81746930	81746930	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:81746930C>T	uc001szo.1	-	17	2123	c.1962G>A	c.(1960-1962)CAG>CAA	p.Q654Q	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	580										ovary(3)|lung(2)|pancreas(1)	6						CCAATTGTTCCTGAAGCATCA	0.358													10	65					0	0	0.000978159	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373975	86373975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:86373975C>T	uc001tai.3	-	8	1779	c.529G>A	c.(529-531)GAG>AAG	p.E177K	MGAT4C_uc001tal.3_Missense_Mutation_p.E177K|MGAT4C_uc001taj.3_Missense_Mutation_p.E177K|MGAT4C_uc001tak.3_Missense_Mutation_p.E177K|MGAT4C_uc010sum.1_Missense_Mutation_p.E201K|MGAT4C_uc001tah.3_Missense_Mutation_p.E177K	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	177	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						GGGTAATACTCCTCTGGAGCA	0.378													16	59					0	0	0.000958276	0	0
C12orf50	160419	broad.mit.edu	37	12	88391963	88391963	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:88391963G>A	uc001tam.1	-	4	306	c.138C>T	c.(136-138)ATC>ATT	p.I46I	C12orf50_uc001tan.2_Silent_p.I100I	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	46										skin(2)|ovary(1)	3						TCTGTAGTGTGATATCTGCAG	0.373													5	22					0	0	0.00198382	0	0
LUM	4060	broad.mit.edu	37	12	91502140	91502140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:91502140G>A	uc001tbm.2	-	2	1006	c.617C>T	c.(616-618)TCT>TTT	p.S206F	LUM_uc001tbn.2_Intron	NM_002345	NP_002336	P51884	LUM_HUMAN	lumican precursor	206	LRR 7.				collagen fibril organization|visual perception	extracellular space|fibrillar collagen	collagen binding|extracellular matrix structural constituent			central_nervous_system(2)	2						AGTTAGAAGAGAGACAGGGAG	0.413													9	64					0	0	0.000673444	0	0
DCN	1634	broad.mit.edu	37	12	91572192	91572192	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:91572192G>A	uc001tbs.2	-	1	232	c.138C>T	c.(136-138)TTC>TTT	p.F46F	DCN_uc001tbo.2_Silent_p.F46F|DCN_uc001tbp.2_Silent_p.F46F|DCN_uc001tbq.2_Silent_p.F46F|DCN_uc001tbr.2_Silent_p.F46F|DCN_uc001tbt.2_Silent_p.F46F|DCN_uc001tbu.2_Silent_p.F46F	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	46					organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						GGGAGGGCTCGAAGTCGCGGT	0.527											OREG0022021	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	29					0	0	0.000602214	0	0
NTN4	59277	broad.mit.edu	37	12	96104296	96104296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:96104296C>T	uc001tei.2	-	5	1552	c.1103G>A	c.(1102-1104)GGA>GAA	p.G368E	NTN4_uc009ztf.2_Missense_Mutation_p.G368E|NTN4_uc009ztg.2_Missense_Mutation_p.G331E	NM_021229	NP_067052	Q9HB63	NET4_HUMAN	netrin 4 precursor	368	Laminin EGF-like 2.				axon guidance	basement membrane|plasma membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GCAATACTGTCCTTCTGTGTT	0.512													5	46					0	0	0.000602214	0	0
MYBPC1	4604	broad.mit.edu	37	12	102045123	102045123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:102045123G>A	uc001tii.2	+	14	1505	c.1403G>A	c.(1402-1404)GGC>GAC	p.G468D	MYBPC1_uc001tif.1_Missense_Mutation_p.G481D|MYBPC1_uc001tig.2_Missense_Mutation_p.G493D|MYBPC1_uc010svq.1_Missense_Mutation_p.G455D|MYBPC1_uc001tih.2_Missense_Mutation_p.G493D|MYBPC1_uc001tij.2_Missense_Mutation_p.G468D|MYBPC1_uc010svr.1_Missense_Mutation_p.G468D|MYBPC1_uc010svs.1_Missense_Mutation_p.G468D|MYBPC1_uc010svt.1_Missense_Mutation_p.G456D|MYBPC1_uc010svu.1_Missense_Mutation_p.G449D|MYBPC1_uc001tik.2_Missense_Mutation_p.G442D	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	468	Ig-like C2-type 4.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						ACTAAAAATGGCCTACCTGTT	0.443													19	121					0	0	0.000586117	0	0
GNPTAB	79158	broad.mit.edu	37	12	102163906	102163906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:102163906G>A	uc001tit.2	-	10	1356	c.1177C>T	c.(1177-1179)CAT>TAT	p.H393Y	GNPTAB_uc001tiu.1_Missense_Mutation_p.H393Y	NM_024312	NP_077288	Q3T906	GNPTA_HUMAN	N-acetylglucosamine-1-phosphate transferase	393					cell differentiation	Golgi membrane|integral to membrane|nucleus	metal ion binding|transcription factor binding|UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity			ovary(1)|skin(1)	2						TCGATGCGATGAATGTGACTT	0.388													44	145					0	0	0.000781405	0	0
IGF1	3479	broad.mit.edu	37	12	102811655	102811655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:102811655C>T	uc001tjp.3	-	4	748	c.529G>A	c.(529-531)GAG>AAG	p.E177K	IGF1_uc001tjn.2_Intron|IGF1_uc001tjm.2_Intron|IGF1_uc001tjo.2_Intron	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	177					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						CTCCTCTGCTCTTTCTTCTTT	0.473													59	293					0	0	0.000781405	0	0
TCP11L2	255394	broad.mit.edu	37	12	106717399	106717399	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:106717399C>T	uc001tln.2	+	6	921	c.747C>T	c.(745-747)TTC>TTT	p.F249F	TCP11L2_uc001tll.2_Silent_p.F249F|TCP11L2_uc001tlm.2_Silent_p.F249F	NM_152772	NP_689985	Q8N4U5	T11L2_HUMAN	t-complex 11 (mouse) like 2	249										ovary(3)	3						GAACCAAGTTCCAGGAAATTT	0.328													38	162					0	0	0.000781405	0	0
BTBD11	121551	broad.mit.edu	37	12	108045516	108045516	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:108045516G>A	uc001tmk.1	+	16	3578	c.3057G>A	c.(3055-3057)GCG>GCA	p.A1019A	BTBD11_uc001tml.1_Silent_p.A556A|BTBD11_uc001tmm.1_Silent_p.A98A	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	1019						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TTATCTGTGCGAAAAGCATCA	0.483													8	62					0	0	0.000442599	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686417	108686417	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:108686417C>T	uc009zuw.2	-	3	514	c.323G>A	c.(322-324)GGG>GAG	p.G108E	CMKLR1_uc001tmw.2_Missense_Mutation_p.G108E|CMKLR1_uc001tmv.2_Missense_Mutation_p.G106E|CMKLR1_uc009zuv.2_Missense_Mutation_p.G108E	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	108	Extracellular (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity	p.A108A(1)		lung(3)|ovary(1)|pancreas(1)	5						CATGGCTGTCCCGAAAACCCA	0.522													5	46					0	0	0.00116845	0	0
CUX2	23316	broad.mit.edu	37	12	111786014	111786014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:111786014C>T	uc001tsa.1	+	22	4499	c.4346C>T	c.(4345-4347)GCC>GTC	p.A1449V		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1449						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CACCCCAGTGCCAAGGTGAAC	0.627													14	76					0	0	0.000308642	0	0
RPH3A	22895	broad.mit.edu	37	12	113319643	113319643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:113319643G>A	uc010syl.1	+	15	1680	c.1318G>A	c.(1318-1320)GCC>ACC	p.A440T	RPH3A_uc001ttz.2_Missense_Mutation_p.A440T|RPH3A_uc001tty.2_Missense_Mutation_p.A436T|RPH3A_uc009zwe.1_Missense_Mutation_p.A436T|RPH3A_uc010sym.1_Missense_Mutation_p.A391T|RPH3A_uc001tua.2_Missense_Mutation_p.A200T	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	440	C2 1.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		CCTGCCGGGAGCCAGCAAGGT	0.582													8	40					0	0	0.000673444	0	0
NOS1	4842	broad.mit.edu	37	12	117768203	117768203	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:117768203C>T	uc001twm.1	-	2	1358	c.672G>A	c.(670-672)AAG>AAA	p.K224K		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	224	PIN (nNOS-inhibiting protein) binding.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GTGCCCCTCCCTTGACCCCTC	0.478													23	75					0	0	0.000720815	0	0
NOS1	4842	broad.mit.edu	37	12	117768363	117768363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:117768363G>A	uc001twm.1	-	2	1198	c.512C>T	c.(511-513)TCA>TTA	p.S171L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	171	Interaction with NOSIP (By similarity).|PIN (nNOS-inhibiting protein) binding.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATGGGGGAGTGAGCCAGCCTC	0.667													8	38					0	0	0.000274275	0	0
NOS1	4842	broad.mit.edu	37	12	117768817	117768817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:117768817G>A	uc001twm.1	-	2	744	c.58C>T	c.(58-60)CTC>TTC	p.L20F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	20	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CGCTTGAAGAGACGAACAGAA	0.547													12	49					0	0	0.000308642	0	0
CIT	11113	broad.mit.edu	37	12	120221755	120221755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:120221755G>A	uc001txi.1	-	12	1555	c.1502C>T	c.(1501-1503)TCC>TTC	p.S501F	CIT_uc001txh.1_Missense_Mutation_p.S35F|CIT_uc001txj.1_Missense_Mutation_p.S501F	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	501	Potential.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CTCCAGGAGGGATCTCTGAGT	0.557													24	101					0	0	0.000878237	0	0
MLEC	9761	broad.mit.edu	37	12	121132064	121132064	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:121132064C>A	uc001tyy.1	+	2	557	c.406C>A	c.(406-408)CAG>AAG	p.Q136K		NM_014730	NP_055545	Q14165	MLEC_HUMAN	malectin precursor	136	Lumenal (Potential).				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	carbohydrate binding			ovary(1)	1						TGCACAGTCCCAGCAAAAGGT	0.522													11	113					0.000978159	0.00389665	0.000978159	1	0
LRRC43	254050	broad.mit.edu	37	12	122685421	122685421	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:122685421C>T	uc009zxm.2	+	10	1774	c.1749C>T	c.(1747-1749)TCC>TCT	p.S583S	LRRC43_uc001ubw.3_Silent_p.S398S|LRRC43_uc009zxn.2_Silent_p.S344S|B3GNT4_uc001ubx.2_5'Flank|B3GNT4_uc001uby.2_5'Flank	NM_001098519	NP_001091989	Q8N309	LRC43_HUMAN	leucine rich repeat containing 43 isoform 1	583											0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000312)|Epithelial(86;0.000539)|BRCA - Breast invasive adenocarcinoma(302;0.225)		CCCTGGTGTCCACCGTGTGCA	0.687													5	34					0	0	0.00116845	0	0
GPR109B	8843	broad.mit.edu	37	12	123200397	123200397	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:123200397G>A	uc001ucy.3	-	1	1043	c.888C>T	c.(886-888)TTC>TTT	p.F296F	GPR81_uc001ucw.1_Intron	NM_006018	NP_006009	P49019	HCAR3_HUMAN	G protein-coupled receptor 109B	296	Helical; Name=7; (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.12e-05)|Epithelial(86;3.19e-05)|BRCA - Breast invasive adenocarcinoma(302;0.196)	Mepenzolate(DB04843)|Niacin(DB00627)	ATGGGCTGGAGAAGTAGTACA	0.527													8	15					0	0	0.000157383	0	0
DNAH10	196385	broad.mit.edu	37	12	124265846	124265846	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:124265846G>A	uc001uft.3	+	6	683	c.658G>A	c.(658-660)GGT>AGT	p.G220S		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	220	Stem (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GCAACTTGAAGGTAAGGTTTC	0.229													8	65					0	0	0.000442599	0	0
ZNF664	144348	broad.mit.edu	37	12	124497312	124497312	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:124497312C>T	uc001ufz.2	+	6	2451	c.621C>T	c.(619-621)GCC>GCT	p.A207A	ZNF664_uc001uga.2_Silent_p.A207A|ZNF664_uc001ugb.2_Silent_p.A207A	NM_152437	NP_689650	Q8N3J9	ZN664_HUMAN	zinc finger protein 664	207	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.000239)|OV - Ovarian serous cystadenocarcinoma(86;0.000247)|all cancers(50;0.00155)|BRCA - Breast invasive adenocarcinoma(302;0.249)		GTGGGAAGGCCTTCAGTCAGA	0.517													11	48					0	0	0.000978159	0	0
DHX37	57647	broad.mit.edu	37	12	125461959	125461959	+	Silent	SNP	G	A	A	rs149069975		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:125461959G>A	uc001ugy.2	-	5	915	c.816C>T	c.(814-816)ATC>ATT	p.I272I		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	272	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		CACCACACACGATGACGATGG	0.572													6	49					0	0	0.00116845	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834439	125834439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:125834439C>T	uc001uhe.1	+	2	502	c.494C>T	c.(493-495)CCT>CTT	p.P165L		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	165	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TTTGCTTTCCCTGAGGCCAGG	0.582													6	71					0	0	0.00198382	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138111	126138111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:126138111G>A	uc001uhe.1	+	9	2100	c.2092G>A	c.(2092-2094)GAA>AAA	p.E698K	TMEM132B_uc001uhf.1_Missense_Mutation_p.E210K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	698	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TTTTCCTCAGGAAGCAATAGT	0.313													16	97					0	0	0.000422831	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559502	129559502	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:129559502C>T	uc009zyl.1	-	9	2546	c.2218G>A	c.(2218-2220)GAG>AAG	p.E740K	TMEM132D_uc001uia.2_Missense_Mutation_p.E278K	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	740	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		ACTACCTTCTCATCCAAAGAT	0.498													10	60					0	0	0.000442599	0	0
PIWIL1	9271	broad.mit.edu	37	12	130841563	130841563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:130841563G>A	uc001uik.2	+	13	1595	c.1505G>A	c.(1504-1506)CGA>CAA	p.R502Q	PIWIL1_uc001uij.1_Missense_Mutation_p.R502Q	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	502					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		ATCTATACGCGAAGAAATTAT	0.348													7	40					0	0	0.00198382	0	0
RIMBP2	23504	broad.mit.edu	37	12	130892332	130892332	+	Missense_Mutation	SNP	C	T	T	rs147944919		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:130892332C>T	uc001uil.2	-	16	3028	c.2864G>A	c.(2863-2865)CGG>CAG	p.R955Q		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	955	SH3 3.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CACCATTCTCCGCGTCGATAC	0.517													15	71					0	0	0.000308642	0	0
RIMBP2	23504	broad.mit.edu	37	12	130941052	130941052	+	Missense_Mutation	SNP	G	A	A	rs147862372		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr12:130941052G>A	uc001uil.2	-	4	460	c.296C>T	c.(295-297)TCC>TTC	p.S99F	RIMBP2_uc001uim.2_Missense_Mutation_p.S7F	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	99						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		TTTGCCGAGGGAGGTGGCTAG	0.632													5	33					0	0	0.000157383	0	0
GJB6	10804	broad.mit.edu	37	13	20796929	20796929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:20796929G>A	uc001umz.3	-	3	1244	c.691C>T	c.(691-693)CAC>TAC	p.H231Y	GJB6_uc001unc.3_Missense_Mutation_p.H231Y|GJB6_uc001una.3_Missense_Mutation_p.H231Y|GJB6_uc001und.3_Missense_Mutation_p.H231Y|GJB6_uc001unb.3_Missense_Mutation_p.H231Y	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	231	Cytoplasmic (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		TGATTGGGGTGATTTTTTTGC	0.428													18	89					0	0	0.00074312	0	0
SACS	26278	broad.mit.edu	37	13	23906653	23906653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:23906653G>A	uc001uon.2	-	10	11951	c.11362C>T	c.(11362-11364)CGT>TGT	p.R3788C	SACS_uc001uoo.2_Missense_Mutation_p.R3641C|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	3788					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AACTGAAAACGAAATTCCCTT	0.383													10	58					0	0	0.000978159	0	0
SACS	26278	broad.mit.edu	37	13	23913632	23913632	+	Silent	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:23913632A>C	uc001uon.2	-	10	4972	c.4383T>G	c.(4381-4383)ACT>ACG	p.T1461T	SACS_uc001uoo.2_Silent_p.T1314T|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1461					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TAATTCTTACAGTAAGTGGCT	0.363													7	100					0	0	0.00198382	0	0
ATP12A	479	broad.mit.edu	37	13	25264590	25264590	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:25264590C>T	uc001upp.2	+	6	848	c.661C>T	c.(661-663)CTG>TTG	p.L221L	ATP12A_uc010aaa.2_Silent_p.L221L	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	221	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CATCAGGGTGCTGTCTTCTCA	0.567													11	32					0	0	0.00136819	0	0
RNF17	56163	broad.mit.edu	37	13	25362210	25362210	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:25362210G>A	uc001upr.2	+	7	737	c.696G>A	c.(694-696)GAG>GAA	p.E232E	RNF17_uc010tdd.1_Silent_p.E91E|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.E232E|RNF17_uc001ups.2_Silent_p.E171E|RNF17_uc001upq.1_Silent_p.E232E	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	232					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ACATTGAAGAGAAAAAAAATA	0.308													19	94					0	0	0.00152264	0	0
RNF17	56163	broad.mit.edu	37	13	25399799	25399799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:25399799G>A	uc001upr.2	+	16	2175	c.2134G>A	c.(2134-2136)GAA>AAA	p.E712K	RNF17_uc010tdd.1_Missense_Mutation_p.E571K|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.E712K|RNF17_uc001ups.2_Missense_Mutation_p.E651K	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	712					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GACAATCGAGGAATTCTATAA	0.353													21	87					0	0	0.00152264	0	0
RNF17	56163	broad.mit.edu	37	13	25451149	25451149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:25451149C>T	uc001upr.2	+	34	4639	c.4598C>T	c.(4597-4599)CCT>CTT	p.P1533L	RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.P1529L|RNF17_uc001ups.2_Missense_Mutation_p.P1472L|RNF17_uc010aac.2_Missense_Mutation_p.P725L|RNF17_uc010aad.2_Missense_Mutation_p.P543L	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1533	Tudor 4.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TGCCAAATTCCTTCTCATCTT	0.323													7	118					0	0	0.000274275	0	0
MTMR6	9107	broad.mit.edu	37	13	25826016	25826016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:25826016G>A	uc001uqf.3	-	12	1772	c.1453C>T	c.(1453-1455)CCA>TCA	p.P485S	MTMR6_uc001uqe.1_Missense_Mutation_p.P485S	NM_004685	NP_004676	Q9Y217	MTMR6_HUMAN	myotubularin related protein 6	485	Myotubularin phosphatase.					cytoplasm|nuclear envelope	calcium-activated potassium channel activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			ovary(2)|skin(2)	4		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.00927)|Epithelial(112;0.0474)|OV - Ovarian serous cystadenocarcinoma(117;0.164)		ACTGTATTTGGCTCCAAAACT	0.318													29	272					0	0	0.00209593	0	0
ATP8A2	51761	broad.mit.edu	37	13	26145762	26145762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:26145762G>A	uc001uqk.2	+	18	1736	c.1594G>A	c.(1594-1596)GTG>ATG	p.V532M	ATP8A2_uc010tdi.1_Missense_Mutation_p.V492M|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Missense_Mutation_p.V42M|ATP8A2_uc001uql.1_Missense_Mutation_p.V492M	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	492	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		AGCTGCTTTGGTGAAAGGAGC	0.413													10	78					0	0	0.000673444	0	0
RASL11A	387496	broad.mit.edu	37	13	27847599	27847599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:27847599C>T	uc001urd.1	+	4	1315	c.697C>T	c.(697-699)CCC>TCC	p.P233S		NM_206827	NP_996563	Q6T310	RSLBA_HUMAN	RAS-like, family 11, member A	233	Small GTPase-like.				positive regulation of transcription from RNA polymerase I promoter|small GTPase mediated signal transduction|transcription, DNA-dependent	membrane|nucleolus	GTP binding|GTPase activity			breast(1)	1		Lung SC(185;0.0161)	Colorectal(13;0.00042)|READ - Rectum adenocarcinoma(15;0.105)	all cancers(112;0.0173)|GBM - Glioblastoma multiforme(144;0.0557)|OV - Ovarian serous cystadenocarcinoma(117;0.152)|Epithelial(112;0.164)		GGCTCTGTCTCCCAAAGTCAA	0.547													6	28					0	0	0.00198382	0	0
LNX2	222484	broad.mit.edu	37	13	28141846	28141846	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:28141846G>A	uc001url.3	-	4	1095	c.786C>T	c.(784-786)ATC>ATT	p.I262I	LNX2_uc001urm.1_Silent_p.I262I	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	262	PDZ 1.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		AGACCTCCTGGATGACAATGT	0.433													9	51					0	0	0.000673444	0	0
FLT3	2322	broad.mit.edu	37	13	28601286	28601286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:28601286C>T	uc001urw.2	-	17	2228	c.2146G>A	c.(2146-2148)GAG>AAG	p.E716K	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.E716K	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	716	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TTGAAAATCTCTGTCCAAGTC	0.358			Mis|O		AML|ALL								6	126					0	0	0.00116845	0	0
FLT3	2322	broad.mit.edu	37	13	28608116	28608116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:28608116C>T	uc001urw.2	-	15	1932	c.1850G>A	c.(1849-1851)GGA>GAA	p.G617E	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.G617E	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	617	Protein kinase.|ATP (By similarity).|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity	p.G617_S618ins21(1)		haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	AGCACCTGATCCTAGTACCTT	0.403			Mis|O		AML|ALL								20	129					0	0	0.00152264	0	0
FLT1	2321	broad.mit.edu	37	13	29008292	29008292	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:29008292G>A	uc001usb.3	-	5	864	c.579C>T	c.(577-579)ATC>ATT	p.I193I	FLT1_uc010aar.1_Silent_p.I193I|FLT1_uc001usc.3_Silent_p.I193I|FLT1_uc010tdp.1_Silent_p.I193I	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	193	Ig-like C2-type 2.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	CATTTGATATGATGAAGCCCT	0.408													11	49					0	0	0.00136819	0	0
KL	9365	broad.mit.edu	37	13	33635284	33635284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:33635284C>T	uc001uus.2	+	4	2076	c.2068C>T	c.(2068-2070)CCG>TCG	p.P690S	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	690	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		GATGAATGAGCCGTATACAAG	0.507													15	46					0	0	0.000308642	0	0
NBEA	26960	broad.mit.edu	37	13	35615209	35615209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:35615209G>A	uc001uvb.2	+	3	640	c.434G>A	c.(433-435)CGA>CAA	p.R145Q		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	145						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCCATTCTACGAAAAAGTGTT	0.408													9	49					0	0	0.000274275	0	0
NBEA	26960	broad.mit.edu	37	13	35716467	35716467	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:35716467T>C	uc001uvb.2	+	19	2604	c.2398T>C	c.(2398-2400)TTG>CTG	p.L800L		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	800						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		AAGGCTGATGTTGCATACAAA	0.328													9	188					0	0	0.00136819	0	0
NBEA	26960	broad.mit.edu	37	13	36167502	36167502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:36167502G>A	uc001uvb.2	+	47	7420	c.7214G>A	c.(7213-7215)GGA>GAA	p.G2405E	NBEA_uc010abi.2_Missense_Mutation_p.G1061E|NBEA_uc010tee.1_Missense_Mutation_p.G198E|NBEA_uc010tef.1_Missense_Mutation_p.G198E|NBEA_uc010teg.1_Missense_Mutation_p.G198E|NBEA_uc001uvd.2_5'UTR	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2405	BEACH.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCAAATGATGGAAAATTTGAT	0.398													5	63					0	0	0.00116845	0	0
DCLK1	9201	broad.mit.edu	37	13	36385035	36385035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:36385035C>T	uc001uvf.2	-	12	1858	c.1625G>A	c.(1624-1626)GGC>GAC	p.G542D	DCLK1_uc001uve.3_Missense_Mutation_p.G235D|DCLK1_uc010teh.1_Missense_Mutation_p.G235D|DCLK1_uc010abk.2_Missense_Mutation_p.G62D	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	542	Protein kinase.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		GTACAGGGGGCCGTCTACAAT	0.463													10	101					0	0	0.000978159	0	0
SPG20	23111	broad.mit.edu	37	13	36909172	36909172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:36909172G>A	uc001uvn.2	-	3	1066	c.796C>T	c.(796-798)CCC>TCC	p.P266S	SPG20_uc010ten.1_Missense_Mutation_p.P266S|SPG20_uc001uvm.2_Missense_Mutation_p.P266S|SPG20_uc001uvo.2_Missense_Mutation_p.P266S|SPG20_uc001uvq.2_Missense_Mutation_p.P266S|SPG20_uc001uvp.2_Missense_Mutation_p.P266S	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	266					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		AGAAACCCGGGAGGACGGTTT	0.388													9	109					0	0	0.00136819	0	0
FREM2	341640	broad.mit.edu	37	13	39358792	39358792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:39358792G>A	uc001uwv.2	+	6	6175	c.5866G>A	c.(5866-5868)GAA>AAA	p.E1956K	FREM2_uc001uww.2_Missense_Mutation_p.E42K	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	1956	Extracellular (Potential).|Calx-beta 2.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		TGACAAAGATGAACGGGAGAA	0.488													9	44					0	0	0.000673444	0	0
KIAA0564	23078	broad.mit.edu	37	13	42161771	42161771	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:42161771G>A	uc001uyj.2	-	42	5218	c.5148C>T	c.(5146-5148)CGC>CGT	p.R1716R		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1716	VWFA.					extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		CTACCACCAGGCGCAGACGCT	0.542													6	58					0	0	0.00198382	0	0
HTR2A	3356	broad.mit.edu	37	13	47466530	47466530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:47466530G>A	uc001vbq.2	-	2	742	c.608C>T	c.(607-609)TCA>TTA	p.S203L	HTR2A_uc001vbr.2_Missense_Mutation_p.S103L|HTR2A_uc010acr.2_Missense_Mutation_p.S203L	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	203	Helical; Name=4; (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CTTACCTACTGATATGGTCCA	0.443													32	411					0	0	0.00283554	0	0
HTR2A	3356	broad.mit.edu	37	13	47470038	47470038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:47470038C>T	uc001vbq.2	-	1	138	c.4G>A	c.(4-6)GAT>AAT	p.D2N	HTR2A_uc001vbr.2_Intron|HTR2A_uc010acr.2_Missense_Mutation_p.D2N	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	2	Extracellular (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	CAAAGAATATCCATGTCTAAG	0.408													7	49					0	0	0.000157383	0	0
ATP7B	540	broad.mit.edu	37	13	52515256	52515256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:52515256C>T	uc001vfw.2	-	16	3674	c.3517G>A	c.(3517-3519)GAG>AAG	p.E1173K	ATP7B_uc010adv.2_Missense_Mutation_p.E743K|ATP7B_uc001vfx.2_Missense_Mutation_p.E966K|ATP7B_uc001vfy.2_Missense_Mutation_p.E1062K|ATP7B_uc010tgt.1_Missense_Mutation_p.E1108K|ATP7B_uc010tgu.1_Missense_Mutation_p.E1125K|ATP7B_uc010tgv.1_Missense_Mutation_p.E1095K|ATP7B_uc001vfv.2_Missense_Mutation_p.E445K|ATP7B_uc010tgs.1_Missense_Mutation_p.E384K	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1173	Cytoplasmic (Potential).		E -> G (in WD).|E -> K (in WD).		ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CCTTTCATCTCGTGGTCTGTC	0.502									Wilson_disease				9	74					0	0	0.000274275	0	0
THSD1	55901	broad.mit.edu	37	13	52952485	52952485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:52952485C>T	uc001vgo.2	-	5	2165	c.1620G>A	c.(1618-1620)ATG>ATA	p.M540I	THSD1_uc001vgp.2_Missense_Mutation_p.M487I|THSD1_uc010tgz.1_Missense_Mutation_p.M161I|THSD1_uc010aea.2_Missense_Mutation_p.M1I	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	540	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		CTTTCTTTTTCATCTCCTTTA	0.532													15	136					0	0	0.00074312	0	0
CKAP2	26586	broad.mit.edu	37	13	53035978	53035978	+	Silent	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:53035978C>G	uc001vgv.2	+	4	1217	c.1020C>G	c.(1018-1020)CCC>CCG	p.P340P	CKAP2_uc001vgt.2_Silent_p.P339P|CKAP2_uc001vgu.2_Silent_p.P339P|CKAP2_uc010tha.1_Silent_p.P291P	NM_001098525	NP_001091995	Q8WWK9	CKAP2_HUMAN	cytoskeleton associated protein 2 isoform 2	340					apoptosis|cell cycle	centrosome|microtubule|spindle pole				ovary(1)|skin(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.6e-08)		AGTCAGAGCCCGTTGACCAGC	0.388													5	76					0	0	0.000602214	0	0
PCDH20	64881	broad.mit.edu	37	13	61986195	61986195	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:61986195C>T	uc001vid.3	-	2	2401	c.2037G>A	c.(2035-2037)GTG>GTA	p.V679V	PCDH20_uc010thj.1_Silent_p.V679V	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	652	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		CACTCTGGTTCACCACAGAGA	0.453													11	64					0	0	0.000978159	0	0
KLHL1	57626	broad.mit.edu	37	13	70456507	70456507	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:70456507A>T	uc001vip.2	-	5	1929	c.1135T>A	c.(1135-1137)TTG>ATG	p.L379M	KLHL1_uc010thm.1_Missense_Mutation_p.L318M	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	379					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CACATCATCAATGCATGGAAG	0.438													13	59					0	0	0.00136819	0	0
KLHL1	57626	broad.mit.edu	37	13	70681382	70681382	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:70681382C>T	uc001vip.2	-	1	1244	c.450G>A	c.(448-450)GTG>GTA	p.V150V	KLHL1_uc010thm.1_Silent_p.V150V|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	150					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TGTCTGGCTCCACTTTGAGCT	0.532													12	138					0	0	0.000978159	0	0
LMO7	4008	broad.mit.edu	37	13	76408475	76408475	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:76408475C>T	uc001vjv.2	+	14	3239	c.2479C>T	c.(2479-2481)CAA>TAA	p.Q827*	LMO7_uc010thv.1_Nonsense_Mutation_p.Q778*|LMO7_uc001vjt.1_Nonsense_Mutation_p.Q726*|LMO7_uc010thw.1_Nonsense_Mutation_p.Q677*|LMO7_uc001vjw.1_Nonsense_Mutation_p.Q733*	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1112	PDZ.					cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		GGCTAAGGCTCAAGAAACTGG	0.433													6	61					0	0	0.000157383	0	0
LMO7	4008	broad.mit.edu	37	13	76415931	76415931	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:76415931C>T	uc001vjv.2	+	21	3904	c.3144C>T	c.(3142-3144)GAC>GAT	p.D1048D	LMO7_uc010thv.1_Silent_p.D999D|LMO7_uc001vjt.1_Silent_p.D947D|LMO7_uc010thw.1_Silent_p.D925D|LMO7_uc001vjw.1_Silent_p.D954D	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1333						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		TTCATGAGGACCAAGGAAAGA	0.517													9	56					0	0	0.000442599	0	0
MYCBP2	23077	broad.mit.edu	37	13	77745767	77745767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:77745767C>T	uc001vkf.2	-	39	5631	c.5540G>A	c.(5539-5541)AGT>AAT	p.S1847N	MYCBP2_uc010aev.2_Missense_Mutation_p.S1251N	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1847					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		ATCAAATTCACTCCTGTAGCA	0.358													4	38					0	0	0.00024832	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368537	86368537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:86368537C>T	uc001vll.1	-	2	2566	c.2107G>A	c.(2107-2109)GAA>AAA	p.E703K	SLITRK6_uc010afe.1_Missense_Mutation_p.E156K	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	703	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CTCTCTTCTTCCTCTTCCAGA	0.433													5	45					0	0	0.00116845	0	0
CLDN10	9071	broad.mit.edu	37	13	96086185	96086185	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:96086185G>A	uc001vmg.2	+	1	333	c.98G>A	c.(97-99)CGA>CAA	p.R33Q	CLDN10_uc010tii.1_Missense_Mutation_p.R33Q	NM_182848	NP_878268	P78369	CLD10_HUMAN	claudin 10 isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.18)			GTGACCACGCGAGCCTCCTCG	0.562													10	40					0	0	0.000978159	0	0
UGGT2	55757	broad.mit.edu	37	13	96506627	96506627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:96506627G>A	uc001vmt.2	-	35	4281	c.4111C>T	c.(4111-4113)CGT>TGT	p.R1371C	UGGT2_uc001vms.2_Missense_Mutation_p.R91C	NM_020121	NP_064506	Q9NYU1	UGGG2_HUMAN	UDP-glucose ceramide glucosyltransferase-like 2	1371	Glucosyltransferase.				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity			ovary(2)|central_nervous_system(1)	3						TTCCAGAAACGATATCCATCC	0.393													7	80					0	0	0.000157383	0	0
OXGR1	27199	broad.mit.edu	37	13	97639725	97639725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:97639725C>T	uc001vmx.1	-	4	533	c.289G>A	c.(289-291)GAA>AAA	p.E97K	OXGR1_uc010afr.1_Missense_Mutation_p.E97K	NM_080818	NP_543008	Q96P68	OXGR1_HUMAN	oxoglutarate (alpha-ketoglutarate) receptor 1	97	Extracellular (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)|skin(1)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.186)			ATCCAGTTTTCGCCACTGGCA	0.473													7	33					0	0	0.000157383	0	0
PCCA	5095	broad.mit.edu	37	13	100953816	100953816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:100953816C>T	uc001voo.2	+	13	1206	c.1168C>T	c.(1168-1170)CGC>TGC	p.R390C	PCCA_uc010aga.2_Missense_Mutation_p.R364C|PCCA_uc010tiz.1_Missense_Mutation_p.R390C|PCCA_uc001vop.2_RNA	NM_000282	NP_000273	P05165	PCCA_HUMAN	propionyl-Coenzyme A carboxylase, alpha	390	Biotin carboxylation.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|enzyme binding|metal ion binding|propionyl-CoA carboxylase activity			skin(2)	2	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Biotin(DB00121)	AGCTGATATTCGCATCAACGG	0.498													11	104					0	0	0.000978159	0	0
NALCN	259232	broad.mit.edu	37	13	101726881	101726881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:101726881C>T	uc001vox.1	-	36	4276	c.4087G>A	c.(4087-4089)GGG>AGG	p.G1363R		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1363	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ATATTCTCCCCATATTTCACA	0.323													12	93					0	0	0.000978159	0	0
KDELC1	79070	broad.mit.edu	37	13	103445760	103445760	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:103445760G>A	uc001vpq.3	-	4	987	c.603C>T	c.(601-603)ATC>ATT	p.I201I	KDELC1_uc001vpr.3_5'UTR	NM_024089	NP_076994	Q6UW63	KDEL1_HUMAN	KDEL (Lys-Asp-Glu-Leu) containing 1 precursor	201						endoplasmic reticulum lumen				ovary(1)	1	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CATGAGTCTTGATATAAACCT	0.343													35	167					0	0	0.000953801	0	0
ERCC5	2073	broad.mit.edu	37	13	103518707	103518707	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:103518707C>T	uc001vpw.2	+	10	2738	c.2295C>T	c.(2293-2295)ACC>ACT	p.T765T	ERCC5_uc001vpu.1_Silent_p.T1219T|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Silent_p.T597T	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	765	I-domain.				negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTACTGTCACCGGACAGATGT	0.517			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				4	44					0	0	0.000602214	0	0
ERCC5	2073	broad.mit.edu	37	13	103520529	103520529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:103520529C>T	uc001vpw.2	+	12	3043	c.2600C>T	c.(2599-2601)CCA>CTA	p.P867L	ERCC5_uc001vpu.1_Missense_Mutation_p.P1321L|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_Missense_Mutation_p.P699L	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	867	I-domain.			EGIPTVGCV -> GNTNCGLC (in Ref. 2; BAA03812).	negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GAAGGAATACCAACTGTGGGT	0.348			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				12	116					0	0	0.00136819	0	0
COL4A1	1282	broad.mit.edu	37	13	110822999	110822999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:110822999C>T	uc001vqw.3	-	42	3759	c.3637G>A	c.(3637-3639)GGT>AGT	p.G1213S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1213	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCCGGAGGACCCATGAATCCT	0.617													7	17					0	0	0.000157383	0	0
COL4A1	1282	broad.mit.edu	37	13	110827591	110827591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:110827591C>T	uc001vqw.3	-	37	3294	c.3172G>A	c.(3172-3174)GGC>AGC	p.G1058S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1058	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CCTGGGATGCCTATGCCAGGT	0.582													5	67					0	0	0.000157383	0	0
COL4A1	1282	broad.mit.edu	37	13	110850934	110850934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:110850934C>T	uc001vqw.3	-	21	1287	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	389	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TCTCCTCTTTCACCAGGGAAG	0.597													15	58					0	0	0.000958276	0	0
COL4A2	1284	broad.mit.edu	37	13	111098181	111098181	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr13:111098181C>T	uc001vqx.2	+	17	1252	c.963C>T	c.(961-963)AGC>AGT	p.S321S		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	321	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			TGCAGGGAAGCCGAGGCCTGG	0.418													22	95					0	0	0.00127121	0	0
OR4M1	441670	broad.mit.edu	37	14	20248603	20248603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:20248603G>A	uc010tku.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCCTACCAGGAAATATCCTT	0.423													11	181					0	0	0.000308642	0	0
OR4K14	122740	broad.mit.edu	37	14	20482453	20482453	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:20482453C>T	uc010tky.1	-	1	900	c.900G>A	c.(898-900)AAG>AAA	p.K300K		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TTTGCAGTTTCTTCATAGCTG	0.373													17	164					0	0	0.00152264	0	0
OR11G2	390439	broad.mit.edu	37	14	20666238	20666238	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:20666238C>T	uc010tlb.1	+	1	744	c.744C>T	c.(742-744)CTC>CTT	p.L248L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	248	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TCTTTATGCTCTTTCTCTTCA	0.498													18	173					0	0	0.00152264	0	0
MYH7	4625	broad.mit.edu	37	14	23887557	23887557	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:23887557C>A	uc001wjx.2	-	30	4137	c.4031G>T	c.(4030-4032)CGG>CTG	p.R1344L	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1344	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GTACTGCTCCCGCAGCAGGTC	0.667													4	28					0.000602214	0.00240203	0.000602214	1	0
MYH7	4625	broad.mit.edu	37	14	23897715	23897715	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:23897715G>A	uc001wjx.2	-	15	1678	c.1572C>T	c.(1570-1572)ATC>ATT	p.I524I		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	524	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GCACCTTCTCGATGAGGTCAA	0.512													10	43					0	0	0.000442599	0	0
MYH7	4625	broad.mit.edu	37	14	23900877	23900877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:23900877C>T	uc001wjx.2	-	8	755	c.649G>A	c.(649-651)GAG>AAG	p.E217K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	217	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		ATCTGGTCCTCCAGGGTGCCC	0.627													12	42					0	0	0.00136819	0	0
PSME2	5721	broad.mit.edu	37	14	24613646	24613646	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:24613646T>C	uc001wmj.2	-	7	457	c.392A>G	c.(391-393)AAG>AGG	p.K131R	FAM158A_uc001wmi.2_5'Flank|PSME2_uc001wmk.2_Missense_Mutation_p.K54R|RNF31_uc001wml.1_5'Flank	NM_002818	NP_002809	Q9UL46	PSME2_HUMAN	proteasome activator subunit 2	131					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome activator complex					0				GBM - Glioblastoma multiforme(265;0.00839)		ATCTTCAATCTTGGGGATCAG	0.423													4	64					0	0	0.00198382	0	0
TM9SF1	10548	broad.mit.edu	37	14	24661379	24661379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:24661379G>A	uc001wnb.1	-	4	1499	c.1151C>T	c.(1150-1152)TCT>TTT	p.S384F	IPO4_uc001wmx.1_5'Flank|IPO4_uc001wmy.1_5'Flank|IPO4_uc010tnz.1_5'Flank|IPO4_uc001wmw.1_5'Flank|IPO4_uc001wmz.1_5'Flank|TM9SF1_uc010toa.1_Missense_Mutation_p.S297F|TM9SF1_uc001wna.1_RNA|TM9SF1_uc010tob.1_Missense_Mutation_p.S619F|TM9SF1_uc001wnc.2_Missense_Mutation_p.S384F|TM9SF1_uc001wnd.2_Missense_Mutation_p.S240F	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	384	Helical; (Potential).				autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		GTCCTCACCAGAGAAGAGACT	0.428													6	95					0	0	0.00116845	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885812	24885812	+	Silent	SNP	C	T	T	rs150242696	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:24885812C>T	uc001wpf.3	+	9	5175	c.4857C>T	c.(4855-4857)ATC>ATT	p.I1619I		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1619	Integrase catalytic.				DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						ACCTGCAGATCGAGGTGGTGG	0.582													5	28					0	0	0.000602214	0	0
CTSG	1511	broad.mit.edu	37	14	25042969	25042969	+	Silent	SNP	G	A	A	rs147260851	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:25042969G>A	uc001wpq.2	-	5	679	c.642C>T	c.(640-642)ATC>ATT	p.I214I		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	214	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		CATAGGAGACGATGCCGTGGG	0.557													7	73					0	0	0.000157383	0	0
C14orf19	280655	broad.mit.edu	37	14	35409455	35409455	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:35409455G>A	uc010tpo.1	+	1		c.328G>A				NR_002937				Homo sapiens chromosome 14 open reading frame 19 protein (C14orf19) mRNA, 3' UTR.												0						AGAGGATGATGAACAAACACT	0.493													8	44					0	0	0.000157383	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36207734	36207734	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:36207734G>A	uc001wti.2	-	12	1963	c.1572C>T	c.(1570-1572)ACC>ACT	p.T524T	RALGAPA1_uc001wtj.2_Silent_p.T524T|RALGAPA1_uc010tpv.1_Silent_p.T524T|RALGAPA1_uc010tpw.1_Silent_p.T524T|RALGAPA1_uc001wtk.1_Silent_p.T375T	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	524					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						AAACTGCCTGGGTACCAGCTC	0.368													7	49					0	0	0.00198382	0	0
SEC23A	10484	broad.mit.edu	37	14	39545159	39545159	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:39545159A>G	uc001wup.1	-	8	1190	c.967T>C	c.(967-969)TAT>CAT	p.Y323H	SEC23A_uc010tqa.1_Missense_Mutation_p.Y185H|SEC23A_uc010tqb.1_Missense_Mutation_p.Y294H|SEC23A_uc010tqc.1_Missense_Mutation_p.Y185H	NM_006364	NP_006355	Q15436	SC23A_HUMAN	SEC23-related protein A	323					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|Golgi membrane|smooth endoplasmic reticulum membrane	protein binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)	5	Hepatocellular(127;0.213)		Lung(238;0.00047)|LUAD - Lung adenocarcinoma(48;0.000565)	GBM - Glioblastoma multiforme(112;0.0151)		TTTTTAACATATTTGGCATTG	0.378													5	87					0	0	0.00198382	0	0
ATL1	51062	broad.mit.edu	37	14	51087425	51087425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:51087425G>A	uc001wyf.3	+	9	1212	c.971G>A	c.(970-972)GGT>GAT	p.G324D	ATL1_uc001wyd.3_Missense_Mutation_p.G324D|ATL1_uc001wye.3_Missense_Mutation_p.G324D	NM_015915	NP_056999	Q8WXF7	ATLA1_HUMAN	atlastin GTPase 1 isoform a	324	Cytoplasmic.				axonogenesis|cell death|endoplasmic reticulum organization|protein homooligomerization	axon|endoplasmic reticulum membrane|Golgi cis cisterna|Golgi membrane|integral to membrane|microsome	GTP binding|GTPase activity|identical protein binding			skin(3)|central_nervous_system(1)	4						ACCTGCCGGGGTCTGGTGGAG	0.368													12	59					0	0	0.00244969	0	0
TXNDC16	57544	broad.mit.edu	37	14	52981633	52981633	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:52981633G>A	uc001wzs.2	-	8	1019	c.570C>T	c.(568-570)GTC>GTT	p.V190V	TXNDC16_uc010tqu.1_Silent_p.V185V|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	190					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					CTGTGGTTAAGACAAATTGGT	0.353													17	114					0	0	0.00074312	0	0
SAMD4A	23034	broad.mit.edu	37	14	55236879	55236879	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:55236879C>T	uc001xbb.2	+	8	1652	c.1651C>T	c.(1651-1653)CTC>TTC	p.L551F	SAMD4A_uc001xbc.2_Missense_Mutation_p.L463F|SAMD4A_uc001xbg.2_Missense_Mutation_p.L143F	NM_015589	NP_056404	Q9UPU9	SMAG1_HUMAN	sterile alpha motif domain containing 4 isoform	552					positive regulation of translation	cell junction|cytoplasm|dendrite|synapse|synaptosome	translation repressor activity				0						GGTGCAGAAGCTCTTTCGGTC	0.423													12	93					0	0	0.000978159	0	0
OTX2	5015	broad.mit.edu	37	14	57269073	57269073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:57269073C>T	uc001xcp.2	-	3	421	c.250G>A	c.(250-252)GTA>ATA	p.V84I	OTX2_uc010aou.2_Missense_Mutation_p.V84I|OTX2_uc001xcq.2_Missense_Mutation_p.V92I	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	84	Homeobox.				axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					TTAAACCATACCTTGGAAGGG	0.418													15	146					0	0	0.000958276	0	0
SLC35F4	341880	broad.mit.edu	37	14	58060701	58060701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:58060701G>A	uc001xdb.1	-	2	353	c.353C>T	c.(352-354)TCC>TTC	p.S118F	SLC35F4_uc010aoz.1_RNA|SLC35F4_uc010apa.1_5'UTR	NM_001080455	NP_001073924			solute carrier family 35, member F4											ovary(2)	2						AACTCCTGAGGATCCTTGGTT	0.458													4	35					0	0	0.000602214	0	0
SYT16	83851	broad.mit.edu	37	14	62463248	62463248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:62463248G>A	uc001xfu.1	+	1	708	c.511G>A	c.(511-513)GGA>AGA	p.G171R	SYT16_uc010tsd.1_Missense_Mutation_p.G171R	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	171										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		AACTGTTAATGGAAAAAAGCA	0.398													9	69					0	0	0.000978159	0	0
FUT8	2530	broad.mit.edu	37	14	66028393	66028393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:66028393C>T	uc001xin.2	+	3	1309	c.112C>T	c.(112-114)CAC>TAC	p.H38Y	FUT8_uc001xio.2_Missense_Mutation_p.H38Y|FUT8_uc010tsp.1_Intron|FUT8_uc001xir.3_RNA|FUT8_uc001xip.2_Missense_Mutation_p.H38Y|FUT8_uc001xiq.2_Intron	NM_178155	NP_835368	Q9BYC5	FUT8_HUMAN	fucosyltransferase 8 isoform a	38	Lumenal (Potential).				in utero embryonic development|L-fucose catabolic process|N-glycan processing|oligosaccharide biosynthetic process|post-translational protein modification|protein glycosylation in Golgi|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	glycoprotein 6-alpha-L-fucosyltransferase activity|SH3 domain binding			ovary(1)	1				all cancers(60;0.00109)|OV - Ovarian serous cystadenocarcinoma(108;0.00242)|BRCA - Breast invasive adenocarcinoma(234;0.0114)		CCATCCTGATCACTCTAGCCG	0.473													6	44					0	0	0.00198382	0	0
GALNTL1	57452	broad.mit.edu	37	14	69814701	69814701	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:69814701C>T	uc010aqu.1	+	14	1614	c.1521C>T	c.(1519-1521)AAC>AAT	p.N507N	GALNTL1_uc001xla.1_Silent_p.N507N|GALNTL1_uc001xlb.1_Silent_p.N507N	NM_020692	NP_065743	Q8N428	GLTL1_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	507	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(1)|central_nervous_system(1)	2				all cancers(60;0.00793)|BRCA - Breast invasive adenocarcinoma(234;0.0174)|OV - Ovarian serous cystadenocarcinoma(108;0.0656)		AGATGTGCAACCCTAGAGAAG	0.622													5	28					0	0	0.000602214	0	0
RBM25	58517	broad.mit.edu	37	14	73538380	73538380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:73538380C>T	uc001xno.2	+	2	239	c.31C>T	c.(31-33)CCC>TCC	p.P11S	RBM25_uc001xnn.3_Missense_Mutation_p.P11S|RBM25_uc010ttu.1_Missense_Mutation_p.P11S|RBM25_uc001xnp.2_5'UTR	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	11					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		GAATCGCCCTCCCATGGGAAT	0.433													7	57					0	0	0.000274275	0	0
TMEM63C	57156	broad.mit.edu	37	14	77710796	77710796	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:77710796C>T	uc001xtf.2	+	16	1658	c.1446C>T	c.(1444-1446)ACC>ACT	p.T482T	TMEM63C_uc010asq.1_Silent_p.T482T	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	482						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CCCACTGGACCAGGTGACCTG	0.617													6	35					0	0	0.00116845	0	0
TMEM63C	57156	broad.mit.edu	37	14	77715210	77715210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:77715210C>T	uc001xtf.2	+	20	2077	c.1865C>T	c.(1864-1866)CCT>CTT	p.P622L	TMEM63C_uc010asq.1_Missense_Mutation_p.P622L	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	622	Helical; (Potential).					integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		ATCATTGTGCCTTTTGGTGAG	0.547													8	67					0	0	0.000442599	0	0
C14orf174	161394	broad.mit.edu	37	14	77845346	77845346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:77845346G>A	uc001xtq.1	+	1	1585	c.1585G>A	c.(1585-1587)GAA>AAA	p.E529K	TMED8_uc010ast.1_5'Flank|TMED8_uc001xto.1_5'Flank	NM_001010860	NP_001010860	Q9P1V8	SAM15_HUMAN	hypothetical protein LOC161394	529											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0278)		TGAAGATGACGAAACCCAGCC	0.443													9	50					0	0	0.000442599	0	0
VIPAR	63894	broad.mit.edu	37	14	77915670	77915670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:77915670G>A	uc001xtt.1	-	7	751	c.413C>T	c.(412-414)GCT>GTT	p.A138V	VIPAR_uc001xtu.1_Missense_Mutation_p.A138V|VIPAR_uc010tvj.1_Missense_Mutation_p.A89V|VIPAR_uc001xtv.1_Missense_Mutation_p.A138V	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	138					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CAGCTCTGGAGCATAGCTTTT	0.368													8	66					0	0	0.000442599	0	0
KCNK13	56659	broad.mit.edu	37	14	90650906	90650906	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:90650906C>T	uc001xye.1	+	2	1228	c.786C>T	c.(784-786)TTC>TTT	p.F262F		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	262						integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				TTGCCAACTTCGTCTTCATCC	0.493													9	55					0	0	0.000442599	0	0
C14orf102	55051	broad.mit.edu	37	14	90769098	90769098	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:90769098G>A	uc001xyi.1	-	6	1408	c.1377C>T	c.(1375-1377)CAC>CAT	p.H459H	C14orf102_uc010atp.1_Intron|C14orf102_uc001xyj.1_Silent_p.H228H	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	459							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GCAACGCAGGGTGAGATAAGA	0.433													5	52					0	0	0.000602214	0	0
SMEK1	55671	broad.mit.edu	37	14	91927811	91927811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:91927811G>A	uc001xzn.2	-	14	3127	c.2305C>T	c.(2305-2307)CCG>TCG	p.P769S	SMEK1_uc001xzm.2_Missense_Mutation_p.P756S|SMEK1_uc001xzo.2_Missense_Mutation_p.P756S|SMEK1_uc010atz.2_Missense_Mutation_p.P530S	NM_032560	NP_115949	Q6IN85	P4R3A_HUMAN	SMEK homolog 1, suppressor of mek1	769						microtubule organizing center|nucleus	protein binding				0		all_cancers(154;0.0691)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.221)		GGTGATCCCGGAGAACCAGGC	0.502													17	94					0	0	0.00074312	0	0
KIAA1409	57578	broad.mit.edu	37	14	94053211	94053212	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:94053211_94053212CC>AA	uc001ybv.1	+	19	2541_2542	c.2458_2459CC>AA	c.(2458-2460)CCT>AAT	p.P820N	KIAA1409_uc001ybs.1_Missense_Mutation_p.P820N	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	997						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AAAAGATCACCCTCAATTTTTA	0.366													12	188					0	0	6.4e-05	0	0
FAM181A	90050	broad.mit.edu	37	14	94394706	94394706	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:94394706G>A	uc001ybz.1	+	3	568	c.261G>A	c.(259-261)CTG>CTA	p.L87L	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Silent_p.L25L|FAM181A_uc001yca.1_Silent_p.L25L	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	87											0						AGGCAGCCCTGGATAAGTCCG	0.622													5	24					0	0	0.00116845	0	0
SERPINA6	866	broad.mit.edu	37	14	94776090	94776090	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:94776090G>A	uc001ycv.2	-	3	971	c.867C>T	c.(865-867)TCC>TCT	p.S289S	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	289					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	TCAGGCCTGCGGACCACCTGT	0.557													5	49					0	0	0.00198382	0	0
SERPINA9	327657	broad.mit.edu	37	14	94929461	94929461	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:94929461A>T	uc001ydf.2	-	5	1438	c.1277T>A	c.(1276-1278)CTA>CAA	p.L426Q	SERPINA9_uc001yde.2_Missense_Mutation_p.L326Q|SERPINA9_uc010avc.2_Missense_Mutation_p.L277Q|SERPINA9_uc001ydg.2_Missense_Mutation_p.L390Q	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	408					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		CACTTTCCCTAGAAAGAGAAT	0.428													7	67					0	0	0.000442599	0	0
SERPINA3	12	broad.mit.edu	37	14	95081348	95081348	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:95081348G>A	uc001ydp.2	+	2	649	c.570G>A	c.(568-570)GGG>GGA	p.G190G	SERPINA3_uc001ydo.3_Silent_p.G215G|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Silent_p.G190G|SERPINA3_uc001yds.2_Silent_p.G190G|SERPINA3_uc010avg.2_Silent_p.G190G	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	190					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		GAACTAGGGGGAAAATCACAG	0.493													12	117					0	0	0.00185496	0	0
SERPINA13	388007	broad.mit.edu	37	14	95108235	95108235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:95108235G>A	uc001ydt.2	+	2	840	c.752G>A	c.(751-753)AGA>AAA	p.R251K		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						ATGCTCCTCAGAGGTAAGAGC	0.567													6	53					0	0	0.000157383	0	0
DICER1	23405	broad.mit.edu	37	14	95593075	95593075	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:95593075G>A	uc001ydw.2	-	8	927	c.745C>T	c.(745-747)CAG>TAG	p.Q249*	DICER1_uc001ydv.2_Nonsense_Mutation_p.Q239*|DICER1_uc001ydx.2_Nonsense_Mutation_p.Q249*	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	249					negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		TCACATGGCTGAGAAGTATAC	0.303			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				20	153					0	0	0.00278032	0	0
TCL6	27004	broad.mit.edu	37	14	96137710	96137710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:96137710C>T	uc001yeq.2	+	7	1906	c.437C>T	c.(436-438)TCG>TTG	p.S146L	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Missense_Mutation_p.S88L|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_3'UTR|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		ctgtctcattcgcctctggat	0.065			T	TRA@	T-ALL								7	21					0	0	0.000442599	0	0
BDKRB1	623	broad.mit.edu	37	14	96731069	96731069	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:96731069C>T	uc001yfh.2	+	3	1258	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	BDKRB1_uc010avn.2_Intron	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	350	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		TCCAACTTTTCTGGCGGAATT	0.388													9	122					0	0	0.000442599	0	0
MIR154	406946	broad.mit.edu	37	14	101526174	101526174	+	RNA	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:101526174A>G	hsa-mir-154|MI0000480	+			c.83A>G			MIR496_hsa-mir-496|MI0003136_5'Flank|uc010awh.1_5'Flank|MIR377_hsa-mir-377|MI0000785_5'Flank																	0						TTTCAGTACCAAATCCCGCCT	0.517													4	73					0	0	0.00116845	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102463512	102463512	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:102463512G>A	uc001yks.2	+	16	3869	c.3705G>A	c.(3703-3705)CAG>CAA	p.Q1235Q		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1235	Potential.|Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TTCAGCAGCAGGTGGCAAACC	0.557													7	52					0	0	0.000157383	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104208206	104208206	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:104208206G>A	uc001yof.1	-	11	2026	c.1743C>T	c.(1741-1743)TCC>TCT	p.S581S	PPP1R13B_uc010awv.1_RNA|PPP1R13B_uc001yog.1_Silent_p.S448S	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	581	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				GGAGGTACATGGAGTATATGG	0.498													10	78					0	0	0.00136819	0	0
ADAM6	8755	broad.mit.edu	37	14	106653438	106653438	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:106653438C>T	uc010tyt.1	-	972		c.23494G>A								Parts of antibodies, mostly variable regions.												0						CAGGAAGTTCCTGGAATTGTC	0.517													8	15					0	0	0.000157383	0	0
ADAM6	8755	broad.mit.edu	37	14	107062293	107062293	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:107062293C>T	uc010tyt.1	-	131		c.6302G>A								Parts of antibodies, mostly variable regions.												0						CCAGCCCCTTCCCTGGGGGCT	0.572													4	13					0	0	0.00024832	0	0
ADAM6	8755	broad.mit.edu	37	14	107283016	107283016	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:107283016C>T	uc010tyt.1	-	1		c.72G>A			uc001ytb.1_Missense_Mutation_p.A43T					Parts of antibodies, mostly variable regions.												0						TAACCAGAAGCCTTGCAGGAG	0.572													5	57					0	0	0.00116845	0	0
LOC646214	646214	broad.mit.edu	37	15	21937794	21937794	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:21937794G>A	uc010tzj.1	-	1		c.2946C>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CTAGTTTGGTGATATTTGAGG	0.448													12	167					0	0	0.000978159	0	0
MKRN3	7681	broad.mit.edu	37	15	23812123	23812123	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:23812123G>A	uc001ywh.3	+	1	1670	c.1194G>A	c.(1192-1194)AAG>AAA	p.K398K	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Silent_p.K398K	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	398	C3H1-type 3.					ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		TGAGCAACAAGGCCTGCAGGT	0.512													13	92					0	0	0.000308642	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890511	23890511	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:23890511G>A	uc001ywj.3	-	1	665	c.570C>T	c.(568-570)ACC>ACT	p.T190T		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GAAACTGGGAGGTAGCTGGGA	0.582													8	82					0	0	0.000157383	0	0
NDN	4692	broad.mit.edu	37	15	23931639	23931639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:23931639C>T	uc001ywk.2	-	1	812	c.726G>A	c.(724-726)ATG>ATA	p.M242I		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	242	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		TCAGGTAATTCATTTGGACGA	0.592									Prader-Willi_syndrome				10	45					0	0	0.000442599	0	0
C15orf2	23742	broad.mit.edu	37	15	24922781	24922781	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:24922781C>T	uc001ywo.2	+	1	2241	c.1767C>T	c.(1765-1767)TTC>TTT	p.F589F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	589					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TTGTTATTTTCACATCTTCCC	0.488													12	64					0	0	0.00136819	0	0
GABRB3	2562	broad.mit.edu	37	15	27184505	27184505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:27184505C>T	uc001zbb.2	-	1	182	c.79G>A	c.(79-81)GAA>AAA	p.E27K	GABRA5_uc001zbd.1_Intron	NM_021912	NP_068712	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	Error:Variant_position_missing_in_P28472_after_alignment					synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CCCCCGATTTCAAAGAACAGG	0.572													12	33					0	0	0.00136819	0	0
HERC2	8924	broad.mit.edu	37	15	28474724	28474724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:28474724G>A	uc001zbj.2	-	33	5108	c.5002C>T	c.(5002-5004)CGC>TGC	p.R1668C		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1668					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCTTCCAGGCGAACCTCTGCT	0.388													17	100					0	0	0.00121646	0	0
MTMR15	22909	broad.mit.edu	37	15	31196991	31196991	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:31196991T>C	uc001zff.2	+	2	416	c.125T>C	c.(124-126)CTT>CCT	p.L42P	MTMR15_uc001zfc.3_Missense_Mutation_p.L42P|MTMR15_uc010azw.2_Missense_Mutation_p.L42P|MTMR15_uc001zfd.3_Missense_Mutation_p.L42P|MTMR15_uc001zfe.2_5'UTR	NM_014967	NP_055782	Q9Y2M0	FAN1_HUMAN	myotubularin related protein 15 isoform a	42	UBZ-type.				double-strand break repair via homologous recombination|nucleotide-excision repair, DNA incision	nucleus	5'-3' exonuclease activity|5'-flap endonuclease activity|DNA binding|magnesium ion binding|phosphodiesterase I activity|ubiquitin binding				0		all_lung(180;2.23e-09)		all cancers(64;4.72e-15)|Epithelial(43;5.4e-11)|GBM - Glioblastoma multiforme(186;0.000136)|BRCA - Breast invasive adenocarcinoma(123;0.00402)|Lung(196;0.168)		CCTGCTAAACTTGCCTGCCCC	0.403								Direct_reversal_of_damage|Editing_and_processing_nucleases					5	58					0	0	0.000602214	0	0
RYR3	6263	broad.mit.edu	37	15	33988430	33988430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:33988430G>A	uc001zhi.2	+	39	5942	c.5872G>A	c.(5872-5874)GAA>AAA	p.E1958K	RYR3_uc010bar.2_Missense_Mutation_p.E1958K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1958	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AACATTGAAGGAACTCATCTC	0.532													6	34					0	0	0.000157383	0	0
MEIS2	4212	broad.mit.edu	37	15	37242539	37242539	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:37242539G>A	uc001zjr.2	-	9	2000	c.963C>T	c.(961-963)CTC>CTT	p.L321L	MEIS2_uc001zjl.2_Silent_p.L308L|MEIS2_uc010ucj.1_Silent_p.L308L|MEIS2_uc001zjm.2_Silent_p.L233L|MEIS2_uc001zjn.2_Silent_p.L175L|MEIS2_uc001zjo.2_Silent_p.L321L|MEIS2_uc001zjp.2_Silent_p.L321L|MEIS2_uc001zjs.2_Silent_p.L321L|MEIS2_uc001zju.2_Silent_p.L308L|MEIS2_uc001zjt.2_Silent_p.L321L	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	321	Homeobox; TALE-type.				negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		TGTTTACTTGGAGAATTGTAA	0.353													7	86					0	0	0.000157383	0	0
TMCO5A	145942	broad.mit.edu	37	15	38228562	38228562	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:38228562T>C	uc001zjw.2	+	2	141	c.38T>C	c.(37-39)ATT>ACT	p.I13T	TMCO5A_uc001zjv.1_Missense_Mutation_p.I13T|TMCO5A_uc010bbc.1_Missense_Mutation_p.I13T	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	13	Potential.					integral to membrane				central_nervous_system(1)	1						AAAAGAAACATTATCAGTTTG	0.388													11	51					0	0	0.000978159	0	0
TMCO5A	145942	broad.mit.edu	37	15	38229547	38229547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:38229547G>A	uc001zjw.2	+	4	368	c.265G>A	c.(265-267)GAA>AAA	p.E89K	TMCO5A_uc001zjv.1_Missense_Mutation_p.E89K|TMCO5A_uc010bbc.1_Missense_Mutation_p.E89K	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	89	Potential.					integral to membrane				central_nervous_system(1)	1						TCTCTCACAGGAAAGGAAGAA	0.438													6	33					0	0	0.000274275	0	0
RASGRP1	10125	broad.mit.edu	37	15	38811524	38811524	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:38811524G>A	uc001zke.3	-	4	553	c.375C>T	c.(373-375)ATC>ATT	p.I125I	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_5'UTR|RASGRP1_uc010bbg.2_5'UTR|RASGRP1_uc001zkd.3_Silent_p.I125I	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	125	N-terminal Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		CAAAATAACAGATCTTCAGGC	0.423													19	87					0	0	0.00278032	0	0
THBS1	7057	broad.mit.edu	37	15	39882122	39882122	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:39882122C>T	uc001zkh.2	+	13	2222	c.2043C>T	c.(2041-2043)GGC>GGT	p.G681G	THBS1_uc010bbi.2_Silent_p.G153G	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	681	EGF-like 3.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GCAAGCCTGGCTACGCTGGCA	0.592													4	9					0	0	0.00024832	0	0
DISP2	85455	broad.mit.edu	37	15	40655956	40655956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:40655956C>T	uc001zlk.1	+	2	339	c.250C>T	c.(250-252)CCA>TCA	p.P84S		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	84					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		GCCTGTGGGTCCATCCAGCCC	0.647													5	32					0	0	0.000602214	0	0
CHST14	113189	broad.mit.edu	37	15	40764369	40764370	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:40764369_40764370CC>TT	uc001zlw.2	+	1	1157_1158	c.957_958CC>TT	c.(955-960)GTCCGA>GTTTGA	p.R320*		NM_130468	NP_569735	Q8NCH0	CHSTE_HUMAN	dermatan 4 sulfotransferase 1	320	Lumenal (Potential).				carbohydrate biosynthetic process|dermatan sulfate proteoglycan metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity|phosphate binding				0		all_cancers(109;2.34e-14)|all_epithelial(112;1.08e-11)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0781)		CACCTCACGTCCGATTTCCAGC	0.634													7	49					0	0	6.4e-05	0	0
RPUSD2	27079	broad.mit.edu	37	15	40866156	40866156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:40866156C>T	uc001zmd.1	+	3	1334	c.1334C>T	c.(1333-1335)CCC>CTC	p.P445L		NM_152260	NP_689473	Q8IZ73	RUSD2_HUMAN	RNA pseudouridylate synthase domain containing	445					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			skin(1)	1		all_cancers(109;2.74e-14)|all_epithelial(112;1.64e-11)|Lung NSC(122;6.69e-09)|all_lung(180;1.22e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.1e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0786)		TCTACGGCCCCCTCCTCAGAG	0.587													9	62					0	0	0.000978159	0	0
INO80	54617	broad.mit.edu	37	15	41341560	41341560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:41341560G>A	uc001zni.2	-	21	2714	c.2501C>T	c.(2500-2502)TCC>TTC	p.S834F	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	834	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						TGGCTTTAGGGAAATATGAAA	0.403													10	71					0	0	0.000442599	0	0
NDUFAF1	51103	broad.mit.edu	37	15	41689109	41689109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:41689109G>A	uc001znx.2	-	2	531	c.149C>T	c.(148-150)TCC>TTC	p.S50F	NDUFAF1_uc010bcf.2_RNA	NM_016013	NP_057097	Q9Y375	CIA30_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	50					mitochondrial electron transport, NADH to ubiquinone|protein complex assembly	mitochondrial respiratory chain complex I	unfolded protein binding			ovary(1)	1		all_cancers(109;5.07e-19)|all_epithelial(112;2.43e-16)|Lung NSC(122;1.81e-11)|all_lung(180;4.81e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;8e-17)|GBM - Glioblastoma multiforme(113;1.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.114)		CCTCTGTGAGGAGGCTTTGCC	0.443													26	123					0	0	0.000878237	0	0
MAP1A	4130	broad.mit.edu	37	15	43820287	43820287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:43820287C>T	uc001zrt.2	+	4	7083	c.6616C>T	c.(6616-6618)CCA>TCA	p.P2206S		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	2206						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	GGCTCTGGCTCCAGGACCCCC	0.642													14	73					0	0	0.00185496	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43827477	43827477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:43827477G>A	uc001zrw.2	-	31	3880	c.3697C>T	c.(3697-3699)CTT>TTT	p.L1233F	PPIP5K1_uc001zrx.1_Missense_Mutation_p.L1206F|PPIP5K1_uc001zru.2_Missense_Mutation_p.L1208F|PPIP5K1_uc001zry.3_Missense_Mutation_p.L1208F|PPIP5K1_uc001zrv.2_Intron	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1233					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						GGTTCAAAAAGCTCTTGCTCC	0.557													12	92					0	0	0.00136819	0	0
CATSPER2	117155	broad.mit.edu	37	15	43928403	43928403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:43928403G>A	uc001zsh.2	-	8	1072	c.857C>T	c.(856-858)TCC>TTC	p.S286F	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.S286F|CATSPER2_uc001zsj.2_Missense_Mutation_p.S286F	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	286					cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		TGTTACCAGGGAATTCGGGAG	0.423													12	123					0	0	0.00152264	0	0
SPG11	80208	broad.mit.edu	37	15	44884632	44884632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:44884632G>A	uc001ztx.2	-	27	4671	c.4640C>T	c.(4639-4641)TCC>TTC	p.S1547F	SPG11_uc010ueh.1_Missense_Mutation_p.S1547F|SPG11_uc010uei.1_Missense_Mutation_p.S1547F|SPG11_uc001zty.1_Missense_Mutation_p.S276F	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	1547	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		TAGTAACGGGGAATCCTTTGA	0.303													13	84					0	0	0.00244969	0	0
SLC28A2	9153	broad.mit.edu	37	15	45554283	45554283	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:45554283C>T	uc001zva.2	+	4	306	c.241C>T	c.(241-243)CTG>TTG	p.L81L		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	81	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		CAAGAAGATCCTGTTGGGCCT	0.413													7	102					0	0	0.000157383	0	0
ATP8B4	79895	broad.mit.edu	37	15	50158628	50158628	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:50158628C>T	uc001zxu.2	-	26	3223	c.3081G>A	c.(3079-3081)GGG>GGA	p.G1027G	ATP8B4_uc010ber.2_Silent_p.G900G|ATP8B4_uc010ufd.1_Silent_p.G837G|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_Silent_p.G30G	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	1027	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGGCAATGCTCCCCCAGATGA	0.383													6	52					0	0	0.000157383	0	0
ATP8B4	79895	broad.mit.edu	37	15	50212451	50212451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:50212451C>T	uc001zxu.2	-	18	2057	c.1915G>A	c.(1915-1917)GAT>AAT	p.D639N	ATP8B4_uc010ber.2_Missense_Mutation_p.D512N|ATP8B4_uc010ufd.1_Missense_Mutation_p.D449N|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	639	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		ACCATCAAATCTCTTTCAATT	0.383													11	107					0	0	0.00185496	0	0
HDC	3067	broad.mit.edu	37	15	50534864	50534864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:50534864G>A	uc001zxz.2	-	12	1688	c.1582C>T	c.(1582-1584)CGT>TGT	p.R528C	HDC_uc001zxy.2_Missense_Mutation_p.R271C|HDC_uc010uff.1_Missense_Mutation_p.R495C	NM_002112	NP_002103	P19113	DCHS_HUMAN	histidine decarboxylase	528					catecholamine biosynthetic process|histidine metabolic process		histidine decarboxylase activity			large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6		all_lung(180;0.0138)		all cancers(107;1.12e-06)|GBM - Glioblastoma multiforme(94;9.95e-05)	L-Histidine(DB00117)|Pyridoxal Phosphate(DB00114)	GCTCCCACACGCTGAGGCTGC	0.582													6	22					0	0	0.000157383	0	0
DMXL2	23312	broad.mit.edu	37	15	51773525	51773525	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:51773525G>A	uc002abf.2	-	24	6003	c.5778C>T	c.(5776-5778)TTC>TTT	p.F1926F	DMXL2_uc002abd.2_5'UTR|DMXL2_uc010ufy.1_Silent_p.F1926F|DMXL2_uc010bfa.2_Silent_p.F1290F	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1926						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TGTGAGAAATGAAGTCAGGCT	0.398													36	177					0	0	0.000692331	0	0
TMOD2	29767	broad.mit.edu	37	15	52100619	52100619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:52100619C>T	uc002abk.2	+	10	1245	c.1024C>T	c.(1024-1026)CGT>TGT	p.R342C	TMOD2_uc002abl.3_Missense_Mutation_p.R306C|TMOD2_uc010bfb.2_Missense_Mutation_p.R298C	NM_014548	NP_055363	Q9NZR1	TMOD2_HUMAN	neuronal tropomodulin isoform a	342					nervous system development	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(2)	2				all cancers(107;0.00435)		TTACCTAGTTCGTAAGAAGAG	0.363													8	50					0	0	0.000673444	0	0
WDR72	256764	broad.mit.edu	37	15	54005060	54005060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:54005060G>A	uc002acj.2	-	7	662	c.620C>T	c.(619-621)TCC>TTC	p.S207F	WDR72_uc010bfi.1_Missense_Mutation_p.S207F	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	207										lung(1)|skin(1)	2				all cancers(107;0.0511)		AAGAAACTTGGATTCTTTTTC	0.353													7	52					0	0	0.00198382	0	0
UNC13C	440279	broad.mit.edu	37	15	54305180	54305180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:54305180G>A	uc002ack.2	+	1	80	c.80G>A	c.(79-81)GGA>GAA	p.G27E		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	27					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAGAAATTGGGAAATACAAAC	0.368													10	48					0	0	0.000673444	0	0
UNC13C	440279	broad.mit.edu	37	15	54306082	54306082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:54306082G>A	uc002ack.2	+	1	982	c.982G>A	c.(982-984)GAA>AAA	p.E328K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	328					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AAATGTGACTGAAGAAAGATT	0.358													9	50					0	0	0.000274275	0	0
UNC13C	440279	broad.mit.edu	37	15	54307482	54307482	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:54307482C>T	uc002ack.2	+	1	2382	c.2382C>T	c.(2380-2382)TTC>TTT	p.F794F		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	794					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		CTTTCAGCTTCCCAAAATTTG	0.438													8	12					0	0	0.000274275	0	0
NEDD4	4734	broad.mit.edu	37	15	56132912	56132913	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:56132912_56132913GG>TT	uc002adj.2	-	16	3408_3409	c.3108_3109CC>AA	c.(3106-3111)ACCCTA>ACAATA	p.L1037I	NEDD4_uc002adl.2_Missense_Mutation_p.L618I|NEDD4_uc002adi.2_Missense_Mutation_p.L965I|NEDD4_uc010ugj.1_Missense_Mutation_p.L1021I|NEDD4_uc010bfm.2_Missense_Mutation_p.L1020I|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1037	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TTTATCTGTAGGGTATAATTGT	0.342													9	225					0	0	6.4e-05	0	0
TLN2	83660	broad.mit.edu	37	15	63092632	63092632	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:63092632G>A	uc002alb.3	+	46	6300	c.6300G>A	c.(6298-6300)AAG>AAA	p.K2100K	TLN2_uc002alc.3_Silent_p.K493K	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2100					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						GTGCTACCAAGGGAGCTGCCA	0.557													13	65					0	0	0.00185496	0	0
CILP	8483	broad.mit.edu	37	15	65491019	65491019	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:65491019C>T	uc002aon.2	-	9	1786	c.1605G>A	c.(1603-1605)GAG>GAA	p.E535E		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	535					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GCACCAGCCTCTCAGTGTCCT	0.537													4	40					0	0	0.000602214	0	0
FEM1B	10116	broad.mit.edu	37	15	68582855	68582855	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:68582855C>T	uc002arg.2	+	2	1774	c.1159C>T	c.(1159-1161)CGA>TGA	p.R387*	FEM1B_uc002arh.2_Nonsense_Mutation_p.R307*	NM_015322	NP_056137	Q9UK73	FEM1B_HUMAN	fem-1 homolog b	387					apoptosis|induction of apoptosis|regulation of DNA damage checkpoint|regulation of ubiquitin-protein ligase activity	cytoplasm|nucleus	death receptor binding|ubiquitin-protein ligase activity				0						GGATCTTCTTCGATTTGCTCA	0.398													11	64					0	0	0.00136819	0	0
ITGA11	22801	broad.mit.edu	37	15	68643055	68643055	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:68643055G>A	uc002ari.2	-	9	1047	c.960C>T	c.(958-960)ATC>ATT	p.I320I	ITGA11_uc010bib.2_Silent_p.I320I	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	320	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GGTCACTGGCGATGTATTTGA	0.507													13	41					0	0	0.00185496	0	0
PARP6	56965	broad.mit.edu	37	15	72541600	72541600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:72541600G>A	uc002auc.2	-	19	2006	c.1547C>T	c.(1546-1548)TCC>TTC	p.S516F	PARP6_uc002aua.2_Missense_Mutation_p.S362F|PARP6_uc002aub.2_Intron|PARP6_uc002aud.3_Intron|PARP6_uc002auf.1_Missense_Mutation_p.S517F	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	516	PARP catalytic.						NAD+ ADP-ribosyltransferase activity				0						GTATCCAAAGGAAATACTGGA	0.478													8	98					0	0	0.000274275	0	0
TMEM202	338949	broad.mit.edu	37	15	72699430	72699430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:72699430C>T	uc002auq.2	+	4	491	c.491C>T	c.(490-492)ACC>ATC	p.T164I	TMEM202_uc002aur.2_Intron	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	164	Helical; (Potential).					integral to membrane				central_nervous_system(1)|skin(1)	2						GTCCTAGCTACCTGCTTGCTC	0.517													13	67					0	0	0.000958276	0	0
CCDC33	80125	broad.mit.edu	37	15	74588161	74588161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:74588161G>A	uc002axo.2	+	11	1556	c.1162G>A	c.(1162-1164)GAT>AAT	p.D388N	CCDC33_uc002axp.2_Missense_Mutation_p.D210N	NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	591							protein binding			ovary(3)|skin(2)	5						CAAGATCCTGGATAAGAAGCT	0.488													6	62					0	0	0.000274275	0	0
SCAPER	49855	broad.mit.edu	37	15	76643603	76643603	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:76643603C>T	uc002bby.2	-	30	4133	c.4074G>A	c.(4072-4074)GCG>GCA	p.A1358A	SCAPER_uc010bkr.2_Silent_p.A616A|SCAPER_uc002bbx.2_Silent_p.A1112A	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	1357						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						GCTGGTTTTCCGCTTGACCTG	0.383													5	45					0	0	0.00116845	0	0
LOC645752	645752	broad.mit.edu	37	15	78207541	78207541	+	Silent	SNP	T	G	G	rs56259215	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:78207541T>G	uc010bky.2	-	18	2135	c.1371A>C	c.(1369-1371)GTA>GTC	p.V457V	LOC645752_uc010umq.1_Silent_p.V104V|uc002bcw.1_5'Flank|uc002bcx.1_5'Flank	NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						TGTCCTGCATTACAGGAGACA	0.567													7	23					0	0	0.000157383	0	0
CIB2	10518	broad.mit.edu	37	15	78403552	78403552	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:78403552G>A	uc002bdb.1	-	3	474	c.153C>T	c.(151-153)ATC>ATT	p.I51I	CIB2_uc002bdc.1_Silent_p.I8I|CIB2_uc010ums.1_Silent_p.I51I	NM_006383	NP_006374	O75838	CIB2_HUMAN	DNA-dependent protein kinase catalytic	51							calcium ion binding				0						GCACGTGGACGATGGGGCTCT	0.597													10	64					0	0	0.00185496	0	0
TMC3	342125	broad.mit.edu	37	15	81627299	81627299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:81627299C>T	uc002bgo.1	-	21	2221	c.2221G>A	c.(2221-2223)GAA>AAA	p.E741K	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	741	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						GTGCTTTCTTCCTGGGTCTGG	0.537													5	25					0	0	0.00198382	0	0
FAM154B	283726	broad.mit.edu	37	15	82574637	82574637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:82574637C>T	uc002bgv.2	+	3	500	c.431C>T	c.(430-432)CCT>CTT	p.P144L	FAM154B_uc010unr.1_Missense_Mutation_p.P129L|FAM154B_uc010uns.1_RNA	NM_001008226	NP_001008227	Q658L1	F154B_HUMAN	hypothetical protein LOC283726	144										skin(2)	2						TCTACAGCCCCTTTTAATGGT	0.398													19	149					0	0	0.00278032	0	0
AP3B2	8120	broad.mit.edu	37	15	83346866	83346866	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:83346866C>T	uc010uoh.1	-	11	1413	c.1236G>A	c.(1234-1236)CGG>CGA	p.R412R	AP3B2_uc010uoi.1_Silent_p.R412R|AP3B2_uc010uoj.1_Silent_p.R380R|AP3B2_uc010uog.1_Silent_p.R48R	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	412					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			CCTGGAATTCCCGTAGGACAG	0.587													6	38					0	0	0.00198382	0	0
SLC28A1	9154	broad.mit.edu	37	15	85478709	85478709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:85478709G>A	uc002blg.2	+	15	1743	c.1541G>A	c.(1540-1542)GGG>GAG	p.G514E	SLC28A1_uc010bnb.2_Missense_Mutation_p.G514E|SLC28A1_uc010upe.1_Intron|SLC28A1_uc010upf.1_Missense_Mutation_p.G514E|SLC28A1_uc010upg.1_Missense_Mutation_p.G514E	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	514					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CGCCTGGCAGGGGCCGAGGAG	0.612													13	70					0	0	0.00074312	0	0
NTRK3	4916	broad.mit.edu	37	15	88476248	88476248	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:88476248G>A	uc002bme.1	-	15	2046	c.1884C>T	c.(1882-1884)TTC>TTT	p.F628F	NTRK3_uc002bmh.2_Silent_p.F620F|NTRK3_uc002bmf.1_Silent_p.F628F|NTRK3_uc010upl.1_Silent_p.F530F|NTRK3_uc010bnh.1_Silent_p.F620F	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	628	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CTTACCTGAGGAACTTATTCA	0.512			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			6	26					0	0	0.000157383	0	0
MIR1179	100302235	broad.mit.edu	37	15	89151343	89151343	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:89151343G>A	hsa-mir-1179|MI0006272	+			c.6G>A																				0						TTATTGGCTGGAAAGGAAGAA	0.373													13	194					0	0	0.00074312	0	0
AEN	64782	broad.mit.edu	37	15	89172531	89172531	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:89172531C>T	uc002bmt.2	+	3	766	c.615C>T	c.(613-615)GTC>GTT	p.V205V	AEN_uc010bnm.1_Silent_p.V205V	NM_022767	NP_073604	Q8WTP8	AEN_HUMAN	interferon stimulated exonuclease gene	205	Exonuclease.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|response to ionizing radiation	nucleolus|nucleoplasm	exonuclease activity|nucleic acid binding				0						TCAAGTATGTCCACCCTCGGA	0.622													7	75					0	0	0.000274275	0	0
ACAN	176	broad.mit.edu	37	15	89400784	89400784	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:89400784C>T	uc010upo.1	+	12	5342	c.4968C>T	c.(4966-4968)TTC>TTT	p.F1656F	ACAN_uc010upp.1_Silent_p.F1656F|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1656					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CATCTGGATTCCCAACTGTTT	0.537													11	102					0	0	0.00185496	0	0
ACAN	176	broad.mit.edu	37	15	89401743	89401743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:89401743G>A	uc010upo.1	+	12	6301	c.5927G>A	c.(5926-5928)GGG>GAG	p.G1976E	ACAN_uc010upp.1_Missense_Mutation_p.G1976E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1976					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			GACATGTCTGGGGAGCATTCT	0.542													13	43					0	0	0.00136819	0	0
IQGAP1	8826	broad.mit.edu	37	15	90984747	90984747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:90984747C>T	uc002bpl.1	+	8	760	c.659C>T	c.(658-660)GCT>GTT	p.A220V		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	220					energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			GTACATGCTGCTGTTATTGCT	0.353													8	70					0	0	0.000673444	0	0
SV2B	9899	broad.mit.edu	37	15	91827361	91827361	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:91827361C>G	uc002bqv.2	+	10	2009	c.1618C>G	c.(1618-1620)CTC>GTC	p.L540V	SV2B_uc010uqv.1_Missense_Mutation_p.L389V|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	540	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			CCTGATTTACCTCGTCAGCTT	0.502													32	341					0	0	0.00128727	0	0
SV2B	9899	broad.mit.edu	37	15	91835670	91835670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:91835670C>T	uc002bqv.2	+	12	2331	c.1940C>T	c.(1939-1941)TCT>TTT	p.S647F	SV2B_uc010uqv.1_Missense_Mutation_p.S496F|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	647	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			ATCTTTGCTTCTTTTGTTGGG	0.488													65	346					0	0	0.000781405	0	0
ARRDC4	91947	broad.mit.edu	37	15	98511249	98511249	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:98511249T>C	uc010bom.2	+	4	687	c.528T>C	c.(526-528)CCT>CCC	p.P176P	ARRDC4_uc002bui.3_Silent_p.P89P	NM_183376	NP_899232	Q8NCT1	ARRD4_HUMAN	arrestin domain containing 4	176					signal transduction						0	Melanoma(26;0.00539)|Lung NSC(78;0.0125)|all_lung(78;0.0222)		OV - Ovarian serous cystadenocarcinoma(32;0.0417)			TCAAGACCCCTGTATTGAAAA	0.348													12	70					0	0	0.000566183	0	0
TARSL2	123283	broad.mit.edu	37	15	102255132	102255132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:102255132C>T	uc002bxm.2	-	4	656	c.601G>A	c.(601-603)GTC>ATC	p.V201I	TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	201					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCACCATTGACTTTGGCTATT	0.418													8	62					0	0	0.000274275	0	0
OR4F15	390649	broad.mit.edu	37	15	102358695	102358695	+	Silent	SNP	C	T	T	rs137948998		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr15:102358695C>T	uc010uts.1	+	1	306	c.306C>T	c.(304-306)TTC>TTT	p.F102F		NM_001001674	NP_001001674	Q8NGB8	O4F15_HUMAN	olfactory receptor, family 4, subfamily F,	102	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			CTCAGATCTTCTTTAGCCATG	0.448													5	62					0	0	0.00116845	0	0
RGS11	8786	broad.mit.edu	37	16	319515	319515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:319515C>T	uc002cgj.1	-	16	1279	c.1276G>A	c.(1276-1278)GAG>AAG	p.E426K	ITFG3_uc010uud.1_Intron|RGS11_uc002cgi.1_Missense_Mutation_p.E405K|RGS11_uc010bqs.1_Missense_Mutation_p.E415K|RGS11_uc002cgk.1_Missense_Mutation_p.E242K	NM_183337	NP_899180	O94810	RGS11_HUMAN	regulator of G-protein signalling 11 isoform 1	426					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			lung(1)|pancreas(1)	2		all_cancers(16;6.71e-07)|all_epithelial(16;1.59e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.00769)|all_lung(18;0.0186)				CTCTTCATCTCCAGCGGGATC	0.657													6	41					0	0	0.000157383	0	0
UBE2I	7329	broad.mit.edu	37	16	1364364	1364364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:1364364C>T	uc002clc.1	+	3	241	c.137C>T	c.(136-138)CCA>CTA	p.P46L	UBE2I_uc002cld.1_Missense_Mutation_p.P46L|UBE2I_uc002cle.1_Missense_Mutation_p.P46L|UBE2I_uc002clf.1_Missense_Mutation_p.P46L|UBE2I_uc002clg.1_Missense_Mutation_p.P46L|UBE2I_uc002clh.1_Missense_Mutation_p.P46L|UBE2I_uc002cli.1_Missense_Mutation_p.P46L	NM_194261	NP_919237	P63279	UBC9_HUMAN	ubiquitin-conjugating enzyme E2I	46					cell division|chromosome segregation|interspecies interaction between organisms|mitosis|negative regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|protein sumoylation	cytoplasm|PML body|synaptonemal complex	ATP binding|enzyme binding|ubiquitin-protein ligase activity			breast(1)|skin(1)	2		Hepatocellular(780;0.00369)				TGCGCCATTCCAGGAAAGAAA	0.572													5	32					0	0	0.00116845	0	0
C16orf73	254528	broad.mit.edu	37	16	1884340	1884340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:1884340C>T	uc002cne.2	-	13	1364	c.1246G>A	c.(1246-1248)GGA>AGA	p.G416R	FAHD1_uc002cnd.2_Intron|FAHD1_uc010brz.2_Intron|C16orf73_uc010uvq.1_Missense_Mutation_p.G445R|C16orf73_uc010uvr.1_Missense_Mutation_p.G238R	NM_152764	NP_689977	Q8N635	CP073_HUMAN	hypothetical protein LOC254528 isoform 2	416					meiosis	cytoplasm					0						ATTTTCAATCCACTCCTTGCT	0.373													10	66					0	0	0.00136819	0	0
TRAF7	84231	broad.mit.edu	37	16	2226162	2226162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:2226162C>T	uc002cow.2	+	19	1958	c.1859C>T	c.(1858-1860)TCC>TTC	p.S620F		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	620	WD 6.				activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						TTCAGTGCATCCTACGACCGG	0.682													5	20					0	0	0.00198382	0	0
THOC6	79228	broad.mit.edu	37	16	3077242	3077243	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:3077242_3077243CC>TT	uc002ctb.2	+	11	1067_1068	c.771_772CC>TT	c.(769-774)ATCCGG>ATTTGG	p.R258W	HCFC1R1_uc002csx.1_5'Flank|HCFC1R1_uc002csy.1_5'Flank|HCFC1R1_uc002csz.1_5'Flank|THOC6_uc002ctd.2_Missense_Mutation_p.R258W|THOC6_uc002ctc.2_Missense_Mutation_p.R234W|THOC6_uc002cta.2_Missense_Mutation_p.R234W	NM_024339	NP_077315	Q86W42	THOC6_HUMAN	WD repeat domain 58 isoform 1	258	WD 6.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	RNA binding			ovary(1)|central_nervous_system(1)	2						TCTTCCCCATCCGGGCGCCACA	0.639													6	42					0	0	6.4e-05	0	0
BTBD12	84464	broad.mit.edu	37	16	3633395	3633395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:3633395G>A	uc002cvp.2	-	14	5483	c.4856C>T	c.(4855-4857)CCG>CTG	p.P1619L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1619	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CTGCAACAGCGGCTGTGAGGA	0.612								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				17	64					0	0	0.00121646	0	0
CREBBP	1387	broad.mit.edu	37	16	3828033	3828034	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:3828033_3828034CC>TT	uc002cvv.2	-	10	2295_2296	c.2091_2092GG>AA	c.(2089-2094)CAGGCA>CAAACA	p.A698T	CREBBP_uc002cvw.2_Missense_Mutation_p.A660T	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	698					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		ACAGGTTGTGCCTGTGGAATCA	0.495			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				18	96					0	0	6.4e-05	0	0
ADCY9	115	broad.mit.edu	37	16	4016145	4016145	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:4016145G>A	uc002cvx.2	-	11	4232	c.3693C>T	c.(3691-3693)GTC>GTT	p.V1231V		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	1231	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						CTTTCCCCTTGACATTCACGG	0.582													10	63					0	0	0.000673444	0	0
C16orf71	146562	broad.mit.edu	37	16	4790638	4790638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:4790638G>A	uc002cxn.2	+	4	1223	c.761G>A	c.(760-762)GGA>GAA	p.G254E		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	254										central_nervous_system(1)	1						CCTCCGGAGGGACCACCAGTG	0.647													6	38					0	0	0.000157383	0	0
SEC14L5	9717	broad.mit.edu	37	16	5053535	5053535	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:5053535C>T	uc002cye.2	+	11	1443	c.1263C>T	c.(1261-1263)ATC>ATT	p.I421I		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	421	CRAL-TRIO.					integral to membrane|intracellular	transporter activity				0						GGCTGCTCATCGTGCGAGCCC	0.657													8	57					0	0	0.000442599	0	0
ALG1	56052	broad.mit.edu	37	16	5128005	5128005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:5128005C>T	uc002cym.2	+	6	768	c.727C>T	c.(727-729)CCG>TCG	p.P243S	ALG1_uc002cyj.2_Missense_Mutation_p.P132S|ALG1_uc002cyn.2_Missense_Mutation_p.P243S|ALG1_uc010bue.2_Missense_Mutation_p.P132S|ALG1_uc010uxy.1_Missense_Mutation_p.P132S	NM_019109	NP_061982	Q9BT22	ALG1_HUMAN	beta-1,4-mannosyltransferase	243	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|lipopolysaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	chitobiosyldiphosphodolichol beta-mannosyltransferase activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(90;0.0164)				CATGCACTCTCCGTTCAGGGC	0.612													10	38					0	0	0.00185496	0	0
A2BP1	54715	broad.mit.edu	37	16	7645572	7645572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:7645572G>A	uc002cys.2	+	8	1478	c.490G>A	c.(490-492)GAA>AAA	p.E164K	A2BP1_uc010buf.1_Missense_Mutation_p.E164K|A2BP1_uc002cyr.1_Missense_Mutation_p.E163K|A2BP1_uc002cyt.2_Missense_Mutation_p.E164K|A2BP1_uc010uxz.1_Missense_Mutation_p.E207K|A2BP1_uc010uya.1_Intron|A2BP1_uc002cyv.1_Missense_Mutation_p.E164K|A2BP1_uc010uyb.1_Missense_Mutation_p.E164K|A2BP1_uc002cyw.2_Missense_Mutation_p.E184K|A2BP1_uc002cyy.2_Missense_Mutation_p.E184K|A2BP1_uc002cyx.2_Missense_Mutation_p.E184K|A2BP1_uc010uyc.1_Missense_Mutation_p.E184K	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	164	RRM.				mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CGTAACTTTCGAAAATAGTGC	0.453													18	87					0	0	0.000958276	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857878	9857878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:9857878C>T	uc002czo.3	-	13	4071	c.3523G>A	c.(3523-3525)GAA>AAA	p.E1175K	GRIN2A_uc010uym.1_Missense_Mutation_p.E1175K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E1018K|GRIN2A_uc002czr.3_Missense_Mutation_p.E1175K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1175	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding	p.E1175K(1)		skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGCCCCTCTTCATTATGCAAG	0.557													23	127					0	0	0.000586117	0	0
TEKT5	146279	broad.mit.edu	37	16	10783843	10783843	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:10783843C>G	uc002czz.1	-	2	676	c.604G>C	c.(604-606)GGG>CGG	p.G202R		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	202					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						AAATCAATCCCAATCCTCTTC	0.532													9	62					0	0	0.00136819	0	0
TEKT5	146279	broad.mit.edu	37	16	10788230	10788230	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:10788230C>T	uc002czz.1	-	1	573	c.501G>A	c.(499-501)CAG>CAA	p.Q167Q		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	167	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TCTCCAAGTTCTGGTTCTCAG	0.607													16	172					0	0	0.000308642	0	0
TNFRSF17	608	broad.mit.edu	37	16	12061632	12061632	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:12061632G>A	uc002dbv.2	+	3	701	c.483G>A	c.(481-483)ACG>ACA	p.T161T	TNFRSF17_uc010buy.2_3'UTR|TNFRSF17_uc010buz.2_Silent_p.T112T	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	161	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						CCACGAAAACGAATGACTATT	0.483			T	IL2	intestinal T-cell lymphoma								17	71					0	0	0.000566183	0	0
KIAA0430	9665	broad.mit.edu	37	16	15698200	15698200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:15698200C>T	uc002ddr.2	-	22	4431	c.4238G>A	c.(4237-4239)CGA>CAA	p.R1413Q	KIAA0430_uc002ddq.2_Missense_Mutation_p.R1247Q|KIAA0430_uc010uzv.1_Missense_Mutation_p.R1409Q|KIAA0430_uc010uzw.1_Missense_Mutation_p.R1412Q	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	1412						peroxisome	nucleotide binding|RNA binding				0						AGTGAGAGATCGCAGAGACTT	0.468													14	86					0	0	0.000566183	0	0
MYH11	4629	broad.mit.edu	37	16	15853472	15853472	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:15853472G>A	uc002ddy.2	-	12	1469	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F	MYH11_uc002ddv.2_Silent_p.F461F|MYH11_uc002ddw.2_Silent_p.F454F|MYH11_uc002ddx.2_Silent_p.F461F|MYH11_uc010bvg.2_Silent_p.F286F|MYH11_uc002dea.1_Silent_p.F160F	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	454	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						GGATCCCCAGGAAGGAAGCCC	0.527			T	CBFB	AML								18	87					0	0	0.00121646	0	0
ABCC1	4363	broad.mit.edu	37	16	16130356	16130356	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:16130356C>T	uc010bvi.2	+	7	880	c.705C>T	c.(703-705)CCC>CCT	p.P235P	ABCC1_uc010bvj.2_Silent_p.P235P|ABCC1_uc010bvk.2_Silent_p.P235P|ABCC1_uc010bvl.2_Silent_p.P235P|ABCC1_uc010bvm.2_Silent_p.P235P|ABCC1_uc002del.3_Silent_p.P119P|ABCC1_uc010bvn.2_Silent_p.P98P	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	235	Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	ACCGCCAGCCCCTGGAGGGCA	0.567													9	37					0	0	0.000274275	0	0
ABCC6	368	broad.mit.edu	37	16	16256870	16256870	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:16256870G>A	uc002den.3	-	24	3523	c.3486C>T	c.(3484-3486)TTC>TTT	p.F1162F	ABCC6_uc010bvo.2_Intron	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	1162	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CCAGTCGCGGGAAACTGATCC	0.547													27	140					0	0	0.00178596	0	0
ABCC6	368	broad.mit.edu	37	16	16302616	16302616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:16302616C>T	uc002den.3	-	7	800	c.763G>A	c.(763-765)GAG>AAG	p.E255K	ABCC6_uc010bvo.2_RNA|ABCC6_uc010uzz.1_Missense_Mutation_p.E267K	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	255	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CTCATCCACTCCTTTTCAAGC	0.493													14	50					0	0	0.000422831	0	0
TMC5	79838	broad.mit.edu	37	16	19460932	19460932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:19460932G>A	uc002dgc.3	+	5	1776	c.1027G>A	c.(1027-1029)GAT>AAT	p.D343N	TMC5_uc010vaq.1_Missense_Mutation_p.D343N|TMC5_uc002dgb.3_Missense_Mutation_p.D343N|TMC5_uc010var.1_Missense_Mutation_p.D343N	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	343	Extracellular (Potential).					integral to membrane				skin(1)	1						GTCTGAATGTGATTGGCACAA	0.303													20	99					0	0	0.00152264	0	0
TMC5	79838	broad.mit.edu	37	16	19490757	19490758	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:19490757_19490758GG>TT	uc002dgc.3	+	14	2923_2924	c.2174_2175GG>TT	c.(2173-2175)TGG>TTT	p.W725F	TMC5_uc010vaq.1_Missense_Mutation_p.W673F|TMC5_uc002dgb.3_Missense_Mutation_p.W725F|TMC5_uc010var.1_Missense_Mutation_p.W725F|TMC5_uc002dgd.1_Missense_Mutation_p.W479F|TMC5_uc002dge.3_Missense_Mutation_p.W479F|TMC5_uc002dgf.3_Missense_Mutation_p.W408F|TMC5_uc002dgg.3_Missense_Mutation_p.W366F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	725	Extracellular (Potential).					integral to membrane				skin(1)	1						TTCCAGTGTTGGGAAACCCTCA	0.495													9	191					0	0	6.4e-05	0	0
UMOD	7369	broad.mit.edu	37	16	20357650	20357650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:20357650G>A	uc002dgz.2	-	5	1109	c.980C>T	c.(979-981)TCC>TTC	p.S327F	UMOD_uc002dha.2_Missense_Mutation_p.S327F|UMOD_uc002dhb.2_Missense_Mutation_p.S360F	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	327					cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						CTCCAGGAGGGAGATATCTGA	0.582													10	51					0	0	0.00244969	0	0
PDILT	204474	broad.mit.edu	37	16	20373857	20373857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:20373857C>T	uc002dhc.1	-	10	1508	c.1285G>A	c.(1285-1287)GAA>AAA	p.E429K		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	429	Thioredoxin.				cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						CTGCCCAATTCCTCCAACAGT	0.458													13	67					0	0	0.000308642	0	0
DNAH3	55567	broad.mit.edu	37	16	20966243	20966243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:20966243G>A	uc010vbe.1	-	55	10963	c.10963C>T	c.(10963-10965)CCT>TCT	p.P3655S	DNAH3_uc010vbd.1_Missense_Mutation_p.P1090S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3655	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AAGAACACAGGATCTGAGATG	0.498													20	121					0	0	0.00229938	0	0
DNAH3	55567	broad.mit.edu	37	16	20976520	20976520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:20976520G>A	uc010vbe.1	-	53	8686	c.8686C>T	c.(8686-8688)CGC>TGC	p.R2896C	DNAH3_uc010vbd.1_Missense_Mutation_p.R331C	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2896	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGGCCACGCGATCGTACACC	0.567													12	71					0	0	0.00136819	0	0
DNAH3	55567	broad.mit.edu	37	16	20986660	20986660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:20986660C>T	uc010vbe.1	-	51	8154	c.8154G>A	c.(8152-8154)ATG>ATA	p.M2718I	DNAH3_uc010vbd.1_Missense_Mutation_p.M153I	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2718	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CAATTTTCACCATCATCTTGG	0.488													22	172					0	0	0.000720815	0	0
DNAH3	55567	broad.mit.edu	37	16	20996486	20996486	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:20996486G>A	uc010vbe.1	-	48	7578	c.7578C>T	c.(7576-7578)ATC>ATT	p.I2526I	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2526	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCTTCTCCACGATGTCAGCCT	0.473													10	42					0	0	0.000978159	0	0
METTL9	51108	broad.mit.edu	37	16	21666694	21666694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:21666694G>A	uc002dje.2	+	5	1097	c.898G>A	c.(898-900)GAC>AAC	p.D300N	uc002diq.3_Intron|METTL9_uc002djf.2_Missense_Mutation_p.D299N|IGSF6_uc002djg.1_5'Flank|IGSF6_uc010vbi.1_5'Flank	NM_016025	NP_057109	Q9H1A3	METL9_HUMAN	methyltransferase like 9 isoform 1	300										ovary(1)	1				GBM - Glioblastoma multiforme(48;0.0759)		GTGTGAAGGCGACATGTATAA	0.458													12	63					0	0	0.000308642	0	0
OTOA	146183	broad.mit.edu	37	16	21747658	21747658	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:21747658T>G	uc002djh.2	+	21	2379	c.2378T>G	c.(2377-2379)TTT>TGT	p.F793C	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.F714C|OTOA_uc002dji.2_Missense_Mutation_p.F469C|OTOA_uc010vbk.1_Missense_Mutation_p.F441C	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	807					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		TGGGCTGTCTTTCAGTCTGTT	0.468													10	92					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	16	21854863	21854863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:21854863G>A	uc002djr.3	-	6	571	c.389C>T	c.(388-390)TCT>TTT	p.S130F	uc002djs.3_RNA|uc002djq.3_Missense_Mutation_p.S111F|uc010vbn.1_Missense_Mutation_p.S130F	NM_130464	NP_569731			nuclear pore complex interacting protein-like 3																		TCGAAAGGAAGAAACTCTTTT	0.433													17	285					0	0	0.000958276	0	0
SCNN1B	6338	broad.mit.edu	37	16	23379265	23379265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:23379265C>T	uc002dln.2	+	5	1041	c.865C>T	c.(865-867)CCT>TCT	p.P289S		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	289	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	TTCGGCCAACCCTGGAACTGA	0.493													7	90					0	0	0.000274275	0	0
GTF3C1	2975	broad.mit.edu	37	16	27549503	27549503	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:27549503G>A	uc002dov.1	-	3	646	c.606C>T	c.(604-606)TTC>TTT	p.F202F	GTF3C1_uc002dou.2_Silent_p.F202F	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	202						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						CCACTTACTTGAAAGCAGTGG	0.552													16	53					0	0	0.000958276	0	0
APOB48R	55911	broad.mit.edu	37	16	28507536	28507536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:28507536G>A	uc002dqb.1	+	3	1157	c.1147G>A	c.(1147-1149)GGA>AGA	p.G383R	uc010vct.1_Intron|APOB48R_uc010byg.1_5'UTR	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	383	Glu-rich.				cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GACAGAATATGGAGCAGTCCC	0.607													6	34					0	0	0.00116845	0	0
CD19	930	broad.mit.edu	37	16	28943738	28943738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:28943738C>T	uc002drs.2	+	2	222	c.160C>T	c.(160-162)CGG>TGG	p.R54W	uc010vct.1_Intron|CD19_uc010byo.1_Missense_Mutation_p.R54W	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	54	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity			ovary(2)|central_nervous_system(1)	3						GACCTGGTCTCGGGAGTCCCC	0.592													6	20					0	0	0.000157383	0	0
