Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PLEKHN1	84069	broad.mit.edu	37	1	909347	909347	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:909347G>A	uc001ace.2	+	13	1760	c.1725G>A	c.(1723-1725)AAG>AAA	p.K575K	PLEKHN1_uc001acd.2_Silent_p.K523K|PLEKHN1_uc001acf.2_Silent_p.K488K	NM_032129	NP_115505	Q494U1	PKHN1_HUMAN	pleckstrin homology domain containing, family N	575											0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.00095)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		TCTCCAAGAAGGGAGCCCTGC	0.701													3	12					0	0	0.004672	0	0
KIAA1751	85452	broad.mit.edu	37	1	1887175	1887175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:1887175C>T	uc001aim.1	-	18	2287	c.2131G>A	c.(2131-2133)GAG>AAG	p.E711K	KIAA1751_uc009vkz.1_Missense_Mutation_p.E711K	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	711										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		TTCTCCAGCTCCTTCCGGCTC	0.642													41	31					0	0	0.006999	0	0
MTOR	2475	broad.mit.edu	37	1	11199426	11199426	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:11199426G>A	uc001asd.2	-	36	5186	c.5065C>T	c.(5065-5067)CTG>TTG	p.L1689L		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1689	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						ACTGTTGGCAGAGGATGGTCA	0.463													74	51					0	0	0.003610	0	0
CLCN6	1185	broad.mit.edu	37	1	11898651	11898651	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:11898651C>T	uc001ate.3	+	22	2576	c.2463C>T	c.(2461-2463)TCC>TCT	p.S821S	CLCN6_uc010oat.1_Silent_p.S537S|CLCN6_uc010oau.1_Silent_p.S799S|CLCN6_uc010oav.1_5'Flank|CLCN6_uc010oaw.1_5'Flank|CLCN6_uc010oax.1_5'Flank|CLCN6_uc010oay.1_5'Flank|CLCN6_uc010oaz.1_5'Flank|CLCN6_uc010oba.1_5'Flank	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	821	CBS 2.|Cytoplasmic (By similarity).				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CCCACGTCTCCCAAGTCTTCA	0.612											OREG0013104	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	41					0	0	0.003163	0	0
VPS13D	55187	broad.mit.edu	37	1	12317070	12317070	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12317070C>T	uc001atv.2	+	9	1008	c.867C>T	c.(865-867)TTC>TTT	p.F289F	VPS13D_uc001atw.2_Silent_p.F289F	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	289					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TCATGGAATTCCTCAAGGAGC	0.423													35	35					0	0	0.003610	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835935	12835935	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12835935T>C	uc001aui.2	+	2	564	c.537T>C	c.(535-537)TGT>TGC	p.C179C		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	179										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGCACGTGTGTTGCAAGGAGC	0.507													43	31					0	0	0.002222	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12853392	12853392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12853392C>T	uc001auj.1	+	2	119	c.16C>T	c.(16-18)CCA>TCA	p.P6S		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	6											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CATCCAGGCCCCACCCAGACT	0.537													36	65					0	0	0.004878	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854324	12854324	+	Missense_Mutation	SNP	G	A	A	rs141259766		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12854324G>A	uc001auj.1	+	3	651	c.548G>A	c.(547-549)AGT>AAT	p.S183N		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	183											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CTGTGCTGTAGTAAGCTGGTC	0.403													123	144					0	0	0.003610	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12856020	12856020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12856020C>T	uc001auj.1	+	4	1403	c.1300C>T	c.(1300-1302)CGG>TGG	p.R434W		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	434											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACCCCACTTCGGGCTGAGCT	0.562													25	133					0	0	0.005524	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12888510	12888510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12888510C>T	uc001auk.2	-	2	210	c.14G>A	c.(13-15)AGC>AAC	p.S5N		NM_001146344	NP_001139816	O60813	PRA11_HUMAN	PRAME family member 11	5											0						GCGTCTCCTGCTGAAGGCCTC	0.642													47	42					0	0	0.003610	0	0
LOC649330	649330	broad.mit.edu	37	1	12907498	12907498	+	Silent	SNP	C	T	T	rs6702440		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12907498C>T	uc009vno.2	-	1	740	c.645G>A	c.(643-645)GTG>GTA	p.V215V	HNRNPCL1_uc010obf.1_Silent_p.V215V	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	215							nucleic acid binding|nucleotide binding				0						TAGCATTTTTCACCTCTACCT	0.448													38	29					0	0	0.003610	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12919953	12919953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12919953G>A	uc001aum.1	+	3	780	c.693G>A	c.(691-693)ATG>ATA	p.M231I		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	231											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGAAGGAGATGAAGACTCTTT	0.408													33	40					0	0	0.002836	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12942935	12942935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:12942935C>T	uc001aun.2	-	2	352	c.281G>A	c.(280-282)GGG>GAG	p.G94E		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	94										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGGACGAACCCCTAGGTTAAG	0.627													11	24					0	0	0.000978	0	0
TMEM51	55092	broad.mit.edu	37	1	15546025	15546025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:15546025C>T	uc001avw.3	+	4	1067	c.548C>T	c.(547-549)CCT>CTT	p.P183L	TMEM51_uc010obk.1_Missense_Mutation_p.P183L|TMEM51_uc001avz.2_3'UTR|TMEM51_uc001avy.2_Missense_Mutation_p.P183L|TMEM51_uc001avx.2_Missense_Mutation_p.P183L	NM_001136216	NP_001129688	Q9NW97	TMM51_HUMAN	transmembrane protein 51	183						integral to membrane					0		Renal(390;0.00145)|Breast(348;0.00186)|Colorectal(325;0.00215)|all_lung(284;0.00459)|Lung NSC(340;0.0104)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;2.07e-06)|COAD - Colon adenocarcinoma(227;7.14e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000175)|KIRC - Kidney renal clear cell carcinoma(229;0.00141)|STAD - Stomach adenocarcinoma(313;0.00644)|READ - Rectum adenocarcinoma(331;0.0751)		GAGGCCAGCCCTGGGAACCCC	0.552													17	46					0	0	0.001216	0	0
CLCNKB	1188	broad.mit.edu	37	1	16375068	16375068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:16375068C>T	uc001axw.3	+	7	726	c.646C>T	c.(646-648)CCC>TCC	p.P216S	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Missense_Mutation_p.P216S|CLCNKB_uc001axy.3_5'Flank	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	216	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CTTTGCAGCTCCCTTCAGCGG	0.647													9	26					0	0	0.006214	0	0
MST1P2	11209	broad.mit.edu	37	1	16975920	16975920	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:16975920C>T	uc010och.1	+	11		c.1942C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CACCCTGTTCCAGAACCCACA	0.582													10	69					0	0	0.002450	0	0
ATP13A2	23400	broad.mit.edu	37	1	17326935	17326935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:17326935G>A	uc001baa.2	-	9	990	c.800C>T	c.(799-801)TCC>TTC	p.S267F	ATP13A2_uc001bab.2_Missense_Mutation_p.S262F|ATP13A2_uc001bac.2_Missense_Mutation_p.S262F|ATP13A2_uc009vpa.1_5'Flank|ATP13A2_uc001bad.1_5'UTR	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	267	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		GGAGATGGAGGAAATGAGGAA	0.607													17	10					0	0	0.004990	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	17981152	17981152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:17981152C>T	uc001ban.2	+	23	2575	c.2416C>T	c.(2416-2418)CCT>TCT	p.P806S	ARHGEF10L_uc009vpe.1_Missense_Mutation_p.P767S|ARHGEF10L_uc001bao.2_Missense_Mutation_p.P767S|ARHGEF10L_uc001bap.2_Missense_Mutation_p.P762S|ARHGEF10L_uc001baq.2_Missense_Mutation_p.P567S|ARHGEF10L_uc010ocs.1_Missense_Mutation_p.P579S|ARHGEF10L_uc001bar.2_Missense_Mutation_p.P509S|ARHGEF10L_uc009vpf.2_RNA	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	806					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		GGTCCACAGTCCTGTCAACTG	0.532													100	118					0	0	0.003610	0	0
UBR4	23352	broad.mit.edu	37	1	19477183	19477183	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:19477183A>C	uc001bbi.2	-	49	7322	c.7318T>G	c.(7318-7320)TTC>GTC	p.F2440V	UBR4_uc001bbk.1_Missense_Mutation_p.F94V	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2440					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GCAGAAGGGAATTCTTCTGGG	0.532													58	142					0	0	0.003610	0	0
PLA2G2E	30814	broad.mit.edu	37	1	20249233	20249233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:20249233C>T	uc001bct.1	-	2	114	c.56G>A	c.(55-57)GGG>GAG	p.G19E		NM_014589	NP_055404	Q9NZK7	PA2GE_HUMAN	phospholipase A2, group IIE precursor	19					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|GBM - Glioblastoma multiforme(114;0.000146)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AACCAGGTTCCCGGTGACCAG	0.502													9	40					0	0	0.000673	0	0
PLA2G5	5322	broad.mit.edu	37	1	20412625	20412625	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:20412625G>A	uc001bcy.2	+	3	358	c.90G>A	c.(88-90)GAG>GAA	p.E30E	PLA2G5_uc001bcw.2_RNA|PLA2G5_uc001bcx.2_Silent_p.E61E	NM_000929	NP_000920	P39877	PA2G5_HUMAN	phospholipase A2, group V precursor	30					lipid catabolic process	extracellular region	calcium ion binding|calcium-dependent phospholipase A2 activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000249)|Lung NSC(340;0.000287)|Breast(348;0.000812)|Ovarian(437;0.00328)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;8.15e-05)|Kidney(64;0.000184)|GBM - Glioblastoma multiforme(114;0.00089)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0652)		CAATGATCGAGAAGGTGACAG	0.597													11	37					0	0	0.000978	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21928204	21928204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:21928204G>A	uc001bex.2	-	20	1883	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F	RAP1GAP_uc001bev.2_Missense_Mutation_p.S627F|RAP1GAP_uc001bew.2_Missense_Mutation_p.S606F|RAP1GAP_uc001bey.2_Missense_Mutation_p.S568F	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	542					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		CATCTCTGGGGAGCTCTGAGT	0.667													35	21					0	0	0.004878	0	0
HSPG2	3339	broad.mit.edu	37	1	22206620	22206620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:22206620G>A	uc001bfj.2	-	17	2363	c.2323C>T	c.(2323-2325)CCT>TCT	p.P775S	HSPG2_uc009vqd.2_Missense_Mutation_p.P776S	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	775	Laminin EGF-like 2.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCATACACAGGGTCACAGGAG	0.522													11	57					0	0	0.000978	0	0