ITGAL	3683	broad.mit.edu	37	16	30525122	30525122	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:30525122C>T	uc002dyi.3	+	25	2993	c.2817C>T	c.(2815-2817)TTC>TTT	p.F939F	ITGAL_uc002dyj.3_Silent_p.F855F|ITGAL_uc010vev.1_Silent_p.F173F	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	939	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	ATGTCAGTTTCACCCCCAAAG	0.488													8	40					0	0	0.000442599	0	0
SRCAP	10847	broad.mit.edu	37	16	30751005	30751005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:30751005C>T	uc002dze.1	+	34	10029	c.9644C>T	c.(9643-9645)TCC>TTC	p.S3215F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S3010F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	3215					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			GCCCCTCCCTCCCTGGCTGGC	0.687													4	2					0	0	0.000602214	0	0
ZNF646	9726	broad.mit.edu	37	16	31089712	31089712	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:31089712C>T	uc002eap.2	+	2	2356	c.2067C>T	c.(2065-2067)CTC>CTT	p.L689L		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	689					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						AAGCCAAACTCCTGGCAGCGG	0.647													7	43					0	0	0.000274275	0	0
MYST1	84148	broad.mit.edu	37	16	31141467	31141467	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:31141467T>C	uc002eay.2	+	7	919	c.901T>C	c.(901-903)TAC>CAC	p.Y301H	MYST1_uc002eax.2_Missense_Mutation_p.Y301H|MYST1_uc002eaz.2_Missense_Mutation_p.Y143H|MYST1_uc002eba.2_Missense_Mutation_p.Y85H|MYST1_uc002ebb.2_RNA	NM_032188	NP_115564	Q9H7Z6	MYST1_HUMAN	MYST histone acetyltransferase 1 isoform 1	301					histone H4-K16 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex|MSL complex	histone acetyltransferase activity|metal ion binding|methylated histone residue binding|transcription factor binding			ovary(1)	1						CATTGTTGGCTACTTCTCCAA	0.602													30	146					0	0	0.000692331	0	0
MYLK3	91807	broad.mit.edu	37	16	46761279	46761279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:46761279C>T	uc002eei.3	-	8	1899	c.1783G>A	c.(1783-1785)GGT>AGT	p.G595S	MYLK3_uc010vge.1_Missense_Mutation_p.G254S|MYLK3_uc002eej.1_Missense_Mutation_p.G254S	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	595	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				AAGAGCTCACCCCCGTCCACG	0.572													4	17					0	0	0.000602214	0	0
ITFG1	81533	broad.mit.edu	37	16	47399758	47399758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:47399758G>A	uc002eet.2	-	8	805	c.743C>T	c.(742-744)ACT>ATT	p.T248I	ITFG1_uc010vgg.1_5'UTR|ITFG1_uc010vgh.1_Missense_Mutation_p.T135I	NM_030790	NP_110417	Q8TB96	TIP_HUMAN	integrin alpha FG-GAP repeat containing 1	248						extracellular region|integral to membrane				ovary(1)|central_nervous_system(1)	2		all_cancers(37;0.0613)|all_lung(18;0.0543)|Lung NSC(13;0.227)				TTCCAATATAGTACTGACAGA	0.323													14	66					0	0	0.00121646	0	0
ADCY7	113	broad.mit.edu	37	16	50346815	50346815	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:50346815G>A	uc002egd.1	+	21	2887	c.2619G>A	c.(2617-2619)CAG>CAA	p.Q873Q		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	873	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	GGTACCATCAGTCCTATGACT	0.547													8	73					0	0	0.000442599	0	0
SNX20	124460	broad.mit.edu	37	16	50707426	50707426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:50707426C>T	uc002egk.2	-	4	1015	c.842G>A	c.(841-843)GGC>GAC	p.G281D	SNX20_uc010vgp.1_Intron|SNX20_uc002egi.3_Intron	NM_182854	NP_878274	Q7Z614	SNX20_HUMAN	sorting nexin 20 isoform 1	281					cell communication|protein transport	endosome membrane|nucleus|plasma membrane	phosphatidylinositol binding|protein binding			ovary(1)	1						GAAGTCCTTGCCCAGCGCGTA	0.687													7	23					0	0	0.00198382	0	0
NOD2	64127	broad.mit.edu	37	16	50745443	50745443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:50745443C>T	uc002egm.1	+	4	1726	c.1621C>T	c.(1621-1623)CGG>TGG	p.R541W	NOD2_uc010cbk.1_Missense_Mutation_p.R514W|NOD2_uc002egl.1_Missense_Mutation_p.R319W|NOD2_uc010cbl.1_Missense_Mutation_p.R319W|NOD2_uc010cbm.1_Missense_Mutation_p.R319W|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	541	NACHT.				activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				CAGTCTTCTTCGGGGCCGCCT	0.607													6	34					0	0	0.00198382	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53652992	53652992	+	Silent	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:53652992G>C	uc002ehp.2	-	24	3625	c.3561C>G	c.(3559-3561)CCC>CCG	p.P1187P	RPGRIP1L_uc002eho.3_Silent_p.P1107P|RPGRIP1L_uc010vgy.1_Silent_p.P1141P|RPGRIP1L_uc010cbx.2_Silent_p.P1153P|RPGRIP1L_uc010vgz.1_Silent_p.P1141P	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	1187					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				GAAGTGACACGGGTGTCTCTT	0.398													5	275					0	0	0.000602214	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53679563	53679563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:53679563G>A	uc002ehp.2	-	17	2721	c.2657C>T	c.(2656-2658)TCG>TTG	p.S886L	RPGRIP1L_uc002eho.3_Missense_Mutation_p.S886L|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.S886L|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.S886L|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.S886L	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	886					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				ATGTGCCAACGAAATCAGAGG	0.328													17	261					0	0	0.00278032	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53686725	53686726	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:53686725_53686726CC>AA	uc002ehp.2	-	15	1937_1938	c.1873_1874GG>TT	c.(1873-1875)GGA>TTA	p.G625L	RPGRIP1L_uc002eho.3_Missense_Mutation_p.G625L|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.G625L|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.G625L|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.G625L	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	625	C2 1.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				CTCTTTATCTCCAGATGCCTGT	0.386													12	500					0	0	6.4e-05	0	0
SLC6A2	6530	broad.mit.edu	37	16	55703514	55703514	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:55703514C>T	uc002eif.2	+	3	423	c.312C>T	c.(310-312)ATC>ATT	p.I104I	SLC6A2_uc010ccd.2_Silent_p.I104I|SLC6A2_uc002eig.2_Silent_p.I104I|SLC6A2_uc002eih.2_Silent_p.I104I|SLC6A2_uc002eii.2_5'Flank	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	104	Helical; Name=2; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	TCCTTATCATCGCGGGGATGC	0.572													8	45					0	0	0.000157383	0	0
CES1	1066	broad.mit.edu	37	16	55860125	55860125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:55860125C>T	uc002eim.2	-	3	448	c.340G>A	c.(340-342)GAA>AAA	p.E114K	CES1_uc002eil.2_Missense_Mutation_p.E115K|CES1_uc002ein.2_Missense_Mutation_p.E114K	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	114					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity	p.E115Q(1)			0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	AGACAGTCTTCAGAAAGCTTG	0.507													23	141					0	0	0.00229938	0	0
AMFR	267	broad.mit.edu	37	16	56401394	56401394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:56401394G>A	uc002eiy.2	-	12	1766	c.1561C>T	c.(1561-1563)CCA>TCA	p.P521S	AMFR_uc002eix.2_Missense_Mutation_p.P155S	NM_001144	NP_001135	Q9UKV5	AMFR2_HUMAN	autocrine motility factor receptor	521					endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|protein oligomerization|protein polyubiquitination	integral to endoplasmic reticulum membrane|integral to membrane of membrane fraction	protein binding|protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			breast(2)	2						TCACTGCTTGGCCTTTCCACA	0.498													44	218					0	0	0.000781405	0	0
MT1H	4496	broad.mit.edu	37	16	56703804	56703804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:56703804C>T	uc002ejw.2	+	1	79	c.8C>T	c.(7-9)CCC>CTC	p.P3L	MT1G_uc002eju.1_5'Flank|MT1G_uc002ejv.1_5'Flank	NM_005951	NP_005942	P80294	MT1H_HUMAN	metallothionein 1H	3	Beta.						metal ion binding|protein binding				0						GCAATGGACCCCAACTGCTCC	0.587													8	65					0	0	0.000978159	0	0
SLC12A3	6559	broad.mit.edu	37	16	56924235	56924235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:56924235G>A	uc010ccm.2	+	19	2364	c.2335G>A	c.(2335-2337)GGA>AGA	p.G779R	SLC12A3_uc002ekd.3_Missense_Mutation_p.G779R|SLC12A3_uc010ccn.2_Missense_Mutation_p.G778R	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	779	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GATGCGGGAGGGACTCAACGT	0.517													5	27					0	0	0.00116845	0	0
NLRC5	84166	broad.mit.edu	37	16	57060688	57060688	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:57060688G>A	uc002ekk.1	+	6	2058	c.1833G>A	c.(1831-1833)AAG>AAA	p.K611K	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Silent_p.K416K|NLRC5_uc002ekl.2_Silent_p.K416K|NLRC5_uc002ekm.2_Silent_p.K416K|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	611	LRR 1.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CAGGGCCAAAGGTTGTAGAGC	0.582													4	28					0	0	0.00024832	0	0
DOK4	55715	broad.mit.edu	37	16	57507902	57507902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:57507902C>T	uc010cdb.2	-	6	947	c.649G>A	c.(649-651)GAG>AAG	p.E217K	DOK4_uc002elu.1_Missense_Mutation_p.E217K|DOK4_uc002elv.3_Missense_Mutation_p.E217K	NM_018110	NP_060580	Q8TEW6	DOK4_HUMAN	docking protein 4	217	IRS-type PTB.						insulin receptor binding			skin(1)	1						TAAATCTGCTCCCCCTCTTGT	0.597													5	36					0	0	0.000602214	0	0
GPR97	222487	broad.mit.edu	37	16	57717958	57717958	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:57717958G>A	uc002emh.2	+	9	1099	c.996G>A	c.(994-996)AAG>AAA	p.K332K	GPR97_uc010vhv.1_Silent_p.K212K|GPR97_uc010cdd.2_Intron|GPR97_uc010cde.2_Intron	NM_170776	NP_740746	Q86Y34	GPR97_HUMAN	G protein-coupled receptor 97 precursor	332	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1						GTGGCTCAAAGGGGTCTGATG	0.597													6	53					0	0	0.00198382	0	0
KIFC3	3801	broad.mit.edu	37	16	57798150	57798150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:57798150C>T	uc002emp.2	-	12	1719	c.1522G>A	c.(1522-1524)GAG>AAG	p.E508K	KIFC3_uc010vhw.1_Missense_Mutation_p.E406K|KIFC3_uc002emn.2_RNA|KIFC3_uc002emm.2_Missense_Mutation_p.E369K|KIFC3_uc010vhx.1_Missense_Mutation_p.E366K|KIFC3_uc010cdf.2_Missense_Mutation_p.E369K|KIFC3_uc002emo.3_Missense_Mutation_p.E369K|KIFC3_uc010vhy.1_Missense_Mutation_p.E450K|KIFC3_uc002emq.2_Missense_Mutation_p.E508K|KIFC3_uc010vhz.1_Missense_Mutation_p.E530K|KIFC3_uc002emr.1_Missense_Mutation_p.E285K	NM_005550	NP_005541	Q9BVG8	KIFC3_HUMAN	kinesin family member C3 isoform 1	508	Kinesin-motor.				epithelial cell-cell adhesion|microtubule-based movement|visual perception|zonula adherens maintenance	centrosome|cytoplasmic vesicle membrane|kinesin complex|microtubule|zonula adherens	ATP binding|microtubule motor activity			central_nervous_system(2)|ovary(1)	3		all_neural(199;0.224)				GCCTGCACCTCCTGGAACACC	0.642													5	14					0	0	0.000602214	0	0
EXOC3L	283849	broad.mit.edu	37	16	67220462	67220462	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:67220462C>T	uc002erx.1	-	8	1624	c.1383G>A	c.(1381-1383)AGG>AGA	p.R461R	KIAA0895L_uc002ert.2_5'Flank|KIAA0895L_uc002eru.2_5'Flank|EXOC3L_uc002erv.1_RNA|EXOC3L_uc002erw.1_Silent_p.R112R|EXOC3L_uc002ery.1_Silent_p.R363R|EXOC3L_uc010vje.1_Silent_p.R358R	NM_178516	NP_848611	Q86VI1	EX3L1_HUMAN	exocyst complex component 3-like	461					exocytosis|peptide hormone secretion	exocyst|stored secretory granule|transport vesicle					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0021)|Epithelial(162;0.0073)|all cancers(182;0.0616)		CAGCAAACCTCCTCAAGAATG	0.552													8	42					0	0	0.000673444	0	0
DPEP3	64180	broad.mit.edu	37	16	68010128	68010128	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:68010128G>A	uc002evc.3	-	9	1267	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F	DPEP3_uc010cex.2_Silent_p.F390F	NM_022357	NP_071752	Q9H4B8	DPEP3_HUMAN	dipeptidase 3 isoform a	366					meiosis	anchored to membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			breast(3)	3		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0117)|Epithelial(162;0.0481)|all cancers(182;0.236)		GCCCCTGAGGGAACCTGTGTG	0.602													6	27					0	0	0.00116845	0	0
TMCO7	79613	broad.mit.edu	37	16	68894069	68894069	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:68894069C>A	uc002ewi.3	+	2	389	c.377C>A	c.(376-378)CCG>CAG	p.P126Q	TMCO7_uc002ewh.2_Missense_Mutation_p.P126Q	NM_024562	NP_078838	Q9C0B7	TMCO7_HUMAN	transmembrane and coiled-coil domains 7	126						integral to membrane	binding				0		Ovarian(137;0.0568)		OV - Ovarian serous cystadenocarcinoma(108;0.0446)|Epithelial(162;0.198)		CCTAGGACTCCGGAAGTTGCT	0.478													6	166					0.00198382	0.00786986	0.00198382	1	0
HYDIN	54768	broad.mit.edu	37	16	70889118	70889118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:70889118G>A	uc002ezr.2	-	73	12481	c.12353C>T	c.(12352-12354)TCC>TTC	p.S4118F	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4119										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTCCTGGAAGGAAAAATCGAA	0.527													8	47					0	0	0.000673444	0	0
PMFBP1	83449	broad.mit.edu	37	16	72174465	72174465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:72174465C>T	uc002fcc.3	-	6	825	c.653G>A	c.(652-654)GGT>GAT	p.G218D	PMFBP1_uc002fcd.2_Missense_Mutation_p.G218D|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.G73D	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	218										ovary(2)	2		Ovarian(137;0.179)				TGAATGATCACCCTTGTTCTC	0.393													13	125					0	0	0.00244969	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77331282	77331282	+	Missense_Mutation	SNP	C	T	T	rs144292157		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:77331282C>T	uc002ffc.3	-	18	3124	c.2705G>A	c.(2704-2706)CGA>CAA	p.R902Q	ADAMTS18_uc010chc.1_Missense_Mutation_p.R490Q|ADAMTS18_uc002ffe.1_Missense_Mutation_p.R598Q	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	902					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						ATTTTGATCTCGCAAGCAAAT	0.383													8	122					0	0	0.000442599	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77353946	77353946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:77353946C>T	uc002ffc.3	-	16	2751	c.2332G>A	c.(2332-2334)GAA>AAA	p.E778K	ADAMTS18_uc010chc.1_Missense_Mutation_p.E366K|ADAMTS18_uc002ffe.1_Missense_Mutation_p.E474K	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	778	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TCCTGGATTTCGATGCTTCGG	0.522													17	64					0	0	0.00188189	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77387753	77387753	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:77387753C>T	uc002ffc.3	-	10	1910	c.1491G>A	c.(1489-1491)GAG>GAA	p.E497E	ADAMTS18_uc010chc.1_Silent_p.E85E|ADAMTS18_uc002ffe.1_Silent_p.E193E	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	497	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CTTGCTTGGGCTCATCCACTA	0.423													21	128					0	0	0.00047179	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77396160	77396160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:77396160C>T	uc002ffc.3	-	7	1477	c.1058G>A	c.(1057-1059)GGA>GAA	p.G353E	ADAMTS18_uc010chc.1_5'UTR|ADAMTS18_uc002ffe.1_Missense_Mutation_p.G49E|ADAMTS18_uc010vni.1_Intron	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	353	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding	p.G353E(1)		large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CAATAATCCTCCCTATGGGAA	0.408													7	40					0	0	0.000157383	0	0
CDH13	1012	broad.mit.edu	37	16	83781718	83781718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:83781718C>T	uc002fgx.2	+	11	1664	c.1544C>T	c.(1543-1545)TCT>TTT	p.S515F	CDH13_uc010vns.1_Missense_Mutation_p.S562F|CDH13_uc010vnt.1_Missense_Mutation_p.S261F|CDH13_uc010vnu.1_Missense_Mutation_p.S476F	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	515	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		TTCAGGTATTCTGTTTACAAG	0.473													25	118					0	0	0.000692331	0	0
WFDC1	58189	broad.mit.edu	37	16	84351933	84351933	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:84351933C>T	uc002fhw.2	+	3	570	c.393C>T	c.(391-393)CTC>CTT	p.L131L	WFDC1_uc002fhv.2_Silent_p.L131L	NM_021197	NP_067020	Q9HC57	WFDC1_HUMAN	WAP four-disulfide core domain 1 precursor	131					negative regulation of cell growth	extracellular space	serine-type endopeptidase inhibitor activity			breast(1)	1						ATGGCTGGCTCCTGGATGGCC	0.572													5	50					0	0	0.00116845	0	0
JPH3	57338	broad.mit.edu	37	16	87678075	87678075	+	Silent	SNP	C	T	T	rs138715600	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr16:87678075C>T	uc002fkd.2	+	2	848	c.594C>T	c.(592-594)CTC>CTT	p.L198L	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	198	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		GCTTCGTGCTCGTGGCCCACA	0.682													10	51					0	0	0.000673444	0	0
KIAA0664	23277	broad.mit.edu	37	17	2607754	2607754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:2607754G>A	uc002fuy.1	-	2	177	c.91C>T	c.(91-93)CCG>TCG	p.P31S	KIAA0664_uc002fux.1_5'Flank	NM_015229	NP_056044	O75153	K0664_HUMAN	hypothetical protein LOC23277	31							binding			breast(2)	2						TCATCTCCCGGGCCGGCCTCG	0.622													3	6					0	0	6.4e-05	0	0
OR1A2	26189	broad.mit.edu	37	17	3101680	3101680	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:3101680C>T	uc002fvd.1	+	1	868	c.868C>T	c.(868-870)CTG>TTG	p.L290L		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	290	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CATCTATAGTCTGAGAAATTG	0.453													11	87					0	0	0.000308642	0	0
ALOX15	246	broad.mit.edu	37	17	4540554	4540554	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:4540554C>T	uc002fyh.2	-	7	822	c.808_splice	c.e7-1	p.G270_splice	ALOX15_uc010vsd.1_Splice_Site_p.G231_splice|ALOX15_uc010vse.1_Splice_Site_p.G292_splice	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase						inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	GTGTGCCTCCCTGGGTGGGGG	0.498													4	30					0	0	0.00024832	0	0
NLRP1	22861	broad.mit.edu	37	17	5418809	5418809	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:5418809G>A	uc002gci.2	-	16	4641	c.4086C>T	c.(4084-4086)ATC>ATT	p.I1362I	NLRP1_uc002gcg.1_Intron|NLRP1_uc002gck.2_Silent_p.I1318I|NLRP1_uc002gcj.2_Silent_p.I1332I|NLRP1_uc002gcl.2_Silent_p.I1288I|NLRP1_uc002gch.3_Silent_p.I1318I	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	1362					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GGGCTGGAGGGATCAGAGTAG	0.512													8	43					0	0	0.000442599	0	0
NLRP1	22861	broad.mit.edu	37	17	5442759	5442759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:5442759G>A	uc002gci.2	-	7	3401	c.2846C>T	c.(2845-2847)CCT>CTT	p.P949L	NLRP1_uc002gcg.1_Missense_Mutation_p.P949L|NLRP1_uc002gck.2_Missense_Mutation_p.P949L|NLRP1_uc002gcj.2_Missense_Mutation_p.P949L|NLRP1_uc002gcl.2_Missense_Mutation_p.P949L|NLRP1_uc002gch.3_Missense_Mutation_p.P949L|NLRP1_uc010clh.2_Missense_Mutation_p.P949L	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	949					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				TTTGCAGGCAGGATGCCTGAG	0.577													4	15					0	0	0.00116845	0	0
SLC13A5	284111	broad.mit.edu	37	17	6607295	6607295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:6607295G>A	uc002gdj.2	-	4	537	c.449C>T	c.(448-450)CCC>CTC	p.P150L	SLC13A5_uc010vtf.1_Missense_Mutation_p.P150L|SLC13A5_uc010clq.2_Missense_Mutation_p.P107L|SLC13A5_uc002gdk.2_Missense_Mutation_p.P133L|SLC13A5_uc002gdl.1_Missense_Mutation_p.P132L	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	150						integral to membrane	citrate transmembrane transporter activity				0						CTCCACGATGGGCACCATCAT	0.632													5	25					0	0	0.00116845	0	0
TEKT1	83659	broad.mit.edu	37	17	6718591	6718592	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:6718591_6718592CC>TT	uc002gdt.2	-	5	629_630	c.519_520GG>AA	c.(517-522)AAGGAT>AAAAAT	p.D174N	TEKT1_uc010vth.1_Missense_Mutation_p.D28N	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	174	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				TCCTTCAAATCCTTCTCAAGAT	0.49													16	80					0	0	6.4e-05	0	0
TP53	7157	broad.mit.edu	37	17	7578478	7578479	+	Missense_Mutation	DNP	GG	AA	AA	rs28934874		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:7578478_7578479GG>AA	uc002gim.2	-	5	645_646	c.451_452CC>TT	c.(451-453)CCC>TTC	p.P151F	TP53_uc002gig.1_Missense_Mutation_p.P151F|TP53_uc002gih.2_Missense_Mutation_p.P151F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.P19F|TP53_uc010cng.1_Missense_Mutation_p.P19F|TP53_uc002gii.1_Missense_Mutation_p.P19F|TP53_uc010cnh.1_Missense_Mutation_p.P151F|TP53_uc010cni.1_Missense_Mutation_p.P151F|TP53_uc002gij.2_Missense_Mutation_p.P151F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.P58F|TP53_uc002gio.2_Missense_Mutation_p.P19F|TP53_uc010vug.1_Missense_Mutation_p.P112F	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	151	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		P -> R (in sporadic cancers; somatic mutation).|P -> A (in sporadic cancers; somatic mutation).|P -> L (in sporadic cancers; somatic mutation).|P -> H (in sporadic cancers; somatic mutation).|P -> T (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.P151S(61)|p.P151H(25)|p.P151T(13)|p.P151P(12)|p.P151A(10)|p.P152fs*18(9)|p.0?(7)|p.P151fs*30(7)|p.P151L(6)|p.P151R(6)|p.T150fs*16(3)|p.P151_V173del23(1)|p.P152_P153del(1)|p.P152fs*28(1)|p.P151del(1)|p.D148_T155delDSTPPPGT(1)|p.T150_P153delTPPP(1)|p.P58A(1)|p.P153fs*28(1)|p.D148fs*23(1)|p.P152del(1)|p.S149fs*72(1)|p.S149fs*17(1)|p.P19A(1)|p.Q144_G154del11(1)|p.P152fs*14(1)|p.T150_P151delTP(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCCGGGCGGGGGTGTGGAATCA	0.609		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			5	26					0	0	6.4e-05	0	0
TP53	7157	broad.mit.edu	37	17	7579717	7579717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:7579717G>A	uc002gim.2	-	3	273	c.79C>T	c.(79-81)CCT>TCT	p.P27S	TP53_uc002gig.1_Missense_Mutation_p.P27S|TP53_uc002gih.2_Missense_Mutation_p.P27S|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'Flank|TP53_uc010cng.1_5'Flank|TP53_uc002gii.1_5'Flank|TP53_uc010cnh.1_Missense_Mutation_p.P27S|TP53_uc010cni.1_Missense_Mutation_p.P27S|TP53_uc002gij.2_Missense_Mutation_p.P27S|TP53_uc010cnj.1_5'Flank|TP53_uc002gin.2_Missense_Mutation_p.P27S|TP53_uc002gio.2_Intron|TP53_uc010vug.1_5'UTR|TP53_uc010cnk.1_Missense_Mutation_p.P42S	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	27	Transcription activation (acidic).|Interaction with HRMT1L2.				activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.P27fs*17(3)|p.P13fs*18(1)|p.L26fs*11(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		TTGTTTTCAGGAAGTCTGAAA	0.408		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			5	28					0	0	0.000157383	0	0
ALOX12B	242	broad.mit.edu	37	17	7990680	7990680	+	Silent	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:7990680C>G	uc002gjy.1	-	1	342	c.81G>C	c.(79-81)GTG>GTC	p.V27V	hsa-mir-4314|MI0015846_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	27	PLAT.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						CTTGTGTCCCCACAATGGTCA	0.488										Multiple Myeloma(8;0.094)			4	101					0	0	0.00024832	0	0
PFAS	5198	broad.mit.edu	37	17	8169593	8169593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:8169593C>T	uc002gkr.2	+	22	2884	c.2743C>T	c.(2743-2745)CTC>TTC	p.L915F	PFAS_uc010vuv.1_Missense_Mutation_p.L491F|PFAS_uc002gks.2_5'UTR	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	915					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TGACGGAGGCCTCGTCACATG	0.602													5	46					0	0	0.000602214	0	0
MYH10	4628	broad.mit.edu	37	17	8379134	8379134	+	Silent	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:8379134G>C	uc002gll.2	-	41	6015	c.5919C>G	c.(5917-5919)CCC>CCG	p.P1973P	MYH10_uc002glm.2_Silent_p.P2004P|MYH10_uc010cnx.2_Silent_p.P1982P	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1973	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						ACTCTGACTGGGGTGGCTGCG	0.562													4	129					0	0	0.000602214	0	0
PIK3R5	23533	broad.mit.edu	37	17	8814709	8814709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:8814709C>T	uc002glt.2	-	2	170	c.103G>A	c.(103-105)GCT>ACT	p.A35T	PIK3R5_uc010vuz.1_Missense_Mutation_p.A35T|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Missense_Mutation_p.A35T|PIK3R5_uc010cob.1_Intron	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	35	Heterodimerization (By similarity).				platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TTGGACCGACCTGACCAGGAG	0.652													14	43					0	0	0.000958276	0	0
GLP2R	9340	broad.mit.edu	37	17	9739769	9739769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:9739769C>T	uc002gmd.1	+	3	359	c.359C>T	c.(358-360)TCA>TTA	p.S120L	GLP2R_uc010cog.1_RNA	NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	120	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	CCCTGCCCTTCATACTTACCT	0.448													14	127					0	0	0.00244969	0	0
MYH8	4626	broad.mit.edu	37	17	10309672	10309672	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:10309672G>A	uc002gmm.2	-	20	2309	c.2214C>T	c.(2212-2214)TTC>TTT	p.F738F	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	738	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGCTGTCAATGAACTGTCCCT	0.338									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				10	43					0	0	0.000673444	0	0
MYH4	4622	broad.mit.edu	37	17	10355449	10355449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:10355449C>T	uc002gmn.2	-	27	3658	c.3547G>A	c.(3547-3549)GAA>AAA	p.E1183K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1183	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTGGACTCTTCCAGGTCCCTG	0.582													13	48					0	0	0.000308642	0	0
MYH3	4621	broad.mit.edu	37	17	10533710	10533710	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:10533710C>T	uc002gmq.1	-	36	5429	c.5352G>A	c.(5350-5352)AAG>AAA	p.K1784K		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1784	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						CCAGGTTCTTCTTCATCCGCT	0.577													7	83					0	0	0.000157383	0	0
DNAH9	1770	broad.mit.edu	37	17	11787003	11787003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:11787003G>A	uc002gne.2	+	56	10975	c.10907G>A	c.(10906-10908)GGA>GAA	p.G3636E	DNAH9_uc010coo.2_Missense_Mutation_p.G2930E|DNAH9_uc002gnf.2_5'UTR|DNAH9_uc010vvh.1_5'Flank	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3636	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AACTTCCTGGGAGAAACAGTG	0.498													8	56					0	0	0.000157383	0	0
MYOCD	93649	broad.mit.edu	37	17	12656124	12656124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:12656124C>T	uc002gnn.2	+	10	1818	c.1519C>T	c.(1519-1521)CCT>TCT	p.P507S	MYOCD_uc002gno.2_Missense_Mutation_p.P507S|MYOCD_uc002gnp.1_Missense_Mutation_p.P411S|MYOCD_uc002gnq.2_Missense_Mutation_p.P226S	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	507	Ser-rich.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GGGCTCTGTTCCTTCTGAGCT	0.572													5	15					0	0	0.000602214	0	0
MYO15A	51168	broad.mit.edu	37	17	18030452	18030452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:18030452G>A	uc010vxh.1	+	7	4343	c.4005G>A	c.(4003-4005)ATG>ATA	p.M1335I		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1335	Myosin head-like.|Potential.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					TGGCCGCCATGAACCAGAAAC	0.567													5	26					0	0	0.00116845	0	0
WSB1	26118	broad.mit.edu	37	17	25631814	25631814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:25631814C>T	uc002gzd.1	+	4	803	c.487C>T	c.(487-489)CTC>TTC	p.L163F	WSB1_uc010vzy.1_Missense_Mutation_p.L163F|WSB1_uc010vzz.1_Missense_Mutation_p.L132F|WSB1_uc010crf.1_Missense_Mutation_p.L17F|WSB1_uc002gze.1_Missense_Mutation_p.L17F|WSB1_uc002gzf.1_RNA	NM_015626	NP_056441	Q9Y6I7	WSB1_HUMAN	WD repeat and SOCS box-containing 1 isoform 1	163	WD 2.				intracellular signal transduction	intracellular	protein binding				0	all_cancers(1;2e-13)|all_epithelial(1;4.8e-15)|Lung NSC(42;0.00152)		BRCA - Breast invasive adenocarcinoma(3;0.0152)	UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGGAAAACTCCTCCTTAACTT	0.274													10	66					0	0	0.000978159	0	0
CRYBA1	1411	broad.mit.edu	37	17	27581268	27581268	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:27581268G>A	uc002hdw.2	+	6	556	c.549G>A	c.(547-549)TTG>TTA	p.L183L		NM_005208	NP_005199	P05813	CRBA1_HUMAN	crystallin, beta A3	183	Beta/gamma crystallin 'Greek key' 4.				visual perception	soluble fraction	structural constituent of eye lens				0			BRCA - Breast invasive adenocarcinoma(11;3.3e-05)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			AGTATATCTTGGAATGTGACC	0.418													19	86					0	0	0.000958276	0	0
NUFIP2	57532	broad.mit.edu	37	17	27613951	27613951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:27613951G>A	uc002hdy.3	-	2	1150	c.1061C>T	c.(1060-1062)CCT>CTT	p.P354L	NUFIP2_uc002hdx.3_Intron	NM_020772	NP_065823	Q7Z417	NUFP2_HUMAN	nuclear fragile X mental retardation protein	354						nucleus|polysomal ribosome	protein binding|RNA binding			skin(2)|ovary(1)|breast(1)	4			BRCA - Breast invasive adenocarcinoma(11;0.000457)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			ACTTATTTTAGGAACTATTTT	0.408													22	108					0	0	0.00229938	0	0
GIT1	28964	broad.mit.edu	37	17	27909958	27909958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:27909958G>A	uc002hef.2	-	3	498	c.284C>T	c.(283-285)CCC>CTC	p.P95L	GIT1_uc002heg.2_Missense_Mutation_p.P95L|GIT1_uc010wbg.1_Missense_Mutation_p.P95L|GIT1_uc010csb.1_Missense_Mutation_p.P95L	NM_014030	NP_054749	Q9Y2X7	GIT1_HUMAN	G protein-coupled receptor kinase interactor 1	95	Arf-GAP.				regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|focal adhesion	ARF GTPase activator activity|protein binding|zinc ion binding				0				READ - Rectum adenocarcinoma(3;0.0419)|Colorectal(3;0.069)		TTTGTCTTGGGGGTTGGCTTT	0.662													4	28					0	0	0.000602214	0	0
SLC6A4	6532	broad.mit.edu	37	17	28530326	28530326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:28530326G>A	uc002hey.3	-	14	2226	c.1682C>T	c.(1681-1683)CCA>CTA	p.P561L	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	561					response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	TCGTAGTTGTGGCGGGCTCAT	0.363													10	109					0	0	0.000978159	0	0
SUZ12	23512	broad.mit.edu	37	17	30302528	30302528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:30302528C>T	uc002hgs.2	+	7	841	c.619C>T	c.(619-621)CCC>TCC	p.P207S	SUZ12_uc002hgt.2_Missense_Mutation_p.P184S	NM_015355	NP_056170	Q15022	SUZ12_HUMAN	joined to JAZF1	207					negative regulation of cell differentiation|transcription, DNA-dependent	ESC/E(Z) complex	histone methyltransferase activity|methylated histone residue binding|zinc ion binding		JAZF1/SUZ12(131)	soft_tissue(98)|endometrium(33)	131		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.041)|Ovarian(249;0.182)|Breast(31;0.231)				AAGGCAAGTTCCCACAGGTAA	0.333			T	JAZF1	endometrial stromal tumours								9	52					0	0	0.000978159	0	0
LIG3	3980	broad.mit.edu	37	17	33325259	33325259	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:33325259A>T	uc002hik.1	+	13	2041	c.1933A>T	c.(1933-1935)ATG>TTG	p.M645L	LIG3_uc002hij.2_Missense_Mutation_p.M645L	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	645					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	CTTGGCTGACATGATAACCCG	0.542								Other_BER_factors			OREG0024326	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	34					0	0	0.000308642	0	0
IKZF3	22806	broad.mit.edu	37	17	37922237	37922237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:37922237C>T	uc002hsu.2	-	8	1398	c.1336G>A	c.(1336-1338)GGG>AGG	p.G446R	IKZF3_uc002htd.2_Missense_Mutation_p.G412R|IKZF3_uc010cwd.2_Missense_Mutation_p.G303R|IKZF3_uc002hsv.2_Missense_Mutation_p.G373R|IKZF3_uc010cwe.2_Missense_Mutation_p.G312R|IKZF3_uc010cwf.2_Missense_Mutation_p.G264R|IKZF3_uc010cwg.2_Missense_Mutation_p.G225R|IKZF3_uc002hsw.2_Missense_Mutation_p.G407R|IKZF3_uc002hsx.2_Missense_Mutation_p.G390R|IKZF3_uc002hsy.2_Missense_Mutation_p.G407R|IKZF3_uc002hsz.2_Missense_Mutation_p.G351R|IKZF3_uc002hta.2_Missense_Mutation_p.G368R|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.G359R|IKZF3_uc002htc.2_Missense_Mutation_p.G199R|IKZF3_uc010wel.1_Missense_Mutation_p.G199R	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	446					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			ATCACCTCCCCTTCCTTGTTG	0.567													21	74					0	0	0.00229938	0	0
ORMDL3	94103	broad.mit.edu	37	17	38079370	38079370	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:38079370G>A	uc002htj.1	-	3	461	c.321C>T	c.(319-321)ATC>ATT	p.I107I	ORMDL3_uc002hti.1_RNA|ORMDL3_uc002htk.1_Silent_p.I107I	NM_139280	NP_644809	Q8N138	ORML3_HUMAN	ORM1-like 3	107	Helical; (Potential).				ceramide metabolic process	integral to membrane|SPOTS complex	protein binding				0	Colorectal(19;0.000442)		Lung(15;0.0234)			CTCACAGCACGATGGGTGTGA	0.622													8	47					0	0	0.000274275	0	0
CCR7	1236	broad.mit.edu	37	17	38711757	38711757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:38711757C>T	uc002huw.2	-	3	437	c.374G>A	c.(373-375)GGT>GAT	p.G125D		NM_001838	NP_001829	P32248	CCR7_HUMAN	chemokine (C-C motif) receptor 7 precursor	125	Extracellular (Potential).				cell maturation|immunological synapse formation|inflammatory response|interleukin-12 secretion|lymphocyte migration into lymph node|positive regulation of dendritic cell antigen processing and presentation|positive regulation of glycoprotein biosynthetic process|positive regulation of humoral immune response|positive regulation of hypersensitivity|positive regulation of interleukin-12 production|positive regulation of neutrophil chemotaxis|regulation of interferon-gamma production|regulation of interleukin-1 beta secretion|T cell costimulation	integral to membrane|intracellular	C-C chemokine receptor activity|chemokine (C-C motif) ligand 19 binding|chemokine (C-C motif) ligand 21 binding			breast(1)	1		Breast(137;0.000496)				AAAGTGGACACCGAAGACCCA	0.547													12	30					0	0	0.000978159	0	0
KRT39	390792	broad.mit.edu	37	17	39115106	39115106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:39115106G>A	uc002hvo.1	-	7	1259	c.1223C>T	c.(1222-1224)CCC>CTC	p.P408L	KRT39_uc010wfm.1_Missense_Mutation_p.P141L	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	408	Tail.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				TGGGTAACAGGGACGCCTAAG	0.478													11	99					0	0	0.00244969	0	0
KRTAP4-12	83755	broad.mit.edu	37	17	39279985	39279985	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:39279985G>A	uc002hwa.2	-	1	435	c.390C>T	c.(388-390)TGC>TGT	p.C130C		NM_031854	NP_114060	Q9BQ66	KR412_HUMAN	keratin associated protein 4-12	130	31 X 5 AA repeats of C-C-[GRQVIL]-[SPTR]- [VSTQPC].|24.		Missing (in allele KAP4.12-v1).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			cagactggcagcactggggtc	0.179													8	43					0	0	0.000442599	0	0
WNK4	65266	broad.mit.edu	37	17	40933268	40933268	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:40933268C>T	uc002ibj.2	+	1	573	c.552C>T	c.(550-552)TCC>TCT	p.S184S	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	184	ATP (By similarity).|Protein kinase.				intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		GACGTGGCTCCTTCAAGACGG	0.622													14	51					0	0	0.00185496	0	0
KIF18B	146909	broad.mit.edu	37	17	43006350	43006350	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:43006350G>A	uc010wji.1	-	12	1697	c.1596C>T	c.(1594-1596)TCC>TCT	p.S532S	KIF18B_uc002iht.2_Silent_p.S532S|KIF18B_uc010wjh.1_Silent_p.S520S	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				CTTGGAGCAGGGAGTACTGCC	0.582													10	34					0	0	0.00136819	0	0
MAP3K14	9020	broad.mit.edu	37	17	43364100	43364100	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:43364100G>A	uc002iiw.1	-	6	959	c.850C>T	c.(850-852)CTG>TTG	p.L284L	MAP3K14_uc010daj.1_RNA|MAP3K14_uc002iiv.1_5'UTR	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	284					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding	p.L284L(1)		central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						AGTTTGCCCAGGAAGGACTCC	0.612													4	12					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	17	45105705	45105705	+	RNA	SNP	A	G	G	rs147936028	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:45105705A>G	uc010wki.1	+	5		c.1307A>G								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		GCCTGGCACGAAATGCAGTTT	0.303													5	353					0	0	0.000602214	0	0
ITGB3	3690	broad.mit.edu	37	17	45362045	45362045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:45362045G>A	uc002ilj.2	+	4	618	c.598G>A	c.(598-600)GAA>AAA	p.E200K	ITGB3_uc002ili.1_Missense_Mutation_p.E200K|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	200	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	AGAGGCCCTCGAAAACCCCTG	0.542													22	88					0	0	0.000878237	0	0
COL1A1	1277	broad.mit.edu	37	17	48266785	48266785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:48266785G>A	uc002iqm.2	-	39	2908	c.2782C>T	c.(2782-2784)CCT>TCT	p.P928S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	928	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	GCAGGGCCAGGGGGACCAGGG	0.652			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						4	43					0	0	0.000602214	0	0
ABCC3	8714	broad.mit.edu	37	17	48741198	48741198	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:48741198C>T	uc002isl.2	+	9	1235	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I	ABCC3_uc002isk.3_Silent_p.I385I|ABCC3_uc002ism.2_Silent_p.I67I	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	385	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GTACTGGGATCATGGGTGTCA	0.552													8	28					0	0	0.000673444	0	0
KIF2B	84643	broad.mit.edu	37	17	51901483	51901483	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:51901483G>A	uc002iua.2	+	1	1245	c.1089G>A	c.(1087-1089)AAG>AAA	p.K363K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	363	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						ATGGGGGCAAGGTGTATGATT	0.473													15	72					0	0	0.000566183	0	0
AKAP1	8165	broad.mit.edu	37	17	55184485	55184485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:55184485G>A	uc002iux.2	+	2	1891	c.1660G>A	c.(1660-1662)GAC>AAC	p.D554N	AKAP1_uc010wnl.1_Missense_Mutation_p.D554N|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Missense_Mutation_p.D554N	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	554					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					GGAGTTGTCAGACTTGGGGGC	0.592													16	81					0	0	0.00121646	0	0
OR4D2	124538	broad.mit.edu	37	17	56247179	56247179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:56247179C>T	uc010wnp.1	+	1	163	c.163C>T	c.(163-165)CTC>TTC	p.L55F		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TGATTCCCAGCTCCACACACC	0.483													23	94					0	0	0.00106085	0	0
BCAS3	54828	broad.mit.edu	37	17	58885405	58885406	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:58885405_58885406CC>AA	uc002iyv.3	+	7	553_554	c.444_445CC>AA	c.(442-447)CTCCTT>CTAATT	p.L149I	BCAS3_uc010wow.1_Intron|BCAS3_uc002iyu.3_Missense_Mutation_p.L149I|BCAS3_uc002iyw.3_Missense_Mutation_p.L145I	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	149						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			AAAGACCCCTCCTTGGTGTTTG	0.327													11	339					0	0	6.4e-05	0	0
TLK2	11011	broad.mit.edu	37	17	60678136	60678136	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:60678136T>C	uc010ddp.2	+	19	2009	c.1741T>C	c.(1741-1743)TTA>CTA	p.L581L	TLK2_uc002izx.3_Silent_p.L407L|TLK2_uc002izz.3_Silent_p.L559L|TLK2_uc002jaa.3_Silent_p.L527L|TLK2_uc010wpd.1_Silent_p.L527L	NM_006852	NP_006843	Q86UE8	TLK2_HUMAN	tousled-like kinase 2 isoform A	581	Protein kinase.				cell cycle|chromatin modification|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			stomach(1)|kidney(1)	2						TTTAAAGTACTTAAATGAAAT	0.383													15	44					0	0	0.000958276	0	0
KCNH6	81033	broad.mit.edu	37	17	61611549	61611549	+	Silent	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:61611549C>A	uc002jay.2	+	5	1058	c.978C>A	c.(976-978)ACC>ACA	p.T326T	KCNH6_uc002jax.1_Silent_p.T326T|KCNH6_uc010wpl.1_Silent_p.T203T|KCNH6_uc010wpm.1_Silent_p.T326T|KCNH6_uc002jaz.1_Silent_p.T326T	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	326	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	ATGTCAACACCAATGATGAGG	0.567													8	82					0.000673444	0.00268502	0.000673444	1	0
MAP3K3	4215	broad.mit.edu	37	17	61759136	61759137	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:61759136_61759137CC>TT	uc002jbg.2	+	7	832_833	c.513_514CC>TT	c.(511-516)AACCCT>AATTCT	p.P172S	MAP3K3_uc002jbe.2_Missense_Mutation_p.P203S|MAP3K3_uc002jbf.2_Missense_Mutation_p.P203S|MAP3K3_uc002jbh.2_Missense_Mutation_p.P203S|MAP3K3_uc010wpo.1_Missense_Mutation_p.P87S|MAP3K3_uc010wpp.1_Missense_Mutation_p.P172S	NM_002401	NP_002392	Q99759	M3K3_HUMAN	mitogen-activated protein kinase kinase kinase 3	172					MAPKKK cascade|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autophosphorylation	cytosol	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			lung(3)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)	6						GCTCCCAGAACCCTGGCCGAAG	0.594													11	61					0	0	6.4e-05	0	0
ABCA8	10351	broad.mit.edu	37	17	66898986	66898986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:66898986G>A	uc002jhp.2	-	19	2691	c.2512C>T	c.(2512-2514)CTT>TTT	p.L838F	ABCA8_uc002jhq.2_Missense_Mutation_p.L878F|ABCA8_uc010wqq.1_Missense_Mutation_p.L878F|ABCA8_uc010wqr.1_Missense_Mutation_p.L817F|ABCA8_uc002jhr.2_Missense_Mutation_p.L878F	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	838	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TACTCCACAAGAAGAGGGCAA	0.388													5	88					0	0	0.00198382	0	0
CDC42EP4	23580	broad.mit.edu	37	17	71281992	71281992	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:71281992G>A	uc002jjn.2	-	2	795	c.648C>T	c.(646-648)TCC>TCT	p.S216S	CDC42EP4_uc002jjo.2_Silent_p.S216S|CDC42EP4_uc002jjp.1_Silent_p.S146S	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	216					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			CACCCAGCATGGAGGGCCCCA	0.627													10	43					0	0	0.00244969	0	0
GPRC5C	55890	broad.mit.edu	37	17	72443058	72443058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:72443058C>T	uc002jks.2	+	3	1256	c.1217C>T	c.(1216-1218)TCG>TTG	p.S406L	GPRC5C_uc002jkp.2_Missense_Mutation_p.S451L|GPRC5C_uc002jkq.2_3'UTR|GPRC5C_uc002jkr.2_Missense_Mutation_p.S418L|GPRC5C_uc002jkt.2_Missense_Mutation_p.S406L|GPRC5C_uc002jku.2_Missense_Mutation_p.S161L	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	406	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						AGTGCCAACTCGACCCTGCGG	0.607													6	47					0	0	0.00198382	0	0
FADS6	283985	broad.mit.edu	37	17	72877249	72877249	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:72877249G>A	uc002jmd.1	-	4	687	c.675C>T	c.(673-675)TTC>TTT	p.F225F	FADS6_uc010wrn.1_Intron	NM_178128	NP_835229	Q8N9I5	FADS6_HUMAN	fatty acid desaturase domain family, member 6	231					fatty acid biosynthetic process	integral to membrane	oxidoreductase activity				0	all_lung(278;0.172)|Lung NSC(278;0.207)					ATCTGGTGAGGAACATGCAGC	0.602													4	14					0	0	0.000602214	0	0
FADS6	283985	broad.mit.edu	37	17	72878830	72878830	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:72878830G>A	uc002jmd.1	-	3	380	c.368C>T	c.(367-369)GCC>GTC	p.A123V	FADS6_uc010wrn.1_Missense_Mutation_p.P40S	NM_178128	NP_835229	Q8N9I5	FADS6_HUMAN	fatty acid desaturase domain family, member 6	129	Helical; (Potential).				fatty acid biosynthetic process	integral to membrane	oxidoreductase activity				0	all_lung(278;0.172)|Lung NSC(278;0.207)					TGCAGTGAAGGCTGTGCACAC	0.612													4	12					0	0	0.00024832	0	0
ATP5H	10476	broad.mit.edu	37	17	73038683	73038683	+	Silent	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:73038683G>C	uc002jmn.1	-	2	127	c.63C>G	c.(61-63)CCC>CCG	p.P21P	KCTD2_uc010dfy.1_Intron|KCTD2_uc010dfz.2_Intron|ATP5H_uc002jmo.1_Silent_p.P21P	NM_006356	NP_006347	O75947	ATP5H_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	21					ATP catabolic process|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity				0	all_lung(278;0.226)					TTTGGTTCTGGGGTATGATCT	0.453													4	137					0	0	0.000602214	0	0
ITGB4	3691	broad.mit.edu	37	17	73725385	73725385	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:73725385C>T	uc002jpg.2	+	7	793	c.606C>T	c.(604-606)TCC>TCT	p.S202S	ITGB4_uc002jph.2_Silent_p.S202S|ITGB4_uc010dgo.2_Silent_p.S202S|ITGB4_uc002jpi.3_Silent_p.S202S|ITGB4_uc010dgp.1_Silent_p.S202S|ITGB4_uc002jpj.2_Silent_p.S202S|ITGB4_uc010wsh.1_5'Flank	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	202	VWFA.|Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CCCCCTTCTCCTTCAAGAACG	0.607													6	34					0	0	0.000274275	0	0
UNC13D	201294	broad.mit.edu	37	17	73835952	73835952	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:73835952C>T	uc002jpp.2	-	12	1403	c.1023G>A	c.(1021-1023)CAG>CAA	p.Q341Q	UNC13D_uc010wsk.1_Silent_p.Q341Q|UNC13D_uc002jpq.1_5'UTR|UNC13D_uc010dgq.1_Silent_p.Q138Q	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	341	Interaction with RAB27A.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			ATAGGTCCTTCTGTGTGGCGT	0.667									Familial_Hemophagocytic_Lymphohistiocytosis				5	59					0	0	0.00116845	0	0
EVPL	2125	broad.mit.edu	37	17	74003516	74003516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:74003516C>T	uc002jqi.2	-	22	5998	c.5770G>A	c.(5770-5772)GGC>AGC	p.G1924S	EVPL_uc010wss.1_Missense_Mutation_p.G1946S|EVPL_uc010wst.1_Missense_Mutation_p.G1394S	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1924	Globular 2.|Plectin 5.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGCATCCAGCCCTTCTGGACG	0.667													6	27					0	0	0.00116845	0	0
SLC38A10	124565	broad.mit.edu	37	17	79226063	79226063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr17:79226063G>A	uc002jzz.1	-	13	2252	c.1877C>T	c.(1876-1878)GCC>GTC	p.A626V	SLC38A10_uc002jzy.1_Missense_Mutation_p.A544V|SLC38A10_uc002kab.2_Missense_Mutation_p.A626V	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	626					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			TCCCCCCTTGGCCTTTTCCCC	0.706													9	19					0	0	0.000274275	0	0
COLEC12	81035	broad.mit.edu	37	18	335059	335059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:335059C>T	uc002kkm.2	-	6	1714	c.1499G>A	c.(1498-1500)GGA>GAA	p.G500E		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	500	Collagen-like 2.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				GCCTTTAGATCCTTTGCCGCC	0.701													9	35					0	0	0.000442599	0	0
LPIN2	9663	broad.mit.edu	37	18	2925283	2925283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:2925283G>A	uc002klo.2	-	14	2116	c.1877C>T	c.(1876-1878)CCC>CTC	p.P626L		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	626					fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		GTGGCTCAGGGGCTCTGTGGG	0.542													6	66					0	0	0.00198382	0	0
MYOM1	8736	broad.mit.edu	37	18	3119871	3119871	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:3119871G>A	uc002klp.2	-	20	3448	c.3114C>T	c.(3112-3114)GTC>GTT	p.V1038V	MYOM1_uc002klq.2_Silent_p.V942V	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1038						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GTTTACCTGGGACGGCGATGG	0.517													5	34					0	0	0.000157383	0	0
RALBP1	10928	broad.mit.edu	37	18	9522282	9522282	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:9522282G>A	uc002kob.2	+	4	1051	c.828G>A	c.(826-828)GAG>GAA	p.E276E	RALBP1_uc002koc.2_Silent_p.E276E	NM_006788	NP_006779	Q15311	RBP1_HUMAN	ralA binding protein 1	276	Rho-GAP.				chemotaxis|positive regulation of Cdc42 GTPase activity|small GTPase mediated signal transduction|transport	cytosol|membrane	ATPase activity, coupled to movement of substances|Rac GTPase activator activity|Rac GTPase binding|Ral GTPase binding			central_nervous_system(1)	1						ACCTTCCAGAGAATTTGCTTA	0.468													13	57					0	0	0.00185496	0	0
FAM38B	63895	broad.mit.edu	37	18	10681664	10681664	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:10681664C>T	uc002kor.3	-	9	1445	c.1305G>A	c.(1303-1305)AGG>AGA	p.R435R	FAM38B_uc002koq.2_Silent_p.R270R	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2478						integral to membrane	ion channel activity			ovary(1)	1						TTACGGTGTCCCTAGAAAAAG	0.403													10	93					0	0	0.00136819	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996309	19996309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:19996309C>T	uc002ktv.1	-	1	1570	c.1466G>A	c.(1465-1467)GGT>GAT	p.G489D		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	489						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TGGTGAGGGACCATATGGGGA	0.413													11	96					0	0	0.00244969	0	0
DSC1	1823	broad.mit.edu	37	18	28734748	28734748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:28734748C>T	uc002kwn.2	-	5	878	c.616G>A	c.(616-618)GAA>AAA	p.E206K	DSC1_uc002kwm.2_Missense_Mutation_p.E206K	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	206	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GCAAACTGTTCATATTTCTCA	0.328													7	27					0	0	0.000274275	0	0
DSG1	1828	broad.mit.edu	37	18	28909865	28909865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:28909865G>A	uc002kwp.2	+	5	595	c.383G>A	c.(382-384)CGA>CAA	p.R128Q		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	128	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ATCTACTGCCGAGCTCTGAAC	0.398													6	37					0	0	0.000157383	0	0
DSG4	147409	broad.mit.edu	37	18	28979385	28979385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:28979385C>T	uc002kwq.2	+	9	1291	c.1156C>T	c.(1156-1158)CAT>TAT	p.H386Y	DSG4_uc002kwr.2_Missense_Mutation_p.H386Y	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	386	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ACCTGCATTTCATCCAAGTAC	0.418													6	52					0	0	0.00198382	0	0
MEP1B	4225	broad.mit.edu	37	18	29795177	29795177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:29795177G>A	uc002kxj.3	+	12	1759	c.1712G>A	c.(1711-1713)AGA>AAA	p.R571K		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	571	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						CTGAAAAGCAGAGATTTTATA	0.373													11	55					0	0	0.000673444	0	0
FAM59A	64762	broad.mit.edu	37	18	29847906	29847906	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:29847906C>T	uc002kxl.2	-	6	2615	c.2559G>A	c.(2557-2559)GAG>GAA	p.E853E	FAM59A_uc002kxk.1_Silent_p.E852E	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	853	SAM.									ovary(1)|skin(1)	2						ATTTGAAATCCTCTGAGAGGA	0.413													4	45					0	0	0.00024832	0	0
ASXL3	80816	broad.mit.edu	37	18	31325280	31325280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:31325280G>A	uc010dmg.1	+	12	5523	c.5468G>A	c.(5467-5469)CGA>CAA	p.R1823Q	ASXL3_uc002kxq.2_Missense_Mutation_p.R1530Q	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1823					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATGAGAAAGCGAGAAAACCAC	0.478													13	122					0	0	0.000566183	0	0
DTNA	1837	broad.mit.edu	37	18	32395972	32395972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:32395972G>A	uc010dmn.1	+	6	704	c.703G>A	c.(703-705)GAA>AAA	p.E235K	DTNA_uc002kxu.2_Missense_Mutation_p.E235K|DTNA_uc010xbx.1_Intron|DTNA_uc002kxv.3_Missense_Mutation_p.E235K|DTNA_uc002kxw.2_Missense_Mutation_p.E235K|DTNA_uc002kxx.2_Missense_Mutation_p.E235K|DTNA_uc010dmj.2_Missense_Mutation_p.E235K|DTNA_uc002kxz.2_Missense_Mutation_p.E235K|DTNA_uc002kxy.2_Missense_Mutation_p.E235K|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Missense_Mutation_p.E235K|DTNA_uc002kyb.3_Missense_Mutation_p.E235K|DTNA_uc010dmm.2_Missense_Mutation_p.E235K|DTNA_uc010xby.1_5'Flank|DTNA_uc010dmo.2_5'Flank|DTNA_uc002kyd.3_5'Flank|DTNA_uc010xbz.1_5'Flank|DTNA_uc010xca.1_5'Flank|DTNA_uc002kye.2_5'Flank	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	235	Interaction with MAGEE1 (By similarity).				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						AGCAAATGTGGAAAATGGTGA	0.418													29	119					0	0	0.00178596	0	0
CELF4	56853	broad.mit.edu	37	18	34855192	34855192	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:34855192A>G	uc002lae.2	-	4	859	c.463T>C	c.(463-465)TTC>CTC	p.F155L	CELF4_uc010dnd.1_Missense_Mutation_p.F154L|CELF4_uc002lag.2_Missense_Mutation_p.F145L|CELF4_uc002laf.2_Missense_Mutation_p.F150L|CELF4_uc002lai.2_Missense_Mutation_p.F140L|CELF4_uc002lah.1_5'Flank|CELF4_uc002laj.1_5'Flank	NM_020180	NP_064565	Q9BZC1	CELF4_HUMAN	bruno-like 4, RNA binding protein isoform 1	155	Sufficient for RNA-binding and MSE- dependent splicing activity.|RRM 2.				embryo development|germ cell development|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	BRE binding|nucleotide binding|translation repressor activity, nucleic acid binding			ovary(2)	2						ATGCCCACGAAGAGTTTTCTA	0.542													10	55					0	0	0.000673444	0	0
RIT2	6014	broad.mit.edu	37	18	40323527	40323527	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:40323527C>T	uc002lav.2	-	5	758	c.585G>A	c.(583-585)CTG>CTA	p.L195L	RIT2_uc010dnf.2_3'UTR	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	195					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						CTTTTCTCTTCAGTTTCTTTT	0.423													10	104					0	0	0.000978159	0	0
RIT2	6014	broad.mit.edu	37	18	40695397	40695397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:40695397C>T	uc002lav.2	-	1	261	c.88G>A	c.(88-90)GGA>AGA	p.G30R	RIT2_uc010dnf.2_Missense_Mutation_p.G30R	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	30	GTP (By similarity).				nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						TTACCAACTCCCCCTGCTCCC	0.507													6	53					0	0	0.000442599	0	0
SYT4	6860	broad.mit.edu	37	18	40851750	40851750	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:40851750G>A	uc002law.2	-	3	1266	c.897C>T	c.(895-897)TCC>TCT	p.S299S	SYT4_uc010dng.2_RNA|SYT4_uc010xcm.1_Silent_p.S281S|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	299	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						TGTTTGTGGTGGACTGATAGC	0.393													7	45					0	0	0.000157383	0	0
MYO5B	4645	broad.mit.edu	37	18	47376027	47376027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:47376027G>A	uc002leb.2	-	32	4513	c.4225C>T	c.(4225-4227)CTT>TTT	p.L1409F	MYO5B_uc002ldz.2_5'UTR|MYO5B_uc002lea.2_Missense_Mutation_p.L524F	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1409	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AGTTCTTTAAGGTCCTGGAAG	0.512													7	79					0	0	0.000157383	0	0
MYO5B	4645	broad.mit.edu	37	18	47421394	47421394	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:47421394G>A	uc002leb.2	-	22	3250	c.2962C>T	c.(2962-2964)CTG>TTG	p.L988L	MYO5B_uc002lea.2_Silent_p.L129L	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	988	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCTGTGCGCAGGCTCTCCACC	0.612													8	41					0	0	0.000274275	0	0
DCC	1630	broad.mit.edu	37	18	50683759	50683759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:50683759C>T	uc002lfe.1	+	8	1882	c.1295C>T	c.(1294-1296)CCC>CTC	p.P432L	DCC_uc010xdr.1_Missense_Mutation_p.P280L|DCC_uc010dpf.1_Missense_Mutation_p.P87L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	432	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CCTTCGGCTCCCAGAGATGTG	0.532													21	94					0	0	0.000878237	0	0
C18orf26	284254	broad.mit.edu	37	18	52265098	52265098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:52265098C>T	uc002lfq.1	+	3	401	c.355C>T	c.(355-357)CTC>TTC	p.L119F	C18orf26_uc002lfp.1_Missense_Mutation_p.L67F	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	119	Helical; (Potential).					integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		CCTGGCTTGTCTCTTAGCCTG	0.373													7	56					0	0	0.000442599	0	0
CCDC68	80323	broad.mit.edu	37	18	52609964	52609964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:52609964G>A	uc002lfs.2	-	3	231	c.59C>T	c.(58-60)TCT>TTT	p.S20F	CCDC68_uc002lft.2_Missense_Mutation_p.S20F	NM_001143829	NP_001137301	Q9H2F9	CCD68_HUMAN	coiled-coil domain containing 68	20										skin(1)	1				Colorectal(16;0.0256)|READ - Rectum adenocarcinoma(59;0.21)		ATACAAGGCAGAATTATCTTC	0.373													5	49					0	0	0.000602214	0	0
ONECUT2	9480	broad.mit.edu	37	18	55143726	55143726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:55143726C>T	uc002lgo.2	+	2	1318	c.1286C>T	c.(1285-1287)TCC>TTC	p.S429F		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	429	Homeobox.				organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		CAGAAGAAGTCCCGCCTGGTG	0.517													4	31					0	0	0.00024832	0	0
SERPINB13	5275	broad.mit.edu	37	18	61255990	61255990	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:61255990C>T	uc002ljc.2	+	2	257	c.89C>T	c.(88-90)TCC>TTC	p.S30F	SERPINB13_uc002ljd.2_5'UTR|SERPINB13_uc010xep.1_Missense_Mutation_p.S30F|SERPINB13_uc010xeq.1_5'UTR|SERPINB13_uc010xer.1_5'UTR	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	30					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						ATCTTCTTTTCCCCTGTGGGC	0.532													7	39					0	0	0.000157383	0	0
CDH7	1005	broad.mit.edu	37	18	63548017	63548017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:63548017G>A	uc002ljz.2	+	12	2570	c.2245G>A	c.(2245-2247)GAT>AAT	p.D749N	CDH7_uc002lkb.2_Missense_Mutation_p.D749N	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	749	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CAGCTCTTTAGATTCCATCAG	0.473													11	53					0	0	0.00185496	0	0
SOCS6	9306	broad.mit.edu	37	18	67992275	67992275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:67992275C>T	uc002lkr.1	+	2	687	c.371C>T	c.(370-372)TCC>TTC	p.S124F	SOCS6_uc010dqq.2_Missense_Mutation_p.S124F	NM_004232	NP_004223	O14544	SOCS6_HUMAN	suppressor of cytokine signaling 6	124					defense response|JAK-STAT cascade|negative regulation of signal transduction|regulation of growth	cytoplasm				large_intestine(1)|lung(1)	2		Esophageal squamous(42;0.129)|Colorectal(73;0.152)				CCGATAAGGTCCACGTCGCTC	0.617													5	28					0	0	0.000602214	0	0
FBXO15	201456	broad.mit.edu	37	18	71790672	71790672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr18:71790672G>A	uc002lle.2	-	8	1177	c.841C>T	c.(841-843)CAT>TAT	p.H281Y	FBXO15_uc002llf.2_Missense_Mutation_p.H357Y	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	281										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		AGATCAACATGGAGTTGGTAG	0.438													7	50					0	0	0.000157383	0	0
PPAP2C	8612	broad.mit.edu	37	19	288022	288022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:288022G>A	uc002loi.2	-	2	301	c.202C>T	c.(202-204)CTT>TTT	p.L68F	PPAP2C_uc002loh.2_Missense_Mutation_p.L89F|PPAP2C_uc002loj.2_Missense_Mutation_p.L12F	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	68	Helical; (Potential).				sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCCTTACAAGGATGACGGTG	0.647													7	44					0	0	0.000274275	0	0
MIER2	54531	broad.mit.edu	37	19	334403	334403	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:334403G>A	uc002lok.1	-	3	249	c.240C>T	c.(238-240)TCC>TCT	p.S80S		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	80					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAAGTACCTGGGAGATGAAGT	0.572													7	77					0	0	0.000157383	0	0
PRSSL1	400668	broad.mit.edu	37	19	694959	694959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:694959C>T	uc002lpl.1	-	2	122	c.91G>A	c.(91-93)GGG>AGG	p.G31R	PRSSL1_uc010xfs.1_Missense_Mutation_p.G30R	NM_214710	NP_999875	Q6UWY2	PRS57_HUMAN	protease, serine-like 1 precursor	31					proteolysis	extracellular region	serine-type endopeptidase activity				0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCTGGGCCCCCCAGGAGCCT	0.687													3	4					0	0	0.00024832	0	0
ZNF554	115196	broad.mit.edu	37	19	2833880	2833880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:2833880C>T	uc002lwm.2	+	5	845	c.647C>T	c.(646-648)GCT>GTT	p.A216V	ZNF554_uc002lwl.2_Missense_Mutation_p.A165V	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	216					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGAGAAGGCTACTGCATGG	0.527													5	69					0	0	0.000602214	0	0
ZNF556	80032	broad.mit.edu	37	19	2873557	2873557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:2873557C>T	uc002lwp.1	+	2	154	c.67C>T	c.(67-69)CCT>TCT	p.P23S	ZNF556_uc002lwq.2_Missense_Mutation_p.P23S	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	23	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTGCTGAATCCTGCTCAGAG	0.463													15	79					0	0	0.000422831	0	0
CHAF1A	10036	broad.mit.edu	37	19	4433459	4433459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:4433459C>T	uc002mal.2	+	13	2696	c.2596C>T	c.(2596-2598)CCC>TCC	p.P866S		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	866	Binds to p60.				cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAGGGCACTCCCATCTCGCT	0.662								Chromatin_Structure					10	36					0	0	0.000978159	0	0
PLIN4	729359	broad.mit.edu	37	19	4511880	4511880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:4511880C>T	uc002mar.1	-	3	2050	c.2050G>A	c.(2050-2052)GAC>AAC	p.D684N	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	684	18.|27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane					0						GTGACTGTGTCCTTGGTGCCG	0.582													13	159					0	0	0.000422831	0	0
SEMA6B	10501	broad.mit.edu	37	19	4558105	4558105	+	Missense_Mutation	SNP	C	T	T	rs148915946		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:4558105C>T	uc010duc.1	-	2	216	c.178G>A	c.(178-180)GAA>AAA	p.E60K	SEMA6B_uc010dud.2_Missense_Mutation_p.E60K|SEMA6B_uc010xih.1_Missense_Mutation_p.E60K	NM_032108	NP_115484	Q9H3T3	SEM6B_HUMAN	semaphorin 6B precursor	60	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGCACCTTCTGCGGGGGTC	0.557													4	17					0	0	0.00116845	0	0
SAFB2	9667	broad.mit.edu	37	19	5621405	5621405	+	Silent	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:5621405C>A	uc002mcd.2	-	2	401	c.189G>T	c.(187-189)GCG>GCT	p.A63A	SAFB_uc010xiq.1_5'Flank|SAFB_uc002mcf.2_5'Flank|SAFB_uc002mcg.2_5'Flank|SAFB_uc002mce.3_5'Flank|SAFB_uc010xir.1_5'Flank|SAFB_uc010xis.1_5'Flank|SAFB_uc010xit.1_5'Flank|SAFB_uc010xiu.1_5'Flank|SAFB2_uc010xio.1_Silent_p.A63A|SAFB2_uc010xip.1_RNA	NM_014649	NP_055464	Q14151	SAFB2_HUMAN	scaffold attachment factor B2	63	SAP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|nucleotide binding|protein binding|RNA binding				0				UCEC - Uterine corpus endometrioid carcinoma (162;0.000228)		CTTCTTTAACCGCCTATTAGG	0.443													11	147					0.00185496	0.0073679	0.00185496	1	0
TMEM146	257062	broad.mit.edu	37	19	5744516	5744516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:5744516G>A	uc002mda.2	+	8	713	c.652G>A	c.(652-654)GGG>AGG	p.G218R	TMEM146_uc010duj.1_5'UTR	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	218	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGTGAATCAAGGGAAGGTAAG	0.393													14	64					0	0	0.00244969	0	0
C3	718	broad.mit.edu	37	19	6694599	6694599	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:6694599C>T	uc002mfm.2	-	24	3059	c.2997G>A	c.(2995-2997)CGG>CGA	p.R999R	C3_uc002mfl.2_5'Flank	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	999					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GGTGCTTCAGCCGTTCCGCGT	0.622													6	36					0	0	0.00198382	0	0
VAV1	7409	broad.mit.edu	37	19	6821681	6821681	+	Silent	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:6821681A>C	uc002mfu.1	+	3	467	c.370A>C	c.(370-372)AGG>CGG	p.R124R	VAV1_uc010xjh.1_Silent_p.R124R|VAV1_uc010dva.1_Silent_p.R124R|VAV1_uc002mfv.1_Silent_p.R69R	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	124					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CGCCCAGAACAGGGGGATCAT	0.647													4	21					0	0	0.00116845	0	0
TIMM44	10469	broad.mit.edu	37	19	7998984	7998984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:7998984G>A	uc002miz.2	-	5	535	c.533C>T	c.(532-534)GCC>GTC	p.A178V	TIMM44_uc002mja.2_5'UTR|TIMM44_uc010dvx.1_RNA	NM_006351	NP_006342	O43615	TIM44_HUMAN	translocase of inner mitochondrial membrane 44	178					protein targeting to mitochondrion	mitochondrial inner membrane presequence translocase complex|mitochondrial matrix	ATP binding|P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1						CTGGGAGAGGGCTCTGAAGGC	0.687													10	62					0	0	0.00185496	0	0
FBN3	84467	broad.mit.edu	37	19	8131007	8131007	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:8131007G>A	uc002mjf.2	-	63	8247	c.8226C>T	c.(8224-8226)GTC>GTT	p.V2742V	FBN3_uc002mje.2_Silent_p.V538V	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2742						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CGTTTCCGCGGACGATGACGT	0.692													7	48					0	0	0.000274275	0	0
PRAM1	84106	broad.mit.edu	37	19	8562714	8562714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:8562714C>T	uc002mkd.2	-	4	1530	c.1510G>A	c.(1510-1512)GAG>AAG	p.E504K	PRAM1_uc002mkc.2_Missense_Mutation_p.E503K	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	552							lipid binding|protein binding				0						TCGTAGATCTCATCTGGGACC	0.403													7	58					0	0	0.000274275	0	0
MYO1F	4542	broad.mit.edu	37	19	8586485	8586485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:8586485G>A	uc002mkg.2	-	28	3338	c.3224C>T	c.(3223-3225)CCC>CTC	p.P1075L		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	1075	SH3.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CCAGCCCGAGGGATCTGTGGG	0.587													6	32					0	0	0.00116845	0	0
MYO1F	4542	broad.mit.edu	37	19	8609284	8609284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:8609284C>T	uc002mkg.2	-	14	1535	c.1421G>A	c.(1420-1422)GGA>GAA	p.G474E		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	474	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CTGGTCTGCTCCCCCGCCCGT	0.672													7	19					0	0	0.00198382	0	0
MUC16	94025	broad.mit.edu	37	19	8982296	8982296	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:8982296G>A	uc002mkp.2	-	70	42183	c.41979C>T	c.(41977-41979)GAC>GAT	p.D13993D	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.D810D|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	14018	Extracellular (Potential).|SEA 13.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCAGAGGAGGTCCACCCGTG	0.537													7	32					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	8999484	8999484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:8999484C>T	uc002mkp.2	-	56	40895	c.40691G>A	c.(40690-40692)AGA>AAA	p.R13564K	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R381K|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13566	SEA 10.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGCTGCTCTCTGTCCAGTCC	0.592													10	58					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	9048281	9048281	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9048281G>T	uc002mkp.2	-	5	33554	c.33350C>A	c.(33349-33351)ACT>AAT	p.T11117N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11119	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGAAGAAAGAGTTAGAATTGG	0.507													6	27					2.0095e-06	8.05579e-06	0.00198382	1	0
MUC16	94025	broad.mit.edu	37	19	9060263	9060263	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9060263C>T	uc002mkp.2	-	3	27387	c.27183G>A	c.(27181-27183)GTG>GTA	p.V9061V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9063	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCTGGTGATCACTTCAGTGG	0.498													7	29					0	0	0.00198382	0	0
MUC16	94025	broad.mit.edu	37	19	9062517	9062517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9062517C>T	uc002mkp.2	-	3	25133	c.24929G>A	c.(24928-24930)AGG>AAG	p.R8310K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8312	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TATGCCCATCCTGTCTGTGGT	0.478													6	45					0	0	0.00116845	0	0
MUC16	94025	broad.mit.edu	37	19	9065720	9065720	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9065720G>A	uc002mkp.2	-	3	21930	c.21726C>T	c.(21724-21726)TCC>TCT	p.S7242S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7244	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGCTCAGGGAGGAAATTGACT	0.468													16	90					0	0	0.00152264	0	0
MUC16	94025	broad.mit.edu	37	19	9067238	9067238	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9067238G>A	uc002mkp.2	-	3	20412	c.20208C>T	c.(20206-20208)ATC>ATT	p.I6736I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6738	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGTTCGAGTGATGATGGTCA	0.512													25	135					0	0	0.00209593	0	0
MUC16	94025	broad.mit.edu	37	19	9068223	9068223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9068223C>T	uc002mkp.2	-	3	19427	c.19223G>A	c.(19222-19224)AGA>AAA	p.R6408K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6410	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GATGGATGTTCTGCTAGAGGA	0.483													6	64					0	0	0.000157383	0	0
MUC16	94025	broad.mit.edu	37	19	9068484	9068484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9068484G>A	uc002mkp.2	-	3	19166	c.18962C>T	c.(18961-18963)CCT>CTT	p.P6321L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6323	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTCTGAGTCAGGTGAGACAGT	0.463													9	61					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9074140	9074140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9074140G>A	uc002mkp.2	-	3	13510	c.13306C>T	c.(13306-13308)CCC>TCC	p.P4436S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4438	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACATCCTTGGGACCTTTGCTT	0.493													9	68					0	0	0.000274275	0	0
MUC16	94025	broad.mit.edu	37	19	9074822	9074822	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9074822C>T	uc002mkp.2	-	3	12828	c.12624G>A	c.(12622-12624)AGG>AGA	p.R4208R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4210	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCAAGCTTATCCTCGACATGT	0.502													6	45					0	0	0.00198382	0	0
MUC16	94025	broad.mit.edu	37	19	9088834	9088834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9088834G>A	uc002mkp.2	-	1	3185	c.2981C>T	c.(2980-2982)GCT>GTT	p.A994V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	994	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CATTACAGTAGCAGAGAGAGA	0.478													35	157					0	0	0.00128727	0	0
OR7G1	125962	broad.mit.edu	37	19	9226320	9226320	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9226320C>T	uc002mks.1	-	1	120	c.120G>A	c.(118-120)CTG>CTA	p.L40L		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						GCAGGTTCCCCAGGATGGTGA	0.473													14	62					0	0	0.00244969	0	0
ZNF317	57693	broad.mit.edu	37	19	9271050	9271050	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9271050C>T	uc002mku.2	+	7	1004	c.729C>T	c.(727-729)ATC>ATT	p.I243I	ZNF317_uc002mkv.2_Silent_p.I102I|ZNF317_uc002mkw.2_Silent_p.I211I|ZNF317_uc002mkx.2_Silent_p.I158I|ZNF317_uc002mky.2_Silent_p.I126I	NM_020933	NP_065984	Q96PQ6	ZN317_HUMAN	zinc finger protein 317	243	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACAGGAGAATCCACACCGGGG	0.552													7	49					0	0	0.000274275	0	0
OR7D4	125958	broad.mit.edu	37	19	9324983	9324983	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9324983G>A	uc002mla.1	-	1	531	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GTTCACAGAAGAAATGCGGAA	0.498													6	65					0	0	0.00198382	0	0
ZNF560	147741	broad.mit.edu	37	19	9577554	9577554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9577554C>T	uc002mlp.1	-	10	2279	c.2069G>A	c.(2068-2070)GGA>GAA	p.G690E	ZNF560_uc010dwr.1_Missense_Mutation_p.G584E	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	690					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						AAAGGAATTTCCACATGCGTT	0.373													17	141					0	0	0.00152264	0	0
ZNF426	79088	broad.mit.edu	37	19	9640053	9640053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:9640053G>A	uc002mlq.2	-	8	932	c.668C>T	c.(667-669)TCA>TTA	p.S223L	ZNF426_uc010dws.2_Missense_Mutation_p.S185L	NM_024106	NP_077011	Q9BUY5	ZN426_HUMAN	zinc finger protein 426	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACATTCAAATGACTTTTCTTG	0.373													33	152					0	0	0.00222228	0	0
CNN1	1264	broad.mit.edu	37	19	11657667	11657667	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:11657667C>T	uc002msc.1	+	4	437	c.273C>T	c.(271-273)TTC>TTT	p.F91F	CNN1_uc010xmb.1_Silent_p.F41F|CNN1_uc010xmc.1_Silent_p.F41F	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	91	CH.				actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						TCGGCAACTTCATCAAGGCCA	0.572													11	31					0	0	0.000978159	0	0
CACNA1A	773	broad.mit.edu	37	19	13565977	13565977	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:13565977G>A	uc010dze.2	-	2	579	c.343C>T	c.(343-345)CTC>TTC	p.L115F	CACNA1A_uc002mwy.3_Missense_Mutation_p.L115F	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	115	Helical; Name=S1 of repeat I; (Potential).|I.				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TCCAGTGCGAGGACGATGCAA	0.453													16	187					0	0	0.00152264	0	0
C19orf57	79173	broad.mit.edu	37	19	13993681	13993681	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:13993681G>A	uc002mxl.1	-	8	1907	c.1848C>T	c.(1846-1848)CCC>CCT	p.P616P	C19orf57_uc002mxk.1_Silent_p.P529P|C19orf57_uc002mxm.1_Silent_p.P222P	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	647					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GGTAAGGCAGGGGGGCTTTGC	0.597													9	62					0	0	0.000978159	0	0
CD97	976	broad.mit.edu	37	19	14513433	14513433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:14513433C>T	uc002myl.2	+	12	1331	c.1208C>T	c.(1207-1209)TCC>TTC	p.S403F	CD97_uc002mym.2_Missense_Mutation_p.S354F|CD97_uc002myn.2_Missense_Mutation_p.S310F	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	403	Extracellular (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						GGCATCCTCTCCATCCAGAAC	0.572													5	65					0	0	0.000602214	0	0
EMR3	84658	broad.mit.edu	37	19	14752245	14752245	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:14752245G>A	uc002mzi.3	-	10	1382	c.1234C>T	c.(1234-1236)CGA>TGA	p.R412*	EMR3_uc010dzp.2_Nonsense_Mutation_p.R360*|EMR3_uc010xnv.1_Nonsense_Mutation_p.R286*	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	412	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						GGTTCAGTTCGATCAATCCCC	0.532													7	48					0	0	0.00198382	0	0
OR7C1	26664	broad.mit.edu	37	19	14910907	14910907	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:14910907G>A	uc010xnz.1	-	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L		NM_198944	NP_945182	O76099	OR7C1_HUMAN	olfactory receptor, family 7, subfamily C,	14	Extracellular (Potential).				sensory perception of smell|spermatogenesis	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						AAAATCCCAGGAGGAGAAATT	0.443													8	135					0	0	0.000157383	0	0
NOTCH3	4854	broad.mit.edu	37	19	15284891	15284891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:15284891G>A	uc002nan.2	-	25	4800	c.4724C>T	c.(4723-4725)CCC>CTC	p.P1575L		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1575	Extracellular (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GATCACCTCGGGGGCCAGCTC	0.632													7	27					0	0	0.000274275	0	0
PGLYRP2	114770	broad.mit.edu	37	19	15586977	15586977	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:15586977G>A	uc002nbf.3	-	2	637	c.504C>T	c.(502-504)ACC>ACT	p.T168T	PGLYRP2_uc002nbg.3_Silent_p.T168T	NM_052890	NP_443122	Q96PD5	PGRP2_HUMAN	peptidoglycan recognition protein 2 precursor	168					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptide amidation|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)	3						CTGGGGAGGAGGTGGCTCTTA	0.532													7	55					0	0	0.00198382	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739142	15739142	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:15739142C>T	uc002nbi.2	+	12	1210	c.1146C>T	c.(1144-1146)ACC>ACT	p.T382T	CYP4F8_uc010xoj.1_Silent_p.T194T	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	382					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						CCTTCCTGACCATGTGCCTGA	0.617													6	84					0	0	0.00198382	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739157	15739157	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:15739157G>A	uc002nbi.2	+	12	1225	c.1161G>A	c.(1159-1161)GAG>GAA	p.E387E	CYP4F8_uc010xoj.1_Silent_p.E199E	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	387					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						GCCTGAAGGAGAGCCTGCGGT	0.617													5	75					0	0	0.00198382	0	0
CYP4F3	4051	broad.mit.edu	37	19	15758033	15758033	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:15758033G>A	uc002nbj.2	+	5	474	c.424G>A	c.(424-426)GAA>AAA	p.E142K	CYP4F3_uc010xok.1_Missense_Mutation_p.E142K|CYP4F3_uc010xol.1_Missense_Mutation_p.E142K|CYP4F3_uc010xom.1_5'UTR|CYP4F3_uc002nbk.2_Missense_Mutation_p.E142K|CYP4F3_uc010xon.1_5'Flank	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	142					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GAGTGCTGGTGAAAAGTGGAG	0.577													11	43					0	0	0.000978159	0	0
OR10H2	26538	broad.mit.edu	37	19	15839164	15839165	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:15839164_15839165CC>TT	uc002nbm.2	+	1	331_332	c.311_312CC>TT	c.(310-312)TCC>TTT	p.S104F		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					ATGTTCTTCTCCTTCAGCTTCG	0.624													4	30					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	19	15880441	15880441	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:15880441C>T	uc002nbo.2	-	8		c.1253G>A								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		TCTTGCACCTCCTGCCGGCAG	0.592													6	28					0	0	0.000157383	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025635	16025635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:16025635G>A	uc002nbu.2	-	10	1222	c.1186C>T	c.(1186-1188)CCG>TCG	p.P396S	CYP4F11_uc010eab.1_Missense_Mutation_p.P396S|CYP4F11_uc002nbt.2_Missense_Mutation_p.P396S	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	396					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GAGATGACCGGGACTGGGGGA	0.607													7	56					0	0	0.000157383	0	0
OR10H4	126541	broad.mit.edu	37	19	16060184	16060184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:16060184C>T	uc010xov.1	+	1	367	c.367C>T	c.(367-369)CGC>TGC	p.R123C		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GGGCTATGATCGCTATGTGGC	0.537													16	79					0	0	0.000566183	0	0
BST2	684	broad.mit.edu	37	19	17516154	17516154	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:17516154G>A	uc002ngl.2	-	1	240	c.231C>T	c.(229-231)GCC>GCT	p.A77A	uc010eat.1_5'Flank|uc002ngm.1_5'Flank	NM_004335	NP_004326	Q10589	BST2_HUMAN	bone marrow stromal cell antigen 2 precursor	77	Extracellular (Potential).|				B cell activation|cell proliferation|cell-cell signaling|defense response to virus|humoral immune response|innate immune response|multicellular organismal development|positive regulation of I-kappaB kinase/NF-kappaB cascade	anchored to membrane|Golgi apparatus|integral to plasma membrane|late endosome	protein homodimerization activity|signal transducer activity			ovary(3)	3						AGCCCTTCTGGGCCTCGGTCA	0.607													4	34					0	0	0.000602214	0	0
UNC13A	23025	broad.mit.edu	37	19	17720794	17720794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:17720794G>A	uc002nhd.2	-	42	5030	c.5030C>T	c.(5029-5031)TCC>TTC	p.S1677F		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1589	C2 3.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						ATTGTTCTTGGATTTGGTCGC	0.547													7	75					0	0	0.000157383	0	0
JAK3	3718	broad.mit.edu	37	19	17943659	17943659	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:17943659G>A	uc002nhn.3	-	18	2530	c.2430C>T	c.(2428-2430)GCC>GCT	p.A810A	JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Silent_p.A810A	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	810					B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						GGTCTTGGCAGGCATAGAGCT	0.627		2	Mis		acute megakaryocytic leukemia|								9	37					0	0	0.000274275	0	0
SFRS14	10147	broad.mit.edu	37	19	19112482	19112482	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:19112482G>A	uc002nkx.2	-	8	3077	c.2931C>T	c.(2929-2931)GTC>GTT	p.V977V	SFRS14_uc002nkz.1_Silent_p.V991V|SFRS14_uc002nla.1_Silent_p.V977V|SFRS14_uc002nlb.2_Silent_p.V977V|SFRS14_uc010xqk.1_Silent_p.V746V	NM_014884	NP_055699	Q8IX01	SUGP2_HUMAN	splicing factor, arginine/serine-rich 14	977					mRNA processing|RNA splicing	nucleus	RNA binding				0			OV - Ovarian serous cystadenocarcinoma(5;3.05e-05)|Epithelial(12;0.00161)			CTGGTTCATGGACTAGAAGAC	0.413													13	81					0	0	0.00185496	0	0
CILP2	148113	broad.mit.edu	37	19	19654536	19654536	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:19654536C>T	uc002nmv.3	+	8	1267	c.1182C>T	c.(1180-1182)ATC>ATT	p.I394I	CILP2_uc002nmw.3_Silent_p.I400I	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	394						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						AGTACCTGATCAAGCTCCCTG	0.667													24	131					0	0	0.00106085	0	0
GMIP	51291	broad.mit.edu	37	19	19746342	19746342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:19746342G>A	uc002nnd.2	-	15	1559	c.1442C>T	c.(1441-1443)CCC>CTC	p.P481L	GMIP_uc010xrb.1_Missense_Mutation_p.P455L|GMIP_uc010xrc.1_Missense_Mutation_p.P452L	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	481					negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						CTTCCCGAAGGGGCTGCCCAG	0.567													6	26					0	0	0.00116845	0	0
ZNF429	353088	broad.mit.edu	37	19	21719397	21719397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:21719397C>T	uc002nqd.1	+	4	679	c.542C>T	c.(541-543)TCA>TTA	p.S181L	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	181	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TGTGGCAAATCATTTTGCATG	0.313													8	53					0	0	0.000442599	0	0
ZNF208	7757	broad.mit.edu	37	19	22171598	22171598	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:22171598G>A	uc002nqp.2	-	2	266	c.117C>T	c.(115-117)AAC>AAT	p.N39N	ZNF208_uc002nqo.1_Silent_p.N39N|ZNF208_uc002nqq.2_RNA	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GGAAGACCAGGTTTCTGTAGT	0.333													10	91					0	0	0.000978159	0	0
ZNF257	113835	broad.mit.edu	37	19	22255736	22255736	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:22255736G>A	uc010ecx.2	+	2	298	c.129G>A	c.(127-129)CTG>CTA	p.L43L	ZNF257_uc010ecy.2_Silent_p.L11L	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	43	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGGTCTTCCTGGGTGAGGATA	0.353													6	95					0	0	0.000157383	0	0
ZNF681	148213	broad.mit.edu	37	19	23938318	23938318	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:23938318G>A	uc002nrk.3	-	2	181	c.39C>T	c.(37-39)TTC>TTT	p.F13F	ZNF681_uc002nrl.3_Intron|ZNF681_uc002nrj.3_Intron|ZNF681_uc002nrm.1_5'Flank	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	13	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				CCTCCAGAGAGAATTCTATGG	0.308													7	78					0	0	0.000157383	0	0
ZNF536	9745	broad.mit.edu	37	19	30936214	30936214	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:30936214T>A	uc002nsu.1	+	2	1883	c.1745T>A	c.(1744-1746)TTG>TAG	p.L582*	ZNF536_uc010edd.1_Nonsense_Mutation_p.L582*	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	582					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCTGCTGATTTGGTTCACAGC	0.512													6	70					0	0	0.00116845	0	0
ZNF536	9745	broad.mit.edu	37	19	31039827	31039827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:31039827G>A	uc002nsu.1	+	4	3439	c.3301G>A	c.(3301-3303)GAC>AAC	p.D1101N	ZNF536_uc010edd.1_Missense_Mutation_p.D1101N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1101					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGGCCACGTGGACCCTGCATT	0.542													6	61					0	0	0.00116845	0	0
KIAA0355	9710	broad.mit.edu	37	19	34810938	34810938	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:34810938A>C	uc002nvd.3	+	3	1481	c.622A>C	c.(622-624)AGC>CGC	p.S208R		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	208										ovary(1)	1	Esophageal squamous(110;0.162)					AAAAAAGAACAGCGGCAGTGG	0.572													7	71					0	0	0.00198382	0	0
KIAA0355	9710	broad.mit.edu	37	19	34833032	34833032	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:34833032C>T	uc002nvd.3	+	10	3052	c.2193C>T	c.(2191-2193)GTC>GTT	p.V731V		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	731										ovary(1)	1	Esophageal squamous(110;0.162)					AACCTCAAGTCCAATACTACC	0.642													20	89					0	0	0.000586117	0	0
UBA2	10054	broad.mit.edu	37	19	34929648	34929648	+	Silent	SNP	C	T	T	rs150396555	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:34929648C>T	uc002nvk.2	+	6	628	c.558C>T	c.(556-558)ATC>ATT	p.I186I	UBA2_uc010xrx.1_Silent_p.I59I|UBA2_uc002nvl.2_Silent_p.I90I	NM_005499	NP_005490	Q9UBT2	SAE2_HUMAN	SUMO-1 activating enzyme subunit 2	186					protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			TACATTGCATCGTTTGGGCAA	0.408													9	110					0	0	0.000673444	0	0
CD22	933	broad.mit.edu	37	19	35823687	35823687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:35823687G>A	uc010edt.2	+	3	349	c.272G>A	c.(271-273)AGG>AAG	p.R91K	CD22_uc010xst.1_5'UTR|CD22_uc010edu.2_Missense_Mutation_p.R91K|CD22_uc010edv.2_Missense_Mutation_p.R91K|CD22_uc002nzb.3_Missense_Mutation_p.R91K	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	91	Extracellular (Potential).|Ig-like V-type.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	GAGCAGAAAAGGGTGCAATTC	0.488													11	48					0	0	0.00185496	0	0
CD22	933	broad.mit.edu	37	19	35832303	35832303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:35832303G>A	uc010edt.2	+	8	1642	c.1565G>A	c.(1564-1566)GGA>GAA	p.G522E	CD22_uc010xst.1_Missense_Mutation_p.G350E|CD22_uc010edu.2_Missense_Mutation_p.G434E|CD22_uc010edv.2_Missense_Mutation_p.G522E|CD22_uc002nzb.3_Missense_Mutation_p.G345E|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	522	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	ATTCACTCTGGAAACTCGGTC	0.567													11	42					0	0	0.00185496	0	0
UPK1A	11045	broad.mit.edu	37	19	36166864	36166864	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:36166864C>T	uc002oaw.2	+	5	591	c.591C>T	c.(589-591)TTC>TTT	p.F197F	UPK1A_uc010eeh.2_Silent_p.F197F|uc002oax.1_5'Flank	NM_007000	NP_008931	O00322	UPK1A_HUMAN	uroplakin 1A	197	Extracellular (Potential).				epithelial cell differentiation|protein oligomerization	endoplasmic reticulum|integral to membrane	monosaccharide binding|protein homodimerization activity				0	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CGGGAAACTTCATCCCCCTCA	0.577													11	32					0	0	0.00244969	0	0
C19orf55	148137	broad.mit.edu	37	19	36255943	36255943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:36255943C>T	uc002obq.1	+	7	708	c.635C>T	c.(634-636)TCC>TTC	p.S212F		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	212	Ser-rich.									ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCAAAGCCTCCATCTCCTCC	0.632													17	106					0	0	0.00121646	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278905	36278905	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:36278905C>T	uc002obs.1	+	21	3040	c.2955C>T	c.(2953-2955)CCC>CCT	p.P985P	ARHGAP33_uc002obt.1_Silent_p.P982P|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Silent_p.P734P	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	1146					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						CCTGCTTTCCCCCTGACCACC	0.662													5	22					0	0	0.00116845	0	0
NPHS1	4868	broad.mit.edu	37	19	36339882	36339882	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:36339882G>A	uc002oby.2	-	8	1008	c.1008C>T	c.(1006-1008)GTC>GTT	p.V336V		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	336	Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ACTCACAGGTGACCTGCAGTG	0.602													20	89					0	0	0.00188189	0	0
KIRREL2	84063	broad.mit.edu	37	19	36349332	36349332	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:36349332A>G	uc002ocb.3	+	3	446	c.234A>G	c.(232-234)TCA>TCG	p.S78S	KIRREL2_uc002obz.3_Silent_p.S78S|KIRREL2_uc002oca.3_Silent_p.S28S|KIRREL2_uc002occ.3_Silent_p.S25S|KIRREL2_uc002ocd.3_Silent_p.S75S	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	78	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			ACTGGATATCAGGGAATGCAG	0.567													3	45					0	0	0.00116845	0	0
TYROBP	7305	broad.mit.edu	37	19	36398351	36398351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:36398351C>T	uc002ocm.2	-	3	282	c.226G>A	c.(226-228)GAG>AAG	p.E76K	TYROBP_uc002ocn.2_Missense_Mutation_p.E76K	NM_003332	NP_003323	O43914	TYOBP_HUMAN	TYRO protein tyrosine kinase binding protein	76	Cytoplasmic (Potential).				axon guidance|cell junction assembly|cellular defense response|intracellular signal transduction|regulation of immune response	integral to plasma membrane|intracellular	identical protein binding|receptor signaling protein activity				0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CACTCACCCTCCGCAGCCCCT	0.632													5	44					0	0	0.00116845	0	0
ZFP14	57677	broad.mit.edu	37	19	36831250	36831250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:36831250G>A	uc002odx.1	-	4	1571	c.1478C>T	c.(1477-1479)TCA>TTA	p.S493L	ZFP14_uc010xtd.1_Missense_Mutation_p.S494L|ZFP14_uc010eex.1_Missense_Mutation_p.S493L	NM_020917	NP_065968	Q9HCL3	ZFP14_HUMAN	zinc finger protein 14-like	493	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.162)					AGTAAGAAATGAATAAAGTCT	0.403													12	34					0	0	0.000978159	0	0
ZNF585A	199704	broad.mit.edu	37	19	37643575	37643575	+	Missense_Mutation	SNP	G	A	A	rs146470162		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:37643575G>A	uc002ofo.1	-	5	1457	c.1226C>T	c.(1225-1227)TCG>TTG	p.S409L	ZNF585A_uc002ofm.1_Missense_Mutation_p.S354L|ZNF585A_uc002ofn.1_Missense_Mutation_p.S354L	NM_199126	NP_954577	Q6P3V2	Z585A_HUMAN	zinc finger protein 585A	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GCATATATACGATTTTTCTCC	0.418													9	62					0	0	0.000442599	0	0
ZNF383	163087	broad.mit.edu	37	19	37733712	37733712	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:37733712C>T	uc002oft.1	+	8	1154	c.574C>T	c.(574-576)CAT>TAT	p.H192Y	ZNF383_uc002ofs.1_Missense_Mutation_p.H127Y|ZNF383_uc002ofu.1_Missense_Mutation_p.H192Y	NM_152604	NP_689817	Q8NA42	ZN383_HUMAN	zinc finger protein 383	192	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCAGAGAATTCATATTGGTGA	0.338													15	36					0	0	0.000422831	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38610462	38610462	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:38610462C>T	uc002ohk.2	+	9	3317	c.2808C>T	c.(2806-2808)ATC>ATT	p.I936I		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	936					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GAGACCACATCTTCCTACAGG	0.542													8	41					0	0	0.000157383	0	0
RYR1	6261	broad.mit.edu	37	19	38987049	38987049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:38987049G>A	uc002oit.2	+	41	6794	c.6664G>A	c.(6664-6666)GAG>AAG	p.E2222K	RYR1_uc002oiu.2_Missense_Mutation_p.E2222K|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2222	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCTGTCCCAGGAGATCCGCTT	0.652													4	26					0	0	0.00116845	0	0
FCGBP	8857	broad.mit.edu	37	19	40399431	40399431	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:40399431G>A	uc002omp.3	-	13	6272	c.6264C>T	c.(6262-6264)TTC>TTT	p.F2088F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2088	VWFD 5.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CTTGGAAATTGAATCGGTGCC	0.632													14	36					0	0	0.00244969	0	0
FCGBP	8857	broad.mit.edu	37	19	40424197	40424198	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:40424197_40424198TC>GT	uc002omp.3	-	4	2013_2014	c.2005_2006GA>AC	c.(2005-2007)GAG>ACG	p.E669T		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	669	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TCGGTCGCCCTCATAGTGTTGG	0.604													16	147					0	0	6.4e-05	0	0
HIPK4	147746	broad.mit.edu	37	19	40889916	40889916	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:40889916C>T	uc002onp.2	-	2	881	c.596G>A	c.(595-597)TGG>TAG	p.W199*		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	199	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			GCCCAGGGACCACACGTCCAC	0.642													5	37					0	0	0.00116845	0	0
PRX	57716	broad.mit.edu	37	19	40901315	40901315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:40901315C>T	uc002onr.2	-	7	3213	c.2944G>A	c.(2944-2946)GAG>AAG	p.E982K	PRX_uc002onq.2_Missense_Mutation_p.E843K|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	982					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGGCCTGCCTCCCCAGCCCCT	0.647													12	53					0	0	0.00244969	0	0
CYP2A6	1548	broad.mit.edu	37	19	41349779	41349779	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:41349779C>T	uc002opl.3	-	9	1428	c.1407G>A	c.(1405-1407)AAG>AAA	p.K469K		NM_000762	NP_000753	P11509	CP2A6_HUMAN	cytochrome P450, family 2, subfamily A,	469					coumarin catabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|enzyme binding|heme binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Chlorzoxazone(DB00356)|Diethylstilbestrol(DB00255)|Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Formoterol(DB00983)|Halothane(DB01159)|Letrozole(DB01006)|Methoxsalen(DB00553)|Metyrapone(DB01011)|Nicotine(DB00184)|Pilocarpine(DB01085)|Tolbutamide(DB01124)|Tranylcypromine(DB00752)	CGTCAATGTCCTTAGGTGACT	0.582													10	98					0	0	0.00136819	0	0
CYP2S1	29785	broad.mit.edu	37	19	41700470	41700470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:41700470G>A	uc002opw.2	+	2	254	c.199G>A	c.(199-201)GTG>ATG	p.V67M	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Translation_Start_Site	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	67					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						GTACGGACCGGTGTTCACCAT	0.617													7	25					0	0	0.000673444	0	0
AXL	558	broad.mit.edu	37	19	41727060	41727060	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:41727060C>T	uc010ehj.2	+	3	508	c.318C>T	c.(316-318)TCC>TCT	p.S106S	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.S106S|AXL_uc010ehk.2_Silent_p.S106S	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	106	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GAATCACCTCCCTGCAGCTTT	0.572													6	34					0	0	0.00198382	0	0
CEACAM5	1048	broad.mit.edu	37	19	42224024	42224024	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:42224024C>T	uc002ork.2	+	7	1789	c.1668C>T	c.(1666-1668)CTC>CTT	p.L556L	CEACAM5_uc002orj.1_Silent_p.L555L|CEACAM5_uc002orl.2_Silent_p.L556L	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	556	Ig-like 6.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		ACAGGACCCTCACTCTATTCA	0.527													9	93					0	0	0.000673444	0	0
GRIK5	2901	broad.mit.edu	37	19	42525627	42525627	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:42525627C>T	uc002osj.1	-	14	1733	c.1698_splice	c.e14-1	p.R566_splice	GRIK5_uc002osi.1_Splice_Site_p.R138_splice|GRIK5_uc010eib.1_Intron	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor							cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	GGGGCTCAGCCTGTGGAGAGA	0.557													3	8					0	0	6.4e-05	0	0
PSG8	440533	broad.mit.edu	37	19	43259327	43259327	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43259327C>T	uc002ouo.2	-	4	899	c.801G>A	c.(799-801)GAG>GAA	p.E267E	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_Intron|PSG8_uc002oui.2_Silent_p.E106E|PSG8_uc002ouh.2_Silent_p.E267E|PSG8_uc010ein.2_Silent_p.E145E|PSG8_uc002ouj.3_Silent_p.E49E|PSG8_uc002ouk.3_Silent_p.E106E|PSG8_uc002oul.3_Silent_p.E267E|PSG8_uc002oum.3_Silent_p.E174E|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.E174E	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	267	Ig-like C2-type 2.					extracellular region					0		Prostate(69;0.00899)				AGGTGTAGTTCTCACTCTTAG	0.483													6	123					0	0	0.000157383	0	0
PSG8	440533	broad.mit.edu	37	19	43262261	43262261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43262261G>A	uc002ouo.2	-	3	700	c.602C>T	c.(601-603)ACC>ATC	p.T201I	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG8_uc010eim.2_RNA|PSG8_uc002oui.2_Missense_Mutation_p.T40I|PSG8_uc002ouh.2_Missense_Mutation_p.T201I|PSG8_uc010ein.2_Missense_Mutation_p.T79I|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Missense_Mutation_p.T40I|PSG8_uc002oul.3_Missense_Mutation_p.T201I|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Intron	NM_182707	NP_874366	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	201	Ig-like C2-type 1.					extracellular region					0		Prostate(69;0.00899)				TAGAAAGAGGGTCCTGTTGGT	0.517													17	202					0	0	0.000566183	0	0
PSG1	5669	broad.mit.edu	37	19	43372344	43372344	+	Silent	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43372344A>T	uc002ovb.2	-	5	1290	c.1152T>A	c.(1150-1152)ATT>ATA	p.I384I	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_Intron|PSG1_uc002our.1_Silent_p.I384I|PSG1_uc010eio.1_Silent_p.I384I|PSG1_uc002oux.1_Silent_p.I313I|PSG1_uc002ouy.1_Silent_p.I291I|PSG1_uc002ouz.1_Silent_p.I384I|PSG1_uc002ova.1_Silent_p.I291I|PSG1_uc002ovc.2_Silent_p.I291I|PSG1_uc002ovd.1_Silent_p.I384I	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	384	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				GCTTTGTAGTAATATGGCGGA	0.458													36	135					0	0	0.00128727	0	0
PSG1	5669	broad.mit.edu	37	19	43376039	43376039	+	Missense_Mutation	SNP	C	T	T	rs1058692		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43376039C>T	uc002ovb.2	-	3	727	c.589G>A	c.(589-591)GAA>AAA	p.E197K	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.E197K|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG1_uc002oun.2_RNA|PSG1_uc002our.1_Missense_Mutation_p.E197K|PSG1_uc010eio.1_Missense_Mutation_p.E197K|PSG1_uc002oux.1_Missense_Mutation_p.E126K|PSG1_uc002ouy.1_Missense_Mutation_p.E197K|PSG1_uc002ouz.1_Missense_Mutation_p.E197K|PSG1_uc002ova.1_Intron|PSG1_uc002ovc.2_Intron|PSG1_uc002ovd.1_Missense_Mutation_p.E197K	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	197	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				CTGTTGGTTTCGGACAGCTTC	0.527													17	199					0	0	0.00074312	0	0
PSG6	5675	broad.mit.edu	37	19	43411133	43411133	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43411133G>A	uc002ovj.1	-	5	1233	c.1181C>T	c.(1180-1182)TCT>TTT	p.S394F	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.S401F|PSG6_uc002ovi.2_Missense_Mutation_p.S395F|PSG6_uc010xwk.1_Missense_Mutation_p.S234F|PSG11_uc002ovk.1_Missense_Mutation_p.S393F|PSG6_uc002ove.1_Missense_Mutation_p.S184F|PSG6_uc002ovf.1_Missense_Mutation_p.S301F|PSG6_uc002ovg.1_Missense_Mutation_p.S394F	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	394	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GTTACGAACAGAGCAAGCATA	0.438													38	176					0	0	0.000814825	0	0