EPHB2	2048	broad.mit.edu	37	1	23239983	23239983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:23239983G>A	uc009vqj.1	+	16	3026	c.2881G>A	c.(2881-2883)GCT>ACT	p.A961T	EPHB2_uc001bge.2_Missense_Mutation_p.A962T|EPHB2_uc001bgf.2_Missense_Mutation_p.A961T|EPHB2_uc010odu.1_Missense_Mutation_p.A903T	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	961	Cytoplasmic (Potential).|SAM.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GGTCACTTTGGCTGGCCACCA	0.542									Hereditary_Prostate_Cancer				15	22					0	0	0.003163	0	0
SFN	2810	broad.mit.edu	37	1	27190040	27190040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:27190040G>A	uc001bnc.1	+	1	408	c.337G>A	c.(337-339)GAC>AAC	p.D113N	uc010ofi.1_RNA	NM_006142	NP_006133	P31947	1433S_HUMAN	stratifin	113					DNA damage response, signal transduction resulting in induction of apoptosis|negative regulation of caspase activity|release of cytochrome c from mitochondria	cytoplasm|extracellular space|nucleus	protein domain specific binding|protein kinase C inhibitor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.1e-52)|Epithelial(14;2.31e-52)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)|GBM - Glioblastoma multiforme(114;0.0767)|Lung(427;0.215)		GGAGGCCGGGGACGCCGAGAG	0.632													29	21					0	0	0.001512	0	0
SMPDL3B	27293	broad.mit.edu	37	1	28280972	28280972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:28280972G>A	uc001bpg.2	+	5	816	c.625G>A	c.(625-627)GAC>AAC	p.D209N	SMPDL3B_uc001bpf.2_Missense_Mutation_p.D209N|SMPDL3B_uc010ofq.1_Missense_Mutation_p.D3N|SMPDL3B_uc010ofr.1_Missense_Mutation_p.D161N	NM_014474	NP_055289	Q92485	ASM3B_HUMAN	acid sphingomyelinase-like phosphodiesterase 3B	209					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity			ovary(3)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000431)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;5.68e-24)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00587)|READ - Rectum adenocarcinoma(331;0.055)		AGACATGGCGGACCCTGGCCA	0.567													73	62					0	0	0.003610	0	0
EPB41	2035	broad.mit.edu	37	1	29365861	29365861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:29365861C>T	uc001brm.1	+	10	1566	c.1559C>T	c.(1558-1560)GCT>GTT	p.A520V	EPB41_uc001brg.1_Missense_Mutation_p.A311V|EPB41_uc001brh.1_Missense_Mutation_p.A311V|EPB41_uc001bri.1_Missense_Mutation_p.A485V|EPB41_uc001brj.1_Missense_Mutation_p.A311V|EPB41_uc009vtk.1_Missense_Mutation_p.A485V|EPB41_uc001brk.2_Missense_Mutation_p.A520V|EPB41_uc001brl.1_Missense_Mutation_p.A520V|EPB41_uc009vtl.1_Missense_Mutation_p.A311V|EPB41_uc009vtm.1_Missense_Mutation_p.A153V	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	520	Hydrophilic.				blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		ACCAGGCAAGCTAGTGCTCTA	0.488													7	44					0	0	0.001984	0	0
PTPRU	10076	broad.mit.edu	37	1	29639145	29639145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:29639145G>A	uc001bru.2	+	23	3294	c.3184G>A	c.(3184-3186)GGG>AGG	p.G1062R	PTPRU_uc001brv.2_Missense_Mutation_p.G1058R|PTPRU_uc001brw.2_Missense_Mutation_p.G1052R|PTPRU_uc009vtq.2_Missense_Mutation_p.G1058R|PTPRU_uc009vtr.2_Missense_Mutation_p.G1049R	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1062	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CCATGCCACGGGGCTGCTGGC	0.647													8	19					0	0	0.003080	0	0
CSMD2	114784	broad.mit.edu	37	1	34080130	34080130	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:34080130C>T	uc001bxn.1	-	40	6016	c.5987G>A	c.(5986-5988)TGG>TAG	p.W1996*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.W2036*|CSMD2_uc001bxo.1_Nonsense_Mutation_p.W909*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1996	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCTATTTTCCAGGAGCAGTC	0.433													7	15					0	0	0.004482	0	0
CSMD2	114784	broad.mit.edu	37	1	34190255	34190255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:34190255C>T	uc001bxn.1	-	18	2655	c.2626G>A	c.(2626-2628)GGA>AGA	p.G876R	CSMD2_uc001bxm.1_Missense_Mutation_p.G916R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	876	Sushi 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGACGCTGTCCATTTACTGGG	0.542													11	30					0	0	0.000673	0	0
CSMD2	114784	broad.mit.edu	37	1	34190264	34190264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:34190264G>A	uc001bxn.1	-	18	2646	c.2617C>T	c.(2617-2619)CCA>TCA	p.P873S	CSMD2_uc001bxm.1_Missense_Mutation_p.P913S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	873	Sushi 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCATTTACTGGGATTCCTGGA	0.547													9	28					0	0	0.006214	0	0
COL8A2	1296	broad.mit.edu	37	1	36565053	36565053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:36565053C>T	uc001bzv.1	-	2	236	c.229G>A	c.(229-231)GGA>AGA	p.G77R	COL8A2_uc001bzw.1_Missense_Mutation_p.G12R	NM_005202	NP_005193	P25067	CO8A2_HUMAN	collagen, type VIII, alpha 2 precursor	77	Triple-helical region.				angiogenesis|cell-cell adhesion|extracellular matrix organization	basement membrane|collagen	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCGGGCTCTCCCTTCAGGTCC	0.652													4	2					0	0	0.000602	0	0
NDUFS5	4725	broad.mit.edu	37	1	39500128	39500128	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:39500128C>T	uc001ccx.2	+	3	352	c.281C>T	c.(280-282)CCT>CTT	p.P94L	NDUFS5_uc001ccy.2_Missense_Mutation_p.P94L	NM_004552	NP_004543	O43920	NDUS5_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 5,	94					mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.93e-18)		NADH(DB00157)	AAGTACACCCCTCCACCTCAC	0.512													10	26					0	0	0.000673	0	0
MACF1	23499	broad.mit.edu	37	1	39801408	39801409	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:39801408_39801409CC>TT	uc010oiu.1	+	1	4599_4600	c.4468_4469CC>TT	c.(4468-4470)CCT>TTT	p.P1490F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3055					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CCAAGTGGTACCTCAAGGAATT	0.356													6	28					0	0	0.004672	0	0
GUCA2B	2981	broad.mit.edu	37	1	42621240	42621240	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:42621240G>A	uc001chc.1	+	3	342	c.312G>A	c.(310-312)GTG>GTA	p.V104V		NM_007102	NP_009033	Q16661	GUC2B_HUMAN	guanylate cyclase activator 2B precursor	104					excretion	extracellular region	calcium sensitive guanylate cyclase activator activity				0	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGCTGTGTGTGAACGTTGCGT	0.627													16	49					0	0	0.001523	0	0
RIMKLA	284716	broad.mit.edu	37	1	42865257	42865257	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:42865257C>T	uc001chi.2	+	2	484	c.346C>T	c.(346-348)CAA>TAA	p.Q116*		NM_173642	NP_775913	Q8IXN7	RIMKA_HUMAN	ribosomal modification protein rimK-like family	116	ATP-grasp.				protein modification process	cytoplasm	acid-amino acid ligase activity|ATP binding|metal ion binding				0						CTGGACGTTCCAAGAACTGGC	0.502													16	6					0	0	0.006122	0	0
TIE1	7075	broad.mit.edu	37	1	43779609	43779609	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:43779609G>A	uc001ciu.2	+	14	2458	c.2379G>A	c.(2377-2379)CGG>CGA	p.R793R	TIE1_uc010oke.1_Silent_p.R748R|TIE1_uc009vwq.2_Silent_p.R749R|TIE1_uc010okf.1_Silent_p.R438R|TIE1_uc010okg.1_Silent_p.R438R	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	793	Cytoplasmic (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCCTGCATCGGAGACGCACCT	0.612													4	32					0	0	0.000248	0	0
EIF2B3	8891	broad.mit.edu	37	1	45341351	45341351	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:45341351G>T	uc001cmt.1	-	9	1119	c.992C>A	c.(991-993)TCT>TAT	p.S331Y	EIF2B3_uc001cmu.1_Missense_Mutation_p.S331Y|EIF2B3_uc001cmv.1_Intron|EIF2B3_uc001cmw.2_Missense_Mutation_p.S331Y	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	331					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACAGAGAGCAGACAGCAATTT	0.403													15	50					1.67942e-08	2.12916e-08	0.006122	1	0
FAAH	2166	broad.mit.edu	37	1	46871062	46871062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:46871062G>A	uc001cpu.2	+	4	545	c.463G>A	c.(463-465)GGC>AGC	p.G155S	FAAH_uc001cpv.2_5'Flank	NM_001441	NP_001432	O00519	FAAH1_HUMAN	fatty acid amide hydrolase	155	Cytoplasmic (By similarity).				fatty acid catabolic process	cytoplasm|cytoskeleton|endomembrane system|integral to membrane|organelle membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|fatty acid amide hydrolase activity			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(166;0.155)				Propofol(DB00818)|Thiopental(DB00599)	CTCCACGCTGGGCTTGAGCCT	0.637													40	38					0	0	0.002222	0	0
DMBX1	127343	broad.mit.edu	37	1	46978015	46978015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:46978015G>A	uc001cpx.2	+	4	1013	c.998G>A	c.(997-999)GGT>GAT	p.G333D	DMBX1_uc001cpw.2_Missense_Mutation_p.G328D	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	333					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GCCCACCAGGGTGTGTGGGGG	0.642													10	19					0	0	0.006214	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47348960	47348960	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:47348960C>T	uc001cqo.1	-	5		c.542G>A			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TGTGTTCCTCCCATTTGTTCT	0.468													12	14					0	0	0.002450	0	0
CYP4A11	1579	broad.mit.edu	37	1	47398709	47398709	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:47398709G>A	uc001cqp.3	-	10	1284	c.1233C>T	c.(1231-1233)GTC>GTT	p.V411V	CYP4A11_uc001cqq.2_Silent_p.V411V	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	411				MVL -> TVM (in Ref. 9; CAA50586).	long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TGGAGAGGAGGACCATGATAC	0.517													92	81					0	0	0.003610	0	0
CYP4A11	1579	broad.mit.edu	37	1	47402414	47402415	+	Missense_Mutation	DNP	CC	TT	TT	rs148717576		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:47402414_47402415CC>TT	uc001cqp.3	-	4	482_483	c.431_432GG>AA	c.(430-432)CGG>CAA	p.R144Q	CYP4A11_uc001cqq.2_Missense_Mutation_p.R144Q|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	144					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GGGTCAGCATCCGTCGATGCTG	0.446													10	16					0	0	0.004672	0	0
SLC5A9	200010	broad.mit.edu	37	1	48701516	48701516	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:48701516G>A	uc001cro.2	+	10	1309	c.1257G>A	c.(1255-1257)AGG>AGA	p.R419R	SLC5A9_uc010oms.1_RNA|SLC5A9_uc001crn.2_Silent_p.R444R|SLC5A9_uc010omt.1_Silent_p.R433R|SLC5A9_uc001crp.2_Silent_p.R86R|SLC5A9_uc010omu.1_Silent_p.R86R	NM_001011547	NP_001011547	Q2M3M2	SC5A9_HUMAN	solute carrier family 5 (sodium/glucose	419	Cytoplasmic (Potential).					integral to membrane|plasma membrane	low-affinity glucose:sodium symporter activity			ovary(3)	3						GCTTCCGCAGGAAGTCAACAG	0.612													13	36					0	0	0.002450	0	0
ELAVL4	1996	broad.mit.edu	37	1	50661245	50661245	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:50661245G>A	uc001csb.2	+	5	789	c.521G>A	c.(520-522)GGG>GAG	p.G174E	ELAVL4_uc001cry.3_Missense_Mutation_p.G177E|ELAVL4_uc001crz.3_Missense_Mutation_p.G174E|ELAVL4_uc001csa.3_Missense_Mutation_p.G191E|ELAVL4_uc001csc.3_Missense_Mutation_p.G174E|ELAVL4_uc009vyu.2_Missense_Mutation_p.G179E|ELAVL4_uc010omz.1_Missense_Mutation_p.G179E	NM_021952	NP_068771	P26378	ELAV4_HUMAN	ELAV-like 4 isoform 1	174	RRM 2.				mRNA processing		AU-rich element binding|mRNA 3'-UTR binding|nucleotide binding			ovary(1)|pancreas(1)	2						GTGTCCAGAGGGGTGGGATTC	0.498													17	44					0	0	0.001216	0	0