PSG7	5676	broad.mit.edu	37	19	43430007	43430007	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43430007C>T	uc002ovl.3	-	6	1263	c.1161G>A	c.(1159-1161)AAG>AAA	p.K387K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Silent_p.K300K|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Silent_p.K113K|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Silent_p.K300K|PSG7_uc010xwl.1_Silent_p.K265K	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	387	Ig-like C2-type 3.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GCCCGCTATGCTTTGTAGTAA	0.483													11	145					0	0	0.000978159	0	0
PSG11	5680	broad.mit.edu	37	19	43519496	43519496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43519496G>A	uc002ovm.1	-	4	843	c.736C>T	c.(736-738)CCT>TCT	p.P246S	PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG11_uc002ovn.1_Missense_Mutation_p.P252S|PSG11_uc002ovo.1_Missense_Mutation_p.P124S|PSG11_uc002ovp.1_Missense_Mutation_p.P124S	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	246	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				GTGACTGAAGGGAAAATTCTG	0.468													19	103					0	0	0.00152264	0	0
PSG6	5675	broad.mit.edu	37	19	43529050	43529050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43529050G>A	uc002ovh.1	-	2	330	c.241C>T	c.(241-243)CTC>TTC	p.L81F	PSG11_uc002ouw.2_Missense_Mutation_p.L81F|PSG10_uc002ouv.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.L81F|PSG11_uc002ovm.1_Missense_Mutation_p.L75F|PSG11_uc002ovn.1_Missense_Mutation_p.L81F|PSG11_uc002ovo.1_Intron|PSG11_uc002ovp.1_Intron			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	75	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TAATGGTAGAGGTCCCTGATT	0.443													17	109					0	0	0.00229938	0	0
PSG5	5673	broad.mit.edu	37	19	43680172	43680172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43680172G>A	uc002ovu.2	-	3	690	c.559C>T	c.(559-561)CTC>TTC	p.L187F	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.L187F|PSG5_uc002ovv.2_Missense_Mutation_p.L280F|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	187	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				CTGACCGGGAGGCTCTGACCA	0.468													19	106					0	0	0.000586117	0	0
PSG5	5673	broad.mit.edu	37	19	43680251	43680251	+	Silent	SNP	C	T	T	rs138774767		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:43680251C>T	uc002ovu.2	-	3	611	c.480G>A	c.(478-480)GAG>GAA	p.E160E	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Silent_p.E160E|PSG5_uc002ovv.2_Silent_p.E253E|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	160	Ig-like C2-type 1.				female pregnancy	extracellular region		p.E160E(1)		skin(3)	3		Prostate(69;0.00899)				CATCCTTATTCTCCCTGGGTT	0.488													38	165					0	0	0.0025221	0	0
XRCC1	7515	broad.mit.edu	37	19	44065134	44065134	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:44065134C>T	uc002owt.2	-	3	303	c.183G>A	c.(181-183)GGG>GGA	p.G61G	XRCC1_uc010xwp.1_Silent_p.G30G	NM_006297	NP_006288	P18887	XRCC1_HUMAN	X-ray repair cross complementing protein 1	61					base-excision repair|single strand break repair	nucleoplasm	damaged DNA binding|protein binding			ovary(2)|lung(2)|large_intestine(1)|prostate(1)|breast(1)	7		Prostate(69;0.0153)				AGCCATCATTCCCAATGTCCA	0.577								Other_BER_factors					9	79					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	19	44503321	44503321	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:44503321C>T	uc010ejc.1	-	2		c.631G>A			uc002oya.1_RNA					Homo sapiens cDNA FLJ33234 fis, clone ASTRO2002064.																		GAAAGCAGTTCCTTTTGAGTT	0.348													9	26					0	0	0.000274275	0	0
ZNF223	7766	broad.mit.edu	37	19	44564992	44564992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:44564992C>T	uc002oyf.1	+	4	486	c.233C>T	c.(232-234)TCA>TTA	p.S78L	ZNF284_uc010ejd.2_RNA	NM_013361	NP_037493	Q9UK11	ZN223_HUMAN	zinc finger protein 223	78	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0352)				GAAGGGAATTCAGGTAAGAAG	0.328													9	117					0	0	0.000673444	0	0
ZNF234	10780	broad.mit.edu	37	19	44661953	44661953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:44661953C>T	uc002oym.2	+	6	2091	c.1784C>T	c.(1783-1785)CCC>CTC	p.P595L	ZNF234_uc002oyl.3_Missense_Mutation_p.P595L	NM_006630	NP_006621	Q14588	ZN234_HUMAN	zinc finger protein 234	595					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				GGAGAAAAACCCTATACATGT	0.483													6	64					0	0	0.00116845	0	0
ZNF227	7770	broad.mit.edu	37	19	44739314	44739314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:44739314C>T	uc002oyu.2	+	6	936	c.731C>T	c.(730-732)CCC>CTC	p.P244L	ZNF227_uc010xwu.1_Missense_Mutation_p.P193L|ZNF227_uc002oyv.2_Missense_Mutation_p.P244L|ZNF227_uc010xwv.1_Missense_Mutation_p.P193L|ZNF227_uc010xww.1_Missense_Mutation_p.P165L|ZNF227_uc002oyw.2_Missense_Mutation_p.P216L|ZNF227_uc010ejh.2_Missense_Mutation_p.P237L|ZNF235_uc002oyx.1_Intron	NM_182490	NP_872296	Q86WZ6	ZN227_HUMAN	zinc finger protein 227	244					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0435)				CAGAAATTACCCTTAGGAGAG	0.428													5	37					0	0	0.000602214	0	0
ZNF229	7772	broad.mit.edu	37	19	44933267	44933267	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:44933267C>T	uc002oze.1	-	6	2123	c.1689G>A	c.(1687-1689)CAG>CAA	p.Q563Q	ZNF229_uc010ejk.1_Silent_p.Q217Q|ZNF229_uc010ejl.1_Silent_p.Q557Q	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	563	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				TGTGGACCCTCTGATGGATGT	0.567													6	43					0	0	0.00116845	0	0
CEACAM20	125931	broad.mit.edu	37	19	45021226	45021226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:45021226C>T	uc010ejn.1	-	6	1106	c.1090G>A	c.(1090-1092)GAG>AAG	p.E364K	CEACAM20_uc010ejo.1_Missense_Mutation_p.E364K|CEACAM20_uc010ejp.1_Intron|CEACAM20_uc010ejq.1_Intron	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	364	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				AGCTCTGCCTCTATGGTGCTG	0.577													29	186					0	0	0.000692331	0	0
CEACAM20	125931	broad.mit.edu	37	19	45029134	45029134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:45029134C>T	uc010ejn.1	-	2	212	c.196G>A	c.(196-198)GAG>AAG	p.E66K	CEACAM20_uc010ejo.1_Missense_Mutation_p.E66K|CEACAM20_uc010ejp.1_Missense_Mutation_p.E66K|CEACAM20_uc010ejq.1_Missense_Mutation_p.E66K	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	66	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TGGCCCCTACCTCTGGATCTG	0.547													38	142					0	0	0.00148497	0	0
CEACAM20	125931	broad.mit.edu	37	19	45029212	45029212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:45029212C>T	uc010ejn.1	-	2	134	c.118G>A	c.(118-120)GAT>AAT	p.D40N	CEACAM20_uc010ejo.1_Missense_Mutation_p.D40N|CEACAM20_uc010ejp.1_Missense_Mutation_p.D40N|CEACAM20_uc010ejq.1_Missense_Mutation_p.D40N	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	40	Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TGGGTGGCATCAAGTGGGTTG	0.572													15	360					0	0	0.00074312	0	0
RSPH6A	81492	broad.mit.edu	37	19	46307795	46307795	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:46307795C>T	uc002pdm.2	-	3	1511	c.1368G>A	c.(1366-1368)AAG>AAA	p.K456K	RSPH6A_uc002pdl.2_Silent_p.K192K	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	456						intracellular				ovary(1)|central_nervous_system(1)	2						TGAAGAACTTCTTGATCTTTC	0.617													9	59					0	0	0.000673444	0	0
FOXA3	3171	broad.mit.edu	37	19	46375569	46375569	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:46375569G>A	uc002pdr.2	+	2	503	c.306G>A	c.(304-306)GGG>GGA	p.G102G		NM_004497	NP_004488	P55318	FOXA3_HUMAN	forkhead box A3	102					brain development|cellular glucose homeostasis|cellular response to starvation|chromatin modification|embryo development|endocrine pancreas development|negative regulation of cell proliferation|neural plate anterior/posterior regionalization|neuron fate specification|positive regulation of hepatocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|spermatogenesis	transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(1)	1		Ovarian(192;0.0308)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00453)|GBM - Glioblastoma multiforme(486;0.0518)|Epithelial(262;0.236)		TGGTGCACGGGAAGGAGATGC	0.687													5	12					0	0	0.000602214	0	0
IGFL3	388555	broad.mit.edu	37	19	46623587	46623587	+	Nonstop_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:46623587T>A	uc002pea.1	-	4	403	c.378A>T	c.(376-378)TAA>TAT	p.*126Y		NM_207393	NP_997276	Q6UXB1	IGFL3_HUMAN	IGF-like family member 3 precursor	126						extracellular region	protein binding				0		Ovarian(192;0.0175)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00473)|GBM - Glioblastoma multiforme(486;0.0149)|Epithelial(262;0.239)		cctggggtttttatgggtaca	0.08													6	55					0	0	0.00116845	0	0
GRLF1	2909	broad.mit.edu	37	19	47423618	47423618	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:47423618C>A	uc010ekv.2	+	1	1686	c.1686C>A	c.(1684-1686)TGC>TGA	p.C562*		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	562					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		GCCCCAGCTGCCCAGCTTGTG	0.458													9	103					5.4927e-09	2.2066e-08	0.000274275	1	0
CRX	1406	broad.mit.edu	37	19	48342764	48342765	+	Missense_Mutation	DNP	CC	TT	TT	rs147422878		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:48342764_48342765CC>TT	uc002phq.3	+	4	644_645	c.440_441CC>TT	c.(439-441)CCC>CTT	p.P147L		NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	147			Missing (in LCA7).		organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		CCCCCTCTGCCCGGCCCCTCAG	0.673													8	45					0	0	6.4e-05	0	0
SYNGR4	23546	broad.mit.edu	37	19	48878892	48878892	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:48878892C>T	uc002piz.2	+	4	599	c.354C>T	c.(352-354)TTC>TTT	p.F118F		NM_012451	NP_036583	O95473	SNG4_HUMAN	synaptogyrin 4	118	MARVEL.|Helical; (Potential).					integral to membrane					0		all_epithelial(76;5.08e-07)|all_lung(116;5.76e-06)|Lung NSC(112;1.18e-05)|Prostate(7;0.0143)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000138)|all cancers(93;0.00017)|Epithelial(262;0.0138)|GBM - Glioblastoma multiforme(486;0.0146)		TTGTCTGGTTCATGGGTTTCT	0.602													7	48					0	0	0.00198382	0	0
GRWD1	83743	broad.mit.edu	37	19	48953670	48953670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:48953670C>T	uc002pjd.2	+	4	802	c.569C>T	c.(568-570)CCC>CTC	p.P190L		NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	190						nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		GTGGAGGAGCCCCAGGCCCTG	0.642													9	54					0	0	0.000274275	0	0
IZUMO1	284359	broad.mit.edu	37	19	49248954	49248954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:49248954C>T	uc002pkj.2	-	2	711	c.163G>A	c.(163-165)GAA>AAA	p.E55K	IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	55	Extracellular (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		TCTACCCTTTCCATCATGGCT	0.547													11	79					0	0	0.00185496	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49341375	49341375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:49341375G>A	uc002pkx.2	-	19	2527	c.1976C>T	c.(1975-1977)ACC>ATC	p.T659I	HSD17B14_uc002pkv.1_5'Flank|HSD17B14_uc010emk.1_5'Flank|PLEKHA4_uc002pkw.1_Silent_p.H154H|PLEKHA4_uc010eml.2_Silent_p.H560H	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	659						cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		GTAAGGGGTGGTGTTCCTTGG	0.338													9	39					0	0	0.000442599	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169104	50169104	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:50169104C>T	uc002ppa.2	+	1	706	c.24C>T	c.(22-24)TTC>TTT	p.F8F	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'UTR|IRF3_uc002pox.1_5'UTR|IRF3_uc002poy.1_5'UTR|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'UTR|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Silent_p.F8F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	8					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CTGGGCTGTTCCCGCCCCTAT	0.542													13	62					0	0	0.00244969	0	0
VRK3	51231	broad.mit.edu	37	19	50498464	50498464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:50498464G>A	uc002prg.2	-	8	846	c.748C>T	c.(748-750)CAC>TAC	p.H250Y	VRK3_uc002prh.1_Missense_Mutation_p.H250Y|VRK3_uc002pri.1_Missense_Mutation_p.H200Y|VRK3_uc010ens.2_Missense_Mutation_p.H250Y|VRK3_uc010ybl.1_Missense_Mutation_p.H200Y|VRK3_uc010ybm.1_Intron|VRK3_uc002prj.1_Missense_Mutation_p.H200Y|VRK3_uc002prk.1_Missense_Mutation_p.H250Y|VRK3_uc010ent.1_Missense_Mutation_p.H6Y|VRK3_uc002prl.2_Missense_Mutation_p.H250Y|VRK3_uc010ybn.1_Silent_p.F227F	NM_016440	NP_057524	Q8IV63	VRK3_HUMAN	vaccinia related kinase 3 isoform 1	250	Protein kinase.					nucleus	ATP binding|protein kinase activity			stomach(1)|skin(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00166)|OV - Ovarian serous cystadenocarcinoma(262;0.00652)		TTGTCCTGGTGAACACCGAAA	0.567													11	41					0	0	0.00185496	0	0
SYT3	84258	broad.mit.edu	37	19	51135934	51135934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:51135934G>A	uc002pst.2	-	2	917	c.283C>T	c.(283-285)CCC>TCC	p.P95S	SYT3_uc002psv.2_Missense_Mutation_p.P95S|SYT3_uc010ycd.1_Missense_Mutation_p.P95S	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	95	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		TTGCGCAGGGGGCCACCGCCC	0.677													7	25					0	0	0.000274275	0	0
GPR32	2854	broad.mit.edu	37	19	51274748	51274748	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:51274748C>T	uc010ycf.1	+	1	891	c.891C>T	c.(889-891)ATC>ATT	p.I297I		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	297	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TGCTGCTCATCCTCCAGGCTA	0.517													10	55					0	0	0.000978159	0	0
GPR32	2854	broad.mit.edu	37	19	51274922	51274922	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:51274922G>A	uc010ycf.1	+	1	1065	c.1065G>A	c.(1063-1065)CGG>CGA	p.R355R		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	355	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		ACGCCCCCCGGGAATGATGGA	0.527													6	65					0	0	0.00198382	0	0
KLK6	5653	broad.mit.edu	37	19	51466790	51466790	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:51466790G>A	uc002pui.2	-	5	473	c.213C>T	c.(211-213)TTC>TTT	p.F71F	KLK6_uc010eoj.2_Intron|KLK6_uc002puh.2_Silent_p.F80F|KLK6_uc002puj.2_5'UTR|KLK6_uc010ycn.1_5'UTR|KLK6_uc002pul.2_Silent_p.F71F|KLK6_uc002pum.2_5'UTR	NM_001012964	NP_001012982	Q92876	KLK6_HUMAN	kallikrein-related peptidase 6 isoform A	71	Peptidase S1.				amyloid precursor protein metabolic process|central nervous system development|collagen catabolic process|hormone metabolic process|myelination|positive regulation of G-protein coupled receptor protein signaling pathway|protein autoprocessing|proteolysis|regulation of cell differentiation|tissue regeneration	endoplasmic reticulum|extracellular region|microsome|mitochondrion|nucleolus	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00372)|GBM - Glioblastoma multiforme(134;0.00871)		GCTTCCCCAGGAAGACCTGAA	0.577													7	41					0	0	0.000442599	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51628950	51628950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:51628950G>A	uc002pvu.2	+	2	585	c.518G>A	c.(517-519)GGG>GAG	p.G173E	SIGLEC9_uc010yct.1_Missense_Mutation_p.G173E	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	173	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		TGTGAGCAGGGGACACCCCCT	0.667													10	56					0	0	0.000978159	0	0
SIGLEC6	946	broad.mit.edu	37	19	52023356	52023356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:52023356C>T	uc002pwy.2	-	8	1504	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K	SIGLEC6_uc002pwz.2_Missense_Mutation_p.E432K|SIGLEC6_uc002pxa.2_3'UTR|SIGLEC6_uc010ydb.1_Missense_Mutation_p.E385K|SIGLEC6_uc010ydc.1_3'UTR|SIGLEC6_uc010eoz.1_3'UTR	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	448	SLAM-like motif.|Cytoplasmic (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		ATCTTGATTTCTGAGTACTCA	0.418													8	91					0	0	0.000274275	0	0
ZNF577	84765	broad.mit.edu	37	19	52376117	52376117	+	Missense_Mutation	SNP	G	A	A	rs140596477		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:52376117G>A	uc010yde.1	-	7	1517	c.1126C>T	c.(1126-1128)CAC>TAC	p.H376Y	ZNF577_uc010ydd.1_Intron|ZNF577_uc002pxx.3_Missense_Mutation_p.H317Y|ZNF577_uc002pxv.2_Missense_Mutation_p.H369Y|ZNF577_uc002pxw.2_Missense_Mutation_p.H310Y	NM_032679	NP_116068	Q9BSK1	ZN577_HUMAN	zinc finger protein 577 isoform a	376	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.019)		TCTCTTATGTGAGTTTTCTCA	0.443													11	115					0	0	0.000978159	0	0
ZNF610	162963	broad.mit.edu	37	19	52869059	52869059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:52869059G>A	uc002pyx.3	+	6	834	c.428G>A	c.(427-429)AGG>AAG	p.R143K	ZNF610_uc002pyy.3_Missense_Mutation_p.R143K|ZNF610_uc002pyz.3_Missense_Mutation_p.R100K|ZNF610_uc002pza.2_Missense_Mutation_p.R143K	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.R143G(1)		ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		CAAGCCGGAAGGAAAATTTAC	0.358													19	202					0	0	0.000958276	0	0
ZNF610	162963	broad.mit.edu	37	19	52869061	52869061	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:52869061A>G	uc002pyx.3	+	6	836	c.430A>G	c.(430-432)AAA>GAA	p.K144E	ZNF610_uc002pyy.3_Missense_Mutation_p.K144E|ZNF610_uc002pyz.3_Missense_Mutation_p.K101E|ZNF610_uc002pza.2_Missense_Mutation_p.K144E	NM_001161426	NP_001154898	Q8N9Z0	ZN610_HUMAN	zinc finger protein 610 isoform a	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)	3				OV - Ovarian serous cystadenocarcinoma(262;0.00396)|GBM - Glioblastoma multiforme(134;0.00434)		AGCCGGAAGGAAAATTTACAG	0.353													18	197					0	0	0.000958276	0	0
ZNF816A	125893	broad.mit.edu	37	19	53453516	53453516	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:53453516A>G	uc002qal.1	-	5	1813	c.1512T>C	c.(1510-1512)GCT>GCC	p.A504A	ZNF321_uc010eqj.2_Intron|ZNF321_uc002qak.1_Intron|ZNF816A_uc002qam.1_Silent_p.A488A	NM_001031665	NP_001026835	Q0VGE8	ZN816_HUMAN	zinc finger protein 816A	504					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0313)		GTTTCTCTCCAGCATGAAGTC	0.393													10	82					0	0	0.000442599	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473546	53473546	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:53473546C>T	uc002qan.3	-	4		c.955G>A				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TTTTTTCTCTCCTAAATGGAT	0.358													13	41					0	0	0.00136819	0	0
ZNF702P	79986	broad.mit.edu	37	19	53473553	53473553	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:53473553G>A	uc002qan.3	-	4		c.948C>T				NR_003578				Synthetic construct DNA, clone: pF1KB9679, Homo sapiens ZNF702 gene for zinc finger protein 702, without stop codon, in Flexi system.												0						TCTCCTAAATGGATTATCTGA	0.363													7	51					0	0	0.00198382	0	0
ZNF415	55786	broad.mit.edu	37	19	53612292	53612292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:53612292C>T	uc002qax.2	-	7	1499	c.1150G>A	c.(1150-1152)GCC>ACC	p.A384T	ZNF415_uc002qat.2_Missense_Mutation_p.A348T|ZNF415_uc002qaw.2_Missense_Mutation_p.A336T|ZNF415_uc010yds.1_Missense_Mutation_p.A336T|ZNF415_uc010ydt.1_Missense_Mutation_p.A336T|ZNF415_uc002qau.2_Missense_Mutation_p.A323T|ZNF415_uc002qav.2_Missense_Mutation_p.A348T|ZNF415_uc002qba.2_Missense_Mutation_p.A106T|ZNF415_uc002qay.2_Missense_Mutation_p.A323T|ZNF415_uc002qaz.2_Missense_Mutation_p.A384T	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	384	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		ACACTAAAGGCTTTGCCACAC	0.408													4	48					0	0	0.000602214	0	0
ZNF677	342926	broad.mit.edu	37	19	53741052	53741052	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:53741052G>A	uc002qbf.1	-	5	1113	c.928C>T	c.(928-930)CAG>TAG	p.Q310*	ZNF677_uc002qbg.1_Nonsense_Mutation_p.Q310*	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	310	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		TGGACTCTCTGATGCCTAGTG	0.418													10	110					0	0	0.000673444	0	0
ZNF677	342926	broad.mit.edu	37	19	53741153	53741153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:53741153G>A	uc002qbf.1	-	5	1012	c.827C>T	c.(826-828)TCG>TTG	p.S276L	ZNF677_uc002qbg.1_Missense_Mutation_p.S276L	NM_182609	NP_872415	Q86XU0	ZN677_HUMAN	zinc finger protein 677	276	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00352)		AGTGAGGTTCGAACTTTTGCT	0.383													16	78					0	0	0.000308642	0	0
BIRC8	112401	broad.mit.edu	37	19	53793465	53793465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:53793465G>A	uc002qbk.2	-	1	1411	c.163C>T	c.(163-165)CCT>TCT	p.P55S		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	55	BIR.				apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		TGTTCCCAAGGATCTTCCTTG	0.433													9	55					0	0	0.000442599	0	0
ZNF331	55422	broad.mit.edu	37	19	54080585	54080585	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54080585A>G	uc002qbx.1	+	7	2205	c.771A>G	c.(769-771)AAA>AAG	p.K257K	ZNF331_uc002qby.1_Silent_p.K257K|ZNF331_uc002qbz.1_Silent_p.K257K|ZNF331_uc002qca.1_Silent_p.K257K|ZNF331_uc010eqr.1_Silent_p.K257K|ZNF331_uc002qcb.1_Silent_p.K257K|ZNF331_uc002qcc.1_Silent_p.K257K|ZNF331_uc002qcd.1_Silent_p.K257K	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	257	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		GTGTGTATAAACTTATTCAGC	0.453			T	?	follicular thyroid adenoma								5	68					0	0	0.00116845	0	0
MIR520H	574493	broad.mit.edu	37	19	54245784	54245784	+	RNA	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54245784T>C	hsa-mir-520h|MI0003175	+			c.19T>C			uc010yeb.1_5'Flank																	0						TGTGACCCTCTAGAGGAAGCA	0.403													11	90					0	0	0.000673444	0	0
NLRP12	91662	broad.mit.edu	37	19	54313965	54313965	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54313965C>T	uc002qch.3	-	3	1168	c.948G>A	c.(946-948)GAG>GAA	p.E316E	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.E316E|NLRP12_uc002qcj.3_Silent_p.E316E|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.E316E	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	316	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TGGGCCGTTTCTCCTCCCAGC	0.567													8	39					0	0	0.000442599	0	0
LILRA6	79168	broad.mit.edu	37	19	54744754	54744754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54744754G>A	uc002qeu.1	-	5	1032	c.908C>T	c.(907-909)TCC>TTC	p.S303F	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Missense_Mutation_p.S303F|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Missense_Mutation_p.S303F|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Missense_Mutation_p.S303F|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Missense_Mutation_p.S303F|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Missense_Mutation_p.S303F|LILRA6_uc010yeq.1_Missense_Mutation_p.S303F|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_Missense_Mutation_p.S164F	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	303	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CCACTCGGAGGAGAGGTTGTG	0.682													7	78					0	0	0.00185496	0	0
LILRA6	79168	broad.mit.edu	37	19	54745567	54745567	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54745567G>A	uc002qeu.1	-	4	667	c.543C>T	c.(541-543)TTC>TTT	p.F181F	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Silent_p.F181F|LILRA6_uc002qek.1_Silent_p.F181F|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Silent_p.F181F|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Silent_p.F181F|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Silent_p.F181F|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Silent_p.F181F|LILRA6_uc010yep.1_Silent_p.F181F|LILRA6_uc010yeq.1_Silent_p.F181F|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_Silent_p.F42F	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	181	Extracellular (Potential).					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGCCCACAGGGAACAGGGCCT	0.597													6	21					0	0	0.00198382	0	0
LILRB5	10990	broad.mit.edu	37	19	54760074	54760074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54760074G>A	uc002qex.2	-	4	598	c.487C>T	c.(487-489)CCC>TCC	p.P163S	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.P154S|LILRB5_uc002qey.2_Missense_Mutation_p.P163S|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_Intron	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	163	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AGGGTCCTGGGGAGCTTCTGT	0.582													7	42					0	0	0.00198382	0	0
LILRB5	10990	broad.mit.edu	37	19	54760177	54760177	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54760177G>A	uc002qex.2	-	4	495	c.384C>T	c.(382-384)GCC>GCT	p.A128A	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Silent_p.A119A|LILRB5_uc002qey.2_Silent_p.A128A|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_Intron	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	128	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GACTCGGCAGGGCTAAAAGAG	0.547													16	78					0	0	0.00121646	0	0
LILRA5	353514	broad.mit.edu	37	19	54818742	54818742	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54818742C>T	uc002qfe.2	-	7	976	c.856G>A	c.(856-858)GAT>AAT	p.D286N	LILRA5_uc002qff.2_Missense_Mutation_p.D274N	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	286	Helical; (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTGTGCCAATCCTGAAATATC	0.527													11	74					0	0	0.00136819	0	0
LILRA5	353514	broad.mit.edu	37	19	54823207	54823207	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:54823207C>T	uc002qfe.2	-	4	456	c.336G>A	c.(334-336)GGG>GGA	p.G112G	LILRA5_uc002qff.2_Silent_p.G100G|LILRA5_uc010yev.1_Silent_p.G112G|LILRA5_uc010yew.1_Silent_p.G100G|LILRA5_uc002qfh.1_Silent_p.G100G|LILRA5_uc002qfg.1_Silent_p.G112G	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	112	Extracellular (Potential).|Ig-like C2-type 1.				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AGCGGTATCTCCCTGCATGGT	0.587													25	111					0	0	0.00127121	0	0
LILRA1	11024	broad.mit.edu	37	19	55106777	55106777	+	Missense_Mutation	SNP	C	T	T	rs141328341		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55106777C>T	uc002qgh.1	+	5	753	c.571C>T	c.(571-573)CGC>TGC	p.R191C	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.R191C	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	191	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GAGCCCGAGTCGCAGGTGGTC	0.567													21	91					0	0	0.00188189	0	0
LILRB1	10859	broad.mit.edu	37	19	55148000	55148000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55148000C>T	uc002qgj.2	+	15	2043	c.1703C>T	c.(1702-1704)TCC>TTC	p.S568F	LILRB1_uc010erp.1_3'UTR|LILRB1_uc002qgl.2_Missense_Mutation_p.S569F|LILRB1_uc002qgk.2_Missense_Mutation_p.S569F|LILRB1_uc002qgm.2_Missense_Mutation_p.S570F|LILRB1_uc010erq.2_Missense_Mutation_p.S552F|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	568	Cytoplasmic (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		GTGAAACACTCCAGACCTAGG	0.577										HNSCC(37;0.09)			5	27					0	0	0.00116845	0	0
LILRP2	79166	broad.mit.edu	37	19	55222142	55222142	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55222142C>T	uc002qgs.1	+	1		c.2542C>T			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCAGATTCTTCCCCTACCTGC	0.617													8	41					0	0	0.000442599	0	0
KIR2DL3	3804	broad.mit.edu	37	19	55250975	55250975	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55250975C>T	uc002qgv.2	+	2	75	c.57C>T	c.(55-57)GCC>GCT	p.A19A	KIR2DL3_uc002qgx.2_Silent_p.A19A|KIR2DL3_uc002qgy.2_Silent_p.A19A|KIR2DL3_uc010erw.1_Silent_p.A19A|KIR2DL1_uc002qgz.1_5'UTR|KIR2DL3_uc002qha.1_5'Flank	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	19					immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		TGCAGGGGGCCTGGCCACATG	0.562													8	45					0	0	0.00121646	0	0
KIR2DL1	3802	broad.mit.edu	37	19	55284794	55284794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55284794G>A	uc002qhb.1	+	3	118	c.80G>A	c.(79-81)AGA>AAA	p.R27K	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL3_uc010erw.1_Intron|KIR2DL1_uc002qgz.1_Intron|KIR2DL3_uc002qha.1_Intron|KIR3DP1_uc010yfi.1_Intron|KIR2DL1_uc010erz.1_Missense_Mutation_p.R27K	NM_014218	NP_055033	P43626	KI2L1_HUMAN	killer cell immunoglobulin-like receptor, two	27	Extracellular (Potential).				immune response|natural killer cell inhibitory signaling pathway	integral to plasma membrane	protein binding|receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GGAGTCCACAGAAAACCTTCC	0.507													21	125					0	0	0.000586117	0	0
FCAR	2204	broad.mit.edu	37	19	55396927	55396927	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55396927G>A	uc002qhr.1	+	3	548	c.351G>A	c.(349-351)CTG>CTA	p.L117L	FCAR_uc002qhq.2_Silent_p.L117L|FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Silent_p.L90L|FCAR_uc010esi.1_Silent_p.L90L|FCAR_uc002qhu.1_Silent_p.L117L|FCAR_uc002qhv.1_Silent_p.L117L|FCAR_uc002qhw.1_Silent_p.L105L|FCAR_uc002qhx.1_Silent_p.L105L|FCAR_uc002qhy.1_Silent_p.L105L|FCAR_uc002qhz.1_Silent_p.L105L|FCAR_uc002qia.1_Intron	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	117	Extracellular (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		CCCTGGAGCTGGTAGTGACAG	0.393													4	39					0	0	0.000602214	0	0
FCAR	2204	broad.mit.edu	37	19	55401079	55401079	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55401079C>T	uc002qhr.1	+	5	911	c.714C>T	c.(712-714)CTC>CTT	p.L238L	FCAR_uc002qhs.1_RNA|FCAR_uc002qht.1_Silent_p.L189L|FCAR_uc010esi.1_Silent_p.L115L|FCAR_uc002qhu.1_Silent_p.L142L|FCAR_uc002qhv.1_Silent_p.L216L|FCAR_uc002qhw.1_Silent_p.L226L|FCAR_uc002qhx.1_Silent_p.L130L|FCAR_uc002qhy.1_Silent_p.L204L|FCAR_uc002qhz.1_Missense_Mutation_p.R202C|FCAR_uc002qia.1_Silent_p.L129L	NM_002000	NP_001991	P24071	FCAR_HUMAN	Fc alpha receptor isoform a precursor	238	Helical; (Potential).				immune response	extracellular region|integral to plasma membrane	IgA binding|receptor activity	p.L238L(1)		ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0443)		GACTGGTCCTCGTGGCTCTCT	0.542													41	241					0	0	0.00195071	0	0
SYT5	6861	broad.mit.edu	37	19	55686019	55686019	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:55686019C>T	uc002qjm.1	-	7	1887	c.827_splice	c.e7-1	p.D276_splice	SYT5_uc002qjp.2_Splice_Site_p.D272_splice|SYT5_uc002qjn.1_Splice_Site_p.D276_splice|SYT5_uc002qjo.1_Splice_Site_p.D275_splice	NM_003180	NP_003171	O00445	SYT5_HUMAN	synaptotagmin V						energy reserve metabolic process|regulation of insulin secretion|synaptic transmission	cell junction|integral to membrane|recycling endosome membrane|synaptic vesicle membrane	metal ion binding|transporter activity				0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		ACGTATGGATCTGGGGAGAGG	0.527													10	74					0	0	0.00136819	0	0
NLRP13	126204	broad.mit.edu	37	19	56435345	56435345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:56435345C>T	uc010ygg.1	-	4	483	c.458G>A	c.(457-459)GGG>GAG	p.G153E		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	153							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CTGTACATTCCCTGAAATAAA	0.418													10	63					0	0	0.00244969	0	0
NLRP8	126205	broad.mit.edu	37	19	56467047	56467047	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:56467047G>A	uc002qmh.2	+	3	1694	c.1623G>A	c.(1621-1623)CTG>CTA	p.L541L	NLRP8_uc010etg.2_Silent_p.L541L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	541						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCCAGCGCCTGATAGCGAGTC	0.453													13	73					0	0	0.00244969	0	0
NLRP5	126206	broad.mit.edu	37	19	56545069	56545069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:56545069C>T	uc002qmj.2	+	9	2609	c.2609C>T	c.(2608-2610)TCT>TTT	p.S870F	NLRP5_uc002qmi.2_Missense_Mutation_p.S851F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	870	LRR 6.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		TTGTTGGAGTCTTTGAGGTAC	0.413													17	270					0	0	0.00152264	0	0
ZNF471	57573	broad.mit.edu	37	19	57037166	57037166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:57037166G>A	uc002qnh.2	+	5	1863	c.1730G>A	c.(1729-1731)GGA>GAA	p.G577E		NM_020813	NP_065864	Q9BX82	ZN471_HUMAN	zinc finger protein 471	577	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0307)		ACTGAATGTGGAAAGGCTTTT	0.433													10	47					0	0	0.000442599	0	0
DUXA	503835	broad.mit.edu	37	19	57670544	57670545	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:57670544_57670545CC>TT	uc002qoa.1	-	3	327_328	c.282_283GG>AA	c.(280-285)GTGGAG>GTAAAG	p.E95K		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	95						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		CTTTGAAACTCCACACCAGGTT	0.475													8	58					0	0	6.4e-05	0	0
ZNF211	10520	broad.mit.edu	37	19	58153435	58153435	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:58153435C>T	uc002qpq.2	+	3	1761	c.1581C>T	c.(1579-1581)CAC>CAT	p.H527H	ZNF211_uc010yhb.1_Silent_p.H531H|ZNF211_uc002qpp.2_Silent_p.H540H|ZNF211_uc002qpr.2_Silent_p.H591H|ZNF211_uc002qps.2_Silent_p.H592H|ZNF211_uc002qpt.2_Silent_p.H539H|ZNF211_uc010yhc.1_Silent_p.H539H|ZNF211_uc010yhd.1_Silent_p.H466H|ZNF211_uc010yhe.1_Silent_p.H518H	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	527	C2H2-type 11.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCATTCAACACCGCAGAGTTC	0.453													12	52					0	0	0.00136819	0	0
ZNF417	147687	broad.mit.edu	37	19	58420681	58420681	+	Missense_Mutation	SNP	C	T	T	rs148360150		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:58420681C>T	uc002qqq.2	-	3	1164	c.965G>A	c.(964-966)AGG>AAG	p.R322K	ZNF417_uc010yhm.1_Missense_Mutation_p.R279K|ZNF417_uc002qqr.2_Missense_Mutation_p.R321K	NM_152475	NP_689688	Q8TAU3	ZN417_HUMAN	zinc finger protein 417	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0151)		CTCATAAGGCCTTTCTCCAGT	0.468													14	167					0	0	0.000308642	0	0
C19orf18	147685	broad.mit.edu	37	19	58485727	58485728	+	Missense_Mutation	DNP	GG	AA	AA	rs150585544		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:58485727_58485728GG>AA	uc002qqv.2	-	1	177_178	c.73_74CC>TT	c.(73-75)CCG>TTG	p.P25L		NM_152474	NP_689687	Q8NEA5	CS018_HUMAN	hypothetical protein LOC147685 precursor	25						integral to membrane				ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.017)		ATCTGCATACGGCAAGCATAAA	0.401													12	46					0	0	6.4e-05	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565153	58565153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:58565153C>T	uc002qrc.1	+	6	1208	c.961C>T	c.(961-963)CCG>TCG	p.P321S		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	321	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		AGGGCCCTTTCCGTGCCCCGA	0.627													5	27					0	0	0.000602214	0	0
SNTG2	54221	broad.mit.edu	37	2	1263174	1263174	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:1263174G>A	uc002qwq.2	+	13	1166	c.1038G>A	c.(1036-1038)AGG>AGA	p.R346R	SNTG2_uc010ewi.2_Silent_p.R219R	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	346	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GAGCAGAAAGGACCTATCACC	0.398													5	95					0	0	0.00116845	0	0
SNTG2	54221	broad.mit.edu	37	2	1263176	1263176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:1263176C>T	uc002qwq.2	+	13	1168	c.1040C>T	c.(1039-1041)ACC>ATC	p.T347I	SNTG2_uc010ewi.2_Missense_Mutation_p.T220I	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	347	PH.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GCAGAAAGGACCTATCACCTC	0.398													6	94					0	0	0.00198382	0	0
TPO	7173	broad.mit.edu	37	2	1491699	1491699	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:1491699C>T	uc002qww.2	+	10	1795	c.1704C>T	c.(1702-1704)TCC>TCT	p.S568S	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Silent_p.S568S|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Silent_p.S395S|TPO_uc010yip.1_Silent_p.S568S|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	568	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	TTGTGCTGTCCAATTCCAGCA	0.582													12	69					0	0	0.000978159	0	0
TPO	7173	broad.mit.edu	37	2	1491755	1491755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:1491755G>A	uc002qww.2	+	10	1851	c.1760G>A	c.(1759-1761)GGG>GAG	p.G587E	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Intron|TPO_uc002qwr.2_Missense_Mutation_p.G587E|TPO_uc002qwx.2_Intron|TPO_uc010yio.1_Missense_Mutation_p.G414E|TPO_uc010yip.1_Missense_Mutation_p.G587E|TPO_uc002qwy.1_Intron|TPO_uc002qwz.2_Intron	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	587	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CGGGACCACGGGCTGCCAGGT	0.577													6	65					0	0	0.00116845	0	0
MYT1L	23040	broad.mit.edu	37	2	1926227	1926227	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:1926227G>A	uc002qxe.2	-	10	2141	c.1314C>T	c.(1312-1314)ATC>ATT	p.I438I	MYT1L_uc002qxd.2_Silent_p.I438I|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	438					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TTTCCAAAGCGATGGCTTTCT	0.547													20	89					0	0	0.00229938	0	0
MYT1L	23040	broad.mit.edu	37	2	1926913	1926913	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:1926913T>A	uc002qxe.2	-	10	1455	c.628A>T	c.(628-630)AAA>TAA	p.K210*	MYT1L_uc002qxd.2_Nonsense_Mutation_p.K210*|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	210					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCAGCGATTTTGCCGAGGTTT	0.423													5	35					0	0	0.000602214	0	0
RNASEH1	246243	broad.mit.edu	37	2	3595539	3595539	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:3595539C>T	uc002qxt.2	-	7	846	c.756G>A	c.(754-756)CAG>CAA	p.Q252Q	RNASEH1_uc002qxs.2_Silent_p.Q135Q	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	252	RNase H.				RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		TGTCCATCCCCTGGGTAAGCC	0.423													9	95					0	0	0.000274275	0	0
RNASEH1	246243	broad.mit.edu	37	2	3597967	3597967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:3597967G>A	uc002qxt.2	-	4	595	c.505C>T	c.(505-507)CCT>TCT	p.P169S	RNASEH1_uc002qxs.2_Missense_Mutation_p.P52S	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	169	RNase H.				RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		ACTTACAAAGGATGGCCTGGC	0.493													9	154					0	0	0.000673444	0	0
ALLC	55821	broad.mit.edu	37	2	3744985	3744985	+	Silent	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:3744985T>G	uc010ewt.2	+	10	950	c.789T>G	c.(787-789)GTT>GTG	p.V263V	ALLC_uc002qyf.2_Silent_p.V34V	NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	282							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		AATGGGCAGTTTTCCGATTGG	0.373										HNSCC(21;0.051)			8	167					0	0	0.000274275	0	0
CMPK2	129607	broad.mit.edu	37	2	6990018	6990019	+	Missense_Mutation	DNP	AC	GT	GT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:6990018_6990019AC>GT	uc002qyo.2	-	5	1421_1422	c.1312_1313GT>AC	c.(1312-1314)GTA>ACA	p.V438T	CMPK2_uc002qyn.1_Splice_Site|CMPK2_uc010yis.1_Intron	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	438					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TAGGCTTAATACCGTCTGCAGG	0.485													11	95					0	0	6.4e-05	0	0
GREB1	9687	broad.mit.edu	37	2	11706683	11706683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:11706683C>T	uc002rbk.1	+	4	655	c.355C>T	c.(355-357)CTC>TTC	p.L119F	GREB1_uc002rbl.2_Missense_Mutation_p.L119F|GREB1_uc002rbm.2_Missense_Mutation_p.L9F|GREB1_uc002rbn.1_Missense_Mutation_p.L119F	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	119						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		GGGCTTTCTCCTCGTGGGGGT	0.602													9	41					0	0	0.000442599	0	0
LPIN1	23175	broad.mit.edu	37	2	11955296	11955296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:11955296G>A	uc010yjn.1	+	18	2498	c.2224G>A	c.(2224-2226)GAG>AAG	p.E742K	LPIN1_uc010yjm.1_Missense_Mutation_p.E827K|LPIN1_uc002rbt.2_Missense_Mutation_p.E742K|LPIN1_uc010yjo.1_Missense_Mutation_p.E243K	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	742	C-LIP.				fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		CTGGGTCAACGAGAGGGGCAC	0.592													6	20					0	0	0.00198382	0	0
MYCN	4613	broad.mit.edu	37	2	16086192	16086192	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:16086192G>A	uc002rci.2	+	3	1668	c.1368G>A	c.(1366-1368)AAG>AAA	p.K456K	MYCN_uc010yjr.1_Silent_p.K448K	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	456					regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			AGTTGCTAAAGAAAATTGAAC	0.438			A		neuroblastoma								23	94					0	0	0.00278032	0	0
MSGN1	343930	broad.mit.edu	37	2	17997928	17997928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:17997928C>T	uc010yjt.1	+	1	143	c.143C>T	c.(142-144)TCC>TTC	p.S48F		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	48					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CAGAGCCTTTCCCCGGCTCCA	0.647													7	37					0	0	0.00198382	0	0
MATN3	4148	broad.mit.edu	37	2	20205995	20205995	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:20205995G>A	uc002rdl.2	-	2	363	c.300C>T	c.(298-300)ACC>ACT	p.T100T	MATN3_uc010exu.1_Silent_p.T100T	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	100	VWFA.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TTTTCACTTTGGTGAATTCCA	0.502													4	15					0	0	0.000602214	0	0
APOB	338	broad.mit.edu	37	2	21224852	21224852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21224852G>A	uc002red.2	-	29	13570	c.13442C>T	c.(13441-13443)GCC>GTC	p.A4481V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4481					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CGTCGCAATGGCCTGGCTTTT	0.368													79	323					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21228381	21228381	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21228381G>C	uc002red.2	-	26	11487	c.11359C>G	c.(11359-11361)CCC>GCC	p.P3787A		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3787					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTTACCTCGGGGAGTGTTGGT	0.398													42	272					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21231351	21231351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21231351C>T	uc002red.2	-	26	8517	c.8389G>A	c.(8389-8391)GGA>AGA	p.G2797R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2797					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGGACTCTCCTTTGGCAGTG	0.423													39	315					0	0	0.00111076	0	0
APOB	338	broad.mit.edu	37	2	21232762	21232762	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21232762C>T	uc002red.2	-	26	7106	c.6978G>A	c.(6976-6978)GGG>GGA	p.G2326G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2326				LIG -> PYW (in Ref. 16; AAA51741).	cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTCAAAATCCCCAATAAGAT	0.338													30	390					0	0	0.00178596	0	0
APOB	338	broad.mit.edu	37	2	21234609	21234609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21234609C>T	uc002red.2	-	26	5259	c.5131G>A	c.(5131-5133)GGA>AGA	p.G1711R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1711					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TAAGCACTTCCCAGTGATAGC	0.458													53	338					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21234637	21234637	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21234637C>T	uc002red.2	-	26	5231	c.5103G>A	c.(5101-5103)GGG>GGA	p.G1701G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1701					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGGCGGCTTTCCCATCCAGAC	0.468													34	319					0	0	0.00111076	0	0
APOB	338	broad.mit.edu	37	2	21234802	21234802	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21234802C>T	uc002red.2	-	26	5066	c.4938G>A	c.(4936-4938)AGG>AGA	p.R1646R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1646					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTTGGCCAATCCTTAGTGTCG	0.473													54	318					0	0	0.000781405	0	0
APOB	338	broad.mit.edu	37	2	21260887	21260887	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:21260887G>A	uc002red.2	-	5	608	c.480C>T	c.(478-480)ATC>ATT	p.I160I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	160	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GGGCAGAAATGATGCCCCTCT	0.483													18	350					0	0	0.00152264	0	0
TMEM214	54867	broad.mit.edu	37	2	27262685	27262685	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:27262685C>T	uc002ria.3	+	14	1712	c.1602C>T	c.(1600-1602)TCC>TCT	p.S534S	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Silent_p.S489S	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	534						integral to membrane	protein binding				0						AGCTCTACTCCTACAGTCTGC	0.587													10	101					0	0	0.000673444	0	0
TRIM54	57159	broad.mit.edu	37	2	27521556	27521556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:27521556G>A	uc002rjo.2	+	2	290	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	TRIM54_uc002rjn.2_Missense_Mutation_p.R97Q	NM_187841	NP_912730	Q9BYV2	TRI54_HUMAN	ring finger protein 30 isoform 2	97					cell differentiation|microtubule-based process|multicellular organismal development|negative regulation of microtubule depolymerization	microtubule|sarcomere	signal transducer activity|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCTGCAGCGAAACCTGCTA	0.572													6	29					0	0	0.000157383	0	0
GCKR	2646	broad.mit.edu	37	2	27731106	27731106	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:27731106G>A	uc002rky.2	+	16	1476	c.1410G>A	c.(1408-1410)GGG>GGA	p.G470G	GCKR_uc010ezd.2_Silent_p.G468G|GCKR_uc010ylu.1_Silent_p.G280G	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	470	SIS 2.				carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					AATATGAAGGGAACTTCATCC	0.493													10	86					0	0	0.00136819	0	0
C2orf71	388939	broad.mit.edu	37	2	29293946	29293946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:29293946G>A	uc002rmt.1	-	1	3182	c.3182C>T	c.(3181-3183)CCC>CTC	p.P1061L		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	1061	Pro-rich.				response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TGCACTCTCGGGGGGAGGGTT	0.667													6	49					0	0	0.00198382	0	0
C2orf71	388939	broad.mit.edu	37	2	29294236	29294236	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:29294236G>A	uc002rmt.1	-	1	2892	c.2892C>T	c.(2890-2892)GGC>GGT	p.G964G		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	964					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CAGATGGAGGGCCGGAGTGGT	0.647													6	31					0	0	0.000274275	0	0
C2orf71	388939	broad.mit.edu	37	2	29296693	29296693	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:29296693C>T	uc002rmt.1	-	1	435	c.435G>A	c.(433-435)TGG>TGA	p.W145*		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	145					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CTGTCCTTTTCCATTTGGAAG	0.498													11	84					0	0	0.000673444	0	0
ALK	238	broad.mit.edu	37	2	29940525	29940525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:29940525G>A	uc002rmy.2	-	2	1613	c.706C>T	c.(706-708)CCT>TCT	p.P236S		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	236	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TCAGGAGAAGGAGAAGGCATG	0.403			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				8	57					0	0	0.000274275	0	0
LCLAT1	253558	broad.mit.edu	37	2	30748456	30748456	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:30748456C>T	uc002rnj.2	+	3	323	c.114C>T	c.(112-114)ATC>ATT	p.I38I	LCLAT1_uc010ymp.1_Intron|LCLAT1_uc002rnk.1_Silent_p.I38I|LCLAT1_uc002rnl.2_5'UTR|LCLAT1_uc010ymq.1_5'UTR	NM_182551	NP_872357	Q6UWP7	LCLT1_HUMAN	lysocardiolipin acyltransferase 1 isoform 1	38					multicellular organismal development|phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			ovary(2)	2						CTTTCAGAATCATGGTGTCAT	0.333													8	123					0	0	0.000673444	0	0
CAPN13	92291	broad.mit.edu	37	2	30976012	30976012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:30976012C>T	uc002rnn.2	-	10	1170	c.994G>A	c.(994-996)GAA>AAA	p.E332K	CAPN13_uc002rnp.1_Missense_Mutation_p.E332K	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	332	Calpain catalytic.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					ATTGGAATTTCGCTACATATA	0.423													14	137					0	0	0.000308642	0	0
GALNT14	79623	broad.mit.edu	37	2	31152266	31152266	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:31152266G>A	uc002rnr.2	-	11	1765	c.1146C>T	c.(1144-1146)TTC>TTT	p.F382F	GALNT14_uc002rnq.2_Silent_p.F362F|GALNT14_uc002rns.2_Silent_p.F387F|GALNT14_uc010ymr.1_Silent_p.F347F|GALNT14_uc010ezo.1_Silent_p.F349F	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	382	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					CTTACTTCCCGAAGGGCCTCT	0.547													6	31					0	0	0.00198382	0	0
XDH	7498	broad.mit.edu	37	2	31573083	31573083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:31573083C>T	uc002rnv.1	-	25	2717	c.2638G>A	c.(2638-2640)GAA>AAA	p.E880K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	880					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AAAGCTCGTTCCATAATCTGA	0.493													5	55					0	0	0.000602214	0	0
XDH	7498	broad.mit.edu	37	2	31604543	31604543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:31604543G>A	uc002rnv.1	-	12	1167	c.1088C>T	c.(1087-1089)CCC>CTC	p.P363L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	363	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	CATGAACACGGGGTTGAGGTC	0.577													6	25					0	0	0.000157383	0	0
BIRC6	57448	broad.mit.edu	37	2	32743456	32743456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:32743456C>T	uc010ezu.2	+	56	11619	c.11485C>T	c.(11485-11487)CCA>TCA	p.P3829S		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3829					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TCTTCAGTCTCCATGTCCAGT	0.373													8	45					0	0	0.000274275	0	0
CRIM1	51232	broad.mit.edu	37	2	36704073	36704073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:36704073G>A	uc002rpd.2	+	6	1072	c.1033G>A	c.(1033-1035)GAT>AAT	p.D345N		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	345	VWFC 1.|Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				GGAATATTATGATGGAGACAT	0.433													8	136					0	0	0.000442599	0	0
LOC728819	728819	broad.mit.edu	37	2	43902622	43902623	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:43902622_43902623GG>TT	uc010fav.1	-	1	839_840	c.839_840CC>AA	c.(838-840)CCC>CAA	p.P280Q	PLEKHH2_uc002rte.3_Intron|PLEKHH2_uc002rtf.3_Intron|PLEKHH2_uc010yny.1_Intron	NM_001101330	NP_001094800			C1GALT1-specific chaperone 1-like												0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				CCATCTTTTGGGGGGTCAGTCC	0.446													11	383					0	0	6.4e-05	0	0
LOC728819	728819	broad.mit.edu	37	2	43902654	43902654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:43902654C>T	uc010fav.1	-	1	808	c.808G>A	c.(808-810)GAT>AAT	p.D270N	PLEKHH2_uc002rte.3_Intron|PLEKHH2_uc002rtf.3_Intron|PLEKHH2_uc010yny.1_Intron	NM_001101330	NP_001094800			C1GALT1-specific chaperone 1-like												0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				ATAGCCATATCTGAACAGCAG	0.413													80	379					0	0	0.000781405	0	0
LRPPRC	10128	broad.mit.edu	37	2	44126743	44126743	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:44126743T>C	uc002rtr.2	-	33	3629	c.3571A>G	c.(3571-3573)AAT>GAT	p.N1191D		NM_133259	NP_573566	P42704	LPPRC_HUMAN	leucine-rich PPR motif-containing protein	1191	RNA-binding.|PPR 19.				mitochondrion transport along microtubule|mRNA transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	condensed nuclear chromosome|cytoskeleton|mitochondrial nucleoid|nuclear inner membrane|nuclear outer membrane|nucleoplasm|perinuclear region of cytoplasm	beta-tubulin binding|microtubule binding|RNA binding			ovary(2)|skin(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TCTATGTTATTACTGTTAAAA	0.289													25	282					0	0	0.00047179	0	0
PPM1B	5495	broad.mit.edu	37	2	44428836	44428837	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:44428836_44428837CC>AA	uc002rtt.2	+	2	926_927	c.498_499CC>AA	c.(496-501)ACCCAG>ACAAAG	p.Q167K	PPM1B_uc002rts.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtu.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtv.2_Intron|PPM1B_uc002rtw.2_Missense_Mutation_p.Q167K|PPM1B_uc002rtx.2_Missense_Mutation_p.Q167K	NM_002706	NP_002697	O75688	PPM1B_HUMAN	protein phosphatase 1B isoform 1	167					protein dephosphorylation	protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein binding|protein serine/threonine phosphatase activity			kidney(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCTTTTCTACCCAGGATCACAA	0.436													13	373					0	0	6.4e-05	0	0
EPAS1	2034	broad.mit.edu	37	2	46603782	46603782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:46603782G>A	uc002ruv.2	+	9	1627	c.1139G>A	c.(1138-1140)GGG>GAG	p.G380E		NM_001430	NP_001421	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	380					angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			ovary(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			AGTGGCAAGGGGGCTGTGTCT	0.542													18	73					0	0	0.000958276	0	0
GTF2A1L	11036	broad.mit.edu	37	2	48960051	48960051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:48960051C>T	uc002rwt.2	+	9	1415	c.1349C>T	c.(1348-1350)TCG>TTG	p.S450L	LHCGR_uc002rwu.3_Intron|LHCGR_uc002rwv.2_Intron	NM_172196	NP_751946	Q9UNN4	TF2AY_HUMAN	general transcription factor IIA, 1-like isoform	Error:Variant_position_missing_in_Q9UNN4_after_alignment					regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	transcription factor TFIIA complex	DNA binding|transcription coactivator activity				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			AGAAGGACATCGTTTAACACC	0.244													7	103					0	0	0.00198382	0	0
NRXN1	9378	broad.mit.edu	37	2	50280421	50280421	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:50280421T>G	uc010fbp.2	-	4	1728	c.921A>C	c.(919-921)GAA>GAC	p.E307D	NRXN1_uc002rxb.3_Missense_Mutation_p.E1044D|NRXN1_uc010fbq.2_Missense_Mutation_p.E1412D|NRXN1_uc002rxe.3_Missense_Mutation_p.E1342D	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	307	Extracellular (Potential).				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GGCTAATGGGTTCTTTTGTCG	0.443													8	52					0	0	0.000673444	0	0
TSPYL6	388951	broad.mit.edu	37	2	54483120	54483120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:54483120C>T	uc002rxr.2	-	1	290	c.169G>A	c.(169-171)GAG>AAG	p.E57K	ACYP2_uc002rxq.3_Intron	NM_001003937	NP_001003937	Q8N831	TSYL6_HUMAN	TSPY-like 6	57					nucleosome assembly	nucleus					0						GCGACCCCCTCCTCTGGAAGC	0.602													13	79					0	0	0.00074312	0	0
CCDC85A	114800	broad.mit.edu	37	2	56419872	56419872	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:56419872C>T	uc002rzn.2	+	2	1039	c.537C>T	c.(535-537)GGC>GGT	p.G179G		NM_001080433	NP_001073902	Q96PX6	CC85A_HUMAN	coiled-coil domain containing 85A	179										breast(3)|ovary(2)	5			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AGGGTGCAGGCTGCGCAGGCA	0.607													5	40					0	0	0.00116845	0	0
BCL11A	53335	broad.mit.edu	37	2	60687970	60687970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:60687970C>T	uc002sae.1	-	4	2305	c.2077G>A	c.(2077-2079)GAG>AAG	p.E693K	BCL11A_uc002sab.2_Missense_Mutation_p.E693K|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.E362K|BCL11A_uc010ypj.1_Missense_Mutation_p.E659K|BCL11A_uc002sad.1_Missense_Mutation_p.E541K|BCL11A_uc002saf.1_Missense_Mutation_p.E659K	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	693					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CTCCCGTTCTCCGAGGAGTGC	0.647			T	IGH@	B-CLL								12	171					0	0	0.000566183	0	0
BCL11A	53335	broad.mit.edu	37	2	60688222	60688222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:60688222G>A	uc002sae.1	-	4	2053	c.1825C>T	c.(1825-1827)CCG>TCG	p.P609S	BCL11A_uc002sab.2_Missense_Mutation_p.P609S|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.P278S|BCL11A_uc010ypj.1_Missense_Mutation_p.P575S|BCL11A_uc002sad.1_Missense_Mutation_p.P457S|BCL11A_uc002saf.1_Missense_Mutation_p.P575S	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	609					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GACTCGCCCGGGGAGCAGCCG	0.667			T	IGH@	B-CLL								9	88					0	0	0.000442599	0	0
FAM161A	84140	broad.mit.edu	37	2	62067638	62067638	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:62067638G>A	uc010ypo.1	-	3	603	c.501C>T	c.(499-501)TCC>TCT	p.S167S	FAM161A_uc002sbm.3_Silent_p.S167S|FAM161A_uc002sbn.3_5'UTR|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Silent_p.S58S	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	167				S -> F (in Ref. 3; BAB14544).	response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						CATACAAGGAGGAAGACTGGC	0.398													10	88					0	0	0.000673444	0	0
WDR92	116143	broad.mit.edu	37	2	68384454	68384454	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:68384454C>G	uc002see.1	-	1	203	c.122G>C	c.(121-123)CGG>CCG	p.R41P	WDR92_uc002sed.1_Intron|WDR92_uc002sef.1_Missense_Mutation_p.R41P|WDR92_uc002seg.1_Intron|PNO1_uc002seh.2_5'Flank	NM_138458	NP_612467	Q96MX6	WDR92_HUMAN	monad	41					apoptosis|histone lysine methylation		methylated histone residue binding				0						GCCGGTGCCCCGTGCGAAGTT	0.607													3	33					0	0	0.00024832	0	0
C2orf42	54980	broad.mit.edu	37	2	70392745	70392745	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:70392745G>A	uc002sgh.2	-	7	1495	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F		NM_017880	NP_060350	Q9NWW7	CB042_HUMAN	hypothetical protein LOC54980	389											0						GAGGAATGTGGAACACCAATG	0.418													6	64					0	0	0.00198382	0	0
ADD2	119	broad.mit.edu	37	2	70918027	70918027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:70918027G>A	uc002sgz.2	-	8	1205	c.740C>T	c.(739-741)TCC>TTC	p.S247F	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.S247F|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.S247F|ADD2_uc010fdt.1_Missense_Mutation_p.S247F|ADD2_uc002shc.1_Missense_Mutation_p.S247F|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.S263F	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	247					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						GGCATTGTGGGAGACAGGCAG	0.577													6	33					0	0	0.000157383	0	0
ALMS1	7840	broad.mit.edu	37	2	73799601	73799601	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:73799601C>T	uc002sje.1	+	18	10711	c.10600C>T	c.(10600-10602)CAA>TAA	p.Q3534*	ALMS1_uc002sjf.1_Nonsense_Mutation_p.Q3490*|ALMS1_uc002sjg.2_Nonsense_Mutation_p.Q2920*|ALMS1_uc002sjh.1_Nonsense_Mutation_p.Q2920*	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3532					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TCTTCCTTATCAAAACATGGA	0.363													9	29					0	0	0.000274275	0	0
C2orf78	388960	broad.mit.edu	37	2	74042632	74042632	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:74042632C>T	uc002sjr.1	+	3	1403	c.1282C>T	c.(1282-1284)CAA>TAA	p.Q428*		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	428										ovary(2)	2						TCTTGAGGACCAAGGGATATT	0.473													7	40					0	0	0.00198382	0	0
DGUOK	1716	broad.mit.edu	37	2	74177794	74177794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:74177794C>T	uc002sjx.2	+	4	611	c.526C>T	c.(526-528)CTC>TTC	p.L176F	DGUOK_uc002sjy.2_Intron|DGUOK_uc002sjz.2_Intron	NM_080916	NP_550438	Q16854	DGUOK_HUMAN	deoxyguanosine kinase isoform a precursor	176					guanosine metabolic process|purine base metabolic process|purine deoxyribonucleoside metabolic process|purine-containing compound salvage	mitochondrial matrix	ATP binding|deoxyguanosine kinase activity|phosphotransferase activity, alcohol group as acceptor				0						GCATTCTTTTCTCCTGTGGGA	0.403													17	209					0	0	0.00188189	0	0
DCTN1	1639	broad.mit.edu	37	2	74605312	74605312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:74605312G>A	uc002skx.2	-	2	405	c.94C>T	c.(94-96)CGT>TGT	p.R32C	DCTN1_uc002skw.1_Missense_Mutation_p.R15C|DCTN1_uc010ffd.2_Missense_Mutation_p.R32C|DCTN1_uc002sky.2_Missense_Mutation_p.R15C	NM_004082	NP_004073	Q14203	DCTN1_HUMAN	dynactin 1 isoform 1	32					cell death|G2/M transition of mitotic cell cycle|mitosis|nervous system development	centrosome|cytosol|kinetochore|microtubule|spindle pole	motor activity|protein binding			ovary(3)|skin(2)	5						ACCTCTACACGGGAGCCCACC	0.592													12	54					0	0	0.00244969	0	0
HTRA2	27429	broad.mit.edu	37	2	74757769	74757769	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:74757769C>T	uc002smi.1	+	2	1134	c.532C>T	c.(532-534)CCT>TCT	p.P178S	AUP1_uc002sme.2_5'Flank|AUP1_uc002smf.2_5'Flank|AUP1_uc002smg.2_5'Flank|AUP1_uc002smh.2_5'Flank|AUP1_uc010yrx.1_5'Flank|AUP1_uc010yry.1_5'Flank|HTRA2_uc002smj.1_Missense_Mutation_p.P178S|HTRA2_uc002smk.1_Missense_Mutation_p.P178S|HTRA2_uc002sml.1_Missense_Mutation_p.P178S|HTRA2_uc002smm.1_5'UTR|HTRA2_uc002smn.1_5'UTR|HTRA2_uc010ffl.2_5'UTR	NM_013247	NP_037379	O43464	HTRA2_HUMAN	HtrA serine peptidase 2 isoform 1 preproprotein	178	Serine protease.				apoptosis|proteolysis|response to stress	CD40 receptor complex|endoplasmic reticulum membrane|internal side of plasma membrane|mitochondrial intermembrane space|mitochondrial membrane|nucleus	serine-type endopeptidase activity|unfolded protein binding			ovary(1)	1						CCGCGAGGTCCCTATCTCGAA	0.617													12	63					0	0	0.000566183	0	0
CTNNA2	1496	broad.mit.edu	37	2	80085236	80085236	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:80085236C>T	uc010ysh.1	+	3	401	c.396C>T	c.(394-396)TCC>TCT	p.S132S	CTNNA2_uc010yse.1_Silent_p.S132S|CTNNA2_uc010ysf.1_Silent_p.S132S|CTNNA2_uc010ysg.1_Silent_p.S132S	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	132					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						CTTTGCTCTCCGCGGTGACAC	0.522													9	57					0	0	0.000274275	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530036	80530036	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:80530036C>T	uc002sok.1	-	2	1179	c.909G>A	c.(907-909)TGG>TGA	p.W303*	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	303	Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						TCAGGGACTTCCAAGAGTTGA	0.627										HNSCC(69;0.2)			4	27					0	0	0.00024832	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518174	84518174	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:84518174T>C	uc010ffz.1	+	1	369	c.232T>C	c.(232-234)TTT>CTT	p.F78L		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						GGGAGGTGGATTTTTTCTCCT	0.488													17	72					0	0	0.00188189	0	0
CAPG	822	broad.mit.edu	37	2	85628968	85628968	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:85628968C>A	uc002spl.1	-	3	386	c.136G>T	c.(136-138)GAC>TAC	p.D46Y	CAPG_uc002spm.1_Missense_Mutation_p.D46Y|CAPG_uc010ysq.1_Missense_Mutation_p.D46Y|CAPG_uc010fgi.1_Missense_Mutation_p.D46Y|CAPG_uc010fgj.1_5'Flank	NM_001747	NP_001738	P40121	CAPG_HUMAN	gelsolin-like capping protein	46	Gelsolin-like 1.				barbed-end actin filament capping|protein complex assembly	F-actin capping protein complex|melanosome|nuclear membrane|nucleolus	actin binding				0						AGGTAGGAGTCCCCCGAGAAG	0.612													11	65					2.61681e-11	1.05393e-10	0.00244969	1	0
GGCX	2677	broad.mit.edu	37	2	85779675	85779675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:85779675G>A	uc002sps.2	-	10	1409	c.1303C>T	c.(1303-1305)CGG>TGG	p.R435W	GGCX_uc010yss.1_Missense_Mutation_p.R274W|GGCX_uc010yst.1_Missense_Mutation_p.R378W	NM_000821	NP_000812	P38435	VKGC_HUMAN	gamma-glutamyl carboxylase isoform 1	435	Lumenal (Potential).				blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification	endoplasmic reticulum membrane|integral to membrane|membrane fraction	gamma-glutamyl carboxylase activity			ovary(1)	1					Anisindione(DB01125)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Drotrecogin alfa(DB00055)|L-Glutamic Acid(DB00142)|Menadione(DB00170)|Phytonadione(DB01022)	TTCCATCGCCGACTCTGTGTA	0.493											OREG0014747	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	92					0	0	0.00127121	0	0
CD8B	926	broad.mit.edu	37	2	87042833	87042833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:87042833C>T	uc002srw.2	-	6	679	c.629G>A	c.(628-630)GGG>GAG	p.G210E	RMND5A_uc002srs.3_Intron|CD8B_uc002srx.2_3'UTR|CD8B_uc002sry.2_Missense_Mutation_p.G180E|CD8B_uc010fgt.2_Missense_Mutation_p.G168R	NM_172213	NP_757362	P10966	CD8B_HUMAN	CD8b antigen isoform 2 precursor	Error:Variant_position_missing_in_P10966_after_alignment					immune response|regulation of defense response to virus by virus|regulation of immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway|viral reproduction	early endosome|extracellular region|integral to plasma membrane|T cell receptor complex	coreceptor activity|MHC class I protein binding			upper_aerodigestive_tract(1)|skin(1)	2						TATACCTTCCCCTTGAGGCCT	0.413													18	126					0	0	0.000566183	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88870399	88870399	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:88870399G>C	uc002stc.3	-	14	3180	c.2978C>G	c.(2977-2979)CCA>CGA	p.P993R		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	993	Cytoplasmic (Potential).|Protein kinase.				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						CACCTGCTCTGGGCTCATATA	0.448													4	244					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	2	90122045	90122045	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:90122045G>A	uc010fhm.2	+	16		c.1914G>A								Parts of antibodies, mostly variable regions.																		AGCGGCAGTGGATCTGGGACA	0.478													13	92					0	0	0.00074312	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95481416	95481416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:95481416G>A	uc010fhq.1	-	2	964	c.572C>T	c.(571-573)TCT>TTT	p.S191F	ANKRD20B_uc010fhp.2_RNA	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						AGCCAGTCTAGACTGATAAGA	0.383													5	70					0	0	0.00116845	0	0
ADRA2B	151	broad.mit.edu	37	2	96781752	96781752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:96781752G>A	uc002svi.2	-	1	137	c.137C>T	c.(136-138)CCT>CTT	p.P46L		NM_000682	NP_000673	P18089	ADA2B_HUMAN	alpha-2B-adrenergic receptor	46	Cytoplasmic (By similarity).				activation of MAPK activity by adrenergic receptor signaling pathway|activation of protein kinase B activity|blood coagulation|cell-cell signaling|epidermal growth factor receptor transactivation by G-protein coupled receptor signaling pathway|negative regulation of epinephrine secretion|negative regulation of norepinephrine secretion|positive regulation of neuron differentiation	integral to plasma membrane	alpha2-adrenergic receptor activity|epinephrine binding|protein binding			ovary(2)|lung(1)	3					Bethanidine(DB00217)|Brimonidine(DB00484)|Debrisoquin(DB04840)|Ergotamine(DB00696)|Fenoldopam(DB00800)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Lofexidine(DB04948)|Norepinephrine(DB00368)|Yohimbine(DB01392)	CAGGTTCTGAGGGGCGCGCAG	0.632													4	20					0	0	0.000602214	0	0
VWA3B	200403	broad.mit.edu	37	2	98809361	98809361	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:98809361G>A	uc002syo.2	+	11	1731	c.1467G>A	c.(1465-1467)AGG>AGA	p.R489R	VWA3B_uc010yvh.1_Silent_p.R339R|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Silent_p.R8R|VWA3B_uc002sym.2_Silent_p.R489R|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Silent_p.R146R|VWA3B_uc002syp.1_5'UTR	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	489										ovary(3)|large_intestine(2)|skin(1)	6						TCCTGCCTAGGATTAAATGGC	0.458													11	89					0	0	0.00244969	0	0
CNGA3	1261	broad.mit.edu	37	2	99008422	99008422	+	Missense_Mutation	SNP	G	A	A	rs141395850		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:99008422G>A	uc002syt.2	+	7	1079	c.662G>A	c.(661-663)CGA>CAA	p.R221Q	CNGA3_uc002syu.2_Missense_Mutation_p.R203Q|CNGA3_uc010fij.2_Missense_Mutation_p.R225Q	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	221					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						GTGCTTGTACGAGCTCGGACA	0.597													7	35					0	0	0.000157383	0	0
CNGA3	1261	broad.mit.edu	37	2	99012835	99012835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:99012835C>T	uc002syt.2	+	8	1619	c.1202C>T	c.(1201-1203)TCC>TTC	p.S401F	CNGA3_uc002syu.2_Missense_Mutation_p.S383F|CNGA3_uc010fij.2_Missense_Mutation_p.S405F	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	401			S -> P (in ACHM2).		signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						AATGTGGGCTCCATGATCTCG	0.512													5	52					0	0	0.00116845	0	0
NMS	129521	broad.mit.edu	37	2	101098740	101098740	+	Missense_Mutation	SNP	C	T	T	rs139519598		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:101098740C>T	uc002tan.1	+	9	423	c.416C>T	c.(415-417)CCC>CTC	p.P139L		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	139					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						TTTTTTCAGCCCAGGAATGGA	0.423													7	55					0	0	0.000442599	0	0
IL1RL1	9173	broad.mit.edu	37	2	102957191	102957191	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:102957191G>A	uc002tbu.1	+	5	784	c.513G>A	c.(511-513)GTG>GTA	p.V171V	IL1RL1_uc010ywa.1_Silent_p.V54V|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Silent_p.V171V	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	171	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TTGATAATGTGATGACTGAGG	0.413													9	79					0	0	0.000978159	0	0
IL18R1	8809	broad.mit.edu	37	2	102992492	102992492	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:102992492C>T	uc002tbw.3	+	5	744	c.594C>T	c.(592-594)ATC>ATT	p.I198I	IL18R1_uc010ywc.1_Silent_p.I198I|IL18R1_uc010ywd.1_Silent_p.I43I|IL18R1_uc010fiy.2_Silent_p.I198I	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	198	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						TATTTAATATCACCAAAACCT	0.333													16	58					0	0	0.00121646	0	0
SLC9A2	6549	broad.mit.edu	37	2	103274173	103274173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:103274173C>T	uc002tca.2	+	2	582	c.440C>T	c.(439-441)CCA>CTA	p.P147L		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	147	Helical; Name=D/M4; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TACCTCCTCCCACCCATCGTG	0.458													30	166					0	0	0.0024448	0	0
TMEM182	130827	broad.mit.edu	37	2	103380863	103380863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:103380863C>T	uc010fjb.2	+	3	495	c.308C>T	c.(307-309)TCG>TTG	p.S103L	TMEM182_uc002tcc.3_Missense_Mutation_p.S60L|TMEM182_uc002tcd.3_Missense_Mutation_p.S7L	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor	103	Extracellular (Potential).					integral to membrane					0						GAGCACAACTCGACCTCCTAT	0.483													14	64					0	0	0.00121646	0	0
RGPD4	285190	broad.mit.edu	37	2	108477287	108477287	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:108477287G>A	uc010ywk.1	+	13	1906	c.1824G>A	c.(1822-1824)AAG>AAA	p.K608K	RGPD4_uc002tdu.2_5'UTR|RGPD4_uc010ywl.1_RNA	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	608	TPR 2.				intracellular transport		binding			skin(2)	2						ATTATTGGAAGAAAGTTTTGC	0.318													10	152					0	0	0.000566183	0	0
NPHP1	4867	broad.mit.edu	37	2	110904405	110904405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:110904405C>T	uc002tfn.3	-	14	1536	c.1442G>A	c.(1441-1443)GGT>GAT	p.G481D	NPHP1_uc002tfm.3_Missense_Mutation_p.G426D|NPHP1_uc002tfl.3_Missense_Mutation_p.G482D|NPHP1_uc002tfo.3_Missense_Mutation_p.G363D|NPHP1_uc010ywx.1_Missense_Mutation_p.G425D|NPHP1_uc010fjv.1_Missense_Mutation_p.G425D	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	481					actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						TCCTCTTTCACCAGTTGACTA	0.358													6	57					0	0	0.00198382	0	0
MERTK	10461	broad.mit.edu	37	2	112751858	112751858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:112751858G>A	uc002thk.1	+	9	1449	c.1327G>A	c.(1327-1329)GGC>AGC	p.G443S	MERTK_uc002thl.1_Missense_Mutation_p.G267S	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	443	Fibronectin type-III 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TGGCCAGAATGGCAGCCGAGC	0.532													6	98					0	0	0.000157383	0	0
POLR1B	84172	broad.mit.edu	37	2	113321967	113321967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:113321967C>T	uc002thw.2	+	10	2217	c.1637C>T	c.(1636-1638)CCC>CTC	p.P546L	POLR1B_uc010fkn.2_Missense_Mutation_p.P490L|POLR1B_uc002thx.2_Missense_Mutation_p.P407L|POLR1B_uc010fko.2_Missense_Mutation_p.P395S|POLR1B_uc010fkp.2_5'UTR|POLR1B_uc010yxn.1_Missense_Mutation_p.P584L|POLR1B_uc002thy.2_Missense_Mutation_p.P407L|POLR1B_uc010yxo.1_Missense_Mutation_p.P323L	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	546					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						GATGGAGCTCCCCACCGATCA	0.517													8	53					0	0	0.000157383	0	0
IL1F7	27178	broad.mit.edu	37	2	113675292	113675292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:113675292G>A	uc002tij.2	+	4	388	c.346G>A	c.(346-348)GGG>AGG	p.G116R	IL1F7_uc002tik.2_Missense_Mutation_p.G95R|IL1F7_uc002til.2_Missense_Mutation_p.G76R|IL1F7_uc002tim.2_Missense_Mutation_p.G55R|IL1F7_uc002tin.2_Missense_Mutation_p.G90R	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	116					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						GGTCTCTAAAGGGGAGTTTTG	0.483													5	93					0	0	0.000602214	0	0
PAX8	7849	broad.mit.edu	37	2	113999250	113999250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:113999250G>A	uc010yxt.1	-	7	821	c.655C>T	c.(655-657)CCC>TCC	p.P219S	PAX8_uc010yxu.1_Missense_Mutation_p.P219S|PAX8_uc010yxv.1_Missense_Mutation_p.P219S|PAX8_uc002tjm.2_Missense_Mutation_p.P219S|PAX8_uc002tjn.2_Missense_Mutation_p.P219S|PAX8_uc010fku.1_Missense_Mutation_p.P219S|LOC654433_uc002tjq.3_Intron|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_Intron	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	219					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						TGCTTTCGGGGTCCGCTGCTG	0.592			T	PPARG	follicular thyroid		Thyroid dysgenesis 						12	38					0	0	0.000308642	0	0
FOXD4L1	200350	broad.mit.edu	37	2	114257232	114257232	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:114257232C>T	uc002tjw.3	+	1	572	c.399C>T	c.(397-399)ATC>ATT	p.I133I		NM_012184	NP_036316	Q9NU39	FX4L1_HUMAN	forkhead box D4-like 1	133	Fork-head.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						TCAGCGGCATCTGCGCCTTCA	0.627													12	202					0	0	0.00074312	0	0
GLI2	2736	broad.mit.edu	37	2	121732542	121732542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:121732542C>T	uc010flp.2	+	8	1255	c.1225C>T	c.(1225-1227)CTC>TTC	p.L409F	GLI2_uc002tmq.1_Missense_Mutation_p.L81F|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.L81F|GLI2_uc002tmu.3_Intron|GLI2_uc010flo.1_Intron|GLI2_uc002tmw.1_Intron	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	409					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				TGCCCTTCCCCTCTCCCAGGA	0.468													4	55					0	0	0.00116845	0	0
GLI2	2736	broad.mit.edu	37	2	121747721	121747721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:121747721G>A	uc010flp.2	+	13	4261	c.4231G>A	c.(4231-4233)GAA>AAA	p.E1411K	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Missense_Mutation_p.E1083K|GLI2_uc002tmu.3_Missense_Mutation_p.E1066K	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1411					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GTCCAGTCAGGAAACAGCAGA	0.697													5	20					0	0	0.000602214	0	0
GLI2	2736	broad.mit.edu	37	2	121748187	121748187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:121748187G>A	uc010flp.2	+	13	4727	c.4697G>A	c.(4696-4698)GGG>GAG	p.G1566E	GLI2_uc002tmq.1_Missense_Mutation_p.G828R|GLI2_uc002tmr.1_Missense_Mutation_p.G811R|GLI2_uc002tmt.3_Missense_Mutation_p.G1238E|GLI2_uc002tmu.3_Missense_Mutation_p.G1221E	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1566					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				ATGGCTGTCGGGGACATGAGC	0.642													11	30					0	0	0.000673444	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125204378	125204378	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:125204378G>C	uc002tno.2	+	6	1146	c.782G>C	c.(781-783)GGC>GCC	p.G261A	CNTNAP5_uc010flu.2_Missense_Mutation_p.G261A	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	261	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GCCACCCTGGGCAGCCTCCTG	0.607													3	32					0	0	0.00024832	0	0
ERCC3	2071	broad.mit.edu	37	2	128047394	128047394	+	Silent	SNP	G	A	A	rs114994654	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:128047394G>A	uc002toh.1	-	5	623	c.528C>T	c.(526-528)TTC>TTT	p.F176F	ERCC3_uc002toe.1_5'UTR|ERCC3_uc002tof.1_Silent_p.F112F|ERCC3_uc002tog.1_Silent_p.F112F|ERCC3_uc010flx.1_5'UTR|ERCC3_uc010yzh.1_RNA|ERCC3_uc010fly.2_3'UTR	NM_000122	NP_000113	P19447	ERCC3_HUMAN	excision repair cross-complementing rodent	176					cell cycle checkpoint|DNA topological change|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA duplex unwinding|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein localization|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	holo TFIIH complex	3'-5' DNA helicase activity|ATP binding|damaged DNA binding|protein C-terminus binding|protein N-terminus binding|transcription factor binding			ovary(2)|lung(2)|breast(2)|kidney(1)	7	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.073)		AACTTTCAACGAAGTATCTGC	0.512			Mis|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				12	83					0	0	0.000308642	0	0
MYO7B	4648	broad.mit.edu	37	2	128393813	128393813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:128393813G>A	uc002top.2	+	44	6012	c.5959G>A	c.(5959-5961)GAC>AAC	p.D1987N	MYO7B_uc002tos.1_Missense_Mutation_p.D97N|MYO7B_uc002tot.2_Missense_Mutation_p.D97N	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1987	FERM 2.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CAAGCATAAGGACAAGACAGT	0.607													12	69					0	0	0.000308642	0	0
WDR33	55339	broad.mit.edu	37	2	128471199	128471199	+	Missense_Mutation	SNP	C	A	A	rs34080906		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:128471199C>A	uc002tpg.1	-	18	3449	c.3266G>T	c.(3265-3267)CGG>CTG	p.R1089L		NM_018383	NP_060853	Q9C0J8	WDR33_HUMAN	WD repeat domain 33 isoform 1	1089					postreplication repair|spermatogenesis	collagen|nucleus	protein binding				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0695)		CTCGGGATCCCGGGGGAAACG	0.617													7	124					0.000442599	0.00176687	0.000442599	1	0
POTEF	728378	broad.mit.edu	37	2	130877804	130877804	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:130877804C>T	uc010fmh.2	-	3	685	c.285G>A	c.(283-285)AGG>AGA	p.R95R		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	95						cell cortex	ATP binding			skin(3)|ovary(2)	5						CCATCTTGTTCCTGAGTGTCT	0.612													10	128					0	0	0.00244969	0	0
GPR148	344561	broad.mit.edu	37	2	131487424	131487424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:131487424C>T	uc002trv.1	+	1	702	c.700C>T	c.(700-702)CTC>TTC	p.L234F		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	234	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					CTGCACAGCTCTCATTGCCAA	0.572													15	82					0	0	0.000308642	0	0
ARHGEF4	50649	broad.mit.edu	37	2	131798976	131798976	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:131798976G>A	uc002tsa.1	+	9	1798	c.1278G>A	c.(1276-1278)AAG>AAA	p.K426K	ARHGEF4_uc010fmw.1_Intron|ARHGEF4_uc002tsb.1_Silent_p.K426K|ARHGEF4_uc010fmx.1_Silent_p.K366K|ARHGEF4_uc002tsc.1_5'UTR	NM_015320	NP_056135	Q9NR80	ARHG4_HUMAN	Rho guanine nucleotide exchange factor 4 isoform	426	DH.				apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|lamellipodium assembly|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|ruffle membrane	protein domain specific binding|Rac guanyl-nucleotide exchange factor activity			breast(3)|ovary(2)|skin(1)	6		Prostate(154;0.055)		BRCA - Breast invasive adenocarcinoma(221;0.097)		CGGTGCAGAAGATCTGCAAGT	0.602													7	22					0	0	0.000442599	0	0
YSK4	80122	broad.mit.edu	37	2	135743891	135743891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:135743891G>A	uc002tue.1	-	7	2582	c.2551C>T	c.(2551-2553)CCT>TCT	p.P851S	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.P738S|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.P579S|YSK4_uc002tui.3_Missense_Mutation_p.P868S	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	851							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TCTTCTGAAGGGATAAATGGG	0.418													12	101					0	0	0.00136819	0	0
LCT	3938	broad.mit.edu	37	2	136545943	136545943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:136545943C>T	uc002tuu.1	-	17	5746	c.5735G>A	c.(5734-5736)GGG>GAG	p.G1912E		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1912	Cytoplasmic (Potential).				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TTGTGTTTTCCCTTGCTTAGA	0.453													31	187					0	0	0.000814825	0	0
LCT	3938	broad.mit.edu	37	2	136570170	136570170	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:136570170G>A	uc002tuu.1	-	7	2075	c.2064C>T	c.(2062-2064)TCC>TCT	p.S688S		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	688	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGATGAGGCGGGAGGTGTAAT	0.552													8	37					0	0	0.000157383	0	0
THSD7B	80731	broad.mit.edu	37	2	138000129	138000129	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:138000129G>A	uc002tva.1	+	9	2160	c.2160G>A	c.(2158-2160)AGG>AGA	p.R720R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.R610R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGCCCAAGGATGTGCCAAG	0.478													6	25					0	0	0.00198382	0	0
THSD7B	80731	broad.mit.edu	37	2	138169266	138169266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:138169266C>T	uc002tva.1	+	13	2690	c.2690C>T	c.(2689-2691)TCC>TTC	p.S897F	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.S787F	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GAATTTATATCCCAACCTTAT	0.463													11	86					0	0	0.00136819	0	0
THSD7B	80731	broad.mit.edu	37	2	138378199	138378199	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:138378199G>A	uc002tva.1	+	19	3615	c.3615G>A	c.(3613-3615)CAG>CAA	p.Q1205Q	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		AGAAGCCCCAGAGAATGAGCA	0.463													19	72					0	0	0.00229938	0	0
LRP1B	53353	broad.mit.edu	37	2	141143522	141143522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:141143522C>T	uc002tvj.1	-	67	11443	c.10471G>A	c.(10471-10473)GAT>AAT	p.D3491N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3491	Extracellular (Potential).|LDL-receptor class A 25.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CGCCAGTGATCGGGAATACAG	0.378										TSP Lung(27;0.18)			16	57					0	0	0.000566183	0	0
LRP1B	53353	broad.mit.edu	37	2	141473639	141473639	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:141473639A>G	uc002tvj.1	-	37	6898	c.5926T>C	c.(5926-5928)TTA>CTA	p.L1976L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1976	Extracellular (Potential).|LDL-receptor class B 20.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACTTCAATTAAGTTGAAACCA	0.343										TSP Lung(27;0.18)			5	84					0	0	0.000602214	0	0
RBM43	375287	broad.mit.edu	37	2	152112232	152112232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:152112232G>A	uc002txh.2	-	2	177	c.29C>T	c.(28-30)TCC>TTC	p.S10F		NM_198557	NP_940959	Q6ZSC3	RBM43_HUMAN	RNA binding motif protein 43	10							nucleotide binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(221;0.131)		AGGAGCTTTGGATTCCTTGAC	0.333													9	44					0	0	0.000274275	0	0
NEB	4703	broad.mit.edu	37	2	152423779	152423779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:152423779C>T	uc010fnx.2	-	86	13147	c.12956G>A	c.(12955-12957)AGT>AAT	p.S4319N	NEB_uc002txr.2_Missense_Mutation_p.S742N	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4319	Nebulin 118.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ATCAATATCACTGACAAGGGT	0.433													7	84					0	0	0.000157383	0	0
NEB	4703	broad.mit.edu	37	2	152432303	152432303	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:152432303C>A	uc010fnx.2	-	79	12007	c.11816G>T	c.(11815-11817)AGA>ATA	p.R3939I	NEB_uc002txr.2_Missense_Mutation_p.R362I	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3939	Nebulin 107.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCAAACCTCTCTGTACTTTGG	0.333													11	321					0.00185496	0.0073679	0.00185496	1	0
NEB	4703	broad.mit.edu	37	2	152507377	152507377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:152507377C>T	uc010fnx.2	-	53	7129	c.6938G>A	c.(6937-6939)CGA>CAA	p.R2313Q		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2313	Nebulin 61.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AAGTTGCTTTCGGTAGCCTTG	0.388													26	143					0	0	0.001512	0	0
NEB	4703	broad.mit.edu	37	2	152522747	152522747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:152522747C>T	uc010fnx.2	-	41	5079	c.4888G>A	c.(4888-4890)GAT>AAT	p.D1630N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1630	Nebulin 42.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTGACCATATCCAGAGGTGTG	0.488													11	107					0	0	0.000422831	0	0
NEB	4703	broad.mit.edu	37	2	152548668	152548668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:152548668C>T	uc010fnx.2	-	22	2202	c.2011G>A	c.(2011-2013)GAC>AAC	p.D671N	NEB_uc010fny.1_Missense_Mutation_p.D225N	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	671					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACATATAAGTCTTTATATCTA	0.383													15	152					0	0	0.000308642	0	0
CYTIP	9595	broad.mit.edu	37	2	158287384	158287384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:158287384C>T	uc002tzj.1	-	4	442	c.370G>A	c.(370-372)GGC>AGC	p.G124S	CYTIP_uc010zcl.1_Missense_Mutation_p.G18S	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	124	PDZ.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						GCTTGCAGGCCAGCACAGTGA	0.398													4	39					0	0	0.000602214	0	0
TANC1	85461	broad.mit.edu	37	2	160035431	160035431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:160035431C>T	uc002uag.2	+	14	2541	c.2267C>T	c.(2266-2268)CCG>CTG	p.P756L	TANC1_uc010fol.1_Missense_Mutation_p.P650L|TANC1_uc010zcm.1_Missense_Mutation_p.P748L|TANC1_uc010fom.1_Missense_Mutation_p.P562L|TANC1_uc002uai.1_RNA	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	756						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						AGGGCACTTCCGATTCTCAAC	0.552													14	144					0	0	0.000958276	0	0
DPP4	1803	broad.mit.edu	37	2	162851471	162851471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:162851471C>T	uc002ubz.2	-	25	2760	c.2199G>A	c.(2197-2199)ATG>ATA	p.M733I	DPP4_uc010fpb.2_Missense_Mutation_p.M409I	NM_001935	NP_001926	P27487	DPP4_HUMAN	dipeptidylpeptidase IV	733	Extracellular (Potential).				cell adhesion|endothelial cell migration|negative regulation of extracellular matrix disassembly|positive regulation of cell proliferation|proteolysis|regulation of cell-cell adhesion mediated by integrin|response to hypoxia|T cell activation|T cell costimulation	apical plasma membrane|cell surface|endocytic vesicle|extracellular region|integral to membrane|invadopodium membrane|lamellipodium membrane|membrane raft	aminopeptidase activity|dipeptidyl-peptidase activity|protease binding|protein homodimerization activity|receptor activity|receptor binding|serine-type endopeptidase activity			ovary(3)	3					Sitagliptin(DB01261)	TTTTCTATACCATTGCCTGGA	0.468													6	31					0	0	0.00116845	0	0
IFIH1	64135	broad.mit.edu	37	2	163124026	163124026	+	Missense_Mutation	SNP	T	A	A	rs116508532	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:163124026T>A	uc002uce.2	-	15	3083	c.2861A>T	c.(2860-2862)TAT>TTT	p.Y954F		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	954					detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						ATTTATTTGATAGTCGGCACA	0.368													6	79					0	0	0.000157383	0	0
SCN2A	6326	broad.mit.edu	37	2	166172225	166172225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:166172225G>A	uc002udc.2	+	11	1918	c.1628G>A	c.(1627-1629)GGA>GAA	p.G543E	SCN2A_uc002udd.2_Missense_Mutation_p.G543E|SCN2A_uc002ude.2_Missense_Mutation_p.G543E	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	543					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TCCTTGGAAGGAAGTAGGCTG	0.279													19	91					0	0	0.00152264	0	0
SCN1A	6323	broad.mit.edu	37	2	166900401	166900401	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:166900401G>A	uc010zcz.1	-	11	1839	c.1821C>T	c.(1819-1821)TCC>TCT	p.S607S	SCN1A_uc002udo.3_Silent_p.S476S|SCN1A_uc010fpk.2_Silent_p.S476S	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	607						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GCACAAACAAGGAATCTCTAC	0.527													5	26					0	0	0.000602214	0	0
SCN9A	6335	broad.mit.edu	37	2	167141201	167141201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:167141201C>T	uc010fpl.2	-	12	2077	c.1736G>A	c.(1735-1737)GGA>GAA	p.G579E	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.G450E|SCN9A_uc002uds.1_Missense_Mutation_p.G450E|SCN9A_uc002udt.1_Missense_Mutation_p.G450E	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	579						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CTCATTGTCTCCAAAAATGCT	0.507													6	35					0	0	0.00116845	0	0
B3GALT1	8708	broad.mit.edu	37	2	168726259	168726259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:168726259C>T	uc002udz.1	+	2	1061	c.710C>T	c.(709-711)TCG>TTG	p.S237L		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	237	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						CCTTTCTGTTCGGGGACTGGC	0.488													15	50					0	0	0.000422831	0	0
ABCB11	8647	broad.mit.edu	37	2	169830229	169830229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:169830229C>T	uc002ueo.1	-	13	1556	c.1430G>A	c.(1429-1431)GGA>GAA	p.G477E	ABCB11_uc010zda.1_5'Flank|ABCB11_uc010zdb.1_5'Flank	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	477	Cytoplasmic (Potential).|ABC transporter 1.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ACCCACCATTCCTTCACAGGG	0.453													7	48					0	0	0.000157383	0	0
LRP2	4036	broad.mit.edu	37	2	170139449	170139449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:170139449G>A	uc002ues.2	-	10	1318	c.1105C>T	c.(1105-1107)CAC>TAC	p.H369Y	LRP2_uc010zdf.1_Missense_Mutation_p.H369Y	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	369	EGF-like 2.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGGCACAGGTGACGGCCAGGT	0.438													9	170					0	0	0.000978159	0	0
MYO3B	140469	broad.mit.edu	37	2	171239646	171239646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:171239646G>A	uc002ufy.2	+	11	1275	c.1132G>A	c.(1132-1134)GAC>AAC	p.D378N	MYO3B_uc002ufv.2_Missense_Mutation_p.D365N|MYO3B_uc010fqb.1_Missense_Mutation_p.D365N|MYO3B_uc002ufz.2_Missense_Mutation_p.D378N|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	378	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						ATATGTTGGAGACATCTTAAT	0.343													9	121					0	0	0.000442599	0	0
OSBPL6	114880	broad.mit.edu	37	2	179248804	179248804	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179248804C>T	uc002ulx.2	+	18	2292	c.1914C>T	c.(1912-1914)TCC>TCT	p.S638S	OSBPL6_uc002uly.2_Silent_p.S663S|OSBPL6_uc010zfe.1_Silent_p.S607S|OSBPL6_uc002ulz.2_Silent_p.S602S|OSBPL6_uc002uma.2_Silent_p.S642S	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	638					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GATACTGCTCCACCTATTTCA	0.443													15	176					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179398597	179398597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179398597C>T	uc010zfg.1	-	307	95265	c.95041G>A	c.(95041-95043)GAC>AAC	p.D31681N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D25376N|TTN_uc010zfi.1_Missense_Mutation_p.D25309N|TTN_uc010zfj.1_Missense_Mutation_p.D25184N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32608							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCATTGTGTCTGTTCTGCGC	0.408													7	42					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179440025	179440025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179440025C>T	uc010zfg.1	-	275	63354	c.63130G>A	c.(63130-63132)GGG>AGG	p.G21044R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G14739R|TTN_uc010zfi.1_Missense_Mutation_p.G14672R|TTN_uc010zfj.1_Missense_Mutation_p.G14547R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21971							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTTCTCCCCGCGCTGTTC	0.502													5	10					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179486673	179486673	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179486673C>T	uc010zfg.1	-	193	37496	c.37272G>A	c.(37270-37272)AAG>AAA	p.K12424K	TTN_uc010zfh.1_Silent_p.K6119K|TTN_uc010zfi.1_Silent_p.K6052K|TTN_uc010zfj.1_Silent_p.K5927K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13351							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACTGCTCCCTTGGATATGA	0.368													5	9					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179498783	179498783	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179498783A>G	uc010zfg.1	-	180	34963	c.34739T>C	c.(34738-34740)CTT>CCT	p.L11580P	TTN_uc010zfh.1_Missense_Mutation_p.L5275P|TTN_uc010zfi.1_Missense_Mutation_p.L5208P|TTN_uc010zfj.1_Missense_Mutation_p.L5083P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12507							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGATCTTCAAGAGGTGACAT	0.358													3	37					0	0	6.4e-05	0	0
TTN	7273	broad.mit.edu	37	2	179569676	179569676	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179569676C>T	uc010zfg.1	-	101	26114	c.25890G>A	c.(25888-25890)GAG>GAA	p.E8630E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E5291E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9557							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCTGACCTCTCTATTTCCT	0.338													12	152					0	0	0.000422831	0	0
TTN	7273	broad.mit.edu	37	2	179584073	179584073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179584073G>A	uc010zfg.1	-	80	20536	c.20312C>T	c.(20311-20313)TCA>TTA	p.S6771L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3432L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7698							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGCCAACTGAAATCGGGGC	0.502													8	77					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179586652	179586652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179586652C>T	uc010zfg.1	-	75	19230	c.19006G>A	c.(19006-19008)GGA>AGA	p.G6336R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G2997R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7263							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGAGTCTCCTTTGCCTACT	0.418													10	158					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179592939	179592939	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179592939G>A	uc010zfg.1	-	64	16104	c.15880C>T	c.(15880-15882)CTG>TTG	p.L5294L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L1955L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6221							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAACTTCCAGAGACACAGAT	0.393													4	33					0	0	0.00116845	0	0
TTN	7273	broad.mit.edu	37	2	179604553	179604553	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179604553C>T	uc010zfh.1	-	46	13118	c.12894G>A	c.(12892-12894)CTG>CTA	p.L4298L	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Silent_p.L4231L|TTN_uc010zfj.1_Silent_p.L4106L|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTCCATTTTCAGGTTAGCCA	0.398													18	107					0	0	0.00121646	0	0
TTN	7273	broad.mit.edu	37	2	179613203	179613203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179613203C>T	uc002unb.2	-	46	14148	c.13924G>A	c.(13924-13926)GAA>AAA	p.E4642K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	756							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAATGTATTTCCTGCTGTTCC	0.368													6	59					0	0	0.000274275	0	0
TTN	7273	broad.mit.edu	37	2	179621485	179621485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179621485C>T	uc010zfh.1	-	44	10429	c.10205G>A	c.(10204-10206)AGA>AAA	p.R3402K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCGGACTCTCTTACATCTTT	0.393													5	42					0	0	0.00198382	0	0
TTN	7273	broad.mit.edu	37	2	179633539	179633539	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179633539G>A	uc010zfg.1	-	38	9248	c.9024C>T	c.(9022-9024)ATC>ATT	p.I3008I	TTN_uc010zfh.1_Silent_p.I2962I|TTN_uc010zfi.1_Silent_p.I2962I|TTN_uc010zfj.1_Silent_p.I2962I|TTN_uc002unb.2_Silent_p.I3008I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3008							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGTTGATTTGATTTCCACAC	0.408													9	40					0	0	0.000978159	0	0
TTN	7273	broad.mit.edu	37	2	179640629	179640629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179640629C>T	uc010zfg.1	-	28	6186	c.5962G>A	c.(5962-5964)GAA>AAA	p.E1988K	TTN_uc010zfh.1_Missense_Mutation_p.E1942K|TTN_uc010zfi.1_Missense_Mutation_p.E1942K|TTN_uc010zfj.1_Missense_Mutation_p.E1942K|TTN_uc002unb.2_Missense_Mutation_p.E1988K|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1988							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCACTTTTTCATGGGTAATT	0.443													17	92					0	0	0.000566183	0	0
CCDC141	285025	broad.mit.edu	37	2	179732833	179732833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179732833C>T	uc002unf.1	-	6	826	c.769G>A	c.(769-771)GAA>AAA	p.E257K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	257							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GCTTGCTTTTCCTGAGAGCAC	0.517													9	41					0	0	0.000673444	0	0
CCDC141	285025	broad.mit.edu	37	2	179733924	179733925	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:179733924_179733925GG>AA	uc002unf.1	-	5	645_646	c.588_589CC>TT	c.(586-591)TTCCAT>TTTTAT	p.H197Y		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	197	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TGTTTTTGATGGAAGTGAATAA	0.421													13	91					0	0	6.4e-05	0	0
ITGA4	3676	broad.mit.edu	37	2	182359477	182359477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:182359477C>T	uc002unu.2	+	12	2040	c.1277C>T	c.(1276-1278)TCG>TTG	p.S426L		NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	426	FG-GAP 7.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	ATCAGCAAATCGTTAAGTATG	0.308													8	72					0	0	0.000673444	0	0
CERKL	375298	broad.mit.edu	37	2	182430228	182430228	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:182430228C>T	uc002unx.2	-	5	788	c.687G>A	c.(685-687)CGG>CGA	p.R229R	CERKL_uc002uny.2_Intron|CERKL_uc010zfm.1_Silent_p.R185R|CERKL_uc002unz.2_Intron|CERKL_uc002uoa.2_Intron|CERKL_uc002uob.2_Intron|CERKL_uc002uoc.2_Intron|CERKL_uc010frk.2_Intron|CERKL_uc002uod.1_Intron|CERKL_uc002uoe.2_Intron	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	229	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			ACAATGGTTTCCGATGCCCAC	0.313													12	47					0	0	0.00244969	0	0
COL5A2	1290	broad.mit.edu	37	2	189917648	189917648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:189917648G>A	uc002uqk.2	-	39	2925	c.2650C>T	c.(2650-2652)CCT>TCT	p.P884S	COL5A2_uc010frx.2_Missense_Mutation_p.P460S	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	884					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TGAGGGCCAGGGGATCCTGCT	0.493													7	32					0	0	0.00198382	0	0
COL5A2	1290	broad.mit.edu	37	2	189929336	189929336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:189929336C>T	uc002uqk.2	-	25	1938	c.1663G>A	c.(1663-1665)GGA>AGA	p.G555R	COL5A2_uc010frx.2_Missense_Mutation_p.G131R	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	555					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCCTGGCTTCCTTTGGGTCCT	0.512													7	34					0	0	0.000274275	0	0
Unknown	0	broad.mit.edu	37	2	190788124	190788124	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:190788124G>A	uc002uro.2	+	1	206	c.63G>A	c.(61-63)GGG>GGA	p.G21G						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		TATTCATTGGGAATCTCAACA	0.443													9	44					0	0	0.000673444	0	0