SLC1A7	6512	broad.mit.edu	37	1	53556325	53556325	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:53556325G>A	uc001cuy.2	-	8	1353	c.1185C>T	c.(1183-1185)GTC>GTT	p.V395V	SLC1A7_uc001cux.2_5'UTR	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	395						integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	CGTAGTTGTTGACCTGGGCGA	0.642													14	12					0	0	0.004007	0	0
LRP8	7804	broad.mit.edu	37	1	53723019	53723019	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:53723019T>G	uc001cvi.1	-	15	2469	c.2327A>C	c.(2326-2328)GAG>GCG	p.E776A	LRP8_uc001cvh.1_Missense_Mutation_p.E329A|LRP8_uc001cvk.1_Missense_Mutation_p.E606A|LRP8_uc001cvj.1_Missense_Mutation_p.E776A|LRP8_uc001cvl.1_Intron|LRP8_uc001cvm.1_Missense_Mutation_p.E361A	NM_004631	NP_004622	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein	776	Clustered O-linked oligosaccharides.|Extracellular (Potential).				cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity				0						GCTTGGTGTCTCTGTGCTGTG	0.592													12	15					0	0	0.000978	0	0
FAM151A	338094	broad.mit.edu	37	1	55088965	55088965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:55088965G>A	uc001cxn.2	-	1	236	c.104C>T	c.(103-105)ACC>ATC	p.T35I	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	35						integral to membrane					0						CCGCCGCAGGGTGATGGCAAG	0.562													15	44					0	0	0.004007	0	0
C1orf175	374977	broad.mit.edu	37	1	55145668	55145668	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:55145668C>T	uc010ooe.1	+	13	2655	c.2331C>T	c.(2329-2331)TTC>TTT	p.F777F	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Silent_p.F345F|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.F295F|C1orf175_uc010oof.1_Intron|C1orf175_uc001cxr.1_Intron|C1orf175_uc010oog.1_Silent_p.F777F|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_5'Flank	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	777	Helical; (Potential).					integral to membrane	binding				0						CTAGCTCCTTCATGACCGAGG	0.607													43	98					0	0	0.002852	0	0
C1orf177	163747	broad.mit.edu	37	1	55282787	55282787	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:55282787G>C	uc001cyb.3	+	9	1230	c.1176G>C	c.(1174-1176)ATG>ATC	p.M392I	C1orf177_uc001cya.3_Missense_Mutation_p.M392I	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	392											0						CCCGGGACATGCTCATGCAGT	0.602													12	23					0	0	0.000978	0	0
PRKAA2	5563	broad.mit.edu	37	1	57161759	57161759	+	Missense_Mutation	SNP	C	T	T	rs141766544		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:57161759C>T	uc001cyk.3	+	6	786	c.715C>T	c.(715-717)CGT>TGT	p.R239C		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	239	Protein kinase.				carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding	p.R239C(1)		breast(4)|ovary(1)|stomach(1)	6						ATATCTCAATCGTTCTGTCGC	0.428													49	146					0	0	0.003610	0	0
C8B	732	broad.mit.edu	37	1	57399065	57399065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:57399065C>T	uc001cyp.2	-	10	1562	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K	C8B_uc010oon.1_Missense_Mutation_p.E437K|C8B_uc010ooo.1_Missense_Mutation_p.E447K	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	499	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GAACTAACTTCCTTCTGGAAC	0.527													29	22					0	0	0.007291	0	0
C8B	732	broad.mit.edu	37	1	57417763	57417763	+	Silent	SNP	C	T	T	rs148088012		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:57417763C>T	uc001cyp.2	-	5	691	c.624G>A	c.(622-624)ACG>ACA	p.T208T	C8B_uc010oon.1_Silent_p.T146T|C8B_uc010ooo.1_Silent_p.T156T	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	208	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TCCTAAACCTCGTGTTCAGGA	0.338													14	50					0	0	0.004007	0	0
DAB1	1600	broad.mit.edu	37	1	57611022	57611022	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:57611022C>T	uc001cys.1	-	5	822	c.148G>A	c.(148-150)GAT>AAT	p.D50N	DAB1_uc001cyt.1_Missense_Mutation_p.D50N|DAB1_uc001cyq.1_Missense_Mutation_p.D50N|DAB1_uc001cyr.1_Missense_Mutation_p.D50N|DAB1_uc009vzw.1_Missense_Mutation_p.D50N|DAB1_uc009vzx.1_Missense_Mutation_p.D50N	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	50	PID.				cell differentiation|nervous system development					skin(2)|ovary(1)	3						GAAACTTCATCAATCCCGATC	0.408													26	22					0	0	0.004656	0	0
DAB1	1600	broad.mit.edu	37	1	57611094	57611094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:57611094G>A	uc001cys.1	-	5	750	c.76C>T	c.(76-78)CGC>TGC	p.R26C	DAB1_uc001cyt.1_Missense_Mutation_p.R26C|DAB1_uc001cyq.1_Missense_Mutation_p.R26C|DAB1_uc001cyr.1_Missense_Mutation_p.R26C|DAB1_uc009vzw.1_Missense_Mutation_p.R26C|DAB1_uc009vzx.1_Missense_Mutation_p.R26C	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	26					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCTTCACTGCGATCCTGACCT	0.458													17	20					0	0	0.004990	0	0
INADL	10207	broad.mit.edu	37	1	62626602	62626602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:62626602G>A	uc001dab.2	+	43	5515	c.5401G>A	c.(5401-5403)GAT>AAT	p.D1801N	INADL_uc001dac.2_RNA|INADL_uc009wag.2_Intron	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	1801					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GATGACGGCCGATTAAAACGA	0.413													5	23					0	0	0.001168	0	0
DNAJC6	9829	broad.mit.edu	37	1	65878698	65878698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:65878698C>T	uc001dcd.1	+	19	2896	c.2732C>T	c.(2731-2733)CCC>CTC	p.P911L	DNAJC6_uc010opc.1_Missense_Mutation_p.P898L|DNAJC6_uc001dce.1_Missense_Mutation_p.P968L	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	911	J.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						GGCCAAAAGCCCTTATATTAA	0.418													38	43					0	0	0.004878	0	0
SLC44A5	204962	broad.mit.edu	37	1	75684294	75684294	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:75684294G>A	uc001dgu.2	-	17	1554	c.1410C>T	c.(1408-1410)TTC>TTT	p.F470F	SLC44A5_uc001dgt.2_Silent_p.F470F|SLC44A5_uc001dgs.2_Silent_p.F428F|SLC44A5_uc001dgr.2_Silent_p.F428F|SLC44A5_uc010oqz.1_Silent_p.F509F|SLC44A5_uc010ora.1_Silent_p.F464F|SLC44A5_uc010orb.1_Silent_p.F340F	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	470	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						ATGCAATGACGAAGTTTATAA	0.418													14	35					0	0	0.004007	0	0
IFI44L	10964	broad.mit.edu	37	1	79094005	79094005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:79094005G>A	uc010oro.1	+	2	584	c.405G>A	c.(403-405)ATG>ATA	p.M135I	IFI44L_uc010orp.1_Intron|IFI44L_uc010orq.1_Intron	NM_006820	NP_006811	Q53G44	IF44L_HUMAN	interferon-induced protein 44-like	135						cytoplasm					0						TAGATAAAATGATAACAAGAA	0.308													6	15					0	0	0.001168	0	0
IFI44L	10964	broad.mit.edu	37	1	79095560	79095560	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:79095560A>T	uc010oro.1	+	4	862	c.683A>T	c.(682-684)CAA>CTA	p.Q228L	IFI44L_uc010orp.1_5'UTR|IFI44L_uc010orq.1_Intron	NM_006820	NP_006811	Q53G44	IF44L_HUMAN	interferon-induced protein 44-like	228						cytoplasm					0						GTGACTGGCCAAGCCGTAGTG	0.393													16	18					0	0	0.006122	0	0
LPHN2	23266	broad.mit.edu	37	1	82456075	82456075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:82456075G>A	uc001dit.3	+	21	3639	c.3458G>A	c.(3457-3459)GGA>GAA	p.G1153E	LPHN2_uc001dis.2_Missense_Mutation_p.R133K|LPHN2_uc001diu.2_Missense_Mutation_p.G1153E|LPHN2_uc001div.2_3'UTR|LPHN2_uc009wcd.2_Missense_Mutation_p.D1121N|LPHN2_uc001diw.2_Missense_Mutation_p.G780E	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1209	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		TCTGTTTCAGGACATTCACTG	0.398													22	22					0	0	0.003954	0	0
WDR63	126820	broad.mit.edu	37	1	85573801	85573801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:85573801C>T	uc001dkt.2	+	15	1830	c.1639C>T	c.(1639-1641)CCT>TCT	p.P547S	WDR63_uc009wcl.2_Missense_Mutation_p.P508S	NM_145172	NP_660155	Q8IWG1	WDR63_HUMAN	WD repeat domain 63	547										upper_aerodigestive_tract(2)|ovary(2)|skin(1)	5				all cancers(265;0.00391)|Epithelial(280;0.00922)|Colorectal(170;0.166)		TATTGAAATTCCTTTTGATGT	0.358													7	52					0	0	0.003080	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94643687	94643687	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:94643687G>A	uc001dqj.3	-	21	2886	c.2517C>T	c.(2515-2517)TCC>TCT	p.S839S	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dqk.2_Silent_p.S405S	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	839	Rho-GAP.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		CCAAGTTTTTGGAGTTCATCT	0.413													9	44					0	0	0.000673	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668540	94668540	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:94668540C>T	uc001dqj.3	-	10	1257	c.888G>A	c.(886-888)AGG>AGA	p.R296R	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Silent_p.R296R	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	296	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TTTCATTTTTCCTTCCAAGTA	0.294													11	54					0	0	0.001368	0	0
DPYD	1806	broad.mit.edu	37	1	97770877	97770877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:97770877G>A	uc001drv.2	-	18	2374	c.2237C>T	c.(2236-2238)TCT>TTT	p.S746F		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	746					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TGTGCCATCAGATTTTAATCC	0.478													4	21					0	0	0.000248	0	0
DPYD	1806	broad.mit.edu	37	1	98039340	98039340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:98039340C>T	uc001drv.2	-	11	1452	c.1315G>A	c.(1315-1317)GGT>AGT	p.G439S		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	439					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	AGAACTGAACCAAAGGCACTG	0.423													9	38					0	0	0.004482	0	0
OLFM3	118427	broad.mit.edu	37	1	102270231	102270231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:102270231G>A	uc001duf.2	-	6	1071	c.1000C>T	c.(1000-1002)CAT>TAT	p.H334Y	OLFM3_uc001dug.2_Missense_Mutation_p.H314Y|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Missense_Mutation_p.H239Y|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	334	Olfactomedin-like.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		TAAACATTATGAAAACCAGCA	0.443													7	2					0	0	0.001984	0	0
AMY2B	280	broad.mit.edu	37	1	104121965	104121965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:104121965C>T	uc001duq.2	+	12	1995	c.1379C>T	c.(1378-1380)CCT>CTT	p.P460L	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.P460L|AMY2B_uc001dus.1_Intron	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	460					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		ACTGGTCTTCCTGCTGGCACA	0.338													43	346					0	0	0.002522	0	0
AMY1A	276	broad.mit.edu	37	1	104297230	104297230	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:104297230T>G	uc001duy.2	+	7	1202	c.988T>G	c.(988-990)TTC>GTC	p.F330V	AMY1A_uc001duz.2_Missense_Mutation_p.F330V	NM_001008221	NP_001008222	P04745	AMY1_HUMAN	salivary amylase alpha 1A precursor	330					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding|protein binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0654)|all cancers(265;0.0808)|Epithelial(280;0.0921)|Lung(183;0.111)		TATACTTACCTTCTGGGATGC	0.388													50	150					0	0	0.003610	0	0
ATP5F1	515	broad.mit.edu	37	1	111996918	111996918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:111996918C>T	uc001ebc.2	+	3	584	c.163C>T	c.(163-165)CGT>TGT	p.R55C	ATP5F1_uc009wgf.1_Missense_Mutation_p.R202C|ATP5F1_uc001ebd.3_Intron	NM_001688	NP_001679	P24539	AT5F1_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	55					ATP catabolic process|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transporting ATP synthase activity, rotational mechanism|protein binding				0		all_cancers(81;8.16e-06)|all_epithelial(167;5.63e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|Colorectal(144;0.0296)|all cancers(265;0.0488)|Epithelial(280;0.0732)|COAD - Colon adenocarcinoma(174;0.114)|LUSC - Lung squamous cell carcinoma(189;0.135)		AGGAAAAGTTCGTTATGGACT	0.438													39	14					0	0	0.004289	0	0
TTF2	8458	broad.mit.edu	37	1	117629057	117629057	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:117629057C>T	uc001egy.2	+	12	2093	c.2073C>T	c.(2071-2073)ATC>ATT	p.I691I		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	691	Helicase ATP-binding.				mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		CATATGACATCGTGATCACTA	0.468													7	19					0	0	0.001984	0	0
SPAG17	200162	broad.mit.edu	37	1	118548083	118548083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:118548083G>A	uc001ehk.2	-	32	4798	c.4730C>T	c.(4729-4731)TCA>TTA	p.S1577L		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1577						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GATAACCTCTGAAGTATGCCT	0.453													35	14					0	0	0.007835	0	0
TBX15	6913	broad.mit.edu	37	1	119427608	119427608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:119427608C>T	uc001ehl.1	-	8	1553	c.1238G>A	c.(1237-1239)GGA>GAA	p.G413E	TBX15_uc009whj.1_Missense_Mutation_p.G237E	NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	519						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		GAAATTGTATCCATACAGGTT	0.537													11	5					0	0	0.000978	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144864151	144864151	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:144864151G>A	uc001elw.3	-	36	6235	c.5944C>T	c.(5944-5946)CAG>TAG	p.Q1982*	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Nonsense_Mutation_p.Q1876*|PDE4DIP_uc001elv.3_Nonsense_Mutation_p.Q989*|PDE4DIP_uc001ema.2_Nonsense_Mutation_p.Q169*	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1982	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCGTTTTCCTGGAGGGAAAGA	0.453			T	PDGFRB	MPD								46	248					0	0	0.003610	0	0
LOC728989	728989	broad.mit.edu	37	1	146495617	146495617	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:146495617C>T	uc001epd.2	-	3	389	c.315G>A	c.(313-315)GTG>GTA	p.V105V		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						ACGCTGATCTCACAAGAGACA	0.512													7	8					0	0	0.000673	0	0
SV2A	9900	broad.mit.edu	37	1	149880793	149880793	+	Missense_Mutation	SNP	G	A	A	rs117711516	by1000genomes	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:149880793G>A	uc001etg.2	-	8	1821	c.1330C>T	c.(1330-1332)CGG>TGG	p.R444W	SV2A_uc009wlk.2_5'Flank|SV2A_uc001eth.2_Missense_Mutation_p.R444W	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	444	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GTGATGCGCCGATATTCGGGA	0.512													32	34					0	0	0.006230	0	0
SV2A	9900	broad.mit.edu	37	1	149885219	149885219	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:149885219G>A	uc001etg.2	-	2	665	c.174C>T	c.(172-174)TTC>TTT	p.F58F	SV2A_uc001eth.2_Silent_p.F58F	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	58	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	TGGGAGCAGGGAAGTCATCAT	0.547													21	59					0	0	0.002780	0	0
TCHH	7062	broad.mit.edu	37	1	152086483	152086483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:152086483C>T	uc001ezp.2	-	1	74	c.74G>A	c.(73-75)GGA>GAA	p.G25E	TCHH_uc009wne.1_Missense_Mutation_p.G25E	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	25	1; low affinity (Potential).|EF-hand 1.|S-100-like.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TAATGCTGCTCCATCACAATC	0.378													38	26					0	0	0.006230	0	0
RPTN	126638	broad.mit.edu	37	1	152127734	152127734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:152127734C>T	uc001ezs.1	-	3	1906	c.1841G>A	c.(1840-1842)GGA>GAA	p.G614E		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	614	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						CCCTGATCTTCCTGATTGTTC	0.478													45	45					0	0	0.003214	0	0
FLG	2312	broad.mit.edu	37	1	152284394	152284394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:152284394C>T	uc001ezu.1	-	3	3004	c.2968G>A	c.(2968-2970)GAA>AAA	p.E990K	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	990	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTCTGTCTTCGTGATGGGAC	0.572									Ichthyosis				90	82					0	0	0.003610	0	0
CRNN	49860	broad.mit.edu	37	1	152382405	152382405	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:152382405G>A	uc001ezx.2	-	3	1227	c.1153C>T	c.(1153-1155)CAA>TAA	p.Q385*		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	385	Gln-rich.				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCATCTTTGACCACTGCCT	0.597													26	68					0	0	0.004656	0	0
CRNN	49860	broad.mit.edu	37	1	152384617	152384617	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:152384617C>T	uc001ezx.2	-	2	167	c.93G>A	c.(91-93)GGG>GGA	p.G31G		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	31					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTTTCAGCTCCCCTCGGGTGA	0.542													28	43					0	0	0.007291	0	0
S100A8	6279	broad.mit.edu	37	1	153362891	153362891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:153362891C>T	uc001fbs.2	-	2	176	c.121G>A	c.(121-123)GAG>AAG	p.E41K		NM_002964	NP_002955	P05109	S10A8_HUMAN	S100 calcium-binding protein A8	41	EF-hand 1.				chemotaxis	cytoplasm|cytoskeleton|plasma membrane	calcium ion binding|protein binding				0	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			TGAGGACACTCGGTCTCTAGC	0.582													44	39					0	0	0.003214	0	0
BGLAP	632	broad.mit.edu	37	1	156212553	156212553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:156212553C>T	uc001fnt.2	+	3	176	c.104C>T	c.(103-105)GCC>GTC	p.A35V	BGLAP_uc001fns.1_Silent_p.S136S	NM_199173	NP_954642	P02818	OSTCN_HUMAN	osteocalcin preproprotein	35					bone mineralization|cell adhesion|odontogenesis|regulation of bone mineralization|regulation of bone resorption|regulation of osteoclast differentiation		calcium ion binding|hydroxyapatite binding|structural constituent of bone				0	Hepatocellular(266;0.158)				Phytonadione(DB01022)	TGCTCCACAGCCTTTGTGTCC	0.622													21	25					0	0	0.002299	0	0
NES	10763	broad.mit.edu	37	1	156639958	156639958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:156639958C>T	uc001fpq.2	-	4	4155	c.4022G>A	c.(4021-4023)GGC>GAC	p.G1341D		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1341	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGCCTCAAGGCCCTCGGAAGC	0.537													26	53					0	0	0.004656	0	0
NES	10763	broad.mit.edu	37	1	156641818	156641818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:156641818G>A	uc001fpq.2	-	4	2295	c.2162C>T	c.(2161-2163)CCA>CTA	p.P721L		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	721	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGTCTTCAGTGGCTCCTGGTT	0.448													31	71					0	0	0.002096	0	0
INSRR	3645	broad.mit.edu	37	1	156821105	156821105	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:156821105G>A	uc010pht.1	-	5	1460	c.1206C>T	c.(1204-1206)ATC>ATT	p.I402I	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.P473S	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	402					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CGTCTCCCCGGATTAGTTTGA	0.478													140	124					0	0	0.003610	0	0
CD1A	909	broad.mit.edu	37	1	158225874	158225874	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158225874C>T	uc001frt.2	+	3	939	c.406C>T	c.(406-408)CAA>TAA	p.Q136*		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	136	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	GTTAGCTTATCAAGGATCAGA	0.458													32	20					0	0	0.002445	0	0
CD1E	913	broad.mit.edu	37	1	158325184	158325184	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158325184C>T	uc001fse.2	+	3	689	c.450C>T	c.(448-450)TTC>TTT	p.F150F	CD1E_uc010pid.1_Silent_p.F148F|CD1E_uc010pie.1_Silent_p.F51F|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Silent_p.F150F|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Silent_p.F150F|CD1E_uc001fry.2_Silent_p.F150F|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Silent_p.F150F|CD1E_uc009wsv.2_Silent_p.F51F|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	150					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					TCCTGAGTTTCCAAGGAATTT	0.453													19	77					0	0	0.007413	0	0
CD1E	913	broad.mit.edu	37	1	158325781	158325781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158325781G>A	uc001fse.2	+	4	1029	c.790G>A	c.(790-792)GAC>AAC	p.D264N	CD1E_uc010pid.1_Missense_Mutation_p.D262N|CD1E_uc010pie.1_Missense_Mutation_p.D165N|CD1E_uc010pif.1_Missense_Mutation_p.D75N|CD1E_uc001fsd.2_Missense_Mutation_p.D264N|CD1E_uc001fsk.2_Missense_Mutation_p.D174N|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Missense_Mutation_p.D75N|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.D264N|CD1E_uc001fry.2_Intron|CD1E_uc001fsg.2_Missense_Mutation_p.D75N|CD1E_uc001fsh.2_Missense_Mutation_p.D75N|CD1E_uc001fsi.2_Missense_Mutation_p.D264N|CD1E_uc009wsv.2_Missense_Mutation_p.D165N|CD1E_uc001frz.2_Missense_Mutation_p.D174N|CD1E_uc009wsw.2_Missense_Mutation_p.D22N	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	264	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GCCTAATGCTGACGAGACATG	0.617													27	56					0	0	0.005443	0	0
OR10T2	128360	broad.mit.edu	37	1	158368446	158368447	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158368446_158368447CC>AT	uc010pih.1	-	1	810_811	c.810_811GG>AT	c.(808-813)AAGGAT>AAATAT	p.D271Y		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					ACCAACTGATCCTTGTCTGAGG	0.475													7	29					0	0	0.004672	0	0
OR10T2	128360	broad.mit.edu	37	1	158368629	158368629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158368629C>T	uc010pih.1	-	1	628	c.628G>A	c.(628-630)GTG>ATG	p.V210M		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AGAAAAGGCACCATAATTACC	0.463													10	20					0	0	0.006214	0	0
OR10K1	391109	broad.mit.edu	37	1	158435491	158435491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158435491C>T	uc010pij.1	+	1	140	c.140C>T	c.(139-141)TCC>TTC	p.S47F		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	47	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					ATCATCATTTCCACCATTGTG	0.498													19	68					0	0	0.002299	0	0