STAT4	6775	broad.mit.edu	37	2	191900938	191900938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:191900938G>A	uc002usm.1	-	17	1776	c.1522C>T	c.(1522-1524)CGT>TGT	p.R508C	STAT4_uc002usn.1_Missense_Mutation_p.R508C|STAT4_uc010zgk.1_Missense_Mutation_p.R353C|STAT4_uc002uso.2_Missense_Mutation_p.R508C	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	508					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			TTAAGACCACGACCAACGTAC	0.458													12	57					0	0	0.00185496	0	0
DNAH7	56171	broad.mit.edu	37	2	196619118	196619118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:196619118G>A	uc002utj.3	-	63	11808	c.11707C>T	c.(11707-11709)CTT>TTT	p.L3903F	DNAH7_uc002uti.3_Missense_Mutation_p.L386F	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3903					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCAAACCCAAGAAGATCAATA	0.483													10	49					0	0	0.000673444	0	0
DNAH7	56171	broad.mit.edu	37	2	196799407	196799407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:196799407G>A	uc002utj.3	-	21	3480	c.3379C>T	c.(3379-3381)CTC>TTC	p.L1127F		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1127	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATCTCTATGAGTTCTACAACC	0.403													15	117					0	0	0.000422831	0	0
DNAH7	56171	broad.mit.edu	37	2	196799422	196799422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:196799422C>T	uc002utj.3	-	21	3465	c.3364G>A	c.(3364-3366)GGA>AGA	p.G1122R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1122	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACAACCTCTCCTTCGCTGCTC	0.408													12	115					0	0	0.000978159	0	0
PLCL1	5334	broad.mit.edu	37	2	198949938	198949938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:198949938G>A	uc010fsp.2	+	2	1988	c.1697G>A	c.(1696-1698)CGA>CAA	p.R566Q	PLCL1_uc002uuv.3_Missense_Mutation_p.R487Q	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	566	Interaction with GABA A beta subunit (By similarity).				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GAAATGTCTCGAAGGATGTCG	0.393													8	43					0	0	0.000157383	0	0
AOX1	316	broad.mit.edu	37	2	201501681	201501681	+	Silent	SNP	C	T	T	rs146121085		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:201501681C>T	uc002uvx.2	+	22	2495	c.2394C>T	c.(2392-2394)TGC>TGT	p.C798C	AOX1_uc010zhf.1_Silent_p.C354C|AOX1_uc010fsu.2_Silent_p.C164C	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	798					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	AGGTCATGTGCCATGTAAGGC	0.448													11	46					0	0	0.000673444	0	0
ALS2CR11	151254	broad.mit.edu	37	2	202446852	202446852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:202446852C>T	uc002uye.2	-	5	653	c.605G>A	c.(604-606)GGG>GAG	p.G202E	ALS2CR11_uc002uyf.2_Missense_Mutation_p.G202E|ALS2CR11_uc010fti.2_Missense_Mutation_p.G202E	NM_152525	NP_689738	Q53TS8	AL2SA_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	202										large_intestine(1)|ovary(1)|skin(1)	3						CTGAACACTCCCTAACAAGAA	0.343													16	71					0	0	0.000566183	0	0
NBEAL1	65065	broad.mit.edu	37	2	203964360	203964361	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:203964360_203964361GG>TT	uc002uzt.3	+	11	1440_1441	c.1107_1108GG>TT	c.(1105-1110)CAGGGA>CATTGA	p.369_370QG>H*		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	369_370							binding			ovary(1)|skin(1)	2						AGGTGTTTCAGGGACAATTGGA	0.391													15	416					0	0	6.4e-05	0	0
NRP2	8828	broad.mit.edu	37	2	206659665	206659665	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:206659665C>T	uc002vaw.2	+	17	3470	c.2679C>T	c.(2677-2679)TCC>TCT	p.S893S	NRP2_uc002vax.2_Silent_p.S888S|NRP2_uc002vay.2_Silent_p.S871S	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	893	Cytoplasmic (Potential).				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GCACCTGTTCCTACTCGGGCC	0.572													6	43					0	0	0.00116845	0	0
GPR1	2825	broad.mit.edu	37	2	207040918	207040918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:207040918C>T	uc002vbl.3	-	3	1440	c.1054G>A	c.(1054-1056)GAA>AAA	p.E352K	GPR1_uc010fue.2_Missense_Mutation_p.E352K|GPR1_uc010fuf.2_Missense_Mutation_p.E352K	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	352	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		TGAGCTGTTTCCAGGAGACAC	0.408													6	40					0	0	0.000274275	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171563	207171563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:207171563G>A	uc002vbp.2	+	5	2561	c.2311G>A	c.(2311-2313)GGA>AGA	p.G771R		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	771							nucleic acid binding|zinc ion binding			ovary(3)	3						GGATGCTGAAGGAAAAGAACG	0.423													22	103					0	0	0.00278032	0	0
ZDBF2	57683	broad.mit.edu	37	2	207172302	207172302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:207172302C>T	uc002vbp.2	+	5	3300	c.3050C>T	c.(3049-3051)GCT>GTT	p.A1017V		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1017							nucleic acid binding|zinc ion binding			ovary(3)	3						CCTCAAGTAGCTGTTAACAAA	0.343													6	52					0	0	0.00198382	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175678	207175678	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:207175678G>A	uc002vbp.2	+	5	6676	c.6426G>A	c.(6424-6426)AAG>AAA	p.K2142K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2142							nucleic acid binding|zinc ion binding			ovary(3)	3						AGCTTCCAAAGAAAAGAAATT	0.358													12	70					0	0	0.00136819	0	0
ADAM23	8745	broad.mit.edu	37	2	207426961	207426961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:207426961C>T	uc002vbq.2	+	13	1512	c.1289C>T	c.(1288-1290)TCG>TTG	p.S430L	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	430	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		CAAGTATTATCGCAGAGCCTG	0.423													22	213					0	0	0.00278032	0	0
CREB1	1385	broad.mit.edu	37	2	208440042	208440042	+	Silent	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:208440042C>A	uc002vcc.2	+	7	845	c.594C>A	c.(592-594)ACC>ACA	p.T198T	CREB1_uc010ziz.1_Silent_p.T182T|CREB1_uc002vcd.2_Silent_p.T184T|CREB1_uc010zja.1_RNA	NM_134442	NP_604391	P16220	CREB1_HUMAN	cAMP responsive element binding protein 1	198					activation of phospholipase C activity|axon guidance|innate immune response|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of transcription from RNA polymerase II promoter|protein phosphorylation|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway		protein dimerization activity|transcription cofactor activity		EWSR1/CREB1(42)	soft_tissue(42)|breast(1)|central_nervous_system(1)	44				LUSC - Lung squamous cell carcinoma(261;0.0768)|Epithelial(149;0.127)|Lung(261;0.145)	Adenosine monophosphate(DB00131)|Bromocriptine(DB01200)|Naloxone(DB01183)	ACAATGGTACCGATGGGGTAC	0.448			T	EWSR1	clear cell sarcoma|angiomatoid fibrous histiocytoma								5	76					0.00116845	0.00464689	0.00116845	1	0
MYL1	4632	broad.mit.edu	37	2	211163245	211163245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:211163245G>A	uc002vec.2	-	3	332	c.203C>T	c.(202-204)TCC>TTC	p.S68F	MYL1_uc002veb.2_Missense_Mutation_p.S24F	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	68	EF-hand 1.				muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		GGTGATCTTGGAATCACCTGT	0.448													12	42					0	0	0.00185496	0	0
ERBB4	2066	broad.mit.edu	37	2	212252714	212252714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:212252714C>T	uc002veg.1	-	26	3237	c.3139G>A	c.(3139-3141)GAA>AAA	p.E1047K	ERBB4_uc002veh.1_Intron|ERBB4_uc010zji.1_Missense_Mutation_p.E1037K|ERBB4_uc010zjj.1_Intron	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	1047	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TGTCCAATTTCACTCTAATAG	0.368										TSP Lung(8;0.080)			14	126					0	0	0.000308642	0	0
IKZF2	22807	broad.mit.edu	37	2	213872193	213872193	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:213872193C>A	uc002vem.2	-	8	1641	c.1472G>T	c.(1471-1473)GGT>GTT	p.G491V	IKZF2_uc010fuu.2_Missense_Mutation_p.G346V|IKZF2_uc002vej.2_Missense_Mutation_p.G438V|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.G417V|IKZF2_uc002vel.2_Missense_Mutation_p.G412V|IKZF2_uc010fuw.2_Missense_Mutation_p.G265V|IKZF2_uc010fux.2_Missense_Mutation_p.G265V|IKZF2_uc010fuy.2_Missense_Mutation_p.G419V|IKZF2_uc002ven.2_Missense_Mutation_p.G465V|IKZF2_uc002vei.2_Missense_Mutation_p.G269V	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	491	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		GCCATGGCAACCCATGTGAAT	0.498													4	40					0.00024832	0.000992549	0.00024832	1	0
ABCA12	26154	broad.mit.edu	37	2	215821458	215821458	+	Silent	SNP	C	T	T	rs143237945	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:215821458C>T	uc002vew.2	-	42	6382	c.6162G>A	c.(6160-6162)GCG>GCA	p.A2054A	ABCA12_uc002vev.2_Silent_p.A1736A|ABCA12_uc010zjn.1_Silent_p.A981A	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2054	Helical; (Potential).				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ATTTGAAAATCGCAATGATAC	0.358													14	81					0	0	0.00074312	0	0
ABCA12	26154	broad.mit.edu	37	2	215839503	215839503	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:215839503G>A	uc002vew.2	-	35	5687	c.5467C>T	c.(5467-5469)CTA>TTA	p.L1823L	ABCA12_uc002vev.2_Silent_p.L1505L|ABCA12_uc010zjn.1_Silent_p.L750L	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1823					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ACCACTTACAGATCACTGGTG	0.338													13	93					0	0	0.000422831	0	0
FN1	2335	broad.mit.edu	37	2	216251560	216251560	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:216251560G>A	uc002vfa.2	-	28	4730	c.4464C>T	c.(4462-4464)TTC>TTT	p.F1488F	FN1_uc002vfb.2_Silent_p.F1397F|FN1_uc002vfc.2_Silent_p.F1397F|FN1_uc002vfd.2_Silent_p.F1488F|FN1_uc002vfe.2_Silent_p.F1397F|FN1_uc002vff.2_Silent_p.F1397F|FN1_uc002vfg.2_Silent_p.F1397F|FN1_uc002vfh.2_Silent_p.F1397F|FN1_uc002vfi.2_Silent_p.F1488F|FN1_uc002vfj.2_Silent_p.F1488F|FN1_uc002vez.2_5'UTR|FN1_uc010zjp.1_Silent_p.F115F	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTCTCCCACTGAAGTGCTCGG	0.532													6	36					0	0	0.00198382	0	0
ZNF142	7701	broad.mit.edu	37	2	219508926	219508926	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:219508926G>A	uc002vin.2	-	8	2749	c.2313C>T	c.(2311-2313)TCC>TCT	p.S771S	ZNF142_uc002vil.2_Silent_p.S732S|ZNF142_uc010fvt.2_Silent_p.S608S|ZNF142_uc002vim.2_Silent_p.S608S	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	771					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		CCTCCTCTAAGGATGGAGGAT	0.493													11	84					0	0	0.000673444	0	0
DES	1674	broad.mit.edu	37	2	220285063	220285063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:220285063G>A	uc002vll.2	+	3	816	c.730G>A	c.(730-732)GAA>AAA	p.E244K		NM_001927	NP_001918	P17661	DESM_HUMAN	desmin	244	Rod.|Coil 1B.				cytoskeleton organization|muscle filament sliding|regulation of heart contraction	cytosol|Z disc	protein binding|structural constituent of cytoskeleton			central_nervous_system(2)	2		Renal(207;0.0183)		Epithelial(149;5.25e-07)|all cancers(144;0.000103)|Lung(261;0.00533)|LUSC - Lung squamous cell carcinoma(224;0.008)		GAAAGTGCATGAAGAGGTATA	0.567													5	26					0	0	0.000157383	0	0
DES	1674	broad.mit.edu	37	2	220286089	220286089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:220286089G>A	uc002vll.2	+	6	1137	c.1051G>A	c.(1051-1053)GAA>AAA	p.E351K		NM_001927	NP_001918	P17661	DESM_HUMAN	desmin	351	Rod.|Coil 2B.				cytoskeleton organization|muscle filament sliding|regulation of heart contraction	cytosol|Z disc	protein binding|structural constituent of cytoskeleton			central_nervous_system(2)	2		Renal(207;0.0183)		Epithelial(149;5.25e-07)|all cancers(144;0.000103)|Lung(261;0.00533)|LUSC - Lung squamous cell carcinoma(224;0.008)		GCAGATGCGGGAATTGGAGGA	0.587													6	31					0	0	0.000157383	0	0
SPEG	10290	broad.mit.edu	37	2	220354299	220354299	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:220354299G>A	uc010fwg.2	+	36	8559	c.8559G>A	c.(8557-8559)CAG>CAA	p.Q2853Q		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2853	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GGGGCCTGCAGGCTGCCCGGC	0.667													5	52					0	0	0.000602214	0	0
SLC4A3	6508	broad.mit.edu	37	2	220500098	220500098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:220500098G>A	uc002vmp.3	+	13	2121	c.1852G>A	c.(1852-1854)GGC>AGC	p.G618S	SLC4A3_uc002vmo.3_Missense_Mutation_p.G645S|SLC4A3_uc010fwm.2_Missense_Mutation_p.G168S|SLC4A3_uc010fwn.1_Missense_Mutation_p.G127S	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	618	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGAGGTGGAGGGCCGTGACCT	0.617													7	38					0	0	0.000274275	0	0
SLC4A3	6508	broad.mit.edu	37	2	220504252	220504252	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:220504252C>T	uc002vmp.3	+	20	3341	c.3072C>T	c.(3070-3072)TTC>TTT	p.F1024F	SLC4A3_uc002vmo.3_Silent_p.F1051F|SLC4A3_uc010fwm.2_Silent_p.F574F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	1024	Membrane (anion exchange).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCTCCGGTTTCCACCTGGACC	0.682													8	32					0	0	0.000442599	0	0
EPHA4	2043	broad.mit.edu	37	2	222347164	222347164	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:222347164T>A	uc002vmq.2	-	5	1268	c.1226A>T	c.(1225-1227)TAC>TTC	p.Y409F	EPHA4_uc002vmr.2_Missense_Mutation_p.Y409F|EPHA4_uc010zlm.1_Missense_Mutation_p.Y350F|EPHA4_uc010zln.1_Missense_Mutation_p.Y409F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	409	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TTCAAAGGTGTAATTGGTATG	0.493													34	188					0	0	0.00170553	0	0
EPHA4	2043	broad.mit.edu	37	2	222347190	222347190	+	Silent	SNP	G	A	A	rs55713430		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:222347190G>A	uc002vmq.2	-	5	1242	c.1200C>T	c.(1198-1200)ATC>ATT	p.I400I	EPHA4_uc002vmr.2_Silent_p.I400I|EPHA4_uc010zlm.1_Silent_p.I341I|EPHA4_uc010zln.1_Silent_p.I400I	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	400	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		GGAGGTCAGTGATGGAGACTT	0.502													21	231					0	0	0.00278032	0	0
SCG2	7857	broad.mit.edu	37	2	224463503	224463503	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:224463503G>A	uc002vnm.2	-	2	631	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	166					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		ACATAGGAGGGAATTGCATGT	0.408													23	93					0	0	0.00278032	0	0
DOCK10	55619	broad.mit.edu	37	2	225729299	225729299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:225729299G>A	uc010fwz.1	-	13	1812	c.1573C>T	c.(1573-1575)CCT>TCT	p.P525S	DOCK10_uc002vob.2_Missense_Mutation_p.P519S|DOCK10_uc002vod.1_Missense_Mutation_p.P525S	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	525							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		TTAATATAAGGTTCGGCACCA	0.299													7	32					0	0	0.00198382	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446710	226446710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:226446710C>T	uc002voe.2	+	4	752	c.577C>T	c.(577-579)CCC>TCC	p.P193S	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	193										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GATTCCTCCTCCCAAACCGAA	0.478													27	123					0	0	0.00106085	0	0
COL4A4	1286	broad.mit.edu	37	2	227886850	227886850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:227886850C>T	uc010zlt.1	-	43	4784	c.4130G>A	c.(4129-4131)CGA>CAA	p.R1377Q		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1377	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCCTGGGATTCGGGGACAGTC	0.582													8	122					0	0	0.000274275	0	0
COL4A4	1286	broad.mit.edu	37	2	227924939	227924939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:227924939G>A	uc010zlt.1	-	27	2731	c.2077C>T	c.(2077-2079)CCC>TCC	p.P693S		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	693	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		GCACCTTGGGGACCTGGAAAT	0.443													8	100					0	0	0.000157383	0	0
SLC19A3	80704	broad.mit.edu	37	2	228552239	228552239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:228552239C>T	uc002vpi.2	-	6	1454	c.1365G>A	c.(1363-1365)ATG>ATA	p.M455I	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.M451I	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	455	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	ACATGCTTCTCATTAGGAAAA	0.383													6	77					0	0	0.000157383	0	0
SPHKAP	80309	broad.mit.edu	37	2	228855857	228855857	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:228855857C>T	uc002vpq.2	-	11	4865	c.4818G>A	c.(4816-4818)AGG>AGA	p.R1606R	SPHKAP_uc002vpp.2_Silent_p.R1577R|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1606						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCAGCAGGCTCCTCTGGGGGC	0.582													5	21					0	0	0.000602214	0	0
SPHKAP	80309	broad.mit.edu	37	2	228855998	228855998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:228855998C>T	uc002vpq.2	-	10	4813	c.4766G>A	c.(4765-4767)AGC>AAC	p.S1589N	SPHKAP_uc002vpp.2_Missense_Mutation_p.S1560N|SPHKAP_uc010zlx.1_Intron	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1589						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		ACCCTCTGTGCTTTCTGACTG	0.408													9	99					0	0	0.000442599	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882851	228882851	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:228882851C>T	uc002vpq.2	-	7	2766	c.2719G>A	c.(2719-2721)GAC>AAC	p.D907N	SPHKAP_uc002vpp.2_Missense_Mutation_p.D907N|SPHKAP_uc010zlx.1_Missense_Mutation_p.D907N	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	907						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		AGCAGCAGGTCATCCCCTAAC	0.488													36	126					0	0	0.000953801	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883126	228883126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:228883126G>A	uc002vpq.2	-	7	2491	c.2444C>T	c.(2443-2445)TCA>TTA	p.S815L	SPHKAP_uc002vpp.2_Missense_Mutation_p.S815L|SPHKAP_uc010zlx.1_Missense_Mutation_p.S815L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	815						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GTGACTACGTGATAATTGTGA	0.458													7	102					0	0	0.000442599	0	0
DNER	92737	broad.mit.edu	37	2	230231825	230231825	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:230231825C>T	uc002vpv.2	-	12	2013	c.1866G>A	c.(1864-1866)TGG>TGA	p.W622*		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	622	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		GCCCGGACTTCCATTGGAGGT	0.483													6	28					0	0	0.000157383	0	0
SP140	11262	broad.mit.edu	37	2	231102934	231102934	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:231102934C>T	uc002vql.2	+	3	359	c.244C>T	c.(244-246)CAA>TAA	p.Q82*	SP140_uc010zma.1_RNA|SP140_uc002vqj.2_Nonsense_Mutation_p.Q82*|SP140_uc002vqk.2_Nonsense_Mutation_p.Q82*|SP140_uc002vqn.2_Nonsense_Mutation_p.Q82*|SP140_uc002vqm.2_Nonsense_Mutation_p.Q82*|SP140_uc010fxl.2_Nonsense_Mutation_p.Q82*	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	82	HSR.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TAAGCATTTTCAAGAAGCTTT	0.358													6	55					0	0	0.00116845	0	0
SP140	11262	broad.mit.edu	37	2	231103033	231103033	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:231103033T>C	uc002vql.2	+	3	458	c.343T>C	c.(343-345)TTC>CTC	p.F115L	SP140_uc010zma.1_RNA|SP140_uc002vqj.2_Missense_Mutation_p.F115L|SP140_uc002vqk.2_Missense_Mutation_p.F115L|SP140_uc002vqn.2_Missense_Mutation_p.F115L|SP140_uc002vqm.2_Missense_Mutation_p.F115L|SP140_uc010fxl.2_Missense_Mutation_p.F115L	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	115	HSR.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		GGAAGCATTGTTCAGCAGGAT	0.433													10	55					0	0	0.000442599	0	0
SP140	11262	broad.mit.edu	37	2	231159024	231159024	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:231159024G>A	uc002vql.2	+	21	2122	c.2007G>A	c.(2005-2007)AGG>AGA	p.R669R	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Silent_p.R555R|SP140_uc002vqm.2_Silent_p.R609R|SP140_uc010fxl.2_Silent_p.R642R	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	669					defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TACGTTACAGGAAAAAAAAGG	0.373													6	40					0	0	0.00198382	0	0
CHRND	1144	broad.mit.edu	37	2	233393644	233393644	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:233393644C>T	uc002vsw.2	+	6	586	c.582C>T	c.(580-582)CCC>CCT	p.P194P	CHRND_uc010zmg.1_Silent_p.P179P|CHRND_uc010fyc.2_Intron|CHRND_uc010zmh.1_Intron	NM_000751	NP_000742	Q07001	ACHD_HUMAN	nicotinic acetylcholine receptor delta	194	Extracellular (Potential).				muscle contraction|musculoskeletal movement|neuromuscular process|skeletal muscle tissue growth|synaptic transmission	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)|breast(1)|skin(1)	3		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.89e-16)|BRCA - Breast invasive adenocarcinoma(100;0.00078)|Lung(119;0.00579)|LUSC - Lung squamous cell carcinoma(224;0.00754)		GCACCTACCCCGTGGAGTGGA	0.507													10	34					0	0	0.000978159	0	0
GIGYF2	26058	broad.mit.edu	37	2	233671241	233671241	+	Silent	SNP	G	A	A	rs142567233		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:233671241G>A	uc002vti.3	+	17	2017	c.1680G>A	c.(1678-1680)GCG>GCA	p.A560A	GIGYF2_uc010zmj.1_Silent_p.A560A|GIGYF2_uc002vtg.2_Silent_p.A554A|GIGYF2_uc002vtj.3_Silent_p.A581A|GIGYF2_uc002vtk.3_Silent_p.A560A|GIGYF2_uc002vth.3_Silent_p.A554A|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Silent_p.A391A	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	560	GYF.|Required for GRB10-binding (By similarity).				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GGTTTCAGGCGGGCTATTTTA	0.408													9	134					0	0	0.00185496	0	0
INPP5D	3635	broad.mit.edu	37	2	234079217	234079217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:234079217G>A	uc010zmo.1	+	15	2020	c.1867G>A	c.(1867-1869)GAG>AAG	p.E623K	INPP5D_uc010zmp.1_Missense_Mutation_p.E622K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	623					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GCTGCTCACAGAGAGGAGGGA	0.423													6	40					0	0	0.00198382	0	0
INPP5D	3635	broad.mit.edu	37	2	234091090	234091090	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:234091090C>T	uc010zmo.1	+	18	2259	c.2106C>T	c.(2104-2106)AGC>AGT	p.S702S	INPP5D_uc010zmp.1_Silent_p.S701S	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	702					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GTGACCACAGCCCTGTCTTTG	0.522													10	54					0	0	0.00136819	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638355	234638355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:234638355C>T	uc002vuy.2	+	1	583	c.583C>T	c.(583-585)CCT>TCT	p.P195S	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Missense_Mutation_p.P195S	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	195					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CTCCTATATTCCTAGATTACT	0.428													10	142					0	0	0.000978159	0	0
IQCA1	79781	broad.mit.edu	37	2	237276926	237276926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:237276926C>T	uc002vvz.1	-	14	1762	c.1580G>A	c.(1579-1581)GGG>GAG	p.G527E	IQCA1_uc002vwb.2_Missense_Mutation_p.G535E|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.G486E	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	527							ATP binding			ovary(1)	1						AAGAGTAGTCCCCAGGTAGCT	0.483													3	7					0	0	0.00024832	0	0
COL6A3	1293	broad.mit.edu	37	2	238296685	238296685	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:238296685G>A	uc002vwl.2	-	4	1137	c.852C>T	c.(850-852)GTC>GTT	p.V284V	COL6A3_uc002vwo.2_Silent_p.V78V|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Silent_p.V78V|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Silent_p.V284V	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	284	VWFA 2.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CGCTAAACTGGACCACCCCCA	0.532													5	62					0	0	0.000602214	0	0
GPR35	2859	broad.mit.edu	37	2	241570128	241570128	+	Silent	SNP	G	A	A	rs147827675		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:241570128G>A	uc002vzs.1	+	1	1334	c.759G>A	c.(757-759)ACG>ACA	p.T253T	GPR35_uc010fzh.1_Silent_p.T284T|GPR35_uc010fzi.1_Silent_p.T284T	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	253	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity	p.T253T(1)		skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		TCCTGGAGACGATCCGTCGCG	0.627													8	49					0	0	0.000274275	0	0
THAP4	51078	broad.mit.edu	37	2	242572754	242572754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:242572754C>T	uc002wbt.2	-	2	1041	c.818G>A	c.(817-819)AGC>AAC	p.S273N		NM_015963	NP_057047	Q8WY91	THAP4_HUMAN	THAP domain containing 4 isoform 1	273							DNA binding|metal ion binding				0		all_cancers(19;2.09e-34)|all_epithelial(40;2.09e-14)|Breast(86;0.000141)|Renal(207;0.0143)|all_lung(227;0.0344)|Ovarian(221;0.069)|Lung NSC(271;0.0886)|Esophageal squamous(248;0.131)|all_hematologic(139;0.182)|Melanoma(123;0.2)		Epithelial(32;2.3e-33)|all cancers(36;8.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.68e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0844)		GGGTCCCAGGCTGCTCCCACT	0.627													6	77					0	0	0.00198382	0	0
ING5	84289	broad.mit.edu	37	2	242644072	242644072	+	Silent	SNP	C	T	T	rs139118032	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:242644072C>T	uc002wcd.2	+	2	67	c.42C>T	c.(40-42)ATC>ATT	p.I14I	ING5_uc002wcc.1_Silent_p.I14I	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	14					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		TTTCAGGTATCGAGAACCTTC	0.428													8	138					0	0	0.000442599	0	0
ANGPT4	51378	broad.mit.edu	37	20	861886	861886	+	Silent	SNP	C	T	T	rs148851474		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:861886C>T	uc002wei.2	-	5	982	c.879G>A	c.(877-879)GAG>GAA	p.E293E	ANGPT4_uc010zpn.1_Silent_p.E287E	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	293	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						AGCGCTGGATCTCTGCACAGT	0.572													5	34					0	0	0.00198382	0	0
RSPO4	343637	broad.mit.edu	37	20	944609	944609	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:944609C>T	uc002wej.2	-	4	661	c.564G>A	c.(562-564)AGG>AGA	p.R188R	RSPO4_uc002wek.2_Intron	NM_001029871	NP_001025042	Q2I0M5	RSPO4_HUMAN	R-spondin family, member 4 isoform 1 precursor	188	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding				0						TGGGACATTTCCTTGACTCAG	0.667													8	64					0	0	0.000157383	0	0
TGM3	7053	broad.mit.edu	37	20	2308852	2308852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:2308852G>A	uc002wfx.3	+	9	1271	c.1174G>A	c.(1174-1176)GAG>AAG	p.E392K		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	392					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TATCTTCGCGGAGGTTAATGC	0.552													15	43					0	0	0.000308642	0	0
TGM3	7053	broad.mit.edu	37	20	2308866	2308866	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:2308866C>T	uc002wfx.3	+	9	1285	c.1188C>T	c.(1186-1188)GAC>GAT	p.D396D		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	396		Calcium (By similarity).			cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TTAATGCCGACCGCATCACCT	0.562													13	38					0	0	0.000308642	0	0
TGM6	343641	broad.mit.edu	37	20	2376066	2376066	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:2376066C>T	uc002wfy.1	+	3	469	c.408C>T	c.(406-408)TTC>TTT	p.F136F	TGM6_uc010gal.1_Silent_p.F136F	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	136					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	TTCTCCTTTTCAACCCATGGT	0.572													14	89					0	0	0.00121646	0	0
CPXM1	56265	broad.mit.edu	37	20	2776943	2776943	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:2776943G>A	uc002wgu.2	-	9	1256	c.1192C>T	c.(1192-1194)CAC>TAC	p.H398Y	CPXM1_uc010gas.2_Missense_Mutation_p.H398Y	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	398					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						GGCAGCAGGTGAATGCGCATC	0.627													5	32					0	0	0.000602214	0	0
FASTKD5	60493	broad.mit.edu	37	20	3129384	3129384	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:3129384G>A	uc002whz.2	-	2	644	c.333C>T	c.(331-333)TCC>TCT	p.S111S	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	111					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						TGTTTTCAAAGGAATCAAACA	0.468													10	65					0	0	0.000978159	0	0
DDRGK1	65992	broad.mit.edu	37	20	3172440	3172440	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:3172440G>A	uc002wic.2	-	7	722	c.700C>T	c.(700-702)CTG>TTG	p.L234L	DDRGK1_uc010gaw.2_RNA	NM_023935	NP_076424	Q96HY6	DDRGK_HUMAN	DDRGK domain containing 1 precursor	234	PCI.					endoplasmic reticulum	protein binding				0						TGGGAAGCCAGGTCTTCCAAG	0.582													4	11					0	0	0.000602214	0	0
ITPA	3704	broad.mit.edu	37	20	3193981	3193981	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:3193981G>A	uc002wid.2	+	3	283	c.141G>A	c.(139-141)GGG>GGA	p.G47G	ITPA_uc002wie.2_Silent_p.G30G|ITPA_uc002wif.2_RNA	NM_033453	NP_258412	Q9BY32	ITPA_HUMAN	inosine triphosphatase isoform a	47					nucleotide metabolic process	cytoplasm	metal ion binding|nucleoside-triphosphate diphosphatase activity|nucleotide binding			ovary(1)	1						AGTACCAGGGGGAGCCGGATG	0.488													9	52					0	0	0.000673444	0	0
PROKR2	128674	broad.mit.edu	37	20	5283145	5283145	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:5283145G>A	uc010zqw.1	-	2	696	c.696C>T	c.(694-696)TTC>TTT	p.F232F	PROKR2_uc010zqx.1_Silent_p.F232F|PROKR2_uc010zqy.1_Silent_p.F232F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	232	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CAGGGCCCACGAACTCGACAC	0.557										HNSCC(71;0.22)			10	60					0	0	0.000978159	0	0
C20orf196	149840	broad.mit.edu	37	20	5843758	5843758	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:5843758G>A	uc002wmf.2	+	3	354	c.267G>A	c.(265-267)AAG>AAA	p.K89K		NM_152504	NP_689717	Q8IYI0	CT196_HUMAN	hypothetical protein LOC149840	89											0						AGTCAGAGAAGGAAGAGGATG	0.463													10	62					0	0	0.000978159	0	0
CHGB	1114	broad.mit.edu	37	20	5903799	5903799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:5903799G>A	uc002wmg.2	+	4	1315	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	CHGB_uc010zqz.1_Missense_Mutation_p.E20K	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	337						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GGCTTCAGAGGAAGAACCTGA	0.527													12	75					0	0	0.00136819	0	0
FERMT1	55612	broad.mit.edu	37	20	6088216	6088216	+	Missense_Mutation	SNP	C	T	T	rs144791466		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:6088216C>T	uc002wmr.2	-	6	1601	c.812G>A	c.(811-813)CGA>CAA	p.R271Q	FERMT1_uc010gbt.2_Missense_Mutation_p.R14Q|FERMT1_uc002wms.2_Missense_Mutation_p.R271Q|FERMT1_uc002wmt.2_Missense_Mutation_p.R14Q	NM_017671	NP_060141	Q9BQL6	FERM1_HUMAN	kindlin-1	271	FERM.				cell adhesion|establishment of epithelial cell polarity|keratinocyte migration|keratinocyte proliferation	cytosol|focal adhesion|ruffle membrane	binding			ovary(1)|pancreas(1)|skin(1)	3						ATATTTAAATCGTAAGAGCAG	0.373													9	60					0	0	0.000673444	0	0
PAK7	57144	broad.mit.edu	37	20	9546830	9546830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:9546830C>T	uc002wnl.2	-	6	1737	c.1192G>A	c.(1192-1194)GCT>ACT	p.A398T	PAK7_uc002wnk.2_Missense_Mutation_p.A398T|PAK7_uc002wnj.2_Missense_Mutation_p.A398T|PAK7_uc010gby.1_Missense_Mutation_p.A398T	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	398	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AGGTAGGAAGCCGTGGAGATG	0.617													6	48					0	0	0.00116845	0	0
ANKRD5	63926	broad.mit.edu	37	20	10025082	10025082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:10025082G>A	uc002wno.2	+	5	980	c.587G>A	c.(586-588)GGG>GAG	p.G196E	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.G196E|ANKRD5_uc010gbz.2_Missense_Mutation_p.G7E	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	196	ANK 2.						calcium ion binding			ovary(1)|breast(1)	2						TCAAGAGAAGGGGTAGTGGAA	0.448													22	124					0	0	0.00047179	0	0
JAG1	182	broad.mit.edu	37	20	10625538	10625538	+	Missense_Mutation	SNP	C	T	T	rs6032913		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:10625538C>T	uc002wnw.2	-	18	2833	c.2317G>A	c.(2317-2319)GGC>AGC	p.G773S	JAG1_uc010gcd.1_Missense_Mutation_p.G331S	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	773	Extracellular (Potential).|EGF-like 14.				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						CCCTCCCAGCCTTCCTTGCAG	0.582									Alagille_Syndrome				25	95					0	0	0.00106085	0	0
SPTLC3	55304	broad.mit.edu	37	20	13107318	13107318	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:13107318C>T	uc002wod.1	+	9	1522	c.1233C>T	c.(1231-1233)ATC>ATT	p.I411I		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	411					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	CAGAGCAAATCATCAGATCAC	0.483													22	117					0	0	0.00229938	0	0
FLRT3	23767	broad.mit.edu	37	20	14306382	14306382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:14306382C>T	uc002wov.1	-	3	2238	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K	MACROD2_uc002wot.2_Intron|MACROD2_uc002wou.2_Intron|FLRT3_uc002wow.1_Missense_Mutation_p.E591K	NM_198391	NP_938205	Q9NZU0	FLRT3_HUMAN	fibronectin leucine rich transmembrane protein 3	591	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			kidney(1)	1		Colorectal(1;0.0464)	COAD - Colon adenocarcinoma(2;0.129)	Colorectal(1;0.0393)		AAAGAAGTTTCCCTGATTTCC	0.413													12	65					0	0	0.00244969	0	0
PCSK2	5126	broad.mit.edu	37	20	17410135	17410135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:17410135G>A	uc002wpm.2	+	7	996	c.676G>A	c.(676-678)GGA>AGA	p.G226R	PCSK2_uc002wpl.2_Missense_Mutation_p.G207R|PCSK2_uc010zrm.1_Missense_Mutation_p.G191R	NM_002594	NP_002585	P16519	NEC2_HUMAN	proprotein convertase subtilisin/kexin type 2	226	Catalytic.				enkephalin processing|insulin processing|islet amyloid polypeptide processing	extracellular space|membrane|soluble fraction|transport vesicle	serine-type endopeptidase activity			ovary(3)|central_nervous_system(2)|large_intestine(1)|pancreas(1)	7					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CAATATCTGTGGAGTTGGAGT	0.488													17	67					0	0	0.00121646	0	0
C20orf26	26074	broad.mit.edu	37	20	20056178	20056178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:20056178G>A	uc002wru.2	+	6	561	c.485G>A	c.(484-486)TGT>TAT	p.C162Y	C20orf26_uc010gcw.1_Missense_Mutation_p.C116Y|C20orf26_uc010zse.1_Missense_Mutation_p.C162Y|C20orf26_uc010zsf.1_Missense_Mutation_p.C162Y	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	162										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AACATCCCGTGTCTGACGTAT	0.438													23	128					0	0	0.000878237	0	0
C20orf26	26074	broad.mit.edu	37	20	20232362	20232362	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:20232362C>T	uc002wru.2	+	20	2359	c.2283C>T	c.(2281-2283)ATC>ATT	p.I761I	C20orf26_uc010zse.1_Silent_p.I741I|C20orf26_uc002wrw.2_RNA|C20orf26_uc002wrv.2_Silent_p.I117I	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	761										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CGGACGAGATCGTGCCCTACG	0.597													11	46					0	0	0.000673444	0	0
CD93	22918	broad.mit.edu	37	20	23066197	23066197	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:23066197G>A	uc002wsv.2	-	1	781	c.633C>T	c.(631-633)TCC>TCT	p.S211S		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	211	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					CAGCCTCCAAGGAGGAACTGG	0.597													4	47					0	0	0.00024832	0	0
FRG1B	284802	broad.mit.edu	37	20	29628251	29628251	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:29628251A>G	uc010ztl.1	+	3	195	c.163A>G	c.(163-165)AAT>GAT	p.N55D	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.N7D					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTTGGCCTCAAATAGCTGCTT	0.358													5	67					0	0	0.000442599	0	0
DEFB119	245932	broad.mit.edu	37	20	29965177	29965177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:29965177C>T	uc002wvt.2	-	2	247	c.127G>A	c.(127-129)GAA>AAA	p.E43K	DEFB119_uc002wvs.2_3'UTR	NM_153289	NP_695021	Q8N690	DB119_HUMAN	defensin, beta 119 isoform a precursor	43					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TAGGGCTGTTCGTTCTTTTTG	0.433													20	117					0	0	0.000720815	0	0
TM9SF4	9777	broad.mit.edu	37	20	30747905	30747905	+	Silent	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:30747905G>T	uc002wxj.2	+	16	1915	c.1680G>T	c.(1678-1680)CTG>CTT	p.L560L	TM9SF4_uc010zts.1_Silent_p.L467L|TM9SF4_uc002wxk.2_Silent_p.L543L|TM9SF4_uc010gdz.2_Silent_p.L439L	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	560						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			ACTTCCAGCTGTGTGCAGAGG	0.537													7	51					1.12685e-05	4.51358e-05	0.000274275	1	0
TM9SF4	9777	broad.mit.edu	37	20	30753238	30753238	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:30753238G>A	uc002wxj.2	+	18	2155	c.1920G>A	c.(1918-1920)AAG>AAA	p.K640K	TM9SF4_uc010zts.1_Silent_p.K547K|TM9SF4_uc002wxk.2_Silent_p.K623K|TM9SF4_uc010gdz.2_Silent_p.K519K	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	640						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CTGCTGTGAAGATAGACTGAT	0.542													10	43					0	0	0.000673444	0	0
DNMT3B	1789	broad.mit.edu	37	20	31395665	31395665	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:31395665C>T	uc002wyc.2	+	23	2839	c.2518C>T	c.(2518-2520)CGA>TGA	p.R840*	DNMT3B_uc002wyd.2_Nonsense_Mutation_p.R820*|DNMT3B_uc002wye.2_Nonsense_Mutation_p.R757*|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Nonsense_Mutation_p.R715*|DNMT3B_uc010zua.1_Nonsense_Mutation_p.R681*|DNMT3B_uc002wyf.2_Nonsense_Mutation_p.R832*|DNMT3B_uc002wyg.2_Nonsense_Mutation_p.R476*|DNMT3B_uc010geg.2_Missense_Mutation_p.P99L|DNMT3B_uc010geh.2_RNA	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	840			R -> Q (in ICF).		negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						GCCTGTCATCCGACACCTCTT	0.602													16	71					0	0	0.000958276	0	0
BPIL3	128859	broad.mit.edu	37	20	31627282	31627282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:31627282C>T	uc010zuc.1	+	10	1030	c.1030C>T	c.(1030-1032)CGG>TGG	p.R344W	BPIL3_uc010zud.1_Missense_Mutation_p.R283W	NM_174897	NP_777557	Q8NFQ5	BPIL3_HUMAN	bactericidal/permeability-increasing	344						extracellular region	lipid binding			ovary(1)|pancreas(1)	2						GTTCGCAGCTCGGTGGCGGAG	0.527													10	107					0	0	0.000978159	0	0
C20orf185	359710	broad.mit.edu	37	20	31644491	31644491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:31644491G>A	uc002wym.1	+	2	268	c.268G>A	c.(268-270)GAG>AAG	p.E90K		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	90	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						TGGCGTTGTCGAGGAGCTCTC	0.582													5	37					0	0	0.00116845	0	0
PLUNC	51297	broad.mit.edu	37	20	31827688	31827688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:31827688C>T	uc002wyv.2	+	4	470	c.400C>T	c.(400-402)CCT>TCT	p.P134S	PLUNC_uc002wyt.3_Missense_Mutation_p.P134S|PLUNC_uc002wyu.3_Missense_Mutation_p.P134S	NM_130852	NP_570913	Q9NP55	PLUNC_HUMAN	palate, lung and nasal epithelium associated	134					innate immune response	extracellular region	lipid binding				0						TGTCACCATCCCTCTCGGCAT	0.468													13	88					0	0	0.00244969	0	0
ZNF341	84905	broad.mit.edu	37	20	32332926	32332926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:32332926C>T	uc002wzy.2	+	3	180	c.160C>T	c.(160-162)CTC>TTC	p.L54F	ZNF341_uc002wzx.2_Missense_Mutation_p.L54F|ZNF341_uc010geq.2_Intron|ZNF341_uc010ger.2_RNA	NM_032819	NP_116208	Q9BYN7	ZN341_HUMAN	zinc finger protein 341	54	C2H2-type 1; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGATGTATTTCTCTGCGGGAA	0.522													8	78					0	0	0.000442599	0	0
ITCH	83737	broad.mit.edu	37	20	33026303	33026303	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:33026303C>T	uc010geu.1	+	9	861	c.669C>T	c.(667-669)GAC>GAT	p.D223D	ITCH_uc002xak.2_Silent_p.D182D|ITCH_uc010zuj.1_Silent_p.D72D	NM_031483	NP_113671	Q96J02	ITCH_HUMAN	itchy homolog E3 ubiquitin protein ligase	223					apoptosis|entry of virus into host cell|inflammatory response|innate immune response|negative regulation of apoptosis|negative regulation of defense response to virus|negative regulation of JNK cascade|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K29-linked ubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cell growth|regulation of protein deubiquitination|response to virus	cytosol|nucleus|plasma membrane	CXCR chemokine receptor binding|ribonucleoprotein binding|ubiquitin-protein ligase activity			breast(4)|lung(1)|central_nervous_system(1)	6						GATCAGATGACCCTGAAGATG	0.423													10	81					0	0	0.00185496	0	0
NCOA6	23054	broad.mit.edu	37	20	33364185	33364186	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:33364185_33364186GG>AA	uc002xav.2	-	5	2872_2873	c.301_302CC>TT	c.(301-303)CCC>TTC	p.P101F	NCOA6_uc002xaw.2_Missense_Mutation_p.P101F|NCOA6_uc010gew.1_Missense_Mutation_p.P101F	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	101	TBP/GTF2A-binding region.|NCOA1-binding region.|CREBBP-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						TGCTTCCCGGGGGATGTTGAAT	0.465													7	54					0	0	6.4e-05	0	0
GSS	2937	broad.mit.edu	37	20	33533870	33533870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:33533870G>A	uc002xbg.2	-	3	241	c.161C>T	c.(160-162)CCC>CTC	p.P54L	GSS_uc010zun.1_5'UTR|GSS_uc010zuo.1_Missense_Mutation_p.P54L|GSS_uc010zup.1_Intron|GSS_uc002xbh.2_RNA|GSS_uc010gez.1_5'UTR	NM_000178	NP_000169	P48637	GSHB_HUMAN	glutathione synthetase	54					nervous system development|response to oxidative stress|xenobiotic metabolic process	cytosol	ATP binding|glutathione binding|glutathione synthase activity|magnesium ion binding|protein homodimerization activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(18;0.035)		Glutathione(DB00143)|Glycine(DB00145)|L-Cysteine(DB00151)	GACCAGTGAGGGGAAGAGCGT	0.567													15	105					0	0	0.00074312	0	0
SAMHD1	25939	broad.mit.edu	37	20	35526915	35526915	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:35526915C>T	uc002xgh.1	-	14	1666	c.1536G>A	c.(1534-1536)AAG>AAA	p.K512K	SAMHD1_uc010gft.1_Intron	NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	512					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				CAATTGGATTCTTTTCTTGCA	0.368													17	116					0	0	0.00152264	0	0
LBP	3929	broad.mit.edu	37	20	36997666	36997666	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:36997666C>T	uc002xic.1	+	10	1044	c.1009C>T	c.(1009-1011)CTG>TTG	p.L337L		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	337					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				CAACATGAACCTGGAACTCCA	0.512													5	66					0	0	0.00116845	0	0
CHD6	84181	broad.mit.edu	37	20	40126089	40126089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:40126089G>A	uc002xka.1	-	8	1205	c.1027C>T	c.(1027-1029)CGC>TGC	p.R343C	CHD6_uc002xkd.2_Missense_Mutation_p.R321C|CHD6_uc002xkc.2_3'UTR	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	343	Chromo 1.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TGTGCGATGCGAGGATCCTTT	0.413													11	71					0	0	0.00136819	0	0
PTPRT	11122	broad.mit.edu	37	20	40735493	40735493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:40735493C>T	uc002xkg.2	-	24	3507	c.3323G>A	c.(3322-3324)GGG>GAG	p.G1108E	PTPRT_uc010ggj.2_Missense_Mutation_p.G1127E|PTPRT_uc010ggi.2_Missense_Mutation_p.G311E	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1108	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTCCACCACCCCTTCATTCTC	0.577													15	49					0	0	0.00244969	0	0
PTPRT	11122	broad.mit.edu	37	20	40944562	40944562	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:40944562G>A	uc002xkg.2	-	12	2124	c.1940C>T	c.(1939-1941)TCG>TTG	p.S647L	PTPRT_uc010ggj.2_Missense_Mutation_p.S647L	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	647	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CACGGGCACCGAAAAGCACTC	0.517													11	54					0	0	0.000978159	0	0
PTPRT	11122	broad.mit.edu	37	20	40980835	40980835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:40980835G>A	uc002xkg.2	-	10	1835	c.1651C>T	c.(1651-1653)CAC>TAC	p.H551Y	PTPRT_uc010ggj.2_Missense_Mutation_p.H551Y	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	551	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ACAAAGAGGTGGTGGGTTTCA	0.572													10	56					0	0	0.000978159	0	0
HNF4A	3172	broad.mit.edu	37	20	43030087	43030088	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:43030087_43030088CC>AA	uc002xma.2	+	1	164_165	c.75_76CC>AA	c.(73-78)ACCCTG>ACAATG	p.L26M	HNF4A_uc010zwo.1_Intron|HNF4A_uc002xlt.2_Intron|HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Intron|uc002xlw.1_Intron|HNF4A_uc002xly.2_Missense_Mutation_p.L26M|HNF4A_uc002xlz.2_Missense_Mutation_p.L26M|HNF4A_uc010ggq.2_Translation_Start_Site	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	26					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCTACACCACCCTGGAATTTGA	0.619													9	211					0	0	6.4e-05	0	0
HNF4A	3172	broad.mit.edu	37	20	43034848	43034848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:43034848G>A	uc002xma.2	+	2	355	c.266G>A	c.(265-267)CGG>CAG	p.R89Q	HNF4A_uc010zwo.1_Missense_Mutation_p.G80R|HNF4A_uc002xlt.2_Missense_Mutation_p.R67Q|HNF4A_uc002xlu.2_Missense_Mutation_p.R67Q|HNF4A_uc002xlv.2_Missense_Mutation_p.R67Q|HNF4A_uc002xly.2_Missense_Mutation_p.R89Q|HNF4A_uc002xlz.2_Missense_Mutation_p.R89Q|HNF4A_uc010ggq.2_Missense_Mutation_p.R82Q	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	89	Nuclear receptor.				blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			AGGAGCGTGCGGAAGAACCAC	0.537													29	107					0	0	0.00178596	0	0
CDH22	64405	broad.mit.edu	37	20	44815246	44815246	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:44815246G>A	uc002xrm.2	-	9	2045	c.1644C>T	c.(1642-1644)TTC>TTT	p.F548F	CDH22_uc010ghk.1_Silent_p.F548F	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	548	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CAAGCAGAGAGAAATGAGGGT	0.577													8	36					0	0	0.000274275	0	0
ZNF334	55713	broad.mit.edu	37	20	45131398	45131398	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:45131398C>T	uc002xsc.2	-	5	764	c.580G>A	c.(580-582)GAA>AAA	p.E194K	ZNF334_uc002xsa.2_Missense_Mutation_p.E217K|ZNF334_uc002xsb.2_Missense_Mutation_p.E156K|ZNF334_uc002xsd.2_Missense_Mutation_p.E156K|ZNF334_uc010ghl.2_Missense_Mutation_p.E193K	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	194					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				ATAAGATTTTCGTTTTGATTG	0.363													8	110					0	0	0.000442599	0	0
ZNF334	55713	broad.mit.edu	37	20	45131407	45131407	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:45131407T>G	uc002xsc.2	-	5	755	c.571A>C	c.(571-573)AAT>CAT	p.N191H	ZNF334_uc002xsa.2_Missense_Mutation_p.N214H|ZNF334_uc002xsb.2_Missense_Mutation_p.N153H|ZNF334_uc002xsd.2_Missense_Mutation_p.N153H|ZNF334_uc010ghl.2_Missense_Mutation_p.N190H	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	191					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				TCGTTTTGATTGCTGGCTTTC	0.358													13	104					0	0	0.00244969	0	0
SALL4	57167	broad.mit.edu	37	20	50407914	50407914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:50407914C>T	uc002xwh.3	-	2	1209	c.1108G>A	c.(1108-1110)GAT>AAT	p.D370N	SALL4_uc010gii.2_Missense_Mutation_p.D370N|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	370					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGTTTGACATCCACCGCGGAG	0.567													7	65					0	0	0.000442599	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871244	51871244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:51871244G>A	uc002xwo.2	+	2	2203	c.1247G>A	c.(1246-1248)GGG>GAG	p.G416E		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	416					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TCCAAGAAAGGGAAGCAGCTG	0.532													24	107					0	0	0.000878237	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872148	51872148	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:51872148C>T	uc002xwo.2	+	2	3107	c.2151C>T	c.(2149-2151)TCC>TCT	p.S717S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	717					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCTCACCTTCCTGCTCCAGCC	0.577													5	50					0	0	0.00198382	0	0
BCAS1	8537	broad.mit.edu	37	20	52583487	52583487	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:52583487T>A	uc002xws.2	-	9	1646	c.1308A>T	c.(1306-1308)GAA>GAT	p.E436D	BCAS1_uc010zza.1_Intron|BCAS1_uc010zzb.1_Missense_Mutation_p.E384D|BCAS1_uc010gim.2_Intron|BCAS1_uc002xwt.2_Missense_Mutation_p.E422D|BCAS1_uc010gil.1_Intron	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	436						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			TTGGTTTGCTTTCTTCTCTTT	0.453													13	166					0	0	0.000422831	0	0
DOK5	55816	broad.mit.edu	37	20	53260019	53260019	+	Missense_Mutation	SNP	G	A	A	rs145562960		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:53260019G>A	uc002xwy.2	+	7	978	c.758G>A	c.(757-759)CGG>CAG	p.R253Q	DOK5_uc010gin.2_Missense_Mutation_p.R145Q|DOK5_uc002xwz.2_Missense_Mutation_p.R115Q	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	253							insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			ATGAGTGAGCGGGCCGCCTCG	0.607													6	39					0	0	0.00116845	0	0
MC3R	4159	broad.mit.edu	37	20	54823928	54823928	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:54823928T>C	uc002xxb.2	+	1	141	c.29T>C	c.(28-30)GTT>GCT	p.V10A		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	47	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			CTGCCCTCTGTTCAGCCAACA	0.587													20	106					0	0	0.00188189	0	0
C20orf108	116151	broad.mit.edu	37	20	54941148	54941148	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:54941148C>T	uc002xxc.2	+	3	463	c.384C>T	c.(382-384)ATC>ATT	p.I128I		NM_080821	NP_543011	Q96KR6	CT108_HUMAN	hypothetical protein LOC116151	128	DUF1279.					integral to membrane					0			Colorectal(105;0.202)			TGCCTGCAATCCTGCTGAAAC	0.438													5	53					0	0	0.00198382	0	0
CASS4	57091	broad.mit.edu	37	20	55012399	55012399	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:55012399G>A	uc002xxp.2	+	3	441	c.216G>A	c.(214-216)ACG>ACA	p.T72T	CASS4_uc002xxq.3_Silent_p.T72T|CASS4_uc002xxr.2_Silent_p.T72T|CASS4_uc010zze.1_Silent_p.T72T|CASS4_uc010gio.2_Silent_p.T72T	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	72	SH3.				cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AAATCCTCACGGAGGTCGCTG	0.627													9	21					0	0	0.000442599	0	0
CASS4	57091	broad.mit.edu	37	20	55027342	55027342	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:55027342G>A	uc002xxp.2	+	6	1335	c.1110G>A	c.(1108-1110)AAG>AAA	p.K370K	CASS4_uc002xxq.3_Silent_p.K370K|CASS4_uc002xxr.2_Silent_p.K370K|CASS4_uc010zze.1_Silent_p.K316K|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	370					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						AGAAAGCCAAGGAGGTGTCAG	0.512													6	46					0	0	0.00116845	0	0
BMP7	655	broad.mit.edu	37	20	55758884	55758884	+	Silent	SNP	C	T	T	rs147083949		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:55758884C>T	uc010gip.1	-	4	1381	c.852G>A	c.(850-852)ACG>ACA	p.T284T	BMP7_uc010giq.1_Intron|BMP7_uc002xyc.2_Silent_p.T284T	NM_001719	NP_001710	P18075	BMP7_HUMAN	bone morphogenetic protein 7 precursor	284					BMP signaling pathway|cartilage development|cellular response to hypoxia|epithelial to mesenchymal transition|growth|mesonephros development|negative regulation of glomerular mesangial cell proliferation|negative regulation of MAP kinase activity|negative regulation of mitosis|negative regulation of neuron differentiation|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of phosphorylation|negative regulation of striated muscle cell apoptosis|negative regulation of transcription, DNA-dependent|ossification|pathway-restricted SMAD protein phosphorylation|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|protein localization to nucleus|regulation of removal of superoxide radicals|SMAD protein signal transduction|steroid hormone mediated signaling pathway|ureteric bud development	extracellular space	cytokine activity|growth factor activity			skin(1)	1	all_lung(29;0.0133)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;2.49e-13)|Epithelial(14;1.74e-08)|all cancers(14;2.05e-07)			AGTGGACCTCCGTGGCCTTGA	0.642													6	32					0	0	0.00198382	0	0
ZBP1	81030	broad.mit.edu	37	20	56191463	56191463	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:56191463G>A	uc002xyo.2	-	2	377	c.96C>T	c.(94-96)GCC>GCT	p.A32A	ZBP1_uc010gjm.2_Silent_p.A32A|ZBP1_uc002xyp.2_Intron|ZBP1_uc010zzn.1_Silent_p.A32A	NM_030776	NP_110403	Q9H171	ZBP1_HUMAN	Z-DNA binding protein 1 isoform a	32	DRADA 1.					cytoplasm|nucleus	double-stranded RNA adenosine deaminase activity|left-handed Z-DNA binding|RNA binding			ovary(2)	2	Lung NSC(12;0.000545)|all_lung(29;0.00195)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;7.87e-13)|Epithelial(14;3.26e-09)|all cancers(14;3.62e-08)			TCACCAGCTGGGCAAGTTTCA	0.577													11	68					0	0	0.00244969	0	0
VAPB	9217	broad.mit.edu	37	20	57009663	57009663	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:57009663T>C	uc002xza.2	+	3	488	c.217T>C	c.(217-219)TTA>CTA	p.L73L	VAPB_uc002xzb.2_Intron|VAPB_uc010zzo.1_Intron|VAPB_uc002xzc.2_Intron	NM_004738	NP_004729	O95292	VAPB_HUMAN	VAMP-associated protein B/C	73	Cytoplasmic (Potential).|MSP.				cell death|endoplasmic reticulum unfolded protein response|positive regulation of viral genome replication|sphingolipid metabolic process|virus-host interaction	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	beta-tubulin binding|enzyme binding|protein heterodimerization activity|protein homodimerization activity|structural molecule activity			kidney(1)	1	Lung NSC(12;0.000615)|all_lung(29;0.00186)		BRCA - Breast invasive adenocarcinoma(13;6.2e-12)|Epithelial(14;3.7e-08)|all cancers(14;3.88e-07)			CTCAGTGATGTTACAGCCTTT	0.323													11	57					0	0	0.000673444	0	0
TUBB1	81027	broad.mit.edu	37	20	57599251	57599251	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:57599251A>G	uc002yak.2	+	4	1038	c.769A>G	c.(769-771)ATG>GTG	p.M257V		NM_030773	NP_110400	Q9H4B7	TBB1_HUMAN	beta tubulin 1, class VI	257					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity			ovary(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)		Colchicine(DB01394)|Docetaxel(DB01248)|Paclitaxel(DB01229)|Vindesine(DB00309)	GGCGGTGAACATGGTCCCCTT	0.642													5	22					0	0	0.000602214	0	0
SLMO2	51012	broad.mit.edu	37	20	57610109	57610109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:57610109C>T	uc002yam.2	-	6	654	c.538G>A	c.(538-540)GGA>AGA	p.G180R	ATP5E_uc002yal.2_5'Flank|SLMO2_uc010zzv.1_Missense_Mutation_p.G150R	NM_016045	NP_057129	Q9Y3B1	SLMO2_HUMAN	slowmo homolog 2	180										skin(1)	1	all_lung(29;0.00711)		Colorectal(105;0.109)			CTTATGGTTCCTCTTGCTGAG	0.428													8	32					0	0	0.000157383	0	0
ZNF831	128611	broad.mit.edu	37	20	57768659	57768659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:57768659C>T	uc002yan.2	+	1	2585	c.2585C>T	c.(2584-2586)CCC>CTC	p.P862L		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	862						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GATGCCGATCCCGGGGAGGTG	0.647													9	43					0	0	0.000274275	0	0
CDH26	60437	broad.mit.edu	37	20	58547080	58547080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:58547080G>A	uc002ybe.2	+	4	595	c.295G>A	c.(295-297)GAA>AAA	p.E99K	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	99	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			TGGTGTGGATGAATATCCAGA	0.398													27	80					0	0	0.00178596	0	0
CDH26	60437	broad.mit.edu	37	20	58564020	58564020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:58564020G>A	uc002ybe.2	+	9	1385	c.1085G>A	c.(1084-1086)AGG>AAG	p.R362K	CDH26_uc002ybf.1_5'UTR|CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	362	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			AATGAGGAGAGGCTCGTCTTC	0.572													7	54					0	0	0.00198382	0	0
CDH4	1002	broad.mit.edu	37	20	60511930	60511930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:60511930G>A	uc002ybn.1	+	16	2694	c.2680G>A	c.(2680-2682)GAT>AAT	p.D894N	CDH4_uc002ybp.1_Missense_Mutation_p.D820N|uc002ybr.1_5'Flank	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	894	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CCAAGACTACGATTACCTCAA	0.587													10	39					0	0	0.000978159	0	0
NTSR1	4923	broad.mit.edu	37	20	61341150	61341151	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:61341150_61341151CC>TT	uc002ydf.2	+	1	962_963	c.591_592CC>TT	c.(589-594)GCCCTG>GCTTTG	p.197_198AL>AL		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	197_198	Helical; Name=4; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			TCGCCTCGGCCCTGCTGGCGGT	0.668													11	42					0	0	6.4e-05	0	0
COL20A1	57642	broad.mit.edu	37	20	61956823	61956823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:61956823G>A	uc011aau.1	+	28	3425	c.3325G>A	c.(3325-3327)GAC>AAC	p.D1109N	COL20A1_uc011aav.1_Missense_Mutation_p.D930N	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	1109	Collagen-like 1.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					AGAGAAGGGAGACCATGGGCT	0.667													9	48					0	0	0.00244969	0	0
EEF1A2	1917	broad.mit.edu	37	20	62127379	62127379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:62127379C>T	uc002yfd.1	-	2	255	c.154G>A	c.(154-156)GGA>AGA	p.G52R	EEF1A2_uc002yfe.1_Missense_Mutation_p.G52R|EEF1A2_uc010gkg.1_Missense_Mutation_p.G52R	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	52						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			TTGAAGGATCCCTTCCCCATC	0.632											OREG0026129	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	29					0	0	0.00198382	0	0
PTK6	5753	broad.mit.edu	37	20	62164989	62164989	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:62164989C>T	uc002yfg.2	-	4	625	c.585G>A	c.(583-585)AGG>AGA	p.R195R	PTK6_uc011aay.1_Silent_p.R94R|PTK6_uc011aaz.1_5'Flank	NM_005975	NP_005966	Q13882	PTK6_HUMAN	PTK6 protein tyrosine kinase 6	195	Protein kinase.					cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|kidney(1)	2	all_cancers(38;2.51e-11)		Epithelial(9;1.5e-08)|all cancers(9;8.67e-08)|BRCA - Breast invasive adenocarcinoma(10;6.43e-06)			ACCCCAGCTTCCTGCAGAGCG	0.642													8	55					0	0	0.000673444	0	0
ZBTB46	140685	broad.mit.edu	37	20	62421503	62421503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:62421503G>A	uc002ygv.1	-	2	809	c.608C>T	c.(607-609)CCC>CTC	p.P203L	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	203					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					ATCGGCCTTGGGCTCCTGATC	0.607													7	25					0	0	0.00198382	0	0
PRPF6	24148	broad.mit.edu	37	20	62664292	62664292	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr20:62664292G>T	uc002yho.2	+	21	2940	c.2772G>T	c.(2770-2772)AAG>AAT	p.K924N	PRPF6_uc002yhp.2_Missense_Mutation_p.K884N|NCRNA00176_uc002yhq.2_5'Flank|NCRNA00176_uc011abq.1_5'Flank	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	924					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					ACTGGCAGAAGAAGATCGGGG	0.637													11	36					1.36491e-13	5.5019e-13	0.00185496	1	0
TPTE	7179	broad.mit.edu	37	21	10996079	10996079	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:10996079G>A	uc002yis.1	-	12		c.2107C>T						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCTGATCACAGATCTTTTGGT	0.368													5	62					0	0	0.000602214	0	0
LIPI	149998	broad.mit.edu	37	21	15537565	15537565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:15537565C>T	uc002yjm.2	-	6	953	c.943G>A	c.(943-945)GAA>AAA	p.E315K	LIPI_uc010gkw.1_Missense_Mutation_p.E218K	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	294					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		CATGATTTTTCCTTAAAACAG	0.318													10	41					0	0	0.000978159	0	0
CHODL	140578	broad.mit.edu	37	21	19629128	19629128	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:19629128C>A	uc002ykv.2	+	2	773	c.382C>A	c.(382-384)CAG>AAG	p.Q128K	CHODL_uc002ykr.2_Missense_Mutation_p.Q87K|CHODL_uc002yks.2_Missense_Mutation_p.Q87K|CHODL_uc002ykt.2_Missense_Mutation_p.Q87K|CHODL_uc002yku.2_Missense_Mutation_p.Q87K	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	128	Extracellular (Potential).|C-type lectin.				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		AAGCAATTCCCAGTACCGGTG	0.507													8	27					2.17888e-05	8.72377e-05	0.000442599	1	0
NCAM2	4685	broad.mit.edu	37	21	22906900	22906900	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:22906900G>A	uc002yld.1	+	17	2574	c.2325G>A	c.(2323-2325)GAG>GAA	p.E775E	NCAM2_uc011acb.1_Silent_p.E633E	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	775	Cytoplasmic (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		TGAGAACAGAGGATGAAAGAG	0.403													4	32					0	0	0.00024832	0	0
JAM2	58494	broad.mit.edu	37	21	27066102	27066102	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:27066102C>T	uc002ylp.1	+	4	821	c.276C>T	c.(274-276)TTC>TTT	p.F92F	JAM2_uc011ace.1_Silent_p.F92F|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Silent_p.F56F|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Silent_p.F92F|JAM2_uc010gli.1_Silent_p.F92F	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	92	Ig-like V-type.|Extracellular (Potential).				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						TGATAGATTTCAATATCCGGA	0.383													7	70					0	0	0.000157383	0	0
CYYR1	116159	broad.mit.edu	37	21	27852613	27852613	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:27852613G>A	uc002ymd.2	-	3	634	c.312C>T	c.(310-312)ATC>ATT	p.I104I	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Silent_p.I104I	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	104	Cytoplasmic (Potential).					integral to membrane					0						AGACGGTGTTGATGTGAGTCG	0.502													7	48					0	0	0.000274275	0	0
RNF160	26046	broad.mit.edu	37	21	30303532	30303532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:30303532G>A	uc002ymr.2	-	29	5334	c.5321C>T	c.(5320-5322)TCC>TTC	p.S1774F		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1728	RING-type.						ligase activity|zinc ion binding				0						TTTGGGAAGGGAATAGTTGAA	0.343													7	112					0	0	0.000274275	0	0
GRIK1	2897	broad.mit.edu	37	21	30949498	30949498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:30949498G>A	uc002yno.1	-	14	2380	c.1916C>T	c.(1915-1917)TCA>TTA	p.S639L	GRIK1_uc002ynn.2_Missense_Mutation_p.S624L|GRIK1_uc011acs.1_Missense_Mutation_p.S639L|GRIK1_uc011act.1_Missense_Mutation_p.S500L	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	639	Cytoplasmic (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	CATCAGCTCTGATCCTGTGAT	0.443													6	56					0	0	0.000157383	0	0
GRIK1	2897	broad.mit.edu	37	21	30971201	30971201	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:30971201C>T	uc002yno.1	-	8	1619	c.1155G>A	c.(1153-1155)AGG>AGA	p.R385R	GRIK1_uc002ynn.2_Silent_p.R385R|GRIK1_uc011acs.1_Silent_p.R385R|GRIK1_uc011act.1_Silent_p.R329R|GRIK1_uc010glq.1_Silent_p.R243R|GRIK1_uc002ynr.2_Silent_p.R385R|uc002ynp.1_Intron	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	385	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	CAAAATCCTTCCTCAAGCCAT	0.363													19	107					0	0	0.00152264	0	0
CLDN17	26285	broad.mit.edu	37	21	31538577	31538577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:31538577C>T	uc011acv.1	-	1	359	c.359G>A	c.(358-360)GGA>GAA	p.G120E		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	120	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						TCCTGAAGTTCCCAGAAGGTA	0.517													12	59					0	0	0.00136819	0	0
CLDN17	26285	broad.mit.edu	37	21	31538598	31538598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:31538598C>T	uc011acv.1	-	1	338	c.338G>A	c.(337-339)AGG>AAG	p.R113K		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	113	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						TGCTTTGGCCCTCTCGTTAGA	0.542													9	51					0	0	0.000442599	0	0
TIAM1	7074	broad.mit.edu	37	21	32513747	32513747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:32513747G>A	uc002yow.1	-	22	4023	c.3551C>T	c.(3550-3552)TCG>TTG	p.S1184L	TIAM1_uc011adk.1_Missense_Mutation_p.S1184L|TIAM1_uc011adl.1_Missense_Mutation_p.S1124L	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1184	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GATGAGGTACGACTCCAGCGT	0.567													13	104					0	0	0.000566183	0	0
TIAM1	7074	broad.mit.edu	37	21	32624237	32624237	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:32624237T>C	uc002yow.1	-	6	1704	c.1232A>G	c.(1231-1233)GAG>GGG	p.E411G	TIAM1_uc011adk.1_Missense_Mutation_p.E411G|TIAM1_uc011adl.1_Missense_Mutation_p.E411G|TIAM1_uc002yox.1_Missense_Mutation_p.E19G	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	411					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						GCTGCTCTGCTCATCGCTGTG	0.697													4	49					0	0	0.000602214	0	0
ITSN1	6453	broad.mit.edu	37	21	35166652	35166652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:35166652G>A	uc002yta.1	+	17	2100	c.1832G>A	c.(1831-1833)AGA>AAA	p.R611K	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.R611K|ITSN1_uc010gmg.2_Missense_Mutation_p.R574K|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Missense_Mutation_p.R611K|ITSN1_uc010gmi.2_Missense_Mutation_p.R574K|ITSN1_uc010gmj.2_Missense_Mutation_p.R495K|ITSN1_uc002ysy.2_Missense_Mutation_p.R611K|ITSN1_uc002ysx.2_Missense_Mutation_p.R574K|ITSN1_uc002ytb.1_Missense_Mutation_p.R611K|ITSN1_uc002ytc.1_Missense_Mutation_p.R611K|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.R574K|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Missense_Mutation_p.R611K|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.R545K	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	611	Potential.|KLERQ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						TAGGAACTAAGAGAAATACAC	0.373													14	43					0	0	0.000422831	0	0
ITSN1	6453	broad.mit.edu	37	21	35206644	35206644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:35206644C>T	uc002yta.1	+	28	3653	c.3385C>T	c.(3385-3387)CCA>TCA	p.P1129S	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.P1053S|ITSN1_uc010gmg.2_Missense_Mutation_p.P1016S|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Missense_Mutation_p.P1129S|ITSN1_uc010gmi.2_Missense_Mutation_p.P1092S|ITSN1_uc010gmj.2_Missense_Mutation_p.P1008S|ITSN1_uc002ysy.2_Missense_Mutation_p.P1124S|ITSN1_uc002ysx.2_Missense_Mutation_p.P1087S|ITSN1_uc002ytb.1_Missense_Mutation_p.P1124S|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.P1021S|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Missense_Mutation_p.P1124S|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.P992S|ITSN1_uc002yti.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1129	SH3 4.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						AGGCTGGTTCCCAGCTAATTA	0.418													7	43					0	0	0.000157383	0	0
SLC5A3	6526	broad.mit.edu	37	21	35468343	35468343	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:35468343C>G	uc002yto.2	+	2	1358	c.846C>G	c.(844-846)ATC>ATG	p.I282M	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	282	Cytoplasmic (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						ACCAAGTCATCGTGCAGAGGG	0.483													29	249					0	0	0.0024448	0	0
KCNJ6	3763	broad.mit.edu	37	21	39212969	39212969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:39212969C>T	uc011aej.1	-	2	69	c.16G>A	c.(16-18)GAA>AAA	p.E6K	KCNJ6_uc002ywo.2_Missense_Mutation_p.E6K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	6	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	CTCATGGATTCTGTCAGCTTG	0.343													58	419					0	0	0.000781405	0	0
BRWD1	54014	broad.mit.edu	37	21	40670378	40670378	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:40670378G>A	uc002yxk.1	-	5	468	c.329C>T	c.(328-330)TCT>TTT	p.S110F	BRWD1_uc002yxl.2_Missense_Mutation_p.S110F|BRWD1_uc002yxm.2_Missense_Mutation_p.S110F	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	110					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				ACGTAGCAAAGACTGCCTTCC	0.368													17	231					0	0	0.000958276	0	0
DSCAM	1826	broad.mit.edu	37	21	41385204	41385204	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:41385204C>T	uc002yyq.1	-	33	6248	c.5796G>A	c.(5794-5796)CAG>CAA	p.Q1932Q	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1932	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCCGGCTTTTCTGAGGTTCCA	0.587													12	54					0	0	0.000308642	0	0
BACE2	25825	broad.mit.edu	37	21	42615318	42615318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:42615318G>A	uc002yyw.2	+	5	1226	c.763G>A	c.(763-765)GAA>AAA	p.E255K	BACE2_uc002yyx.2_Missense_Mutation_p.E255K|BACE2_uc002yyy.2_Missense_Mutation_p.E255K|BACE2_uc010goo.2_5'Flank	NM_012105	NP_036237	Q9Y5Z0	BACE2_HUMAN	beta-site APP-cleaving enzyme 2 isoform A	255	Extracellular (Potential).				membrane protein ectodomain proteolysis|negative regulation of amyloid precursor protein biosynthetic process|peptide hormone processing	cell surface|endoplasmic reticulum|endosome|Golgi apparatus|integral to membrane	aspartic-type endopeptidase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0251)				GGGTGGAATTGAACCAAGTTT	0.388													14	79					0	0	0.00074312	0	0
MX2	4600	broad.mit.edu	37	21	42775241	42775241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:42775241G>A	uc002yzf.1	+	12	1725	c.1621G>A	c.(1621-1623)GAA>AAA	p.E541K	MX2_uc002yzg.1_Missense_Mutation_p.E264K|MX2_uc010gop.1_Missense_Mutation_p.E23K	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	541					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				ACATTTTGGCGAATTTTTCAA	0.383													6	53					0	0	0.000274275	0	0
MX1	4599	broad.mit.edu	37	21	42815719	42815719	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:42815719C>T	uc002yzh.2	+	13	1881	c.934C>T	c.(934-936)CTG>TTG	p.L312L	MX1_uc002yzi.2_Silent_p.L312L|MX1_uc010goq.2_Silent_p.L312L	NM_001144925	NP_001138397	P20591	MX1_HUMAN	myxovirus resistance protein 1	312					induction of apoptosis|response to virus|type I interferon-mediated signaling pathway	cytosol	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(19;3.18e-07)|all_epithelial(19;0.0277)				TTCTAGGGATCTGCTGGAGGA	0.507													12	171					0	0	0.000308642	0	0
UMODL1	89766	broad.mit.edu	37	21	43510525	43510525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:43510525G>A	uc002zaf.1	+	6	908	c.908G>A	c.(907-909)CGG>CAG	p.R303Q	UMODL1_uc002zad.1_Missense_Mutation_p.R231Q|UMODL1_uc002zae.1_Missense_Mutation_p.R231Q|UMODL1_uc002zag.1_Missense_Mutation_p.R303Q|UMODL1_uc010gow.1_Missense_Mutation_p.R95Q|UMODL1_uc002zai.1_5'UTR|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_5'UTR|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Intron	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	303	Extracellular (Potential).|EGF-like 1; calcium-binding (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						ACGTCTCCACGGAAGCTGAAC	0.463													7	45					0	0	0.000157383	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43796671	43796671	+	Silent	SNP	C	T	T	rs140620963		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:43796671C>T	uc002zbb.2	-	11	1374	c.1173G>A	c.(1171-1173)ACG>ACA	p.T391T	TMPRSS3_uc002zay.2_Silent_p.T148T|TMPRSS3_uc002zaz.2_Silent_p.T264T|TMPRSS3_uc002zba.2_Silent_p.T264T|TMPRSS3_uc002zbc.2_Silent_p.T390T	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	391	Peptidase S1.|Extracellular (Potential).			ICNHRDVYGGIISPSMLCAGYLTGGVD -> DLQPQGRVRW HHLPLHALRGLPDGWRWN (in Ref. 1; AAG37012).	cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						CCACGCCACCCGTCAGGTAGC	0.657											OREG0031642	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	7	46					0	0	0.00198382	0	0
CBS	875	broad.mit.edu	37	21	44492176	44492176	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:44492176C>T	uc002zcu.2	-	3	373	c.128G>A	c.(127-129)TGG>TAG	p.W43*	CBS_uc002zct.2_Nonsense_Mutation_p.W43*|CBS_uc002zcw.3_Nonsense_Mutation_p.W43*|CBS_uc002zcv.2_Nonsense_Mutation_p.W43*	NM_000071	NP_000062	P35520	CBS_HUMAN	cystathionine-beta-synthase	43					cysteine biosynthetic process from serine|cysteine biosynthetic process via cystathionine|homocysteine catabolic process|hydrogen sulfide biosynthetic process|L-cysteine catabolic process|L-serine catabolic process	cytosol|nucleolus	cystathionine beta-synthase activity|heme binding|protein homodimerization activity|pyridoxal phosphate binding|ubiquitin protein ligase binding				0					L-Cysteine(DB00151)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|S-Adenosylmethionine(DB00118)	GGGCCGGATCCACAGGGGCTC	0.677													11	187					0	0	0.00136819	0	0
SIK1	150094	broad.mit.edu	37	21	44838334	44838334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:44838334G>A	uc002zdf.2	-	12	1677	c.1550C>T	c.(1549-1551)CCC>CTC	p.P517L		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	517					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						GAGCCCCGCGGGGCTTTTGCT	0.687													7	9					0	0	0.00198382	0	0
PFKL	5211	broad.mit.edu	37	21	45739290	45739290	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:45739290C>T	uc002zel.2	+	11	1178	c.1119C>T	c.(1117-1119)CTC>CTT	p.L373L	PFKL_uc002zek.2_Silent_p.L420L|PFKL_uc002zem.2_5'UTR|PFKL_uc002zen.2_5'UTR	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	373					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		CCACCCAGCTCCGTGGTGGGT	0.592													5	70					0	0	0.000602214	0	0
TRPM2	7226	broad.mit.edu	37	21	45795835	45795835	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:45795835G>A	uc002zet.1	+	7	1104	c.891G>A	c.(889-891)GTG>GTA	p.V297V	TRPM2_uc002zeu.1_Silent_p.V297V|TRPM2_uc002zew.1_Silent_p.V297V|TRPM2_uc010gpt.1_Silent_p.V297V|TRPM2_uc002zex.1_Silent_p.V83V	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	297	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGTACGGGGTGGAGATTCCTC	0.572													5	50					0	0	0.000274275	0	0
TRPM2	7226	broad.mit.edu	37	21	45837845	45837845	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:45837845A>G	uc002zet.1	+	22	3395	c.3182A>G	c.(3181-3183)CAG>CGG	p.Q1061R	TRPM2_uc002zeu.1_Missense_Mutation_p.Q1061R|TRPM2_uc002zew.1_Missense_Mutation_p.Q1061R|TRPM2_uc010gpt.1_Missense_Mutation_p.Q1061R|TRPM2_uc002zex.1_Missense_Mutation_p.Q847R|TRPM2_uc002zey.1_Missense_Mutation_p.Q574R|uc011afe.1_Intron	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1061	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						CACACGGACCAGATTTGGAAG	0.493													6	44					0	0	0.000157383	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020592	46020592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:46020592C>T	uc002zfn.3	+	1	96	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	24						keratin filament					0						CTTCCTGGTTCCTGTGACTCT	0.662													4	27					0	0	0.000602214	0	0
COL6A1	1291	broad.mit.edu	37	21	47412101	47412101	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:47412101C>T	uc002zhu.1	+	17	1308	c.1206C>T	c.(1204-1206)CCC>CCT	p.P402P		NM_001848	NP_001839	P12109	CO6A1_HUMAN	collagen, type VI, alpha 1 precursor	402	Triple-helical region.				axon guidance|cell adhesion|protein heterotrimerization	collagen type VI|protein complex	platelet-derived growth factor binding			ovary(1)	1	all_hematologic(128;0.24)			Colorectal(79;0.0265)|READ - Rectum adenocarcinoma(84;0.0649)	Palifermin(DB00039)	AGCCTGGGCCCCCCGGAGAGA	0.647													10	42					0	0	0.00185496	0	0
COL6A2	1292	broad.mit.edu	37	21	47545947	47545947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr21:47545947G>A	uc002zia.1	+	26	2300	c.2218G>A	c.(2218-2220)GAT>AAT	p.D740N	COL6A2_uc002zhy.1_Missense_Mutation_p.D740N|COL6A2_uc002zhz.1_Missense_Mutation_p.D740N|COL6A2_uc002zib.1_Missense_Mutation_p.D146N|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	740	VWFA 2.|Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CCCTCGGGACGATGACCTCAA	0.617													7	40					0	0	0.00198382	0	0
CECR2	27443	broad.mit.edu	37	22	18016881	18016881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:18016881C>T	uc010gqw.1	+	9	1258	c.1132C>T	c.(1132-1134)CCC>TCC	p.P378S	CECR2_uc010gqv.1_Missense_Mutation_p.P237S|CECR2_uc002zml.2_Missense_Mutation_p.P237S|CECR2_uc002zmn.2_5'UTR	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	420					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		CCATCTGGACCCCAATTCCCC	0.463													5	77					0	0	0.000602214	0	0
KLHL22	84861	broad.mit.edu	37	22	20819207	20819207	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:20819207G>A	uc002zsl.1	-	4	1159	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	KLHL22_uc011ahr.1_Silent_p.F207F|KLHL22_uc002zsm.1_Silent_p.F350F	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	350	Kelch 2.				cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			TCAAGTATACGAAGTTGTTGA	0.552													12	87					0	0	0.00185496	0	0
CCDC116	164592	broad.mit.edu	37	22	21989370	21989370	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:21989370T>C	uc002zve.2	+	4	1111	c.1018T>C	c.(1018-1020)TTG>CTG	p.L340L	CCDC116_uc011aih.1_Silent_p.L340L	NM_152612	NP_689825	Q8IYX3	CC116_HUMAN	coiled-coil domain containing 116	340										ovary(1)|skin(1)	2	Colorectal(54;0.105)					CCCCACCAGCTTGGAGCCCAC	0.677													9	30					0	0	0.00136819	0	0
LOC96610	96610	broad.mit.edu	37	22	22453496	22453496	+	RNA	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:22453496C>A	uc011aim.1	+	7		c.629C>A								Parts of antibodies, mostly variable regions.												0						AACACTCGCTCTTCTGGGGTC	0.557													8	93					0.000442599	0.00176687	0.000442599	1	0
LOC96610	96610	broad.mit.edu	37	22	22730614	22730614	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:22730614G>A	uc011aim.1	+	44		c.4781G>A								Parts of antibodies, mostly variable regions.												0						TGGAGCATCAGCCAGTCTCAC	0.547													14	81					0	0	0.00121646	0	0
LOC96610	96610	broad.mit.edu	37	22	23077529	23077529	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:23077529G>A	uc011aim.1	+	187		c.10220G>A								Parts of antibodies, mostly variable regions.												0						TCCAGGCTGAGGACGAGGCTG	0.552													7	68					0	0	0.000157383	0	0
SGSM1	129049	broad.mit.edu	37	22	25294504	25294505	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:25294504_25294505CT>TA	uc003abg.2	+	20	2910_2911	c.2753_2754CT>TA	c.(2752-2754)TCT>TTA	p.S918L	SGSM1_uc003abh.2_Missense_Mutation_p.S857L|SGSM1_uc010guu.1_Missense_Mutation_p.S863L|SGSM1_uc003abj.2_Missense_Mutation_p.S802L|SGSM1_uc003abi.1_Missense_Mutation_p.S838L	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	918	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TCCCCTGTGTCTTCCAGCGGCG	0.554													11	88					0	0	6.4e-05	0	0
SGSM1	129049	broad.mit.edu	37	22	25315900	25315900	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:25315900T>A	uc003abg.2	+	25	3455	c.3298T>A	c.(3298-3300)TAC>AAC	p.Y1100N	SGSM1_uc003abh.2_Missense_Mutation_p.Y1039N|SGSM1_uc010guu.1_Missense_Mutation_p.Y1045N|SGSM1_uc003abj.2_Missense_Mutation_p.Y984N|SGSM1_uc003abi.1_Missense_Mutation_p.Y1020N	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	1100						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						GGTGGAAGTCTACCGTGACAT	0.507													6	14					0	0	0.00198382	0	0
CRYBB3	1417	broad.mit.edu	37	22	25597420	25597420	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:25597420C>T	uc003abo.1	+	2	129	c.57C>T	c.(55-57)GAC>GAT	p.D19D		NM_004076	NP_004067	P26998	CRBB3_HUMAN	crystallin, beta B3	19	N-terminal arm.				visual perception		protein binding|structural constituent of eye lens				0						GCCATGGAGACCTTGGGGGCA	0.607													10	62					0	0	0.000978159	0	0
ADRBK2	157	broad.mit.edu	37	22	26091075	26091075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:26091075G>A	uc003abx.3	+	13	1201	c.1054G>A	c.(1054-1056)GGC>AGC	p.G352S	ADRBK2_uc010gux.2_Missense_Mutation_p.G352S|ADRBK2_uc003abw.2_Missense_Mutation_p.G239S|ADRBK2_uc003aby.3_RNA	NM_005160	NP_005151	P35626	ARBK2_HUMAN	beta-adrenergic receptor kinase 2	352	Protein kinase.						ATP binding|beta-adrenergic receptor kinase activity|signal transducer activity			lung(3)|ovary(2)|stomach(1)|central_nervous_system(1)	7					Adenosine triphosphate(DB00171)	TCTCCCTAGTGGCACCCATGG	0.537													6	76					0	0	0.00198382	0	0
MYO18B	84700	broad.mit.edu	37	22	26239782	26239782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:26239782G>A	uc003abz.1	+	18	3539	c.3289G>A	c.(3289-3291)GAC>AAC	p.D1097N	MYO18B_uc003aca.1_Missense_Mutation_p.D978N|MYO18B_uc010guy.1_Missense_Mutation_p.D979N|MYO18B_uc010guz.1_Missense_Mutation_p.D978N|MYO18B_uc011aka.1_Missense_Mutation_p.D251N|MYO18B_uc011akb.1_Missense_Mutation_p.D610N	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1097	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGTGCGGTACGACCTCACGGG	0.622													11	34					0	0	0.000978159	0	0
MYO18B	84700	broad.mit.edu	37	22	26298654	26298654	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:26298654A>C	uc003abz.1	+	30	5148	c.4898A>C	c.(4897-4899)GAG>GCG	p.E1633A	MYO18B_uc003aca.1_Missense_Mutation_p.E1514A|MYO18B_uc010guy.1_Missense_Mutation_p.E1515A|MYO18B_uc010guz.1_Missense_Mutation_p.E1513A|MYO18B_uc011aka.1_Missense_Mutation_p.E787A|MYO18B_uc011akb.1_Missense_Mutation_p.E1146A	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1633	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GTGACCCAGGAGAACACCAGT	0.572													3	14					0	0	6.4e-05	0	0
MYO18B	84700	broad.mit.edu	37	22	26422449	26422449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:26422449C>T	uc003abz.1	+	43	6759	c.6509C>T	c.(6508-6510)TCG>TTG	p.S2170L	MYO18B_uc003aca.1_Missense_Mutation_p.S2051L|MYO18B_uc010guy.1_Missense_Mutation_p.S2052L|MYO18B_uc010guz.1_Missense_Mutation_p.S2050L|MYO18B_uc011aka.1_Missense_Mutation_p.S1324L|MYO18B_uc011akb.1_Missense_Mutation_p.S1683L|MYO18B_uc010gva.1_Missense_Mutation_p.S153L|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2170						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGGACCCAGTCGGCATTGGCA	0.507													29	156					0	0	0.00178596	0	0
SEZ6L	23544	broad.mit.edu	37	22	26706646	26706646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:26706646C>T	uc003acb.2	+	7	1681	c.1525C>T	c.(1525-1527)CAC>TAC	p.H509Y	SEZ6L_uc003acc.2_Missense_Mutation_p.H509Y|SEZ6L_uc011akc.1_Missense_Mutation_p.H509Y|SEZ6L_uc003acd.2_Missense_Mutation_p.H509Y|SEZ6L_uc011akd.1_Missense_Mutation_p.H509Y|SEZ6L_uc003ace.2_Missense_Mutation_p.H509Y|SEZ6L_uc003acf.1_Missense_Mutation_p.H282Y|SEZ6L_uc010gvc.1_Missense_Mutation_p.H282Y	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	509	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GATGACGGTTCACAGCGGGCA	0.537													7	54					0	0	0.000442599	0	0
TPST2	8459	broad.mit.edu	37	22	26937078	26937078	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:26937078G>A	uc003acv.2	-	2	687	c.519C>T	c.(517-519)TTC>TTT	p.F173F	TPST2_uc003acw.2_Silent_p.F173F|TPST2_uc003acx.2_Silent_p.F173F|TPST2_uc011akf.1_Silent_p.F173F	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	173	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						TGGAGTTGGGGAACAGGCGCG	0.612													7	37					0	0	0.000442599	0	0
ZNRF3	84133	broad.mit.edu	37	22	29444428	29444428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:29444428C>T	uc003aeg.2	+	7	829	c.664C>T	c.(664-666)CCC>TCC	p.P222S	ZNRF3_uc003aeh.1_Missense_Mutation_p.P222S	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	322	RING-type; atypical.|Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GTGCGTGGACCCCTGGCTGCT	0.597													6	48					0	0	0.000274275	0	0
EMID1	129080	broad.mit.edu	37	22	29628258	29628258	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:29628258C>T	uc003aen.2	+	8	759	c.684C>T	c.(682-684)CCC>CCT	p.P228P	EMID1_uc003aem.2_Silent_p.P230P|EMID1_uc003aeo.2_Silent_p.P230P|EMID1_uc003aep.2_Silent_p.P230P	NM_133455	NP_597712	Q96A84	EMID1_HUMAN	EMI domain containing 1	228	Collagen-like.					collagen					0						CACAGGGCCCCCCAGGGAGCC	0.697													12	54					0	0	0.000566183	0	0
AP1B1	162	broad.mit.edu	37	22	29727502	29727502	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:29727502G>A	uc003afj.2	-	19	2644	c.2460C>T	c.(2458-2460)ATC>ATT	p.I820I	AP1B1_uc003afi.2_Silent_p.I813I|AP1B1_uc003afk.2_Silent_p.I813I|AP1B1_uc003afl.2_Silent_p.I793I|AP1B1_uc003afh.2_Silent_p.I17I|AP1B1_uc011ako.1_Silent_p.I373I	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	820					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						AGAAGACATCGATGTTGTTCT	0.577													7	109					0	0	0.000442599	0	0
OSM	5008	broad.mit.edu	37	22	30661125	30661125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:30661125G>A	uc003ahb.2	-	2	95	c.43C>T	c.(43-45)CTT>TTT	p.L15F		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	15					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			AGGAGTGCAAGGACCAGACCT	0.582													12	89					0	0	0.00185496	0	0
CCDC157	550631	broad.mit.edu	37	22	30766800	30766800	+	Silent	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:30766800G>C	uc011aku.1	+	5	1566	c.906G>C	c.(904-906)GGG>GGC	p.G302G	CCDC157_uc011akv.1_Silent_p.G302G	NM_001017437	NP_001017437	Q569K6	CC157_HUMAN	coiled-coil domain containing 157	302	Potential.									central_nervous_system(1)	1						AGGCTGAAGGGCAGAAGGATG	0.677													9	24					0	0	0.000673444	0	0
SEC14L4	284904	broad.mit.edu	37	22	30887678	30887678	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:30887678C>T	uc003aid.2	-	11	1063	c.963G>A	c.(961-963)AAG>AAA	p.K321K	SEC14L4_uc011akz.1_Silent_p.K321K|SEC14L4_uc003aie.2_Silent_p.K306K|SEC14L4_uc003aif.2_Silent_p.K267K	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	321	GOLD.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	CCATCTTGGTCTTCAGGAAAA	0.617													12	48					0	0	0.00244969	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951447	30951447	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:30951447G>A	uc003aig.1	-	4	905	c.765C>T	c.(763-765)TTC>TTT	p.F255F	GAL3ST1_uc003aih.1_Silent_p.F255F|GAL3ST1_uc003aii.1_Silent_p.F255F|GAL3ST1_uc010gvz.1_Silent_p.F255F	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	255	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						GCGACTCGTCGAAGTACTCTT	0.647													20	82					0	0	0.00047179	0	0
LIMK2	3985	broad.mit.edu	37	22	31658612	31658612	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:31658612C>G	uc003akh.2	+	7	834	c.689C>G	c.(688-690)ACA>AGA	p.T230R	LIMK2_uc003akg.2_Missense_Mutation_p.T147R|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.T209R|LIMK2_uc003akk.2_Missense_Mutation_p.T209R|LIMK2_uc011aln.1_Missense_Mutation_p.T147R	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	230	PDZ.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						ACGAGCCAGACACTTCAGCTG	0.612													5	82					0	0	0.00198382	0	0
LIMK2	3985	broad.mit.edu	37	22	31669481	31669481	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:31669481C>T	uc003akh.2	+	14	1747	c.1602C>T	c.(1600-1602)ATC>ATT	p.I534I	LIMK2_uc003akg.2_Silent_p.I451I|LIMK2_uc003aki.2_Silent_p.I288I|LIMK2_uc003akj.2_Silent_p.I513I|LIMK2_uc003akk.2_Silent_p.I513I|LIMK2_uc011aln.1_Silent_p.I451I	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	534	Protein kinase.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						CCTTTGGGATCGTTCTCTGTG	0.552											OREG0026477	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	50					0	0	0.000157383	0	0
C22orf28	51493	broad.mit.edu	37	22	32791048	32791048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:32791048G>A	uc003amm.2	-	9	1275	c.1144C>T	c.(1144-1146)CCT>TCT	p.P382S		NM_014306	NP_055121	Q9Y3I0	RTCB_HUMAN	hypothetical protein LOC51493	382					cell-matrix adhesion|substrate adhesion-dependent cell spreading|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|tRNA-splicing ligase complex	ATP binding|metal ion binding|RNA ligase (ATP) activity|vinculin binding				0						TGGTGAGGAGGGAAAGCGCGG	0.478													7	61					0	0	0.000274275	0	0
ISX	91464	broad.mit.edu	37	22	35463173	35463173	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:35463173C>T	uc003anj.2	+	1	1044	c.93C>T	c.(91-93)TTC>TTT	p.F31F	ISX_uc011amg.1_Silent_p.F19F	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	31						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GCCTGTCCTTCTCCATTGAGG	0.607													4	9					0	0	0.00024832	0	0
APOL5	80831	broad.mit.edu	37	22	36116687	36116687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:36116687C>T	uc003aof.2	+	2	128	c.128C>T	c.(127-129)CCA>CTA	p.P43L		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	43					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						GGGAAGTCCccagaacctgag	0.249													11	19					0	0	0.000978159	0	0
CSF2RB	1439	broad.mit.edu	37	22	37326418	37326418	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:37326418G>A	uc003aqa.3	+	7	937	c.720G>A	c.(718-720)GGG>GGA	p.G240G	CSF2RB_uc003aqc.3_Silent_p.G240G	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	240	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	CCAACCCAGGGGATGAGGCCC	0.537													8	113					0	0	0.000274275	0	0
ANKRD54	129138	broad.mit.edu	37	22	38229733	38229733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:38229733G>A	uc003auc.2	-	4	563	c.505C>T	c.(505-507)CCT>TCT	p.P169S	ANKRD54_uc003aud.2_Missense_Mutation_p.P46S	NM_138797	NP_620152	Q6NXT1	ANR54_HUMAN	ankyrin repeat domain 54	169	ANK 2.										0	Melanoma(58;0.045)					CGCTGGTTAGGATCAGCACCA	0.537													7	53					0	0	0.000157383	0	0
PLA2G6	8398	broad.mit.edu	37	22	38565419	38565419	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:38565419G>A	uc003auy.1	-	2	151	c.15C>T	c.(13-15)GGC>GGT	p.G5G	PLA2G6_uc003auz.1_Silent_p.G5G|PLA2G6_uc003ava.1_Silent_p.G5G|PLA2G6_uc003avb.2_Silent_p.G5G|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Silent_p.G5G	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	5					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	TGACCAGGCGGCCAAAGAACT	0.592													4	18					0	0	0.000602214	0	0
CACNA1I	8911	broad.mit.edu	37	22	40030577	40030577	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:40030577G>A	uc003ayc.2	+	5	588	c.588G>A	c.(586-588)CGG>CGA	p.R196R	CACNA1I_uc003ayd.2_Silent_p.R196R|CACNA1I_uc003aye.2_Silent_p.R111R|CACNA1I_uc003ayf.2_Silent_p.R111R	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	196	I.|Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	CAGGTATGCGGATCCTGGTGA	0.557													36	130					0	0	0.00195071	0	0
FAM83F	113828	broad.mit.edu	37	22	40415271	40415271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:40415271G>A	uc003ayk.1	+	2	683	c.589G>A	c.(589-591)GAC>AAC	p.D197N		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	197										breast(1)	1						CATCATCCTGGACGAGGCAGG	0.527													15	59					0	0	0.000566183	0	0
FAM83F	113828	broad.mit.edu	37	22	40415903	40415903	+	Missense_Mutation	SNP	C	T	T	rs141068393		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:40415903C>T	uc003ayk.1	+	3	764	c.670C>T	c.(670-672)CGC>TGC	p.R224C		NM_138435	NP_612444	Q8NEG4	FA83F_HUMAN	hypothetical protein LOC113828	224										breast(1)	1						CATCCGTGTCCGCTCTGTGAC	0.602													10	50					0	0	0.000442599	0	0
EP300	2033	broad.mit.edu	37	22	41527608	41527608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:41527608C>T	uc003azl.3	+	6	1894	c.1499C>T	c.(1498-1500)CCC>CTC	p.P500L		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	500					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GGGCAGTCTCCCCAAGGCATG	0.473			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				12	66					0	0	0.00136819	0	0
CYP2D6	1565	broad.mit.edu	37	22	42523475	42523475	+	Missense_Mutation	SNP	C	T	T	rs75386357	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:42523475C>T	uc003bce.2	-	7	1237	c.1147G>A	c.(1147-1149)GAA>AAA	p.E383K	uc003bcd.1_Intron|CYP2D6_uc010gyu.2_Missense_Mutation_p.E77K|CYP2D6_uc003bcf.2_Missense_Mutation_p.E332K	NM_000106	NP_000097	Q6NWU0	Q6NWU0_HUMAN	cytochrome P450, family 2, subfamily D,	383							electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen			breast(1)|skin(1)	2						CCCTGTACTTCGATGTCACGG	0.617													5	19					0	0	0.00198382	0	0
MPPED1	758	broad.mit.edu	37	22	43898546	43898546	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:43898546G>A	uc011apv.1	+	6	994	c.771G>A	c.(769-771)AAG>AAA	p.K257K	MPPED1_uc011apw.1_Silent_p.K151K|MPPED1_uc011apx.1_Silent_p.K99K|MPPED1_uc011apy.1_Silent_p.K257K|MPPED1_uc011apz.1_Silent_p.K290K	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	257							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				GGGTCCCCAAGAAGATGCAGC	0.632													14	74					0	0	0.00074312	0	0
EFCAB6	64800	broad.mit.edu	37	22	44067858	44067858	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:44067858G>A	uc003bdy.1	-	15	1850	c.1635C>T	c.(1633-1635)TTC>TTT	p.F545F	EFCAB6_uc003bdz.1_Silent_p.F393F|EFCAB6_uc010gzi.1_Silent_p.F393F|EFCAB6_uc010gzk.1_RNA	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	545					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTTACTTTATGAAATGTGCAT	0.343													12	94					0	0	0.000308642	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083353	44083353	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:44083353A>T	uc003bdy.1	-	11	1355	c.1140T>A	c.(1138-1140)AAT>AAA	p.N380K	EFCAB6_uc003bdz.1_Missense_Mutation_p.N228K|EFCAB6_uc010gzi.1_Missense_Mutation_p.N228K|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Missense_Mutation_p.N377K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	380					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTACATACCTATTTCTTTTTG	0.299													14	66					0	0	0.00074312	0	0
LDOC1L	84247	broad.mit.edu	37	22	44893125	44893126	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:44893125_44893126GG>AA	uc003beu.1	-	2	648_649	c.311_312CC>TT	c.(310-312)CCC>CTT	p.P104L		NM_032287	NP_115663	Q6ICC9	LDOCL_HUMAN	leucine zipper, down-regulated in cancer 1-like	104										ovary(1)	1		Ovarian(80;0.024)|all_neural(38;0.0416)		LUAD - Lung adenocarcinoma(64;0.0161)		CCCCGGAAAAGGGCTCGGGCAG	0.639													12	20					0	0	6.4e-05	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45258246	45258246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:45258246C>T	uc003bfd.2	+	17	1975	c.1703C>T	c.(1702-1704)TCC>TTC	p.S568F	PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.S489F|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.S480F|PRR5-ARHGAP8_uc011aqj.1_Missense_Mutation_p.S411F|ARHGAP8_uc010gzv.2_3'UTR|ARHGAP8_uc003bfj.2_Missense_Mutation_p.S389F|ARHGAP8_uc003bfk.2_Missense_Mutation_p.S358F|ARHGAP8_uc003bfl.2_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						CAGGGGGTCTCCTCCCTGAGT	0.557													7	52					0	0	0.000157383	0	0
FBLN1	2192	broad.mit.edu	37	22	45937144	45937144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:45937144C>T	uc003bgj.1	+	9	1105	c.958C>T	c.(958-960)CCT>TCT	p.P320S	FBLN1_uc003bgg.1_Missense_Mutation_p.P320S|FBLN1_uc003bgh.2_Missense_Mutation_p.P320S|FBLN1_uc010gzz.2_Missense_Mutation_p.P358S|FBLN1_uc003bgi.1_Missense_Mutation_p.P320S	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	320	EGF-like 4; calcium-binding (Potential).				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TGCCCCGTGCCCTATCGGGCA	0.537													8	66					0	0	0.000673444	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657116	46657117	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:46657116_46657117CC>TT	uc003bhh.2	-	1	2103_2104	c.2103_2104GG>AA	c.(2101-2106)AAGGAT>AAAAAT	p.D702N		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	702	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		GGTAAAAAATCCTTCTTTTGAA	0.386													6	78					0	0	6.4e-05	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657627	46657627	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:46657627C>T	uc003bhh.2	-	1	1593	c.1593G>A	c.(1591-1593)TTG>TTA	p.L531L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	531	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		ACTCAGCTTCCAAAAAATGCC	0.428													29	165					0	0	0.00127121	0	0
MOV10L1	54456	broad.mit.edu	37	22	50530480	50530480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:50530480G>A	uc003bjj.2	+	2	231	c.148G>A	c.(148-150)GAT>AAT	p.D50N	MOV10L1_uc003bjk.3_Missense_Mutation_p.D50N|MOV10L1_uc011arp.1_Missense_Mutation_p.D30N|MOV10L1_uc010han.2_Missense_Mutation_p.D30N	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	50					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		GTACTGCAGCGATTATGGCAT	0.448													12	91					0	0	0.00185496	0	0
SBF1	6305	broad.mit.edu	37	22	50899591	50899591	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:50899591G>A	uc003blh.2	-	23	3159	c.2964C>T	c.(2962-2964)TTC>TTT	p.F988F	SBF1_uc011arx.1_Silent_p.F652F|SBF1_uc003bli.2_Silent_p.F989F	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	988					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GCCCCACCTGGAATGTGCAGG	0.637													5	12					0	0	0.000602214	0	0
SBF1	6305	broad.mit.edu	37	22	50900413	50900413	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:50900413G>A	uc003blh.2	-	20	2727	c.2532C>T	c.(2530-2532)ACC>ACT	p.T844T	SBF1_uc011arx.1_Silent_p.T508T|SBF1_uc003bli.2_Silent_p.T845T	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	844					protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GGTGGTCGCTGGTGACCCCAC	0.612													13	61					0	0	0.000566183	0	0
CNTN6	27255	broad.mit.edu	37	3	1262377	1262377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:1262377G>A	uc003boz.2	+	3	329	c.62G>A	c.(61-63)GGT>GAT	p.G21D	CNTN6_uc010hbo.2_Missense_Mutation_p.G16D|CNTN6_uc011asj.1_5'UTR|CNTN6_uc003bpa.2_Missense_Mutation_p.G21D	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	21					axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		CCAGGTGATGGTCTTTTAAGC	0.328													8	87					0	0	0.000274275	0	0
CNTN6	27255	broad.mit.edu	37	3	1262427	1262427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:1262427C>T	uc003boz.2	+	3	379	c.112C>T	c.(112-114)CCT>TCT	p.P38S	CNTN6_uc010hbo.2_Missense_Mutation_p.P33S|CNTN6_uc011asj.1_5'UTR|CNTN6_uc003bpa.2_Missense_Mutation_p.P38S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	38	Ig-like C2-type 1.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TGTCATTTTTCCTTTGGATTT	0.398													10	87					0	0	0.000978159	0	0
ATG7	10533	broad.mit.edu	37	3	11406164	11406164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:11406164C>T	uc003bwc.2	+	16	1948	c.1831C>T	c.(1831-1833)CGG>TGG	p.R611W	ATG7_uc003bwd.2_Missense_Mutation_p.R611W|ATG7_uc011aum.1_Missense_Mutation_p.R572W	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	611					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						CAGTGACGATCGGATGAATGA	0.488													15	115					0	0	0.000958276	0	0
PPARG	5468	broad.mit.edu	37	3	12458442	12458442	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:12458442C>T	uc003bwx.2	+	6	1150	c.1059C>T	c.(1057-1059)ATC>ATT	p.I353I	PPARG_uc003bwr.2_Silent_p.I325I|PPARG_uc003bws.2_Silent_p.I325I|PPARG_uc003bwu.2_Silent_p.I325I|PPARG_uc003bwv.2_Intron|PPARG_uc010hea.1_RNA	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	353	Ligand-binding.				activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	TCCACGAGATCATTTACACAA	0.453			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						39	348					0	0	0.00170553	0	0