SPTA1	6708	broad.mit.edu	37	1	158622263	158622263	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158622263G>A	uc001fst.1	-	23	3568	c.3369C>T	c.(3367-3369)TTC>TTT	p.F1123F		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1123	Spectrin 11.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCACCTTTTGGAACTCATCAA	0.393													12	29					0	0	0.001368	0	0
OR6K6	128371	broad.mit.edu	37	1	158724705	158724705	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:158724705C>T	uc001fsw.1	+	1	100	c.100C>T	c.(100-102)CAG>TAG	p.Q34*		NM_001005184	NP_001005184	Q8NGW6	OR6K6_HUMAN	olfactory receptor, family 6, subfamily K,	34	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_hematologic(112;0.0378)					CAGTGGGAATCAGACAATGGT	0.433													13	53					0	0	0.001855	0	0
CASQ1	844	broad.mit.edu	37	1	160165306	160165306	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:160165306C>T	uc010pja.1	+	5	890	c.633C>T	c.(631-633)TTC>TTT	p.F211F		NM_001231	NP_001222	P31415	CASQ1_HUMAN	calsequestrin 1	211						mitochondrial matrix|sarcoplasmic reticulum lumen|smooth endoplasmic reticulum	calcium ion binding			central_nervous_system(1)	1	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCCCCTTCTTCGCCACCTTCG	0.547													15	39					0	0	0.004007	0	0
SLAMF6	114836	broad.mit.edu	37	1	160456516	160456516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:160456516G>A	uc001fwe.1	-	8	1040	c.980C>T	c.(979-981)GCC>GTC	p.A327V	SLAMF6_uc001fwd.1_Missense_Mutation_p.A326V|SLAMF6_uc010pjh.1_Missense_Mutation_p.A277V|SLAMF6_uc010pji.1_Missense_Mutation_p.A216V	NM_052931	NP_443163	Q96DU3	SLAF6_HUMAN	activating NK receptor precursor	327	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	all_cancers(52;1.05e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0923)			ATTGTCAAGGGCAGTTGCCCT	0.473													10	20					0	0	0.006214	0	0
MPZ	4359	broad.mit.edu	37	1	161277067	161277067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:161277067C>T	uc001gaf.3	-	2	282	c.245G>A	c.(244-246)GGG>GAG	p.G82E	MPZ_uc010pko.1_RNA	NM_000530	NP_000521	P25189	MYP0_HUMAN	myelin protein zero	72	Ig-like V-type.|Extracellular (Potential).				synaptic transmission	integral to plasma membrane	structural molecule activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4	all_cancers(52;6.96e-17)|all_hematologic(112;0.093)	Breast(1374;0.181)	BRCA - Breast invasive adenocarcinoma(70;0.00376)			ATCTCTGCCCCCTTCGGGCTG	0.552													5	22					0	0	0.001168	0	0
HSPA7	3311	broad.mit.edu	37	1	161576433	161576433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:161576433C>T	uc010pkp.1	+	1	585	c.353C>T	c.(352-354)CCC>CTC	p.P118L		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						ACGTTCTACCCCGAGGAGATC	0.632													12	34					0	0	0.001855	0	0
NOS1AP	9722	broad.mit.edu	37	1	162337098	162337098	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:162337098C>T	uc001gbv.2	+	10	1749	c.1362C>T	c.(1360-1362)CTC>CTT	p.L454L	NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Silent_p.L449L|NOS1AP_uc009wut.1_Silent_p.L159L	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	454					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			GTCTGGAGCTCATCAAGTTCC	0.677													16	21					0	0	0.003163	0	0
NUF2	83540	broad.mit.edu	37	1	163310153	163310153	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:163310153G>A	uc001gcq.1	+	9	907	c.607_splice	c.e9-1	p.I203_splice	NUF2_uc001gcp.2_Splice_Site_p.I203_splice|NUF2_uc001gcr.1_Splice_Site_p.I203_splice|NUF2_uc009wvc.1_Splice_Site_p.I203_splice	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component						cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					TTTTCCCTTAGATAGTGCTGC	0.328													29	39					0	0	0.001512	0	0
LMX1A	4009	broad.mit.edu	37	1	165183025	165183025	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:165183025G>A	uc001gcy.1	-	4	743	c.522C>T	c.(520-522)CTC>CTT	p.L174L	LMX1A_uc001gcz.1_Silent_p.L174L|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	174						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CTGACTTGCAGAGACTTTCTT	0.488													22	70					0	0	0.003954	0	0
DCAF6	55827	broad.mit.edu	37	1	168032874	168032874	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:168032874C>T	uc001gew.2	+	15	2285	c.2043C>T	c.(2041-2043)GCC>GCT	p.A681A	DCAF6_uc001gev.2_Silent_p.A701A|DCAF6_uc001gex.2_Silent_p.A772A|DCAF6_uc010plk.1_Silent_p.A741A|DCAF6_uc001gey.2_Silent_p.A554A|DCAF6_uc001gez.2_5'UTR	NM_001017977	NP_001017977	Q58WW2	DCAF6_HUMAN	IQ motif and WD repeats 1 isoform b	681	IQ.				positive regulation of transcription from RNA polymerase II promoter	CUL4 RING ubiquitin ligase complex|nucleus	ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CTGCTGTTGCCCGTATTCAGG	0.294													5	6					0	0	0.000602	0	0
FMO3	2328	broad.mit.edu	37	1	171080110	171080110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:171080110G>A	uc001ghi.2	+	6	910	c.799G>A	c.(799-801)GAA>AAA	p.E267K	FMO3_uc001ghh.2_Missense_Mutation_p.E267K|FMO3_uc010pmb.1_Missense_Mutation_p.E247K|FMO3_uc010pmc.1_Missense_Mutation_p.E204K	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	267					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ATTCAAGCATGAAAACTATGG	0.438													26	16					0	0	0.006320	0	0
FMO1	2326	broad.mit.edu	37	1	171247933	171247933	+	Missense_Mutation	SNP	G	A	A	rs138773316		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:171247933G>A	uc009wvz.2	+	5	686	c.550G>A	c.(550-552)GAC>AAC	p.D184N	FMO1_uc010pme.1_Missense_Mutation_p.D121N|FMO1_uc001ghl.2_Missense_Mutation_p.D184N|FMO1_uc001ghm.2_Missense_Mutation_p.D184N|FMO1_uc001ghn.2_Missense_Mutation_p.D184N	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	184					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TATATTTAAGGACAAGAGAGT	0.418													17	15					0	0	0.006122	0	0
FMO4	2329	broad.mit.edu	37	1	171292228	171292228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:171292228C>T	uc001gho.2	+	4	435	c.218C>T	c.(217-219)CCT>CTT	p.P73L		NM_002022	NP_002013	P31512	FMO4_HUMAN	flavin containing monooxygenase 4	73					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			kidney(2)|skin(1)	3	all_cancers(6;3.9e-08)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					AGTGACTTCCCTTTCCACGAA	0.388													19	13					0	0	0.001523	0	0
SLC9A11	284525	broad.mit.edu	37	1	173552726	173552726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:173552726C>T	uc001giz.2	-	6	982	c.559G>A	c.(559-561)GAA>AAA	p.E187K	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	187	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ATCAATGATTCTCCTCTAATG	0.303													29	28					0	0	0.002096	0	0
SLC9A11	284525	broad.mit.edu	37	1	173567128	173567128	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:173567128G>A	uc001giz.2	-	4	695	c.272C>T	c.(271-273)TCA>TTA	p.S91L	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	91	Helical; (Potential).				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AGAATAAAGTGAAAAACTTGA	0.303													26	26					0	0	0.003954	0	0
TNN	63923	broad.mit.edu	37	1	175049339	175049339	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:175049339G>A	uc001gkl.1	+	4	938	c.825G>A	c.(823-825)GAG>GAA	p.E275E	TNN_uc010pmx.1_Silent_p.E275E	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	275	Fibronectin type-III 1.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		AGAACACGGAGGATTCTCTGC	0.612													21	38					0	0	0.002299	0	0
TNN	63923	broad.mit.edu	37	1	175097242	175097242	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:175097242C>T	uc001gkl.1	+	14	3233	c.3120C>T	c.(3118-3120)TCC>TCT	p.S1040S		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1040	Fibronectin type-III 9.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		ACCCTGTCTCCCTTGTTGCCT	0.532													27	21					0	0	0.007291	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668361	176668361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:176668361C>T	uc001gkz.2	+	8	4036	c.2872C>T	c.(2872-2874)CAA>TAA	p.Q958*	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	958					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GCTGCTCTTCCAACACCCGGT	0.572													25	56					0	0	0.003330	0	0
SEC16B	89866	broad.mit.edu	37	1	177911152	177911152	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:177911152G>A	uc001gli.1	-	16	1995	c.1905C>T	c.(1903-1905)TCC>TCT	p.S635S	SEC16B_uc001glk.1_Silent_p.S312S|SEC16B_uc009wwy.1_Silent_p.S190S|SEC16B_uc001glh.1_Silent_p.S294S|SEC16B_uc009wwz.1_Silent_p.S294S|SEC16B_uc001glj.1_Silent_p.S636S	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	635					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						CTGCCAGACGGGAAGCATAAA	0.493													10	22					0	0	0.006214	0	0
C1orf125	126859	broad.mit.edu	37	1	179414189	179414189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:179414189G>A	uc001gmo.2	+	16	1775	c.1648G>A	c.(1648-1650)GAA>AAA	p.E550K	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmn.1_Missense_Mutation_p.E338K|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E550K	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	550											0						ACATTTACAGGAAAACTGGGC	0.378													26	31					0	0	0.007291	0	0
TDRD5	163589	broad.mit.edu	37	1	179632483	179632483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:179632483G>A	uc001gnf.1	+	15	2594	c.2344G>A	c.(2344-2346)GAC>AAC	p.D782N	TDRD5_uc010pnp.1_Missense_Mutation_p.D836N|TDRD5_uc001gnh.1_Missense_Mutation_p.D337N	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	782					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						TTCATTATAGGACTGGTGTTT	0.383													9	29					0	0	0.006214	0	0
CEP350	9857	broad.mit.edu	37	1	180031373	180031373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:180031373C>T	uc001gnt.2	+	26	5664	c.5281C>T	c.(5281-5283)CAA>TAA	p.Q1761*	CEP350_uc009wxl.2_Nonsense_Mutation_p.Q1760*	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	1761	Potential.					centrosome|nucleus|spindle				ovary(4)	4						AAAACGTCTTCAAGAAGCCAA	0.383													7	10					0	0	0.001984	0	0
CACNA1E	777	broad.mit.edu	37	1	181754549	181754549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:181754549G>A	uc001gow.2	+	42	5839	c.5674G>A	c.(5674-5676)GAA>AAA	p.E1892K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1780K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E1118K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1892	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GCAGCTGGAGGAACAGGTGAA	0.537													3	4					0	0	0.004672	0	0
CACNA1E	777	broad.mit.edu	37	1	181759621	181759622	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:181759621_181759622CC>TT	uc001gow.2	+	44	5992_5993	c.5827_5828CC>TT	c.(5827-5829)CCC>TTC	p.P1943F	CACNA1E_uc009wxs.2_Missense_Mutation_p.P1831F|CACNA1E_uc009wxt.2_Missense_Mutation_p.P1169F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1943	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TCCACTCTCTCCCCAGGATATA	0.5													6	25					0	0	0.004672	0	0