PPARG	5468	broad.mit.edu	37	3	12458493	12458494	+	Nonsense_Mutation	DNP	CG	AT	AT	rs142289300	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:12458493_12458494CG>AT	uc003bwx.2	+	6	1201_1202	c.1110_1111CG>AT	c.(1108-1113)TCCGAG>TCATAG	p.E371*	PPARG_uc003bwr.2_Nonsense_Mutation_p.E343*|PPARG_uc003bws.2_Nonsense_Mutation_p.E343*|PPARG_uc003bwu.2_Nonsense_Mutation_p.E343*|PPARG_uc003bwv.2_Intron|PPARG_uc010hea.1_RNA	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	371	Ligand-binding.				activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	TTCTCATATCCGAGGGCCAAGG	0.45			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						14	376					0	0	6.4e-05	0	0
SLC6A6	6533	broad.mit.edu	37	3	14487283	14487283	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:14487283C>T	uc010heg.2	+	11	579	c.288C>T	c.(286-288)TTC>TTT	p.F96F	SLC6A6_uc003byp.2_Silent_p.F96F|SLC6A6_uc010hef.1_RNA|SLC6A6_uc003byq.2_Silent_p.F96F|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	96	Helical; Name=2; (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						CTGTGTTTTTCTTGGAGATCA	0.517													9	76					0	0	0.00136819	0	0
COLQ	8292	broad.mit.edu	37	3	15512102	15512102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:15512102C>T	uc003bzx.2	-	11	784	c.658G>A	c.(658-660)GAA>AAA	p.E220K	COLQ_uc003bzv.2_Missense_Mutation_p.E210K|COLQ_uc003bzz.2_Missense_Mutation_p.E211K|COLQ_uc010heo.2_Missense_Mutation_p.E186K|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Missense_Mutation_p.E79K|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	220	Collagen-like 1.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						ATCCCAGGTTCACCTTTTGGA	0.537													9	98					0	0	0.000978159	0	0
NR1D2	9975	broad.mit.edu	37	3	23996151	23996151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:23996151C>T	uc003ccs.2	+	2	459	c.140C>T	c.(139-141)TCT>TTT	p.S47F	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_5'UTR	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	47					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						CCAAATAGCTCTAATTCTGAT	0.428													10	95					0	0	0.000673444	0	0
NR1D2	9975	broad.mit.edu	37	3	24018800	24018800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:24018800C>T	uc003ccs.2	+	8	1949	c.1630C>T	c.(1630-1632)CAT>TAT	p.H544Y	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Missense_Mutation_p.H469Y	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	544					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						AATGAAAAACCATCCAAATGA	0.403													5	75					0	0	0.000602214	0	0
EOMES	8320	broad.mit.edu	37	3	27758656	27758656	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:27758656G>A	uc003cdx.2	-	6	1966	c.1966C>T	c.(1966-1968)CCC>TCC	p.P656S	EOMES_uc003cdy.3_Missense_Mutation_p.P675S|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Missense_Mutation_p.P380S	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	656	Required for transcription activation (By similarity).				CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						TTTATGGAGGGTGAATTTTCA	0.423													17	136					0	0	0.00121646	0	0
TMPPE	643853	broad.mit.edu	37	3	33134462	33134462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:33134462G>A	uc003cfk.2	-	2	1417	c.1226C>T	c.(1225-1227)CCC>CTC	p.P409L	GLB1_uc003cfh.1_Intron|GLB1_uc003cfi.1_Intron|GLB1_uc003cfj.1_Intron|GLB1_uc011axk.1_Intron|TMPPE_uc011axl.1_Missense_Mutation_p.P272L	NM_001039770	NP_001034859	Q6ZT21	TMPPE_HUMAN	transmembrane protein with	409						integral to membrane	metal ion binding				0						AGCAAAGAAGGGATTCAGGAG	0.562													5	45					0	0	0.000602214	0	0
DCLK3	85443	broad.mit.edu	37	3	36779527	36779527	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:36779527C>T	uc003cgi.2	-	2	1115	c.624G>A	c.(622-624)AGG>AGA	p.R208R		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	208						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						GAGTGGGATTCCTGGGGCTGC	0.587													5	54					0	0	0.00198382	0	0
PLCD1	5333	broad.mit.edu	37	3	38061696	38061696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38061696G>A	uc003chn.2	-	2	306	c.182C>T	c.(181-183)ACC>ATC	p.T61I	PLCD1_uc003chm.2_Missense_Mutation_p.T82I	NM_006225	NP_006216	P51178	PLCD1_HUMAN	phospholipase C, delta 1 isoform 2	61	PH.				intracellular signal transduction|lipid catabolic process|phospholipid metabolic process	cytoplasm	calcium ion binding|GTPase activating protein binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0519)|Kidney(284;0.0653)		GGACTCCGGGGTCCGCATGAC	0.577													9	53					0	0	0.00136819	0	0
DLEC1	9940	broad.mit.edu	37	3	38141900	38141900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38141900G>A	uc003cho.1	+	19	2869	c.2848G>A	c.(2848-2850)GAA>AAA	p.E950K	DLEC1_uc003chp.1_Missense_Mutation_p.E950K|DLEC1_uc010hgv.1_Missense_Mutation_p.E950K|DLEC1_uc003chr.1_Missense_Mutation_p.E56K|DLEC1_uc010hgx.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	950					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		GCTGGAGGTGGAAAATGGTGC	0.502													8	61					0	0	0.000673444	0	0
SCN10A	6336	broad.mit.edu	37	3	38760156	38760156	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38760156G>A	uc003ciq.2	-	20	3669	c.3669C>T	c.(3667-3669)TTC>TTT	p.F1223F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1223	III.|Helical; Name=S3 of repeat III; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TCACAATGAGGAAGTCCAGCC	0.527													5	53					0	0	0.00198382	0	0
SCN11A	11280	broad.mit.edu	37	3	38888300	38888300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38888300C>T	uc011ays.1	-	26	5460	c.5261G>A	c.(5260-5262)GGT>GAT	p.G1754D		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1754					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	accttggtcacccttggtcac	0.398													8	63					0	0	0.000274275	0	0
SCN11A	11280	broad.mit.edu	37	3	38936098	38936098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38936098C>T	uc011ays.1	-	15	2960	c.2761G>A	c.(2761-2763)GAG>AAG	p.E921K	SCN11A_uc010hhn.1_Missense_Mutation_p.E37K	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	921					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TCTTCCTCCTCCGCAAGTGGT	0.493													14	102					0	0	0.00185496	0	0
SCN11A	11280	broad.mit.edu	37	3	38936173	38936173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38936173C>T	uc011ays.1	-	15	2885	c.2686G>A	c.(2686-2688)GAG>AAG	p.E896K	SCN11A_uc010hhn.1_Missense_Mutation_p.E12K	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	896					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ATACCAAGCTCCTCCTGGGTC	0.517													5	53					0	0	0.000602214	0	0
SCN11A	11280	broad.mit.edu	37	3	38936224	38936224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38936224C>T	uc011ays.1	-	15	2834	c.2635G>A	c.(2635-2637)GAC>AAC	p.D879N	SCN11A_uc010hhn.1_5'UTR	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	879					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GGAATGATGTCTTTGCTTTGT	0.507													7	69					0	0	0.000157383	0	0
SCN11A	11280	broad.mit.edu	37	3	38961476	38961476	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38961476C>T	uc011ays.1	-	7	1108	c.909G>A	c.(907-909)AAG>AAA	p.K303K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	303	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AATTTTCTTTCTTTTCAAAGC	0.338													5	74					0	0	0.000602214	0	0
SCN11A	11280	broad.mit.edu	37	3	38968369	38968369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:38968369C>T	uc011ays.1	-	4	741	c.542G>A	c.(541-543)AGA>AAA	p.R181K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	181	I.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AATGAAACCTCTTGCCAATAT	0.338													17	107					0	0	0.000566183	0	0
XIRP1	165904	broad.mit.edu	37	3	39228494	39228494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:39228494G>A	uc003cjk.1	-	2	2664	c.2443C>T	c.(2443-2445)CCT>TCT	p.P815S	XIRP1_uc003cji.2_Missense_Mutation_p.P815S|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	815							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CGTATATAAGGGTGCCCCTGC	0.617													5	55					0	0	0.00116845	0	0
SNRK	54861	broad.mit.edu	37	3	43381843	43381843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:43381843C>T	uc003cms.3	+	5	1128	c.796C>T	c.(796-798)CAT>TAT	p.H266Y	SNRK_uc003cmt.3_Missense_Mutation_p.H266Y|SNRK_uc010hik.2_Missense_Mutation_p.H266Y|SNRK_uc011azr.1_Missense_Mutation_p.H60Y	NM_017719	NP_060189	Q9NRH2	SNRK_HUMAN	SNF related kinase	266	Protein kinase.				myeloid cell differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)|skin(1)	6				KIRC - Kidney renal clear cell carcinoma(284;0.0636)|Kidney(284;0.0792)		GATTGAAAATCATCCTTGGCT	0.438													13	125					0	0	0.00185496	0	0
LTF	4057	broad.mit.edu	37	3	46487985	46487985	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:46487985C>T	uc003cpq.2	-	11	1342	c.1304_splice	c.e11-1	p.K435_splice	LTF_uc003fzr.2_Splice_Site_p.K391_splice|LTF_uc010hjh.2_Splice_Site_p.K433_splice|LTF_uc003cpr.2_Splice_Site_p.K422_splice	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor						cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TGTTGGGATTCTGAAAGAATA	0.413													7	86					0	0	0.000274275	0	0
LRRC2	79442	broad.mit.edu	37	3	46569019	46569019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:46569019G>A	uc010hji.2	-	7	1190	c.826C>T	c.(826-828)CCC>TCC	p.P276S	LRRC2_uc003cpu.3_Missense_Mutation_p.P276S	NM_024512	NP_078788	Q9BYS8	LRRC2_HUMAN	leucine rich repeat containing 2	276	LRR 7.									ovary(1)	1		Ovarian(412;0.0563)		OV - Ovarian serous cystadenocarcinoma(275;6.37e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00133)|KIRC - Kidney renal clear cell carcinoma(197;0.0214)|Kidney(197;0.0254)		ATGGAATAGGGAAGGTAGGTC	0.458													6	25					0	0	0.00198382	0	0
NBEAL2	23218	broad.mit.edu	37	3	47044715	47044715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:47044715C>T	uc003cqp.2	+	35	5815	c.5636C>T	c.(5635-5637)ACC>ATC	p.T1879I	NBEAL2_uc010hjm.1_Missense_Mutation_p.T1256I|NBEAL2_uc010hjn.1_Missense_Mutation_p.T275I|NBEAL2_uc010hjo.1_5'Flank	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1879							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		CTGGCAGTGACCAAAGAGGCC	0.652													5	19					0	0	0.000602214	0	0
SMARCC1	6599	broad.mit.edu	37	3	47755909	47755909	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:47755909C>T	uc003crq.2	-	8	906	c.788G>A	c.(787-789)TGG>TAG	p.W263*	SMARCC1_uc011bbd.1_Nonsense_Mutation_p.W154*	NM_003074	NP_003065	Q92922	SMRC1_HUMAN	SWI/SNF-related matrix-associated	263					chromatin remodeling|nervous system development|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex|WINAC complex	DNA binding|protein N-terminus binding|transcription coactivator activity			skin(2)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(193;7.47e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)		ATTTACCTTCCATGGTTTTTC	0.209													15	156					0	0	0.000422831	0	0
IMPDH2	3615	broad.mit.edu	37	3	49065192	49065192	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:49065192C>T	uc003cvt.2	-	5	574	c.482G>A	c.(481-483)AGG>AAG	p.R161K		NM_000884	NP_000875	P12268	IMDH2_HUMAN	inosine monophosphate dehydrogenase 2	161	CBS 1.				GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	IMP dehydrogenase activity|metal ion binding|nucleotide binding|protein binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)	ATCAATGTCCCTGGAGGAGAT	0.547													4	56					0	0	0.00198382	0	0
BSN	8927	broad.mit.edu	37	3	49680225	49680225	+	Silent	SNP	C	T	T	rs71324983	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:49680225C>T	uc003cxe.3	+	3	1272	c.1158C>T	c.(1156-1158)ATC>ATT	p.I386I		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	386					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CACCTAAGATCGTCTTCAATG	0.642													6	38					0	0	0.00198382	0	0
RNF123	63891	broad.mit.edu	37	3	49736246	49736246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:49736246C>T	uc003cxh.2	+	9	715	c.629C>T	c.(628-630)TCC>TTC	p.S210F	RNF123_uc010hky.1_5'Flank|RNF123_uc003cxi.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	210	B30.2/SPRY.					cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GGCACTCTGTCCTTCTGCCTG	0.627													5	22					0	0	0.00116845	0	0
DNAH1	25981	broad.mit.edu	37	3	52398871	52398871	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:52398871T>A	uc011bef.1	+	34	5615	c.5354T>A	c.(5353-5355)ATC>AAC	p.I1785N		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1785					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTCCGGGCCATCCGTGATGTG	0.637													7	22					0	0	0.00198382	0	0
ITIH1	3697	broad.mit.edu	37	3	52816987	52816987	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:52816987C>T	uc003dfs.2	+	9	969	c.945C>T	c.(943-945)CTC>CTT	p.L315L	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank|ITIH1_uc010hmo.1_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	315	VWFA.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		AGGAGGCACTCCTTAAAATTC	0.542													7	66					0	0	0.000274275	0	0
ITIH3	3699	broad.mit.edu	37	3	52842579	52842579	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:52842579A>C	uc003dfv.2	+	22	2591	c.2555A>C	c.(2554-2556)AAA>ACA	p.K852T	ITIH3_uc011bek.1_Missense_Mutation_p.K660T	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	852					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GGCTCCCAGAAAGACTACAGA	0.527													3	25					0	0	6.4e-05	0	0
CACNA1D	776	broad.mit.edu	37	3	53815622	53815622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:53815622C>T	uc003dgv.3	+	39	4883	c.4720C>T	c.(4720-4722)CGG>TGG	p.R1574W	CACNA1D_uc003dgu.3_Missense_Mutation_p.R1594W|CACNA1D_uc003dgy.3_Missense_Mutation_p.R1559W|CACNA1D_uc003dgw.3_Missense_Mutation_p.R1241W|CACNA1D_uc003dgx.1_Missense_Mutation_p.R750W	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1574	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	TGAAGAACTTCGGGCTGTGAT	0.453													10	69					0	0	0.00136819	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54913436	54913436	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:54913436C>T	uc003dhf.2	+	20	1890	c.1842C>T	c.(1840-1842)TTC>TTT	p.F614F	CACNA2D3_uc011beu.1_Intron|CACNA2D3_uc003dhg.1_Silent_p.F520F|CACNA2D3_uc003dhh.1_Intron|CACNA2D3_uc010hmv.1_Silent_p.F348F|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	614	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GTACTCCTTTCAGGTAGAGCT	0.378													8	30					0	0	0.000442599	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54914887	54914887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:54914887G>A	uc003dhf.2	+	21	1957	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E543K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.E371K|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	637	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AACCATCGAAGAAGGTAAGAT	0.478													22	161					0	0	0.000878237	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54925476	54925476	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:54925476C>T	uc003dhf.2	+	25	2293	c.2245C>T	c.(2245-2247)CAG>TAG	p.Q749*	CACNA2D3_uc003dhg.1_Nonsense_Mutation_p.Q655*|CACNA2D3_uc003dhh.1_RNA|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	749	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GCTCACCAATCAGTAAGTAGG	0.502													6	27					0	0	0.00116845	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55107565	55107565	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:55107565G>A	uc003dhf.2	+	36	3129	c.3081G>A	c.(3079-3081)ATG>ATA	p.M1027I	CACNA2D3_uc003dhg.1_Missense_Mutation_p.M933I|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	1027	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CCATCACCATGGCACCCATTG	0.517													4	33					0	0	0.000602214	0	0
WNT5A	7474	broad.mit.edu	37	3	55504141	55504141	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:55504141C>T	uc003dhn.2	-	5	1440	c.1122G>A	c.(1120-1122)GTG>GTA	p.V374V	WNT5A_uc003dhm.2_Silent_p.V359V|WNT5A_uc010hmw.2_Silent_p.V359V|WNT5A_uc010hmx.2_Silent_p.V285V	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	374					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		CAAACTGGTCCACGATCTCCG	0.547													5	52					0	0	0.00198382	0	0
ARHGEF3	50650	broad.mit.edu	37	3	56779371	56779371	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:56779371G>A	uc003dig.2	-	7	901	c.732C>T	c.(730-732)TCC>TCT	p.S244S	ARHGEF3_uc011bew.1_Silent_p.S244S|ARHGEF3_uc003dih.2_Silent_p.S276S|ARHGEF3_uc011bev.1_Silent_p.S215S|ARHGEF3_uc003dif.2_Silent_p.S250S|ARHGEF3_uc010hmy.1_Silent_p.S42S|ARHGEF3_uc003dii.2_Silent_p.S244S	NM_019555	NP_062455	Q9NR81	ARHG3_HUMAN	Rho guanine nucleotide exchange factor 3 isoform	244	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0161)|Kidney(284;0.019)|OV - Ovarian serous cystadenocarcinoma(275;0.193)		GGCTAAAGGGGGATTCTAAAC	0.478													27	228					0	0	0.001512	0	0
C3orf67	200844	broad.mit.edu	37	3	58870302	58870302	+	Silent	SNP	G	A	A	rs143276468		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:58870302G>A	uc003dkt.1	-	7	718	c.309C>T	c.(307-309)TTC>TTT	p.F103F	uc003dku.1_Intron|C3orf67_uc003dkv.1_5'UTR|C3orf67_uc003dkw.2_Silent_p.F11F	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	103											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		GATGGCCTCCGAATTTTATTT	0.308													18	110					0	0	0.00188189	0	0
CADPS	8618	broad.mit.edu	37	3	62464030	62464030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:62464030G>A	uc003dll.2	-	23	3595	c.3235C>T	c.(3235-3237)CGG>TGG	p.R1079W	CADPS_uc003dlj.1_Missense_Mutation_p.R29W|CADPS_uc003dlk.1_Missense_Mutation_p.R527W|CADPS_uc003dlm.2_Missense_Mutation_p.R1040W|CADPS_uc003dln.2_Missense_Mutation_p.R1000W	NM_003716	NP_003707	Q9ULU8	CAPS1_HUMAN	Ca2+-dependent secretion activator isoform 1	1079	MHD1.|Interaction with DRD2.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|cytosol|synapse	lipid binding|metal ion binding			central_nervous_system(2)|ovary(1)	3		Lung SC(41;0.0452)		BRCA - Breast invasive adenocarcinoma(55;5.98e-05)|KIRC - Kidney renal clear cell carcinoma(15;0.0246)|Kidney(15;0.0334)		TGCAGGTCCCGAATGAAGGTC	0.468													9	46					0	0	0.000442599	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64527205	64527205	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:64527205C>T	uc003dmg.2	-	34	5321	c.5289G>A	c.(5287-5289)CTG>CTA	p.L1763L	ADAMTS9_uc011bfo.1_Silent_p.L1735L|ADAMTS9_uc011bfp.1_Silent_p.L674L	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1763	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CATTCACCTTCAGAAGCTTTC	0.403													36	304					0	0	0.00195071	0	0
MAGI1	9223	broad.mit.edu	37	3	65342476	65342476	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:65342476G>A	uc003dmn.2	-	23	4492	c.3966C>T	c.(3964-3966)TCC>TCT	p.S1322S	MAGI1_uc003dmm.2_3'UTR	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	1351					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		GCTTCTCTGGGGACCGCCTCT	0.721													4	36					0	0	0.00024832	0	0
FOXP1	27086	broad.mit.edu	37	3	71161711	71161711	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:71161711C>T	uc003dol.2	-	3	581	c.258G>A	c.(256-258)AGG>AGA	p.R86R	FOXP1_uc003dom.2_Silent_p.R86R|FOXP1_uc003don.2_RNA|FOXP1_uc003doo.2_Silent_p.R86R|FOXP1_uc003dop.2_Silent_p.R86R|FOXP1_uc003doq.1_Silent_p.R86R|FOXP1_uc003doj.2_5'UTR|FOXP1_uc003dok.2_5'UTR	NM_032682	NP_116071	Q9H334	FOXP1_HUMAN	forkhead box P1 isoform 1	86	Gln-rich.				cardiac muscle cell differentiation|embryo development|immunoglobulin V(D)J recombination|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of immunoglobulin production|positive regulation of mesenchymal cell proliferation|pre-B cell differentiation|regulation of sequence-specific DNA binding transcription factor activity|skeletal muscle tissue development|smooth muscle tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(201;4.62e-05)|Prostate(10;0.0181)|Hepatocellular(537;0.186)|Myeloproliferative disorder(1037;0.209)		BRCA - Breast invasive adenocarcinoma(55;1.17e-05)|Epithelial(33;1.39e-05)|LUSC - Lung squamous cell carcinoma(21;2.35e-05)|Lung(16;4.26e-05)		GTTTGTCATTCCTCTTGGGAG	0.413			T	PAX5	ALL								9	134					0	0	0.000978159	0	0
OR5K3	403277	broad.mit.edu	37	3	98109976	98109977	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:98109976_98109977CC>TT	uc011bgw.1	+	1	467_468	c.467_468CC>TT	c.(466-468)CCC>CTT	p.P156L		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AACCTGCATCCCATGATTGAAG	0.426													12	72					0	0	6.4e-05	0	0
OR5K1	26339	broad.mit.edu	37	3	98189104	98189104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:98189104G>A	uc003dsm.2	+	1	684	c.684G>A	c.(682-684)ATG>ATA	p.M228I		NM_001004736	NP_001004736	Q8NHB7	OR5K1_HUMAN	olfactory receptor, family 5, subfamily K,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)	1						TTTTCAAAATGAAATCCAAAG	0.348													5	34					0	0	0.000602214	0	0
SENP7	57337	broad.mit.edu	37	3	101044876	101044876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:101044876G>A	uc003dut.2	-	24	3175	c.3064C>T	c.(3064-3066)CCT>TCT	p.P1022S	SENP7_uc003duu.2_Missense_Mutation_p.P957S|SENP7_uc003duv.2_Missense_Mutation_p.P989S|SENP7_uc003duw.2_Missense_Mutation_p.P956S|SENP7_uc003dux.2_Missense_Mutation_p.P858S|SENP7_uc003dus.2_Missense_Mutation_p.P210S	NM_020654	NP_065705	Q9BQF6	SENP7_HUMAN	sentrin/SUMO-specific protease 7 isoform 1	1022	Protease.				proteolysis	nucleus	cysteine-type peptidase activity			ovary(3)|lung(2)	5						ACATGACGAGGAAACCACTTC	0.363													5	29					0	0	0.000602214	0	0
CCDC54	84692	broad.mit.edu	37	3	107097204	107097204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:107097204G>A	uc003dwi.1	+	1	1017	c.770G>A	c.(769-771)GGA>GAA	p.G257E		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	257											0						GTTCATGGAGGAAAATGGACA	0.403													14	89					0	0	0.000422831	0	0
MYH15	22989	broad.mit.edu	37	3	108107868	108107868	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:108107868G>A	uc003dxa.1	-	39	5601	c.5544C>T	c.(5542-5544)GCC>GCT	p.A1848A		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1848	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CTCCCCTCTGGGCCTCTGCAC	0.567													10	88					0	0	0.00244969	0	0
KIAA1524	57650	broad.mit.edu	37	3	108301837	108301837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:108301837G>A	uc003dxb.3	-	3	613	c.344C>T	c.(343-345)TCG>TTG	p.S115L	KIAA1524_uc003dxc.1_5'UTR|KIAA1524_uc010hpw.1_5'UTR	NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	115						cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						CAAAAACACCGAATCAGTGTG	0.418													7	30					0	0	0.000157383	0	0
DZIP3	9666	broad.mit.edu	37	3	108407695	108407695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:108407695C>T	uc003dxd.2	+	31	3862	c.3440C>T	c.(3439-3441)CCT>CTT	p.P1147L	DZIP3_uc003dxf.1_Missense_Mutation_p.P1147L|DZIP3_uc011bhm.1_Missense_Mutation_p.P598L	NM_014648	NP_055463	Q86Y13	DZIP3_HUMAN	DAZ interacting protein 3, zinc finger	1147					protein polyubiquitination	cytoplasm	polyubiquitin binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						GAAGAAGAGCCTTGTGTGATC	0.358													4	37					0	0	0.00198382	0	0
MORC1	27136	broad.mit.edu	37	3	108723961	108723961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:108723961G>A	uc003dxl.2	-	19	2056	c.1969C>T	c.(1969-1971)CCA>TCA	p.P657S	MORC1_uc011bhn.1_Missense_Mutation_p.P636S	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	657					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						AGAGCTACTGGAATTCTCTGC	0.343													10	73					0	0	0.000673444	0	0
MORC1	27136	broad.mit.edu	37	3	108751619	108751619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:108751619C>T	uc003dxl.2	-	16	1600	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	MORC1_uc011bhn.1_Missense_Mutation_p.E505K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	505	CW-type.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TCAAAAAATTCTTTTTCCTGA	0.289													11	75					0	0	0.000978159	0	0
DPPA4	55211	broad.mit.edu	37	3	109049429	109049429	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:109049429C>T	uc003dxq.3	-	5	676	c.621G>A	c.(619-621)GCG>GCA	p.A207A	DPPA4_uc011bho.1_Intron|DPPA4_uc011bhp.1_Silent_p.A207A	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	207						nucleus	protein binding			upper_aerodigestive_tract(1)	1						CTGAAATTCTCGCCCAGGAGG	0.552													9	64					0	0	0.000442599	0	0
CD96	10225	broad.mit.edu	37	3	111368615	111368615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:111368615G>A	uc003dxw.2	+	15	1890	c.1720G>A	c.(1720-1722)GAA>AAA	p.E574K	CD96_uc003dxx.2_Missense_Mutation_p.E558K|CD96_uc010hpy.1_Missense_Mutation_p.E557K	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	574	Cytoplasmic (Potential).				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						AGAGCCCAACGAAAGTGATCT	0.463									Opitz_Trigonocephaly_syndrome				7	113					0	0	0.000157383	0	0
PHLDB2	90102	broad.mit.edu	37	3	111604089	111604089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:111604089G>A	uc010hqa.2	+	2	1576	c.1165G>A	c.(1165-1167)GAA>AAA	p.E389K	PHLDB2_uc003dyc.2_Missense_Mutation_p.E416K|PHLDB2_uc003dyd.2_Missense_Mutation_p.E389K|PHLDB2_uc003dyg.2_Missense_Mutation_p.E389K|PHLDB2_uc003dyh.2_Missense_Mutation_p.E389K|PHLDB2_uc003dye.3_Missense_Mutation_p.E389K|PHLDB2_uc003dyf.3_Missense_Mutation_p.E389K	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	389						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TGGATCTGTGGAATTTGATGA	0.512													15	46					0	0	0.00244969	0	0
CD200R1L	344807	broad.mit.edu	37	3	112545857	112545857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:112545857G>A	uc003dzi.1	-	4	888	c.662C>T	c.(661-663)TCC>TTC	p.S221F	CD200R1L_uc011bhw.1_Missense_Mutation_p.S200F|CD200R1L_uc010hqf.1_Missense_Mutation_p.S200F	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	221	Extracellular (Potential).|Ig-like C2-type.					integral to membrane	receptor activity			ovary(1)	1						CAACTTTACGGACAGACTCTT	0.458													5	52					0	0	0.000602214	0	0
WDR52	55779	broad.mit.edu	37	3	113082150	113082150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:113082150C>T	uc003eae.1	-	21	2822	c.2776G>A	c.(2776-2778)GAG>AAG	p.E926K	WDR52_uc003ead.1_Missense_Mutation_p.E107K	NM_018338	NP_060808	Q96MT7	WDR52_HUMAN	WD repeat domain 52 isoform 2	926										central_nervous_system(1)	1						CTAGCATTCTCGATACTGAAA	0.323													13	99					0	0	0.00136819	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113588364	113588364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:113588364C>T	uc003eaq.3	+	3	261	c.185C>T	c.(184-186)TCC>TTC	p.S62F	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc011bim.1_RNA	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	62						integral to membrane				ovary(2)|skin(1)	3						ATTTCAAGTTCCACCTATAAA	0.303													16	199					0	0	0.000566183	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113653314	113653315	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:113653314_113653315GG>TT	uc003eaq.3	+	13	1464_1465	c.1388_1389GG>TT	c.(1387-1389)TGG>TTT	p.W463F	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc011bim.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.W296F|GRAMD1C_uc003eas.2_Missense_Mutation_p.W258F|GRAMD1C_uc003eat.2_Missense_Mutation_p.W122F	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	463						integral to membrane				ovary(2)|skin(1)	3						AAACAGCCATGGGGCCTTGTCA	0.297													13	377					0	0	6.4e-05	0	0
GRAMD1C	54762	broad.mit.edu	37	3	113659148	113659148	+	Missense_Mutation	SNP	C	T	T	rs138939818	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:113659148C>T	uc003eaq.3	+	17	1940	c.1864C>T	c.(1864-1866)CGT>TGT	p.R622C	GRAMD1C_uc011bil.1_RNA|GRAMD1C_uc003ear.2_Missense_Mutation_p.R455C|GRAMD1C_uc003eas.2_Missense_Mutation_p.R417C|GRAMD1C_uc003eat.2_Missense_Mutation_p.R281C	NM_017577	NP_060047	Q8IYS0	GRM1C_HUMAN	GRAM domain containing 1C	622						integral to membrane				ovary(2)|skin(1)	3						TCAGGCCCATCGTTTAAAGGG	0.403													19	215					0	0	0.00152264	0	0
TIGIT	201633	broad.mit.edu	37	3	114014392	114014392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:114014392G>A	uc003ebg.1	+	2	96	c.62G>A	c.(61-63)GGA>GAA	p.G21E		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	21					negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						TCTTCCCTAGGAATGATGACA	0.493													17	121					0	0	0.00278032	0	0
GAP43	2596	broad.mit.edu	37	3	115395152	115395152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:115395152C>T	uc003ebq.2	+	2	709	c.323C>T	c.(322-324)CCT>CTT	p.P108L	GAP43_uc003ebr.2_Missense_Mutation_p.P144L	NM_002045	NP_002036	P17677	NEUM_HUMAN	growth associated protein 43 isoform 2	108					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell differentiation|nervous system development|regulation of filopodium assembly|regulation of growth|response to wounding	cell junction|filopodium membrane|growth cone membrane|synapse	calmodulin binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.164)		GGAGAAACTCCTTCCGAGGAG	0.627													7	28					0	0	0.00198382	0	0
PLA1A	51365	broad.mit.edu	37	3	119325719	119325719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:119325719C>T	uc003ecu.2	+	2	211	c.172C>T	c.(172-174)CCT>TCT	p.P58S	PLA1A_uc003ecv.2_Missense_Mutation_p.P58S|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Intron	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	58					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						CCTCTTTGTCCCTTCGAATCC	0.507													16	161					0	0	0.000422831	0	0
FSTL1	11167	broad.mit.edu	37	3	120128462	120128462	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:120128462G>T	uc003eds.2	-	6	554	c.379C>A	c.(379-381)CAG>AAG	p.Q127K	FSTL1_uc011bjh.1_Missense_Mutation_p.Q92K	NM_007085	NP_009016	Q12841	FSTL1_HUMAN	follistatin-like 1 precursor	127					BMP signaling pathway	extracellular space	calcium ion binding|heparin binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.189)		TCCAGCCACTGGATGATGCGA	0.502													9	49					4.68919e-08	1.88221e-07	0.000673444	1	0
HGD	3081	broad.mit.edu	37	3	120352175	120352175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:120352175C>T	uc003edw.2	-	13	1377	c.1007G>A	c.(1006-1008)AGG>AAG	p.R336K	HGD_uc003edv.2_Missense_Mutation_p.R195K	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	336					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		CATGCAGTTCCCTGGGAAGGT	0.468													22	100					0	0	0.00047179	0	0
STXBP5L	9515	broad.mit.edu	37	3	120977918	120977918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:120977918C>T	uc003eec.3	+	18	2001	c.1861C>T	c.(1861-1863)CCA>TCA	p.P621S	STXBP5L_uc011bji.1_Missense_Mutation_p.P621S	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	621	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GCGAATGCCTCCAGGATATCA	0.378													7	33					0	0	0.000157383	0	0
ARGFX	503582	broad.mit.edu	37	3	121304888	121304888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:121304888G>A	uc003eef.2	+	5	484	c.389G>A	c.(388-390)CGA>CAA	p.R130Q		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	130	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		AGGAACCGGCGATTCAAATTG	0.522													10	40					0	0	0.000673444	0	0
CASR	846	broad.mit.edu	37	3	121980902	121980902	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:121980902G>A	uc003eev.3	+	4	1392	c.1020G>A	c.(1018-1020)AGG>AGA	p.R340R	CASR_uc003eew.3_Silent_p.R340R	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	340	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TCCATCCCAGGAAGTCTGTCC	0.517													6	44					0	0	0.00198382	0	0
CASR	846	broad.mit.edu	37	3	122003591	122003591	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:122003591G>A	uc003eev.3	+	7	3162	c.2790G>A	c.(2788-2790)CAG>CAA	p.Q930Q	CASR_uc003eew.3_Silent_p.Q940Q	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	930	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCGAGAGGCAGAAGCAGCAGC	0.642													6	10					0	0	0.000274275	0	0
SEMA5B	54437	broad.mit.edu	37	3	122642467	122642467	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:122642467G>A	uc003efz.1	-	10	1573	c.1269C>T	c.(1267-1269)TTC>TTT	p.F423F	SEMA5B_uc011bju.1_Silent_p.F365F|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.F423F|SEMA5B_uc010hro.1_Silent_p.F365F|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	423	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		TCTGTACCTGGAAATTGGGGA	0.542													8	50					0	0	0.000274275	0	0
MYLK	4638	broad.mit.edu	37	3	123345668	123345668	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:123345668C>T	uc003ego.2	-	31	5517	c.5235G>A	c.(5233-5235)TGG>TGA	p.W1745*	uc003egk.2_Intron|MYLK_uc010hrr.2_Nonsense_Mutation_p.W180*|MYLK_uc011bjv.1_Nonsense_Mutation_p.W545*|MYLK_uc011bjw.1_Nonsense_Mutation_p.W1745*|MYLK_uc003egp.2_Nonsense_Mutation_p.W1676*|MYLK_uc003egq.2_Nonsense_Mutation_p.W1694*|MYLK_uc003egr.2_Nonsense_Mutation_p.W1625*|MYLK_uc003egs.2_Nonsense_Mutation_p.W1569*	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1745	Calmodulin-binding.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCATTACCTGCCATTTCCTTC	0.483													9	89					0	0	0.000673444	0	0
MYLK	4638	broad.mit.edu	37	3	123385177	123385177	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:123385177G>A	uc003ego.2	-	22	4002	c.3720C>T	c.(3718-3720)ATC>ATT	p.I1240I	MYLK_uc010hrr.2_5'Flank|MYLK_uc011bjv.1_Silent_p.I40I|MYLK_uc011bjw.1_Silent_p.I1240I|MYLK_uc003egp.2_Silent_p.I1171I|MYLK_uc003egq.2_Silent_p.I1240I|MYLK_uc003egr.2_Silent_p.I1171I|MYLK_uc003egs.2_Silent_p.I1064I	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1240	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Ig-like C2-type 8.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GGAACTGGATGATCTGAGGGG	0.557													7	29					0	0	0.000274275	0	0
CCDC14	64770	broad.mit.edu	37	3	123665924	123665924	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:123665924A>G	uc011bjx.1	-	8	1162	c.1071T>C	c.(1069-1071)CTT>CTC	p.L357L	CCDC14_uc003egv.3_Intron|CCDC14_uc003egx.3_Silent_p.L157L|CCDC14_uc010hrt.2_Silent_p.L316L|CCDC14_uc003egy.3_Silent_p.L157L|CCDC14_uc003egz.2_Silent_p.L157L	NM_022757	NP_073594	Q49A88	CCD14_HUMAN	coiled-coil domain containing 14	357						centrosome					0		Lung NSC(201;0.0371)|Prostate(884;0.0405)|Myeloproliferative disorder(1037;0.205)		Lung(219;0.00942)|GBM - Glioblastoma multiforme(114;0.159)		GAGATCGAAAAAGAGACAAAT	0.408													9	134					0	0	0.000442599	0	0
KALRN	8997	broad.mit.edu	37	3	123987691	123987691	+	Silent	SNP	C	T	T	rs140029739	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:123987691C>T	uc003ehg.2	+	5	679	c.552C>T	c.(550-552)ATC>ATT	p.I184I	KALRN_uc010hrv.1_Silent_p.I184I|KALRN_uc003ehf.1_Silent_p.I184I|KALRN_uc011bjy.1_Silent_p.I184I	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	184					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGGAGTGGATCGAACTGCGGC	0.607													8	29					0	0	0.000157383	0	0
ZXDC	79364	broad.mit.edu	37	3	126191014	126191014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:126191014G>A	uc003eiv.2	-	2	1096	c.1042C>T	c.(1042-1044)CAC>TAC	p.H348Y	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Missense_Mutation_p.H348Y	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	348	C2H2-type 6.				positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		CTCCGCAGGTGAATTTTCAGC	0.473													10	65					0	0	0.000978159	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707643	126707643	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:126707643C>T	uc003ejg.2	+	1	142	c.138C>T	c.(136-138)AAC>AAT	p.N46N		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	69	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		GCGCAGTGAACCGCATCTATA	0.647													5	33					0	0	0.00116845	0	0
Unknown	0	broad.mit.edu	37	3	126915912	126915912	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:126915912T>C	uc003eji.1	+	2	624	c.384T>C	c.(382-384)TTT>TTC	p.F128F						RecName: Full=Putative uncharacterized protein C3orf56;																		CCAACCTATTTCCTTTCCCCA	0.607													15	127					0	0	0.000958276	0	0
MCM2	4171	broad.mit.edu	37	3	127325113	127325113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:127325113C>T	uc003ejp.2	+	5	883	c.826C>T	c.(826-828)CGC>TGC	p.R276C	MCM2_uc011bkm.1_Missense_Mutation_p.R146C|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Missense_Mutation_p.R160C	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	276					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						CAAGTACGACCGCATCACCAA	0.632													14	117					0	0	0.000422831	0	0
MGLL	11343	broad.mit.edu	37	3	127411111	127411111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:127411111G>A	uc003ejx.2	-	8	987	c.842C>T	c.(841-843)TCC>TTC	p.S281F	MGLL_uc003ejw.2_Missense_Mutation_p.S291F|MGLL_uc011bko.1_Missense_Mutation_p.S261F|MGLL_uc003ejv.2_Missense_Mutation_p.S255F	NM_001003794	NP_001003794	Q99685	MGLL_HUMAN	monoglyceride lipase isoform 2	281					arachidonic acid metabolic process|fatty acid biosynthetic process|inflammatory response|platelet activation|regulation of endocannabinoid signaling pathway|regulation of inflammatory response|regulation of sensory perception of pain|triglyceride catabolic process	plasma membrane	acylglycerol lipase activity|carboxylesterase activity|lysophospholipase activity|protein homodimerization activity				0						ATGGAAGACGGAGTTGGTGAC	0.537													14	72					0	0	0.000308642	0	0
KBTBD12	166348	broad.mit.edu	37	3	127642844	127642844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:127642844C>T	uc010hsr.2	+	1	943	c.940C>T	c.(940-942)CCC>TCC	p.P314S	KBTBD12_uc003ejy.3_Intron|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Intron|KBTBD12_uc003ejz.2_Missense_Mutation_p.P314S	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	314										ovary(1)	1						CATCTCATCTCCCAAGTACGG	0.418													6	58					0	0	0.00116845	0	0
KIAA1257	57501	broad.mit.edu	37	3	128690150	128690150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:128690150G>A	uc003elj.3	-	8	1344	c.1148C>T	c.(1147-1149)GCC>GTC	p.A383V	KIAA1257_uc003elg.1_Missense_Mutation_p.A383V|KIAA1257_uc003elh.1_5'UTR|KIAA1257_uc003eli.3_Missense_Mutation_p.A271V	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	383											0						CGGCATGACGGCCAGCTGGAT	0.592											OREG0015784	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	20					0	0	0.000602214	0	0
IFT122	55764	broad.mit.edu	37	3	129221686	129221686	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:129221686C>T	uc003emm.2	+	20	2714	c.2508C>T	c.(2506-2508)TCC>TCT	p.S836S	IFT122_uc003eml.2_Silent_p.S887S|IFT122_uc003emn.2_Silent_p.S777S|IFT122_uc003emo.2_Silent_p.S725S|IFT122_uc003emp.2_Silent_p.S686S|IFT122_uc010htc.2_Silent_p.S828S|IFT122_uc011bky.1_Silent_p.S627S|IFT122_uc003emq.2_Silent_p.S676S|IFT122_uc003emr.2_Silent_p.S588S|IFT122_uc011bla.1_Silent_p.S609S|IFT122_uc010hte.2_Silent_p.S162S|IFT122_uc003ems.2_Silent_p.S217S|IFT122_uc011bkx.1_Silent_p.S676S|IFT122_uc010htd.1_Silent_p.S315S	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	836					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						ACCTCAAGTCCCTGGTGCAGC	0.647													6	40					0	0	0.000157383	0	0
COL6A6	131873	broad.mit.edu	37	3	130345371	130345371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:130345371C>T	uc010htl.2	+	24	4952	c.4921C>T	c.(4921-4923)CCT>TCT	p.P1641S	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1641	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGTTGGCTTTCCTGGTCCTCG	0.418													17	88					0	0	0.00121646	0	0
CPNE4	131034	broad.mit.edu	37	3	131274340	131274340	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:131274340C>T	uc003eok.2	-	12	1551	c.1116_splice	c.e12+1	p.T372_splice	CPNE4_uc011blq.1_Splice_Site_p.T390_splice|CPNE4_uc003eol.2_Splice_Site_p.T390_splice|CPNE4_uc003eom.2_Splice_Site_p.T372_splice	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV											upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CACTCACTCACCGTGTACTCT	0.448													6	35					0	0	0.00198382	0	0
DNAJC13	23317	broad.mit.edu	37	3	132211430	132211430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:132211430C>T	uc003eor.2	+	33	3861	c.3796C>T	c.(3796-3798)CGG>TGG	p.R1266W		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1266							heat shock protein binding			ovary(1)|breast(1)	2						TGATACACTCCGGTTTCCAGA	0.363													9	101					0	0	0.000274275	0	0
ESYT3	83850	broad.mit.edu	37	3	138191578	138191578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:138191578G>A	uc003esk.2	+	18	2340	c.2114G>A	c.(2113-2115)AGA>AAA	p.R705K	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	705						integral to membrane|plasma membrane					0						AAGTCACCCAGACCCATGAAA	0.597													51	258					0	0	0.000781405	0	0
PIK3CB	5291	broad.mit.edu	37	3	138456621	138456622	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:138456621_138456622GG>TT	uc011bmq.1	-	4	728_729	c.728_729CC>AA	c.(727-729)CCC>CAA	p.P243Q		NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	243	PI3K-RBD.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						CATAATCATAGGGGCTAACTTC	0.351													14	494					0	0	6.4e-05	0	0
RBP1	5947	broad.mit.edu	37	3	139237345	139237345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:139237345C>T	uc003eti.2	-	3	569	c.458G>A	c.(457-459)GGA>GAA	p.G153E		NM_002899	NP_002890	P09455	RET1_HUMAN	retinol binding protein 1, cellular isoform a	91						cytoplasm	retinal binding|retinol binding|transporter activity				0					Vitamin A(DB00162)	GAGCTTGTCTCCGTCCCAGCT	0.607													5	42					0	0	0.00116845	0	0
NMNAT3	349565	broad.mit.edu	37	3	139292486	139292486	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:139292486C>T	uc003etj.2	-	3	370	c.330G>A	c.(328-330)CAG>CAA	p.Q110Q	NMNAT3_uc003etk.2_Silent_p.Q73Q|NMNAT3_uc003etl.2_RNA|NMNAT3_uc010hul.2_Intron	NM_178177	NP_835471	Q96T66	NMNA3_HUMAN	nicotinamide mononucleotide adenylyltransferase	110					water-soluble vitamin metabolic process	cytosol|mitochondrion	ATP binding|nicotinamide-nucleotide adenylyltransferase activity|nicotinate-nucleotide adenylyltransferase activity				0						GGCCTTCCATCTGGGGTGGAG	0.542													9	38					0	0	0.000978159	0	0
TRIM42	287015	broad.mit.edu	37	3	140406832	140406832	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:140406832G>A	uc003eto.1	+	3	1499	c.1308G>A	c.(1306-1308)GAG>GAA	p.E436E		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	436	COS.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CCCTGAAGGAGACTGGCCAGG	0.537													4	28					0	0	0.00024832	0	0
TRIM42	287015	broad.mit.edu	37	3	140409882	140409883	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:140409882_140409883CC>TT	uc003eto.1	+	4	2124_2125	c.1933_1934CC>TT	c.(1933-1935)CCT>TTT	p.P645F		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	645	Fibronectin type-III.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						TACTTCTCCTCCTAACAACGTA	0.431													9	72					0	0	6.4e-05	0	0
XRN1	54464	broad.mit.edu	37	3	142122526	142122526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:142122526G>A	uc003eus.2	-	18	2160	c.2093C>T	c.(2092-2094)TCA>TTA	p.S698L	XRN1_uc010huu.2_Missense_Mutation_p.S164L|XRN1_uc003eut.2_Missense_Mutation_p.S698L|XRN1_uc003euu.2_Missense_Mutation_p.S698L|XRN1_uc003euv.1_Missense_Mutation_p.S559L	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	698					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						AAGTTCATCTGATTCTGCATC	0.323													16	176					0	0	0.00074312	0	0
PLS1	5357	broad.mit.edu	37	3	142405175	142405175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:142405175G>A	uc010huv.2	+	9	1097	c.938G>A	c.(937-939)GGG>GAG	p.G313E	PLS1_uc003euz.2_Missense_Mutation_p.G313E|PLS1_uc003eva.2_Missense_Mutation_p.G313E	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	313	Actin-binding 1.|CH 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						CCTAAAGGTGGGGAAGATGGA	0.299													24	103					0	0	0.00106085	0	0
PLS1	5357	broad.mit.edu	37	3	142408621	142408621	+	Silent	SNP	G	A	A	rs144604988	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:142408621G>A	uc010huv.2	+	10	1302	c.1143G>A	c.(1141-1143)CCG>CCA	p.P381P	PLS1_uc003euz.2_Silent_p.P381P|PLS1_uc003eva.2_Silent_p.P381P	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	381	Actin-binding 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						TGCACAAGCCGAATAATAATG	0.358													15	64					0	0	0.000958276	0	0
PLS1	5357	broad.mit.edu	37	3	142423340	142423340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:142423340G>A	uc010huv.2	+	14	1700	c.1541G>A	c.(1540-1542)GGT>GAT	p.G514D	PLS1_uc003euz.2_Missense_Mutation_p.G514D|PLS1_uc003eva.2_Missense_Mutation_p.G514D	NM_001145319	NP_001138791	Q14651	PLSI_HUMAN	plastin 1	514	Actin-binding 2.					cytoplasm	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(1)	1						CTTGGAGAGGGTGAAAAAGTA	0.318													27	104					0	0	0.000878237	0	0
C3orf58	205428	broad.mit.edu	37	3	143704449	143704449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:143704449C>T	uc003evo.2	+	2	1257	c.722C>T	c.(721-723)GCT>GTT	p.A241V	C3orf58_uc011bnl.1_Missense_Mutation_p.A32V	NM_173552	NP_775823	Q8NDZ4	CC058_HUMAN	hypothetical protein LOC205428 isoform a	241						COPI vesicle coat|extracellular region				ovary(1)	1						AGAATGGTGGCTGTAAATTAT	0.388													12	173					0	0	0.000422831	0	0
PLSCR2	57047	broad.mit.edu	37	3	146171797	146171797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:146171797C>T	uc003evv.1	-	6	808	c.475G>A	c.(475-477)GAT>AAT	p.D159N	PLSCR2_uc003evw.1_Missense_Mutation_p.D228N	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	159	Cytoplasmic (By similarity).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						ACCTCAAAATCAACACCCGCA	0.313													7	75					0	0	0.000442599	0	0
TM4SF4	7104	broad.mit.edu	37	3	149205542	149205542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:149205542G>A	uc003exd.1	+	3	632	c.401G>A	c.(400-402)GGG>GAG	p.G134E		NM_004617	NP_004608	P48230	T4S4_HUMAN	transmembrane 4 superfamily member 4	134	Extracellular (Potential).					integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			TTCCACGACGGGTAAGGCCAC	0.517													8	40					0	0	0.000274275	0	0
MED12L	116931	broad.mit.edu	37	3	151131073	151131073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:151131073G>A	uc003eyp.2	+	40	6220	c.6182G>A	c.(6181-6183)AGA>AAA	p.R2061K	MED12L_uc011bnz.1_Intron	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	2061	Gln-rich.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CAGCAGCAGAGACTCCTCCAG	0.512													5	49					0	0	0.00116845	0	0
IGSF10	285313	broad.mit.edu	37	3	151154752	151154752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:151154752G>A	uc011bod.1	-	6	7597	c.7597C>T	c.(7597-7599)CGT>TGT	p.R2533C	IGSF10_uc011bob.1_Missense_Mutation_p.R560C|IGSF10_uc011boc.1_Missense_Mutation_p.R512C	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2533	Ig-like C2-type 12.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTGGGTGGACGATTTGTAATT	0.483													7	56					0	0	0.000274275	0	0
IGSF10	285313	broad.mit.edu	37	3	151171270	151171270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:151171270G>A	uc011bod.1	-	3	617	c.617C>T	c.(616-618)TCC>TTC	p.S206F		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	206	LRR 6.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGGCATATAGGAGACCATCTC	0.438													8	77					0	0	0.000157383	0	0
IGSF10	285313	broad.mit.edu	37	3	151171298	151171298	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:151171298G>T	uc011bod.1	-	3	589	c.589C>A	c.(589-591)CTG>ATG	p.L197M		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	197	LRR 6.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGGGAGGTCAGGAAGTTATCA	0.433													11	71					0.00010058	0.000402362	0.00136819	1	0
AADAC	13	broad.mit.edu	37	3	151545367	151545367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:151545367C>T	uc003eze.2	+	5	697	c.607C>T	c.(607-609)CTT>TTT	p.L203F		NM_001086	NP_001077	P22760	AAAD_HUMAN	arylacetamide deacetylase	203	Lumenal (Potential).				positive regulation of triglyceride catabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	carboxylesterase activity|deacetylase activity|serine hydrolase activity|triglyceride lipase activity			skin(2)	2		Myeloproliferative disorder(1037;0.0255)|all_neural(597;0.112)	LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TTCTCAGCTCCTTGATGACCC	0.289													5	51					0	0	0.000602214	0	0
MME	4311	broad.mit.edu	37	3	154884716	154884716	+	Silent	SNP	C	T	T	rs147740086		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:154884716C>T	uc010hvr.1	+	18	1897	c.1686C>T	c.(1684-1686)CCC>CCT	p.P562P	MME_uc003fab.1_Silent_p.P562P|MME_uc003fac.1_Silent_p.P562P|MME_uc003fad.1_Silent_p.P562P|MME_uc003fae.1_Silent_p.P562P	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	562	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	TTCTGCAGCCCCCCTTCTTTA	0.433													8	49					0	0	0.000274275	0	0
PLCH1	23007	broad.mit.edu	37	3	155200053	155200053	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:155200053C>T	uc011bok.1	-	23	4063	c.3786G>A	c.(3784-3786)TCG>TCA	p.S1262S	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.S1224S	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1262					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			TCTCAGAACTCGAGAGTGCTA	0.468													18	98					0	0	0.00121646	0	0
PLCH1	23007	broad.mit.edu	37	3	155200482	155200482	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:155200482C>T	uc011bok.1	-	23	3634	c.3357G>A	c.(3355-3357)GGG>GGA	p.G1119G	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Silent_p.G1081G	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1119					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			AGATGCTTTTCCCTTCCACAA	0.458													8	72					0	0	0.000274275	0	0
VEPH1	79674	broad.mit.edu	37	3	157188156	157188156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:157188156C>T	uc003fbj.1	-	3	618	c.301G>A	c.(301-303)GAA>AAA	p.E101K	VEPH1_uc003fbk.1_Missense_Mutation_p.E101K|VEPH1_uc010hvu.1_Missense_Mutation_p.E101K|VEPH1_uc003fbm.2_Missense_Mutation_p.E101K|VEPH1_uc003fbn.2_Missense_Mutation_p.E101K	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	101						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			GGAGTGTCTTCGTCTTTCCCA	0.473													6	47					0	0	0.00198382	0	0
SI	6476	broad.mit.edu	37	3	164764689	164764689	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:164764689C>T	uc003fei.2	-	16	1889	c.1827G>A	c.(1825-1827)TGG>TGA	p.W609*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	609	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CCATTTGTTCCCATGAAGCAG	0.393										HNSCC(35;0.089)			9	64					0	0	0.000673444	0	0
ZBBX	79740	broad.mit.edu	37	3	167034886	167034886	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:167034886C>T	uc003fep.2	-	14	1424	c.1101G>A	c.(1099-1101)GAG>GAA	p.E367E	ZBBX_uc011bpc.1_Silent_p.E367E|ZBBX_uc003feq.2_Silent_p.E338E	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	367						intracellular	zinc ion binding			ovary(2)	2						GTACTTTGGTCTCCTCACCTA	0.328													4	45					0	0	0.00024832	0	0
SERPINI2	5276	broad.mit.edu	37	3	167183073	167183073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:167183073C>T	uc003fer.1	-	4	845	c.787G>A	c.(787-789)GAA>AAA	p.E263K	SERPINI2_uc003fes.1_Missense_Mutation_p.E273K|SERPINI2_uc003fet.1_Missense_Mutation_p.E263K	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	263					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						ATTAGTTTTTCCACTTCTTCT	0.348													23	136					0	0	0.00278032	0	0
MECOM	2122	broad.mit.edu	37	3	168834324	168834324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:168834324G>A	uc003ffi.3	-	7	1041	c.772C>T	c.(772-774)CCT>TCT	p.P258S	MECOM_uc010hwk.1_Missense_Mutation_p.P281S|MECOM_uc003ffj.3_Missense_Mutation_p.P323S|MECOM_uc011bpi.1_Missense_Mutation_p.P259S|MECOM_uc003ffn.3_Missense_Mutation_p.P258S|MECOM_uc003ffk.2_Missense_Mutation_p.P258S|MECOM_uc003ffl.2_Missense_Mutation_p.P418S|MECOM_uc011bpj.1_Missense_Mutation_p.P446S|MECOM_uc011bpk.1_Missense_Mutation_p.P248S|MECOM_uc010hwn.2_Missense_Mutation_p.P446S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	258					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GGGGTTCCAGGAAGTGAAATG	0.473													12	36					0	0	0.00244969	0	0
MECOM	2122	broad.mit.edu	37	3	168840516	168840516	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:168840516C>T	uc003ffi.3	-	5	536	c.267_splice	c.e5-1	p.S89_splice	MECOM_uc010hwk.1_Splice_Site_p.S112_splice|MECOM_uc003ffj.3_Splice_Site_p.S153_splice|MECOM_uc011bpi.1_Splice_Site_p.S89_splice|MECOM_uc003ffn.3_Splice_Site_p.S89_splice|MECOM_uc003ffk.2_Splice_Site_p.S89_splice|MECOM_uc003ffl.2_Splice_Site_p.S249_splice|MECOM_uc011bpj.1_Splice_Site_p.S277_splice|MECOM_uc011bpk.1_Splice_Site_p.S79_splice|MECOM_uc010hwn.2_Splice_Site_p.S277_splice|MECOM_uc003ffm.1_Intron	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b						apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TTTCTCCAGGCTGTTAAGAGA	0.368													4	35					0	0	0.000602214	0	0
SAMD7	344658	broad.mit.edu	37	3	169656172	169656172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:169656172G>A	uc003fgd.2	+	9	1486	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	SAMD7_uc003fge.2_Missense_Mutation_p.D407N|SAMD7_uc011bpo.1_Missense_Mutation_p.D308N	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	407										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			ACAAGCATTTGATCAACCAGC	0.343													14	69					0	0	0.000422831	0	0
MIR569	693154	broad.mit.edu	37	3	170824477	170824477	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:170824477G>A	hsa-mir-569|MI0003576	-			c.72G>A			TNIK_uc003fhh.2_Intron|TNIK_uc003fhi.2_Intron|TNIK_uc003fhj.2_Intron|TNIK_uc003fhk.2_Intron|TNIK_uc003fhl.2_Intron|TNIK_uc003fhm.2_Intron|TNIK_uc003fhn.2_Intron|TNIK_uc003fho.2_Intron																	0						AACTTTCCAGGATTCATTAAC	0.358													16	75					0	0	0.00074312	0	0
USP13	8975	broad.mit.edu	37	3	179501868	179501868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:179501868C>T	uc003fkh.2	+	21	2612	c.2531C>T	c.(2530-2532)GCC>GTC	p.A844V		NM_003940	NP_003931	Q92995	UBP13_HUMAN	ubiquitin thiolesterase 13	844					ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(1)	1	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			AAAGTTTGTGCCTCAGAAAGG	0.408													26	130					0	0	0.00106085	0	0
LAMP3	27074	broad.mit.edu	37	3	182872090	182872090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:182872090C>T	uc003flh.3	-	2	363	c.139G>A	c.(139-141)GAC>AAC	p.D47N		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	47	Lumenal (Potential).				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			TTTTTTATGTCCTGTACTGTT	0.428													21	114					0	0	0.00152264	0	0
KLHL6	89857	broad.mit.edu	37	3	183226039	183226039	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:183226039C>T	uc003flr.2	-	3	775	c.717G>A	c.(715-717)GTG>GTA	p.V239V	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_Silent_p.V237V	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	239	BACK.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			CCCAGCTCATCACGGTCTCAA	0.333													11	68					0	0	0.00185496	0	0
SENP2	59343	broad.mit.edu	37	3	185332406	185332406	+	Missense_Mutation	SNP	C	T	T	rs145126254		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:185332406C>T	uc003fpn.2	+	11	1159	c.988C>T	c.(988-990)CGC>TGC	p.R330C	SENP2_uc011brv.1_Missense_Mutation_p.R320C|SENP2_uc011brw.1_Missense_Mutation_p.R143C	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	330	Nuclear export signal.				mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GGCCCGACTCCGCCTGGGCAG	0.458													20	302					0	0	0.00278032	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185364834	185364834	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:185364834G>A	uc003fpo.2	-	15	1765	c.1686C>T	c.(1684-1686)ATC>ATT	p.I562I	IGF2BP2_uc010hyi.2_Silent_p.I505I|IGF2BP2_uc010hyj.2_Silent_p.I499I|IGF2BP2_uc010hyk.2_Silent_p.I426I|IGF2BP2_uc010hyl.2_Silent_p.I456I|IGF2BP2_uc003fpp.2_Silent_p.I519I|IGF2BP2_uc003fpq.2_Silent_p.I567I	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	562	KH 4.				anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			AGAAGTGCCCGATAATTCTGA	0.507													36	272					0	0	0.00170553	0	0
FETUB	26998	broad.mit.edu	37	3	186362558	186362558	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:186362558A>T	uc010hyq.2	+	5	704	c.443A>T	c.(442-444)TAC>TTC	p.Y148F	FETUB_uc011brz.1_5'UTR|FETUB_uc003fqn.2_Missense_Mutation_p.Y148F|FETUB_uc003fqo.2_Missense_Mutation_p.Y43F|FETUB_uc010hyr.2_Missense_Mutation_p.Y111F|FETUB_uc010hys.2_5'UTR|FETUB_uc003fqp.3_Missense_Mutation_p.Y83F	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	148						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		AAAAAGATTTACATGACGTGC	0.408													7	85					0	0	0.000157383	0	0
HRG	3273	broad.mit.edu	37	3	186383975	186383975	+	Missense_Mutation	SNP	G	A	A	rs115116898	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:186383975G>A	uc003fqq.2	+	1	178	c.155G>A	c.(154-156)CGG>CAG	p.R52Q		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	52	Cystatin 1.|Interaction with ATP5A1.				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		CAATTGCTGCGGATTGCTGAT	0.537													16	74					0	0	0.000422831	0	0
ST6GAL1	6480	broad.mit.edu	37	3	186760670	186760670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:186760670C>T	uc003frb.2	+	4	611	c.179C>T	c.(178-180)TCC>TTC	p.S60F	ST6GAL1_uc003frc.2_Intron|ST6GAL1_uc003frd.2_Missense_Mutation_p.S60F	NM_173216	NP_775323	P15907	SIAT1_HUMAN	ST6 beta-galactosamide	60	Lumenal (Potential).				humoral immune response|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			central_nervous_system(1)	1	all_cancers(143;2.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;8.53e-19)	GBM - Glioblastoma multiforme(93;0.0939)		GGGTCTGATTCCCAGTCTGTA	0.527													11	41					0	0	0.000978159	0	0
CLDN16	10686	broad.mit.edu	37	3	190120219	190120219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:190120219G>A	uc003fsi.2	+	2	486	c.418G>A	c.(418-420)GAG>AAG	p.E140K	CLDN16_uc010hze.2_Intron	NM_006580	NP_006571	Q9Y5I7	CLD16_HUMAN	claudin 16	140	Extracellular (Potential).				calcium-independent cell-cell adhesion|cellular metal ion homeostasis|excretion	integral to membrane|tight junction	identical protein binding|magnesium ion transmembrane transporter activity|structural molecule activity			ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.018)		CATACTTGCGGAGCATCCCTG	0.478													6	65					0	0	0.000274275	0	0
OSTN	344901	broad.mit.edu	37	3	190967863	190967863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:190967863C>T	uc011bsn.1	+	3	355	c.355C>T	c.(355-357)CCC>TCC	p.P119S		NM_198184	NP_937827	P61366	OSTN_HUMAN	osteocrin precursor	119					cell differentiation|multicellular organismal development|ossification		hormone activity			pancreas(1)|skin(1)	2	all_cancers(143;6.79e-09)|Ovarian(172;0.103)		LUSC - Lung squamous cell carcinoma(58;2.42e-06)|Lung(62;2.86e-06)	GBM - Glioblastoma multiforme(46;0.000254)		ATTTGGTATCCCCATGGATCG	0.353													7	145					0	0	0.000157383	0	0
FGF12	2257	broad.mit.edu	37	3	191888290	191888290	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr3:191888290C>T	uc003fsx.2	-	4	1396	c.570G>A	c.(568-570)AAG>AAA	p.K190K	FGF12_uc003fsy.2_Silent_p.K128K	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	190				K -> E (in Ref. 2; AAB18786).	cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		GCTTGGTTTTCTTCACTCTGT	0.428													21	107					0	0	0.00152264	0	0
PIGG	54872	broad.mit.edu	37	4	509863	509863	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:509863C>T	uc003gak.3	+	6	1139	c.1003C>T	c.(1003-1005)CTA>TTA	p.L335L	PIGG_uc003gaj.3_Silent_p.L335L|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.L202L|PIGG_uc003gal.3_Silent_p.L246L|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Silent_p.L213L|PIGG_uc003gam.2_Silent_p.L246L|PIGG_uc003gan.2_Silent_p.L246L	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	335	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						AGGGAGCCTCCTATTCCCAGT	0.473													7	74					0	0	0.000157383	0	0
IDUA	3425	broad.mit.edu	37	4	998089	998089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:998089G>A	uc003gby.2	+	14	1958	c.1870G>A	c.(1870-1872)GAC>AAC	p.D624N	IDUA_uc003gbz.2_RNA|IDUA_uc003gca.2_Missense_Mutation_p.D646N	NM_000203	NP_000194	P35475	IDUA_HUMAN	alpha-L-iduronidase precursor	624					disaccharide metabolic process	lysosome	cation binding|L-iduronidase activity				0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)		Laronidase(DB00090)	TCGAGCCCTGGACTACTGGGC	0.657													6	31					0	0	0.000157383	0	0
FGFR3	2261	broad.mit.edu	37	4	1806142	1806142	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:1806142C>T	uc003gdr.3	+	9	1417	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I	FGFR3_uc003gdu.2_Silent_p.I389I|FGFR3_uc003gds.3_Intron|FGFR3_uc003gdq.3_Silent_p.I387I	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	387	Helical; (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding			urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	TCCTGTTCATCCTGGTGGTGG	0.657		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				15	130					0	0	0.000566183	0	0
WHSC1	7468	broad.mit.edu	37	4	1952827	1952827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:1952827C>T	uc003gdz.3	+	10	2086	c.1910C>T	c.(1909-1911)TCG>TTG	p.S637L	WHSC1_uc003geb.3_Missense_Mutation_p.S637L|WHSC1_uc003gec.3_Missense_Mutation_p.S637L|WHSC1_uc003ged.3_Missense_Mutation_p.S637L|WHSC1_uc003gee.3_RNA|WHSC1_uc003gef.3_RNA|WHSC1_uc003gei.3_5'UTR|WHSC1_uc011bvh.1_5'UTR|WHSC1_uc010icf.2_5'Flank	NM_001042424	NP_001035889	O96028	NSD2_HUMAN	Wolf-Hirschhorn syndrome candidate 1 protein	637					anatomical structure morphogenesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|cytoplasm|nuclear membrane|nucleolus	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9		all_epithelial(65;1.34e-05)	OV - Ovarian serous cystadenocarcinoma(23;0.00606)	STAD - Stomach adenocarcinoma(129;0.232)		GACGAGCCCTCGGAGTCCCCA	0.552			T	IGH@	MM								6	42					0	0	0.00198382	0	0
TNIP2	79155	broad.mit.edu	37	4	2746545	2746545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:2746545G>A	uc003gfg.2	-	4	872	c.785C>T	c.(784-786)TCC>TTC	p.S262F	TNIP2_uc003gff.2_Missense_Mutation_p.S155F|TNIP2_uc003gfh.2_Intron	NM_024309	NP_077285	Q8NFZ5	TNIP2_HUMAN	A20-binding inhibitor of NF-kappaB activation 2	262	Potential.					cytosol	protein binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		GTTGAGCCGGGAGATCTCCTT	0.622													7	67					0	0	0.000274275	0	0
NOP14	8602	broad.mit.edu	37	4	2941319	2941320	+	Missense_Mutation	DNP	CC	TT	TT	rs146093320	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:2941319_2941320CC>TT	uc003ggj.1	-	16	2324_2325	c.2252_2253GG>AA	c.(2251-2253)CGG>CAA	p.R751Q	C4orf10_uc003ggd.1_Intron|C4orf10_uc003gge.1_Intron|C4orf10_uc003ggg.1_Intron|C4orf10_uc003ggh.2_Intron|C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_Intron|NOP14_uc003ggk.3_Missense_Mutation_p.R751Q|NOP14_uc003ggl.2_Missense_Mutation_p.R751Q	NM_003703	NP_003694	P78316	NOP14_HUMAN	probable nucleolar complex protein 14	751					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	mitochondrion|Noc4p-Nop14p complex|small-subunit processome	snoRNA binding			pancreas(1)	1						AGGTCAGCGGCCGGCAGAGCTG	0.589													8	50					0	0	6.4e-05	0	0
EVC	2121	broad.mit.edu	37	4	5812151	5812151	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:5812151C>T	uc003gil.1	+	20	3052	c.2868C>T	c.(2866-2868)TCC>TCT	p.S956S	EVC_uc003gim.1_RNA|CRMP1_uc003gin.1_Intron	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	956					muscle organ development	integral to membrane				ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				ACCTTGCCTCCGGGGACCAGA	0.582													5	17					0	0	0.00198382	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6107556	6107556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:6107556C>T	uc003giu.3	-	3	544	c.268G>A	c.(268-270)GGG>AGG	p.G90R	JAKMIP1_uc010idb.1_Missense_Mutation_p.G90R|JAKMIP1_uc010idc.1_Intron|JAKMIP1_uc010idd.1_Missense_Mutation_p.G90R|JAKMIP1_uc011bwc.1_Intron|JAKMIP1_uc003giv.3_Missense_Mutation_p.G90R|JAKMIP1_uc010ide.2_Missense_Mutation_p.G90R	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	90	Potential.|Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CGGATGAGCCCCTCGCGCAGC	0.687													4	30					0	0	0.000602214	0	0
WFS1	7466	broad.mit.edu	37	4	6303281	6303281	+	Missense_Mutation	SNP	C	G	G	rs138968466		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:6303281C>G	uc003giy.2	+	8	1925	c.1759C>G	c.(1759-1761)CGG>GGG	p.R587G	WFS1_uc003gix.2_Missense_Mutation_p.R587G|WFS1_uc003giz.2_Missense_Mutation_p.R405G	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	587					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		GCAGTTCGCCCGGTGGTTCAC	0.657													4	235					0	0	0.000602214	0	0
WFS1	7466	broad.mit.edu	37	4	6304104	6304104	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:6304104T>G	uc003giy.2	+	8	2748	c.2582T>G	c.(2581-2583)GTG>GGG	p.V861G	WFS1_uc003gix.2_Missense_Mutation_p.V861G|WFS1_uc003giz.2_Missense_Mutation_p.V679G	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	861					endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		AGGCGGCACGTGAAGATCGAG	0.627													17	163					0	0	0.00121646	0	0
AFAP1	60312	broad.mit.edu	37	4	7820863	7820863	+	Silent	SNP	G	A	A	rs115125282	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:7820863G>A	uc003gkg.1	-	7	1035	c.762C>T	c.(760-762)CCC>CCT	p.P254P	AFAP1_uc011bwk.1_Silent_p.P254P	NM_198595	NP_940997	Q8N556	AFAP1_HUMAN	actin filament associated protein 1	254						actin cytoskeleton|cytoplasm|focal adhesion	actin binding				0						CTGAATCCACGGGGCCACTAC	0.527													8	45					0	0	0.000978159	0	0
HTRA3	94031	broad.mit.edu	37	4	8307707	8307707	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:8307707C>T	uc003gla.2	+	9	1410	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I		NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	402	PDZ.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						GAGGCGGCATCCAAGATGGTG	0.642													9	73					0	0	0.00185496	0	0
GPR125	166647	broad.mit.edu	37	4	22390780	22390780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:22390780G>A	uc003gqm.1	-	18	2919	c.2654C>T	c.(2653-2655)CCC>CTC	p.P885L	GPR125_uc010ieo.1_Missense_Mutation_p.P741L|GPR125_uc003gql.1_Missense_Mutation_p.P12L	NM_145290	NP_660333	Q8IWK6	GP125_HUMAN	G protein-coupled receptor 125 precursor	885	Helical; Name=4; (Potential).				neuropeptide signaling pathway	integral to membrane	G-protein coupled receptor activity			skin(1)	1		Breast(46;0.198)				AACAATGATGGGGATACCACC	0.413													10	160					0	0	0.000673444	0	0
SLC34A2	10568	broad.mit.edu	37	4	25677918	25677918	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:25677918C>G	uc003grr.2	+	13	1701	c.1620C>G	c.(1618-1620)ATC>ATG	p.I540M	SLC34A2_uc003grs.2_Missense_Mutation_p.I539M|SLC34A2_uc010iev.2_Missense_Mutation_p.I539M	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	540	Helical; Name=M7; (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TCTTCCTGATCCCGCTGACGG	0.607													17	90					0	0	0.00278032	0	0
RBPJ	3516	broad.mit.edu	37	4	26417244	26417244	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:26417244G>A	uc003grx.1	+	5	578	c.342G>A	c.(340-342)CAG>CAA	p.Q114Q	RBPJ_uc003gry.1_Silent_p.Q99Q|RBPJ_uc003grz.1_Silent_p.Q114Q|RBPJ_uc011bxt.1_Silent_p.Q114Q|RBPJ_uc003gsa.1_Silent_p.Q100Q|RBPJ_uc003gsb.1_Silent_p.Q101Q|RBPJ_uc003gsc.1_Silent_p.Q100Q	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	114					DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				AAATGCAGCAGCTAAACTTGG	0.398													14	174					0	0	0.000566183	0	0
CCKAR	886	broad.mit.edu	37	4	26483462	26483462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:26483462G>A	uc003gse.1	-	5	1238	c.1085C>T	c.(1084-1086)TCC>TTC	p.S362F		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	362	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	GACGCAGGAGGAGGTGTAGGA	0.627													6	81					0	0	0.00116845	0	0
PCDH7	5099	broad.mit.edu	37	4	31144345	31144345	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:31144345G>A	uc011bxx.1	+	3	4626	c.3618G>A	c.(3616-3618)GAG>GAA	p.E1206E	PCDH7_uc011bxw.1_Silent_p.E1159E	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	Error:Variant_position_missing_in_O60245_after_alignment					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						CATCCTATGAGACCTTCAGTG	0.483													14	86					0	0	0.00185496	0	0
ARAP2	116984	broad.mit.edu	37	4	36069702	36069702	+	Missense_Mutation	SNP	G	A	A	rs147139030		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:36069702G>A	uc003gsq.1	-	33	5280	c.4942C>T	c.(4942-4944)CCA>TCA	p.P1648S	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1648					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGGCCTTTTGGTTGCCCAAGT	0.478													7	86					0	0	0.000274275	0	0
TBC1D1	23216	broad.mit.edu	37	4	38023281	38023281	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:38023281C>T	uc003gtb.2	+	6	1495	c.1152C>T	c.(1150-1152)GCC>GCT	p.A384A	TBC1D1_uc011byd.1_Silent_p.A384A|TBC1D1_uc010ifd.2_Silent_p.A131A|TBC1D1_uc011byf.1_Silent_p.A255A	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	384	PID.					nucleus	Rab GTPase activator activity			ovary(1)	1						AGGCGCCAGCCCAGCTGTGTG	0.537													5	12					0	0	0.000602214	0	0
NSUN7	79730	broad.mit.edu	37	4	40778248	40778248	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:40778248G>T	uc003gvj.3	+	7	1503	c.1008G>T	c.(1006-1008)AAG>AAT	p.K336N	NSUN7_uc003gvi.3_Missense_Mutation_p.K336N	NM_024677	NP_078953			NOL1/NOP2/Sun domain family, member 7												0						CTGACTTGAAGACCCTTTTCA	0.299													22	131					3.01185e-09	1.21047e-08	0.000586117	1	0
UCHL1	7345	broad.mit.edu	37	4	41265263	41265263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:41265263C>T	uc003gvo.2	+	7	577	c.481C>T	c.(481-483)CAT>TAT	p.H161Y	UCHL1_uc003gvp.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvq.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvr.2_Missense_Mutation_p.H80Y|UCHL1_uc003gvs.2_Missense_Mutation_p.H80Y	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	161		Proton donor.		H->D: 10000-fold decrease in enzymatic activity; no change in affinity for ubiquitin ethyl ester.|H->K,Q,N,Y: Abolishes enzymatic activity.	cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						GGTGAATTTCCATTTTATTCT	0.333													16	122					0	0	0.00121646	0	0
LIMCH1	22998	broad.mit.edu	37	4	41496583	41496583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:41496583G>A	uc003gvu.3	+	2	181	c.127G>A	c.(127-129)GAT>AAT	p.D43N	LIMCH1_uc003gvt.1_Intron|LIMCH1_uc003gvv.3_Missense_Mutation_p.D43N|LIMCH1_uc003gvw.3_Missense_Mutation_p.D43N|LIMCH1_uc003gvx.3_Missense_Mutation_p.D43N|LIMCH1_uc003gwe.3_Missense_Mutation_p.D43N|LIMCH1_uc003gvy.3_5'UTR	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	43	CH.				actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						TGGTGATAAAGATTTTCGGAC	0.308													11	159					0	0	0.00185496	0	0
LIMCH1	22998	broad.mit.edu	37	4	41648679	41648679	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:41648679C>T	uc003gvu.3	+	12	1488	c.1434C>T	c.(1432-1434)TCC>TCT	p.S478S	LIMCH1_uc003gvv.3_Silent_p.S478S|LIMCH1_uc003gvw.3_Silent_p.S478S|LIMCH1_uc003gvx.3_Silent_p.S466S|LIMCH1_uc003gwe.3_Silent_p.S478S|LIMCH1_uc003gvy.3_Silent_p.S307S|LIMCH1_uc003gwa.3_Silent_p.S319S|LIMCH1_uc003gvz.3_Silent_p.S863S|LIMCH1_uc011byu.1_Silent_p.S312S|LIMCH1_uc003gwc.3_Silent_p.S324S|LIMCH1_uc003gwd.3_Silent_p.S312S|LIMCH1_uc011byv.1_Silent_p.S229S	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	478					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						ATTTATCCTCCTTCCTGAATG	0.483													38	176					0	0	0.00111076	0	0
ATP8A1	10396	broad.mit.edu	37	4	42526825	42526825	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:42526825A>T	uc003gwr.2	-	21	1994	c.1762T>A	c.(1762-1764)TAC>AAC	p.Y588N	ATP8A1_uc003gws.2_Missense_Mutation_p.Y573N	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	588	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	ATTTCTTTGTATTTTGACGTC	0.313													5	96					0	0	0.00116845	0	0
KCTD8	386617	broad.mit.edu	37	4	44176879	44176879	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:44176879G>A	uc003gwu.2	-	2	1634	c.1350C>T	c.(1348-1350)ATC>ATT	p.I450I		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	450						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						CTGGAATGTGGATTTTTTTAA	0.378										HNSCC(17;0.042)			14	91					0	0	0.00185496	0	0
GABRA2	2555	broad.mit.edu	37	4	46305601	46305601	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:46305601G>A	uc003gxc.3	-	7	1405	c.732C>T	c.(730-732)TTC>TTT	p.F244F	GABRA2_uc010igc.2_Silent_p.F244F|GABRA2_uc011bzc.1_Silent_p.F189F|GABRA2_uc003gxe.2_Silent_p.F244F	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	244	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTTTCAGGTGGAAATGAGCTG	0.353													17	71					0	0	0.000566183	0	0
NFXL1	152518	broad.mit.edu	37	4	47912954	47912954	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:47912954C>T	uc010igh.2	-	3	470	c.293G>A	c.(292-294)AGA>AAA	p.R98K	NFXL1_uc003gxp.2_Missense_Mutation_p.R98K|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Missense_Mutation_p.R98K	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	98						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						AACAAGTTTTCTGGCTGCAGC	0.328													12	59					0	0	0.00185496	0	0
SLC10A4	201780	broad.mit.edu	37	4	48490715	48490715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:48490715G>A	uc003gyc.2	+	3	1292	c.1073G>A	c.(1072-1074)GGA>GAA	p.G358E	ZAR1_uc003gyd.2_5'Flank	NM_152679	NP_689892	Q96EP9	NTCP4_HUMAN	solute carrier family 10, member 4	358	Cytoplasmic (Potential).					integral to membrane	bile acid:sodium symporter activity			central_nervous_system(1)	1						CAATTCATAGGAAGCATGTAC	0.428													22	106					0	0	0.00047179	0	0
FRYL	285527	broad.mit.edu	37	4	48550779	48550779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:48550779G>A	uc003gyh.1	-	40	5421	c.4816C>T	c.(4816-4818)CTC>TTC	p.L1606F	FRYL_uc003gyg.1_Missense_Mutation_p.L302F|FRYL_uc003gyi.1_Missense_Mutation_p.L495F|FRYL_uc003gyj.1_5'Flank	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1606					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TCAATGATGAGATCAGTCAAA	0.338													7	76					0	0	0.000157383	0	0
LRRC66	339977	broad.mit.edu	37	4	52860873	52860873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:52860873G>A	uc003gzi.2	-	4	2328	c.2315C>T	c.(2314-2316)CCC>CTC	p.P772L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	772						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TTTTTCAAAGGGATCTTCTTG	0.468													9	48					0	0	0.000442599	0	0
TECRL	253017	broad.mit.edu	37	4	65194254	65194254	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:65194254G>A	uc003hcv.2	-	3	416	c.307C>T	c.(307-309)CGA>TGA	p.R103*	TECRL_uc003hcw.2_Nonsense_Mutation_p.R103*	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	103					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						AGACCAACTCGAGAAGGGTAC	0.323													9	76					0	0	0.000673444	0	0
UBA6	55236	broad.mit.edu	37	4	68500023	68500023	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:68500023G>A	uc003hdg.3	-	22	2002	c.1950C>T	c.(1948-1950)TCC>TCT	p.S650S		NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	650					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						AAGGTTTGTGGGAAAAGGAAC	0.279													12	76					0	0	0.00136819	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68725308	68725308	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:68725308T>C	uc003hdq.2	-	2	162	c.97A>G	c.(97-99)ACC>GCC	p.T33A	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_Intron	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	33	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						AGAGCTATGGTGACTGCCAGG	0.383													4	38					0	0	0.00024832	0	0
TMPRSS11D	9407	broad.mit.edu	37	4	68725328	68725328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:68725328C>T	uc003hdq.2	-	2	142	c.77G>A	c.(76-78)GGG>GAG	p.G26E	LOC550112_uc003hdl.3_Intron|TMPRSS11D_uc011caj.1_Intron	NM_004262	NP_004253	O60235	TM11D_HUMAN	transmembrane protease, serine 11D	26	Helical; Signal-anchor for type II membrane protein; (Potential).				proteolysis|respiratory gaseous exchange	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						GATCACTACCCCTGCGACGAC	0.383													5	27					0	0	0.000602214	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69093743	69093743	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:69093743C>T	uc003hdw.3	-	10	1273	c.1137G>A	c.(1135-1137)TGG>TGA	p.W379*		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	379	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CAACAAGATGCCAGATATTTC	0.368													4	39					0	0	0.00024832	0	0
YTHDC1	91746	broad.mit.edu	37	4	69184272	69184272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:69184272G>A	uc003hdx.2	-	15	2142	c.1789C>T	c.(1789-1791)CAT>TAT	p.H597Y	YTHDC1_uc003hdy.2_Missense_Mutation_p.H579Y	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	597										upper_aerodigestive_tract(1)|ovary(1)	2						CCCATGTTATGAAATTCCCTC	0.303													9	65					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	4	69343152	69343153	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:69343152_69343153GG>TT	uc003hdz.3	+	8	837_838	c.773_774GG>TT	c.(772-774)CGG>CTT	p.R258L		NM_014058	NP_054777			transmembrane protease, serine 11E																		AAAATGAAACGGGGTCTCCGGA	0.381													9	164					0	0	6.4e-05	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519904	69519904	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:69519904C>T	uc011cal.1	-	5	1202	c.1164G>A	c.(1162-1164)GGG>GGA	p.G388G		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	388					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						CCATAGGGATCCCATGGTAGA	0.443													6	96					0	0	0.00198382	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361279	70361279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:70361279G>A	uc003hek.3	-	1	348	c.301C>T	c.(301-303)CCA>TCA	p.P101S	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.P101S	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	101					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						GTGTCTTTTGGAAGTTCTGCC	0.323													4	22					0	0	0.00024832	0	0
UGT2A1	10941	broad.mit.edu	37	4	70465112	70465112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:70465112C>T	uc003hem.3	-	2	779	c.716G>A	c.(715-717)GGA>GAA	p.G239E	UGT2A1_uc011caq.1_Missense_Mutation_p.G449E|UGT2A1_uc010ihu.2_Missense_Mutation_p.G283E|UGT2A1_uc010iht.2_Missense_Mutation_p.G239E|UGT2A1_uc010ihs.2_Missense_Mutation_p.G240E	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	239	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						AGTGGGTCTTCCTGGAGAAAA	0.358													6	51					0	0	0.00198382	0	0
CSN3	1448	broad.mit.edu	37	4	71114804	71114804	+	Silent	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:71114804A>C	uc003hfe.3	+	4	235	c.177A>C	c.(175-177)GGA>GGC	p.G59G		NM_005212	NP_005203	P07498	CASK_HUMAN	casein kappa precursor	59						extracellular region	protein binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						CTTATTATGGAACCAATTTGT	0.388													3	62					0	0	0.00024832	0	0
PROL1	58503	broad.mit.edu	37	4	71275270	71275270	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:71275270C>T	uc003hfi.2	+	3	399	c.225C>T	c.(223-225)TTC>TTT	p.F75F		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	75	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CATCTTCTTTCTCTCGATTTA	0.463													16	146					0	0	0.00074312	0	0
CXCL9	4283	broad.mit.edu	37	4	76928573	76928573	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:76928573C>A	uc003hjh.1	-	1	69	c.30G>T	c.(28-30)TTG>TTT	p.L10F		NM_002416	NP_002407	Q07325	CXCL9_HUMAN	small inducible cytokine B9 precursor	10					cell-cell signaling|cellular defense response|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space	chemokine activity			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			AGATGATGCCCAAGAGGAAAA	0.393													9	131					0.000978159	0.00389665	0.000978159	1	0
STBD1	8987	broad.mit.edu	37	4	77230768	77230768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:77230768G>A	uc003hka.2	+	2	938	c.692G>A	c.(691-693)GGA>GAA	p.G231E	STBD1_uc003hjy.2_3'UTR|STBD1_uc011cbv.1_3'UTR|STBD1_uc011cbw.1_Missense_Mutation_p.G82E	NM_003943	NP_003934	O95210	STBD1_HUMAN	starch binding domain 1	231	Cytoplasmic (Potential).				carbohydrate metabolic process|muscle contraction	integral to plasma membrane|membrane fraction	carbohydrate binding|catalytic activity|protein binding			ovary(1)	1			Lung(101;0.196)			CTAAACCAGGGAATGGACAAT	0.517													4	27					0	0	0.00024832	0	0
SHROOM3	57619	broad.mit.edu	37	4	77670212	77670212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:77670212G>A	uc011cbx.1	+	6	4749	c.3796G>A	c.(3796-3798)GAT>AAT	p.D1266N	SHROOM3_uc003hkg.2_Missense_Mutation_p.D1044N	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1266					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TCTTGTGAAGGATCCATGTTA	0.418													33	163					0	0	0.00058488	0	0
RASGEF1B	153020	broad.mit.edu	37	4	82363475	82363475	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:82363475C>T	uc003hmi.1	-	9	1128	c.984G>A	c.(982-984)AAG>AAA	p.K328K	RASGEF1B_uc003hmj.1_Silent_p.K327K|RASGEF1B_uc010ijq.1_Silent_p.K286K	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	328	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						ATTTTGCAGTCTTCACTTTGG	0.393													7	85					0	0	0.00198382	0	0
HELQ	113510	broad.mit.edu	37	4	84370062	84370062	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:84370062T>C	uc003hom.2	-	3	1244	c.1065A>G	c.(1063-1065)TTA>TTG	p.L355L	HELQ_uc010ikb.2_Silent_p.L355L|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA|HELQ_uc003hon.1_Silent_p.L249L	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	355	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						AGGAATATATTAAATTTTTTC	0.343								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					9	33					0	0	0.000442599	0	0
CDS1	1040	broad.mit.edu	37	4	85556427	85556427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:85556427C>T	uc011ccv.1	+	8	1231	c.733C>T	c.(733-735)CCA>TCA	p.P245S	CDS1_uc010ike.1_Missense_Mutation_p.P49S	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	245	Helical; (Potential).				signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		GTTCCTTGTTCCAATATCAAG	0.303													10	80					0	0	0.000673444	0	0
WDFY3	23001	broad.mit.edu	37	4	85711007	85711007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:85711007G>A	uc003hpd.2	-	22	3949	c.3541C>T	c.(3541-3543)CGC>TGC	p.R1181C		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1181						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CATCGAAAGCGAGCACAGCAT	0.413													7	70					0	0	0.000157383	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86844860	86844860	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:86844860C>A	uc003hpk.2	+	4	777	c.328C>A	c.(328-330)CAG>AAG	p.Q110K	ARHGAP24_uc003hpj.2_Missense_Mutation_p.Q110K|ARHGAP24_uc003hpl.2_Missense_Mutation_p.Q15K|ARHGAP24_uc010ikf.2_Missense_Mutation_p.Q25K	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	110	PH.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		GGCAAGCACCCAGAATGATAT	0.468													5	26					0.00116845	0.00464689	0.00116845	1	0
HERC3	8916	broad.mit.edu	37	4	89574126	89574126	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:89574126C>T	uc003hrw.1	+	6	736	c.570C>T	c.(568-570)ATC>ATT	p.I190I	HERC3_uc003hrv.2_Silent_p.I190I|HERC3_uc011cdn.1_Silent_p.I72I	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	190	RCC1 4.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		TGGAGGGGATCCCACTGGCTC	0.612													8	34					0	0	0.000274275	0	0
GRID2	2895	broad.mit.edu	37	4	94690479	94690479	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:94690479G>A	uc011cdt.1	+	15	2737	c.2479G>A	c.(2479-2481)GAC>AAC	p.D827N	GRID2_uc011cdu.1_Missense_Mutation_p.D732N	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	827	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGGCGCCCTGGACATAAAGAG	0.517													12	53					0	0	0.000308642	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95197527	95197527	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:95197527C>T	uc003htc.3	+	15	2101	c.1846C>T	c.(1846-1848)CTG>TTG	p.L616L	SMARCAD1_uc003htb.3_Silent_p.L616L|SMARCAD1_uc003htd.3_Silent_p.L616L|SMARCAD1_uc010ila.2_Silent_p.L479L|SMARCAD1_uc011cdw.1_Silent_p.L186L	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	616	Helicase ATP-binding.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		TGACCGTAGTCTGTTTCGACG	0.398													7	61					0	0	0.00198382	0	0
C4orf37	285555	broad.mit.edu	37	4	98902319	98902319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:98902319C>T	uc003htt.1	-	6	853	c.763G>A	c.(763-765)GAA>AAA	p.E255K		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	255											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		CCTGGCATTTCCTCTGTCCTG	0.368													12	142					0	0	0.000308642	0	0
ADH1A	124	broad.mit.edu	37	4	100208132	100208132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:100208132C>T	uc003hur.1	-	3	205	c.134G>A	c.(133-135)GGA>GAA	p.G45E	uc003hum.1_RNA|ADH1A_uc011ceg.1_Missense_Mutation_p.G45E|ADH1A_uc010ilf.1_5'Flank|ADH1A_uc010ilg.1_Missense_Mutation_p.G45E	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	45					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	GCCACAGATTCCTACAGCCAC	0.468													13	63					0	0	0.00185496	0	0
ADH1C	126	broad.mit.edu	37	4	100263952	100263952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:100263952C>T	uc003huu.2	-	8	913	c.828G>A	c.(826-828)ATG>ATA	p.M276I		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	276					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	CGGATCATACCATGGTGTCAA	0.418									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				17	119					0	0	0.000958276	0	0
ENPEP	2028	broad.mit.edu	37	4	111397722	111397722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:111397722C>T	uc003iab.3	+	1	494	c.152C>T	c.(151-153)CCG>CTG	p.P51L		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	51	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	GACGGCGGGCCGGGCACTGCG	0.647													12	82					0	0	0.000308642	0	0
C4orf21	55345	broad.mit.edu	37	4	113505138	113505138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:113505138C>T	uc003iau.2	-	15	4505	c.4294G>A	c.(4294-4296)GTG>ATG	p.V1432M	C4orf21_uc003iav.2_RNA	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	254						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		ACATACCTCACCAAAAGCTGG	0.348													11	81					0	0	0.00244969	0	0
ANK2	287	broad.mit.edu	37	4	114275534	114275534	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:114275534G>A	uc003ibe.3	+	38	5860	c.5760G>A	c.(5758-5760)GGG>GGA	p.G1920G	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Silent_p.G1935G	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1887	Repeat-rich region.|Repeat A.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CGCCCTCCGGGAGGACAGAAA	0.517													6	16					0	0	0.00198382	0	0
NDST3	9348	broad.mit.edu	37	4	118976014	118976014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:118976014G>A	uc003ibx.2	+	2	1352	c.949G>A	c.(949-951)GAG>AAG	p.E317K	NDST3_uc011cgf.1_Missense_Mutation_p.E317K|NDST3_uc003ibw.2_Missense_Mutation_p.E317K	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	317	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						TGTGGGAAAAGAGGGAACAAG	0.368													5	28					0	0	0.000602214	0	0
PRDM5	11107	broad.mit.edu	37	4	121774688	121774688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:121774688C>T	uc003idn.2	-	3	435	c.185G>A	c.(184-186)GGG>GAG	p.G62E	PRDM5_uc003ido.2_Missense_Mutation_p.G62E|PRDM5_uc010ine.2_Missense_Mutation_p.G62E|PRDM5_uc010inf.2_Missense_Mutation_p.G62E|PRDM5_uc003idp.1_Missense_Mutation_p.G62E	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	62	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TCCCTTACTCCCACGAACCTG	0.433													9	115					0	0	0.000978159	0	0
C4orf31	79625	broad.mit.edu	37	4	121957922	121957922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:121957922C>T	uc003idq.1	-	4	1731	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	402											0						TGAATGCCTTCCACATTCTGA	0.408													7	64					0	0	0.000442599	0	0
QRFPR	84109	broad.mit.edu	37	4	122301463	122301463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:122301463C>T	uc010inj.1	-	1	719	c.340G>A	c.(340-342)GGT>AGT	p.G114S	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_Missense_Mutation_p.G114S|QRFPR_uc010inl.1_Missense_Mutation_p.G114S	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	114	Extracellular (Potential).					plasma membrane	neuropeptide Y receptor activity				0						CGACTCTTACCCCCCAGCCAG	0.443													7	34					0	0	0.00198382	0	0
KIAA1109	84162	broad.mit.edu	37	4	123113460	123113460	+	Silent	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:123113460T>G	uc003ieh.2	+	9	1023	c.978T>G	c.(976-978)CCT>CCG	p.P326P	KIAA1109_uc003iei.1_Silent_p.P80P	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	326					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						AAGACTTGCCTCCATGTTGGG	0.373													13	70					0	0	0.00185496	0	0
KIAA1109	84162	broad.mit.edu	37	4	123255673	123255673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:123255673C>T	uc003ieh.2	+	67	11866	c.11821C>T	c.(11821-11823)CCT>TCT	p.P3941S	KIAA1109_uc003iem.2_Intron	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3941					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CACCTTACTTCCTCCCCAGCC	0.398													6	33					0	0	0.000157383	0	0
FAT4	79633	broad.mit.edu	37	4	126240026	126240026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:126240026G>A	uc003ifj.3	+	1	2460	c.2460G>A	c.(2458-2460)ATG>ATA	p.M820I		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	820	Extracellular (Potential).|Cadherin 8.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CATCCACCATGGATCTCAATT	0.463													12	67					0	0	0.00136819	0	0
FAT4	79633	broad.mit.edu	37	4	126241799	126241799	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:126241799G>A	uc003ifj.3	+	1	4233	c.4233G>A	c.(4231-4233)AGG>AGA	p.R1411R		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1411	Cadherin 13.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TTCACGTGAGGGACTTTAATG	0.393													7	110					0	0	0.000274275	0	0
FAT4	79633	broad.mit.edu	37	4	126242732	126242732	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:126242732G>A	uc003ifj.3	+	1	5166	c.5166G>A	c.(5164-5166)CAG>CAA	p.Q1722Q		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1722	Cadherin 16.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCAGAACACAGAGAGCAGAGG	0.358													4	38					0	0	0.000602214	0	0
INTU	27152	broad.mit.edu	37	4	128584691	128584691	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:128584691C>T	uc003ifk.1	+	4	994	c.924C>T	c.(922-924)ATC>ATT	p.I308I	INTU_uc011cgq.1_RNA	NM_015693	NP_056508	Q9ULD6	PDZD6_HUMAN	PDZ domain containing 6	308										ovary(1)	1						CTCCTCATATCATTATGTATC	0.433													6	42					0	0	0.00198382	0	0
SLC25A31	83447	broad.mit.edu	37	4	128689927	128689927	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:128689927G>A	uc003ifl.2	+	5	800	c.654G>A	c.(652-654)AAG>AAA	p.K218K		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	218					transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						CAAAGCCAAAGAAAACTCCAT	0.308													8	58					0	0	0.000157383	0	0
PCDH18	54510	broad.mit.edu	37	4	138449898	138449898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:138449898G>A	uc003ihe.3	-	2	2951	c.2564C>T	c.(2563-2565)TCC>TTC	p.S855F	PCDH18_uc003ihf.3_Missense_Mutation_p.S847F|PCDH18_uc011cgz.1_Missense_Mutation_p.S66F|PCDH18_uc003ihg.3_Missense_Mutation_p.S634F|PCDH18_uc011cha.1_Missense_Mutation_p.S35F	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	855	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GTAGCTCCTGGAATATTTGTT	0.363													9	96					0	0	0.000673444	0	0
PCDH18	54510	broad.mit.edu	37	4	138453104	138453104	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:138453104G>A	uc003ihe.3	-	1	526	c.139C>T	c.(139-141)CTA>TTA	p.L47L	PCDH18_uc003ihf.3_Silent_p.L40L|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Intron|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	47	Extracellular (Potential).|Cadherin 1.				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TCCTCTGATAGTCTTGCAATT	0.398													10	42					0	0	0.000442599	0	0
EDNRA	1909	broad.mit.edu	37	4	148453754	148453754	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:148453754C>T	uc003iky.2	+	4	1337	c.645C>T	c.(643-645)ATC>ATT	p.I215I	EDNRA_uc011cid.1_5'UTR|EDNRA_uc010ipe.1_3'UTR|EDNRA_uc010ipf.1_Intron|EDNRA_uc010ipg.1_Intron	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	215	Helical; Name=4; (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	TGTCCTTTATCCTGGCCATTC	0.463													21	123					0	0	0.00278032	0	0
MAB21L2	10586	broad.mit.edu	37	4	151504524	151504524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:151504524G>A	uc003ilw.2	+	1	1448	c.343G>A	c.(343-345)GAG>AAG	p.E115K	LRBA_uc003ils.3_5'Flank|LRBA_uc003ilt.3_Intron|LRBA_uc003ilu.3_Intron|LRBA_uc010ipj.2_Intron	NM_006439	NP_006430	Q9Y586	MB212_HUMAN	mab-21-like protein 2	115					nervous system development	nucleus				ovary(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.159)		TCTCTGGGTCGAGTTCATCAC	0.627													15	48					0	0	0.000566183	0	0
TLR2	7097	broad.mit.edu	37	4	154626229	154626229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:154626229C>T	uc003inq.2	+	3	2389	c.2170C>T	c.(2170-2172)CTT>TTT	p.L724F	TLR2_uc003inr.2_Missense_Mutation_p.L724F|TLR2_uc003ins.2_Missense_Mutation_p.L724F	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	724	TIR.|Cytoplasmic (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				CCATTTCCGTCTTTTTGATGA	0.433													15	112					0	0	0.000308642	0	0
SFRP2	6423	broad.mit.edu	37	4	154709608	154709608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:154709608G>A	uc003inv.1	-	1	621	c.380C>T	c.(379-381)CCG>CTG	p.P127L		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	127	FZ.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				GGACATGACCGGGGCGCAGCG	0.647													6	66					0	0	0.000157383	0	0
DCHS2	54798	broad.mit.edu	37	4	155158225	155158225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:155158225G>A	uc003inw.2	-	25	6214	c.6214C>T	c.(6214-6216)CCT>TCT	p.P2072S		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2072	Cadherin 18.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		CTCAGGTCAGGATTTCCACCA	0.373													5	45					0	0	0.000602214	0	0
FGA	2243	broad.mit.edu	37	4	155505422	155505422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:155505422C>T	uc003iod.1	-	6	2513	c.2455G>A	c.(2455-2457)GGA>AGA	p.G819R		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	819	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TAGTAGATTCCATTGAGATTG	0.493													7	77					0	0	0.000274275	0	0
FGA	2243	broad.mit.edu	37	4	155508759	155508759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:155508759C>T	uc003iod.1	-	4	473	c.415G>A	c.(415-417)GAA>AAA	p.E139K	FGA_uc003ioe.1_Missense_Mutation_p.E139K|FGA_uc003iof.1_Missense_Mutation_p.E139K	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	139	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	TTCAGGACTTCAATTCTGCTT	0.408													6	52					0	0	0.00198382	0	0
ACCN5	51802	broad.mit.edu	37	4	156775387	156775387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:156775387C>T	uc003ipe.1	-	3	474	c.427G>A	c.(427-429)GAA>AAA	p.E143K		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	143	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		GCAGTAATTTCTTGAAGATGG	0.388													5	38					0	0	0.00116845	0	0
PDGFC	56034	broad.mit.edu	37	4	157771494	157771494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:157771494G>A	uc003iph.1	-	2	684	c.193C>T	c.(193-195)CAT>TAT	p.H65Y	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	65	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		GGATAAGTATGAGGAAACCTT	0.373													6	45					0	0	0.00198382	0	0
PDGFC	56034	broad.mit.edu	37	4	157771501	157771501	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:157771501C>T	uc003iph.1	-	2	677	c.186G>A	c.(184-186)AGG>AGA	p.R62R	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	62	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TATGAGGAAACCTTGGGCTGT	0.368													6	43					0	0	0.00198382	0	0
TRIM60	166655	broad.mit.edu	37	4	165961679	165961679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:165961679G>A	uc003iqy.1	+	3	625	c.455G>A	c.(454-456)AGG>AAG	p.R152K	TRIM60_uc010iqx.1_Missense_Mutation_p.R152K	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	152						intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		GAGCCCTTGAGGAATAATATA	0.383													6	55					0	0	0.00198382	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656143	167656143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:167656143C>T	uc003iri.1	-	12	1381	c.1240G>A	c.(1240-1242)GAA>AAA	p.E414K	SPOCK3_uc011cjp.1_Missense_Mutation_p.E371K|SPOCK3_uc011cjq.1_Missense_Mutation_p.E423K|SPOCK3_uc011cjr.1_Missense_Mutation_p.E294K|SPOCK3_uc003irj.1_Missense_Mutation_p.E411K|SPOCK3_uc011cjs.1_Missense_Mutation_p.E363K|SPOCK3_uc011cjt.1_Missense_Mutation_p.E322K|SPOCK3_uc011cju.1_Missense_Mutation_p.E307K|SPOCK3_uc011cjv.1_Missense_Mutation_p.E316K	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	414	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		tcttcaatttcatcttcatca	0.06													6	29					0	0	0.00116845	0	0
SH3RF1	57630	broad.mit.edu	37	4	170077757	170077757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:170077757C>T	uc003isa.1	-	3	802	c.467G>A	c.(466-468)AGC>AAC	p.S156N	SH3RF1_uc010irc.1_5'UTR	NM_020870	NP_065921	Q7Z6J0	SH3R1_HUMAN	SH3 domain containing ring finger 1	156	SH3 1.					Golgi apparatus|lamellipodium|perinuclear region of cytoplasm	ligase activity|zinc ion binding			breast(2)|lung(1)	3		Prostate(90;0.00267)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)		GTCACCTTTGCTGAATTTAAG	0.398													7	84					0	0	0.00198382	0	0
CLCN3	1182	broad.mit.edu	37	4	170601285	170601285	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:170601285T>C	uc003isi.2	+	3	754	c.245T>C	c.(244-246)GTT>GCT	p.V82A	CLCN3_uc003ish.2_Missense_Mutation_p.V82A|CLCN3_uc011cjz.1_Missense_Mutation_p.V65A|CLCN3_uc011cka.1_Missense_Mutation_p.V82A|CLCN3_uc003isj.1_Missense_Mutation_p.V55A	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	82	Cytoplasmic (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		ATTCCAGGTGTTGGTACATAT	0.348													6	86					0	0	0.00116845	0	0