CACNA1E	777	broad.mit.edu	37	1	181767745	181767745	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:181767745C>T	uc001gow.2	+	47	6753	c.6588C>T	c.(6586-6588)TCC>TCT	p.S2196S	CACNA1E_uc009wxs.2_Silent_p.S2084S|CACNA1E_uc009wxt.2_Silent_p.S1465S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2239	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ACGAAGACTCCCACGCCTCAG	0.637													5	13					0	0	0.000602	0	0
ZNF648	127665	broad.mit.edu	37	1	182025680	182025680	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:182025680G>A	uc001goz.2	-	2	1674	c.1466C>T	c.(1465-1467)TCG>TTG	p.S489L		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	489	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTTCAGGGTCGAAGAGCGGGC	0.667													11	13					0	0	0.000978	0	0
PRG4	10216	broad.mit.edu	37	1	186273345	186273345	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:186273345A>G	uc001gru.3	+	5	476	c.425A>G	c.(424-426)AAG>AGG	p.K142R	PRG4_uc001grt.3_Missense_Mutation_p.K101R|PRG4_uc009wyl.2_Intron|PRG4_uc009wym.2_Intron|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	142					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						CCACCAAACAAGAAGAAGACT	0.393													20	20					0	0	0.001882	0	0
TPR	7175	broad.mit.edu	37	1	186287896	186287896	+	Silent	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:186287896A>C	uc001grv.2	-	47	6930	c.6633T>G	c.(6631-6633)GTT>GTG	p.V2211V		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	2211					carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		GAGTAGTGGGAACACTTCGGC	0.408			T	NTRK1	papillary thyroid								58	37					0	0	0.003610	0	0
PTGS2	5743	broad.mit.edu	37	1	186648224	186648224	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:186648224G>A	uc001gsb.2	-	3	416	c.279C>T	c.(277-279)TTC>TTT	p.F93F	PTGS2_uc009wyo.2_5'UTR	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	93					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	CATTTCGAAGGAAGGGAATGT	0.338													8	34					0	0	0.003080	0	0
KCNT2	343450	broad.mit.edu	37	1	196398861	196398861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:196398861C>T	uc001gtd.1	-	9	725	c.665G>A	c.(664-666)CGA>CAA	p.R222Q	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.R222Q|KCNT2_uc001gtf.1_Missense_Mutation_p.R222Q|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Missense_Mutation_p.R222Q|KCNT2_uc009wyv.1_Missense_Mutation_p.R197Q	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	222	Extracellular (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CTTTCCTATTCGTTCCAGATG	0.378													5	4					0	0	0.001168	0	0
CFHR2	3080	broad.mit.edu	37	1	196920049	196920049	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:196920049T>C	uc001gtq.1	+	3	398	c.321T>C	c.(319-321)GGT>GGC	p.G107G	CFHR2_uc001gtr.1_Intron	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	107	Sushi 2.					extracellular region				skin(2)|ovary(1)	3						ATCTGGAAGGTGATACTGTAC	0.388													20	24					0	0	0.001523	0	0
CFHR5	81494	broad.mit.edu	37	1	196973938	196973938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:196973938G>A	uc001gts.3	+	9	1606	c.1478G>A	c.(1477-1479)AGA>AAA	p.R493K		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	493	Sushi 8.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GTAACATGCAGAAATAAACAG	0.393													20	13					0	0	0.001216	0	0
CRB1	23418	broad.mit.edu	37	1	197396826	197396826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:197396826G>A	uc001gtz.2	+	7	2506	c.2371G>A	c.(2371-2373)GGA>AGA	p.G791R	CRB1_uc010poz.1_Missense_Mutation_p.G722R|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G679R|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.G272R|CRB1_uc001gub.1_Missense_Mutation_p.G440R	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	791	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCTTAATGATGGAAATGTCCA	0.368													5	12					0	0	0.000602	0	0
KIF21B	23046	broad.mit.edu	37	1	200969077	200969077	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:200969077G>A	uc001gvs.1	-	12	2018	c.1701C>T	c.(1699-1701)GCC>GCT	p.A567A	KIF21B_uc001gvr.1_Silent_p.A567A|KIF21B_uc009wzl.1_Silent_p.A567A|KIF21B_uc010ppn.1_Silent_p.A567A	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	567	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TCTTTTTGAAGGCTTCCTTCT	0.622													43	40					0	0	0.007835	0	0
CACNA1S	779	broad.mit.edu	37	1	201043645	201043645	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:201043645C>T	uc001gvv.2	-	14	2279	c.2052G>A	c.(2050-2052)AGG>AGA	p.R684R		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	684	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGGACATCTTCCTGCGTTTTT	0.582													7	9					0	0	0.004482	0	0
LAD1	3898	broad.mit.edu	37	1	201355553	201355553	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:201355553G>A	uc001gwm.2	-	3	1171	c.936C>T	c.(934-936)GCC>GCT	p.A312A	LAD1_uc009wzu.1_Silent_p.A334A	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	312						basement membrane	structural molecule activity				0						TCCCAGGGAGGGCCCTTCCTC	0.682													16	32					0	0	0.004007	0	0
ATP2B4	493	broad.mit.edu	37	1	203690437	203690437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:203690437C>T	uc001gzw.2	+	17	3595	c.2711C>T	c.(2710-2712)CCC>CTC	p.P904L	ATP2B4_uc001gzv.2_Missense_Mutation_p.P904L|ATP2B4_uc009xaq.2_Missense_Mutation_p.P904L|ATP2B4_uc001gzx.2_5'Flank|ATP2B4_uc009xar.2_5'Flank	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	904	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			AAGCGGCGCCCCTATGGCCGA	0.488													13	42					0	0	0.001368	0	0
RBBP5	5929	broad.mit.edu	37	1	205065952	205065953	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:205065952_205065953GG>AA	uc001hbu.1	-	12	1383_1384	c.1253_1254CC>TT	c.(1252-1254)CCC>CTT	p.P418L	RBBP5_uc010prd.1_Missense_Mutation_p.P453L|RBBP5_uc001hbv.1_Missense_Mutation_p.P418L|RBBP5_uc010pre.1_Missense_Mutation_p.P285L	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	418					histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			CATCCGGTGGGGGGCCGTAAGG	0.505													71	49					0	0	0.004672	0	0
NUAK2	81788	broad.mit.edu	37	1	205272647	205272647	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:205272647G>A	uc001hce.2	-	7	1945	c.1818C>T	c.(1816-1818)TCC>TCT	p.S606S		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	606					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			AGTCTGTCAGGGAAAAGCAGC	0.642													21	24					0	0	0.001523	0	0
IL20	50604	broad.mit.edu	37	1	207039325	207039325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:207039325G>A	uc001her.2	+	1	172	c.128G>A	c.(127-129)CGA>CAA	p.R43Q	IL20_uc010pry.1_Missense_Mutation_p.R114Q|IL20_uc009xby.2_Missense_Mutation_p.R43Q	NM_018724	NP_061194	Q9NYY1	IL20_HUMAN	interleukin 20 precursor	43					positive regulation of keratinocyte differentiation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of inflammatory response	extracellular space	cytokine activity|interleukin-20 receptor binding				0	Breast(84;0.201)			OV - Ovarian serous cystadenocarcinoma(81;0.00459)		CAGGAAATACGAAATGGATTT	0.473													25	35					0	0	0.003330	0	0
CR1	1378	broad.mit.edu	37	1	207796381	207796381	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:207796381C>T	uc001hfy.2	+	37	6110	c.5970C>T	c.(5968-5970)TTC>TTT	p.F1990F	CR1_uc001hfx.2_Silent_p.F2440F	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1990	Helical; (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TCATCATTTTCCTCTCTTGGA	0.333													7	2					0	0	0.000673	0	0
CAMK1G	57172	broad.mit.edu	37	1	209768407	209768407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:209768407G>A	uc001hhd.2	+	2	181	c.79G>A	c.(79-81)GAA>AAA	p.E27K	CAMK1G_uc001hhf.3_Missense_Mutation_p.E27K|CAMK1G_uc001hhe.2_Missense_Mutation_p.E27K	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	27	Protein kinase.					Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		CATTTTTATGGAAGTGCTGGG	0.517													21	24					0	0	0.003330	0	0
CAMK1G	57172	broad.mit.edu	37	1	209786148	209786148	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:209786148C>T	uc001hhd.2	+	12	1461	c.1359C>T	c.(1357-1359)GTC>GTT	p.V453V	CAMK1G_uc001hhe.2_Silent_p.V453V	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG	453						Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		AGTCGGAGGTCATGGTACCAG	0.517													26	65					0	0	0.006320	0	0
ESRRG	2104	broad.mit.edu	37	1	216850620	216850620	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:216850620G>A	uc001hkw.1	-	2	436	c.270C>T	c.(268-270)ATC>ATT	p.I90I	ESRRG_uc001hky.1_Silent_p.I67I|ESRRG_uc009xdp.1_Silent_p.I67I|ESRRG_uc001hkz.1_Silent_p.I67I|ESRRG_uc010puc.1_Silent_p.I67I|ESRRG_uc001hla.1_Silent_p.I67I|ESRRG_uc001hlb.1_Silent_p.I67I|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Silent_p.I67I|ESRRG_uc001hld.1_Silent_p.I67I|ESRRG_uc001hkx.1_Silent_p.I95I|ESRRG_uc009xdo.1_Silent_p.I67I|ESRRG_uc001hle.1_Silent_p.I67I	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	90					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	TACCTCCCAGGATAGGAGCAG	0.537													39	25					0	0	0.005524	0	0
IARS2	55699	broad.mit.edu	37	1	220284190	220284191	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:220284190_220284191CC>TT	uc001hmc.2	+	11	1494_1495	c.1390_1391CC>TT	c.(1390-1392)CCG>TTG	p.P464L		NM_018060	NP_060530	Q9NSE4	SYIM_HUMAN	mitochondrial isoleucine tRNA synthetase	464					isoleucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|isoleucine-tRNA ligase activity			ovary(2)|skin(2)	4				GBM - Glioblastoma multiforme(131;0.0554)	L-Isoleucine(DB00167)	GCATAGCTATCCGTATGACTGG	0.356													13	27					0	0	0.004672	0	0
MARK1	4139	broad.mit.edu	37	1	220771689	220771689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:220771689G>A	uc001hmn.3	+	4	923	c.326G>A	c.(325-327)CGA>CAA	p.R109Q	MARK1_uc009xdw.2_Missense_Mutation_p.R109Q|MARK1_uc010pun.1_Missense_Mutation_p.R109Q|MARK1_uc001hmm.3_Missense_Mutation_p.R109Q	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	109	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		CGAGAAGTACGAATAATGAAG	0.229													13	35					0	0	0.003163	0	0
TP53BP2	7159	broad.mit.edu	37	1	223991102	223991102	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:223991102G>A	uc010pvb.1	-	7	994	c.702C>T	c.(700-702)CTC>CTT	p.L234L	TP53BP2_uc001hod.2_Silent_p.L105L|TP53BP2_uc010puz.1_5'Flank|TP53BP2_uc010pva.1_5'Flank	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	228					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		CAGCCAGGACGAGCTCCCTCT	0.448													14	29					0	0	0.002450	0	0
ITPKB	3707	broad.mit.edu	37	1	226924447	226924447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:226924447G>A	uc010pvo.1	-	2	1053	c.713C>T	c.(712-714)CCC>CTC	p.P238L	ITPKB_uc001hqh.2_Missense_Mutation_p.P238L	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	238							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				AGCCCGGCCGGGAAGAGGTGG	0.612													36	115					0	0	0.001951	0	0
OBSCN	84033	broad.mit.edu	37	1	228433237	228433237	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:228433237A>G	uc009xez.1	+	12	3649	c.3605A>G	c.(3604-3606)GAC>GGC	p.D1202G	OBSCN_uc001hsn.2_Missense_Mutation_p.D1202G	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1202	Ig-like 12.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TGGTACAAGGACGGGAAGAAG	0.602													13	30					0	0	0.001368	0	0
OBSCN	84033	broad.mit.edu	37	1	228474643	228474643	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:228474643G>A	uc009xez.1	+	35	9491	c.9447G>A	c.(9445-9447)CGG>CGA	p.R3149R	OBSCN_uc001hsn.2_Silent_p.R3149R|OBSCN_uc001hsq.1_Silent_p.R405R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3149	Ig-like 31.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGGCCACCGGGCCCAGCTGC	0.657													13	7					0	0	0.002450	0	0
OBSCN	84033	broad.mit.edu	37	1	228509638	228509638	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:228509638C>T	uc009xez.1	+	55	15140	c.15096C>T	c.(15094-15096)TTC>TTT	p.F5032F	OBSCN_uc001hsn.2_Silent_p.F5032F	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5032					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGAGCTCTTCCTGAGTGCAG	0.622													7	13					0	0	0.001984	0	0
PCNXL2	80003	broad.mit.edu	37	1	233120181	233120181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:233120181C>T	uc001hvl.2	-	34	6518	c.6283G>A	c.(6283-6285)GGG>AGG	p.G2095R	PCNXL2_uc001hvk.1_3'UTR|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	2095						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TGAAGCTGCCCCTGCTCGGTG	0.592													24	57					0	0	0.006320	0	0
PCNXL2	80003	broad.mit.edu	37	1	233313582	233313582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:233313582G>A	uc001hvl.2	-	17	3474	c.3239C>T	c.(3238-3240)GCT>GTT	p.A1080V	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_RNA|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1080						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GAGAGGGTCAGCAGCTGACTC	0.433													21	15					0	0	0.003954	0	0
PCNXL2	80003	broad.mit.edu	37	1	233393932	233393932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:233393932G>A	uc001hvl.2	-	5	1911	c.1676C>T	c.(1675-1677)TCC>TTC	p.S559F	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	559						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GTCAGATTTGGAAGTTGGCAT	0.438													18	17					0	0	0.004990	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394212	233394212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:233394212G>A	uc001hvl.2	-	5	1631	c.1396C>T	c.(1396-1398)CAG>TAG	p.Q466*	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	466						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CCAGAACACTGATTGGTGGAT	0.572													16	23					0	0	0.004007	0	0
EDARADD	128178	broad.mit.edu	37	1	236631543	236631543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:236631543G>A	uc001hxu.1	+	5	297	c.232G>A	c.(232-234)GGC>AGC	p.G78S	EDARADD_uc001hxv.1_Missense_Mutation_p.G68S	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A	78					cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AGAAGAAAATGGCTTTCCAGA	0.343													24	97					0	0	0.007291	0	0
CHRM3	1131	broad.mit.edu	37	1	240071162	240071162	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:240071162G>A	uc001hyp.2	+	5	1190	c.411G>A	c.(409-411)GGG>GGA	p.G137G		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	137	Extracellular (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	GGGCCTTAGGGAACTTGGCCT	0.463													23	40					0	0	0.002780	0	0
FMN2	56776	broad.mit.edu	37	1	240256706	240256706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:240256706C>T	uc010pyd.1	+	1	1522	c.1297C>T	c.(1297-1299)CCG>TCG	p.P433S	FMN2_uc010pye.1_Missense_Mutation_p.P433S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	433					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CAATCACTCCCCGTCTCAGTC	0.672													30	28					0	0	0.004289	0	0
FMN2	56776	broad.mit.edu	37	1	240370099	240370099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:240370099G>A	uc010pyd.1	+	5	2212	c.1987G>A	c.(1987-1989)GAA>AAA	p.E663K	FMN2_uc010pye.1_Missense_Mutation_p.E667K	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	663					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CGCCCTTCAGGAAGTTGTTGA	0.393													11	23					0	0	0.000978	0	0
EXO1	9156	broad.mit.edu	37	1	242023951	242023951	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:242023951C>T	uc001hzh.2	+	9	1429	c.889C>T	c.(889-891)CCT>TCT	p.P297S	EXO1_uc001hzi.2_Missense_Mutation_p.P297S|EXO1_uc001hzj.2_Missense_Mutation_p.P297S|EXO1_uc009xgq.2_Missense_Mutation_p.P297S	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	297	Interaction with MSH3.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			GAAACTTATTCCTCTGAACGC	0.408								Direct_reversal_of_damage|Editing_and_processing_nucleases					29	35					0	0	0.002445	0	0
KIF26B	55083	broad.mit.edu	37	1	245582915	245582915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:245582915G>A	uc001ibf.1	+	4	1474	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	KIF26B_uc010pyq.1_Missense_Mutation_p.G345E	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	345					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AGCCGGGAGGGACTAACAGAA	0.562													9	17					0	0	0.004482	0	0
NLRP3	114548	broad.mit.edu	37	1	247588527	247588527	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:247588527G>A	uc001icr.2	+	5	1920	c.1782G>A	c.(1780-1782)AAG>AAA	p.K594K	NLRP3_uc001ics.2_Silent_p.K594K|NLRP3_uc001icu.2_Silent_p.K594K|NLRP3_uc001icw.2_Silent_p.K594K|NLRP3_uc001icv.2_Silent_p.K594K|NLRP3_uc010pyw.1_Silent_p.K592K|NLRP3_uc001ict.1_Silent_p.K592K	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	594					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			ACTTGGAGAAGAAATTAAGTT	0.443													10	36					0	0	0.000673	0	0
C1orf150	148823	broad.mit.edu	37	1	247737515	247737515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:247737515C>T	uc001idf.2	+	5	284	c.239C>T	c.(238-240)TCC>TTC	p.S80F	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	80											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			CATCAGAGATCCTCCCTGAGC	0.443													14	40					0	0	0.001855	0	0
OR6F1	343169	broad.mit.edu	37	1	247875253	247875253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:247875253C>T	uc001idj.1	-	1	805	c.805G>A	c.(805-807)GAT>AAT	p.D269N		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TTGATCAGATCCAAGGCATCT	0.488													24	24					0	0	0.004656	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285833	248285833	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:248285833C>T	uc001idy.1	+	1	396	c.396C>T	c.(394-396)TTC>TTT	p.F132F		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						AGGTTATTTTCATTTGCTCTA	0.423													53	41					0	0	0.003610	0	0
OR14C36	127066	broad.mit.edu	37	1	248512570	248512570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:248512570C>T	uc010pzl.1	+	1	494	c.494C>T	c.(493-495)CCC>CTC	p.P165L		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TTCCAGCTGCCCTTCTGTCGG	0.502													22	24					0	0	0.002299	0	0
OR2T2	401992	broad.mit.edu	37	1	248616128	248616128	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:248616128C>T	uc001iek.1	+	1	30	c.30C>T	c.(28-30)TCC>TCT	p.S10S		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCCAGAACTCCACTAACTTCG	0.502													8	74					0	0	0.000673	0	0
ADARB2	105	broad.mit.edu	37	10	1230823	1230823	+	Missense_Mutation	SNP	C	T	T	rs143420247		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:1230823C>T	uc009xhq.2	-	9	2395	c.2021G>A	c.(2020-2022)CGG>CAG	p.R674Q	ADARB2_uc009xhp.2_Missense_Mutation_p.R58Q|ADARB2_uc001igl.3_Missense_Mutation_p.R36Q|ADARB2_uc001igm.3_Missense_Mutation_p.R183Q	NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	674	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		CCGCGCCCACCGTGCAGACAG	0.662													5	15					0	0	0.003080	0	0
ITIH2	3698	broad.mit.edu	37	10	7762927	7762927	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:7762927G>A	uc001ijs.2	+	7	900	c.738_splice	c.e7+1	p.K246_splice		NM_002216	NP_002207	P19823	ITIH2_HUMAN	inter-alpha globulin inhibitor H2 polypeptide						hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)|pancreas(1)|skin(1)	3						ACAACAGAAGGTACCCTGAGC	0.502													11	44					0	0	0.001368	0	0
ITGA8	8516	broad.mit.edu	37	10	15614275	15614275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:15614275G>A	uc001ioc.1	-	25	2572	c.2572C>T	c.(2572-2574)CAT>TAT	p.H858Y	ITGA8_uc010qcb.1_Missense_Mutation_p.H843Y	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	858	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GTTTGAATATGGAAAATATAG	0.443													10	41					0	0	0.000673	0	0
SLC39A12	221074	broad.mit.edu	37	10	18242443	18242443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:18242443G>A	uc001ipo.2	+	2	511	c.238G>A	c.(238-240)GGA>AGA	p.G80R	SLC39A12_uc001ipn.2_Missense_Mutation_p.G80R|SLC39A12_uc001ipp.2_Missense_Mutation_p.G80R|SLC39A12_uc010qck.1_Intron	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	80	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						GAGGAGAAACGGAATGCAAGG	0.468													9	10					0	0	0.006214	0	0
SLC39A12	221074	broad.mit.edu	37	10	18280227	18280227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:18280227G>A	uc001ipo.2	+	8	1690	c.1417G>A	c.(1417-1419)GAC>AAC	p.D473N	SLC39A12_uc001ipn.2_Missense_Mutation_p.D473N|SLC39A12_uc001ipp.2_Missense_Mutation_p.D473N|SLC39A12_uc010qck.1_Missense_Mutation_p.D339N	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	473	Extracellular (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						ATCACCAAATGACAAGGTATA	0.303													11	24					0	0	0.000673	0	0
NSUN6	221078	broad.mit.edu	37	10	18840768	18840768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:18840768C>T	uc010qcp.1	-	9	1473	c.1055G>A	c.(1054-1056)CGA>CAA	p.R352Q		NM_182543	NP_872349	Q8TEA1	NSUN6_HUMAN	NOL1/NOP2/Sun domain family, member 6	352							methyltransferase activity|RNA binding			ovary(2)	2						GAAGAGTTTTCGCTGTAATGG	0.383													6	26					0	0	0.001984	0	0
NEBL	10529	broad.mit.edu	37	10	21112212	21112212	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:21112212C>T	uc001iqi.2	-	19	2284	c.1887G>A	c.(1885-1887)GAG>GAA	p.E629E	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	629	Nebulin 17.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CATGTTTAATCTCTTCTTTGT	0.289													8	6					0	0	0.006214	0	0
NEBL	10529	broad.mit.edu	37	10	21250667	21250667	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:21250667G>A	uc001iqk.2	-	4	645	c.291C>T	c.(289-291)GGC>GGT	p.G97G		NM_213569	NP_998734	O76041	NEBL_HUMAN	nebulette non-muscle isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CGATGCTGAAGCCCCTCCCTT	0.463													16	36					0	0	0.001882	0	0