GLRA3	8001	broad.mit.edu	37	4	175749915	175749915	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:175749915G>A	uc003ity.1	-	1	551	c.48C>T	c.(46-48)TTC>TTT	p.F16F	GLRA3_uc003itz.1_Silent_p.F16F|uc003iua.1_5'Flank|uc003iub.1_5'Flank	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	16					synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	CTGCTTCCCAGAAGTAAAATC	0.448													4	56					0	0	0.00116845	0	0
ADAM29	11086	broad.mit.edu	37	4	175898763	175898763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:175898763G>A	uc003iuc.2	+	5	2757	c.2087G>A	c.(2086-2088)CGA>CAA	p.R696Q	ADAM29_uc003iud.2_Missense_Mutation_p.R696Q|ADAM29_uc010irr.2_Missense_Mutation_p.R696Q|ADAM29_uc011cki.1_Missense_Mutation_p.R696Q	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	696	Cytoplasmic (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGTCTTTATCGACTTTGTAAA	0.343													7	30					0	0	0.000274275	0	0
VEGFC	7424	broad.mit.edu	37	4	177650846	177650846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:177650846C>T	uc003ius.1	-	2	632	c.202G>A	c.(202-204)GAA>AAA	p.E68K		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	68					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		GTCATGAGTTCATCTACACTG	0.438													5	22					0	0	0.00116845	0	0
ODZ3	55714	broad.mit.edu	37	4	183713818	183713818	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:183713818C>G	uc003ivd.1	+	25	6030	c.5993C>G	c.(5992-5994)CCC>CGC	p.P1998R		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1998	YD 12.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAAATTGGTCCCCTGATTGAC	0.423													55	288					0	0	0.000781405	0	0
KLKB1	3818	broad.mit.edu	37	4	187155165	187155165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:187155165G>A	uc003iyy.2	+	4	352	c.281G>A	c.(280-282)GGT>GAT	p.G94D	KLKB1_uc011clc.1_Translation_Start_Site|KLKB1_uc011cld.1_Missense_Mutation_p.G56D	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	94	Apple 1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		CATCGAACAGGTGCAGTTTCT	0.353													6	71					0	0	0.00198382	0	0
KLKB1	3818	broad.mit.edu	37	4	187155171	187155171	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:187155171T>G	uc003iyy.2	+	4	358	c.287T>G	c.(286-288)GTT>GGT	p.V96G	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_Missense_Mutation_p.V58G	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	96	Apple 1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		ACAGGTGCAGTTTCTGGACAT	0.368													8	74					0	0	0.000442599	0	0
KLKB1	3818	broad.mit.edu	37	4	187158042	187158042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:187158042C>T	uc003iyy.2	+	5	507	c.436C>T	c.(436-438)CGC>TGC	p.R146C	KLKB1_uc011clc.1_5'UTR|KLKB1_uc011cld.1_Missense_Mutation_p.R108C	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	146	Apple 2.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		CAGTAACATTCGCTGCCAGTT	0.408													10	84					0	0	0.000978159	0	0
F11	2160	broad.mit.edu	37	4	187197404	187197404	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:187197404C>T	uc003iza.1	+	7	948	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	205	Apple 3.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	GGGACATTTTCCCTAATACGG	0.468													6	34					0	0	0.000157383	0	0
FAT1	2195	broad.mit.edu	37	4	187521261	187521261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:187521261C>T	uc003izf.2	-	22	12082	c.11894G>A	c.(11893-11895)AGA>AAA	p.R3965K	FAT1_uc003ize.2_5'Flank	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3965	Extracellular (Potential).|Laminin G-like.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TTGAGGACTTCTTCCATGCCT	0.493										HNSCC(5;0.00058)			7	98					0	0	0.000274275	0	0
NKD2	85409	broad.mit.edu	37	5	1032302	1032303	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:1032302_1032303CC>TT	uc003jbt.1	+	4	182_183	c.177_178CC>TT	c.(175-180)TTCCGG>TTTTGG	p.R60W	NKD2_uc010itf.1_Missense_Mutation_p.R60W	NM_033120	NP_149111	Q969F2	NKD2_HUMAN	naked cuticle homolog 2	60	Targeting to the basolateral cell membrane.				exocytosis|Wnt receptor signaling pathway	cytoplasmic membrane-bounded vesicle|plasma membrane	calcium ion binding|ubiquitin protein ligase binding				0	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;3.28e-09)		Epithelial(17;0.00093)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00417)|Lung(60;0.165)			AGGGGCCTTTCCGGGAGGACCA	0.644													9	48					0	0	6.4e-05	0	0
SLC6A19	340024	broad.mit.edu	37	5	1213610	1213610	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:1213610C>T	uc003jbw.3	+	5	752	c.696C>T	c.(694-696)GTC>GTT	p.V232V		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	232	Helical; Name=5; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TGCCCTATGTCGTCCTGACCA	0.597													8	30					0	0	0.000673444	0	0
MARCH6	10299	broad.mit.edu	37	5	10405768	10405768	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:10405768C>T	uc003jet.1	+	16	1614	c.1431C>T	c.(1429-1431)CTC>CTT	p.L477L	MARCH6_uc011cmu.1_Silent_p.L429L|MARCH6_uc003jeu.1_Silent_p.L175L|MARCH6_uc011cmv.1_Silent_p.L372L	NM_005885	NP_005876	O60337	MARH6_HUMAN	membrane-associated ring finger (C3HC4) 6	477	Cytoplasmic (Potential).				protein K48-linked ubiquitination	integral to endoplasmic reticulum membrane	ubiquitin conjugating enzyme binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|breast(1)	2						ATAGGCATCTCCGAAGATTTA	0.338													6	86					0	0	0.000274275	0	0
DNAH5	1767	broad.mit.edu	37	5	13721327	13721327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13721327C>T	uc003jfd.2	-	71	12103	c.12061G>A	c.(12061-12063)GGA>AGA	p.G4021R	DNAH5_uc003jfc.2_Missense_Mutation_p.G189R	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4021	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TATTTTTCTCCCATGGAGTCC	0.393									Kartagener_syndrome				5	40					0	0	0.000602214	0	0
DNAH5	1767	broad.mit.edu	37	5	13753442	13753442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13753442C>T	uc003jfd.2	-	63	10814	c.10772G>A	c.(10771-10773)GGA>GAA	p.G3591E	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3591	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GACAATAATTCCATTTTGAAT	0.393									Kartagener_syndrome				11	79					0	0	0.000673444	0	0
DNAH5	1767	broad.mit.edu	37	5	13753656	13753656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13753656C>T	uc003jfd.2	-	63	10600	c.10558G>A	c.(10558-10560)GAT>AAT	p.D3520N	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3520					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AACAGTACATCCCCTAAAATA	0.338									Kartagener_syndrome				5	87					0	0	0.00116845	0	0
DNAH5	1767	broad.mit.edu	37	5	13809289	13809289	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13809289C>T	uc003jfd.2	-	46	7658	c.7616G>A	c.(7615-7617)TGG>TAG	p.W2539*		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2539					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCAGTGCGTCCATGTACCTAA	0.448									Kartagener_syndrome				17	101					0	0	0.00152264	0	0
DNAH5	1767	broad.mit.edu	37	5	13823400	13823400	+	Missense_Mutation	SNP	G	A	A	rs144308691		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13823400G>A	uc003jfd.2	-	40	6701	c.6659C>T	c.(6658-6660)CCT>CTT	p.P2220L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2220					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCCAGTTCAGGGTAACCTGC	0.403									Kartagener_syndrome				25	140					0	0	0.000720815	0	0
DNAH5	1767	broad.mit.edu	37	5	13871751	13871751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13871751G>A	uc003jfd.2	-	23	3562	c.3520C>T	c.(3520-3522)CTC>TTC	p.L1174F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1174	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGGAAATAGAGAATCTGGGAC	0.393									Kartagener_syndrome				5	36					0	0	0.000602214	0	0
DNAH5	1767	broad.mit.edu	37	5	13900441	13900441	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13900441G>A	uc003jfd.2	-	15	2175	c.2133C>T	c.(2131-2133)GAC>GAT	p.D711D		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	711	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ATATCTGAGGGTCAAAGTTTA	0.433									Kartagener_syndrome				10	67					0	0	0.000978159	0	0
DNAH5	1767	broad.mit.edu	37	5	13911601	13911601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:13911601C>T	uc003jfd.2	-	12	1580	c.1538G>A	c.(1537-1539)GGC>GAC	p.G513D	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	513	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGCCACAATGCCCTGAAATAT	0.318									Kartagener_syndrome				14	91					0	0	0.000308642	0	0
TRIO	7204	broad.mit.edu	37	5	14387673	14387673	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:14387673C>T	uc003jff.2	+	22	3703	c.3697C>T	c.(3697-3699)CTG>TTG	p.L1233L	TRIO_uc003jfg.2_RNA|TRIO_uc011cna.1_Silent_p.L1184L|TRIO_uc003jfh.1_Silent_p.L882L	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1233					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					AGATTTCTCTCTGCGGATGGA	0.433													10	122					0	0	0.00185496	0	0
MYO10	4651	broad.mit.edu	37	5	16779670	16779670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:16779670G>A	uc003jft.3	-	9	1382	c.914C>T	c.(913-915)TCC>TTC	p.S305F		NM_012334	NP_036466	Q9HD67	MYO10_HUMAN	myosin X	305	Myosin head-like.				axon guidance|signal transduction	myosin complex	actin binding|ATP binding|motor activity			ovary(2)|pancreas(1)	3						TTCCCTAAAGGATTCCTGGTC	0.323													5	43					0	0	0.00116845	0	0
CDH18	1016	broad.mit.edu	37	5	19747139	19747139	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:19747139G>A	uc003jgc.2	-	3	812	c.435C>T	c.(433-435)TTC>TTT	p.F145F	CDH18_uc003jgd.2_Silent_p.F145F|CDH18_uc011cnm.1_Silent_p.F145F	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	145	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTTTGATGATGAACTCGGATT	0.413													18	113					0	0	0.000566183	0	0
PRDM9	56979	broad.mit.edu	37	5	23526672	23526672	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:23526672G>A	uc003jgo.2	+	11	1657	c.1475G>A	c.(1474-1476)AGA>AAA	p.R492K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	492					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GTGGGAAAAAGAATAATGGAA	0.448										HNSCC(3;0.000094)			5	30					0	0	0.000602214	0	0
CDH10	1008	broad.mit.edu	37	5	24488092	24488092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:24488092C>T	uc003jgr.1	-	12	2379	c.2047G>A	c.(2047-2049)GAA>AAA	p.E683K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	683	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGCTTTTTTTCCTCAATGGCT	0.478										HNSCC(23;0.051)			5	44					0	0	0.00116845	0	0
PDZD2	23037	broad.mit.edu	37	5	32061118	32061118	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:32061118C>T	uc003jhl.2	+	14	2717	c.2329C>T	c.(2329-2331)CAA>TAA	p.Q777*	PDZD2_uc003jhm.2_Nonsense_Mutation_p.Q777*|PDZD2_uc011cnx.1_Nonsense_Mutation_p.Q603*	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	777	PDZ 4.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CCGCGGGGATCAAATCCTGGA	0.498													5	46					0	0	0.000157383	0	0
NPR3	4883	broad.mit.edu	37	5	32739084	32739084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:32739084C>T	uc003jhv.2	+	3	1225	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	NPR3_uc010iuo.2_Missense_Mutation_p.S120F|NPR3_uc011cnz.1_Missense_Mutation_p.S120F|NPR3_uc003jhu.2_Missense_Mutation_p.S336F	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	336	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	GAGAAGTTTTCCATGGAGGTG	0.443													14	101					0	0	0.00185496	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33546277	33546277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:33546277C>T	uc003jia.1	-	22	4496	c.4333G>A	c.(4333-4335)GAG>AAG	p.E1445K	ADAMTS12_uc010iuq.1_Missense_Mutation_p.E1360K	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1445	TSP type-1 7.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						ACTCCTCTCTCCTGAACTCCA	0.493										HNSCC(64;0.19)			4	30					0	0	0.00024832	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576384	33576384	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:33576384G>A	uc003jia.1	-	19	3910	c.3747C>T	c.(3745-3747)CTC>CTT	p.L1249L	ADAMTS12_uc010iuq.1_Silent_p.L1164L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1249	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CTCCCAGAGGGAGCAGAGTGT	0.517										HNSCC(64;0.19)			17	74					0	0	0.000422831	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33576468	33576468	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:33576468G>A	uc003jia.1	-	19	3826	c.3663C>T	c.(3661-3663)CTC>CTT	p.L1221L	ADAMTS12_uc010iuq.1_Silent_p.L1136L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1221	Spacer 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TTTGGCTGGGGAGCAGTCCTT	0.557										HNSCC(64;0.19)			7	82					0	0	0.000157383	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33751618	33751618	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:33751618G>A	uc003jia.1	-	3	688	c.525C>T	c.(523-525)TTC>TTT	p.F175F	ADAMTS12_uc010iuq.1_Silent_p.F175F|ADAMTS12_uc003jib.1_Silent_p.F175F	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	175					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CGGGTTCAATGAAAAAGTCTC	0.418										HNSCC(64;0.19)			19	83					0	0	0.00278032	0	0
SPEF2	79925	broad.mit.edu	37	5	35654685	35654685	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:35654685G>A	uc003jjo.2	+	7	946	c.835G>A	c.(835-837)GAT>AAT	p.D279N	SPEF2_uc003jjn.1_Missense_Mutation_p.D279N|SPEF2_uc003jjq.3_Missense_Mutation_p.D279N	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	279					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GACAACCACCGATTTGTTAAA	0.363													9	65					0	0	0.000673444	0	0
SPEF2	79925	broad.mit.edu	37	5	35807353	35807353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:35807353C>T	uc003jjo.2	+	36	5488	c.5377C>T	c.(5377-5379)CCT>TCT	p.P1793S	SPEF2_uc003jjp.1_Missense_Mutation_p.P1279S|SPEF2_uc003jjr.2_Missense_Mutation_p.P848S	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1793					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CTATAAGTTTCCTGTGAGTAT	0.423													13	127					0	0	0.00074312	0	0
SPEF2	79925	broad.mit.edu	37	5	35814644	35814644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:35814644G>A	uc003jjo.2	+	37	5569	c.5458G>A	c.(5458-5460)GAA>AAA	p.E1820K	SPEF2_uc003jjr.2_Missense_Mutation_p.E875K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1820					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACATACAGAGGAAAAGAAATG	0.313													9	79					0	0	0.000274275	0	0
CAPSL	133690	broad.mit.edu	37	5	35910527	35910527	+	Silent	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:35910527T>G	uc003jjt.1	-	3	351	c.256A>C	c.(256-258)AGG>CGG	p.R86R	CAPSL_uc003jju.1_Silent_p.R86R	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	86	EF-hand 2.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			TTATCAAACCTCCGGAAAAGT	0.358													21	91					0	0	0.00188189	0	0
UGT3A1	133688	broad.mit.edu	37	5	35968221	35968221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:35968221C>T	uc003jjv.1	-	3	368	c.211G>A	c.(211-213)GAA>AAA	p.E71K	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.E71K|UGT3A1_uc011cor.1_Missense_Mutation_p.E37K|UGT3A1_uc003jjy.1_Missense_Mutation_p.E17K	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	71	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TATGATTTTTCCTCCTCTTTA	0.299													6	56					0	0	0.00116845	0	0
RANBP3L	202151	broad.mit.edu	37	5	36269494	36269494	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:36269494C>T	uc003jkh.2	-	4	759	c.266G>A	c.(265-267)GGA>GAA	p.G89E	RANBP3L_uc011cow.1_Missense_Mutation_p.G89E	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	89					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			ATACATACCTCCCTGGGACTG	0.363													13	119					0	0	0.000422831	0	0
NIPBL	25836	broad.mit.edu	37	5	37063933	37063933	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:37063933A>G	uc003jkl.3	+	46	8401	c.7902A>G	c.(7900-7902)GAA>GAG	p.E2634E	NIPBL_uc003jkk.3_Silent_p.E2634E|NIPBL_uc003jkn.2_Silent_p.E327E	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2634					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			ATGAAGAAGAAGAAGAAGGGG	0.388													3	49					0	0	0.000602214	0	0
EGFLAM	133584	broad.mit.edu	37	5	38352349	38352349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:38352349C>T	uc003jlc.1	+	5	785	c.461C>T	c.(460-462)TCG>TTG	p.S154L	EGFLAM_uc003jlb.1_Missense_Mutation_p.S154L	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	154	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ATTGTGGTTTCGGATTCTGAG	0.522													11	138					0	0	0.00136819	0	0
OSMR	9180	broad.mit.edu	37	5	38903999	38903999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:38903999C>T	uc003jln.1	+	8	1374	c.1007C>T	c.(1006-1008)CCT>CTT	p.P336L		NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	336	Fibronectin type-III 1.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TTAATGAATCCTTTTAGTGTC	0.299													7	46					0	0	0.000157383	0	0
FYB	2533	broad.mit.edu	37	5	39153648	39153648	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:39153648G>A	uc003jls.2	-	2	1261	c.1194C>T	c.(1192-1194)TCC>TCT	p.S398S	FYB_uc003jlt.2_Silent_p.S398S|FYB_uc003jlu.2_Silent_p.S398S|FYB_uc011cpl.1_Silent_p.S408S	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	398	Interaction with SKAP1.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			TGGCCGGATGGGATGGTGGAG	0.488													21	101					0	0	0.00152264	0	0
DAB2	1601	broad.mit.edu	37	5	39393445	39393445	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:39393445C>A	uc003jlx.2	-	3	673	c.142G>T	c.(142-144)GTA>TTA	p.V48L	DAB2_uc003jlw.2_Missense_Mutation_p.V48L	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	48	PID.				cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			TTATATTTTACACCATCGCCT	0.393													11	134					2.27111e-07	9.1084e-07	0.00136819	1	0
HEATR7B2	133558	broad.mit.edu	37	5	41009457	41009457	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:41009457C>T	uc003jmj.3	-	32	3835	c.3345G>A	c.(3343-3345)GGG>GGA	p.G1115G	HEATR7B2_uc003jmi.3_Silent_p.G670G	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1115	HEAT 12.						binding			ovary(6)|central_nervous_system(2)	8						GCAAGAGTTTCCCACTGGAGG	0.512													14	90					0	0	0.000422831	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41055945	41055945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:41055945G>A	uc003jmj.3	-	10	1422	c.932C>T	c.(931-933)CCT>CTT	p.P311L	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	311	HEAT 4.						binding			ovary(6)|central_nervous_system(2)	8						CAGCTCTCCAGGATTGGAATG	0.398													15	77					0	0	0.00074312	0	0
C6	729	broad.mit.edu	37	5	41149355	41149355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:41149355C>T	uc003jmk.2	-	17	2821	c.2611G>A	c.(2611-2613)GAA>AAA	p.E871K	C6_uc003jml.1_Missense_Mutation_p.E871K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	871	Complement control factor I module 2.|C5b-binding domain.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GAACATTTTTCCCAGTCATAG	0.418													30	168					0	0	0.0024448	0	0
GHR	2690	broad.mit.edu	37	5	42718806	42718806	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:42718806C>T	uc003jmt.2	+	10	1240	c.1197C>T	c.(1195-1197)TTC>TTT	p.F399F	GHR_uc011cpq.1_Silent_p.F212F	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	399	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AGACTGATTTCAATGCCAATG	0.458													12	55					0	0	0.000308642	0	0
PAIP1	10605	broad.mit.edu	37	5	43533872	43533872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:43533872G>A	uc003job.2	-	9	1467	c.1220C>T	c.(1219-1221)TCT>TTT	p.S407F	PAIP1_uc003joa.2_Missense_Mutation_p.S328F|PAIP1_uc010ivp.2_Missense_Mutation_p.S328F|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.S295F	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	407					mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					AACACCATCAGATGTATAAAA	0.353													19	121					0	0	0.00152264	0	0
HCN1	348980	broad.mit.edu	37	5	45262407	45262407	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:45262407C>T	uc003jok.2	-	8	2314	c.2289G>A	c.(2287-2289)CCG>CCA	p.P763P		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	763	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						CTTCATTTTTCGGCGTGGAGC	0.443													7	37					0	0	0.000157383	0	0
ESM1	11082	broad.mit.edu	37	5	54277897	54277897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:54277897C>T	uc003jpk.2	-	2	448	c.379G>A	c.(379-381)GGA>AGA	p.G127R	ESM1_uc010ivt.2_Intron	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	127					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			AGGCATTTTCCCGTCCCCCTG	0.493													9	58					0	0	0.000673444	0	0
ESM1	11082	broad.mit.edu	37	5	54277969	54277969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:54277969G>A	uc003jpk.2	-	2	376	c.307C>T	c.(307-309)CCC>TCC	p.P103S	ESM1_uc010ivt.2_Intron	NM_007036	NP_008967	Q9NQ30	ESM1_HUMAN	endothelial cell-specific molecule 1 isoform a	103					angiogenesis|regulation of cell growth	extracellular region	growth factor activity|insulin-like growth factor binding				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.116)	Lung(15;0.23)			GTGCCGTAGGGACAGTCTGGG	0.532													5	37					0	0	0.000602214	0	0
IL6ST	3572	broad.mit.edu	37	5	55237253	55237253	+	Missense_Mutation	SNP	C	T	T	rs143321948		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:55237253C>T	uc003jqq.2	-	17	2669	c.2414G>A	c.(2413-2415)GGT>GAT	p.G805D	uc003jqp.2_5'Flank|IL6ST_uc010iwb.2_Missense_Mutation_p.G744D|IL6ST_uc010iwc.2_3'UTR|IL6ST_uc010iwd.2_Missense_Mutation_p.G124D|IL6ST_uc011cqk.1_Missense_Mutation_p.G516D|IL6ST_uc003jqr.2_3'UTR	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	805	Cytoplasmic (Potential).				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				AATACCATCACCGCCATCTAC	0.448			O		hepatocellular ca								7	82					0	0	0.00198382	0	0
PDE4D	5144	broad.mit.edu	37	5	58271613	58271613	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:58271613G>A	uc003jsa.2	-	14	2056	c.1884C>T	c.(1882-1884)CTC>CTT	p.L628L	PDE4D_uc003jrx.2_Silent_p.L492L|PDE4D_uc003jry.2_Silent_p.L326L|PDE4D_uc003jrz.2_Silent_p.L564L|PDE4D_uc003jsb.2_Silent_p.L567L|PDE4D_uc003jrt.2_Silent_p.L326L|PDE4D_uc003jru.2_Silent_p.L404L|PDE4D_uc003jrv.2_Silent_p.L498L|PDE4D_uc003jrw.2_Silent_p.L506L|PDE4D_uc003jrs.2_Silent_p.L337L	NM_001104631	NP_001098101	Q08499	PDE4D_HUMAN	phosphodiesterase 4D isoform 1	628					signal transduction	cytosol|insoluble fraction|membrane|microtubule organizing center|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(5;6.5e-58)|all_epithelial(5;1.75e-57)|all_lung(5;6.84e-18)|Lung NSC(5;1.29e-17)|Melanoma(5;0.00168)|Prostate(74;0.00234)|Colorectal(97;0.00629)|Ovarian(174;0.00832)|Breast(144;0.00996)|all_hematologic(6;0.0344)|Hepatocellular(6;0.0742)|Esophageal squamous(6;0.0954)		Epithelial(2;2.6e-55)|all cancers(2;2.66e-49)|OV - Ovarian serous cystadenocarcinoma(10;1.48e-39)|Colorectal(2;8.29e-08)|Lung(2;4.47e-07)|STAD - Stomach adenocarcinoma(2;1.11e-05)|COAD - Colon adenocarcinoma(2;0.00012)|LUSC - Lung squamous cell carcinoma(2;0.000775)|LUAD - Lung adenocarcinoma(3;0.0173)|READ - Rectum adenocarcinoma(2;0.0276)	Adenosine monophosphate(DB00131)|Dyphylline(DB00651)	GGTACAGCTGGAGAGGCTTTG	0.493													11	46					0	0	0.00244969	0	0
RGS7BP	401190	broad.mit.edu	37	5	63894207	63894207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:63894207G>A	uc003jtj.2	+	5	627	c.627G>A	c.(625-627)ATG>ATA	p.M209I	RGS7BP_uc011cqu.1_Missense_Mutation_p.M76I	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	209					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		TGAGAGAAATGAAAAACCTTT	0.323													10	166					0	0	0.000673444	0	0
CWC27	10283	broad.mit.edu	37	5	64084836	64084836	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:64084836C>T	uc003jtn.1	+	7	877	c.658C>T	c.(658-660)CGA>TGA	p.R220*	CWC27_uc003jtl.2_Nonsense_Mutation_p.R220*|CWC27_uc003jtm.2_Nonsense_Mutation_p.R220*|CWC27_uc010iwt.1_Nonsense_Mutation_p.R220*	NM_005869	NP_005860	Q6UX04	CWC27_HUMAN	serologically defined colon cancer antigen 10	220	Potential.				protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity				0						GGAAGTAAATCGAGTTAGTCA	0.209													6	40					0	0	0.000157383	0	0
SFRS12	140890	broad.mit.edu	37	5	65459653	65459653	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:65459653C>T	uc003juo.2	+	7	1101	c.441C>T	c.(439-441)CCC>CCT	p.P147P	SFRS12_uc003jun.2_Silent_p.P263P|SFRS12_uc010iwy.2_Silent_p.P147P	NM_139168	NP_631907	Q8WXA9	SREK1_HUMAN	splicing factor, arginine/serine-rich 12 isoform	147					mRNA processing|RNA splicing	spliceosomal complex	nucleic acid binding|nucleotide binding|protein binding				0		Lung NSC(167;9.34e-06)|Prostate(74;0.00187)|Ovarian(174;0.0545)|Breast(144;0.0928)|Colorectal(97;0.234)		Lung(70;0.00449)		TAGTAAAACCCCCTGAGATGA	0.353													6	46					0	0	0.00116845	0	0
BDP1	55814	broad.mit.edu	37	5	70819988	70819988	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:70819988T>C	uc003kbp.1	+	25	5873	c.5610T>C	c.(5608-5610)GCT>GCC	p.A1870A	BDP1_uc003kbo.2_Silent_p.A1870A|BDP1_uc003kbq.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1870					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		CTCTTCGGGCTTCCCAGGAAG	0.468													19	118					0	0	0.00188189	0	0
MAP1B	4131	broad.mit.edu	37	5	71495579	71495579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:71495579C>T	uc003kbw.3	+	5	6638	c.6397C>T	c.(6397-6399)CCA>TCA	p.P2133S	MAP1B_uc010iyw.1_Missense_Mutation_p.P2150S|MAP1B_uc010iyx.1_Missense_Mutation_p.P2007S|MAP1B_uc010iyy.1_Missense_Mutation_p.P2007S	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2133						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CCCACCGCCTCCAGGAGGAAA	0.562													5	58					0	0	0.000602214	0	0
UTP15	84135	broad.mit.edu	37	5	72874889	72874889	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:72874889G>A	uc003kcw.1	+	11	1417	c.1194G>A	c.(1192-1194)AAG>AAA	p.K398K	UTP15_uc011cso.1_Silent_p.K379K|UTP15_uc011csp.1_Silent_p.K208K|UTP15_uc010ize.1_Silent_p.K398K	NM_032175	NP_115551	Q8TED0	UTP15_HUMAN	UTP15, U3 small nucleolar ribonucleoprotein,	398					rRNA processing	cytoplasm|nucleolus					0		Lung NSC(167;0.00405)|Ovarian(174;0.0129)		OV - Ovarian serous cystadenocarcinoma(47;7.76e-55)		CCATCATAAAGGAGTTAAATC	0.373													8	54					0	0	0.000274275	0	0
RGNEF	64283	broad.mit.edu	37	5	73160698	73160698	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:73160698G>A	uc011csq.1	+	16	2114	c.2103_splice	c.e16+1	p.K701_splice	RGNEF_uc003kcx.2_Splice_Site_p.K701_splice|RGNEF_uc010izf.2_Splice_Site_p.K701_splice|RGNEF_uc011csr.1_Splice_Site_p.K388_splice	NM_001080479	NP_001073948	Q8N1W1	RGNEF_HUMAN	Rho-guanine nucleotide exchange factor						cell differentiation|intracellular signal transduction|regulation of Rho protein signal transduction	cytoplasm|plasma membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|RNA binding				0		Lung NSC(167;0.0378)|all_lung(232;0.04)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.25e-51)		ATGCACCAAGGTAATTGCTCA	0.343													5	39					0	0	0.00116845	0	0
ENC1	8507	broad.mit.edu	37	5	73932025	73932025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:73932025C>T	uc003kdc.3	-	2	1417	c.286G>A	c.(286-288)GAA>AAA	p.E96K	ENC1_uc011css.1_Missense_Mutation_p.E23K	NM_003633	NP_003624	O14682	ENC1_HUMAN	ectodermal-neural cortex (with BTB-like domain)	96	BTB.				nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding			ovary(1)|pancreas(1)|skin(1)	3		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		TCCAAGACTTCTGGGTGGATG	0.517													11	53					0	0	0.000978159	0	0
F2RL1	2150	broad.mit.edu	37	5	76129487	76129488	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:76129487_76129488GG>TT	uc003keo.2	+	2	1230_1231	c.1055_1056GG>TT	c.(1054-1056)AGG>ATT	p.R352I		NM_005242	NP_005233	P55085	PAR2_HUMAN	coagulation factor II (thrombin) receptor-like 1	352	Cytoplasmic (Potential).				blood coagulation|elevation of cytosolic calcium ion concentration|positive regulation of leukocyte chemotaxis|positive regulation of positive chemotaxis|regulation of blood coagulation	Golgi apparatus|integral to plasma membrane	receptor binding|thrombin receptor activity			central_nervous_system(1)	1		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;7.7e-51)|Epithelial(54;2.77e-45)|all cancers(79;3.47e-41)		CATGATTTCAGGGATCATGCAA	0.475													14	450					0	0	6.4e-05	0	0
BHMT2	23743	broad.mit.edu	37	5	78373364	78373364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:78373364C>T	uc003kft.2	+	2	118	c.95C>T	c.(94-96)ACT>ATT	p.T32I	BHMT2_uc011cth.1_Missense_Mutation_p.T32I	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	32	Hcy-binding.				methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	TTTCTCATTACTCTGGAGAAG	0.522													15	124					0	0	0.000308642	0	0
CMYA5	202333	broad.mit.edu	37	5	79027333	79027333	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:79027333G>A	uc003kgc.2	+	2	2817	c.2745G>A	c.(2743-2745)GAG>GAA	p.E915E		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	915						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGGCACAGGAGGAAGAAATTG	0.423													8	43					0	0	0.000157383	0	0
CMYA5	202333	broad.mit.edu	37	5	79031757	79031757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:79031757C>T	uc003kgc.2	+	2	7241	c.7169C>T	c.(7168-7170)TCA>TTA	p.S2390L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2390						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CAGCCAAAATCAGCTTCCTCC	0.338													10	54					0	0	0.000442599	0	0
CMYA5	202333	broad.mit.edu	37	5	79031766	79031766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:79031766C>T	uc003kgc.2	+	2	7250	c.7178C>T	c.(7177-7179)TCC>TTC	p.S2393F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2393						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TCAGCTTCCTCCAACTTTGCA	0.343													6	55					0	0	0.000274275	0	0
CMYA5	202333	broad.mit.edu	37	5	79032011	79032011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:79032011G>A	uc003kgc.2	+	2	7495	c.7423G>A	c.(7423-7425)GAA>AAA	p.E2475K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2475						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GGTGCTGGCAGAAAAACAAAA	0.378													7	47					0	0	0.00198382	0	0
XRCC4	7518	broad.mit.edu	37	5	82400780	82400780	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:82400780C>T	uc003kib.2	+	2	170	c.42C>T	c.(40-42)CCC>CCT	p.P14P	XRCC4_uc003kia.1_Silent_p.P14P|XRCC4_uc003kid.2_Silent_p.P14P|XRCC4_uc003kic.2_Silent_p.P14P|XRCC4_uc003kie.2_Silent_p.P14P|XRCC4_uc003kif.1_Silent_p.P14P	NM_022406	NP_071801	Q13426	XRCC4_HUMAN	X-ray repair cross complementing protein 4	14					DNA ligation involved in DNA repair|double-strand break repair via nonhomologous end joining|initiation of viral infection|positive regulation of ligase activity|provirus integration|response to X-ray	cytosol|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|nucleoplasm	DNA binding|protein C-terminus binding			skin(3)	3		Lung NSC(167;0.00132)|all_lung(232;0.00154)|Ovarian(174;0.034)		OV - Ovarian serous cystadenocarcinoma(54;1.44e-38)|Epithelial(54;3.72e-33)|all cancers(79;9.22e-28)		TTTCTGAACCCAGTATAACTC	0.343								NHEJ					11	59					0	0	0.000978159	0	0
VCAN	1462	broad.mit.edu	37	5	82808152	82808152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:82808152C>T	uc003kii.3	+	6	1335	c.979C>T	c.(979-981)CGT>TGT	p.R327C	VCAN_uc003kij.3_Missense_Mutation_p.R327C|VCAN_uc010jau.2_Missense_Mutation_p.R327C|VCAN_uc003kik.3_Missense_Mutation_p.R327C|VCAN_uc003kih.3_Missense_Mutation_p.R327C	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	327	Link 2.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AACCCTGTATCGTTTTGAGAA	0.507													11	38					0	0	0.00244969	0	0
TMEM161B	153396	broad.mit.edu	37	5	87516402	87516402	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:87516402G>A	uc003kjc.2	-	5	549	c.424C>T	c.(424-426)CTA>TTA	p.L142L	TMEM161B_uc011cty.1_Silent_p.L131L|TMEM161B_uc010jax.2_RNA|TMEM161B_uc011ctz.1_Silent_p.L9L|TMEM161B_uc011ctx.1_5'UTR	NM_153354	NP_699185	Q8NDZ6	T161B_HUMAN	transmembrane protein 161B	142	Helical; (Potential).					integral to membrane		p.L142L(1)		skin(2)	2		all_cancers(142;0.000275)|Lung NSC(167;0.00901)|all_lung(232;0.0111)|Colorectal(57;0.0959)|Ovarian(174;0.1)		OV - Ovarian serous cystadenocarcinoma(54;6.24e-36)|Epithelial(54;6.8e-31)|all cancers(79;1.07e-26)		AAAACAAGTAGGCACCAGACT	0.338													18	94					0	0	0.000958276	0	0
GPR98	84059	broad.mit.edu	37	5	90001217	90001217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:90001217G>A	uc003kju.2	+	37	8483	c.8387G>A	c.(8386-8388)GGA>GAA	p.G2796E	GPR98_uc003kjt.2_Missense_Mutation_p.G502E|GPR98_uc003kjv.2_Missense_Mutation_p.G396E	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2796	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACATTTTTAGGAGTTCCACCA	0.428													9	129					0	0	0.000274275	0	0
GPR98	84059	broad.mit.edu	37	5	90012354	90012354	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:90012354C>T	uc003kju.2	+	43	9351	c.9255C>T	c.(9253-9255)TTC>TTT	p.F3085F	GPR98_uc003kjt.2_Silent_p.F791F|GPR98_uc003kjv.2_Silent_p.F685F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3085	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGCACTTTTTCCTAAGAGAGC	0.408													5	48					0	0	0.000602214	0	0
GPR98	84059	broad.mit.edu	37	5	90136683	90136683	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:90136683C>T	uc003kju.2	+	78	16996	c.16900C>T	c.(16900-16902)CAG>TAG	p.Q5634*	GPR98_uc003kjt.2_Nonsense_Mutation_p.Q3340*|GPR98_uc003kjw.2_Nonsense_Mutation_p.Q1295*	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5634	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GCTTGCAGATCAGCTACATCA	0.468													8	33					0	0	0.000274275	0	0
NR2F1	7025	broad.mit.edu	37	5	92929486	92929486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:92929486C>T	uc003kkj.2	+	3	2897	c.1210C>T	c.(1210-1212)CGC>TGC	p.R404C		NM_005654	NP_005645	P10589	COT1_HUMAN	nuclear receptor subfamily 2, group F, member 1	404					negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			urinary_tract(1)|ovary(1)|lung(1)	3		all_cancers(142;1.62e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0126)|Lung NSC(167;0.0155)|Ovarian(174;0.0218)|Prostate(281;0.173)|Colorectal(57;0.19)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0416)|all cancers(79;9.57e-18)		AACTCTCATCCGCGATATGTT	0.587													16	77					0	0	0.00074312	0	0
TTC37	9652	broad.mit.edu	37	5	94814123	94814123	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:94814123G>A	uc003klb.2	-	40	4506	c.4236C>T	c.(4234-4236)TCC>TCT	p.S1412S		NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	1412	TPR 20.						binding			ovary(3)|pancreas(1)	4						TCATTCCTTGGGATTGATACA	0.438													5	41					0	0	0.00116845	0	0
LIX1	167410	broad.mit.edu	37	5	96440917	96440918	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:96440917_96440918CC>TT	uc003kmy.3	-	4	699_700	c.459_460GG>AA	c.(457-462)ATGGGG>ATAAGG	p.153_154MG>IR		NM_153234	NP_694966	Q8N485	LIX1_HUMAN	limb expression 1	153_154										ovary(1)	1		all_cancers(142;4.28e-07)|all_epithelial(76;1.06e-09)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0318)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.0733)		ATAGTCTTCCCCATGTTTGACT	0.446													7	55					0	0	6.4e-05	0	0
RIOK2	55781	broad.mit.edu	37	5	96512855	96512855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:96512855G>A	uc003kmz.2	-	4	573	c.463C>T	c.(463-465)CGT>TGT	p.R155C	RIOK2_uc003kna.3_Missense_Mutation_p.R155C	NM_018343	NP_060813	Q9BVS4	RIOK2_HUMAN	RIO kinase 2 isoform 1	155							ATP binding|protein serine/threonine kinase activity			kidney(1)	1		all_cancers(142;0.000125)|all_epithelial(76;8.48e-07)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0676)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0657)		GCAGAGAGACGAGATAAATAT	0.338													24	122					0	0	0.00047179	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101774450	101774450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:101774450G>A	uc003knn.2	-	7	1319	c.1147C>T	c.(1147-1149)CCA>TCA	p.P383S	SLCO6A1_uc003kno.2_Intron|SLCO6A1_uc003knp.2_Missense_Mutation_p.P383S|SLCO6A1_uc003knq.2_Missense_Mutation_p.P321S	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	383	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		ATGAGCACTGGATTCTTCATC	0.264													20	89					0	0	0.00152264	0	0
PAM	5066	broad.mit.edu	37	5	102260734	102260734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:102260734C>T	uc003knw.2	+	5	803	c.430C>T	c.(430-432)CGG>TGG	p.R144W	PAM_uc003kns.2_Missense_Mutation_p.R144W|PAM_uc003knt.2_Missense_Mutation_p.R144W|PAM_uc003knu.2_Missense_Mutation_p.R144W|PAM_uc003knv.2_Missense_Mutation_p.R144W|PAM_uc011cuz.1_Missense_Mutation_p.R47W	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	144	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	TCCCCCTACCCGGCTCCCCAA	0.408													29	87					0	0	0.000692331	0	0
CAMK4	814	broad.mit.edu	37	5	110819866	110819866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:110819866G>A	uc011cvj.1	+	12	1223	c.1124G>A	c.(1123-1125)GGA>GAA	p.G375E	CAMK4_uc003kpf.2_Missense_Mutation_p.G375E|CAMK4_uc010jbv.2_Missense_Mutation_p.G178E|CAMK4_uc003kpg.2_Missense_Mutation_p.G66E	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	375					activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ATTCCAGAAGGAGAGAAAATT	0.532													15	61					0	0	0.00244969	0	0
DCP2	167227	broad.mit.edu	37	5	112327832	112327832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:112327832C>T	uc003kqh.2	+	3	418	c.220C>T	c.(220-222)CCG>TCG	p.P74S	DCP2_uc011cwa.1_Intron|DCP2_uc010jcc.2_5'UTR	NM_152624	NP_689837	Q8IU60	DCP2_HUMAN	DCP2 decapping enzyme	74					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus|RNA-induced silencing complex	exoribonuclease activity, producing 5'-phosphomonoesters|manganese ion binding|protein binding|protein binding|RNA binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		OV - Ovarian serous cystadenocarcinoma(64;6.98e-08)|Epithelial(69;7.87e-08)|all cancers(49;1.06e-05)|COAD - Colon adenocarcinoma(37;0.0123)|Colorectal(14;0.0171)		CAGTCATTGTCCGTTTTTGCT	0.338													9	185					0	0	0.000978159	0	0
TRIM36	55521	broad.mit.edu	37	5	114482989	114482989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:114482989C>T	uc003kqs.2	-	3	910	c.401G>A	c.(400-402)CGA>CAA	p.R134Q	TRIM36_uc011cwc.1_Missense_Mutation_p.R122Q|TRIM36_uc003kqt.2_5'UTR	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	134						acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		AGTGAAGTTTCGAAACAGACC	0.473													16	124					0	0	0.000308642	0	0
TRIM36	55521	broad.mit.edu	37	5	114515705	114515705	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:114515705A>T	uc003kqs.2	-	1	539	c.30T>A	c.(28-30)TTT>TTA	p.F10L	TRIM36_uc003kqt.2_5'UTR|TRIM36_uc003kqu.2_Missense_Mutation_p.F10L|TRIM36_uc003kqv.2_Missense_Mutation_p.F10L	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	10						acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		TGATGTAGCCAAATTCACTCA	0.413													10	117					0	0	0.00136819	0	0
DMXL1	1657	broad.mit.edu	37	5	118533521	118533521	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:118533521C>T	uc003ksd.2	+	32	7796	c.7615C>T	c.(7615-7617)CGA>TGA	p.R2539*	DMXL1_uc010jcl.1_Nonsense_Mutation_p.R2539*	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	2539										ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		AGTTCTTCTCCGACGACTTGA	0.433													18	89					0	0	0.00152264	0	0
PRR16	51334	broad.mit.edu	37	5	120022361	120022361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:120022361C>T	uc003ksq.2	+	2	1035	c.872C>T	c.(871-873)CCA>CTA	p.P291L	PRR16_uc003ksp.2_Missense_Mutation_p.P268L|PRR16_uc003ksr.2_Missense_Mutation_p.P221L	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	291	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		GCACCAAAACCACAGAAGACG	0.393													9	45					0	0	0.000673444	0	0
SNCAIP	9627	broad.mit.edu	37	5	121787002	121787002	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:121787002G>A	uc003ksw.1	+	10	2666	c.2460G>A	c.(2458-2460)GAG>GAA	p.E820E	SNCAIP_uc011cwl.1_Silent_p.E378E|SNCAIP_uc003ksx.1_Silent_p.E867E|SNCAIP_uc003ksy.1_Silent_p.E454E|SNCAIP_uc003ksz.1_Silent_p.E454E|SNCAIP_uc010jcu.2_Silent_p.E416E|SNCAIP_uc011cwm.1_Silent_p.E454E|SNCAIP_uc003kta.1_Silent_p.E452E|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Silent_p.E514E|SNCAIP_uc010jcx.1_Silent_p.E760E|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Silent_p.E336E	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	820					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		CCTTTGAGGAGCCTGTGGTGC	0.502													7	61					0	0	0.000157383	0	0
GRAMD3	65983	broad.mit.edu	37	5	125819252	125819252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:125819252C>T	uc003ktu.2	+	9	1263	c.833C>T	c.(832-834)TCT>TTT	p.S278F	GRAMD3_uc011cwt.1_Missense_Mutation_p.S293F|GRAMD3_uc011cwv.1_Missense_Mutation_p.S286F|GRAMD3_uc011cww.1_Missense_Mutation_p.S174F|GRAMD3_uc011cwx.1_RNA|GRAMD3_uc011cwy.1_Missense_Mutation_p.S169F|GRAMD3_uc011cwz.1_Missense_Mutation_p.S262F|GRAMD3_uc011cwu.1_Missense_Mutation_p.S262F	NM_023927	NP_076416	Q96HH9	GRAM3_HUMAN	GRAM domain containing 3 isoform 2	278										central_nervous_system(1)	1		Prostate(80;0.0928)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0401)|OV - Ovarian serous cystadenocarcinoma(64;0.0604)|all cancers(49;0.108)		ACTCCTGAATCTGAGAACTCT	0.373													9	45					0	0	0.000442599	0	0
MEGF10	84466	broad.mit.edu	37	5	126667076	126667076	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:126667076C>T	uc003kuh.3	+	3	438	c.76C>T	c.(76-78)CTG>TTG	p.L26L	MEGF10_uc010jdc.1_Silent_p.L26L|MEGF10_uc010jdd.1_Silent_p.L26L|MEGF10_uc003kui.3_Silent_p.L26L	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	26	Extracellular (Potential).|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		AGCATCACCTCTGAATCTTGA	0.388													7	93					0	0	0.000442599	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128863489	128863489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:128863489C>T	uc003kvb.1	+	5	1117	c.1117C>T	c.(1117-1119)CGT>TGT	p.R373C	ADAMTS19_uc003kvc.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	373	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GGTCAATCTTCGTGTGATAAA	0.294													17	101					0	0	0.000958276	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128958002	128958002	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:128958002C>T	uc003kvb.1	+	10	1713	c.1713C>T	c.(1711-1713)ATC>ATT	p.I571I	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	571	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		AATGCCAGATCCTTTTTGGGC	0.448													5	31					0	0	0.00116845	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128990081	128990081	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:128990081T>C	uc003kvb.1	+	14	2241	c.2241T>C	c.(2239-2241)TCT>TCC	p.S747S	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	747	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		ATGGAACTTCTTGTGGCTATC	0.378													12	57					0	0	0.00244969	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129015484	129015484	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:129015484T>A	uc003kvb.1	+	17	2516	c.2516T>A	c.(2515-2517)ATT>AAT	p.I839N	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	839	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		AAACAGTCTATTAATAGTGAC	0.388													25	87					0	0	0.001512	0	0
RAPGEF6	51735	broad.mit.edu	37	5	130791572	130791572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:130791572G>A	uc003kvn.1	-	20	3204	c.2998C>T	c.(2998-3000)CTT>TTT	p.L1000F	RAPGEF6_uc003kvp.1_Missense_Mutation_p.L1050F|RAPGEF6_uc003kvo.1_Missense_Mutation_p.L1005F|RAPGEF6_uc010jdi.1_Missense_Mutation_p.L1000F|RAPGEF6_uc010jdj.1_Missense_Mutation_p.L1000F|RAPGEF6_uc003kvq.2_Missense_Mutation_p.L717F|RAPGEF6_uc003kvr.2_Missense_Mutation_p.L1000F|RAPGEF6_uc011cxe.1_RNA	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1000	Ras-GEF.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		TGACTACTAAGAATATTTCTA	0.333													20	103					0	0	0.000586117	0	0
CATSPER3	347732	broad.mit.edu	37	5	134346174	134346174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:134346174G>A	uc003lag.2	+	7	1116	c.1048G>A	c.(1048-1050)GAT>AAT	p.D350N		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	350					cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ACCCTTCATCGATATCTACTT	0.512													6	59					0	0	0.00116845	0	0
FBXL21	26223	broad.mit.edu	37	5	135276722	135276722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:135276722C>T	uc010jec.1	+	5	688	c.667C>T	c.(667-669)CTT>TTT	p.L223F	FBXL21_uc003lbc.2_RNA	NM_012159	NP_036291	Q9UKT6	FXL21_HUMAN	F-box and leucine-rich repeat protein 21	223	LRR 3.				rhythmic process	ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CACAGGAATTCTTTGTGTAGC	0.318													20	158					0	0	0.00047179	0	0
TRPC7	57113	broad.mit.edu	37	5	135587384	135587384	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:135587384G>C	uc003lbn.1	-	5	1532	c.1529C>G	c.(1528-1530)ACG>AGG	p.T510R	TRPC7_uc010jef.1_Missense_Mutation_p.T447R|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.T441R|TRPC7_uc010jei.1_Missense_Mutation_p.T386R|TRPC7_uc010jej.1_Missense_Mutation_p.T62R	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	511	Extracellular (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			ATTGTGCAGCGTGTCGTCCTG	0.602													4	26					0	0	0.000602214	0	0
GFRA3	2676	broad.mit.edu	37	5	137593443	137593443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:137593443C>T	uc003lcn.2	-	4	810	c.670G>A	c.(670-672)GAC>AAC	p.D224N	GFRA3_uc003lco.2_Missense_Mutation_p.D193N	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	224					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CAGCCCCGGTCGTTGGGGGCA	0.716													5	22					0	0	0.000602214	0	0
TMEM173	340061	broad.mit.edu	37	5	138858010	138858010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:138858010G>A	uc003lep.2	-	6	855	c.604C>T	c.(604-606)CTC>TTC	p.L202F		NM_198282	NP_938023	Q86WV6	TM173_HUMAN	transmembrane protein 173	202	Cytoplasmic (Potential).				activation of innate immune response|apoptosis|cellular response to exogenous dsRNA|defense response to virus|innate immune response|interferon-beta production|positive regulation of defense response to virus by host|positive regulation of protein binding|positive regulation of protein import into nucleus, translocation|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter	endoplasmic reticulum membrane|integral to membrane|mitochondrial outer membrane|perinuclear region of cytoplasm|plasma membrane	protein homodimerization activity|protein kinase binding|transcription factor binding			upper_aerodigestive_tract(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TCCAATGGGAGGAGAATATAC	0.562													10	97					0	0	0.000978159	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139908062	139908062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:139908062C>T	uc003lfs.1	+	29	5655	c.5531C>T	c.(5530-5532)CCA>CTA	p.P1844L	ANKHD1_uc003lfr.2_Missense_Mutation_p.P1844L|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.P583L|ANKHD1_uc003lfw.2_Missense_Mutation_p.P482L|ANKHD1_uc010jfl.2_Missense_Mutation_p.P279L|ANKHD1-EIF4EBP3_uc003lfx.1_5'UTR	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1844						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTTCTTTCCCAGTTTCTCTA	0.453													10	99					0	0	0.00185496	0	0
PCDHA2	56146	broad.mit.edu	37	5	140174900	140174900	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140174900C>T	uc003lhd.2	+	1	457	c.351C>T	c.(349-351)TTC>TTT	p.F117F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.F117F|PCDHA2_uc011czy.1_Silent_p.F117F	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	117	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTTTTCCATGTGGAAG	0.532													16	154					0	0	0.000566183	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188444	140188444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140188444G>A	uc003lhi.2	+	1	1773	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.E558K|PCDHA4_uc011daa.1_Missense_Mutation_p.E558K	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	558	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGTGCTGGACGAAAACGACAA	0.667													14	54					0	0	0.000566183	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201371	140201371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140201371C>T	uc003lhl.2	+	1	11	c.11C>T	c.(10-12)TCC>TTC	p.S4F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.S4F|PCDHA5_uc003lhj.1_Missense_Mutation_p.S4F	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	4					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGGTATATTCCCGGAGAGGA	0.458													6	82					0	0	0.00198382	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201568	140201568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140201568C>T	uc003lhl.2	+	1	208	c.208C>T	c.(208-210)CGC>TGC	p.R70C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.R70C|PCDHA5_uc003lhj.1_Missense_Mutation_p.R70C	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	70	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding	p.Q49fs*50(1)		ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCCAAGGGCCGCGGGGACCT	0.637													23	99					0	0	0.00047179	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207721	140207721	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140207721C>T	uc003lho.2	+	1	72	c.45C>T	c.(43-45)CTC>CTT	p.L15L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.L15L|PCDHA6_uc011dab.1_Silent_p.L15L	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	15					homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGTCTGCTCCTCCCGCTTC	0.532													11	102					0	0	0.000673444	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208316	140208316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140208316G>A	uc003lho.2	+	1	667	c.640G>A	c.(640-642)GCC>ACC	p.A214T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.A214T|PCDHA6_uc011dab.1_Missense_Mutation_p.A214T	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	214	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCCTGACAGCCACAGATGG	0.443													7	46					0	0	0.000157383	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214166	140214167	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140214166_140214167GG>AA	uc003lhq.2	+	1	198_199	c.198_199GG>AA	c.(196-201)GCGGTG>GCAATG	p.V67M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.V67M	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	67	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTCCGGGCGGTGTGCAAATT	0.624													17	115					0	0	6.4e-05	0	0
PCDHA8	56140	broad.mit.edu	37	5	140221176	140221176	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140221176C>T	uc003lhs.2	+	1	270	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.I90I	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGCGAGG	0.612													25	137					0	0	0.0024448	0	0
PCDHA8	56140	broad.mit.edu	37	5	140223219	140223219	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140223219C>T	uc003lhs.2	+	1	2313	c.2313C>T	c.(2311-2313)GCC>GCT	p.A771A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Silent_p.A771A	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	771	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCTCATGGCCTTCAGCCCCT	0.532													5	33					0	0	0.000602214	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249076	140249076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140249076C>T	uc003lia.2	+	1	1246	c.388C>T	c.(388-390)CCG>TCG	p.P130S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.P130S	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	130	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAACGACAACCCGCCGGTGTT	0.552													27	115					0	0	0.000878237	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256735	140256735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140256735G>A	uc003lic.2	+	1	1805	c.1678G>A	c.(1678-1680)GAC>AAC	p.D560N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.D560N	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	560	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACGAGAACGACAACGCGCC	0.701													10	122					0	0	0.000978159	0	0
PCDHA13	56136	broad.mit.edu	37	5	140264186	140264186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140264186C>T	uc003lif.2	+	1	2333	c.2333C>T	c.(2332-2334)CCT>CTT	p.P778L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.P778L|PCDHA13_uc003lid.2_Missense_Mutation_p.P778L	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	778	Cytoplasmic (Potential).|6 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCCTTCCTCCTTGTCTGGGT	0.537													5	37					0	0	0.00116845	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475394	140475394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140475394G>A	uc003lil.2	+	1	1158	c.1020G>A	c.(1018-1020)ATG>ATA	p.M340I	PCDHB2_uc003lim.1_Missense_Mutation_p.M1I	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	340	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCAAGTGATGGATTTGAATG	0.438													6	59					0	0	0.00116845	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480247	140480247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140480247G>A	uc003lio.2	+	1	14	c.14G>A	c.(13-15)GGA>GAA	p.G5E	uc003lin.2_RNA	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	5					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGGCGGGAGGAGAGCGATTT	0.522													9	63					0	0	0.000673444	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480965	140480965	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140480965G>A	uc003lio.2	+	1	732	c.732G>A	c.(730-732)CAG>CAA	p.Q244Q	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	244	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATTTGCACAGCCGCTCTATG	0.507													23	102					0	0	0.000586117	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503929	140503929	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140503929G>A	uc003lip.1	+	1	2349	c.2349G>A	c.(2347-2349)AAG>AAA	p.K783K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	783	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGAAGTTAAGGAAAACCCCA	0.448													6	60					0	0	0.000157383	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515917	140515917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140515917C>T	uc003liq.2	+	1	1118	c.901C>T	c.(901-903)CGC>TGC	p.R301C		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	301	Cadherin 3.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGCAGAAATTCGCCTGAAAAG	0.438													16	127					0	0	0.00074312	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531512	140531512	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140531512C>T	uc003lir.2	+	1	1674	c.1674C>T	c.(1672-1674)TTC>TTT	p.F558F	PCDHB6_uc011dah.1_Silent_p.F422F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	558	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTCGCCCTTCGTGTTGTACC	0.716													9	54					0	0	0.000274275	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553675	140553675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140553675C>T	uc003lit.2	+	1	1433	c.1259C>T	c.(1258-1260)ACC>ATC	p.T420I		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	420	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TACAACATCACCATCACCGTC	0.517													8	46					0	0	0.000442599	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554780	140554780	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140554780G>A	uc003lit.2	+	1	2538	c.2364G>A	c.(2362-2364)CAG>CAA	p.Q788Q	PCDHB8_uc011dai.1_5'Flank	NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	788	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCATTTCAGAATAATTTGG	0.438													9	138					0	0	0.000673444	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558336	140558336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140558336C>T	uc011dai.1	+	1	907	c.721C>T	c.(721-723)CCT>TCT	p.P241S	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	241	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGATAATGCCCCTGAATTTGA	0.502													17	786					0	0	0.00074312	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558898	140558898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140558898G>A	uc011dai.1	+	1	1469	c.1283G>A	c.(1282-1284)GGG>GAG	p.G428E	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTGACTTAGGGACACCCAGG	0.517													9	328					0	0	0.000274275	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558979	140558979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140558979C>T	uc011dai.1	+	1	1550	c.1364C>T	c.(1363-1365)ACC>ATC	p.T455I	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	455	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCACCCAAACCTCCTACACC	0.607													11	395					0	0	0.000422831	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559123	140559124	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140559123_140559124CC>TT	uc011dai.1	+	1	1694_1695	c.1508_1509CC>TT	c.(1507-1509)TCC>TTT	p.S503F	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	503	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCCTCGCCTCCCTGGTCTCCA	0.668													15	429					0	0	6.4e-05	0	0
PCDHB8	56128	broad.mit.edu	37	5	140559171	140559171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140559171C>T	uc011dai.1	+	1	1742	c.1556C>T	c.(1555-1557)TCG>TTG	p.S519L	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	519	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCTCAGGTCGCTGGACTAC	0.687													15	428					0	0	0.000422831	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563942	140563942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140563942C>T	uc003liv.2	+	1	2963	c.1808C>T	c.(1807-1809)TCG>TTG	p.S603L	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	603	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCTGGCTGTCGTACCAGCTG	0.721													10	54					0	0	0.00185496	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568150	140568150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140568150C>T	uc003liw.1	+	3	1259	c.1259C>T	c.(1258-1260)ACC>ATC	p.T420I		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	420	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TACAACATCACCATCACCGTC	0.498													11	61					0	0	0.000978159	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568496	140568496	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140568496C>T	uc003liw.1	+	3	1605	c.1605C>T	c.(1603-1605)GAC>GAT	p.D535D		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	535	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGCCTCAGACCGCGGCTCCC	0.662													10	46					0	0	0.000442599	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625498	140625498	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140625498C>T	uc003lje.2	+	1	352	c.352C>T	c.(352-354)CGA>TGA	p.R118*		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	118	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAAGTATTTCGAGCTGAACT	0.433													12	69					0	0	0.00244969	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724790	140724790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140724790C>T	uc003ljm.1	+	1	1190	c.1190C>T	c.(1189-1191)TCA>TTA	p.S397L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.S157L|PCDHGA3_uc011dap.1_Missense_Mutation_p.S397L	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	397	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTAGAAAAATCAATAGATCAA	0.448													9	77					0	0	0.000274275	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724888	140724888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140724888C>T	uc003ljm.1	+	1	1288	c.1288C>T	c.(1288-1290)CCG>TCG	p.P430S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Missense_Mutation_p.P190S|PCDHGA3_uc011dap.1_Missense_Mutation_p.P430S	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	430	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGGGGAAGCCCGCCACTGTC	0.478													5	61					0	0	0.00116845	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731171	140731171	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140731171C>T	uc003ljo.1	+	1	1344	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.F448F	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	448	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCTGTTTTCCATCAGGCCT	0.562													6	43					0	0	0.00116845	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736083	140736083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140736083C>T	uc003ljq.1	+	1	1316	c.1316C>T	c.(1315-1317)TCA>TTA	p.S439L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.S439L	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	439	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTCATATTTCACTGCAAGTG	0.463													9	52					0	0	0.000442599	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736304	140736304	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140736304A>C	uc003ljq.1	+	1	1537	c.1537A>C	c.(1537-1539)ATC>CTC	p.I513L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.I513L	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	513	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAATACAGGGATCCTATATGC	0.522													16	100					0	0	0.000308642	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745513	140745513	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140745513A>G	uc003lju.1	+	1	1616	c.1616A>G	c.(1615-1617)AAC>AGC	p.N539S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Missense_Mutation_p.N539S	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	539	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACAGTGGGAACCCTCCACTT	0.557													12	136					0	0	0.000422831	0	0
PCDHGB4	8641	broad.mit.edu	37	5	140768738	140768738	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140768738C>T	uc003lkc.1	+	1	1287	c.1287C>T	c.(1285-1287)CCC>CCT	p.P429P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc011dav.1_Silent_p.P429P	NM_003736	NP_003727	Q9UN71	PCDGG_HUMAN	protocadherin gamma subfamily B, 4 isoform 1	429	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAAGCCTCCCCTCTCCTCCA	0.488													23	122					0	0	0.000586117	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772815	140772815	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140772815C>T	uc003lkd.1	+	1	1333	c.435C>T	c.(433-435)ATC>ATT	p.I145I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.I145I	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	145	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTAACGAAATCGCGGTTCCTG	0.438													9	62					0	0	0.000442599	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140778464	140778464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140778464C>T	uc003lkf.1	+	1	770	c.770C>T	c.(769-771)CCA>CTA	p.P257L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.P257L	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	257	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACGTGCCACCAGGCACCACT	0.522													17	70					0	0	0.000958276	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784346	140784346	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140784346C>T	uc003lkh.1	+	1	1827	c.1827C>T	c.(1825-1827)TTC>TTT	p.F609F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Silent_p.F609F	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	609	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCGCCTATTCAAGGCCAGTG	0.612													9	35					0	0	0.000673444	0	0
PCDHGB7	56099	broad.mit.edu	37	5	140798397	140798397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:140798397G>A	uc003lkn.1	+	1	1116	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkm.2_Missense_Mutation_p.R324Q|PCDHGA11_uc003lko.1_5'Flank|PCDHGA11_uc003lkp.1_5'Flank|PCDHGA11_uc003lkq.1_5'Flank	NM_018927	NP_061750	Q9Y5F8	PCDGJ_HUMAN	protocadherin gamma subfamily B, 7 isoform 1	324	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCAAAAGACCGAGGATCTCTC	0.388													8	31					0	0	0.000157383	0	0
ARAP3	64411	broad.mit.edu	37	5	141059648	141059648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:141059648G>A	uc003llm.2	-	2	484	c.406C>T	c.(406-408)CCT>TCT	p.P136S	ARAP3_uc003lln.2_Missense_Mutation_p.P58S|ARAP3_uc003llo.1_Missense_Mutation_p.P136S	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	136	Pro-rich.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						GGGAGAGGAGGAGGCCTTGGG	0.617													27	132					0	0	0.00058488	0	0
PCDH1	5097	broad.mit.edu	37	5	141243202	141243202	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:141243202G>A	uc003llq.2	-	3	2811	c.2694C>T	c.(2692-2694)GCC>GCT	p.A898A	PCDH1_uc003llp.2_Silent_p.A898A|PCDH1_uc011dbf.1_Silent_p.A876A	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	898	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TGGGCTTGGGGGCATACAGGT	0.587													6	76					0	0	0.00198382	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393427	145393427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:145393427G>A	uc003lnt.2	+	5	1100	c.862G>A	c.(862-864)GGC>AGC	p.G288S	SH3RF2_uc011dbl.1_Missense_Mutation_p.G288S	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	288							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTCCGTAGGGGCCCAGGGTC	0.557													6	59					0	0	0.000157383	0	0
SH3RF2	153769	broad.mit.edu	37	5	145442053	145442053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:145442053C>T	uc003lnt.2	+	10	2217	c.1979C>T	c.(1978-1980)CCC>CTC	p.P660L	SH3RF2_uc011dbl.1_Missense_Mutation_p.P660L|SH3RF2_uc003lnu.2_Missense_Mutation_p.P151L|SH3RF2_uc011dbn.1_Missense_Mutation_p.P151L|SH3RF2_uc011dbo.1_Missense_Mutation_p.P117L	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	660							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACCTCCCATCCCACCTCCGGA	0.552													10	54					0	0	0.000442599	0	0
SH3RF2	153769	broad.mit.edu	37	5	145442097	145442097	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:145442097C>T	uc003lnt.2	+	10	2261	c.2023C>T	c.(2023-2025)CAG>TAG	p.Q675*	SH3RF2_uc011dbl.1_Nonsense_Mutation_p.Q675*|SH3RF2_uc003lnu.2_Nonsense_Mutation_p.Q166*|SH3RF2_uc011dbn.1_Nonsense_Mutation_p.Q166*|SH3RF2_uc011dbo.1_Nonsense_Mutation_p.Q132*	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	675							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAAGGCGTCCCAGCCTGAAGC	0.587													7	44					0	0	0.000157383	0	0
LARS	51520	broad.mit.edu	37	5	145524069	145524069	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:145524069T>G	uc003lnx.1	-	17	1859	c.1621A>C	c.(1621-1623)AAA>CAA	p.K541Q	LARS_uc011dbq.1_Missense_Mutation_p.K495Q|LARS_uc011dbr.1_Missense_Mutation_p.K487Q|LARS_uc011dbs.1_Missense_Mutation_p.K514Q	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	541					leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	GATGTCTGTTTCTTCCAATTC	0.373													14	92					0	0	0.000566183	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040636	147040636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:147040636C>T	uc003loq.1	-	3	884	c.502G>A	c.(502-504)GAG>AAG	p.E168K	JAKMIP2_uc011dbx.1_Missense_Mutation_p.E126K|JAKMIP2_uc003lor.1_Missense_Mutation_p.E168K|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Missense_Mutation_p.E168K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	168	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCAGAGCCTCGTCCACCTGC	0.532													13	170					0	0	0.000308642	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147040889	147040889	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:147040889C>T	uc003loq.1	-	3	631	c.249G>A	c.(247-249)AAG>AAA	p.K83K	JAKMIP2_uc011dbx.1_Silent_p.K41K|JAKMIP2_uc003lor.1_Silent_p.K83K|uc003lop.1_3'UTR|JAKMIP2_uc010jgo.1_Silent_p.K83K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	83	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGCAGCTCCTTCATCTTCT	0.532													10	127					0	0	0.000673444	0	0
ADRB2	154	broad.mit.edu	37	5	148207326	148207326	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:148207326T>G	uc003lpr.1	+	1	1171	c.932T>G	c.(931-933)CTA>CGA	p.L311R	SH3TC2_uc003lpp.1_Intron	NM_000024	NP_000015	P07550	ADRB2_HUMAN	adrenergic, beta-2-, receptor, surface	311	Helical; Name=7.				activation of transmembrane receptor protein tyrosine kinase activity|desensitization of G-protein coupled receptor protein signaling pathway by arrestin|endosome to lysosome transport|positive regulation of MAPKKK cascade|receptor-mediated endocytosis	endosome|integral to plasma membrane|lysosome|receptor complex	beta2-adrenergic receptor activity|norepinephrine binding|potassium channel regulator activity|protein homodimerization activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Alprenolol(DB00866)|Arformoterol(DB01274)|Bambuterol(DB01408)|Bisoprolol(DB00612)|Bitolterol(DB00901)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Clenbuterol(DB01407)|Desipramine(DB01151)|Epinephrine(DB00668)|Fenoterol(DB01288)|Formoterol(DB00983)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Nadolol(DB01203)|Norepinephrine(DB00368)|Orciprenaline(DB00816)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Pirbuterol(DB01291)|Procaterol(DB01366)|Propranolol(DB00571)|Pseudoephedrine(DB00852)|Ritodrine(DB00867)|Salbutamol(DB01001)|Salmeterol(DB00938)|Terbutaline(DB00871)|Timolol(DB00373)	TACATCCTCCTAAATTGGATA	0.488													11	91					0	0	0.000673444	0	0
PDE6A	5145	broad.mit.edu	37	5	149323966	149323966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:149323966C>T	uc003lrg.3	-	1	391	c.271G>A	c.(271-273)GCA>ACA	p.A91T		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	91	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			ATGCGGTCTGCCTGCAGGAGG	0.517													8	46					0	0	0.000442599	0	0
PDE6A	5145	broad.mit.edu	37	5	149324045	149324045	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:149324045G>A	uc003lrg.3	-	1	312	c.192C>T	c.(190-192)CTC>CTT	p.L64L		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	64					cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			AGTCCCGCAGGAGATCAAAGA	0.532													6	40					0	0	0.00198382	0	0
FAT2	2196	broad.mit.edu	37	5	150923884	150923884	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:150923884G>A	uc003lue.3	-	9	6817	c.6804C>T	c.(6802-6804)AAC>AAT	p.N2268N	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2268	Cadherin 19.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AAGTGGGAGGGTTATCATTGA	0.502													10	47					0	0	0.000673444	0	0
GLRA1	2741	broad.mit.edu	37	5	151231166	151231166	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:151231166C>T	uc003lut.2	-	7	985	c.698_splice	c.e7-1	p.G233_splice	GLRA1_uc003lur.2_Splice_Site_p.G233_splice|GLRA1_uc003lus.2_Splice_Site_p.G150_splice	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor						muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GTGAATTTACCTGCAAGAAAT	0.308													6	34					0	0	0.00116845	0	0
NMUR2	56923	broad.mit.edu	37	5	151784282	151784282	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:151784282G>A	uc003luv.2	-	1	559	c.393C>T	c.(391-393)TTC>TTT	p.F131F		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	131	Helical; Name=3; (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GGATGGAGGCGAAGCACACGG	0.627													8	42					0	0	0.000673444	0	0
NMUR2	56923	broad.mit.edu	37	5	151784348	151784348	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:151784348G>A	uc003luv.2	-	1	493	c.327C>T	c.(325-327)AAC>AAT	p.N109N		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	109	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			AGAAAGGGTAGTTGCGCCACA	0.592													14	51					0	0	0.00185496	0	0
HAVCR1	26762	broad.mit.edu	37	5	156469690	156469691	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:156469690_156469691CC>AA	uc010jij.1	-	6	969_970	c.784_785GG>TT	c.(784-786)GGG>TTG	p.G262L	HAVCR1_uc011ddl.1_Missense_Mutation_p.G93L|HAVCR1_uc003lwi.2_Missense_Mutation_p.G262L	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	257	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGTGTCATTCCCATCTACTCAA	0.347													18	508					0	0	6.4e-05	0	0
HAVCR1	26762	broad.mit.edu	37	5	156482224	156482224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:156482224C>T	uc010jij.1	-	3	552	c.367G>A	c.(367-369)GAG>AAG	p.E123K	HAVCR1_uc011ddl.1_5'Flank|HAVCR1_uc003lwi.2_Missense_Mutation_p.E123K|HAVCR1_uc011ddm.1_Missense_Mutation_p.E123K	NM_001099414	NP_001092884	Q96D42	HAVR1_HUMAN	hepatitis A virus cellular receptor 1	123	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane	receptor activity			ovary(1)|skin(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGCACAATCTCCAATGATACG	0.378													15	230					0	0	0.00244969	0	0
HAVCR2	84868	broad.mit.edu	37	5	156533856	156533856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:156533856G>A	uc003lwk.1	-	2	320	c.176C>T	c.(175-177)CCT>CTT	p.P59L	HAVCR2_uc003lwl.2_Missense_Mutation_p.P59L	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	59	Ig-like V-type.|Extracellular (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTCAAACACAGGACAGGCTCC	0.547													58	316					0	0	0.000781405	0	0
ITK	3702	broad.mit.edu	37	5	156649894	156649894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:156649894G>A	uc003lwo.1	+	6	599	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	173	SH3.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGAACCTGAAGAAACTGTGGT	0.488			T	SYK	peripheral T-cell lymphoma								19	227					0	0	0.00188189	0	0
ITK	3702	broad.mit.edu	37	5	156649985	156649985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:156649985G>A	uc003lwo.1	+	6	690	c.608G>A	c.(607-609)AGT>AAT	p.S203N		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	203	SH3.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CTGCTGGACAGTTCTGAGATT	0.493			T	SYK	peripheral T-cell lymphoma								26	249					0	0	0.00209593	0	0
IL12B	3593	broad.mit.edu	37	5	158743783	158743783	+	Silent	SNP	G	A	A	rs150902695		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:158743783G>A	uc003lxr.1	-	7	939	c.897C>T	c.(895-897)ATC>ATT	p.I299I		NM_002187	NP_002178	P29460	IL12B_HUMAN	interleukin 12B precursor	299	Fibronectin type-III.				cell cycle arrest|cell migration|defense response to Gram-negative bacterium|interferon-gamma biosynthetic process|natural killer cell activation|negative regulation of interleukin-10 production|negative regulation of interleukin-17 production|negative regulation of smooth muscle cell proliferation|positive regulation of activated T cell proliferation|positive regulation of activation of JAK2 kinase activity|positive regulation of cell adhesion|positive regulation of defense response to virus by host|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-17 production|positive regulation of memory T cell differentiation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|positive regulation of natural killer cell proliferation|positive regulation of NF-kappaB import into nucleus|positive regulation of NK T cell activation|positive regulation of NK T cell proliferation|positive regulation of osteoclast differentiation|positive regulation of smooth muscle cell apoptosis|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat4 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|regulation of tyrosine phosphorylation of Stat1 protein|response to UV-B|sexual reproduction|T-helper 1 type immune response|T-helper cell differentiation	interleukin-12 complex|interleukin-23 complex|membrane	cytokine activity|cytokine receptor activity|interleukin-12 receptor binding|protein heterodimerization activity				0	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TTTTGCGGCAGATGACCGTGG	0.537											OREG0016989	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	51					0	0	0.000157383	0	0
ATP10B	23120	broad.mit.edu	37	5	160033961	160033961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:160033961C>T	uc003lym.1	-	19	3818	c.2971G>A	c.(2971-2973)GTT>ATT	p.V991I	ATP10B_uc010jit.1_Missense_Mutation_p.V308I	NM_025153	NP_079429	O94823	AT10B_HUMAN	ATPase, class V, type 10B	991	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0377)|all_neural(177;0.121)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCTTCTGGAACCACAGCTTCT	0.478													11	73					0	0	0.00185496	0	0
GABRG2	2566	broad.mit.edu	37	5	161576178	161576178	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:161576178C>T	uc003lyz.3	+	8	1345	c.987C>T	c.(985-987)GTC>GTT	p.V329V	GABRG2_uc010jjc.2_Silent_p.V369V|GABRG2_uc003lyy.3_Silent_p.V329V|GABRG2_uc011dej.1_Silent_p.V234V	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	329					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		TCCCCAAGGTCTCCTATGTCA	0.468													12	42					0	0	0.00136819	0	0
GABRG2	2566	broad.mit.edu	37	5	161580306	161580306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:161580306C>T	uc003lyz.3	+	9	1694	c.1336C>T	c.(1336-1338)CGG>TGG	p.R446W	GABRG2_uc010jjc.2_Missense_Mutation_p.R494W|GABRG2_uc003lyy.3_Missense_Mutation_p.R454W|GABRG2_uc011dej.1_Missense_Mutation_p.R351W	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	446	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		CTCCTATGCTCGGATCTTCTT	0.463													12	97					0	0	0.000308642	0	0
SLIT3	6586	broad.mit.edu	37	5	168176556	168176556	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:168176556C>T	uc003mab.2	-	19	2478	c.2058G>A	c.(2056-2058)GGG>GGA	p.G686G	SLIT3_uc010jjg.2_Silent_p.G686G	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	686	LRRCT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ACCTAGGGTTCCCACTGACGA	0.552													12	89					0	0	0.00185496	0	0
DOCK2	1794	broad.mit.edu	37	5	169143223	169143223	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:169143223C>T	uc003maf.2	+	20	2028	c.1948C>T	c.(1948-1950)CAG>TAG	p.Q650*	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Nonsense_Mutation_p.Q142*	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	650	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCAGTTTCTCCAGGATACTCT	0.333													7	61					0	0	0.000274275	0	0
DOCK2	1794	broad.mit.edu	37	5	169494644	169494644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:169494644G>A	uc003maf.2	+	45	4678	c.4598G>A	c.(4597-4599)GGG>GAG	p.G1533E	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.G1025E|DOCK2_uc003mah.2_Missense_Mutation_p.G89E	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1533	DHR-2.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTCCTGAACGGGATTGTGGAC	0.532													13	59					0	0	0.00244969	0	0
RANBP17	64901	broad.mit.edu	37	5	170720921	170720921	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:170720921A>T	uc003mba.2	+	26	2994	c.2978A>T	c.(2977-2979)GAA>GTA	p.E993V	RANBP17_uc003mbb.2_Missense_Mutation_p.E318V|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	993					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ATTGTCTTTGAAGACTGTCGG	0.498			T	TRD@	ALL								13	240					0	0	0.000958276	0	0
DRD1	1812	broad.mit.edu	37	5	174869097	174869097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:174869097C>T	uc003mcz.2	-	2	1951	c.1006G>A	c.(1006-1008)GAT>AAT	p.D336N		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	336	Helical; Name=7; (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	TTCCGAAAATCAGCATTAAAG	0.468													13	77					0	0	0.00136819	0	0
NSD1	64324	broad.mit.edu	37	5	176638324	176638325	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:176638324_176638325CC>TT	uc003mfr.3	+	5	3062_3063	c.2924_2925CC>TT	c.(2923-2925)TCC>TTT	p.S975F	NSD1_uc003mft.3_Missense_Mutation_p.S706F|NSD1_uc003mfs.1_Missense_Mutation_p.S872F|NSD1_uc011dfx.1_Missense_Mutation_p.S623F	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	975					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		ACTCAGAACTCCGCCAATCCTA	0.515			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			6	37					0	0	6.4e-05	0	0
AGXT2L2	85007	broad.mit.edu	37	5	177658419	177658419	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:177658419G>C	uc003miz.2	-	2	417	c.165C>G	c.(163-165)AGC>AGG	p.S55R	AGXT2L2_uc003mjc.2_Missense_Mutation_p.S14R|AGXT2L2_uc003mja.2_RNA|AGXT2L2_uc003mjb.2_5'UTR	NM_153373	NP_699204	Q8IUZ5	AT2L2_HUMAN	alanine-glyoxylate aminotransferase 2-like 2	55						mitochondrion	pyridoxal phosphate binding|transaminase activity			pancreas(1)	1	all_cancers(89;0.00185)|Renal(175;0.000269)|Lung NSC(126;0.00858)|all_lung(126;0.0139)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.181)|all cancers(165;0.235)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	GCGCCACATTGCTGATGCAAT	0.557													3	103					0	0	0.000602214	0	0
COL23A1	91522	broad.mit.edu	37	5	177694308	177694308	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:177694308C>T	uc003mje.2	-	8	880	c.522G>A	c.(520-522)CGG>CGA	p.R174R	COL23A1_uc010jkt.2_Missense_Mutation_p.G22E	NM_173465	NP_775736	Q86Y22	CONA1_HUMAN	collagen, type XXIII, alpha 1	174	Extracellular (Potential).|Collagen-like 1.|Gly-rich.					collagen|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)|skin(1)	2	all_cancers(89;0.00188)|Renal(175;0.000159)|Lung NSC(126;0.00814)|all_lung(126;0.0129)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	OV - Ovarian serous cystadenocarcinoma(192;0.153)|all cancers(165;0.172)		TGGTTCTTACCCGGGGGCCAA	0.468													8	19					0	0	0.000673444	0	0
BTNL8	79908	broad.mit.edu	37	5	180377043	180377043	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr5:180377043G>A	uc003mmp.2	+	8	1236	c.1002G>A	c.(1000-1002)CAG>CAA	p.Q334Q	BTNL8_uc003mmq.2_3'UTR|BTNL8_uc011dhg.1_Silent_p.Q209Q|BTNL8_uc010jll.2_3'UTR|BTNL8_uc010jlm.2_Silent_p.Q218Q|BTNL8_uc011dhh.1_Silent_p.Q150Q	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	334	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGGCTTCTCAGAGTTTCCAAG	0.512													21	29					0	0	0.00047179	0	0
HUS1B	135458	broad.mit.edu	37	6	656326	656326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:656326G>A	uc003mtg.2	-	1	639	c.619C>T	c.(619-621)CTT>TTT	p.L207F	EXOC2_uc003mtd.2_Intron|EXOC2_uc003mte.2_Intron|EXOC2_uc011dho.1_Intron	NM_148959	NP_683762	Q8NHY5	HUS1B_HUMAN	HUS1 checkpoint protein B	207											0	Ovarian(93;0.0733)	Breast(5;0.00139)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.041)|BRCA - Breast invasive adenocarcinoma(62;0.0965)		GGGTTTCCAAGATTTTTAAAA	0.517													12	134					0	0	0.00185496	0	0
MYLK4	340156	broad.mit.edu	37	6	2685801	2685801	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:2685801G>A	uc003mty.3	-	5	648	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	117	ATP (By similarity).|Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				GAACCTGGCCGAAACGCCCTC	0.582													7	90					0	0	0.000274275	0	0
C6orf146	222826	broad.mit.edu	37	6	4069785	4069785	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:4069785C>T	uc003mvx.2	-	7	1012	c.672G>A	c.(670-672)CTG>CTA	p.L224L	C6orf146_uc010jnq.1_Intron|C6orf146_uc003mvy.2_Silent_p.L161L	NM_173563	NP_775834	Q8IXS0	CF146_HUMAN	hypothetical protein LOC222826	224										ovary(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				GCTTCAAGTTCAGGTCCACCT	0.368													15	172					0	0	0.00074312	0	0
F13A1	2162	broad.mit.edu	37	6	6305608	6305608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:6305608G>A	uc003mwv.2	-	3	418	c.295C>T	c.(295-297)CTC>TTC	p.L99F	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	99					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	ACCCTGAAGAGATCCCTTCTG	0.493													12	43					0	0	0.00244969	0	0
ELOVL2	54898	broad.mit.edu	37	6	10995380	10995380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:10995380G>A	uc003mzp.3	-	5	526	c.365C>T	c.(364-366)TCC>TTC	p.S122F		NM_017770	NP_060240	Q9NXB9	ELOV2_HUMAN	elongation of very long chain fatty acids-like	122					fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Breast(50;0.0418)|Ovarian(93;0.0919)	all_hematologic(90;0.117)	Epithelial(50;0.176)			TACTGATTTGGAGAAATAGTA	0.413													20	88					0	0	0.00278032	0	0
HIVEP1	3096	broad.mit.edu	37	6	12124188	12124188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:12124188C>T	uc003nac.2	+	4	4339	c.4160C>T	c.(4159-4161)TCA>TTA	p.S1387L	HIVEP1_uc011diq.1_RNA	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	1387					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				AGAAGCAAATCATTCGATTGT	0.498													11	94					0	0	0.000978159	0	0
PHACTR1	221692	broad.mit.edu	37	6	12749886	12749886	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:12749886G>A	uc010jpc.2	+	4	446	c.114G>A	c.(112-114)GCG>GCA	p.A38A	PHACTR1_uc011dir.1_Silent_p.A38A|PHACTR1_uc003nag.1_Silent_p.A38A|PHACTR1_uc003nah.1_Silent_p.A38A|PHACTR1_uc003nai.2_Silent_p.A38A	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	38						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			CTCGCCGGGCGACCCTGCTCC	0.368													8	100					0	0	0.000157383	0	0
E2F3	1871	broad.mit.edu	37	6	20402521	20402521	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:20402521G>A	uc003nda.2	+	1	385	c.58G>A	c.(58-60)GAG>AAG	p.E20K	E2F3_uc003ncz.2_Missense_Mutation_p.E20K	NM_001949	NP_001940	O00716	E2F3_HUMAN	E2F transcription factor 3	20					G1 phase of mitotic cell cycle|G2 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1	all_cancers(95;0.154)|all_epithelial(95;0.0585)|Breast(50;0.146)|Ovarian(93;0.148)		OV - Ovarian serous cystadenocarcinoma(7;0.0068)|all cancers(50;0.0148)|Epithelial(50;0.0562)			CGGGGGTGGGGAGGGGGCGGC	0.522													14	125					0	0	0.000958276	0	0
CDKAL1	54901	broad.mit.edu	37	6	20955722	20955723	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:20955722_20955723CC>AA	uc003ndc.1	+	10	989_990	c.815_816CC>AA	c.(814-816)CCC>CAA	p.P272Q	CDKAL1_uc003ndd.1_Missense_Mutation_p.P272Q|CDKAL1_uc003nde.1_Missense_Mutation_p.P202Q	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	272					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			ACCAATCTCCCCACACTCCTGT	0.46													15	313					0	0	6.4e-05	0	0
CDKAL1	54901	broad.mit.edu	37	6	21198298	21198298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:21198298C>T	uc003ndc.1	+	14	1520	c.1346C>T	c.(1345-1347)TCC>TTC	p.S449F	CDKAL1_uc003ndd.1_Missense_Mutation_p.S449F|CDKAL1_uc003nde.1_Missense_Mutation_p.S358F|CDKAL1_uc003ndf.1_Intron|CDKAL1_uc003ndg.2_5'Flank	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	449	TRAM.				RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			TCTTTTGATTCCAAGTTTTAT	0.378													32	517					0	0	0.00111076	0	0
HIST1H2BA	255626	broad.mit.edu	37	6	25727286	25727286	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:25727286C>T	uc003nfd.2	+	1	150	c.150C>T	c.(148-150)GTC>GTT	p.V50V	HIST1H2AA_uc003nfc.2_5'Flank	NM_170610	NP_733759	Q96A08	H2B1A_HUMAN	histone cluster 1, H2ba	50					nucleosome assembly	nucleosome|nucleus	DNA binding			kidney(1)	1						TAAAGCAGGTCCATCCGGACA	0.453													5	52					0	0	0.000602214	0	0
HFE	3077	broad.mit.edu	37	6	26093145	26093145	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:26093145G>A	uc003nfx.1	+	4	1009	c.849G>A	c.(847-849)CAG>CAA	p.Q283Q	HFE_uc003nfy.1_Silent_p.Q260Q|HFE_uc010jqe.1_Silent_p.Q280Q|HFE_uc003nfz.1_Silent_p.Q195Q|HFE_uc003ngd.1_Silent_p.Q181Q|HFE_uc003nga.1_Silent_p.Q269Q|HFE_uc003ngb.1_Silent_p.Q177Q|HFE_uc003ngc.1_Silent_p.Q191Q|HFE_uc003nge.1_Silent_p.Q103Q|HFE_uc003ngf.1_Intron	NM_000410	NP_000401	Q30201	HFE_HUMAN	hemochromatosis protein isoform 1 precursor	283	Alpha-3.|Ig-like C1-type.|Extracellular (Potential).		Q -> P (in HFE; destabilizing effect on the tertiary structure of the protein; prevents the normal interaction between HFE and B2M and between HFE and TFRC; decreases the capacity of HFE to reduce transferrin-mediated iron uptake).		antigen processing and presentation of peptide antigen via MHC class I|cellular iron ion homeostasis|immune response|iron ion transport|protein complex assembly|receptor-mediated endocytosis	apical part of cell|basal part of cell|cytoplasmic vesicle|early endosome|integral to plasma membrane|MHC class I protein complex|perinuclear region of cytoplasm|recycling endosome	protein binding				0						ATACGTGCCAGGTGGAGCACC	0.547									Hemochromatosis				4	39					0	0	0.00024832	0	0
HIST1H1T	3010	broad.mit.edu	37	6	26107780	26107780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:26107780C>T	uc003ngj.2	-	1	585	c.542G>A	c.(541-543)AGC>AAC	p.S181N		NM_005323	NP_005314	P22492	H1T_HUMAN	histone cluster 1, H1t	181					cell differentiation|multicellular organismal development|nucleosome assembly|spermatogenesis	nucleosome	DNA binding			ovary(2)	2						CTTCACTGGGCTCTTCTGCTG	0.473													15	155					0	0	0.000308642	0	0
ZKSCAN4	387032	broad.mit.edu	37	6	28213461	28213461	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:28213461G>A	uc003nks.1	-	5	1315	c.1071C>T	c.(1069-1071)TTC>TTT	p.F357F	ZKSCAN4_uc011dlb.1_Silent_p.F202F	NM_019110	NP_061983	Q969J2	ZKSC4_HUMAN	zinc finger with KRAB and SCAN domains 4	357	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						AGCTCCCAATGAAGGTCTTTC	0.458													25	55					0	0	0.00127121	0	0
GPX5	2880	broad.mit.edu	37	6	28493824	28493824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:28493824C>T	uc003nll.2	+	1	36	c.34C>T	c.(34-36)CCC>TCC	p.P12S	GPX5_uc003nlm.2_Missense_Mutation_p.P12S|GPX5_uc003nln.2_5'Flank	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	12					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	CCATCTGCTTCCCCTTCTCCT	0.498													10	127					0	0	0.00136819	0	0
SCAND3	114821	broad.mit.edu	37	6	28543161	28543161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:28543161C>T	uc003nlo.2	-	3	1939	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	441	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGAAAATTCCCTCCCATTG	0.418													11	35					0	0	0.00136819	0	0
OR2J3	442186	broad.mit.edu	37	6	29079995	29079995	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:29079995C>T	uc011dll.1	+	1	328	c.328C>T	c.(328-330)CTG>TTG	p.L110L		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTTCTCGCACTGGGAACCAC	0.498													7	106					0	0	0.00198382	0	0
OR2J3	442186	broad.mit.edu	37	6	29080168	29080168	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:29080168C>T	uc011dll.1	+	1	501	c.501C>T	c.(499-501)TTC>TTT	p.F167F		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTTCACCTTCTGGGTACCTC	0.488													5	45					0	0	0.000602214	0	0
OR12D3	81797	broad.mit.edu	37	6	29342165	29342165	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:29342165C>T	uc003nme.2	-	1	904	c.900G>A	c.(898-900)CTG>CTA	p.L300L		NM_030959	NP_112221	Q9UGF7	O12D3_HUMAN	olfactory receptor, family 12, subfamily D,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3						AGATTTTCTTCAGAGCCATCA	0.423													17	67					0	0	0.000958276	0	0
TRIM15	89870	broad.mit.edu	37	6	30131762	30131762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:30131762C>T	uc010jrx.2	+	1	780	c.301C>T	c.(301-303)CTC>TTC	p.L101F		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	101	B box-type.				mesodermal cell fate determination	intracellular	zinc ion binding				0						TGCCGAGTTCCTCTGTGTGTT	0.612													4	44					0	0	0.00024832	0	0
TNF	7124	broad.mit.edu	37	6	31544543	31544543	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:31544543G>A	uc003nui.2	+	3	402	c.233_splice	c.e3-1	p.R78_splice	TNF_uc003nuj.2_Splice_Site	NM_000594	NP_000585	P01375	TNFA_HUMAN	tumor necrosis factor alpha						activation of caspase activity|activation of MAPK activity|activation of MAPKKK activity|anti-apoptosis|cellular response to nicotine|chronic inflammatory response to antigenic stimulus|embryonic digestive tract development|induction of apoptosis via death domain receptors|induction of necroptosis by extracellular signals|leukocyte tethering or rolling|necrotic cell death|negative regulation of branching involved in lung morphogenesis|negative regulation of cytokine secretion involved in immune response|negative regulation of fat cell differentiation|negative regulation of interleukin-6 production|negative regulation of lipid catabolic process|negative regulation of lipid storage|negative regulation of viral genome replication|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of chemokine biosynthetic process|positive regulation of chemokine production|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of fever generation|positive regulation of heterotypic cell-cell adhesion|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of membrane protein ectodomain proteolysis|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of NFAT protein import into nucleus|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of podosome assembly|positive regulation of protein complex disassembly|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|receptor biosynthetic process|regulation of insulin secretion|response to glucocorticoid stimulus|response to salt stress|response to virus|sequestering of triglyceride|transformed cell apoptosis|tumor necrosis factor-mediated signaling pathway	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane raft|phagocytic cup|recycling endosome	cytokine activity|identical protein binding|protease binding|transcription regulatory region DNA binding|tumor necrosis factor receptor binding			ovary(1)|pancreas(1)|skin(1)	3		Ovarian(999;0.00556)			Adalimumab(DB00051)|Adenosine(DB00640)|Amrinone(DB01427)|Atorvastatin(DB01076)|Chloroquine(DB00608)|Clenbuterol(DB01407)|Etanercept(DB00005)|Glucosamine(DB01296)|Infliximab(DB00065)|Naltrexone(DB00704)|Pranlukast(DB01411)|Procaterol(DB01366)|Saquinavir(DB01232)|Simvastatin(DB00641)|Thalidomide(DB01041)	CTCCTCTTCAGGATCATCTTC	0.478									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				36	125					0	0	0.00148497	0	0
BAT3	7917	broad.mit.edu	37	6	31611951	31611951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:31611951G>A	uc003nvg.3	-	12	1800	c.1486C>T	c.(1486-1488)CCA>TCA	p.P496S	BAT3_uc003nvf.3_Missense_Mutation_p.P490S|BAT3_uc003nvh.3_Missense_Mutation_p.P490S|BAT3_uc003nvi.3_Missense_Mutation_p.P490S|BAT3_uc011dnw.1_Missense_Mutation_p.P490S|BAT3_uc011dnx.1_Missense_Mutation_p.P490S	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	496	Pro-rich.|4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						GGAGCTGTTGGGAAGCCTGGC	0.662													11	146					0	0	0.00185496	0	0
BAT3	7917	broad.mit.edu	37	6	31617056	31617056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:31617056G>A	uc003nvg.3	-	4	657	c.343C>T	c.(343-345)CCT>TCT	p.P115S	BAT3_uc003nvf.3_Missense_Mutation_p.P115S|BAT3_uc003nvh.3_Missense_Mutation_p.P115S|BAT3_uc003nvi.3_Missense_Mutation_p.P115S|BAT3_uc011dnw.1_Missense_Mutation_p.P115S|BAT3_uc011dnx.1_Missense_Mutation_p.P115S|BAT3_uc003nvj.1_Missense_Mutation_p.P115S	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	115					apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						CGAGTACCAGGGGGGGATCCC	0.587													17	242					0	0	0.000958276	0	0
HSPA1L	3305	broad.mit.edu	37	6	31779006	31779006	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:31779006C>T	uc003nxh.2	-	2	927	c.744G>A	c.(742-744)AAG>AAA	p.K248K	HSPA1L_uc010jte.2_Silent_p.K248K	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	248					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						TGTGTTTCCTCTTGAACTCCT	0.582													21	291					0	0	0.00278032	0	0
CFB	629	broad.mit.edu	37	6	31901440	31901440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:31901440C>T	uc011dor.1	+	3	574	c.310C>T	c.(310-312)CGC>TGC	p.R104C	C2_uc003nyc.2_5'UTR|C2_uc011doo.1_5'UTR|C2_uc011dop.1_Missense_Mutation_p.R43C|C2_uc003nye.3_Missense_Mutation_p.R166C|C2_uc003nyf.2_Missense_Mutation_p.R166C|C2_uc010jtk.2_Missense_Mutation_p.R34C|C2_uc011doq.1_Missense_Mutation_p.R137C|C2_uc003nyg.2_Missense_Mutation_p.R34C	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						GACAGGCTTCCGCTTTGGTCA	0.627													33	120					0	0	0.00170553	0	0
SKIV2L	6499	broad.mit.edu	37	6	31930542	31930542	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:31930542C>T	uc003nyn.1	+	12	1652	c.1263C>T	c.(1261-1263)ATC>ATT	p.I421I	SKIV2L_uc011dou.1_Silent_p.I263I|SKIV2L_uc011dov.1_Silent_p.I228I	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	421	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						AGTGGGTCATCTTTGATGAGG	0.562													65	180					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	32017983	32017983	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32017983G>A	uc003nzl.2	-	27	9427	c.9225C>T	c.(9223-9225)AGC>AGT	p.S3075S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3122	Fibronectin type-III 23.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCCAGGACAGGCTGAGGGAGT	0.667													31	285					0	0	0.00283554	0	0
TNXB	7148	broad.mit.edu	37	6	32046939	32046939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32046939C>T	uc003nzl.2	-	11	4448	c.4246G>A	c.(4246-4248)GTG>ATG	p.V1416M		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1503	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCAACACGCACCGCCCGGGGC	0.652													26	140					0	0	0.000720815	0	0
PRRT1	80863	broad.mit.edu	37	6	32118227	32118227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32118227G>A	uc003nzt.2	-	2	592	c.476C>T	c.(475-477)CCG>CTG	p.P159L	PRRT1_uc003nzs.2_Missense_Mutation_p.P200L|PRRT1_uc003nzu.2_Silent_p.A51A	NM_030651	NP_085154	Q99946	PRRT1_HUMAN	NG5 protein	159					response to biotic stimulus	integral to membrane				breast(1)	1						GCCCCCCAGCGGCAGCGTGCC	0.587													4	11					0	0	0.00116845	0	0
NOTCH4	4855	broad.mit.edu	37	6	32178669	32178669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32178669C>T	uc003obb.2	-	18	2864	c.2725G>A	c.(2725-2727)GAC>AAC	p.D909N	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	909	EGF-like 23.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						GGGCCGCTGTCGACACAGAGG	0.532													20	157					0	0	0.00188189	0	0
C6orf10	10665	broad.mit.edu	37	6	32261670	32261670	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32261670C>T	uc011dpy.1	-	12	953	c.780G>A	c.(778-780)ACG>ACA	p.T260T	C6orf10_uc011dpx.1_Silent_p.T42T	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	260						integral to membrane				skin(1)	1						CTACAGAATTCGTAAATATGA	0.393													8	123					0	0	0.000274275	0	0
HLA-DRB1	3123	broad.mit.edu	37	6	32548626	32548626	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32548626C>T	uc003obp.3	-	4	703	c.660G>A	c.(658-660)CGG>CGA	p.R220R	HLA-DRB1_uc011dqa.1_Silent_p.R50R|HLA-DRB5_uc003obk.3_Intron|HLA-DRB6_uc003obo.1_Intron|uc010jub.1_5'Flank|HLA-DRB1_uc011dqb.1_Intron|HLA-DRB1_uc011dqc.1_Silent_p.R50R	NM_002124	NP_002115	P01911	2B1F_HUMAN	major histocompatibility complex, class II, DR	220	Beta-2.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex				skin(1)	1						CAGATTCAGACCGTGCTCCTG	0.483									Rheumatoid_Arthritis|Sj_gren_syndrome	Multiple Myeloma(14;0.17)			7	78					0	0	0.000157383	0	0
TAP2	6891	broad.mit.edu	37	6	32782951	32782951	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32782951G>A	uc011dqf.1	-	13	2174	c.2052C>T	c.(2050-2052)ACC>ACT	p.T684T	HLA-DOB_uc003oca.2_Silent_p.T77T|HLA-DOB_uc011dqg.1_Silent_p.T77T	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	Error:Variant_position_missing_in_Q03519_after_alignment					antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						GCCCCAGCTTGGTCAATGCCA	0.532													13	58					0	0	0.00244969	0	0
BRD2	6046	broad.mit.edu	37	6	32948364	32948364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32948364G>A	uc003ocn.3	+	13	3976	c.2275G>A	c.(2275-2277)GAG>AAG	p.E759K	BRD2_uc003ocq.3_Missense_Mutation_p.E759K|BRD2_uc003ocp.3_Missense_Mutation_p.E639K|BRD2_uc010juh.2_Missense_Mutation_p.E794K	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	759	ET.				spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						TGCAGCGAATGAGAAAACAGA	0.468													6	57					0	0	0.000157383	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32974861	32974861	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32974861G>A	uc003ocr.2	-	4	821	c.745C>T	c.(745-747)CCC>TCC	p.P249S	HLA-DOA_uc010juj.2_Intron|HLA-DOA_uc010jui.2_3'UTR	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	249	Cytoplasmic (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						CTGCACCTGGGGACACTGGAC	0.617													6	72					0	0	0.00198382	0	0
HLA-DOA	3111	broad.mit.edu	37	6	32976027	32976027	+	Missense_Mutation	SNP	C	T	T	rs41553520		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:32976027C>T	uc003ocr.2	-	2	170	c.94G>A	c.(94-96)GGC>AGC	p.G32S	HLA-DOA_uc010juj.2_Missense_Mutation_p.G2S|HLA-DOA_uc010jui.2_Missense_Mutation_p.G32S	NM_002119	NP_002110	P06340	DOA_HUMAN	major histocompatibility complex, class II, DO	32	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endosome membrane|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0						CCGTAGGAGCCCATGTGGTCA	0.517													4	44					0	0	0.00198382	0	0
TCP11	6954	broad.mit.edu	37	6	35088743	35088743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:35088743C>T	uc003okd.2	-	6	878	c.697G>A	c.(697-699)GAA>AAA	p.E233K	TCP11_uc003ojz.1_Missense_Mutation_p.E158K|TCP11_uc003oka.2_Missense_Mutation_p.E158K|TCP11_uc003okb.2_Missense_Mutation_p.E157K|TCP11_uc003okc.2_Missense_Mutation_p.E157K|TCP11_uc011dsu.1_Missense_Mutation_p.E215K|TCP11_uc011dsv.1_Missense_Mutation_p.E182K|TCP11_uc011dsw.1_Missense_Mutation_p.E187K	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	220					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						ATGGAATGTTCCTGCAGGTGG	0.478													37	162					0	0	0.00128727	0	0
PI16	221476	broad.mit.edu	37	6	36929677	36929677	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:36929677G>A	uc003ona.2	+	4	847	c.519G>A	c.(517-519)GGG>GGA	p.G173G	PI16_uc003omz.1_Silent_p.G173G|PI16_uc003onb.2_Silent_p.G173G|PI16_uc011dts.1_5'UTR	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	173	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						ACGTGAAGGGGAAACGGCCCT	0.627													5	48					0	0	0.000602214	0	0
DNAH8	1769	broad.mit.edu	37	6	38704988	38704988	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:38704988A>T	uc003ooe.1	+	4	857	c.257A>T	c.(256-258)CAT>CTT	p.H86L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TCTGAAAAACATATTTTCACT	0.323													5	66					0	0	0.00116845	0	0
DNAH8	1769	broad.mit.edu	37	6	38783319	38783319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:38783319G>A	uc003ooe.1	+	24	3358	c.2758G>A	c.(2758-2760)GGA>AGA	p.G920R		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGTCAGCAGAGGAGTGGCTCA	0.483													5	26					0	0	0.000602214	0	0
KCNK5	8645	broad.mit.edu	37	6	39159208	39159208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:39159208C>T	uc003oon.2	-	5	1322	c.958G>A	c.(958-960)GAG>AAG	p.E320K		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	320	Cytoplasmic (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GGGCCCGTCTCCCCACCCCCG	0.622													12	63					0	0	0.00136819	0	0
UNC5CL	222643	broad.mit.edu	37	6	41002486	41002486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:41002486G>A	uc003opi.2	-	2	417	c.328C>T	c.(328-330)CAC>TAC	p.H110Y	UNC5CL_uc010jxe.1_Missense_Mutation_p.H110Y	NM_173561	NP_775832	Q8IV45	UN5CL_HUMAN	unc-5 homolog C-like	110	ZU5.|Cytoplasmic (Potential).				signal transduction	cytoplasm|integral to membrane				ovary(2)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCGCCGCGGTGATCCACCTCT	0.512													10	62					0	0	0.000978159	0	0
PTK7	5754	broad.mit.edu	37	6	43128564	43128564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:43128564C>T	uc003oub.1	+	20	3356	c.3158C>T	c.(3157-3159)TCC>TTC	p.S1053F	PTK7_uc003ouc.1_Missense_Mutation_p.S997F|PTK7_uc003oud.1_Missense_Mutation_p.S1013F|PTK7_uc003oue.1_Missense_Mutation_p.S923F|PTK7_uc003ouf.1_RNA|PTK7_uc003oug.1_RNA|PTK7_uc011dve.1_Missense_Mutation_p.S1061F|PTK7_uc010jyj.1_Missense_Mutation_p.S379F|PTK7_uc003ouh.1_3'UTR	NM_002821	NP_002812	Q13308	PTK7_HUMAN	PTK7 protein tyrosine kinase 7 isoform a	1053	Cytoplasmic (Potential).|Protein kinase; inactive.|Interaction with CTNNB1.				actin cytoskeleton reorganization|canonical Wnt receptor signaling pathway|cell adhesion|cell migration	cell-cell junction|integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			ovary(2)|large_intestine(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.00784)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			GACCGGCCCTCCTTCAGTGAG	0.657													5	27					0	0	0.00116845	0	0
GPR116	221395	broad.mit.edu	37	6	46826837	46826837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:46826837G>A	uc003oyo.3	-	17	3092	c.2803C>T	c.(2803-2805)CCA>TCA	p.P935S	GPR116_uc011dwj.1_Missense_Mutation_p.P490S|GPR116_uc011dwk.1_Missense_Mutation_p.P364S|GPR116_uc003oyp.3_Missense_Mutation_p.P793S|GPR116_uc003oyq.3_Missense_Mutation_p.P935S|GPR116_uc010jzi.1_Missense_Mutation_p.P607S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	935	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			ATCCTGAATGGCATAGTTGTA	0.468													9	84					0	0	0.000673444	0	0
RHAG	6005	broad.mit.edu	37	6	49586938	49586938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:49586938C>T	uc003ozk.3	-	2	357	c.295G>A	c.(295-297)GGA>AGA	p.G99R	RHAG_uc010jzl.2_Missense_Mutation_p.G99R|RHAG_uc010jzm.2_Missense_Mutation_p.G99R	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	99	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					TGCAGGATTCCCTGTACAATA	0.373													7	46					0	0	0.00198382	0	0
CRISP2	7180	broad.mit.edu	37	6	49660564	49660564	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:49660564C>T	uc003ozq.2	-	10	910	c.654G>A	c.(652-654)AAG>AAA	p.K218K	CRISP2_uc003ozl.2_Silent_p.K218K|CRISP2_uc003ozn.2_Silent_p.K218K|CRISP2_uc003ozr.2_Silent_p.K218K|CRISP2_uc003ozo.2_Silent_p.K218K|CRISP2_uc003ozm.2_Silent_p.K253K|CRISP2_uc003ozp.2_Silent_p.K218K	NM_001142408	NP_001135880	P16562	CRIS2_HUMAN	cysteine-rich secretory protein 2 precursor	218						extracellular space				skin(1)	1	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CAGCTGTATTCTTCAAGGAAT	0.383													8	55					0	0	0.000274275	0	0
PKHD1	5314	broad.mit.edu	37	6	51512847	51512847	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:51512847A>C	uc003pah.1	-	63	11656	c.11380T>G	c.(11380-11382)TCA>GCA	p.S3794A		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3794	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					ACTGAGTCTGATGCTCCTTCC	0.428													14	99					0	0	0.000308642	0	0
KLHL31	401265	broad.mit.edu	37	6	53519959	53519959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:53519959C>T	uc003pcb.3	-	2	253	c.112G>A	c.(112-114)GAG>AAG	p.E38K		NM_001003760	NP_001003760	Q9H511	KLH31_HUMAN	kelch repeat and BTB (POZ) domain containing 1	38					regulation of transcription, DNA-dependent|transcription, DNA-dependent					ovary(1)	1	Lung NSC(77;0.0158)					TTGCCTCCCTCTAGGAGCCCA	0.413													8	45					0	0	0.000157383	0	0
LRRC1	55227	broad.mit.edu	37	6	53767498	53767498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:53767498G>A	uc003pcd.1	+	9	1136	c.859G>A	c.(859-861)GAA>AAA	p.E287K		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	287	LRR 12.					cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		AGCAGTTGGGGAATGTGAAAG	0.363													26	122					0	0	0.00127121	0	0
FAM83B	222584	broad.mit.edu	37	6	54805003	54805003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:54805003C>T	uc003pck.2	+	5	1350	c.1234C>T	c.(1234-1236)CCA>TCA	p.P412S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	412										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AACCAATAATCCACCTGGTAA	0.458													9	48					0	0	0.000442599	0	0
FAM83B	222584	broad.mit.edu	37	6	54805191	54805191	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:54805191C>T	uc003pck.2	+	5	1538	c.1422C>T	c.(1420-1422)ATC>ATT	p.I474I		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	474										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ATAACCATATCCGCTTTTTGC	0.408													11	48					0	0	0.00136819	0	0
HCRTR2	3062	broad.mit.edu	37	6	55147135	55147135	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:55147135C>T	uc003pcl.2	+	7	1533	c.1218C>T	c.(1216-1218)TCC>TCT	p.S406S	HCRTR2_uc010jzv.2_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	406	Cytoplasmic (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCCGGAAGTCCTTGACCACTC	0.493													5	19					0	0	0.000602214	0	0
GFRAL	389400	broad.mit.edu	37	6	55216156	55216156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:55216156G>A	uc003pcm.1	+	5	562	c.476G>A	c.(475-477)GGA>GAA	p.G159E		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	159	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TCAGCAAATGGAAATCCGTGT	0.453													13	43					0	0	0.00244969	0	0
GFRAL	389400	broad.mit.edu	37	6	55223767	55223767	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:55223767C>T	uc003pcm.1	+	6	869	c.783C>T	c.(781-783)ACC>ACT	p.T261T		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	261	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GCATTAGCACCTTAAGCAAAC	0.438													5	26					0	0	0.00198382	0	0
GFRAL	389400	broad.mit.edu	37	6	55264195	55264195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:55264195G>A	uc003pcm.1	+	8	1163	c.1077G>A	c.(1075-1077)ATG>ATA	p.M359I		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	359	Helical; (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCATGTGCATGACAGTCACCT	0.328													20	84					0	0	0.000720815	0	0
DST	667	broad.mit.edu	37	6	56434769	56434769	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:56434769A>G	uc003pdf.2	-	48	7434	c.7406T>C	c.(7405-7407)TTC>TCC	p.F2469S	DST_uc003pcz.3_Missense_Mutation_p.F2291S|DST_uc011dxj.1_Missense_Mutation_p.F2320S|DST_uc011dxk.1_Missense_Mutation_p.F2331S|DST_uc003pcy.3_Missense_Mutation_p.F1965S	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	4377					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AAGAACTTGGAAAGCATCCAA	0.303													12	58					0	0	0.000978159	0	0
MCART3P	442229	broad.mit.edu	37	6	66498550	66498550	+	RNA	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:66498550C>T	uc011dxw.1	+	1		c.779C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						AAACTTGTATCCTGGAATCCT	0.458													16	25					0	0	0.000308642	0	0
BAI3	577	broad.mit.edu	37	6	69943248	69943248	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:69943248G>A	uc003pev.3	+	18	2995	c.2547G>A	c.(2545-2547)ACG>ACA	p.T849T	BAI3_uc010kak.2_Silent_p.T849T|BAI3_uc011dxx.1_Silent_p.T55T|BAI3_uc003pex.1_5'Flank	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	849	GPS.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CATCCCATACGAAATGCTTAT	0.483													9	100					0	0	0.000274275	0	0
COL19A1	1310	broad.mit.edu	37	6	70897794	70897794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:70897794C>T	uc003pfc.1	+	47	2989	c.2872C>T	c.(2872-2874)CCA>TCA	p.P958S		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	958	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						TCAGGGGATTCCAGGAGACAG	0.418													8	38					0	0	0.000442599	0	0
COL9A1	1297	broad.mit.edu	37	6	70948986	70948986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:70948986C>T	uc003pfg.3	-	33	2242	c.2083G>A	c.(2083-2085)GAT>AAT	p.D695N	COL9A1_uc003pfe.3_Missense_Mutation_p.D244N|COL9A1_uc003pff.3_Missense_Mutation_p.D452N	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	695	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AATCCTATATCTCCCTAAATC	0.264													27	95					0	0	0.0024448	0	0
COL9A1	1297	broad.mit.edu	37	6	71011744	71011744	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:71011744G>A	uc003pfg.3	-	2	207	c.48C>T	c.(46-48)TTC>TTT	p.F16F		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	16					axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AGGGTTCCAGGAAACTGCACA	0.448													6	24					0	0	0.00198382	0	0
FAM135A	57579	broad.mit.edu	37	6	71243496	71243496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:71243496C>T	uc003pfj.2	+	16	4037	c.3904C>T	c.(3904-3906)CGT>TGT	p.R1302C	FAM135A_uc003pfi.2_Missense_Mutation_p.R1106C|FAM135A_uc003pfh.2_Missense_Mutation_p.R1089C|FAM135A_uc003pfl.2_Missense_Mutation_p.R969C|FAM135A_uc003pfn.2_Missense_Mutation_p.R508C|FAM135A_uc003pfo.1_Missense_Mutation_p.R673C|FAM135A_uc010kan.1_Missense_Mutation_p.R81C	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	1302										central_nervous_system(1)	1						CATGACTGATCGTCTTTTGGA	0.259													7	114					0	0	0.000157383	0	0
RIMS1	22999	broad.mit.edu	37	6	72945352	72945352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:72945352G>A	uc003pga.2	+	8	1855	c.1778G>A	c.(1777-1779)GGG>GAG	p.G593E	RIMS1_uc011dyb.1_Missense_Mutation_p.G219E|RIMS1_uc003pgc.2_Missense_Mutation_p.G219E|RIMS1_uc010kaq.2_Missense_Mutation_p.G67E|RIMS1_uc011dyc.1_Missense_Mutation_p.G67E|RIMS1_uc010kar.2_5'UTR|RIMS1_uc011dyd.1_Missense_Mutation_p.G52E|RIMS1_uc003pgb.3_Missense_Mutation_p.G219E|RIMS1_uc010kas.1_Missense_Mutation_p.G52E	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	593					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				TCTAAAGAGGGGGACCGATTA	0.318													4	12					0	0	0.000602214	0	0
EEF1A1	1915	broad.mit.edu	37	6	74229629	74229629	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:74229629T>A	uc003phi.2	-	1	158	c.121A>T	c.(121-123)AAA>TAA	p.K41*	EEF1A1_uc003phd.2_5'Flank|EEF1A1_uc003phe.2_Nonsense_Mutation_p.K41*|EEF1A1_uc003phf.2_Nonsense_Mutation_p.K41*|EEF1A1_uc003phg.2_Nonsense_Mutation_p.K41*|EEF1A1_uc003phh.2_5'UTR|EEF1A1_uc003phj.2_Nonsense_Mutation_p.K41*|EEF1A1_uc003phk.2_Nonsense_Mutation_p.K41*|EEF1A1_uc003phl.2_Nonsense_Mutation_p.K41*|EEF1A1_uc003phm.1_RNA	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	41						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						TTCTCAAATTTTTCAATGGTT	0.413													13	112					0	0	0.000566183	0	0
COL12A1	1303	broad.mit.edu	37	6	75811327	75811327	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:75811327G>A	uc003phs.2	-	58	8678	c.8512C>T	c.(8512-8514)CCA>TCA	p.P2838S	COL12A1_uc003pht.2_Missense_Mutation_p.P1674S	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2838	Triple-helical region (COL2) with 1 imperfection.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CTGTCTCCTGGAGGTCCCATT	0.433													9	50					0	0	0.00136819	0	0
IMPG1	3617	broad.mit.edu	37	6	76715077	76715077	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:76715077G>A	uc003pik.1	-	10	1192	c.1062C>T	c.(1060-1062)GAC>GAT	p.D354D		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	354					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				GCCTTTTGAGGTCTGTAGCTG	0.423													7	65					0	0	0.00198382	0	0
DOPEY1	23033	broad.mit.edu	37	6	83863287	83863287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:83863287C>T	uc003pjs.1	+	31	6447	c.6187C>T	c.(6187-6189)CCT>TCT	p.P2063S	DOPEY1_uc011dyy.1_Missense_Mutation_p.P2054S|DOPEY1_uc010kbl.1_Missense_Mutation_p.P2054S|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	2063					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		GCGGGTTATTCCTTTACTTGT	0.299													15	139					0	0	0.000422831	0	0
ME1	4199	broad.mit.edu	37	6	84108219	84108219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:84108219C>T	uc003pjy.2	-	3	335	c.229G>A	c.(229-231)GAT>AAT	p.D77N	ME1_uc011dzb.1_Missense_Mutation_p.D2N|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	77					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TCTTGGAGATCCATTAAGAGA	0.328													8	69					0	0	0.000274275	0	0
HTR1E	3354	broad.mit.edu	37	6	87725778	87725778	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:87725778C>T	uc003pli.2	+	2	1429	c.726C>T	c.(724-726)TTC>TTT	p.F242F		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	242	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CACAGACTTTCTGTGTGTCTG	0.468													24	122					0	0	0.001512	0	0
SPACA1	81833	broad.mit.edu	37	6	88767396	88767396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:88767396G>A	uc003pmn.2	+	3	449	c.332G>A	c.(331-333)CGG>CAG	p.R111Q		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	111	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		TGTGTTGTACGGGTAGAAGAA	0.393													5	36					0	0	0.00116845	0	0
CNR1	1268	broad.mit.edu	37	6	88853780	88853780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:88853780C>T	uc011dzq.1	-	2	4777	c.1214G>A	c.(1213-1215)CGA>CAA	p.R405Q	CNR1_uc010kbz.2_Missense_Mutation_p.R405Q|CNR1_uc011dzr.1_Missense_Mutation_p.R405Q|CNR1_uc011dzs.1_Missense_Mutation_p.R405Q|CNR1_uc003pmq.3_Missense_Mutation_p.R405Q|CNR1_uc011dzt.1_Missense_Mutation_p.R405Q|CNR1_uc010kca.2_Missense_Mutation_p.R372Q	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	405	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	GAAAGCGTGTCGCAGGTCCTT	0.527													6	47					0	0	0.00116845	0	0
CNR1	1268	broad.mit.edu	37	6	88854696	88854696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:88854696C>T	uc011dzq.1	-	2	3861	c.298G>A	c.(298-300)GAG>AAG	p.E100K	CNR1_uc010kbz.2_Missense_Mutation_p.E100K|CNR1_uc011dzr.1_Missense_Mutation_p.E100K|CNR1_uc011dzs.1_Missense_Mutation_p.E100K|CNR1_uc003pmq.3_Missense_Mutation_p.E100K|CNR1_uc011dzt.1_Missense_Mutation_p.E100K|CNR1_uc010kca.2_Missense_Mutation_p.E67K	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	100	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	ATGAAGTTCTCCCCACACTGG	0.532													11	40					0	0	0.000978159	0	0
SFRS13B	135295	broad.mit.edu	37	6	89808325	89808325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:89808325C>T	uc003pmy.3	-	5	952	c.758G>A	c.(757-759)CGA>CAA	p.R253Q		NM_080743	NP_542781	Q8WXF0	SRS12_HUMAN	serine-arginine repressor protein	253	Arg/Ser-rich (RS domain).				assembly of spliceosomal tri-snRNP|cytoplasmic transport|negative regulation of nuclear mRNA splicing, via spliceosome|nuclear mRNA 5'-splice site recognition|regulation of alternative nuclear mRNA splicing, via spliceosome	nucleoplasm	nucleotide binding|RNA binding|RS domain binding|unfolded protein binding				0						ACGATAACTTCGAGATCTGGA	0.358													14	102					0	0	0.000566183	0	0
GABRR1	2569	broad.mit.edu	37	6	89910965	89910965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:89910965G>A	uc003pna.2	-	3	648	c.193C>T	c.(193-195)CCT>TCT	p.P65S	GABRR1_uc011dzv.1_Missense_Mutation_p.P42S	NM_002042	NP_002033	P24046	GBRR1_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 1	65	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			pancreas(1)	1		all_cancers(76;9.49e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.46e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00917)	Picrotoxin(DB00466)	GTGATGTCAGGACTTCGTCTC	0.453													6	80					0	0	0.00198382	0	0
GJA10	84694	broad.mit.edu	37	6	90604655	90604655	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:90604655T>C	uc011eaa.1	+	1	468	c.468T>C	c.(466-468)ACT>ACC	p.T156T		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	156	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		TGCTGCGTACTTATGTCTTAC	0.438													6	84					0	0	0.00116845	0	0
SFRS18	25957	broad.mit.edu	37	6	99848994	99848995	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:99848994_99848995GG>AA	uc003ppo.3	-	12	2067_2068	c.1839_1840CC>TT	c.(1837-1842)TCCCGA>TCTTGA	p.R614*	SFRS18_uc003ppl.2_Nonsense_Mutation_p.R160*|SFRS18_uc003ppp.3_Nonsense_Mutation_p.R614*|SFRS18_uc011eag.1_Nonsense_Mutation_p.R614*	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	614						nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		CGTCTCTCTCGGGAAGGACTCC	0.436													6	52					0	0	6.4e-05	0	0
GRIK2	2898	broad.mit.edu	37	6	102069868	102069868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:102069868G>A	uc003pqp.3	+	2	409	c.160G>A	c.(160-162)GAA>AAA	p.E54K	GRIK2_uc003pqn.2_Missense_Mutation_p.E54K|GRIK2_uc003pqo.3_Missense_Mutation_p.E54K|GRIK2_uc010kcw.2_Missense_Mutation_p.E54K	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	54	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	GGGAGCTGAGGAACTTGCATT	0.348													4	33					0	0	0.000602214	0	0
AIM1	202	broad.mit.edu	37	6	107003692	107003692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:107003692G>A	uc003prh.2	+	15	4898	c.4411G>A	c.(4411-4413)GAA>AAA	p.E1471K	AIM1_uc003pri.2_Missense_Mutation_p.E275K	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1471	Beta/gamma crystallin 'Greek key' 10.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		ATACGTGTTGGAAGAAGGCCA	0.413													12	119					0	0	0.000978159	0	0
C6orf186	728464	broad.mit.edu	37	6	110636592	110636592	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:110636592A>T	uc010kdu.1	-	3	510	c.510T>A	c.(508-510)AAT>AAA	p.N170K	C6orf186_uc003pub.2_Intron	NM_001123364	NP_001116836	Q5JXM2	CF186_HUMAN	chromosome 6 open reading frame 186 precursor	170						extracellular region					0						GATGAGCTAAATTGAACCTGT	0.458													7	87					0	0	0.00198382	0	0
SLC22A16	85413	broad.mit.edu	37	6	110757127	110757127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:110757127C>T	uc003puf.2	-	6	1416	c.1349G>A	c.(1348-1350)GGA>GAA	p.G450E	SLC22A16_uc003pue.2_Missense_Mutation_p.G431E	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	450	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GGCAAATTTTCCAACCATAGC	0.348													6	82					0	0	0.00198382	0	0
CDK19	23097	broad.mit.edu	37	6	110959894	110959894	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:110959894G>A	uc003puh.1	-	5	545	c.472C>T	c.(472-474)CTA>TTA	p.L158L	CDK19_uc003pui.1_Silent_p.L98L|CDK19_uc011eax.1_Silent_p.L34L	NM_015076	NP_055891	Q9BWU1	CDK19_HUMAN	cell division cycle 2-like 6 (CDK8-like)	158	Protein kinase.						ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4						CCCATTACTAGGATATTTGCT	0.303													22	231					0	0	0.000586117	0	0
DSE	29940	broad.mit.edu	37	6	116747768	116747768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:116747768C>T	uc003pws.2	+	3	642	c.448C>T	c.(448-450)CCG>TCG	p.P150S	DSE_uc011ebf.1_Missense_Mutation_p.P150S|DSE_uc011ebg.1_Missense_Mutation_p.P169S|DSE_uc003pwt.2_Missense_Mutation_p.P150S	NM_001080976	NP_001074445	Q9UL01	DSE_HUMAN	dermatan sulfate epimerase precursor	150					dermatan sulfate biosynthetic process	endoplasmic reticulum|Golgi apparatus|integral to membrane	chondroitin-glucuronate 5-epimerase activity			ovary(1)	1		all_cancers(87;0.00019)|all_epithelial(87;0.000416)|Ovarian(999;0.133)|Colorectal(196;0.234)		Epithelial(106;0.00915)|OV - Ovarian serous cystadenocarcinoma(136;0.0149)|GBM - Glioblastoma multiforme(226;0.0189)|all cancers(137;0.0262)		GGATGAGGTCCCGCTTGCTCA	0.438													16	68					0	0	0.00074312	0	0
FAM26F	441168	broad.mit.edu	37	6	116784674	116784675	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:116784674_116784675CC>TT	uc003pwv.2	+	3	849_850	c.754_755CC>TT	c.(754-756)CCA>TTA	p.P252L		NM_001010919	NP_001010919	Q5R3K3	FA26F_HUMAN	hypothetical protein LOC441168	252						integral to membrane					0				GBM - Glioblastoma multiforme(226;0.0402)|all cancers(137;0.0627)|OV - Ovarian serous cystadenocarcinoma(136;0.0655)|Epithelial(106;0.231)		ATATAACACTCCAAGCATGAAA	0.391													28	132					0	0	6.4e-05	0	0
CLVS2	134829	broad.mit.edu	37	6	123332168	123332168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:123332168C>T	uc003pzi.1	+	3	1297	c.428C>T	c.(427-429)TCT>TTT	p.S143F		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	143	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						ATCTTACTTTCTTTAGAAGCC	0.388													7	64					0	0	0.000274275	0	0
C6orf174	387104	broad.mit.edu	37	6	127796726	127796726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:127796726C>T	uc003qbd.2	-	6	3310	c.2445G>A	c.(2443-2445)ATG>ATA	p.M815I	C6orf174_uc003qbc.2_5'UTR	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	815	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GGATGTCCTTCATCTGCTGCC	0.672													10	82					0	0	0.000978159	0	0
C6orf58	352999	broad.mit.edu	37	6	127911434	127911434	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:127911434C>T	uc003qbh.2	+	5	889	c.877C>T	c.(877-879)CTT>TTT	p.L293F		NM_001010905	NP_001010905	Q6P5S2	CF058_HUMAN	hypothetical protein LOC352999 precursor	293						extracellular region					0				GBM - Glioblastoma multiforme(226;0.0405)|all cancers(137;0.156)		AGTCCTGGTTCTTCTAAATAT	0.338													9	167					0	0	0.00244969	0	0
THEMIS	387357	broad.mit.edu	37	6	128150694	128150694	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:128150694C>T	uc003qbi.2	-	4	955	c.636G>A	c.(634-636)ACG>ACA	p.T212T	THEMIS_uc010kfa.2_Silent_p.T115T|THEMIS_uc011ebt.1_Silent_p.T212T|THEMIS_uc010kfb.2_Silent_p.T177T	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	212	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						GAAATGGATTCGTTGAGTCCC	0.353													19	87					0	0	0.00152264	0	0
PTPRK	5796	broad.mit.edu	37	6	128718786	128718786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:128718786C>T	uc003qbk.2	-	2	515	c.148G>A	c.(148-150)GAT>AAT	p.D50N	PTPRK_uc003qbj.2_Missense_Mutation_p.D50N|PTPRK_uc010kfc.2_Missense_Mutation_p.D50N|PTPRK_uc011ebu.1_Missense_Mutation_p.D50N|PTPRK_uc003qbl.1_Silent_p.R10R|PTPRK_uc011ebv.1_Missense_Mutation_p.D50N|PTPRK_uc003qbm.3_5'UTR	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	50	Extracellular (Potential).|MAM.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TCATACAGATCCTGGTGGTAA	0.443													6	131					0	0	0.000157383	0	0
LAMA2	3908	broad.mit.edu	37	6	129465092	129465092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:129465092C>T	uc003qbn.2	+	5	791	c.686C>T	c.(685-687)TCT>TTT	p.S229F	LAMA2_uc003qbo.2_Missense_Mutation_p.S229F	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	229	Laminin N-terminal.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GATGATCCTTCTCCAGAACTG	0.373													6	26					0	0	0.00116845	0	0
LAMA2	3908	broad.mit.edu	37	6	129837342	129837342	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:129837342C>T	uc003qbn.2	+	64	9324	c.9219C>T	c.(9217-9219)CTC>CTT	p.L3073L	LAMA2_uc003qbo.2_Silent_p.L3069L|uc003qbq.2_Intron	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	3073	Laminin G-like 5.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CAGATGACCTCAAGCAGTTTG	0.448													28	237					0	0	0.000692331	0	0
ARHGAP18	93663	broad.mit.edu	37	6	129927071	129927071	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:129927071A>C	uc003qbr.2	-	10	1405	c.1316T>G	c.(1315-1317)TTG>TGG	p.L439W	ARHGAP18_uc011ebw.1_Missense_Mutation_p.L439W	NM_033515	NP_277050	Q8N392	RHG18_HUMAN	Rho GTPase activating protein 18	439	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			ovary(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(136;0.0621)|GBM - Glioblastoma multiforme(226;0.0638)|all cancers(137;0.074)		AAGAAGGTTCAAAGCCTGTAG	0.363													10	120					0	0	0.00136819	0	0
SAMD3	154075	broad.mit.edu	37	6	130476046	130476046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:130476046C>T	uc003qbv.2	-	10	1273	c.947G>A	c.(946-948)AGA>AAA	p.R316K	SAMD3_uc003qbx.2_Missense_Mutation_p.R316K|SAMD3_uc003qbw.2_Missense_Mutation_p.R316K	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	316										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		CATCTTTCTTCTTATTTCCAA	0.363													22	100					0	0	0.00278032	0	0
TMEM200A	114801	broad.mit.edu	37	6	130761868	130761868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:130761868G>A	uc003qca.2	+	3	1172	c.301G>A	c.(301-303)GAA>AAA	p.E101K	TMEM200A_uc010kfh.2_Missense_Mutation_p.E101K|TMEM200A_uc010kfi.2_Missense_Mutation_p.E101K|TMEM200A_uc003qcb.2_Missense_Mutation_p.E101K	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	101	Extracellular (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GTCAACAAATGAAACTCAGGT	0.433													21	87					0	0	0.00278032	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762066	130762066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:130762066G>A	uc003qca.2	+	3	1370	c.499G>A	c.(499-501)GTC>ATC	p.V167I	TMEM200A_uc010kfh.2_Missense_Mutation_p.V167I|TMEM200A_uc010kfi.2_Missense_Mutation_p.V167I|TMEM200A_uc003qcb.2_Missense_Mutation_p.V167I	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	167	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CTATTCCACAGTCATTGACAT	0.408													9	41					0	0	0.000673444	0	0
EPB41L2	2037	broad.mit.edu	37	6	131277193	131277193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:131277193C>T	uc003qch.2	-	2	615	c.433G>A	c.(433-435)GAA>AAA	p.E145K	EPB41L2_uc003qcg.1_Missense_Mutation_p.E145K|EPB41L2_uc011eby.1_Missense_Mutation_p.E145K|EPB41L2_uc003qci.2_Missense_Mutation_p.E145K|EPB41L2_uc010kfk.2_Missense_Mutation_p.E145K|EPB41L2_uc010kfl.1_Missense_Mutation_p.E145K	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	145					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		GGTTTTTCTTCCTTGACTTCA	0.423													51	230					0	0	0.000781405	0	0
EPB41L2	2037	broad.mit.edu	37	6	131277395	131277395	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:131277395G>A	uc003qch.2	-	2	413	c.231C>T	c.(229-231)TTC>TTT	p.F77F	EPB41L2_uc003qcg.1_Silent_p.F77F|EPB41L2_uc011eby.1_Silent_p.F77F|EPB41L2_uc003qci.2_Silent_p.F77F|EPB41L2_uc010kfk.2_Silent_p.F77F|EPB41L2_uc010kfl.1_Silent_p.F77F	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	77					cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		atggCGGTATGAACCGAGAAA	0.343													11	107					0	0	0.00136819	0	0
MED23	9439	broad.mit.edu	37	6	131944520	131944520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:131944520G>A	uc003qcs.1	-	5	541	c.367C>T	c.(367-369)CGG>TGG	p.R123W	MED23_uc003qcq.2_Missense_Mutation_p.R123W|MED23_uc003qct.1_Missense_Mutation_p.R123W|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	123					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		ATTATTTTCCGAACCAGTTTA	0.343													8	83					0	0	0.000978159	0	0
TAAR2	9287	broad.mit.edu	37	6	132939122	132939122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:132939122G>A	uc003qdl.1	-	2	223	c.223C>T	c.(223-225)CAC>TAC	p.H75Y	TAAR2_uc010kfr.1_Missense_Mutation_p.H30Y	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	75	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		GTTGGTGTGTGAAGCTGCTTG	0.433													13	40					0	0	0.00244969	0	0
SLC2A12	154091	broad.mit.edu	37	6	134350155	134350155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:134350155G>A	uc003qem.1	-	2	979	c.808C>T	c.(808-810)CGT>TGT	p.R270C		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	270	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		TCTTTTGAACGAAACAGATCC	0.388													8	74					0	0	0.000157383	0	0
SLC35D3	340146	broad.mit.edu	37	6	137245231	137245231	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:137245231C>T	uc003qhe.2	+	2	813	c.648C>T	c.(646-648)ACC>ACT	p.T216T		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	216					carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		ACGCCTGGACCTTCCCGGGCT	0.647													5	20					0	0	0.000602214	0	0
CCDC28A	25901	broad.mit.edu	37	6	139094905	139094905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:139094905C>T	uc003qie.2	+	1	249	c.94C>T	c.(94-96)CGT>TGT	p.R32C	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	32											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		ACGTCACTTCCGTAAACAAAC	0.637													9	120					0	0	0.000442599	0	0
HIVEP2	3097	broad.mit.edu	37	6	143091182	143091182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:143091182G>A	uc003qjd.2	-	5	5437	c.4694C>T	c.(4693-4695)TCT>TTT	p.S1565F		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1565	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TTCATCTGAAGATTCTTTGCT	0.537													21	91					0	0	0.00278032	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093287	143093287	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:143093287G>A	uc003qjd.2	-	5	3332	c.2589C>T	c.(2587-2589)CCC>CCT	p.P863P		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	863					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GAGATGGAGAGGGTTTCCCCC	0.572													7	44					0	0	0.000157383	0	0
NUP43	348995	broad.mit.edu	37	6	150057737	150057737	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:150057737G>A	uc003qmz.2	-	6	717	c.660C>T	c.(658-660)CTC>CTT	p.L220L	NUP43_uc003qmx.3_RNA|NUP43_uc011eee.1_RNA|NUP43_uc011eef.1_Intron	NM_198887	NP_942590	Q8NFH3	NUP43_HUMAN	nucleoporin 43kDa	220	WD 5.				carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			upper_aerodigestive_tract(1)	1		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;4.71e-13)|GBM - Glioblastoma multiforme(68;0.101)		CAACACAGTGGAGTGGCACTC	0.408													15	58					0	0	0.000422831	0	0
SYNE1	23345	broad.mit.edu	37	6	152457867	152457867	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:152457867C>T	uc010kiw.2	-	141	26147	c.25545G>A	c.(25543-25545)AAG>AAA	p.K8515K	SYNE1_uc010kiv.2_Silent_p.K3039K|SYNE1_uc003qos.3_Silent_p.K3039K|SYNE1_uc003qot.3_Silent_p.K8467K|SYNE1_uc003qou.3_Silent_p.K8515K|SYNE1_uc003qop.3_Silent_p.K700K|SYNE1_uc011eez.1_Silent_p.K717K|SYNE1_uc003qoq.3_Silent_p.K717K|SYNE1_uc003qor.3_Silent_p.K1438K	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8515	Cytoplasmic (Potential).|Spectrin 31.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCCGGCTCTCCTTGCTGTCAG	0.597										HNSCC(10;0.0054)			9	55					0	0	0.000442599	0	0
SYNE1	23345	broad.mit.edu	37	6	152737990	152737990	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:152737990T>A	uc010kiw.2	-	41	6184	c.5582A>T	c.(5581-5583)GAG>GTG	p.E1861V	SYNE1_uc003qot.3_Missense_Mutation_p.E1868V|SYNE1_uc003qou.3_Missense_Mutation_p.E1861V|SYNE1_uc010kjb.1_Missense_Mutation_p.E1844V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1861	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGCCGCCTCTCCACAACCTG	0.602										HNSCC(10;0.0054)			8	46					0	0	0.000274275	0	0
MYCT1	80177	broad.mit.edu	37	6	153043241	153043241	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:153043241C>T	uc003qpd.3	+	2	569	c.561C>T	c.(559-561)CTC>CTT	p.L187L	MYCT1_uc010kjc.1_Silent_p.L139L|MYCT1_uc003qpc.3_Silent_p.L187L	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	187						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		TGGTGACTCTCCCTTCTTCCA	0.493													9	45					0	0	0.000673444	0	0
VIP	7432	broad.mit.edu	37	6	153073396	153073396	+	Silent	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:153073396T>G	uc003qpe.2	+	2	256	c.84T>G	c.(82-84)CTT>CTG	p.L28L	VIP_uc003qpf.2_Silent_p.L28L|VIP_uc010kjd.2_Silent_p.L28L	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	28					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		CATGGCCTCTTTACAGGGCAC	0.453													4	22					0	0	0.00024832	0	0
ARID1B	57492	broad.mit.edu	37	6	157469899	157469899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:157469899G>A	uc003qqn.2	+	8	2632	c.2480G>A	c.(2479-2481)CGA>CAA	p.R827Q	ARID1B_uc003qqo.2_Missense_Mutation_p.R840Q|ARID1B_uc003qqp.2_Missense_Mutation_p.R827Q|ARID1B_uc003qqq.1_Missense_Mutation_p.R269Q|ARID1B_uc010kjl.2_Missense_Mutation_p.R25Q	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	885					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CCCCTGGGACGAATGCCATCA	0.587													16	67					0	0	0.000958276	0	0
SYNJ2	8871	broad.mit.edu	37	6	158449911	158449911	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:158449911A>G	uc003qqx.1	+	3	413	c.338A>G	c.(337-339)GAG>GGG	p.E113G	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Missense_Mutation_p.E113G|SYNJ2_uc003qqy.1_5'UTR|SYNJ2_uc011efn.1_Missense_Mutation_p.E62G|SYNJ2_uc010kjo.1_Missense_Mutation_p.E62G	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	113							nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		GAGGCCAAGGAGGAGGAACGC	0.507													5	59					0	0	0.00198382	0	0
FNDC1	84624	broad.mit.edu	37	6	159687229	159687229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:159687229C>T	uc010kjv.2	+	21	5598	c.5398C>T	c.(5398-5400)CTT>TTT	p.L1800F		NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	1800						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GGGAGTTGTTCTTTGTAATTC	0.443													11	109					0	0	0.000673444	0	0
LPA	4018	broad.mit.edu	37	6	161010726	161010727	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:161010726_161010727GG>AA	uc003qtl.2	-	25	3925_3926	c.3805_3806CC>TT	c.(3805-3807)CCC>TTC	p.P1269F		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3777	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CTGGACTGTGGGGCTTTGCTCC	0.446													8	33					0	0	6.4e-05	0	0
PLG	5340	broad.mit.edu	37	6	161152219	161152219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:161152219C>T	uc003qtm.3	+	11	1456	c.1393C>T	c.(1393-1395)CCG>TCG	p.P465S		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	465					extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TGTAGCACCTCCGCCTGTTGT	0.512													10	46					0	0	0.00136819	0	0
MAP3K4	4216	broad.mit.edu	37	6	161470424	161470424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:161470424C>T	uc003qtn.2	+	3	1262	c.1120C>T	c.(1120-1122)CTT>TTT	p.L374F	MAP3K4_uc010kkc.1_Missense_Mutation_p.L374F|MAP3K4_uc003qto.2_Missense_Mutation_p.L374F|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_5'UTR	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	374					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		ATTGCAGGCTCTTCAGAAGGA	0.423													5	45					0	0	0.00116845	0	0
RNASET2	8635	broad.mit.edu	37	6	167362086	167362086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:167362086G>A	uc003qve.2	-	3	582	c.175C>T	c.(175-177)CCG>TCG	p.P59S	RNASET2_uc003qvh.2_Intron|RNASET2_uc003qvf.2_5'UTR|RNASET2_uc003qvg.2_5'UTR|RNASET2_uc003qvi.1_Intron	NM_003730	NP_003721	O00584	RNT2_HUMAN	ribonuclease T2 precursor	59					RNA catabolic process	extracellular region	ribonuclease T2 activity|RNA binding				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;1.53e-19)|BRCA - Breast invasive adenocarcinoma(81;5.01e-06)|GBM - Glioblastoma multiforme(31;0.00665)		CAGTAATCCGGAGGGTCTCTA	0.388													8	99					0	0	0.000274275	0	0
UNC93A	54346	broad.mit.edu	37	6	167719430	167719430	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:167719430C>T	uc003qvq.2	+	6	1043	c.868C>T	c.(868-870)CAG>TAG	p.Q290*	UNC93A_uc003qvr.2_Nonsense_Mutation_p.Q248*	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	290						integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CCTGGGCATCCAGTTCGTCGG	0.612													12	141					0	0	0.00136819	0	0
TTLL2	83887	broad.mit.edu	37	6	167754713	167754713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:167754713G>A	uc003qvs.1	+	3	1413	c.1325G>A	c.(1324-1326)AGT>AAT	p.S442N	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	442					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		GCTGCAAAAAGTGACAGAGGT	0.433													5	69					0	0	0.00116845	0	0
SUN1	23353	broad.mit.edu	37	7	883119	883119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:883119C>T	uc011jvp.1	+	6	699	c.620C>T	c.(619-621)CCC>CTC	p.P207L	SUN1_uc010ksa.1_Missense_Mutation_p.P228L|SUN1_uc003sje.1_Missense_Mutation_p.P207L|SUN1_uc003sjf.2_Missense_Mutation_p.P157L|SUN1_uc011jvq.1_Intron|SUN1_uc003sjg.2_Missense_Mutation_p.P18L	NM_001130965	NP_001124437	O94901	SUN1_HUMAN	unc-84 homolog A isoform a	207	Nuclear.				cytoskeletal anchoring at nuclear membrane|nuclear matrix anchoring at nuclear membrane	integral to membrane|nuclear inner membrane|SUN-KASH complex	protein binding				0						GCCCCCGGGCCCGTGTCGAGA	0.547													6	201					0	0	0.00116845	0	0
COL28A1	340267	broad.mit.edu	37	7	7491972	7491972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:7491972C>T	uc003src.1	-	18	1604	c.1487G>A	c.(1486-1488)GGA>GAA	p.G496E	COL28A1_uc011jxe.1_Missense_Mutation_p.G179E|COL28A1_uc003srd.2_Missense_Mutation_p.G51E	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	496					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		TACTCCAATTCCCACTGGTCC	0.398													9	73					0	0	0.00185496	0	0
NXPH1	30010	broad.mit.edu	37	7	8791023	8791023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:8791023G>A	uc003srv.2	+	3	1351	c.440G>A	c.(439-441)GGG>GAG	p.G147E	NXPH1_uc011jxh.1_Missense_Mutation_p.G30E	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	147	III.					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		CATGGCAATGGGACATTTAGT	0.388													7	40					0	0	0.000274275	0	0
THSD7A	221981	broad.mit.edu	37	7	11676471	11676471	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:11676471T>A	uc003ssf.3	-	2	560	c.308A>T	c.(307-309)GAG>GTG	p.E103V		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	103	TSP type-1 1.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ATTGGGTCTCTCGGCCTGCTT	0.507										HNSCC(18;0.044)			7	68					0	0	0.00198382	0	0
TMEM106B	54664	broad.mit.edu	37	7	12263918	12263918	+	Silent	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:12263918T>A	uc011jxk.1	+	5	748	c.348T>A	c.(346-348)CTT>CTA	p.L116L	TMEM106B_uc003ssh.2_Silent_p.L116L	NM_018374	NP_060844	Q9NUM4	T106B_HUMAN	transmembrane protein 106B	116	Helical; (Potential).					integral to membrane					0				UCEC - Uterine corpus endometrioid carcinoma (126;0.185)		TGTTTTTCCTTTTCCCTCGCT	0.378													14	183					0	0	0.00185496	0	0
HDAC9	9734	broad.mit.edu	37	7	18767250	18767250	+	Silent	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:18767250T>G	uc003suh.2	+	12	1811	c.1770T>G	c.(1768-1770)GCT>GCG	p.A590A	HDAC9_uc003sue.2_Silent_p.A590A|HDAC9_uc011jyd.1_Silent_p.A590A|HDAC9_uc003sui.2_Silent_p.A593A|HDAC9_uc003suj.2_Silent_p.A549A|HDAC9_uc003sua.1_Silent_p.A568A|HDAC9_uc010kue.1_Silent_p.A245A	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	590					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	TGCGCCAAGCTCCGCTGGCTG	0.547													4	11					0	0	0.00116845	0	0
ITGB8	3696	broad.mit.edu	37	7	20420329	20420329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:20420329C>T	uc003suu.2	+	5	1381	c.676C>T	c.(676-678)CAT>TAT	p.H226Y	ITGB8_uc011jyh.1_Missense_Mutation_p.H91Y|ITGB8_uc003sut.2_Missense_Mutation_p.H226Y	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	226	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						TGGATACATCCATGTGCTGTC	0.408													21	95					0	0	0.000720815	0	0
ABCB5	340273	broad.mit.edu	37	7	20725388	20725388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:20725388C>T	uc003suw.3	+	7	1150	c.604C>T	c.(604-606)CCT>TCT	p.P202S	ABCB5_uc010kuh.2_Missense_Mutation_p.P647S	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	202	Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CAACTCACTTCCTCTGCACTC	0.388													10	42					0	0	0.000673444	0	0
STK31	56164	broad.mit.edu	37	7	23826481	23826481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:23826481G>A	uc003sws.3	+	20	2492	c.2425G>A	c.(2425-2427)GTC>ATC	p.V809I	STK31_uc003swt.3_Missense_Mutation_p.V786I|STK31_uc011jze.1_Missense_Mutation_p.V809I|STK31_uc010kuq.2_Missense_Mutation_p.V786I|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	809	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTATCTGATGGTCCCATACTA	0.358													17	102					0	0	0.00152264	0	0
STK31	56164	broad.mit.edu	37	7	23826541	23826541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:23826541G>A	uc003sws.3	+	20	2552	c.2485G>A	c.(2485-2487)GAA>AAA	p.E829K	STK31_uc003swt.3_Missense_Mutation_p.E806K|STK31_uc011jze.1_Missense_Mutation_p.E829K|STK31_uc010kuq.2_Missense_Mutation_p.E806K|STK31_uc003swv.1_5'Flank	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	829	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TTTAAATTCAGAAGTAAGTAA	0.299													22	81					0	0	0.00229938	0	0
OSBPL3	26031	broad.mit.edu	37	7	24881957	24881958	+	Missense_Mutation	DNP	GG	TT	TT	rs112775983	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:24881957_24881958GG>TT	uc003sxf.2	-	13	1746_1747	c.1341_1342CC>AA	c.(1339-1344)TCCCTT>TCAATT	p.L448I	OSBPL3_uc003sxd.2_RNA|OSBPL3_uc003sxe.2_RNA|OSBPL3_uc003sxg.2_Missense_Mutation_p.L412I|OSBPL3_uc003sxh.2_Missense_Mutation_p.L417I|OSBPL3_uc003sxi.2_Missense_Mutation_p.L381I|OSBPL3_uc003sxj.1_Missense_Mutation_p.L177I|OSBPL3_uc003sxk.1_Missense_Mutation_p.L146I	NM_015550	NP_056365	Q9H4L5	OSBL3_HUMAN	oxysterol-binding protein-like protein 3 isoform	448					lipid transport		lipid binding|protein binding			skin(1)	1						AACTCAGAAAGGGAGTCAGTGA	0.391													11	297					0	0	6.4e-05	0	0
C7orf31	136895	broad.mit.edu	37	7	25181932	25181932	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:25181932G>A	uc003sxn.1	-	9	1440	c.879C>T	c.(877-879)CCC>CCT	p.P293P	C7orf31_uc003sxm.1_Silent_p.P135P	NM_138811	NP_620166	Q8N865	CG031_HUMAN	hypothetical protein LOC136895	293											0						CCAGTTCAAGGGGGTCCATGG	0.408													12	50					0	0	0.00244969	0	0
HOXA7	3204	broad.mit.edu	37	7	27195938	27195938	+	Missense_Mutation	SNP	G	A	A	rs148543265		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:27195938G>A	uc003sys.2	-	1	359	c.227C>T	c.(226-228)GCC>GTC	p.A76V		NM_006896	NP_008827	P31268	HXA7_HUMAN	homeobox A7	76				DA -> RR (in Ref. 8; AAD00727).	angiogenesis|negative regulation of cell-matrix adhesion|negative regulation of keratinocyte differentiation|negative regulation of leukocyte migration|negative regulation of monocyte differentiation|negative regulation of transcription from RNA polymerase II promoter		sequence-specific DNA binding|transcription factor binding				0						GTTGCCGTAGGCGTCGGCGCC	0.672													7	33					0	0	0.00198382	0	0
INMT	11185	broad.mit.edu	37	7	30795141	30795141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:30795141C>T	uc003tbs.1	+	3	482	c.466C>T	c.(466-468)CTC>TTC	p.L156F	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.L155F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	156						cytoplasm	amine N-methyltransferase activity				0						TGTGTTGCCTCTCGCCGACTG	0.652													5	30					0	0	0.00198382	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31124405	31124405	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:31124405C>T	uc003tca.1	+	8	715	c.492C>T	c.(490-492)TCC>TCT	p.S164S	ADCYAP1R1_uc003tcb.1_Silent_p.S143S|ADCYAP1R1_uc003tcc.1_Silent_p.S164S|ADCYAP1R1_uc003tcd.1_Silent_p.S164S|ADCYAP1R1_uc003tce.1_Silent_p.S164S|ADCYAP1R1_uc003tcf.1_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	164	Helical; Name=1; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						ACAGCACATCCCTCGTCACCC	0.562													13	89					0	0	0.000566183	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378675	31378675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:31378675C>T	uc003tch.2	-	2	561	c.208G>A	c.(208-210)GAA>AAA	p.E70K		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	70					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						AACCCAttttcatcttcctct	0.358													17	93					0	0	0.000566183	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378687	31378687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:31378687C>T	uc003tch.2	-	2	549	c.196G>A	c.(196-198)GAA>AAA	p.E66K		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	66					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						tcttcctcttccctgtcttcc	0.343													14	72					0	0	0.00185496	0	0
PDE1C	5137	broad.mit.edu	37	7	31862735	31862736	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:31862735_31862736CC>TT	uc003tcm.1	-	14	2002_2003	c.1533_1534GG>AA	c.(1531-1536)ACGGAA>ACAAAA	p.E512K	PDE1C_uc003tcn.1_Missense_Mutation_p.E512K|PDE1C_uc003tco.1_Missense_Mutation_p.E572K|PDE1C_uc003tcr.2_Missense_Mutation_p.E512K|PDE1C_uc003tcs.2_Missense_Mutation_p.E512K	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	512	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGCACCACTTCCGTCCAAGTAG	0.49													16	71					0	0	6.4e-05	0	0
PDE1C	5137	broad.mit.edu	37	7	32209569	32209569	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:32209569C>T	uc003tco.1	-	3	731	c.137_splice	c.e3-1	p.R46_splice		NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C						activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			GACTTAGACCCTGAGGCATGG	0.522													6	73					0	0	0.000157383	0	0
BBS9	27241	broad.mit.edu	37	7	33423343	33423343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:33423343C>T	uc003tdn.1	+	18	2368	c.1855C>T	c.(1855-1857)CGC>TGC	p.R619C	BBS9_uc003tdo.1_Missense_Mutation_p.R584C|BBS9_uc003tdp.1_Missense_Mutation_p.R614C|BBS9_uc003tdq.1_Missense_Mutation_p.R579C|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_Missense_Mutation_p.R143C|BBS9_uc003tds.1_Missense_Mutation_p.R42C|BBS9_uc003tdt.2_RNA|BBS9_uc011kao.1_Missense_Mutation_p.R497C	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	619					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			GCTTATTCTTCGCCTTCAAGA	0.333									Bardet-Biedl_syndrome				9	42					0	0	0.000442599	0	0
BMPER	168667	broad.mit.edu	37	7	34094912	34094912	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:34094912C>T	uc011kap.1	+	9	1038	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	308	VWFC 5.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						ACAAGATTTTCCAGGTATGTC	0.468													17	97					0	0	0.000958276	0	0
ANLN	54443	broad.mit.edu	37	7	36478815	36478815	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:36478815C>T	uc003tff.2	+	21	3090	c.2886C>T	c.(2884-2886)GTC>GTT	p.V962V	ANLN_uc011kaz.1_Silent_p.V874V|ANLN_uc003tfg.2_Silent_p.V925V|ANLN_uc010kxe.2_Silent_p.V924V	NM_018685	NP_061155	Q9NQW6	ANLN_HUMAN	anillin, actin binding protein	962	Localization to the cleavage furrow.				cytokinesis|mitosis|regulation of exit from mitosis|septin ring assembly	actomyosin contractile ring|nucleus	actin binding			ovary(2)|skin(1)	3						CTTTGCAGGTCCCCTTTTTAT	0.294													9	98					0	0	0.000673444	0	0
AOAH	313	broad.mit.edu	37	7	36570077	36570077	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:36570077C>G	uc003tfh.3	-	19	1870	c.1469G>C	c.(1468-1470)AGT>ACT	p.S490T	AOAH_uc010kxf.2_Missense_Mutation_p.S490T|AOAH_uc011kba.1_Missense_Mutation_p.S458T	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	490					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						AAATTTCTCACTGGCTGCAAT	0.388													5	54					0	0	0.00198382	0	0
AMPH	273	broad.mit.edu	37	7	38433665	38433665	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:38433665G>A	uc003tgu.2	-	18	1617	c.1548C>T	c.(1546-1548)ACC>ACT	p.T516T	AMPH_uc003tgv.2_Silent_p.T474T|AMPH_uc003tgt.2_Silent_p.T401T|AMPH_uc003tgw.1_Silent_p.T539T|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	516					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CACCCTCAGTGGTTTCAGTTC	0.602													16	85					0	0	0.000566183	0	0
INHBA	3624	broad.mit.edu	37	7	41729952	41729952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:41729952C>T	uc003thq.2	-	2	812	c.577G>A	c.(577-579)GAG>AAG	p.E193K	INHBA_uc003thr.2_Missense_Mutation_p.E193K	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	193					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						CCCACTTCCTCGGCCTCTTCC	0.572										TSP Lung(11;0.080)			13	42					0	0	0.00244969	0	0
NUDCD3	23386	broad.mit.edu	37	7	44444178	44444178	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:44444178G>T	uc003tkz.2	-	4	833	c.647C>A	c.(646-648)TCA>TAA	p.S216*	NUDCD3_uc010kye.2_RNA	NM_015332	NP_056147	Q8IVD9	NUDC3_HUMAN	NudC domain containing 3	216	CS.										0						AAGGGCCACTGAGACCTGGGG	0.552													6	49					8.12818e-05	0.000325298	0.00198382	1	0
ABCA13	154664	broad.mit.edu	37	7	48308594	48308594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:48308594C>T	uc003toq.2	+	16	2048	c.2023C>T	c.(2023-2025)CCT>TCT	p.P675S	ABCA13_uc010kyr.2_Missense_Mutation_p.P178S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	675					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TGAGGAATCTCCTTGTTTTGA	0.289													7	44					0	0	0.000157383	0	0
ABCA13	154664	broad.mit.edu	37	7	48411920	48411920	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:48411920T>A	uc003toq.2	+	33	10984	c.10959T>A	c.(10957-10959)TTT>TTA	p.F3653L	ABCA13_uc010kys.1_Missense_Mutation_p.F727L|ABCA13_uc003tos.1_Missense_Mutation_p.F479L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3653	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTTTCCTCTTTCTCTTGGATT	0.458													11	157					0	0	0.00185496	0	0
CDC14C	168448	broad.mit.edu	37	7	48964873	48964873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:48964873C>T	uc010kyv.1	+	1	717	c.605C>T	c.(604-606)TCA>TTA	p.S202L		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						GGACCTCATTCAAGAGCCAGA	0.343													12	56					0	0	0.00074312	0	0
ZNF713	349075	broad.mit.edu	37	7	56007624	56007624	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:56007624C>T	uc003trc.1	+	4	1256	c.1218C>T	c.(1216-1218)ATC>ATT	p.I406I	ZNF713_uc003tra.1_Silent_p.I419I|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	406	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			ACAGGAAAATCCATACTCGGG	0.393													7	37					0	0	0.00198382	0	0
NCF1B	654816	broad.mit.edu	37	7	72640033	72640033	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:72640033C>T	uc011kes.1	+	3	268	c.264C>T	c.(262-264)CTC>CTT	p.L88L	FKBP6_uc003twz.2_Intron|NCF1B_uc011ker.1_Silent_p.L90L	NM_000265	NP_000256			neutrophil cytosolic factor 1												0						GTCCCCACCTCCTTGACTTCT	0.512													9	20					0	0	0.000442599	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657511	72657511	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:72657511C>T	uc003txs.1	-	13	2401	c.1473G>A	c.(1471-1473)ACG>ACA	p.T491T	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						tgtcgtatttcgtcttcagga	0													32	158					0	0	0.00283554	0	0
PTPN12	5782	broad.mit.edu	37	7	77256323	77256323	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:77256323C>T	uc003ugh.2	+	13	1418	c.1327C>T	c.(1327-1329)CTC>TTC	p.L443F	PTPN12_uc011kgp.1_Missense_Mutation_p.L324F|PTPN12_uc011kgq.1_Missense_Mutation_p.L313F|PTPN12_uc010lds.2_Missense_Mutation_p.L175F	NM_002835	NP_002826	Q05209	PTN12_HUMAN	protein tyrosine phosphatase, non-receptor type	443						soluble fraction	non-membrane spanning protein tyrosine phosphatase activity|SH3 domain binding			ovary(1)|breast(1)|pancreas(1)	3						GAAGGTCCCTCTCCAAGAGGG	0.333													10	41					0	0	0.000673444	0	0
MAGI2	9863	broad.mit.edu	37	7	77885668	77885668	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:77885668A>T	uc003ugx.2	-	10	1893	c.1639T>A	c.(1639-1641)TAT>AAT	p.Y547N	MAGI2_uc003ugy.2_Missense_Mutation_p.Y547N|MAGI2_uc010ldx.1_Missense_Mutation_p.Y156N|MAGI2_uc010ldy.1_Missense_Mutation_p.Y156N|MAGI2_uc011kgr.1_Missense_Mutation_p.Y379N|MAGI2_uc011kgs.1_Missense_Mutation_p.Y384N	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	547						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				TACTCCAAATATGTTTCATAG	0.493													17	41					0	0	0.000958276	0	0
PCLO	27445	broad.mit.edu	37	7	82764399	82764399	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:82764399G>A	uc003uhx.2	-	3	2756	c.2467C>T	c.(2467-2469)CGA>TGA	p.R823*	PCLO_uc003uhv.2_Nonsense_Mutation_p.R823*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	769	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GATGCAGGTCGAGGTATGGCT	0.438													27	138					0	0	0.00106085	0	0
PCLO	27445	broad.mit.edu	37	7	82784986	82784986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:82784986G>A	uc003uhx.2	-	2	1260	c.971C>T	c.(970-972)TCA>TTA	p.S324L	PCLO_uc003uhv.2_Missense_Mutation_p.S324L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CCCAGGCTGTGATTTTTCATG	0.557													14	29					0	0	0.00244969	0	0
PCLO	27445	broad.mit.edu	37	7	82785102	82785102	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:82785102C>T	uc003uhx.2	-	2	1144	c.855G>A	c.(853-855)CAG>CAA	p.Q285Q	PCLO_uc003uhv.2_Silent_p.Q285Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	285	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTATGTCTGCCTGTTTAGTCT	0.507													12	38					0	0	0.00136819	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997054	82997054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:82997054C>T	uc003uhy.1	-	17	2642	c.2176G>A	c.(2176-2178)GAA>AAA	p.E726K		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	726					axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				CAGTATTCTTCCACTCTCTGG	0.463													25	85					0	0	0.000720815	0	0
SEMA3E	9723	broad.mit.edu	37	7	82997079	82997079	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:82997079G>A	uc003uhy.1	-	17	2617	c.2151C>T	c.(2149-2151)ATC>ATT	p.I717I		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	717					axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TGCTATAACCGATCAGCTGCA	0.473													19	70					0	0	0.00188189	0	0
ABCB4	5244	broad.mit.edu	37	7	87101970	87101970	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:87101970C>T	uc003uiv.1	-	3	178	c.102G>A	c.(100-102)ACG>ACA	p.T34T	ABCB4_uc003uiw.1_Silent_p.T34T|ABCB4_uc003uix.1_Silent_p.T34T|ABCB4_uc003uiy.2_Silent_p.T34T	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	34	Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TCACTGTCTTCGTTTTTTTCC	0.249													21	137					0	0	0.00229938	0	0
ABCB1	5243	broad.mit.edu	37	7	87196219	87196219	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:87196219G>A	uc003uiz.1	-	7	830	c.412C>T	c.(412-414)CTG>TTG	p.L138L	ABCB1_uc011khc.1_Intron	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	138	ABC transmembrane type-1 1.|Helical; (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCAGCTGCCAGGCACCAAAAT	0.428													4	50					0	0	0.00024832	0	0
ZNF804B	219578	broad.mit.edu	37	7	88966268	88966268	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:88966268C>T	uc011khi.1	+	4	4510	c.3972C>T	c.(3970-3972)TGC>TGT	p.C1324C		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	1324						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			AAGATTTTTGCCATCATTCTT	0.398										HNSCC(36;0.09)			11	47					0	0	0.000978159	0	0
ANKIB1	54467	broad.mit.edu	37	7	91936884	91936884	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:91936884G>T	uc003ulw.2	+	3	776	c.400G>T	c.(400-402)GAG>TAG	p.E134*		NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	134							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGGTGAATATGAGAGAGCAGC	0.428													13	57					1.05317e-09	4.2381e-09	0.00244969	1	0
SAMD9	54809	broad.mit.edu	37	7	92731648	92731648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:92731648G>A	uc003umf.2	-	3	4019	c.3763C>T	c.(3763-3765)CCT>TCT	p.P1255S	SAMD9_uc003umg.2_Missense_Mutation_p.P1255S	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1255						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			GTTAAATAAGGAATATAGTTT	0.289													9	131					0	0	0.000442599	0	0
SAMD9	54809	broad.mit.edu	37	7	92734352	92734352	+	Silent	SNP	C	T	T	rs145911444	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:92734352C>T	uc003umf.2	-	3	1315	c.1059G>A	c.(1057-1059)ACG>ACA	p.T353T	SAMD9_uc003umg.2_Silent_p.T353T	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	353						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTTTATTTTTCGTAATGTCCT	0.318													33	92					0	0	0.0024448	0	0
SAMD9	54809	broad.mit.edu	37	7	92734952	92734952	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:92734952C>T	uc003umf.2	-	3	715	c.459G>A	c.(457-459)AGG>AGA	p.R153R	SAMD9_uc003umg.2_Silent_p.R153R	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	153						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TGGATGGTTGCCTTTCCTTTG	0.368													23	75					0	0	0.00229938	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763278	92763278	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:92763278G>A	uc003umh.1	-	5	3223	c.2007C>T	c.(2005-2007)ATC>ATT	p.I669I	SAMD9L_uc003umj.1_Silent_p.I669I|SAMD9L_uc003umi.1_Silent_p.I669I|SAMD9L_uc010lfb.1_Silent_p.I669I|SAMD9L_uc003umk.1_Silent_p.I669I|SAMD9L_uc010lfc.1_Silent_p.I669I|SAMD9L_uc010lfd.1_Silent_p.I669I|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	669										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGTCTTTCTCGATGTCTGTCT	0.398													12	38					0	0	0.00136819	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763543	92763543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:92763543G>A	uc003umh.1	-	5	2958	c.1742C>T	c.(1741-1743)TCT>TTT	p.S581F	SAMD9L_uc003umj.1_Missense_Mutation_p.S581F|SAMD9L_uc003umi.1_Missense_Mutation_p.S581F|SAMD9L_uc010lfb.1_Missense_Mutation_p.S581F|SAMD9L_uc003umk.1_Missense_Mutation_p.S581F|SAMD9L_uc010lfc.1_Missense_Mutation_p.S581F|SAMD9L_uc010lfd.1_Missense_Mutation_p.S581F|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	581										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TGAGTTTACAGAGATACACAA	0.353													8	76					0	0	0.000274275	0	0
CASD1	64921	broad.mit.edu	37	7	94178869	94178869	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:94178869C>A	uc003uni.3	+	14	1965	c.1738C>A	c.(1738-1740)CTT>ATT	p.L580I	CASD1_uc003unj.3_Missense_Mutation_p.L580I	NM_022900	NP_075051	Q96PB1	CASD1_HUMAN	CAS1 domain containing 1 precursor	580						integral to membrane				ovary(2)	2	all_cancers(62;6.71e-10)|all_epithelial(64;5e-09)|Lung NSC(181;0.188)|all_lung(186;0.215)		STAD - Stomach adenocarcinoma(171;0.0031)			GATCTTTTCTCTTTGGCCATT	0.328													21	97					1.10923e-09	4.4618e-09	0.00278032	1	0
PON1	5444	broad.mit.edu	37	7	94931621	94931621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:94931621C>T	uc003uns.2	-	8	902	c.805G>A	c.(805-807)GAT>AAT	p.D269N	PON1_uc011kih.1_Missense_Mutation_p.D269N	NM_000446	NP_000437	P27169	PON1_HUMAN	paraoxonase 1 precursor	269		Calcium 1; catalytic.			aromatic compound catabolic process|carboxylic acid catabolic process|organophosphate catabolic process|phosphatidylcholine metabolic process|positive regulation of binding|positive regulation of cholesterol efflux|positive regulation of transporter activity|response to external stimulus	spherical high-density lipoprotein particle	aryldialkylphosphatase activity|arylesterase activity|calcium ion binding|phospholipid binding|protein homodimerization activity			pancreas(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0031)		Atorvastatin(DB01076)|Cefazolin(DB01327)	GATATGTTATCCACGAGGGTA	0.383													6	75					0	0	0.00198382	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95664990	95664990	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:95664990C>T	uc003uoc.3	+	13	1618	c.1341C>T	c.(1339-1341)TTC>TTT	p.F447F	DYNC1I1_uc003uod.3_Silent_p.F430F|DYNC1I1_uc003uob.2_Silent_p.F410F|DYNC1I1_uc003uoe.3_Silent_p.F427F|DYNC1I1_uc010lfl.2_Silent_p.F436F	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	447	WD 4.				vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			GAATGGCTTTCCCAACGGGAG	0.478													18	70					0	0	0.00074312	0	0
DLX5	1749	broad.mit.edu	37	7	96651497	96651497	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:96651497C>T	uc003uon.2	-	2	748	c.540G>A	c.(538-540)CAG>CAA	p.Q180Q	DLX5_uc011kim.1_Silent_p.Q180Q	NM_005221	NP_005212	P56178	DLX5_HUMAN	distal-less homeobox 5	180	Homeobox.				cell proliferation|endochondral ossification|osteoblast differentiation|positive regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(62;9.56e-09)|all_epithelial(64;7.38e-09)|Esophageal squamous(72;0.0125)|all_lung(186;0.0855)|Lung NSC(181;0.0858)					CCGTATTTACCTGTGTTTGTG	0.582													18	113					0	0	0.00152264	0	0
ASNS	440	broad.mit.edu	37	7	97482666	97482666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:97482666C>T	uc003uot.3	-	11	1777	c.1271G>A	c.(1270-1272)CGA>CAA	p.R424Q	ASNS_uc011kin.1_Missense_Mutation_p.R341Q|ASNS_uc003uou.3_Missense_Mutation_p.R424Q|ASNS_uc003uov.3_Missense_Mutation_p.R424Q|ASNS_uc011kio.1_Missense_Mutation_p.R403Q|ASNS_uc003uow.3_Missense_Mutation_p.R403Q|ASNS_uc003uox.3_Missense_Mutation_p.R341Q	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	424	Asparagine synthetase.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GGAAGAAAATCGATGATCTAG	0.358													14	76					0	0	0.000422831	0	0
CYP3A7	1551	broad.mit.edu	37	7	99312297	99312297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:99312297G>A	uc003uru.2	-	8	784	c.679C>T	c.(679-681)CCA>TCA	p.P227S	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	227					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					GTAAGGAATGGAAAGACTTCT	0.313													23	118					0	0	0.000878237	0	0
CYP3A4	1576	broad.mit.edu	37	7	99355843	99355843	+	Silent	SNP	C	T	T	rs28371761		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:99355843C>T	uc003urv.1	-	13	1529	c.1425G>A	c.(1423-1425)CTG>CTA	p.L475L	CYP3A4_uc003urw.1_Silent_p.L474L|CYP3A4_uc011kiz.1_Silent_p.L434L|CYP3A4_uc011kja.1_Silent_p.L426L|CYP3A4_uc011kjb.1_Silent_p.L325L	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	475					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	AGCTTAATTTCAGGGGGATCT	0.403													7	81					0	0	0.00198382	0	0
AGFG2	3268	broad.mit.edu	37	7	100151107	100151107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:100151107C>T	uc003uvf.2	+	4	705	c.569C>T	c.(568-570)GCC>GTC	p.A190V	AGFG2_uc003uvg.1_Intron|AGFG2_uc010lgy.2_Missense_Mutation_p.P52S	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	190					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						TCAGTTGCTGCCTCCACCTCG	0.552													13	45					0	0	0.00244969	0	0
FBXO24	26261	broad.mit.edu	37	7	100198450	100198451	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:100198450_100198451GG>AA	uc003uvm.1	+	10	1964_1965	c.1671_1672GG>AA	c.(1669-1674)TGGGAG>TGAAAG	p.557_558WE>*K	FBXO24_uc003uvn.1_Nonsense_Mutation_p.195_196WE>*K|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Nonsense_Mutation_p.595_596WE>*K|FBXO24_uc011kka.1_Nonsense_Mutation_p.545_546WE>*K|PCOLCE_uc011kkb.1_5'Flank|PCOLCE_uc003uvo.2_5'Flank|PCOLCE_uc010lhb.1_5'Flank	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	557_558						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ACTTCTTCTGGGAGGCCCTGGA	0.619													8	40					0	0	6.4e-05	0	0
TFR2	7036	broad.mit.edu	37	7	100229756	100229756	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:100229756G>A	uc003uvv.1	-	7	956	c.915C>T	c.(913-915)TCC>TCT	p.S305S	TFR2_uc010lhc.1_5'UTR|TFR2_uc003uvu.1_Silent_p.S134S	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	305	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GTGGGTCCTGGGAGAAGTCCG	0.612													27	67					0	0	0.00127121	0	0
EPO	2056	broad.mit.edu	37	7	100320696	100320696	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:100320696T>A	uc003uwi.2	+	5	703	c.522T>A	c.(520-522)AAT>AAA	p.N174K	EPO_uc011kkc.1_Missense_Mutation_p.N173K	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	174					blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	TCTACTCCAATTTCCTCCGGG	0.582													10	103					0	0	0.000673444	0	0
MUC17	140453	broad.mit.edu	37	7	100685187	100685187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:100685187C>T	uc003uxp.1	+	3	10543	c.10490C>T	c.(10489-10491)TCA>TTA	p.S3497L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3497	Extracellular (Potential).|Ser-rich.|57.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCAACCAATTCATCTCCTACA	0.522													39	228					0	0	0.00148497	0	0
SERPINE1	5054	broad.mit.edu	37	7	100775191	100775191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:100775191G>A	uc003uxt.2	+	4	689	c.541G>A	c.(541-543)GAC>AAC	p.D181N	SERPINE1_uc011kkj.1_Missense_Mutation_p.D166N|SERPINE1_uc003uxu.1_Missense_Mutation_p.D12N	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	181					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	AGGAGCCGTGGACCAGCTGAC	0.488													10	137					0	0	0.000673444	0	0
LRRC17	10234	broad.mit.edu	37	7	102574604	102574604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:102574604G>A	uc003vau.2	+	2	633	c.244G>A	c.(244-246)GAT>AAT	p.D82N	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_Missense_Mutation_p.D82N	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	82	LRR 1.				bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						TTGGCCTCAGGATTTGCTGCA	0.438													16	65					0	0	0.00074312	0	0
RELN	5649	broad.mit.edu	37	7	103159895	103159895	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:103159895G>A	uc003vca.2	-	49	7897	c.7737C>T	c.(7735-7737)TTC>TTT	p.F2579F	RELN_uc010liz.2_Silent_p.F2579F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2579					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		ACCCATACATGAAGTAAAATT	0.378													11	50					0	0	0.00136819	0	0
RELN	5649	broad.mit.edu	37	7	103179742	103179742	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:103179742C>T	uc003vca.2	-	45	7123	c.6963G>A	c.(6961-6963)ACG>ACA	p.T2321T	RELN_uc010liz.2_Silent_p.T2321T	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2321					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity	p.T2321T(1)		ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTTCCAAGACCGTATTACCAG	0.398													5	35					0	0	0.000602214	0	0
RELN	5649	broad.mit.edu	37	7	103206802	103206802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:103206802G>A	uc003vca.2	-	33	4965	c.4805C>T	c.(4804-4806)TCT>TTT	p.S1602F	RELN_uc010liz.2_Missense_Mutation_p.S1602F	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1602					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCCAGTTTGAGAGCTGTCATT	0.403													12	39					0	0	0.00136819	0	0
CDHR3	222256	broad.mit.edu	37	7	105662885	105662885	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:105662885G>A	uc003vdl.3	+	14	2175	c.2067G>A	c.(2065-2067)ACG>ACA	p.T689T	CDHR3_uc003vdk.2_Intron|CDHR3_uc003vdm.3_Silent_p.T676T|CDHR3_uc011klt.1_Silent_p.T601T|CDHR3_uc003vdn.2_Intron	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	689	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						TCATCACCACGACCCCCAGGG	0.517													16	127					0	0	0.00278032	0	0
LAMB1	3912	broad.mit.edu	37	7	107594168	107594168	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:107594168G>A	uc003vew.2	-	22	3221	c.2886C>T	c.(2884-2886)TAC>TAT	p.Y962Y	LAMB1_uc003vev.2_Silent_p.Y986Y	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	962	Laminin EGF-like 9.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATTGCCAAAGTATCCTGAGG	0.502													14	73					0	0	0.00074312	0	0
LAMB1	3912	broad.mit.edu	37	7	107626521	107626521	+	Missense_Mutation	SNP	G	A	A	rs142924307		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:107626521G>A	uc003vew.2	-	7	957	c.622C>T	c.(622-624)CGT>TGT	p.R208C	LAMB1_uc003vev.2_Missense_Mutation_p.R232C|LAMB1_uc003vex.2_Missense_Mutation_p.R208C|LAMB1_uc010ljn.1_Missense_Mutation_p.R294C	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	208	Laminin N-terminal.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCTAAAGCACGAAATATCACC	0.303													9	58					0	0	0.000978159	0	0
LAMB1	3912	broad.mit.edu	37	7	107626714	107626714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:107626714G>A	uc003vew.2	-	6	853	c.518C>T	c.(517-519)TCG>TTG	p.S173L	LAMB1_uc003vev.2_Missense_Mutation_p.S197L|LAMB1_uc003vex.2_Missense_Mutation_p.S173L|LAMB1_uc010ljn.1_Missense_Mutation_p.S259L	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	173	Laminin N-terminal.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GCCTGGAAACGAGGCCTCACA	0.453													9	69					0	0	0.000274275	0	0
LAMB4	22798	broad.mit.edu	37	7	107706844	107706844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:107706844C>T	uc010ljo.1	-	20	2732	c.2648G>A	c.(2647-2649)GGA>GAA	p.G883E	LAMB4_uc003vey.2_Missense_Mutation_p.G883E|LAMB4_uc010ljp.1_5'Flank	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	883	Laminin EGF-like 8.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						TGTAAAGCCTCCACAATTGAA	0.428													9	51					0	0	0.000978159	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518090	113518090	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:113518090C>T	uc010ljy.1	-	4	3088	c.3057G>A	c.(3055-3057)GAG>GAA	p.E1019E		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1019					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTTCCATATTCTCAAGAGGTT	0.383													7	43					0	0	0.00198382	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518307	113518307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:113518307G>A	uc010ljy.1	-	4	2871	c.2840C>T	c.(2839-2841)TCT>TTT	p.S947F		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	947					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TGATTTCGTAGAAATAGGTTG	0.378													5	32					0	0	0.00198382	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113520032	113520032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:113520032C>T	uc010ljy.1	-	4	1146	c.1115G>A	c.(1114-1116)AGG>AAG	p.R372K		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	372					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AGACAGAGACCTTTGGAACAA	0.388													6	68					0	0	0.000157383	0	0
TFEC	22797	broad.mit.edu	37	7	115596747	115596747	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:115596747T>G	uc003vhj.1	-	4	552	c.368A>C	c.(367-369)AAA>ACA	p.K123T	TFEC_uc003vhk.1_Missense_Mutation_p.K94T|TFEC_uc003vhl.3_Missense_Mutation_p.K94T|TFEC_uc011kmw.1_Missense_Mutation_p.K213T|TFEC_uc003vhm.1_RNA	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	123						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			AATTTCTCTTTTCATTGGTAG	0.318													6	17					0	0	0.00116845	0	0
C7orf58	79974	broad.mit.edu	37	7	120935617	120935617	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:120935617C>T	uc003vjq.3	+	23	3439	c.2992C>T	c.(2992-2994)CGA>TGA	p.R998*		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	998						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AACAAATTTTCGATCGCCATA	0.358													27	59					0	0	0.000720815	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121612634	121612634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:121612634G>A	uc003vjy.2	+	4	739	c.344G>A	c.(343-345)GGA>GAA	p.G115E	PTPRZ1_uc003vjz.2_Missense_Mutation_p.G115E	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	115	Extracellular (Potential).|Alpha-carbonic anhydrase.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						GTCAGCGGAGGAGTTTCAGAA	0.333													14	74					0	0	0.00244969	0	0
CADPS2	93664	broad.mit.edu	37	7	122194651	122194651	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:122194651G>A	uc010lkp.2	-	8	1591	c.1428C>T	c.(1426-1428)ATC>ATT	p.I476I	CADPS2_uc003vkg.3_Silent_p.I176I|CADPS2_uc010lkq.2_Silent_p.I476I	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	476					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						CTGCCAGTTTGATTTTTAAGT	0.358													7	56					0	0	0.000157383	0	0
IQUB	154865	broad.mit.edu	37	7	123152079	123152079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:123152079C>T	uc003vkn.2	-	2	893	c.316G>A	c.(316-318)GAT>AAT	p.D106N	IQUB_uc003vko.2_Missense_Mutation_p.D106N|IQUB_uc010lkt.2_RNA|IQUB_uc003vkp.1_Missense_Mutation_p.D106N|IQUB_uc003vkq.2_Missense_Mutation_p.D106N	NM_178827	NP_849149	Q8NA54	IQUB_HUMAN	IQ motif and ubiquitin domain containing	106										ovary(3)|large_intestine(1)	4						AAACTATCATCATTTGGCCTC	0.373													10	98					0	0	0.000673444	0	0
GRM8	2918	broad.mit.edu	37	7	126883142	126883142	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:126883142G>A	uc003vlr.2	-	1	428	c.117C>T	c.(115-117)TCC>TCT	p.S39S	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.S39S|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	39	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CCACCCGTATGGAATGGGCAT	0.532										HNSCC(24;0.065)			9	56					0	0	0.000673444	0	0
GRM8	2918	broad.mit.edu	37	7	126883213	126883213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:126883213G>A	uc003vlr.2	-	1	357	c.46C>T	c.(46-48)CTC>TTC	p.L16F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.L16F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	16					negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GCGGTCAAGAGGAAGAAACAA	0.478										HNSCC(24;0.065)	OREG0003802	type=REGULATORY REGION|Gene=GRM8|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	52					0	0	0.00116845	0	0
CCDC136	64753	broad.mit.edu	37	7	128450282	128450282	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:128450282G>A	uc003vnv.1	+	12	2257	c.1890G>A	c.(1888-1890)CAG>CAA	p.Q630Q	CCDC136_uc003vnu.1_Intron|CCDC136_uc003vnw.1_Intron|CCDC136_uc003vnx.1_Silent_p.Q446Q|CCDC136_uc010llq.1_5'UTR|CCDC136_uc003vny.1_Silent_p.Q240Q	NM_022742	NP_073579	Q96JN2	CC136_HUMAN	coiled-coil domain containing 136	630						integral to membrane	protein binding			ovary(2)	2						AGCTGATACAGAACCAAGACT	0.473													6	23					0	0	0.000157383	0	0
CPA5	93979	broad.mit.edu	37	7	129986407	129986407	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:129986407C>T	uc010lmd.1	+	4	701	c.81C>T	c.(79-81)ATC>ATT	p.I27I	CPA5_uc003vps.2_Silent_p.I27I|CPA5_uc003vpt.2_Silent_p.I27I|CPA5_uc010lme.1_Silent_p.I27I|CPA5_uc003vpu.1_Silent_p.I27I	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	27					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					TCAGCTTTATCCTGGCAGCAG	0.642													24	53					0	0	0.001512	0	0
TSGA13	114960	broad.mit.edu	37	7	130364052	130364053	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:130364052_130364053GG>TT	uc003vqi.2	-	5	784_785	c.327_328CC>AA	c.(325-330)ACCCAG>ACAAAG	p.Q110K	TSGA13_uc003vqj.2_Missense_Mutation_p.Q110K	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	110										ovary(2)	2	Melanoma(18;0.0435)					TTGTCTTGCTGGGTGATTGAGC	0.436													14	566					0	0	6.4e-05	0	0
PODXL	5420	broad.mit.edu	37	7	131195648	131195648	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:131195648A>G	uc003vqw.3	-	2	903	c.645T>C	c.(643-645)AGT>AGC	p.S215S	PODXL_uc003vqx.3_Silent_p.S215S	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	215	Thr-rich.|Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					CAGTGCTTGAACTGCTTGAAA	0.517													7	47					0	0	0.000157383	0	0
LRGUK	136332	broad.mit.edu	37	7	133861759	133861759	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:133861759T>C	uc003vrm.1	+	9	1067	c.1051T>C	c.(1051-1053)TTT>CTT	p.F351L		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	351	LRRCT.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CTTCGTAATTTTTATGCTTCT	0.338													11	145					0	0	0.000978159	0	0
LRGUK	136332	broad.mit.edu	37	7	133884016	133884016	+	Silent	SNP	C	T	T	rs61749958		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:133884016C>T	uc003vrm.1	+	14	1606	c.1590C>T	c.(1588-1590)ATC>ATT	p.I530I		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	530	Guanylate kinase-like.						ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CTCGTTATATCCTGGTGGTGC	0.368													27	114					0	0	0.001512	0	0
SLC35B4	84912	broad.mit.edu	37	7	133979816	133979816	+	Silent	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:133979816C>G	uc003vrn.2	-	10	1089	c.765G>C	c.(763-765)CGG>CGC	p.R255R	SLC35B4_uc010lmk.2_Silent_p.R119R|SLC35B4_uc010lml.1_Intron	NM_032826	NP_116215	Q969S0	S35B4_HUMAN	solute carrier family 35, member B4	255	Helical; (Potential).					Golgi membrane|integral to membrane	UDP-N-acetylglucosamine transmembrane transporter activity|UDP-xylose transmembrane transporter activity			skin(1)	1						TAAACACACCCCGGATGCACA	0.517													4	145					0	0	0.00116845	0	0
PTN	5764	broad.mit.edu	37	7	136938300	136938300	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:136938300C>A	uc003vtq.2	-	3	563	c.200G>T	c.(199-201)CGG>CTG	p.R67L	PTN_uc010lmx.2_Missense_Mutation_p.R67L|PTN_uc003vtr.1_Missense_Mutation_p.R67L	NM_002825	NP_002816	P21246	PTN_HUMAN	pleiotrophin	67					nervous system development|positive regulation of cell division|positive regulation of cell proliferation|transmembrane receptor protein tyrosine phosphatase signaling pathway	endoplasmic reticulum|extracellular space	growth factor activity|heparin binding|protein phosphatase inhibitor activity			upper_aerodigestive_tract(1)|pancreas(1)	2						AGTGCCCTCCCGTGTGCCCAG	0.522													6	57					0.00116845	0.00464689	0.00116845	1	0
DGKI	9162	broad.mit.edu	37	7	137092656	137092656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:137092656C>T	uc003vtt.2	-	31	2910	c.2909G>A	c.(2908-2910)GGC>GAC	p.G970D	DGKI_uc003vtu.2_Missense_Mutation_p.G639D	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	970	ANK 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CTCCCCGTTGCCGGTTTTAGC	0.428													9	84					0	0	0.000274275	0	0
TRIM24	8805	broad.mit.edu	37	7	138239558	138239558	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:138239558C>T	uc003vuc.2	+	9	1592	c.1377C>T	c.(1375-1377)TTC>TTT	p.F459F	TRIM24_uc003vub.2_Silent_p.F459F	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	459					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						TATCCAAGTTCCCAACACAGA	0.498													20	67					0	0	0.00152264	0	0
SVOPL	136306	broad.mit.edu	37	7	138305866	138305866	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:138305866C>T	uc011kqh.1	-	13	1278	c.1278G>A	c.(1276-1278)ACG>ACA	p.T426T	SVOPL_uc003vue.2_Silent_p.T274T	NM_001139456	NP_001132928	Q8N434	SVOPL_HUMAN	SVOP-like isoform 1	426						integral to membrane	transmembrane transporter activity				0						AAGCGCGCATCGTGGTGGGGT	0.602													5	17					0	0	0.00116845	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138418922	138418922	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:138418922G>A	uc003vuf.2	-	15	1888	c.1650C>T	c.(1648-1650)GTC>GTT	p.V550V	ATP6V0A4_uc003vug.2_Silent_p.V550V|ATP6V0A4_uc003vuh.2_Silent_p.V550V	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	550	Helical; (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						AAACCATCTGGACAATTCCCA	0.423													6	74					0	0	0.00198382	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138444533	138444533	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:138444533G>A	uc003vuf.2	-	7	841	c.603C>T	c.(601-603)TTC>TTT	p.F201F	ATP6V0A4_uc003vug.2_Silent_p.F201F|ATP6V0A4_uc003vuh.2_Silent_p.F201F	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	201	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						CCATCTCACTGAACTTCAAGT	0.547													8	41					0	0	0.000157383	0	0
MKRN1	23608	broad.mit.edu	37	7	140156574	140156574	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:140156574G>A	uc003vvt.2	-	5	1089	c.864C>T	c.(862-864)GTC>GTT	p.V288V	MKRN1_uc003vvs.2_Silent_p.V224V|MKRN1_uc011krd.1_Silent_p.V22V|MKRN1_uc003vvv.3_Silent_p.V288V|MKRN1_uc003vvu.3_Silent_p.V224V	NM_013446	NP_038474	Q9UHC7	MKRN1_HUMAN	makorin ring finger protein 1 isoform 1	288	RING-type.						ligase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.00956)					CTTTCTCATAGACCACCTCCA	0.552													6	44					0	0	0.00198382	0	0
BRAF	673	broad.mit.edu	37	7	140439656	140439656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:140439656C>T	uc003vwc.3	-	17	2144	c.2083G>A	c.(2083-2085)GAG>AAG	p.E695K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	695	Protein kinase.				activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TTGAGGCACTCTGCCATTAAT	0.408		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				18	85					0	0	0.00121646	0	0
BRAF	673	broad.mit.edu	37	7	140453134	140453134	+	Missense_Mutation	SNP	T	C	C	rs121913377		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:140453134T>C	uc003vwc.3	-	15	1862	c.1801A>G	c.(1801-1803)AAA>GAA	p.K601E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	601	Protein kinase.		K -> Q (in CFC syndrome).|K -> E (in colorectal cancer).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.K601E(47)|p.V600_K601>E(8)|p.K601N(7)|p.K601del(4)|p.K601Q(3)|p.T599_R603>I(2)|p.V600_W604del(1)|p.K601K(1)|p.K601L(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.K601I(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	CATCGAGATTTCACTGTAGCT	0.368		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				16	55					0	0	0.00152264	0	0
TAS2R3	50831	broad.mit.edu	37	7	141464517	141464517	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:141464517C>T	uc003vwp.1	+	1	621	c.559C>T	c.(559-561)CTG>TTG	p.L187L		NM_016943	NP_058639	Q9NYW6	TA2R3_HUMAN	taste receptor T2R3	187	Helical; Name=5; (Potential).				sensory perception of taste		taste receptor activity			central_nervous_system(1)	1	Melanoma(164;0.0171)					TCTTGGGACTCTGTGGTACCT	0.498													11	23					0	0	0.00136819	0	0
OR9A4	130075	broad.mit.edu	37	7	141619083	141619083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:141619083G>A	uc003vwu.1	+	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					ACATCATTATGAACAGACACA	0.458													18	159					0	0	0.00152264	0	0
CLEC5A	23601	broad.mit.edu	37	7	141630000	141630000	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:141630000C>T	uc003vwv.1	-	7	668	c.471G>A	c.(469-471)CAG>CAA	p.Q157Q	CLEC5A_uc011krm.1_Missense_Mutation_p.R133K|CLEC5A_uc003vww.1_Silent_p.Q156Q|CLEC5A_uc010lnq.1_Silent_p.Q134Q|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	157	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					AGTTGAAATTCTGATTCTGAT	0.353													18	66					0	0	0.00152264	0	0
MGAM	8972	broad.mit.edu	37	7	141797419	141797419	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:141797419C>T	uc003vwy.2	+	43	5085	c.5031C>T	c.(5029-5031)TTC>TTT	p.F1677F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1677	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTGCATATTTCCCTAGAGCCC	0.299													12	48					0	0	0.00244969	0	0
EPHB6	2051	broad.mit.edu	37	7	142565365	142565365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:142565365G>A	uc011kst.1	+	12	2537	c.1750G>A	c.(1750-1752)GAG>AAG	p.E584K	EPHB6_uc011ksu.1_Missense_Mutation_p.E584K|EPHB6_uc003wbs.2_Missense_Mutation_p.E292K|EPHB6_uc003wbt.2_Missense_Mutation_p.E58K|EPHB6_uc003wbu.2_Missense_Mutation_p.E292K|EPHB6_uc003wbv.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	584	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TCCCCCAGGGGAGCTGTCTTC	0.627													4	25					0	0	0.00116845	0	0
OR9A2	135924	broad.mit.edu	37	7	142723341	142723341	+	Silent	SNP	G	A	A	rs79423237		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:142723341G>A	uc003wcc.1	-	1	879	c.879C>T	c.(877-879)GTC>GTT	p.V293V		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					GGGCCTCTTTGACTTTGTCAT	0.438													42	101					0	0	0.000781405	0	0
TAS2R39	259285	broad.mit.edu	37	7	142881444	142881444	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:142881444G>A	uc011ksw.1	+	1	933	c.933G>A	c.(931-933)CTG>CTA	p.L311L		NM_176881	NP_795362	P59534	T2R39_HUMAN	taste receptor, type 2, member 39	311	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1	Melanoma(164;0.059)					CAATTCTACTGATTCAAGATA	0.473													5	17					0	0	0.00198382	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919456	142919456	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:142919456C>T	uc011ksx.1	+	1	285	c.285C>T	c.(283-285)ATC>ATT	p.I95I		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	95	Extracellular (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					CAGTGTATATCCTCTTCAAAG	0.398													8	111					0	0	0.000442599	0	0
TAS2R40	259286	broad.mit.edu	37	7	142919549	142919549	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:142919549C>T	uc011ksx.1	+	1	378	c.378C>T	c.(376-378)TTC>TTT	p.F126F		NM_176882	NP_795363	P59535	T2R40_HUMAN	taste receptor, type 2, member 40	126	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			ovary(1)	1	Melanoma(164;0.059)					TTGCAAACTTCAATCATCCTT	0.418													12	150					0	0	0.00136819	0	0
CLCN1	1180	broad.mit.edu	37	7	143016847	143016847	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143016847G>A	uc003wcr.1	+	2	268	c.181_splice	c.e2-1	p.I61_splice	CLCN1_uc011ktc.1_Splice_Site|CLCN1_uc003wcs.1_5'Flank|CLCN1_uc010lox.1_5'Flank|CLCN1_uc010loy.1_5'Flank	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle						muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TCTCTGTCCAGATTTATGGCC	0.463													28	114					0	0	0.00106085	0	0
FAM115C	285966	broad.mit.edu	37	7	143421619	143421619	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143421619C>T	uc003wdf.2	+	7	2417	c.2334C>T	c.(2332-2334)ACC>ACT	p.T778T	FAM115C_uc003wdg.2_Silent_p.T497T|FAM115C_uc011ktk.1_Silent_p.T778T|FAM115C_uc003wdh.2_Silent_p.T778T|FAM115C_uc011ktm.1_Silent_p.T778T|uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|FAM115C_uc011ktt.1_Silent_p.T674T|FAM115C_uc003wdi.1_Silent_p.T497T	NM_001130025	NP_001123497	A6NFQ2	F115C_HUMAN	hypothetical protein LOC285966 isoform A	778											0						CTGAGGCCACCTGTAACCTTT	0.607													5	13					0	0	0.000602214	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453518	143453518	+	Missense_Mutation	SNP	C	T	T	rs17855659		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143453518C>T	uc003wdk.3	-	1	1326	c.1234G>A	c.(1234-1236)GAA>AAA	p.E412K	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	412	Potential.			E -> G (in Ref. 2; BC043153).		integral to membrane					0	Melanoma(164;0.0903)					TTCTCTTCTTCCTCTATTCGG	0.373													26	172					0	0	0.000720815	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453552	143453552	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143453552C>T	uc003wdk.3	-	1	1292	c.1200G>A	c.(1198-1200)AGG>AGA	p.R400R	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	400	Potential.					integral to membrane					0	Melanoma(164;0.0903)					CTGTTAATTTCCTATAGAGTT	0.348													7	145					0	0	0.00198382	0	0
OR2F1	26211	broad.mit.edu	37	7	143657068	143657068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143657068G>A	uc003wds.1	+	1	49	c.5G>A	c.(4-6)GGA>GAA	p.G2E		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					ATTTTAATGGGAACAGATAAC	0.393													19	76					0	0	0.00152264	0	0
OR2F1	26211	broad.mit.edu	37	7	143657992	143657992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143657992G>A	uc003wds.1	+	1	973	c.929G>A	c.(928-930)GGG>GAG	p.G310E		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	310	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					AAATTCTCTGGGTTAACATCA	0.428													5	33					0	0	0.000602214	0	0
OR2A5	393046	broad.mit.edu	37	7	143748358	143748358	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143748358G>A	uc011ktw.1	+	1	864	c.864G>A	c.(862-864)TTG>TTA	p.L288L		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					TGAACCCCTTGATCTATAGCC	0.527													11	71					0	0	0.000308642	0	0
OR2A5	393046	broad.mit.edu	37	7	143748373	143748373	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143748373G>A	uc011ktw.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					ATAGCCTGAGGAACGCAGAGG	0.527													7	70					0	0	0.000442599	0	0
OR2A12	346525	broad.mit.edu	37	7	143792644	143792644	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143792644G>A	uc011kty.1	+	1	444	c.444G>A	c.(442-444)TGG>TGA	p.W148*		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					CAACTTGCTGGATATTTAGCT	0.443													18	132					0	0	0.00074312	0	0
OR2A7	401427	broad.mit.edu	37	7	143956632	143956632	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:143956632G>A	uc011kuc.1	-	1	90	c.90C>T	c.(88-90)TTC>TTT	p.F30F	OR2A9P_uc003wec.1_Intron|OR2A7_uc003wef.2_3'UTR	NM_001005328	NP_001005328	Q96R45	OR2A7_HUMAN	olfactory receptor, family 2, subfamily A,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.14)					AGAACAGGGAGAAGAGCCCAA	0.537													6	79					0	0	0.000442599	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146825839	146825839	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:146825839A>T	uc003weu.1	+	7	1510	c.994A>T	c.(994-996)AAT>TAT	p.N332Y		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	332	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CAGTAGAAAGAATTTCAAAGG	0.398										HNSCC(39;0.1)			12	79					0	0	0.00185496	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146997310	146997310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:146997310G>A	uc003weu.1	+	9	1942	c.1426G>A	c.(1426-1428)GGA>AGA	p.G476R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	476	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CACCATCGATGGAGATGAAGC	0.423										HNSCC(39;0.1)			7	77					0	0	0.00198382	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147914561	147914561	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:147914561C>T	uc003weu.1	+	19	3708	c.3192C>T	c.(3190-3192)CTC>CTT	p.L1064L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1064	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCTGCATTCTCCTCTACATCA	0.567										HNSCC(39;0.1)			27	87					0	0	0.00106085	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148112601	148112601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:148112601G>A	uc003weu.1	+	24	4405	c.3889G>A	c.(3889-3891)GAA>AAA	p.E1297K	CNTNAP2_uc003wev.1_Missense_Mutation_p.E74K	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1297	Cytoplasmic (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CCATACCAACGAAGCAAAGGG	0.552										HNSCC(39;0.1)			13	58					0	0	0.00185496	0	0
SSPO	23145	broad.mit.edu	37	7	149498848	149498848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:149498848C>T	uc010lpk.2	+	51	7300	c.7300C>T	c.(7300-7302)CCT>TCT	p.P2434S		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2434					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			TATGTGGCTCCCTTCTCTCCC	0.597													6	22					0	0	0.00198382	0	0
C7orf29	113763	broad.mit.edu	37	7	150027532	150027532	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150027532G>A	uc003wgy.2	+	1	595	c.39G>A	c.(37-39)CTG>CTA	p.L13L	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	13										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			AGGCCTCTCTGAGCCAGGTGC	0.642													25	86					0	0	0.00178596	0	0
GIMAP8	155038	broad.mit.edu	37	7	150163938	150163938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150163938G>A	uc003whj.2	+	2	482	c.152G>A	c.(151-153)AGA>AAA	p.R51K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	51						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		ATGTGCCAGAGAGAGAGTTGG	0.468													13	112					0	0	0.000422831	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174749	150174749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150174749G>A	uc003whj.2	+	5	2209	c.1879G>A	c.(1879-1881)GAA>AAA	p.E627K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	627	Potential.					endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		TCTGAGAAAAGAAAGTGGGTG	0.443													16	94					0	0	0.000566183	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269236	150269236	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150269236C>T	uc003whl.2	+	3	160	c.78C>T	c.(76-78)CCC>CCT	p.P26P	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Silent_p.P40P	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	26							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCAAGAGCCCAGAAATTCCC	0.468													11	63					0	0	0.000978159	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325208	150325208	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150325208G>A	uc003whn.2	-	3	902	c.478C>T	c.(478-480)CTG>TTG	p.L160L	GIMAP6_uc003whm.2_Silent_p.L80L	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	160							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGAACACCAGGATGGTGTGA	0.617													14	68					0	0	0.000422831	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417662	150417662	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150417662C>T	uc003whq.2	+	3	657	c.570C>T	c.(568-570)AAC>AAT	p.N190N	GIMAP1_uc003whp.2_Silent_p.N198N	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	190	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCTTTGATAACCGGGCCACCG	0.677													6	36					0	0	0.00198382	0	0
TMEM176B	28959	broad.mit.edu	37	7	150489176	150489176	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150489176G>A	uc003wht.3	-	6	854	c.688C>T	c.(688-690)CGA>TGA	p.R230*	TMEM176B_uc003whu.3_Nonsense_Mutation_p.R230*|TMEM176B_uc003whv.3_Nonsense_Mutation_p.R193*|TMEM176B_uc003whw.3_Nonsense_Mutation_p.R230*	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	230					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CACAAGTTTCGAAGACCTACT	0.572													8	26					0	0	0.000274275	0	0
KCNH2	3757	broad.mit.edu	37	7	150649761	150649761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150649761C>T	uc003wic.2	-	6	1322	c.1309G>A	c.(1309-1311)GAA>AAA	p.E437K	KCNH2_uc003wib.2_Missense_Mutation_p.E97K|KCNH2_uc011kux.1_Missense_Mutation_p.E341K|KCNH2_uc003wid.2_Missense_Mutation_p.E97K|KCNH2_uc003wie.2_Missense_Mutation_p.E437K	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	437	Extracellular (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	GGGCCTTCTTCCGTCTCCTTC	0.597													18	65					0	0	0.00188189	0	0
NOS3	4846	broad.mit.edu	37	7	150695451	150695451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:150695451G>A	uc003wif.2	+	6	885	c.589G>A	c.(589-591)GAT>AAT	p.D197N	NOS3_uc011kuy.1_5'UTR|NOS3_uc011kuz.1_Missense_Mutation_p.D197N|NOS3_uc011kva.1_Missense_Mutation_p.D197N|NOS3_uc011kvb.1_Missense_Mutation_p.D197N	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	197	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	TCAGGTGTTCGATGCCCGGGA	0.617													6	27					0	0	0.000442599	0	0
MLL3	58508	broad.mit.edu	37	7	151873959	151873959	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:151873959G>T	uc003wla.2	-	38	8798	c.8579C>A	c.(8578-8580)TCA>TAA	p.S2860*	MLL3_uc003wkz.2_Nonsense_Mutation_p.S1921*|MLL3_uc003wky.2_Nonsense_Mutation_p.S369*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2860					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTTAGGTCTGAGTGAGCAGA	0.403			N		medulloblastoma								8	162					0.000157383	0.000629335	0.000157383	1	0
MLL3	58508	broad.mit.edu	37	7	151945151	151945151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:151945151C>T	uc003wla.2	-	14	2587	c.2368G>A	c.(2368-2370)GAC>AAC	p.D790N		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	790					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GAAGGCAAGTCTGAAGAAGGT	0.423			N		medulloblastoma								8	448					0	0	0.000274275	0	0
NOM1	64434	broad.mit.edu	37	7	156752864	156752864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:156752864C>T	uc003wmy.2	+	4	1643	c.1628C>T	c.(1627-1629)ACC>ATC	p.T543I	NOM1_uc010lqp.1_5'Flank	NM_138400	NP_612409	Q5C9Z4	NOM1_HUMAN	nucleolar protein with MIF4G domain 1	543	MIF4G.				RNA metabolic process	nucleolus	protein binding				0	Ovarian(565;0.218)	all_hematologic(28;0.0749)	OV - Ovarian serous cystadenocarcinoma(82;0.00301)	UCEC - Uterine corpus endometrioid carcinoma (81;0.169)		CAGGACCAGACCAGGGTACGC	0.478													16	71					0	0	0.00074312	0	0
UBE3C	9690	broad.mit.edu	37	7	156974326	156974326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:156974326C>T	uc010lqs.2	+	7	1043	c.731C>T	c.(730-732)CCA>CTA	p.P244L	UBE3C_uc003wnf.2_Missense_Mutation_p.P201L|UBE3C_uc003wng.2_Missense_Mutation_p.P244L	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	244					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		GTTCTAAAACCATTGCACTTT	0.353													7	119					0	0	0.000274275	0	0
PTPRN2	5799	broad.mit.edu	37	7	157341643	157341643	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:157341643C>T	uc003wno.2	-	22	3094	c.2973G>A	c.(2971-2973)ACG>ACA	p.T991T	PTPRN2_uc003wnp.2_Silent_p.T974T|PTPRN2_uc003wnq.2_Silent_p.T962T|PTPRN2_uc003wnr.2_Silent_p.T953T|PTPRN2_uc011kwa.1_Silent_p.T1014T|PTPRN2_uc003wnn.2_RNA	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	991	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		ACAGTACCTTCGTCTGGACCA	0.572													12	58					0	0	0.00185496	0	0
PTPRN2	5799	broad.mit.edu	37	7	157341681	157341681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:157341681C>T	uc003wno.2	-	22	3056	c.2935G>A	c.(2935-2937)GAG>AAG	p.E979K	PTPRN2_uc003wnp.2_Missense_Mutation_p.E962K|PTPRN2_uc003wnq.2_Missense_Mutation_p.E950K|PTPRN2_uc003wnr.2_Missense_Mutation_p.E941K|PTPRN2_uc011kwa.1_Missense_Mutation_p.E1002K|PTPRN2_uc003wnn.2_RNA	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	979	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		CTCAAGTGCTCCAGGGTCGCT	0.547													10	87					0	0	0.00136819	0	0
PTPRN2	5799	broad.mit.edu	37	7	157997862	157997862	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:157997862C>T	uc003wno.2	-	4	501	c.380_splice	c.e4+1	p.R127_splice	PTPRN2_uc003wnp.2_Splice_Site_p.R110_splice|PTPRN2_uc003wnq.2_Splice_Site_p.R127_splice|PTPRN2_uc003wnr.2_Splice_Site_p.R89_splice|PTPRN2_uc011kwa.1_Splice_Site_p.R150_splice	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N							integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		TCCACACTTACCTGGCTGGGC	0.483													12	61					0	0	0.00136819	0	0
NCAPG2	54892	broad.mit.edu	37	7	158439232	158439232	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr7:158439232G>A	uc003wnv.1	-	25	3244	c.3099C>T	c.(3097-3099)ACC>ACT	p.T1033T	NCAPG2_uc010lqu.1_Silent_p.T778T|NCAPG2_uc003wnw.1_RNA|NCAPG2_uc003wnx.1_Silent_p.T1033T|NCAPG2_uc011kwe.1_Silent_p.T1033T|NCAPG2_uc011kwc.1_Silent_p.T487T|NCAPG2_uc011kwd.1_Silent_p.T476T	NM_017760	NP_060230	Q86XI2	CNDG2_HUMAN	leucine zipper protein 5	1033					cell division|chromosome condensation|mitosis	nucleus	methylated histone residue binding			ovary(1)|breast(1)|kidney(1)	3	Ovarian(565;0.152)	all_cancers(7;3.44e-11)|all_epithelial(9;3.05e-05)|all_hematologic(28;0.014)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.187)|STAD - Stomach adenocarcinoma(7;0.18)		GCTCTGGAGGGGTAAGCTCTT	0.363													8	50					0	0	0.000442599	0	0
CSMD1	64478	broad.mit.edu	37	8	2813223	2813223	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:2813223G>A	uc011kwk.1	-	64	10275	c.9885C>T	c.(9883-9885)TTC>TTT	p.F3295F	CSMD1_uc011kwj.1_Silent_p.F2624F|CSMD1_uc010lrg.2_Silent_p.F1186F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3295	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGTGTAGCCGAAAGTAGGAA	0.502													14	63					0	0	0.00185496	0	0
CSMD1	64478	broad.mit.edu	37	8	2910116	2910116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:2910116C>T	uc011kwk.1	-	50	7921	c.7531G>A	c.(7531-7533)GAG>AAG	p.E2511K	CSMD1_uc011kwj.1_Missense_Mutation_p.E1840K|CSMD1_uc010lrg.2_Missense_Mutation_p.E579K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2511	Extracellular (Potential).|Sushi 15.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AAAGTGAACTCGTTCCCGGTA	0.438													6	16					0	0	0.00198382	0	0
CSMD1	64478	broad.mit.edu	37	8	3256953	3256953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:3256953C>T	uc011kwk.1	-	16	2758	c.2368G>A	c.(2368-2370)GAA>AAA	p.E790K	CSMD1_uc011kwj.1_Missense_Mutation_p.E182K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	790	Extracellular (Potential).|CUB 5.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGTTTTGCTTCAATTATCCAT	0.408													10	90					0	0	0.000673444	0	0
MCPH1	79648	broad.mit.edu	37	8	6479056	6479056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:6479056C>T	uc003wqi.2	+	13	2364	c.2296C>T	c.(2296-2298)CCT>TCT	p.P766S	uc003wqm.2_RNA	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	766	BRCT 3.					microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		GTTTGTCTCGCCTGCCAGCAG	0.657													5	18					0	0	0.000602214	0	0
XKR5	389610	broad.mit.edu	37	8	6679433	6679433	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:6679433G>A	uc003wqp.2	-	5	787	c.765C>T	c.(763-765)TTC>TTT	p.F255F	XKR5_uc003wqq.2_Silent_p.F92F|XKR5_uc003wqr.1_RNA	NM_207411	NP_997294	Q6UX68	XKR5_HUMAN	XK-related protein 5a	255	Helical; (Potential).					integral to membrane					0			STAD - Stomach adenocarcinoma(24;0.0984)	READ - Rectum adenocarcinoma(644;0.137)|COAD - Colon adenocarcinoma(149;0.166)		GGCTGTCCCAGAAGCTGAGGT	0.507													4	15					0	0	0.00024832	0	0
RP1L1	94137	broad.mit.edu	37	8	10467464	10467464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:10467464C>T	uc003wtc.2	-	4	4373	c.4144G>A	c.(4144-4146)GAA>AAA	p.E1382K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1382					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGTCCTCCTTCTGGCCCTTCT	0.403													19	203					0	0	0.00152264	0	0
SLC7A2	6542	broad.mit.edu	37	8	17406292	17406292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:17406292G>A	uc011kyc.1	+	4	807	c.638G>A	c.(637-639)GGA>GAA	p.G213E	SLC7A2_uc011kyd.1_Missense_Mutation_p.G253E|SLC7A2_uc011kye.1_Missense_Mutation_p.G253E|SLC7A2_uc011kyf.1_Missense_Mutation_p.G213E	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	213	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	TTTGTGAAAGGAAATGTGGCA	0.358													15	128					0	0	0.000308642	0	0
MTUS1	57509	broad.mit.edu	37	8	17611335	17611335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:17611335C>T	uc003wxv.2	-	2	2456	c.1982G>A	c.(1981-1983)AGG>AAG	p.R661K	MTUS1_uc010lsy.2_RNA|MTUS1_uc003wxw.2_Missense_Mutation_p.R661K|MTUS1_uc010lsz.2_Missense_Mutation_p.R661K	NM_001001924	NP_001001924	Q9ULD2	MTUS1_HUMAN	mitochondrial tumor suppressor 1 isoform 1	661						Golgi apparatus|microtubule|microtubule organizing center|mitochondrion|nucleus|plasma membrane|spindle				ovary(1)|skin(1)	2				Colorectal(111;0.0778)		AGGGCTAATCCTATCAATGTT	0.383													6	59					0	0	0.00116845	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23049378	23049378	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:23049378C>T	uc003xda.2	-	10	1301	c.1236G>A	c.(1234-1236)CTG>CTA	p.L412L		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	412	Cytoplasmic (Potential).|Death.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		CCCATTTCATCAGCATTGCAT	0.537													11	96					0	0	0.000422831	0	0
ADAM28	10863	broad.mit.edu	37	8	24167450	24167450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:24167450G>A	uc003xdy.2	+	3	277	c.194G>A	c.(193-195)GGA>GAA	p.G65E	ADAM28_uc003xdx.2_Missense_Mutation_p.G65E|ADAM28_uc011kzz.1_5'UTR|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	65					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ACAATTAATGGAAAAATTGCA	0.294													9	74					0	0	0.000442599	0	0
ADRA1A	148	broad.mit.edu	37	8	26722292	26722292	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:26722292G>A	uc003xfh.1	-	1	631	c.195C>T	c.(193-195)ATC>ATT	p.I65I	ADRA1A_uc003xfc.1_Silent_p.I65I|ADRA1A_uc010lul.1_Silent_p.I65I|ADRA1A_uc003xfd.1_RNA|ADRA1A_uc003xfe.1_Silent_p.I65I|ADRA1A_uc010lum.1_Silent_p.I65I|ADRA1A_uc003xff.1_RNA|ADRA1A_uc003xfg.1_Silent_p.I65I	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	65	Helical; Name=2; (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	CCAGGTTGACGATGTAGTAGT	0.602													10	120					0	0	0.000442599	0	0
TEX15	56154	broad.mit.edu	37	8	30704856	30704856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:30704856C>T	uc003xil.2	-	1	1678	c.1678G>A	c.(1678-1680)GAA>AAA	p.E560K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	560										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		ATGGTATCTTCTTCACTCTCT	0.353													6	62					0	0	0.000157383	0	0
GINS4	84296	broad.mit.edu	37	8	41397251	41397251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:41397251G>A	uc003xnx.2	+	5	562	c.352G>A	c.(352-354)GAG>AAG	p.E118K	GINS4_uc003xny.2_Missense_Mutation_p.E118K	NM_032336	NP_115712	Q9BRT9	SLD5_HUMAN	GINS complex subunit 4	118					DNA strand elongation involved in DNA replication|S phase of mitotic cell cycle	cytoplasm|nucleoplasm				skin(1)	1	Ovarian(28;0.014)|Colorectal(14;0.0202)|Lung SC(25;0.211)	all_lung(54;0.00732)|Lung NSC(58;0.0207)|Hepatocellular(245;0.0462)|Esophageal squamous(32;0.0844)	Colorectal(10;0.0014)|OV - Ovarian serous cystadenocarcinoma(14;0.00329)|LUSC - Lung squamous cell carcinoma(45;0.0137)|COAD - Colon adenocarcinoma(11;0.0147)			TCCTGAGGGGGAGCCTTCCAG	0.517													6	60					0	0	0.00198382	0	0
OPRK1	4986	broad.mit.edu	37	8	54141974	54141974	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:54141974C>T	uc003xrh.1	-	3	1401	c.1026G>A	c.(1024-1026)CGG>CGA	p.R342R	OPRK1_uc003xri.1_Silent_p.R342R|OPRK1_uc010lyc.1_Silent_p.R253R	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	342	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AGCAGAAGTCCCGGAAACACC	0.493													7	44					0	0	0.000157383	0	0
XKR4	114786	broad.mit.edu	37	8	56015353	56015353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:56015353G>A	uc003xsf.2	+	1	337	c.305G>A	c.(304-306)AGG>AAG	p.R102K		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	102						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CGCCTGGGCAGGGAGCAGCGG	0.463													6	24					0	0	0.00116845	0	0
SDR16C5	195814	broad.mit.edu	37	8	57218273	57218273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:57218273G>A	uc003xsy.1	-	6	1357	c.719C>T	c.(718-720)TCT>TTT	p.S240F	SDR16C5_uc010lyk.1_Missense_Mutation_p.S240F|SDR16C5_uc010lyl.1_Missense_Mutation_p.S196F	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	240					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGGCAACAGAGAAGGACAGCT	0.289													10	104					0	0	0.000442599	0	0
NSMAF	8439	broad.mit.edu	37	8	59536305	59536305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:59536305G>A	uc003xtt.2	-	7	633	c.419C>T	c.(418-420)CCC>CTC	p.P140L	NSMAF_uc011lee.1_Missense_Mutation_p.P171L|NSMAF_uc003xtu.2_Missense_Mutation_p.P140L	NM_003580	NP_003571	Q92636	FAN_HUMAN	neutral sphingomyelinase (N-SMase) activation	140					ceramide metabolic process	cytoplasm|soluble fraction	protein binding|receptor signaling protein activity			ovary(1)	1		all_lung(136;0.174)|Lung NSC(129;0.2)				CACTTTCCCGGGAACATCCAA	0.373													4	34					0	0	0.000602214	0	0
ASPH	444	broad.mit.edu	37	8	62430127	62430127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:62430127G>A	uc003xuj.2	-	24	2355	c.2086C>T	c.(2086-2088)CCC>TCC	p.P696S	ASPH_uc011leg.1_Missense_Mutation_p.P667S	NM_004318	NP_004309	Q12797	ASPH_HUMAN	aspartate beta-hydroxylase isoform a	696	Lumenal (Potential).				muscle contraction	integral to endoplasmic reticulum membrane	calcium ion binding|electron carrier activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity|structural constituent of muscle			ovary(3)	3	Lung SC(2;0.153)	Lung NSC(129;0.0358)|all_lung(136;0.0654)|all_epithelial(80;0.101)			L-Aspartic Acid(DB00128)|Succinic acid(DB00139)	CCTTCCTTGGGAATCACCAAG	0.527													10	68					0	0	0.00136819	0	0
GGH	8836	broad.mit.edu	37	8	63939816	63939816	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:63939816A>G	uc003xuw.2	-	4	567	c.284T>C	c.(283-285)TTC>TCC	p.F95S		NM_003878	NP_003869	Q92820	GGH_HUMAN	gamma-glutamyl hydrolase precursor	95	Gamma-glutamyl hydrolase.				glutamine metabolic process	extracellular space|lysosome|melanosome	gamma-glutamyl-peptidase activity				0	Breast(64;0.0716)	all_cancers(86;0.189)|Lung NSC(129;0.0324)|all_lung(136;0.0593)|all_epithelial(80;0.131)			Folic Acid(DB00158)|L-Glutamic Acid(DB00142)	TCCTCCAGGGAAAAGGATTCT	0.348													12	106					0	0	0.00136819	0	0
CYP7B1	9420	broad.mit.edu	37	8	65528373	65528373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:65528373C>T	uc003xvj.2	-	3	929	c.725G>A	c.(724-726)AGA>AAA	p.R242K		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	242					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AATTTTCTCTCTAATAGACTT	0.328													5	94					0	0	0.00116845	0	0
DNAJC5B	85479	broad.mit.edu	37	8	66992626	66992626	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:66992626C>T	uc003xvs.1	+	5	639	c.348C>T	c.(346-348)ATC>ATT	p.I116I	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	116					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			TGTTTGTCATCGTTGGCCTCT	0.423													15	38					0	0	0.000566183	0	0
TRIM55	84675	broad.mit.edu	37	8	67047381	67047381	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:67047381G>A	uc003xvv.2	+	3	724	c.498G>A	c.(496-498)CAG>CAA	p.Q166Q	TRIM55_uc003xvu.2_Silent_p.Q166Q|TRIM55_uc003xvw.2_Silent_p.Q166Q|TRIM55_uc003xvx.2_Silent_p.Q166Q	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	166						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			ATGTGTTCCAGAGACAGAAGG	0.592													9	59					0	0	0.000442599	0	0
NCOA2	10499	broad.mit.edu	37	8	71068906	71068906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:71068906G>A	uc003xyn.1	-	11	1856	c.1694C>T	c.(1693-1695)TCC>TTC	p.S565F		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	565					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			ATTAACTGGGGAGTTTTGCAA	0.507			T	RUNXBP2	AML								14	52					0	0	0.000308642	0	0
LY96	23643	broad.mit.edu	37	8	74917080	74917080	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:74917080G>A	uc003yad.2	+	2	253	c.162G>A	c.(160-162)TTG>TTA	p.L54L		NM_015364	NP_056179	Q9Y6Y9	LY96_HUMAN	MD-2 protein precursor	54					cellular defense response|detection of lipopolysaccharide|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	extracellular space|lipopolysaccharide receptor complex|plasma membrane	coreceptor activity|lipopolysaccharide receptor activity|protein binding				0	Breast(64;0.0311)		Epithelial(68;0.0208)|BRCA - Breast invasive adenocarcinoma(89;0.0499)|all cancers(69;0.0619)			GTATAGAATTGAAAAGATCCA	0.269													33	140					0	0	0.00128727	0	0
HNF4G	3174	broad.mit.edu	37	8	76459898	76459898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:76459898G>A	uc003yaq.2	+	4	493	c.223G>A	c.(223-225)GCG>ACG	p.A75T	HNF4G_uc003yap.1_Missense_Mutation_p.A75T|HNF4G_uc003yar.2_Missense_Mutation_p.A112T	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	75	Nuclear receptor.				endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			GTGTTTTAGAGCGGGAATGAA	0.294													23	117					0	0	0.00229938	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766737	77766737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:77766737C>T	uc003yav.2	+	10	7832	c.7445C>T	c.(7444-7446)CCG>CTG	p.P2482L	ZFHX4_uc003yau.1_Missense_Mutation_p.P2527L|ZFHX4_uc003yaw.1_Missense_Mutation_p.P2482L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2482						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTTCACTCTCCGTTCTTGGAA	0.507										HNSCC(33;0.089)			12	112					0	0	0.00244969	0	0
RALYL	138046	broad.mit.edu	37	8	85774624	85774624	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:85774624G>A	uc003ycq.3	+	7	923	c.507G>A	c.(505-507)GGG>GGA	p.G169G	RALYL_uc003ycr.3_Silent_p.G169G|RALYL_uc003ycs.3_Silent_p.G169G|RALYL_uc010lzy.2_Silent_p.G158G|RALYL_uc003yct.3_Silent_p.G182G|RALYL_uc003ycu.3_Silent_p.G96G|RALYL_uc003ycv.3_Silent_p.G81G	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	169							identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						CTCGCAGGGGGAAAGGAGTCT	0.473													5	11					0	0	0.000602214	0	0
LRRCC1	85444	broad.mit.edu	37	8	86027487	86027487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:86027487C>T	uc003ycw.2	+	5	851	c.697C>T	c.(697-699)CCC>TCC	p.P233S	LRRCC1_uc010lzz.1_Intron|LRRCC1_uc010maa.1_Intron|LRRCC1_uc003ycx.2_Missense_Mutation_p.P140S|LRRCC1_uc003ycy.2_Missense_Mutation_p.P213S	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	233					cell division|mitosis	centriole|nucleus					0						TTCTGATTCTCCCCTAAATAT	0.279													7	75					0	0	0.00198382	0	0
CA3	761	broad.mit.edu	37	8	86356323	86356323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:86356323G>A	uc003ydj.2	+	4	495	c.412G>A	c.(412-414)GAT>AAT	p.D138N	CA3_uc011lfv.1_RNA	NM_005181	NP_005172	P07451	CAH3_HUMAN	carbonic anhydrase III	138					one-carbon metabolic process	cytoplasm	carbonate dehydratase activity|zinc ion binding				0						GAAGCAGCGCGATGGGATCGC	0.383													7	62					0	0	0.000157383	0	0
SLC7A13	157724	broad.mit.edu	37	8	87242252	87242252	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:87242252C>T	uc003ydq.1	-	1	353	c.255G>A	c.(253-255)AAG>AAA	p.K85K	SLC7A13_uc003ydr.1_Silent_p.K85K	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	85	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						CAAAGTATCTCTTGAGAAAAT	0.478													5	26					0	0	0.00116845	0	0
SLC26A7	115111	broad.mit.edu	37	8	92346659	92346659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:92346659C>T	uc003yex.2	+	7	1057	c.779C>T	c.(778-780)CCT>CTT	p.P260L	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.P260L|SLC26A7_uc003yfa.2_Missense_Mutation_p.P260L	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	260	Helical; (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			GTTGTTCTTCCTGTAGATTTA	0.363													4	17					0	0	0.000602214	0	0
RUNX1T1	862	broad.mit.edu	37	8	93017381	93017381	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:93017381C>T	uc003yfd.2	-	5	787	c.703G>A	c.(703-705)GAT>AAT	p.D235N	RUNX1T1_uc003yfc.1_Missense_Mutation_p.D208N|RUNX1T1_uc003yfe.1_Missense_Mutation_p.D198N|RUNX1T1_uc010mao.2_Missense_Mutation_p.D208N|RUNX1T1_uc011lgi.1_Missense_Mutation_p.D246N|RUNX1T1_uc003yfb.1_Missense_Mutation_p.D198N|RUNX1T1_uc003yff.1_Missense_Mutation_p.D198N	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	235					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TCGTTCACATCGAGAAGCAGC	0.552													21	74					0	0	0.00047179	0	0
INTS8	55656	broad.mit.edu	37	8	95862268	95862269	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:95862268_95862269CC>AA	uc003yhb.2	+	12	1582_1583	c.1456_1457CC>AA	c.(1456-1458)CCT>AAT	p.P486N	INTS8_uc003yha.1_Missense_Mutation_p.P486N|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.P313N	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	486					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GAAGAGATCCCCTAGAGTAAAT	0.391													15	404					0	0	6.4e-05	0	0
PGCP	10404	broad.mit.edu	37	8	98041631	98041631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:98041631G>A	uc003yhw.2	+	6	1128	c.962G>A	c.(961-963)GGG>GAG	p.G321E		NM_016134	NP_057218	Q9Y646	PGCP_HUMAN	plasma glutamate carboxypeptidase precursor	321					peptide metabolic process|proteolysis	cytoplasm|extracellular space	metal ion binding|metallocarboxypeptidase activity			upper_aerodigestive_tract(1)	1	Breast(36;1.86e-05)					ATTTTCCCAGGGCTGCGTCCA	0.423													5	19					0	0	0.00198382	0	0
RGS22	26166	broad.mit.edu	37	8	101076245	101076245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:101076245G>A	uc003yjb.1	-	8	946	c.751C>T	c.(751-753)CAC>TAC	p.H251Y	RGS22_uc003yja.1_Missense_Mutation_p.H70Y|RGS22_uc003yjc.1_Missense_Mutation_p.H239Y|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	251					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GTCCTAGGGTGAACTCCATCA	0.259													17	249					0	0	0.00152264	0	0
SNX31	169166	broad.mit.edu	37	8	101624270	101624270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:101624270C>T	uc003yjr.2	-	7	720	c.569G>A	c.(568-570)GGA>GAA	p.G190E	SNX31_uc011lha.1_5'UTR|SNX31_uc011lhb.1_Missense_Mutation_p.G91E	NM_152628	NP_689841	Q8N9S9	SNX31_HUMAN	sorting nexin 31	190					cell communication|protein transport		phosphatidylinositol binding				0	all_cancers(14;4.01e-05)|all_epithelial(15;1.26e-07)|Lung NSC(17;0.000453)|all_lung(17;0.00125)		Epithelial(11;1.21e-11)|all cancers(13;2.62e-09)|OV - Ovarian serous cystadenocarcinoma(57;3.22e-06)|STAD - Stomach adenocarcinoma(118;0.206)			CTCAGAACTTCCAAGACTAAC	0.443													8	96					0	0	0.000442599	0	0
NACAP1	83955	broad.mit.edu	37	8	102381390	102381390	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:102381390C>T	uc003ykc.1	+	1	270	c.253C>T	c.(253-255)CAA>TAA	p.Q85*	NACAP1_uc010mbs.1_RNA	NR_002182				SubName: Full=NACAP1 protein;												0						ACTGGGTCTTCAACAGGTTAC	0.458													17	78					0	0	0.000958276	0	0
UBR5	51366	broad.mit.edu	37	8	103271215	103271215	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:103271215G>A	uc003ykr.1	-	57	8132	c.8099C>T	c.(8098-8100)TCA>TTA	p.S2700L	UBR5_uc003yks.1_Missense_Mutation_p.S2699L|UBR5_uc003ykq.2_Missense_Mutation_p.S211L	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2700	HECT.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TGTCCTACCTGATTCATCATT	0.343													12	45					0	0	0.00185496	0	0
RIMS2	9699	broad.mit.edu	37	8	104928669	104928669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:104928669G>A	uc003yls.2	+	6	1515	c.1274G>A	c.(1273-1275)AGA>AAA	p.R425K	RIMS2_uc003ylp.2_Missense_Mutation_p.R647K|RIMS2_uc003ylw.2_Missense_Mutation_p.R455K|RIMS2_uc003ylq.2_Missense_Mutation_p.R455K|RIMS2_uc003ylr.2_Missense_Mutation_p.R502K|RIMS2_uc003ylt.2_Missense_Mutation_p.R48K|RIMS2_uc003ylu.1_Missense_Mutation_p.R38K|RIMS2_uc003ylv.1_Missense_Mutation_p.R38K	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	725	PDZ.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TGGAATGGAAGACTACTGCAA	0.358										HNSCC(12;0.0054)			17	36					0	0	0.00121646	0	0
TM7SF4	81501	broad.mit.edu	37	8	105361478	105361478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:105361478G>A	uc003ylx.1	+	2	747	c.698G>A	c.(697-699)CGA>CAA	p.R233Q		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	233					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			TTCATGAAGCGATTTTTGGGC	0.498													9	85					0	0	0.000442599	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813820	106813820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:106813820C>T	uc003ymd.2	+	8	1533	c.1510C>T	c.(1510-1512)CCC>TCC	p.P504S	ZFPM2_uc011lhs.1_Missense_Mutation_p.P235S	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	504					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GTTTTCTTTCCCCCAAGATAT	0.507													6	93					0	0	0.00198382	0	0
ZFPM2	23414	broad.mit.edu	37	8	106815429	106815429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:106815429G>A	uc003ymd.2	+	8	3142	c.3119G>A	c.(3118-3120)GGA>GAA	p.G1040E	ZFPM2_uc011lhs.1_Missense_Mutation_p.G771E	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	1040					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AAAAATCGAGGAATGGTAATA	0.473													4	24					0	0	0.000602214	0	0
TRHR	7201	broad.mit.edu	37	8	110131356	110131356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:110131356C>T	uc003ymz.3	+	2	885	c.869C>T	c.(868-870)TCA>TTA	p.S290L		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	290	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GTTGTCAACTCATTTCTCTCC	0.418													7	50					0	0	0.000157383	0	0
SYBU	55638	broad.mit.edu	37	8	110631156	110631156	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:110631156C>T	uc003ynj.3	-	3	505	c.342G>A	c.(340-342)AAG>AAA	p.K114K	SYBU_uc003yni.3_Silent_p.K111K|SYBU_uc003ynk.3_5'UTR|SYBU_uc010mco.2_Silent_p.K113K|SYBU_uc003ynl.3_Silent_p.K113K|SYBU_uc010mcp.2_Silent_p.K114K|SYBU_uc010mcq.2_Silent_p.K114K|SYBU_uc003yno.3_5'UTR|SYBU_uc010mcr.2_Silent_p.K114K|SYBU_uc003ynm.3_Silent_p.K113K|SYBU_uc003ynn.3_Silent_p.K113K|SYBU_uc010mcs.2_5'UTR|SYBU_uc010mct.2_Silent_p.K114K|SYBU_uc010mcu.2_Silent_p.K113K|SYBU_uc003ynp.3_Silent_p.K46K|SYBU_uc010mcv.2_Silent_p.K114K	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	114	Sufficient for interaction with KIF5B.|Ser-rich.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						TCGTGCATTTCTTTCTGGTGA	0.483													26	149					0	0	0.00106085	0	0
CSMD3	114788	broad.mit.edu	37	8	113246706	113246706	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:113246706C>G	uc003ynu.2	-	68	10787	c.10628G>C	c.(10627-10629)GGG>GCG	p.G3543A	CSMD3_uc003yns.2_Missense_Mutation_p.G2745A|CSMD3_uc003ynt.2_Missense_Mutation_p.G3503A|CSMD3_uc011lhx.1_Missense_Mutation_p.G3374A	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3543	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTTATATACCCCTGTAAAATG	0.308										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			4	122					0	0	0.000602214	0	0
TRPS1	7227	broad.mit.edu	37	8	116599617	116599617	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:116599617C>T	uc003ynz.2	-	4	2731	c.2272G>A	c.(2272-2274)GAG>AAG	p.E758K	TRPS1_uc011lhy.1_Missense_Mutation_p.E762K|TRPS1_uc003yny.2_Missense_Mutation_p.E771K|TRPS1_uc010mcy.2_Missense_Mutation_p.E758K	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	758	Mediates interaction with GLI3.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			GAAACTGGCTCTCCCATTTTA	0.493									Langer-Giedion_syndrome				15	190					0	0	0.000566183	0	0
MTBP	27085	broad.mit.edu	37	8	121518961	121518961	+	Silent	SNP	T	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:121518961T>C	uc003ypc.1	+	16	1788	c.1743T>C	c.(1741-1743)CCT>CCC	p.P581P		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	581	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			GTTCATTACCTCATTCATCTG	0.393													10	29					0	0	0.000442599	0	0
FAM83A	84985	broad.mit.edu	37	8	124206335	124206335	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:124206335C>T	uc003ypv.2	+	4	2734	c.720C>T	c.(718-720)ATC>ATT	p.I240I	FAM83A_uc003ypw.2_Silent_p.I240I|FAM83A_uc003ypy.2_Silent_p.I184I|FAM83A_uc003ypx.2_Silent_p.I240I|FAM83A_uc003ypz.2_Silent_p.I240I	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	240										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CTGGCCAAATCCGGGAGAAGT	0.488													7	52					0	0	0.000274275	0	0
FER1L6	654463	broad.mit.edu	37	8	125094666	125094666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:125094666G>A	uc003yqw.2	+	33	4564	c.4358G>A	c.(4357-4359)CGA>CAA	p.R1453Q	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1453	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AGCAAACACCGAGCCATCTGT	0.498													31	66					0	0	0.0024448	0	0
TG	7038	broad.mit.edu	37	8	133984964	133984964	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:133984964C>T	uc003ytw.2	+	34	6218	c.6177C>T	c.(6175-6177)CCC>CCT	p.P2059P	TG_uc010mdw.2_Silent_p.P818P|TG_uc011ljb.1_Silent_p.P428P|TG_uc011ljc.1_Silent_p.P213P	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2059	Type IIIB.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACACCTATCCCTTCGGATGGT	0.473													10	90					0	0	0.000442599	0	0
TG	7038	broad.mit.edu	37	8	134108506	134108506	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:134108506C>T	uc003ytw.2	+	43	7502	c.7461C>T	c.(7459-7461)TTC>TTT	p.F2487F	TG_uc010mdw.2_Silent_p.F1246F|TG_uc011ljb.1_Silent_p.F856F|TG_uc011ljc.1_Silent_p.F620F|SLA_uc003ytz.2_Intron|SLA_uc011lje.1_Intron|SLA_uc011ljf.1_Intron|SLA_uc011ljg.1_Intron|SLA_uc010mea.2_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2487					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ATGGCCACTTCCTCCGTGAGC	0.532													15	140					0	0	0.00244969	0	0
TG	7038	broad.mit.edu	37	8	134125787	134125787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:134125787C>T	uc003ytw.2	+	44	7735	c.7694C>T	c.(7693-7695)TCT>TTT	p.S2565F	TG_uc010mdw.2_Missense_Mutation_p.S1324F|TG_uc011ljb.1_Missense_Mutation_p.S934F|TG_uc011ljc.1_Missense_Mutation_p.S698F	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2565					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TGGTATTACTCTCTGGAGCAC	0.562													14	25					0	0	0.000566183	0	0
FAM135B	51059	broad.mit.edu	37	8	139164725	139164725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:139164725C>T	uc003yuy.2	-	13	2164	c.1993G>A	c.(1993-1995)GAG>AAG	p.E665K	FAM135B_uc003yux.2_Missense_Mutation_p.E566K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.E227K|FAM135B_uc003yvb.2_Missense_Mutation_p.E227K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	665										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TCCTCCTGCTCTTCTGTGTGA	0.507										HNSCC(54;0.14)			20	72					0	0	0.00047179	0	0
FAM135B	51059	broad.mit.edu	37	8	139164741	139164741	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:139164741C>T	uc003yuy.2	-	13	2148	c.1977G>A	c.(1975-1977)AAG>AAA	p.K659K	FAM135B_uc003yux.2_Silent_p.K560K|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.K221K|FAM135B_uc003yvb.2_Silent_p.K221K	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	659										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGTGAGAGTCCTTTAGGGAAG	0.493										HNSCC(54;0.14)			5	79					0	0	0.000602214	0	0
FAM135B	51059	broad.mit.edu	37	8	139207549	139207549	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:139207549C>T	uc003yuy.2	-	9	996	c.825G>A	c.(823-825)GAG>GAA	p.E275E	FAM135B_uc003yux.2_Silent_p.E176E|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	275										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CAGCAAGGGCCTCTAGAAAGA	0.403										HNSCC(54;0.14)			23	80					0	0	0.000720815	0	0
FLJ43860	389690	broad.mit.edu	37	8	142490441	142490441	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:142490441C>T	uc003ywi.2	-	7	939	c.858G>A	c.(856-858)AAG>AAA	p.K286K	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	286							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			TGGGGCTCACCTTCTCAGGGG	0.627													6	14					0	0	0.00198382	0	0
C8orf31	286122	broad.mit.edu	37	8	144130625	144130625	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:144130625G>A	uc003yxp.1	+	5	708	c.356_splice	c.e5-1	p.G119_splice	C8orf31_uc003yxq.1_Splice_Site|C8orf31_uc003yxr.1_Splice_Site	NM_173687	NP_775958	Q8N9H6	CH031_HUMAN	hypothetical protein LOC286122											ovary(1)	1	all_cancers(97;1.89e-10)|all_epithelial(106;8.73e-09)|Lung NSC(106;0.000161)|all_lung(105;0.000447)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					tgtcattgcaggattctctcg	0													12	40					0	0	0.00185496	0	0
FAM83H	286077	broad.mit.edu	37	8	144808726	144808726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:144808726G>A	uc003yzk.2	-	5	2974	c.2905C>T	c.(2905-2907)CTT>TTT	p.L969F	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	969					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			AGCTGCCTAAGACGCAAGGAG	0.701													6	21					0	0	0.000157383	0	0
OPLAH	26873	broad.mit.edu	37	8	145112601	145112601	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr8:145112601A>C	uc003zar.3	-	10	1254	c.1172T>G	c.(1171-1173)GTG>GGG	p.V391G	OPLAH_uc003zas.1_5'Flank|OPLAH_uc003zat.1_Missense_Mutation_p.S216R	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	391							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	AGCATCCGTCACTGTCACAGG	0.662													5	26					0	0	0.00198382	0	0
GLIS3	169792	broad.mit.edu	37	9	4118625	4118625	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:4118625T>A	uc003zhw.1	-	3	582	c.388A>T	c.(388-390)AGT>TGT	p.S130C	GLIS3_uc003zhx.1_Missense_Mutation_p.S285C|GLIS3_uc003zic.1_Missense_Mutation_p.S285C|GLIS3_uc003zie.1_Missense_Mutation_p.S285C|GLIS3_uc010mhh.1_Missense_Mutation_p.S160C|GLIS3_uc003zid.1_Missense_Mutation_p.S63C|GLIS3_uc010mhi.1_Missense_Mutation_p.S92C|GLIS3_uc003zif.1_Missense_Mutation_p.S63C|GLIS3_uc003zig.1_Missense_Mutation_p.S129C|GLIS3_uc003zih.1_Missense_Mutation_p.S63C|GLIS3_uc003zhy.1_Missense_Mutation_p.S63C|GLIS3_uc003zhz.1_Missense_Mutation_p.S63C|GLIS3_uc003zib.1_Missense_Mutation_p.S129C|GLIS3_uc010mhg.1_Missense_Mutation_p.S63C	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	130	Ser-rich.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		TGCCGAGGACTAGGGTAAGGA	0.547													13	94					0	0	0.000422831	0	0
JAK2	3717	broad.mit.edu	37	9	5089711	5089711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:5089711C>T	uc010mhm.2	+	19	2722	c.2609C>T	c.(2608-2610)CCT>CTT	p.P870L	JAK2_uc003ziw.2_Missense_Mutation_p.P870L	NM_004972	NP_004963	O60674	JAK2_HUMAN	Janus kinase 2	870	Protein kinase 2.				actin filament polymerization|activation of caspase activity by protein phosphorylation|activation of JAK2 kinase activity|blood coagulation|cellular component movement|erythrocyte differentiation|interferon-gamma-mediated signaling pathway|interleukin-12-mediated signaling pathway|JAK-STAT cascade involved in growth hormone signaling pathway|mammary gland epithelium development|mesoderm development|negative regulation of cell proliferation|negative regulation of DNA binding|positive regulation of apoptosis|positive regulation of cell-substrate adhesion|positive regulation of growth hormone receptor signaling pathway|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tumor necrosis factor production|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|protein autophosphorylation|regulation of inflammatory response|regulation of interferon-gamma-mediated signaling pathway|response to antibiotic|response to lipopolysaccharide|STAT protein import into nucleus|tumor necrosis factor-mediated signaling pathway|tyrosine phosphorylation of STAT protein	caveola|cytoskeleton|cytosol|endomembrane system|nucleus	ATP binding|growth hormone receptor binding|heme binding|histone binding|histone kinase activity (H3-Y41 specific)|interleukin-12 receptor binding|non-membrane spanning protein tyrosine kinase activity|protein kinase binding|SH2 domain binding		PCM1/JAK2(30)|PAX5/JAK2(18)|ETV6/JAK2(11)|BCR/JAK2(6)|SSBP2/JAK2(4)|SEC31A/JAK2(4)	haematopoietic_and_lymphoid_tissue(28629)|lung(5)|breast(5)|ovary(1)|liver(1)	28641	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0198)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0237)|Lung(218;0.133)		CGGTATGACCCTCTACAGGAC	0.403		1	T|Mis|O	ETV6|PCM1|BCR	ALL|AML|MPD| CML				Polycythemia_Vera_Familial				10	52					0	0	0.000978159	0	0
INSL4	3641	broad.mit.edu	37	9	5233821	5233821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:5233821C>T	uc003ziy.2	+	2	469	c.364C>T	c.(364-366)CCA>TCA	p.P122S		NM_002195	NP_002186	Q14641	INSL4_HUMAN	insulin-like 4 precursor	122					cell proliferation|cell-cell signaling|female pregnancy|multicellular organismal development|signal transduction	extracellular space|soluble fraction	hormone activity|insulin-like growth factor receptor binding				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.14)		CAGATTTGATCCATTCTGTTG	0.383													8	28					0	0	0.000274275	0	0
CD274	29126	broad.mit.edu	37	9	5456165	5456165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:5456165G>A	uc003zje.2	+	2	104	c.52G>A	c.(52-54)GCA>ACA	p.A18T	C9orf46_uc003zjd.2_Intron|CD274_uc011lmb.1_Missense_Mutation_p.A18T|CD274_uc010mhn.2_RNA|CD274_uc003zjf.2_Missense_Mutation_p.A18T	NM_014143	NP_054862	Q9NZQ7	PD1L1_HUMAN	CD274 molecule precursor	18					cell proliferation|cell surface receptor linked signaling pathway|immune response|T cell costimulation	endomembrane system|integral to membrane	receptor activity			lung(1)|central_nervous_system(1)	2	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000742)|Lung(218;0.111)		TTTGCTGAACGGTAAGACACC	0.313			T	CIITA	PMBL|Hodgkin Lymphona|								14	49					0	0	0.000422831	0	0
PTPRD	5789	broad.mit.edu	37	9	8389365	8389365	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:8389365C>G	uc003zkk.2	-	36	4964	c.4253G>C	c.(4252-4254)GGG>GCG	p.G1418A	PTPRD_uc003zkp.2_Missense_Mutation_p.G1012A|PTPRD_uc003zkq.2_Missense_Mutation_p.G1011A|PTPRD_uc003zkr.2_Missense_Mutation_p.G1002A|PTPRD_uc003zks.2_Missense_Mutation_p.G1011A|PTPRD_uc003zkl.2_Missense_Mutation_p.G1409A|PTPRD_uc003zkm.2_Missense_Mutation_p.G1405A|PTPRD_uc003zkn.2_Missense_Mutation_p.G1007A|PTPRD_uc003zko.2_Missense_Mutation_p.G1008A	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1418	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTTCCTATACCCATCTATGTA	0.458										TSP Lung(15;0.13)			8	40					0	0	0.000157383	0	0
MPDZ	8777	broad.mit.edu	37	9	13119539	13119539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:13119539G>A	uc010mia.1	-	38	5398	c.5341C>T	c.(5341-5343)CGT>TGT	p.R1781C	MPDZ_uc003zkx.3_Missense_Mutation_p.R46C|MPDZ_uc003zky.3_Missense_Mutation_p.R315C|MPDZ_uc010mib.2_Missense_Mutation_p.R486C|MPDZ_uc010mhx.2_Missense_Mutation_p.R603C|MPDZ_uc011lmm.1_Missense_Mutation_p.R640C|MPDZ_uc003zkz.3_Missense_Mutation_p.R474C|MPDZ_uc010mhy.2_Missense_Mutation_p.R1781C|MPDZ_uc010mhz.2_Missense_Mutation_p.R1748C|MPDZ_uc011lmn.1_Missense_Mutation_p.R1748C|MPDZ_uc003zlb.3_Missense_Mutation_p.R1781C	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1781	PDZ 11.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GTGGCATTACGAACGTCTTCC	0.393													18	84					0	0	0.000958276	0	0
FREM1	158326	broad.mit.edu	37	9	14748556	14748556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:14748556C>T	uc003zlm.2	-	31	6229	c.5639G>A	c.(5638-5640)GGG>GAG	p.G1880E	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Missense_Mutation_p.G416E	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1880					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGAGGAAGACCCTGGGGGCAG	0.542													9	93					0	0	0.000673444	0	0
FREM1	158326	broad.mit.edu	37	9	14801666	14801666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:14801666C>T	uc003zlm.2	-	20	4268	c.3678G>A	c.(3676-3678)ATG>ATA	p.M1226I	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1226	CSPG 8.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGAGGAGTTCCATGGAAAAGC	0.378													8	28					0	0	0.000673444	0	0
FREM1	158326	broad.mit.edu	37	9	14851493	14851493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:14851493G>A	uc003zlm.2	-	6	1531	c.941C>T	c.(940-942)TCC>TTC	p.S314F	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	314	CSPG 1.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TGTAGTCAAGGAGGTCAGGAT	0.483													16	74					0	0	0.00074312	0	0
C9orf93	203238	broad.mit.edu	37	9	15591488	15591488	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:15591488C>T	uc003zmd.2	+	5	792	c.477C>T	c.(475-477)ATC>ATT	p.I159I	C9orf93_uc010mih.1_Silent_p.I159I|C9orf93_uc003zme.2_Silent_p.I66I|C9orf93_uc011lmu.1_Silent_p.I159I|C9orf93_uc003zmc.2_Silent_p.I159I	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	159	Potential.|Glu-rich.										0				GBM - Glioblastoma multiforme(50;4.84e-07)		ACAATATGATCCAAAATTGCA	0.313													11	62					0	0	0.00244969	0	0
TAF1L	138474	broad.mit.edu	37	9	32632916	32632916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:32632916G>A	uc003zrg.1	-	1	2752	c.2662C>T	c.(2662-2664)CGT>TGT	p.R888C	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	888					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GTTGGTAAACGAAAATCAGAC	0.478													21	91					0	0	0.00047179	0	0
TAF1L	138474	broad.mit.edu	37	9	32633276	32633276	+	Missense_Mutation	SNP	G	A	A	rs149009358		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:32633276G>A	uc003zrg.1	-	1	2392	c.2302C>T	c.(2302-2304)CGT>TGT	p.R768C	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	768					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		ACTGGAGCACGAAAAAGGTTG	0.413													10	58					0	0	0.000442599	0	0
C9orf131	138724	broad.mit.edu	37	9	35043984	35043984	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:35043984G>A	uc003zvw.2	+	2	1387	c.1358G>A	c.(1357-1359)TGG>TAG	p.W453*	C9orf131_uc003zvu.2_Nonsense_Mutation_p.W405*|C9orf131_uc003zvv.2_Nonsense_Mutation_p.W380*|C9orf131_uc003zvx.2_Nonsense_Mutation_p.W418*	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	453											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			GAGACACCATGGAAGGGCATG	0.537													12	44					0	0	0.00185496	0	0
C9orf131	138724	broad.mit.edu	37	9	35045503	35045503	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:35045503G>A	uc003zvw.2	+	2	2906	c.2877G>A	c.(2875-2877)GGG>GGA	p.G959G	C9orf131_uc003zvu.2_Silent_p.G911G|C9orf131_uc003zvv.2_Silent_p.G886G|C9orf131_uc003zvx.2_Silent_p.G924G	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	959											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			ATAGAAGAGGGACTGCAAGGT	0.537													6	57					0	0	0.00198382	0	0
OR13J1	392309	broad.mit.edu	37	9	35870314	35870314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:35870314G>A	uc011lph.1	-	1	85	c.85C>T	c.(85-87)CCT>TCT	p.P29S		NM_001004487	NP_001004487	Q8NGT2	O13J1_HUMAN	olfactory receptor, family 13, subfamily J,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_epithelial(49;0.169)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00494)|STAD - Stomach adenocarcinoma(86;0.194)			GAGCACAGAGGGAAGAGCAGA	0.552													6	23					0	0	0.000157383	0	0
PAX5	5079	broad.mit.edu	37	9	36966612	36966612	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:36966612G>A	uc003zzo.1	-	6	1162	c.714C>T	c.(712-714)GAC>GAT	p.D238D	PAX5_uc011lpt.1_Silent_p.D15D|PAX5_uc011lpu.1_Intron|PAX5_uc011lpv.1_Intron|PAX5_uc011lpw.1_Silent_p.D238D|PAX5_uc011lpx.1_Silent_p.D172D|PAX5_uc011lpy.1_Silent_p.D130D|PAX5_uc010mls.1_Silent_p.D238D|PAX5_uc011lpz.1_Silent_p.D195D|PAX5_uc011lqa.1_Silent_p.D130D|PAX5_uc010mlq.1_RNA|PAX5_uc011lqb.1_RNA|PAX5_uc010mlo.1_Silent_p.D238D|PAX5_uc010mlp.1_Silent_p.D238D|PAX5_uc011lqc.1_Silent_p.D195D|PAX5_uc010mlr.1_Silent_p.D238D	NM_016734	NP_057953	Q02548	PAX5_HUMAN	paired box 5	238					cell differentiation|humoral immune response|nervous system development|organ morphogenesis|spermatogenesis|transcription from RNA polymerase II promoter	nucleus	DNA binding	p.?(22)	PAX5/JAK2(18)	haematopoietic_and_lymphoid_tissue(142)|lung(3)|central_nervous_system(2)	147		all_cancers(2;3.46e-10)|Acute lymphoblastic leukemia(2;7.09e-56)|all_hematologic(2;6.65e-44)		GBM - Glioblastoma multiforme(29;0.0108)		CAAACACGCGGTCCAGCACCT	0.622			T|Mis|D|F|S	IGH@|ETV6|PML|FOXP1|ZNF521|ELN	NHL|ALL|B-ALL								6	18					0	0	0.00116845	0	0
ZCCHC7	84186	broad.mit.edu	37	9	37126554	37126554	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:37126554C>T	uc003zzq.2	+	2	398	c.225C>T	c.(223-225)ATC>ATT	p.I75I	ZCCHC7_uc011lqh.1_Intron|ZCCHC7_uc011lqi.1_Silent_p.I74I|ZCCHC7_uc010mlt.2_Silent_p.I74I|ZCCHC7_uc003zzs.1_Silent_p.I74I	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	75							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		AGAAGCTAATCGTCCTTTCAG	0.408													13	137					0	0	0.00244969	0	0
FRMPD1	22844	broad.mit.edu	37	9	37708410	37708410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:37708410G>A	uc004aag.1	+	4	318	c.274G>A	c.(274-276)GGC>AGC	p.G92S	FRMPD1_uc004aah.1_Missense_Mutation_p.G92S	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	92	PDZ.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CTCTGCTCACGGCAAGCTTTT	0.488													15	68					0	0	0.00121646	0	0
PGM5	5239	broad.mit.edu	37	9	71114251	71114251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:71114251C>T	uc004agr.2	+	10	1817	c.1588C>T	c.(1588-1590)CCC>TCC	p.P530S		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	530					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						CGAGAGGGATCCCAGCGGCCA	0.572													6	22					0	0	0.00198382	0	0
MAMDC2	256691	broad.mit.edu	37	9	72659125	72659125	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:72659125G>A	uc004ahm.2	+	1	629	c.12G>A	c.(10-12)AGG>AGA	p.R4R	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	4						endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						TGCTGTTAAGGGGCGTCCTCC	0.677													5	12					0	0	0.00198382	0	0
RORB	6096	broad.mit.edu	37	9	77277467	77277467	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:77277467G>A	uc004aji.2	+	6	919	c.870G>A	c.(868-870)CGG>CGA	p.R290R	RORB_uc004ajh.2_Silent_p.R279R	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	290	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TTGCAAAGCGGATAACAGGCT	0.458													12	48					0	0	0.00136819	0	0
RORB	6096	broad.mit.edu	37	9	77300489	77300489	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:77300489A>C	uc004aji.2	+	10	1417	c.1368A>C	c.(1366-1368)TTA>TTC	p.L456F	RORB_uc004ajh.2_Missense_Mutation_p.L445F	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	456	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						TTCCTCCGTTATACAAGGAGC	0.453													6	84					0	0	0.00116845	0	0
GCNT1	2650	broad.mit.edu	37	9	79118080	79118080	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:79118080C>T	uc010mpf.2	+	3	1124	c.783C>T	c.(781-783)GTC>GTT	p.V261V	GCNT1_uc010mpg.2_Silent_p.V261V|GCNT1_uc010mph.2_Silent_p.V261V|GCNT1_uc004akf.3_Silent_p.V261V|GCNT1_uc010mpi.2_Silent_p.V261V|GCNT1_uc004akh.3_Silent_p.V261V	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	261	Lumenal (Potential).|Catalytic (By similarity).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						GGTATGAGGTCGTTAATGGAA	0.463													7	75					0	0	0.00198382	0	0
VPS13A	23230	broad.mit.edu	37	9	79985331	79985331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:79985331G>A	uc004akr.2	+	65	9004	c.8744G>A	c.(8743-8745)GGT>GAT	p.G2915D	VPS13A_uc004akp.3_Missense_Mutation_p.G2915D|VPS13A_uc004akq.3_Missense_Mutation_p.G2915D|VPS13A_uc004aks.2_Missense_Mutation_p.G2876D	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	2915					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TTTCTGTCAGGTGGATTGGCT	0.428													10	41					0	0	0.000673444	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608067	84608067	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:84608067C>T	uc004amn.2	+	4	2729	c.2682C>T	c.(2680-2682)TTC>TTT	p.F894F		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	894						integral to membrane					0						AAATTTCCTTCCTTAGTTCCA	0.433													4	31					0	0	0.00024832	0	0
KIF27	55582	broad.mit.edu	37	9	86518863	86518863	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:86518863A>G	uc004ana.2	-	4	714	c.570T>C	c.(568-570)AAT>AAC	p.N190N	KIF27_uc010mpw.2_Silent_p.N190N|KIF27_uc010mpx.2_Silent_p.N190N	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	190	Kinesin-motor.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						GTCTGGCTGCATTCCCCATCT	0.408													24	117					0	0	0.000720815	0	0
KIF27	55582	broad.mit.edu	37	9	86530216	86530216	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:86530216G>A	uc004ana.2	-	2	435	c.291C>T	c.(289-291)GGC>GGT	p.G97G	KIF27_uc010mpw.2_Silent_p.G97G|KIF27_uc010mpx.2_Silent_p.G97G	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	97	Kinesin-motor.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						TACCAATATGGCCCCCTCCAA	0.323													10	51					0	0	0.000978159	0	0
NAA35	60560	broad.mit.edu	37	9	88593212	88593212	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:88593212A>T	uc004aoi.3	+	11	930	c.793A>T	c.(793-795)ATG>TTG	p.M265L	NAA35_uc004aoj.3_Missense_Mutation_p.M265L|NAA35_uc004aok.1_Missense_Mutation_p.M265L	NM_024635	NP_078911	Q5VZE5	NAA35_HUMAN	corneal wound healing-related protein	265					smooth muscle cell proliferation	cytoplasm|nucleus|plasma membrane				skin(2)|central_nervous_system(1)	3						TCAAAAATTGATGGTTCAAGC	0.348													12	78					0	0	0.00244969	0	0
CTSL3	392360	broad.mit.edu	37	9	90396141	90396141	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:90396141C>A	uc004apm.1	+	4	517	c.511C>A	c.(511-513)CAG>AAG	p.Q171K		NR_027917				RecName: Full=Putative cathepsin L-like protein 3;          Short=Cathepsin L-like protein; AltName: Full=HCTSL-s;											ovary(1)	1						tgaggtggcacaggtcatcac	0													4	31					0.000602214	0.00240203	0.000602214	1	0
Unknown	0	broad.mit.edu	37	9	90746226	90746226	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:90746226G>A	uc011lti.1	-	4	1755	c.1726C>T	c.(1726-1728)CTG>TTG	p.L576L						SubName: Full=cDNA FLJ59639;																		TGGGCTTTCAGGATGTTTTCT	0.517													6	74					0	0	0.00198382	0	0
SHC3	53358	broad.mit.edu	37	9	91686138	91686138	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:91686138G>A	uc004aqg.2	-	5	1066	c.759C>T	c.(757-759)ATC>ATT	p.I253I		NM_016848	NP_058544	Q92529	SHC3_HUMAN	src homology 2 domain-containing transforming	253	PID.				central nervous system development|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	protein binding|signal transducer activity			lung(3)|skin(1)	4						AGGCGAAGGAGATGGACCGCA	0.498													6	34					0	0	0.000274275	0	0
ROR2	4920	broad.mit.edu	37	9	94486555	94486555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:94486555C>T	uc004arj.1	-	9	2420	c.2221G>A	c.(2221-2223)GAC>AAC	p.D741N	ROR2_uc004ari.1_Missense_Mutation_p.D601N	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	741	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CTGTGGATGTCCTTGAAGCGG	0.662													11	47					0	0	0.000978159	0	0
ROR2	4920	broad.mit.edu	37	9	94499761	94499761	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:94499761C>T	uc004arj.1	-	5	733	c.534G>A	c.(532-534)CGG>CGA	p.R178R	ROR2_uc004ari.1_Silent_p.R38R|ROR2_uc004ark.2_Silent_p.R178R	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	178	FZ.|Extracellular (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						AGGCAATTCCCCGGTAAGGCT	0.532													9	36					0	0	0.000673444	0	0
PHF2	5253	broad.mit.edu	37	9	96428031	96428031	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:96428031G>A	uc004aub.2	+	15	2148	c.2001G>A	c.(1999-2001)GAG>GAA	p.E667E	PHF2_uc011lug.1_Silent_p.E550E|PHF2_uc004auc.2_Silent_p.E86E	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	667					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		ACTTCAAGGAGGACAAGCCCA	0.587													17	52					0	0	0.000566183	0	0
FAM22F	54754	broad.mit.edu	37	9	97082597	97082597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:97082597C>T	uc004aup.1	-	5	1282	c.1261G>A	c.(1261-1263)GAA>AAA	p.E421K		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	421											0		Acute lymphoblastic leukemia(62;0.136)				TTGCCCTTTTCCCGTTGTCCC	0.587													10	43					0	0	0.000978159	0	0
KIAA1529	57653	broad.mit.edu	37	9	100119947	100119947	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:100119947C>T	uc011lut.1	+	37	4625	c.3852C>T	c.(3850-3852)TTC>TTT	p.F1284F	KIAA1529_uc004axe.1_Silent_p.F1116F|KIAA1529_uc004axg.1_Silent_p.F1145F|KIAA1529_uc004axh.1_RNA|KIAA1529_uc011luw.1_Silent_p.F301F	NM_020893	NP_065944			hypothetical protein LOC57653											ovary(4)|large_intestine(2)|skin(1)	7		Acute lymphoblastic leukemia(62;0.154)				GATTAAATTTCTCTCTGCAAC	0.358													26	206					0	0	0.00283554	0	0
TDRD7	23424	broad.mit.edu	37	9	100193324	100193324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:100193324G>A	uc004axj.2	+	3	542	c.317G>A	c.(316-318)AGA>AAA	p.R106K	TDRD7_uc011lux.1_Missense_Mutation_p.R32K	NM_014290	NP_055105	Q8NHU6	TDRD7_HUMAN	tudor domain containing 7	106					lens fiber cell differentiation|lens morphogenesis in camera-type eye|posttranscriptional regulation of gene expression|spermatogenesis	chromatoid body	mRNA binding			ovary(2)|pancreas(1)	3		Acute lymphoblastic leukemia(62;0.158)				TGTCAGATGAGAGTGAAGAAA	0.403													6	66					0	0	0.000157383	0	0
HEMGN	55363	broad.mit.edu	37	9	100692587	100692587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:100692587C>T	uc004axy.2	-	3	1198	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K	HEMGN_uc004axz.2_Missense_Mutation_p.E364K	NM_197978	NP_932095	Q9BXL5	HEMGN_HUMAN	hemogen	364					cell differentiation|multicellular organismal development					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0559)				GAATATTTTTCAGACCCAGGA	0.368													19	158					0	0	0.000958276	0	0
CYLC2	1539	broad.mit.edu	37	9	105767538	105767538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:105767538G>A	uc004bbs.2	+	5	695	c.625G>A	c.(625-627)GAA>AAA	p.E209K		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	209	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				ATCTGAAGGTGAAAAAGGAGG	0.264													7	37					0	0	0.000157383	0	0
OR13C4	138804	broad.mit.edu	37	9	107289287	107289287	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:107289287G>A	uc011lvn.1	-	1	204	c.204C>T	c.(202-204)TTC>TTT	p.F68F		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGATATCCAGGAAAGAGAGGT	0.438													8	39					0	0	0.000157383	0	0
OR13D1	286365	broad.mit.edu	37	9	107457149	107457149	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:107457149G>A	uc011lvs.1	+	1	447	c.447G>A	c.(445-447)GTG>GTA	p.V149V		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	149	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCCTGGCTGTGATGGCCTATG	0.507													9	63					0	0	0.000274275	0	0
ACTL7B	10880	broad.mit.edu	37	9	111617786	111617786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:111617786G>A	uc004bdi.2	-	1	490	c.425C>T	c.(424-426)CCC>CTC	p.P142L		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	142						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						GTGCTCCTCGGGGAGGATCTT	0.627													6	27					0	0	0.00198382	0	0
SVEP1	79987	broad.mit.edu	37	9	113198674	113198674	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:113198674G>A	uc010mtz.2	-	28	5087	c.4750C>T	c.(4750-4752)CTG>TTG	p.L1584L		NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1584	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGTGGAGACAGGACATAGTCC	0.448													14	95					0	0	0.00244969	0	0
MUSK	4593	broad.mit.edu	37	9	113530113	113530113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:113530113G>A	uc004bey.2	+	8	1032	c.934G>A	c.(934-936)GAT>AAT	p.D312N		NM_005592	NP_005583	O15146	MUSK_HUMAN	skeletal muscle receptor tyrosine kinase	312	FZ.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|ovary(2)|central_nervous_system(1)	6						ACCACAGAAAGATAACAAAGG	0.403													17	56					0	0	0.00188189	0	0
SUSD1	64420	broad.mit.edu	37	9	114840972	114840972	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:114840972C>T	uc004bfu.2	-	12	1640	c.1599G>A	c.(1597-1599)AAG>AAA	p.K533K	SUSD1_uc010mui.2_Silent_p.K533K|SUSD1_uc010muj.2_Silent_p.K533K	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	533	Extracellular (Potential).					integral to membrane	calcium ion binding				0						GGGCAAATTCCTTCTGATACC	0.483													13	63					0	0	0.00244969	0	0
COL27A1	85301	broad.mit.edu	37	9	116931580	116931580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:116931580C>T	uc011lxl.1	+	3	1745	c.1745C>T	c.(1744-1746)CCC>CTC	p.P582L	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.P432L	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	582	Pro-rich.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CAGCCCCAGCCCAGTCAGCAG	0.667													10	46					0	0	0.000978159	0	0
TNFSF15	9966	broad.mit.edu	37	9	117554724	117554724	+	Silent	SNP	A	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:117554724A>C	uc004bjh.2	-	3	380	c.264T>G	c.(262-264)CTT>CTG	p.L88L	TNFSF15_uc004bjg.2_Silent_p.L29L	NM_005118	NP_005109	O95150	TNF15_HUMAN	tumor necrosis factor (ligand) superfamily,	88	Extracellular (Potential).				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|cytokine metabolic process|immune response	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding				0						CGTCTGCTCTAAGAGGTGCAT	0.488													3	51					0	0	6.4e-05	0	0
PAPPA	5069	broad.mit.edu	37	9	118950271	118950271	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:118950271G>A	uc004bjn.2	+	2	1635	c.1254G>A	c.(1252-1254)AAG>AAA	p.K418K	PAPPA_uc011lxp.1_Silent_p.K211K|PAPPA_uc011lxq.1_Silent_p.K211K	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	418	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ACATCAGCAAGATTGGGGATG	0.617													6	39					0	0	0.00116845	0	0
ASTN2	23245	broad.mit.edu	37	9	119380722	119380722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:119380722G>A	uc004bjs.1	-	19	3337	c.3236C>T	c.(3235-3237)TCC>TTC	p.S1079F	ASTN2_uc004bjr.1_Missense_Mutation_p.S1075F|ASTN2_uc004bjt.1_Missense_Mutation_p.S1028F|ASTN2_uc004bjp.1_Missense_Mutation_p.S172F|ASTN2_uc004bjq.1_Missense_Mutation_p.S131F|ASTN2_uc011lxr.1_Missense_Mutation_p.S131F|ASTN2_uc011lxs.1_Missense_Mutation_p.S131F|ASTN2_uc011lxt.1_Missense_Mutation_p.S131F|ASTN2_uc004bjv.1_Missense_Mutation_p.S131F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	1079	Extracellular (Potential).|Fibronectin type-III.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						CACAGTACTGGAGGGCTCCAC	0.522													7	28					0	0	0.000274275	0	0
PTGS1	5742	broad.mit.edu	37	9	125154644	125154644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:125154644C>T	uc004bmg.1	+	11	1756	c.1621C>T	c.(1621-1623)CCG>TCG	p.P541S	PTGS1_uc011lys.1_Missense_Mutation_p.P479S|PTGS1_uc010mwb.1_Missense_Mutation_p.P395S|PTGS1_uc004bmf.1_Missense_Mutation_p.P504S|PTGS1_uc004bmh.1_Missense_Mutation_p.P432S|PTGS1_uc011lyt.1_Missense_Mutation_p.P432S	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	541					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CATCTGTTCTCCGGAGTACTG	0.517													6	77					0	0	0.00116845	0	0
OR1J4	26219	broad.mit.edu	37	9	125281534	125281534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:125281534G>A	uc011lyw.1	+	1	115	c.115G>A	c.(115-117)GTG>ATG	p.V39M		NM_001004452	NP_001004452	Q8NGS1	OR1J4_HUMAN	olfactory receptor, family 1, subfamily J,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGATCACGGTGCTGGGGAA	0.567													7	74					0	0	0.00198382	0	0
OR5C1	392391	broad.mit.edu	37	9	125551214	125551214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:125551214G>A	uc011lzd.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001001923	NP_001001923	Q8NGR4	OR5C1_HUMAN	olfactory receptor, family 5, subfamily C,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						CCAGTAGGATGAACTCAGAGA	0.443													18	45					0	0	0.00278032	0	0
STRBP	55342	broad.mit.edu	37	9	125909134	125909134	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:125909134C>T	uc004bns.2	-	13	1768	c.1338G>A	c.(1336-1338)AAG>AAA	p.K446K	STRBP_uc004bnt.2_Silent_p.K264K|STRBP_uc004bnu.2_Silent_p.K432K|STRBP_uc004bnv.2_Silent_p.K446K|STRBP_uc004bnr.2_Silent_p.K58K	NM_018387	NP_060857	Q96SI9	STRBP_HUMAN	spermatid perinuclear RNA binding protein	446	DRBM 1.				multicellular organismal development	cytoplasm|nucleus	DNA binding			breast(1)|skin(1)	2						AATACTGTACCTTCACCGCTA	0.318													10	29					0	0	0.000978159	0	0
NR5A1	2516	broad.mit.edu	37	9	127253497	127253497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:127253497G>A	uc004boo.1	-	6	1188	c.1001C>T	c.(1000-1002)ACC>ATC	p.T334I		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	334	Important for dimerization.|Ligand-binding.				cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						GGCCACTGTGGTCAGCTCCAC	0.706													4	23					0	0	0.000602214	0	0
PBX3	5090	broad.mit.edu	37	9	128722988	128722988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:128722988G>A	uc004bqb.2	+	6	985	c.869G>A	c.(868-870)CGA>CAA	p.R290Q	PBX3_uc004bqc.2_Missense_Mutation_p.R109Q|PBX3_uc004bqd.2_Missense_Mutation_p.R109Q|PBX3_uc011lzw.1_Missense_Mutation_p.R215Q|PBX3_uc011lzx.1_Missense_Mutation_p.R201Q|PBX3_uc004bqe.2_Missense_Mutation_p.R198Q	NM_006195	NP_006186	P40426	PBX3_HUMAN	pre-B-cell leukemia homeobox 3 isoform 1	290	Homeobox; TALE-type.				anterior compartment pattern formation|posterior compartment specification		sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						GGCAACAAACGAATCAGGTAC	0.473													8	33					0	0	0.000274275	0	0
SH2D3C	10044	broad.mit.edu	37	9	130536637	130536638	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:130536637_130536638GG>AA	uc004bsc.2	-	2	288_289	c.146_147CC>TT	c.(145-147)ACC>ATT	p.T49I	SH2D3C_uc004bsd.1_5'UTR	NM_170600	NP_733745	Q8N5H7	SH2D3_HUMAN	SH2 domain containing 3C isoform a	49					JNK cascade|small GTPase mediated signal transduction	cytoplasm|membrane	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			ovary(1)	1						TGGCTTCAAAGGTGTCAGGCTC	0.579													9	32					0	0	6.4e-05	0	0
SETX	23064	broad.mit.edu	37	9	135201882	135201882	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:135201882G>A	uc004cbk.2	-	10	5286	c.5103C>T	c.(5101-5103)TTC>TTT	p.F1701F	SETX_uc004cbj.2_Silent_p.F1320F|SETX_uc010mzt.2_Silent_p.F1320F	NM_015046	NP_055861	Q7Z333	SETX_HUMAN	senataxin	1701					cell death|double-strand break repair|RNA processing	cytoplasm|nucleolus|nucleoplasm	ATP binding|DNA helicase activity			ovary(2)|skin(1)	3		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000171)		CCTCTTTAACGAAGGTGTCAG	0.418													10	43					0	0	0.000978159	0	0
RPL7A	6130	broad.mit.edu	37	9	136216438	136216438	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:136216438C>A	uc004cde.1	+	3	187	c.157C>A	c.(157-159)CGC>AGC	p.R53S	MED22_uc004cdc.2_5'Flank|MED22_uc004cdd.2_5'Flank|RPL7A_uc004cdf.1_5'UTR|SNORD36B_uc010nai.1_5'Flank|SNORD36A_uc010naj.2_5'Flank|SNORD36C_uc010nak.2_5'Flank	NM_000972	NP_000963	P62424	RL7A_HUMAN	ribosomal protein L7a	53					endocrine pancreas development|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit|membrane fraction|polysomal ribosome	RNA binding|structural constituent of ribosome				0				OV - Ovarian serous cystadenocarcinoma(145;4.93e-07)|Epithelial(140;4.09e-06)|all cancers(34;3.78e-05)		AGACCTCACCCGCTTTGTGAA	0.537													6	43					0.00198382	0.00786986	0.00198382	1	0
SLC2A6	11182	broad.mit.edu	37	9	136337165	136337165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:136337165C>T	uc004cee.2	-	10	1597	c.1502G>A	c.(1501-1503)GGG>GAG	p.G501E	SLC2A6_uc004cef.2_Missense_Mutation_p.G439E|SLC2A6_uc004ceg.2_Missense_Mutation_p.G478E	NM_017585	NP_060055	Q9UGQ3	GTR6_HUMAN	solute carrier family 2 (facilitated glucose	501	Cytoplasmic (Potential).					integral to membrane|plasma membrane	D-glucose transmembrane transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;8.47e-08)|Epithelial(140;9.37e-07)|all cancers(34;1.03e-05)		GGACCTTCTCCCCGTGCGGAA	0.637													7	32					0	0	0.000274275	0	0
COL5A1	1289	broad.mit.edu	37	9	137674560	137674560	+	Silent	SNP	T	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:137674560T>G	uc004cfe.2	+	29	2860	c.2478T>G	c.(2476-2478)GGT>GGG	p.G826G		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	826	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GCATCAAGGGTGATCGGGTGA	0.592													8	104					0	0	0.000442599	0	0
KIAA0649	9858	broad.mit.edu	37	9	138378936	138378936	+	Silent	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:138378936A>G	uc004cfr.1	+	4	3129	c.2580A>G	c.(2578-2580)GCA>GCG	p.A860A		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	860						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		AAGTTCAGGCAGAGGGCCCCA	0.607													3	72					0	0	0.00024832	0	0
ABCA2	20	broad.mit.edu	37	9	139905119	139905120	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:139905119_139905120GG>AA	uc011mem.1	-	39	6271_6272	c.6123_6124CC>TT	c.(6121-6126)CTCCGG>CTTTGG	p.R2042W	ABCA2_uc011mel.1_Missense_Mutation_p.R2043W|ABCA2_uc004ckl.1_Missense_Mutation_p.R1973W|ABCA2_uc004ckm.1_Missense_Mutation_p.R2073W	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	2042					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GCGTCTCCCCGGAGCACTCGCT	0.639													16	72					0	0	6.4e-05	0	0
TPRN	286262	broad.mit.edu	37	9	140086682	140086682	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:140086682C>G	uc004clt.2	-	3	1919	c.1919G>C	c.(1918-1920)GGG>GCG	p.G640A	TPRN_uc004clu.2_Intron	NM_173691	NP_775962	Q4KMQ1	TPRN_HUMAN	hypothetical protein LOC286262 isoform 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					sensory perception of sound	stereocilium					0						GTCAGACTCCCCCCAGCGCTC	0.662													3	37					0	0	0.00024832	0	0
CACNA1B	774	broad.mit.edu	37	9	140948323	140948324	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr9:140948323_140948324CC>TT	uc004cog.2	+	26	3978_3979	c.3833_3834CC>TT	c.(3832-3834)TCC>TTT	p.S1278F	CACNA1B_uc011mfd.1_Missense_Mutation_p.S808F|CACNA1B_uc004coi.2_Missense_Mutation_p.S492F	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1278	Cytoplasmic (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GTGGTGAACTCCCTGAAGAATG	0.515													33	164					0	0	6.4e-05	0	0
ASMTL	8623	broad.mit.edu	37	X	1531636	1531636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:1531636C>T	uc004cpx.1	-	12	1745	c.1634G>A	c.(1633-1635)AGC>AAC	p.S545N	NCRNA00105_uc004cpv.2_RNA|NCRNA00105_uc004cpw.2_RNA|ASMTL_uc011mhe.1_Missense_Mutation_p.S469N|ASMTL_uc004cpy.1_Missense_Mutation_p.S529N|ASMTL_uc011mhf.1_Missense_Mutation_p.S487N	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	545	ASMT-like.				melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TGGCTTGCAGCTCTCGGCGAC	0.488													46	194					0	0	0.000781405	0	0
ASMT	438	broad.mit.edu	37	X	1761772	1761772	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:1761772G>A	uc004cqd.2	+	10	1132	c.987G>A	c.(985-987)CTG>CTA	p.L329L	ASMT_uc010ncy.2_Silent_p.L329L|ASMT_uc004cqe.2_Silent_p.L254L	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	301					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TCTACTCTCTGAACATGCTTG	0.542													8	103					0	0	0.000157383	0	0
ARSF	416	broad.mit.edu	37	X	3028290	3028290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:3028290G>A	uc004cre.1	+	10	1608	c.1387G>A	c.(1387-1389)GAC>AAC	p.D463N	ARSF_uc004crf.1_Missense_Mutation_p.D463N	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	463						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCCCAAGGACGACAGTGAGTG	0.572													10	25					0	0	0.00185496	0	0
MXRA5	25878	broad.mit.edu	37	X	3228260	3228260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:3228260G>A	uc004crg.3	-	7	8141	c.7984C>T	c.(7984-7986)CCC>TCC	p.P2662S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2662	Ig-like C2-type 11.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CCAGCCCCGGGAGGGGTGCAG	0.592													12	19					0	0	0.00185496	0	0
MXRA5	25878	broad.mit.edu	37	X	3242419	3242419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:3242419G>A	uc004crg.3	-	5	1464	c.1307C>T	c.(1306-1308)TCC>TTC	p.S436F		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	436						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GATATCTATGGATGGCTGCAT	0.483													16	40					0	0	0.00121646	0	0
MXRA5	25878	broad.mit.edu	37	X	3248173	3248173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:3248173G>A	uc004crg.3	-	4	752	c.595C>T	c.(595-597)CCT>TCT	p.P199S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	199	LRR 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ATGCTGGCAGGAAGAGTTCTA	0.483													4	14					0	0	0.000602214	0	0
MXRA5	25878	broad.mit.edu	37	X	3248289	3248289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:3248289C>T	uc004crg.3	-	4	636	c.479G>A	c.(478-480)GGA>GAA	p.G160E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	160	LRR 5.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAGGAGATTTCCTTCCAAATG	0.468													8	14					0	0	0.000442599	0	0
ATXN3L	92552	broad.mit.edu	37	X	13337902	13337902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:13337902C>T	uc010ned.2	-	1	617	c.152G>A	c.(151-153)GGA>GAA	p.G51E		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	51	Josephin.				protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						GGTGACTCCTCCTTCTGCCAT	0.418													28	65					0	0	0.00283554	0	0
RAI2	10742	broad.mit.edu	37	X	17819704	17819704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:17819704C>T	uc004cyf.2	-	3	997	c.427G>A	c.(427-429)GAG>AAG	p.E143K	RAI2_uc004cyg.2_Missense_Mutation_p.E143K|RAI2_uc010nfa.2_Missense_Mutation_p.E143K|RAI2_uc004cyh.3_Missense_Mutation_p.E143K|RAI2_uc011miy.1_Missense_Mutation_p.E93K	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	143					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					CATGGGGCCTCCTGCGGCAGG	0.657													17	27					0	0	0.00121646	0	0
BEND2	139105	broad.mit.edu	37	X	18221836	18221836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:18221836C>T	uc004cyj.3	-	5	846	c.692G>A	c.(691-693)GGT>GAT	p.G231D	BEND2_uc010nfb.2_Missense_Mutation_p.G231D	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	231										ovary(3)|kidney(1)|central_nervous_system(1)	5						CCATGGCATACCGAAACAAGG	0.453													6	55					0	0	0.00116845	0	0
CDKL5	6792	broad.mit.edu	37	X	18627627	18627627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:18627627C>T	uc004cym.2	+	14	2342	c.2089C>T	c.(2089-2091)CCC>TCC	p.P697S	CDKL5_uc004cyn.2_Missense_Mutation_p.P697S	NM_003159	NP_003150	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	697					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			ovary(2)|large_intestine(1)|stomach(1)|central_nervous_system(1)|skin(1)	6	Hepatocellular(33;0.183)					TGGCACAGCCCCCAAAGAAAA	0.463													9	38					0	0	0.000978159	0	0
CXorf23	256643	broad.mit.edu	37	X	19984628	19984628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:19984628G>A	uc004czp.2	-	2	181	c.181C>T	c.(181-183)CCA>TCA	p.P61S	CXorf23_uc010nfn.2_5'Flank|CXorf23_uc011mjg.1_5'Flank|CXorf23_uc004czo.2_Missense_Mutation_p.P11S	NM_198279	NP_938020	A2AJT9	CX023_HUMAN	hypothetical protein LOC256643	61						mitochondrion				lung(1)|skin(1)	2						GGAATCCTTGGTTTACTCTGT	0.393													30	65					0	0	0.00111076	0	0
FAM47A	158724	broad.mit.edu	37	X	34148155	34148155	+	Silent	SNP	G	C	C			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:34148155G>C	uc004ddg.2	-	1	2274	c.2241C>G	c.(2239-2241)GGC>GGG	p.G747G		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	747										ovary(4)|central_nervous_system(1)	5						GCATTTCATAGCCCTTGCTTA	0.413													17	67					0	0	0.00121646	0	0
DDX3X	1654	broad.mit.edu	37	X	41196686	41196686	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:41196686C>A	uc004dfe.2	+	2	926	c.71C>A	c.(70-72)TCA>TAA	p.S24*	DDX3X_uc004dfd.1_RNA|DDX3X_uc010nhf.1_Nonsense_Mutation_p.S24*|DDX3X_uc004dff.2_Nonsense_Mutation_p.S24*|DDX3X_uc011mkq.1_Nonsense_Mutation_p.S24*|DDX3X_uc011mkr.1_Nonsense_Mutation_p.S24*|DDX3X_uc011mks.1_Nonsense_Mutation_p.S24*|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	24					interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						CTGAACTCTTCAGATAATCAG	0.408										HNSCC(61;0.18)			30	61					2.04263e-09	8.21287e-09	0.000814825	1	0
AKAP4	8852	broad.mit.edu	37	X	49958065	49958065	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:49958065G>A	uc004dow.1	-	5	1423	c.1299C>T	c.(1297-1299)GCC>GCT	p.A433A	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Silent_p.A255A|AKAP4_uc004dou.1_Silent_p.A424A	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	433					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					CACCTATAAGGGCACTGACCA	0.453													13	80					0	0	0.00074312	0	0
FGD1	2245	broad.mit.edu	37	X	54497077	54497077	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:54497077G>A	uc004dtg.2	-	3	1332	c.598C>T	c.(598-600)CCC>TCC	p.P200S	FGD1_uc011moi.1_5'Flank	NM_004463	NP_004454	P98174	FGD1_HUMAN	faciogenital dysplasia protein	200	Pro-rich.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|organ morphogenesis|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|nucleus|plasma membrane|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCTGCCCTGGGAGCCAGGCCC	0.652													4	10					0	0	0.000602214	0	0
EDA	1896	broad.mit.edu	37	X	69255459	69255459	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:69255459G>A	uc004dxs.2	+	8	1418	c.1176G>A	c.(1174-1176)TAG>TAA	p.*392*	EDA_uc004dxr.2_Silent_p.*390*|EDA_uc011mpj.1_Silent_p.*387*	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	392					cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding			ovary(2)|large_intestine(1)	3						CTGCATCCTAGATTCCCCCCA	0.567													10	28					0	0	0.00136819	0	0
XIST	7503	broad.mit.edu	37	X	73064279	73064279	+	RNA	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:73064279G>A	uc004ebm.1	-	1		c.8310C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGGCCTCAGTGATCAGCACCC	0.438													8	12					0	0	0.000274275	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960241	73960241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:73960241C>T	uc004eby.2	-	3	4768	c.4151G>A	c.(4150-4152)GGG>GAG	p.G1384E		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1384					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCCTTGGGACCCACTGTTGAT	0.448													16	40					0	0	0.00074312	0	0
ABCB7	22	broad.mit.edu	37	X	74318808	74318808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:74318808G>A	uc004eca.2	-	4	447	c.422C>T	c.(421-423)GCC>GTC	p.A141V	ABCB7_uc004ebz.2_Missense_Mutation_p.A142V|ABCB7_uc011mqn.1_Missense_Mutation_p.A115V|ABCB7_uc010nls.2_Intron|ABCB7_uc010nlt.2_Intron	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	141	ABC transmembrane type-1.|Helical; (Potential).			A -> P (in Ref. 4; AAC39865).	cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						CAGCGAAATGGCAACTCTAGC	0.383													8	29					0	0	0.000442599	0	0
MAGEE1	57692	broad.mit.edu	37	X	75650874	75650874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:75650874C>T	uc004ecm.1	+	1	2758	c.2551C>T	c.(2551-2553)CAT>TAT	p.H851Y		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	851	Interaction with DTNA (By similarity).|MAGE 2.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						TATGGGCAACCATGCCAGGGA	0.493													4	11					0	0	0.00024832	0	0
PCDH11X	27328	broad.mit.edu	37	X	91132487	91132487	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:91132487C>T	uc004efk.1	+	2	2093	c.1248C>T	c.(1246-1248)TTC>TTT	p.F416F	PCDH11X_uc004efl.1_Silent_p.F416F|PCDH11X_uc004efo.1_Silent_p.F416F|PCDH11X_uc010nmv.1_Silent_p.F416F|PCDH11X_uc004efm.1_Silent_p.F416F|PCDH11X_uc004efn.1_Silent_p.F416F|PCDH11X_uc004efh.1_Silent_p.F416F|PCDH11X_uc004efj.1_Silent_p.F416F	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	416	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GTAATCAGTTCCTCCTGGAGA	0.438													5	36					0	0	0.00116845	0	0
DIAPH2	1730	broad.mit.edu	37	X	96213036	96213036	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:96213036C>T	uc004efu.3	+	16	2220	c.1824C>T	c.(1822-1824)CCC>CCT	p.P608P	DIAPH2_uc004eft.3_Silent_p.P608P	NM_006729	NP_006720	O60879	DIAP2_HUMAN	diaphanous 2 isoform 156	608	FH1.|Poly-Pro.				cell differentiation|cytokinesis|multicellular organismal development|oogenesis	cytosol|early endosome|Golgi apparatus|mitochondrion|nucleolus	receptor binding|Rho GTPase binding			ovary(3)|lung(1)	4						CACCACCACCCCTTGGAGGAG	0.493													6	25					0	0	0.00116845	0	0
NXF3	56000	broad.mit.edu	37	X	102332623	102332623	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:102332623C>T	uc004eju.2	-	18	1574	c.1503G>A	c.(1501-1503)GGG>GGA	p.G501G	NXF3_uc010noi.1_3'UTR	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	501						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CACTCTGGGTCCCTTGGTGGC	0.572													6	40					0	0	0.000157383	0	0
TEX13A	56157	broad.mit.edu	37	X	104464406	104464406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:104464406C>T	uc004ema.2	-	3	584	c.472G>A	c.(472-474)GGG>AGG	p.G158R	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.G158R	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	158						intracellular	zinc ion binding			ovary(2)	2						CCTGGCCACCCTGCCCCCTGC	0.557													4	20					0	0	0.00024832	0	0
SERPINA7	6906	broad.mit.edu	37	X	105277506	105277506	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:105277506G>A	uc004eme.1	-	4	1249	c.1233C>T	c.(1231-1233)AAC>AAT	p.N411N	SERPINA7_uc010npd.2_Silent_p.N411N	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	411					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	CTTCCGTTGGGTTCACAACTT	0.388													11	60					0	0	0.00244969	0	0
MID2	11043	broad.mit.edu	37	X	107084244	107084245	+	Missense_Mutation	DNP	CC	TT	TT	rs35716955		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:107084244_107084245CC>TT	uc004enl.2	+	2	922_923	c.349_350CC>TT	c.(349-351)CCT>TTT	p.P117F	MID2_uc004enk.2_Missense_Mutation_p.P117F	NM_012216	NP_036348	Q9UJV3	TRIM1_HUMAN	midline 2 isoform 1	117						centrosome|microtubule	ligase activity|zinc ion binding			ovary(1)	1						GCCCAATTCCCCTAGTGAGAGC	0.569													9	16					0	0	6.4e-05	0	0
COL4A6	1288	broad.mit.edu	37	X	107413904	107413904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:107413904G>A	uc004enw.3	-	35	3534	c.3431C>T	c.(3430-3432)CCA>CTA	p.P1144L	COL4A6_uc004env.3_Missense_Mutation_p.P1143L|COL4A6_uc011msn.1_Missense_Mutation_p.P1143L|COL4A6_uc010npk.2_Missense_Mutation_p.P1143L	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1144	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						AGAAGAACCTGGAAGTCCTGG	0.507									Alport_syndrome_with_Diffuse_Leiomyomatosis				31	57					0	0	0.000814825	0	0
COL4A6	1288	broad.mit.edu	37	X	107436889	107436889	+	Silent	SNP	A	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:107436889A>T	uc004enw.3	-	17	1147	c.1044T>A	c.(1042-1044)GTT>GTA	p.V348V	COL4A6_uc004env.3_Silent_p.V347V|COL4A6_uc011msn.1_Silent_p.V347V|COL4A6_uc010npk.2_Silent_p.V347V	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	348	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						TATCGATGAAAACATCTGGGC	0.373									Alport_syndrome_with_Diffuse_Leiomyomatosis				16	97					0	0	0.00152264	0	0
COL4A5	1287	broad.mit.edu	37	X	107865032	107865032	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:107865032G>A	uc004enz.1	+	32	2880	c.2678_splice	c.e32-1	p.G893_splice	COL4A5_uc011mso.1_Splice_Site_p.G893_splice|COL4A5_uc004eob.1_Splice_Site_p.G501_splice	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor						axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						ATTCTTCAAAGGTACCAAAGG	0.413									Alport_syndrome_with_Diffuse_Leiomyomatosis				8	21					0	0	0.000274275	0	0
COL4A5	1287	broad.mit.edu	37	X	107865993	107865993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:107865993C>T	uc004enz.1	+	33	3057	c.2855C>T	c.(2854-2856)CCT>CTT	p.P952L	COL4A5_uc011mso.1_Missense_Mutation_p.P952L|COL4A5_uc004eob.1_Missense_Mutation_p.P560L	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	952	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCAGGCCCTCCTGGACCAATG	0.473									Alport_syndrome_with_Diffuse_Leiomyomatosis				13	29					0	0	0.00185496	0	0
GUCY2F	2986	broad.mit.edu	37	X	108652302	108652302	+	Silent	SNP	C	T	T	rs148430164		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:108652302C>T	uc004eod.3	-	9	2163	c.1887G>A	c.(1885-1887)GGG>GGA	p.G629G	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	629	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CTTCTAGGCTCCCTCGGGAAC	0.413													16	77					0	0	0.00121646	0	0
GUCY2F	2986	broad.mit.edu	37	X	108696822	108696822	+	Silent	SNP	G	A	A	rs55975687	byFrequency	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:108696822G>A	uc004eod.3	-	4	1575	c.1299C>T	c.(1297-1299)TTC>TTT	p.F433F	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	433	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						GGGTCCCTCCGAAACGTAGCA	0.488													8	13					0	0	0.000442599	0	0
CAPN6	827	broad.mit.edu	37	X	110494480	110494480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:110494480G>A	uc004epc.1	-	7	1096	c.928C>T	c.(928-930)CGC>TGC	p.R310C	CAPN6_uc011msu.1_Missense_Mutation_p.R55C	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	310	Calpain catalytic.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						AGGTTCTTGCGATCTGATGCA	0.398													7	14					0	0	0.000157383	0	0
DCX	1641	broad.mit.edu	37	X	110574161	110574161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:110574161G>A	uc004epd.2	-	5	1332	c.1160C>T	c.(1159-1161)TCT>TTT	p.S387F	DCX_uc011msv.1_Missense_Mutation_p.S387F|DCX_uc004epe.2_Missense_Mutation_p.S306F|DCX_uc004epf.2_Missense_Mutation_p.S306F|DCX_uc004epg.2_Missense_Mutation_p.S306F	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	387	Pro/Ser-rich.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GTCAGCTGGAGACTTGCTTCG	0.527													10	77					0	0	0.000978159	0	0
TRPC5	7224	broad.mit.edu	37	X	111097061	111097061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:111097061C>T	uc004epl.1	-	4	2093	c.1174G>A	c.(1174-1176)GAC>AAC	p.D392N	TRPC5_uc004epm.1_Missense_Mutation_p.D392N	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	392	Extracellular (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						ACATGAAGGTCTGTCCTGACA	0.488													14	32					0	0	0.000566183	0	0
SLC6A14	11254	broad.mit.edu	37	X	115590108	115590108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:115590108G>A	uc004eqi.2	+	14	2020	c.1916G>A	c.(1915-1917)AGA>AAA	p.R639K		NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	639	Cytoplasmic (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	AGTGGCAGCAGAAAACCGGAA	0.358													14	46					0	0	0.00244969	0	0
KLHL13	90293	broad.mit.edu	37	X	117106747	117106747	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:117106747G>A	uc004eql.2	-	1	107	c.45C>T	c.(43-45)TTC>TTT	p.F15F	KLHL13_uc011mtn.1_5'UTR|KLHL13_uc011mto.1_Intron|KLHL13_uc011mtp.1_Intron|KLHL13_uc004eqm.2_Intron|KLHL13_uc011mtq.1_Intron	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	15					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CAGGAACTGGGAATTTCCAGA	0.398													12	30					0	0	0.00244969	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221191	118221192	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:118221191_118221192GG>AA	uc004era.3	-	11	4001_4002	c.4001_4002CC>TT	c.(4000-4002)TCC>TTT	p.S1334F		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1334										ovary(4)|skin(1)	5						CTGAGGCTTGGGAAGAATGTTT	0.475													49	102					0	0	6.4e-05	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221688	118221688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:118221688C>T	uc004era.3	-	11	3505	c.3505G>A	c.(3505-3507)GAA>AAA	p.E1169K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1169										ovary(4)|skin(1)	5						GAGGTCATTTCCTGAACTTTA	0.473													8	13					0	0	0.000442599	0	0
ODZ1	10178	broad.mit.edu	37	X	123787498	123787498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:123787498G>A	uc004euj.2	-	7	1368	c.1304C>T	c.(1303-1305)TCT>TTT	p.S435F	ODZ1_uc011muj.1_Missense_Mutation_p.S434F|ODZ1_uc010nqy.2_Missense_Mutation_p.S435F	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	435	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTTGGCTAAAGAAATATTGAA	0.388													23	54					0	0	0.000720815	0	0
BCORL1	63035	broad.mit.edu	37	X	129149395	129149396	+	Missense_Mutation	DNP	GG	AA	AA	rs138477961		TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:129149395_129149396GG>AA	uc004evb.1	+	4	2761_2762	c.2647_2648GG>AA	c.(2647-2649)GGA>AAA	p.G883K	BCORL1_uc010nrd.1_Missense_Mutation_p.G785K	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	883					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						AGCCGTGCACGGACTTCCTGAG	0.604													6	12					0	0	6.4e-05	0	0
IGSF1	3547	broad.mit.edu	37	X	130410050	130410050	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:130410050G>A	uc004ewd.2	-	15	3019	c.2781C>T	c.(2779-2781)TTC>TTT	p.F927F	IGSF1_uc004ewe.3_Silent_p.F921F|IGSF1_uc004ewf.2_Silent_p.F907F	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	927	Extracellular (Potential).|Ig-like C2-type 9.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TGTGGAGAAGGAAGTCAGCTG	0.522													11	20					0	0	0.00244969	0	0
FRMD7	90167	broad.mit.edu	37	X	131212601	131212601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:131212601G>A	uc004ewn.2	-	12	1622	c.1444C>T	c.(1444-1446)CCT>TCT	p.P482S	FRMD7_uc011muy.1_Missense_Mutation_p.P467S	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	482					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCTGTACAAGGAATATAGGGC	0.478													16	44					0	0	0.000308642	0	0
USP26	83844	broad.mit.edu	37	X	132159790	132159790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:132159790C>T	uc010nrm.1	-	6	2929	c.2459G>A	c.(2458-2460)GGA>GAA	p.G820E	USP26_uc011mvf.1_Missense_Mutation_p.G820E	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	820					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GGTATGATCTCCCTTATCATC	0.383													5	42					0	0	0.00116845	0	0
GPC4	2239	broad.mit.edu	37	X	132439917	132439917	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:132439917G>A	uc004exc.1	-	6	1250	c.1038C>T	c.(1036-1038)CCC>CCT	p.P346P	GPC4_uc011mvg.1_Silent_p.P276P	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	346					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					CAGCTGGGAGGGGCTTGGGGG	0.592													32	66					0	0	0.00148497	0	0
CT45A5	441521	broad.mit.edu	37	X	134948038	134948038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:134948038C>T	uc004eze.2	-	3	532	c.287G>A	c.(286-288)GGA>GAA	p.G96E	CT45A5_uc011mvu.1_Missense_Mutation_p.G96E	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5	96											0						GGTAACATTTCCTCCCACAGG	0.433													28	123					0	0	0.000814825	0	0
SAGE1	55511	broad.mit.edu	37	X	134994496	134994496	+	Silent	SNP	C	T	T	rs137933327	by1000genomes	TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:134994496C>T	uc004ezh.2	+	19	2705	c.2538C>T	c.(2536-2538)TTC>TTT	p.F846F	SAGE1_uc010nry.1_3'UTR|SAGE1_uc011mvv.1_Silent_p.F470F	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	846										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AAAGAATTTTCATTTTGCTTG	0.318													19	71					0	0	0.00121646	0	0
GPR112	139378	broad.mit.edu	37	X	135469917	135469917	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:135469917C>G	uc004ezu.1	+	16	8086	c.7795C>G	c.(7795-7797)CCT>GCT	p.P2599A	GPR112_uc010nsb.1_Missense_Mutation_p.P2394A	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2599	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AGGCAATGTCCCTGTGGGAGG	0.433													10	37					0	0	0.000673444	0	0
CXorf66	347487	broad.mit.edu	37	X	139038113	139038113	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:139038113A>G	uc004fbb.2	-	3	1050	c.1028T>C	c.(1027-1029)ATC>ACC	p.I343T		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	343	Cytoplasmic (Potential).					integral to membrane					0						ACACGTAATGATTATAACTTT	0.358													8	45					0	0	0.000157383	0	0
SOX3	6658	broad.mit.edu	37	X	139586740	139586740	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:139586740G>A	uc004fbd.1	-	1	486	c.486C>T	c.(484-486)CCC>CCT	p.P162P		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	162	HMG box.				face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					TGTGCATCTTGGGGTTCTCCA	0.612													5	25					0	0	0.00116845	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995238	140995238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:140995238C>T	uc004fbt.2	+	4	2334	c.2048C>T	c.(2047-2049)CCT>CTT	p.P683L	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	683							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGAGTGCTCCTGAGGGGGAG	0.572										HNSCC(15;0.026)			7	20					0	0	0.000157383	0	0
MAGEC2	51438	broad.mit.edu	37	X	141290912	141290912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:141290912C>T	uc004fbu.1	-	3	1210	c.862G>A	c.(862-864)GAG>AAG	p.E288K		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	288	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TGGGGCACCTCCCGATACTCC	0.507										HNSCC(46;0.14)			5	21					0	0	0.00116845	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291491	141291491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:141291491G>A	uc004fbu.1	-	3	631	c.283C>T	c.(283-285)CCT>TCT	p.P95S		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	95	Ser-rich.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ctctgggaaggaccctgtgga	0.423										HNSCC(46;0.14)			9	13					0	0	0.000274275	0	0
SPANXN3	139067	broad.mit.edu	37	X	142605190	142605190	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:142605190C>T	uc004fbw.2	-	1	118	c.30G>A	c.(28-30)GGG>GGA	p.G10G		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	10										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCGTCTTCTCCCCATTGGTGC	0.343													9	67					0	0	0.000442599	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717196	142717196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:142717196C>T	uc004fbx.2	-	2	2105	c.1729G>A	c.(1729-1731)GAA>AAA	p.E577K	SLITRK4_uc004fby.2_Missense_Mutation_p.E577K	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	577	Extracellular (Potential).|LRRCT 2.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CATAAGATTTCATTTTTGAGG	0.463													6	39					0	0	0.00198382	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717706	142717706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:142717706G>A	uc004fbx.2	-	2	1595	c.1219C>T	c.(1219-1221)CAT>TAT	p.H407Y	SLITRK4_uc004fby.2_Missense_Mutation_p.H407Y	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	407	Extracellular (Potential).|LRR 8.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTGCCTAAATGAAGCAAATCC	0.403													7	53					0	0	0.00198382	0	0
FMR1NB	158521	broad.mit.edu	37	X	147106386	147106386	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:147106386G>A	uc004fcm.2	+	5	708	c.634G>A	c.(634-636)GAA>AAA	p.E212K		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	212	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					ATGTTACAGCGAACCGGCCGA	0.368													17	37					0	0	0.00152264	0	0
MAGEA11	4110	broad.mit.edu	37	X	148797799	148797799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:148797799C>T	uc004fdq.2	+	5	755	c.653C>T	c.(652-654)TCC>TTC	p.S218F	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Missense_Mutation_p.S189F	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	218						cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GAGTCCTTTTCCCAAGATATA	0.483													28	36					0	0	0.00178596	0	0
GPR50	9248	broad.mit.edu	37	X	150349595	150349595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:150349595G>A	uc010ntg.1	+	2	1675	c.1540G>A	c.(1540-1542)GAG>AAG	p.E514K		NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	514	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CAGCCATGCTGAGCCCACCAC	0.607													7	19					0	0	0.000157383	0	0
FATE1	89885	broad.mit.edu	37	X	150885784	150885784	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:150885784G>A	uc004fex.2	+	2	231	c.147G>A	c.(145-147)CAG>CAA	p.Q49Q		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	49						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GTGCCTCCCAGAAGAAGCAGA	0.517													24	54					0	0	0.00278032	0	0
GABRQ	55879	broad.mit.edu	37	X	151821657	151821657	+	Silent	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:151821657C>T	uc004ffp.1	+	9	1832	c.1812C>T	c.(1810-1812)GTC>GTT	p.V604V		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	604						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGACTACGTCCCAAAGGTCG	0.512													8	32					0	0	0.000274275	0	0
MAGEA12	4111	broad.mit.edu	37	X	151899988	151899988	+	Silent	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:151899988G>A	uc010ntp.2	-	3	1167	c.813C>T	c.(811-813)TTC>TTT	p.F271F	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.F271F	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	271	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GACCCCACAGGAACTCGTAGC	0.552													15	40					0	0	0.000566183	0	0
L1CAM	3897	broad.mit.edu	37	X	153130813	153130813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:153130813G>A	uc004fjb.2	-	20	2798	c.2690C>T	c.(2689-2691)GCC>GTC	p.A897V	L1CAM_uc004fjc.2_Missense_Mutation_p.A897V|L1CAM_uc010nuo.2_Missense_Mutation_p.A892V	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	897	Extracellular (Potential).|Fibronectin type-III 3.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane		p.A897A(1)		ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCGTTAAAGGCCTGCACCTC	0.632													9	23					0	0	0.000274275	0	0
HCFC1	3054	broad.mit.edu	37	X	153222905	153222905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:153222905G>A	uc004fjp.2	-	13	2741	c.2213C>T	c.(2212-2214)ACC>ATC	p.T738I		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	738					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGCCTGCGTGGTAGTGATGAT	0.627													15	24					0	0	0.000422831	0	0
F8	2157	broad.mit.edu	37	X	154158605	154158605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:154158605C>T	uc004fmt.2	-	14	3631	c.3460G>A	c.(3460-3462)GAA>AAA	p.E1154K		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1154	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	ACAGATTTTTCTGGTCCTAAG	0.428													6	48					0	0	0.00198382	0	0
TMLHE	55217	broad.mit.edu	37	X	154774867	154774867	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrX:154774867G>T	uc004fnn.2	-	2	237	c.71C>A	c.(70-72)CCG>CAG	p.P24Q	TMLHE_uc004fno.2_Missense_Mutation_p.P24Q|TMLHE_uc004fnp.3_Missense_Mutation_p.P24Q	NM_018196	NP_060666	Q9NVH6	TMLH_HUMAN	trimethyllysine hydroxylase, epsilon	24					carnitine biosynthetic process	mitochondrial matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|trimethyllysine dioxygenase activity			ovary(1)	1	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Succinic acid(DB00139)|Vitamin C(DB00126)	TGGAAGGGCCGGATATATGAC	0.473													19	24					3.99206e-14	1.60986e-13	0.000958276	1	0
PCDH11Y	83259	broad.mit.edu	37	Y	5605694	5605694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrY:5605694C>T	uc004fqo.2	+	5	4468	c.3734C>T	c.(3733-3735)GCT>GTT	p.A1245V		NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	1245	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						TTAGCACAGGCTGCTGCAATC	0.567													6	42					0	0	0.00198382	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16952313	16952313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chrY:16952313C>T	uc004ftg.2	+	6	1874	c.1622C>T	c.(1621-1623)CCT>CTT	p.P541L	NLGN4Y_uc004fte.2_Missense_Mutation_p.P373L|NLGN4Y_uc011nas.1_Missense_Mutation_p.P561L|NLGN4Y_uc004ftf.2_Missense_Mutation_p.P234L|NLGN4Y_uc004fth.2_Missense_Mutation_p.P541L	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	541	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						CAACCAGTTCCTCAGGATACC	0.393													27	58					0	0	0.00209593	0	0
TRIM68	55128	broad.mit.edu	37	11	4626492	4626492	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr11:4626492delT	uc001lzf.1	-	2	481	c.243delA	c.(241-243)AAAfs	p.K81fs	TRIM68_uc001lzg.1_5'UTR|TRIM68_uc010qyj.1_Intron|TRIM68_uc009yek.1_Frame_Shift_Del_p.K81fs	NM_018073	NP_060543	Q6AZZ1	TRI68_HUMAN	ring finger protein 137	81					protein autoubiquitination|regulation of androgen receptor signaling pathway	Golgi apparatus|nucleolus|perinuclear region of cytoplasm	androgen receptor binding|histone acetyltransferase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;9.49e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		GCAGACGGACTTTTTCTACAA	0.537													8	126	---	---	---	---					
NIN	51199	broad.mit.edu	37	14	51210980	51210980	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr14:51210980delA	uc001wym.2	-	23	5359	c.5168delT	c.(5167-5169)TTAfs	p.L1723fs	NIN_uc001wyi.2_Frame_Shift_Del_p.L1723fs|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Frame_Shift_Del_p.L1010fs|NIN_uc010tqp.1_Frame_Shift_Del_p.L1729fs|NIN_uc001wyo.2_Frame_Shift_Del_p.L1723fs	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1723	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					ACAGCTATTTAATTCCTCACT	0.403			T	PDGFRB	MPD								14	142	---	---	---	---					
ZNF229	7772	broad.mit.edu	37	19	44934670	44934670	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr19:44934670delT	uc002oze.1	-	6	720	c.286delA	c.(286-288)AGGfs	p.R96fs	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Frame_Shift_Del_p.R90fs	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	96	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GAAAAGAACCTTAATTCTTCA	0.413													9	66	---	---	---	---					
GCC2	9648	broad.mit.edu	37	2	109087883	109087884	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr2:109087883_109087884insA	uc002tec.2	+	6	2252_2253	c.2098_2099insA	c.(2098-2100)GAAfs	p.E700fs	GCC2_uc002ted.2_Frame_Shift_Ins_p.E599fs	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	700	Potential.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						ACTCAGTTCAGAAAAAAAACAG	0.307													7	372	---	---	---	---					
MGAT3	4248	broad.mit.edu	37	22	39883513	39883513	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:39883513delC	uc003axv.3	+	2	400	c.161delC	c.(160-162)GCCfs	p.A54fs	MGAT3_uc010gxy.2_Frame_Shift_Del_p.A54fs	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	54	Lumenal (Potential).|Pro-rich.				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					TGGAACAATGCCCCGGTCACG	0.647													14	120	---	---	---	---					
C22orf26	55267	broad.mit.edu	37	22	46449723	46449723	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr22:46449723delA	uc003bgq.1	-	1	302	c.251delT	c.(250-252)TTGfs	p.L84fs	LOC150381_uc011aqw.1_5'Flank|LOC400931_uc003bgr.3_5'Flank	NM_018280	NP_060750	Q9NV39	CV026_HUMAN	hypothetical protein LOC55267	84	Pro-rich.										0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.0784)|LUAD - Lung adenocarcinoma(64;0.247)		AGGGTGGGGCAAACGCGGAGC	0.751													2	4	---	---	---	---					
EPHA5	2044	broad.mit.edu	37	4	66286237	66286238	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr4:66286237_66286238insT	uc003hcy.2	-	6	1641_1642	c.1448_1449insA	c.(1447-1449)AACfs	p.N483fs	EPHA5_uc003hcx.2_Frame_Shift_Ins_p.N414fs|EPHA5_uc003hcz.2_Frame_Shift_Ins_p.N483fs|EPHA5_uc011cah.1_Frame_Shift_Ins_p.N483fs|EPHA5_uc011cai.1_Frame_Shift_Ins_p.N483fs|EPHA5_uc003hda.2_Frame_Shift_Ins_p.N483fs	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	483	Extracellular (Potential).|Fibronectin type-III 2.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						AAGAGATGCTGTTTTTTGCAAT	0.347										TSP Lung(17;0.13)			18	73	---	---	---	---					
MAP3K5	4217	broad.mit.edu	37	6	137018478	137018478	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:137018478delT	uc003qhc.2	-	5	1215	c.854delA	c.(853-855)AATfs	p.N285fs	MAP3K5_uc011edk.1_Frame_Shift_Del_p.N130fs|MAP3K5_uc010kgw.1_Frame_Shift_Del_p.N285fs	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	285					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding			ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		AGTGTATAAATTACGAGCTTT	0.373													22	99	---	---	---	---					
CCDC28A	25901	broad.mit.edu	37	6	139097330	139097330	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3AA-06A-11D-A196-08	TCGA-EE-A3AA-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	91551b09-5767-4398-9aef-a73376286ca4	98958654-c8e7-42c9-be84-c406455832aa	g.chr6:139097330delA	uc003qie.2	+	2	498	c.343delA	c.(343-345)AAAfs	p.K115fs	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	115											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		TGTCAATGCCAAAAAAAATGC	0.413													9	104	---	---	---	---					