KIAA1217	56243	broad.mit.edu	37	10	24834922	24834922	+	Missense_Mutation	SNP	C	T	T	rs141030064		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:24834922C>T	uc001iru.3	+	21	5904	c.5501C>T	c.(5500-5502)TCG>TTG	p.S1834L	KIAA1217_uc001irs.2_Missense_Mutation_p.S1155L|KIAA1217_uc001irt.3_Missense_Mutation_p.S1200L|KIAA1217_uc010qcy.1_Missense_Mutation_p.S1265L|KIAA1217_uc010qcz.1_Missense_Mutation_p.S1240L|KIAA1217_uc001irw.2_3'UTR|KIAA1217_uc001irz.2_3'UTR|KIAA1217_uc001irx.2_3'UTR|KIAA1217_uc001iry.2_3'UTR	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1834	Ser-rich.				embryonic skeletal system development	cytoplasm		p.S1834L(1)		ovary(5)|skin(2)	7						ACTAAACCATCGATTGCTTCT	0.517													39	32					0	0	0.006999	0	0
MYO3A	53904	broad.mit.edu	37	10	26459367	26459367	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:26459367G>A	uc001isn.2	+	29	3657	c.3297G>A	c.(3295-3297)AGG>AGA	p.R1099R	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1099	IQ 2.			R -> G (in Ref. 1 and 2).	protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						ACCTTGTCAGGAAACAAAGAA	0.328													6	13					0	0	0.001168	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687779	27687779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:27687779G>A	uc001itu.2	-	4	1866	c.1748C>T	c.(1747-1749)CCA>CTA	p.P583L		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	583					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CAAACTTATTGGATGGATATC	0.378													12	9					0	0	0.000978	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702954	27702954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:27702954G>A	uc001itu.2	-	1	344	c.226C>T	c.(226-228)CCC>TCC	p.P76S		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	76					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GACGGCCGGGGGGGTGCATCG	0.721													11	27					0	0	0.000978	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702966	27702966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:27702966C>T	uc001itu.2	-	1	332	c.214G>A	c.(214-216)GAC>AAC	p.D72N		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	72					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GGTGCATCGTCCCCCTCTGGC	0.716													28	15					0	0	0.006320	0	0
ARMC4	55130	broad.mit.edu	37	10	28151542	28151542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:28151542C>T	uc009xky.2	-	18	2718	c.2620G>A	c.(2620-2622)GAA>AAA	p.E874K	ARMC4_uc010qds.1_Missense_Mutation_p.E399K|ARMC4_uc010qdt.1_Missense_Mutation_p.E566K|ARMC4_uc001itz.2_Missense_Mutation_p.E874K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	874	ARM 7.						binding			ovary(4)|skin(2)	6						CGAACCATTTCCCCAGCATCC	0.363													8	8					0	0	0.003080	0	0
SVIL	6840	broad.mit.edu	37	10	29773716	29773716	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:29773716C>T	uc001iut.1	-	27	5577	c.4824G>A	c.(4822-4824)GGG>GGA	p.G1608G	LOC387647_uc001iup.2_RNA|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Silent_p.G522G|SVIL_uc001iuu.1_Silent_p.G1182G|SVIL_uc009xlc.2_Silent_p.G400G	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1608	Gelsolin-like 2.|Interaction with NEB.				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TGACTTCTTTCCCATGCCATA	0.398													8	10					0	0	0.000978	0	0
SVIL	6840	broad.mit.edu	37	10	29813478	29813478	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:29813478T>A	uc001iut.1	-	14	3262	c.2509A>T	c.(2509-2511)AAC>TAC	p.N837Y	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Missense_Mutation_p.N411Y	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	837					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TCTATTCTGTTCCGGGTAGAA	0.498													11	49					0	0	0.000673	0	0
SVIL	6840	broad.mit.edu	37	10	29813480	29813480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:29813480C>T	uc001iut.1	-	14	3260	c.2507G>A	c.(2506-2508)CGG>CAG	p.R836Q	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Missense_Mutation_p.R410Q	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	836					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TATTCTGTTCCGGGTAGAAAT	0.502													13	47					0	0	0.001368	0	0
KIAA1462	57608	broad.mit.edu	37	10	30316031	30316031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:30316031C>T	uc001iux.2	-	2	3105	c.3046G>A	c.(3046-3048)GAA>AAA	p.E1016K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.E878K|KIAA1462_uc009xle.1_Missense_Mutation_p.E1016K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	1016										ovary(4)	4						GGGACCGCTTCACTTGGTTTC	0.567													54	42					0	0	0.003610	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317681	30317681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:30317681C>T	uc001iux.2	-	2	1455	c.1396G>A	c.(1396-1398)GGA>AGA	p.G466R	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.G328R|KIAA1462_uc009xle.1_Missense_Mutation_p.G466R	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	466										ovary(4)	4						TGCATTCCTCCATGAGCCGGC	0.522													19	55					0	0	0.001882	0	0
ZEB1	6935	broad.mit.edu	37	10	31784752	31784752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:31784752G>A	uc001ivs.3	+	3	367	c.304G>A	c.(304-306)GAA>AAA	p.E102K	ZEB1_uc001ivr.3_5'UTR|ZEB1_uc010qee.1_5'UTR|ZEB1_uc010qef.1_5'UTR|ZEB1_uc009xlh.1_RNA|ZEB1_uc009xli.1_RNA|ZEB1_uc009xlj.1_Intron|ZEB1_uc010qeg.1_Intron|ZEB1_uc009xlk.1_5'UTR|ZEB1_uc001ivt.3_5'UTR|ZEB1_uc001ivu.3_Missense_Mutation_p.E103K|ZEB1_uc001ivv.3_Intron|ZEB1_uc010qeh.1_Missense_Mutation_p.E35K|ZEB1_uc009xll.2_RNA|ZEB1_uc009xlm.1_RNA|ZEB1_uc009xln.1_RNA|ZEB1_uc009xlo.1_Missense_Mutation_p.E85K|ZEB1_uc009xlp.2_Missense_Mutation_p.E86K	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	102					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				TCAGGCAGATGAAGCAGGATG	0.363													36	33					0	0	0.007835	0	0
ZEB1	6935	broad.mit.edu	37	10	31810494	31810494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:31810494G>A	uc001ivs.3	+	7	2294	c.2231G>A	c.(2230-2232)GGA>GAA	p.G744E	ZEB1_uc001ivr.3_Missense_Mutation_p.G526E|ZEB1_uc010qee.1_Missense_Mutation_p.G526E|ZEB1_uc010qef.1_Missense_Mutation_p.G526E|ZEB1_uc009xlj.1_Missense_Mutation_p.G670E|ZEB1_uc010qeg.1_Missense_Mutation_p.G603E|ZEB1_uc009xlk.1_Missense_Mutation_p.G526E|ZEB1_uc001ivt.3_Missense_Mutation_p.G526E|ZEB1_uc001ivu.3_Missense_Mutation_p.G745E|ZEB1_uc001ivv.3_Missense_Mutation_p.G724E|ZEB1_uc010qeh.1_Missense_Mutation_p.G677E|ZEB1_uc009xlo.1_Missense_Mutation_p.G727E|ZEB1_uc009xlp.2_Missense_Mutation_p.G728E	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	744					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				AAGCAACAGGGAGAATTATTA	0.428													16	15					0	0	0.004990	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32132466	32132466	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:32132466G>A	uc001ivz.1	-	7	1489	c.1219C>T	c.(1219-1221)CTG>TTG	p.L407L	ARHGAP12_uc001ivy.1_Silent_p.L358L|ARHGAP12_uc009xls.2_Silent_p.L358L|ARHGAP12_uc001iwb.1_Silent_p.L405L|ARHGAP12_uc001iwc.1_Silent_p.L405L|ARHGAP12_uc009xlq.1_Silent_p.L358L|ARHGAP12_uc001iwd.1_Silent_p.L405L|ARHGAP12_uc009xlr.1_Silent_p.L405L	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	407					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				CGCCTGTCCAGGCTCCTACTT	0.358													18	9					0	0	0.004990	0	0
EPC1	80314	broad.mit.edu	37	10	32576187	32576187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:32576187G>A	uc001iwg.1	-	7	1261	c.991C>T	c.(991-993)CTT>TTT	p.L331F	EPC1_uc001iwi.3_Missense_Mutation_p.L281F|EPC1_uc009xlt.2_Missense_Mutation_p.L281F|EPC1_uc001iwh.1_Missense_Mutation_p.L331F	NM_025209	NP_079485	Q9H2F5	EPC1_HUMAN	enhancer of polycomb 1	331					histone H2A acetylation|histone H4 acetylation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|regulation of growth|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear membrane|Piccolo NuA4 histone acetyltransferase complex				ovary(3)|central_nervous_system(1)	4		Prostate(175;0.0199)				GGTCGGATAAGATCGGCTTTA	0.418													14	19					0	0	0.002450	0	0
ITGB1	3688	broad.mit.edu	37	10	33190517	33190517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:33190517G>A	uc001iws.3	-	16	2514	c.2378C>T	c.(2377-2379)CCG>CTG	p.P793L	ITGB1_uc001iwp.3_3'UTR|ITGB1_uc001iwq.3_3'UTR|ITGB1_uc001iwr.3_3'UTR|ITGB1_uc001iwt.3_Missense_Mutation_p.P793L	NM_133376	NP_596867	P05556	ITB1_HUMAN	integrin beta 1 isoform 1A precursor	793	Cytoplasmic (Potential).				axon guidance|blood coagulation|cell-cell adhesion mediated by integrin|cell-matrix adhesion|cellular defense response|homophilic cell adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|leukocyte migration|positive regulation of apoptosis|regulation of immune response	cell surface|cleavage furrow|focal adhesion|melanosome|neuromuscular junction|ruffle|sarcolemma	identical protein binding|protein heterodimerization activity|receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(717;1.34e-05)|Breast(68;0.0634)				CTCATACTTCGGATTGACCAC	0.368													4	31					0	0	0.000602	0	0
RET	5979	broad.mit.edu	37	10	43596017	43596017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:43596017G>A	uc001jal.2	+	2	374	c.184G>A	c.(184-186)GAG>AAG	p.E62K	RET_uc001jak.1_Missense_Mutation_p.E62K	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	62	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	CGCCCCTGAGGAGGTGCCCAG	0.632		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				16	21					0	0	0.006122	0	0
RET	5979	broad.mit.edu	37	10	43610163	43610163	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:43610163C>T	uc001jal.2	+	11	2305	c.2115C>T	c.(2113-2115)TCC>TCT	p.S705S	RET_uc001jak.1_Silent_p.S705S|RET_uc010qez.1_Silent_p.S451S	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	705	Cytoplasmic (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	ACCAGGTCTCCGTGGATGCCT	0.677		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				11	9					0	0	0.000673	0	0
C10orf10	11067	broad.mit.edu	37	10	45473430	45473430	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:45473430C>T	uc001jbr.3	-	2	339	c.49G>A	c.(49-51)GAG>AAG	p.E17K	RASSF4_uc001jbo.2_Intron|RASSF4_uc001jbp.2_Intron|RASSF4_uc009xmn.2_Intron|RASSF4_uc001jbq.2_Intron	NM_007021	NP_008952	Q9NTK1	DEPP_HUMAN	fasting-induced protein	17						mitochondrion					0						TCCGTGGTCTCCCGAATTGTG	0.612													18	53					0	0	0.001216	0	0
OR13A1	79290	broad.mit.edu	37	10	45798888	45798888	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:45798888T>A	uc001jcc.1	-	4	1292	c.983A>T	c.(982-984)AAT>ATT	p.N328I	OR13A1_uc001jcd.1_Missense_Mutation_p.N324I	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	328	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CACAAGTTAATTTCTGAAGAA	0.433													49	22					0	0	0.003610	0	0
OR13A1	79290	broad.mit.edu	37	10	45799154	45799154	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:45799154G>A	uc001jcc.1	-	4	1026	c.717C>T	c.(715-717)ATC>ATT	p.I239I	OR13A1_uc001jcd.1_Silent_p.I235I	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	239	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCTGGAGACGATGAAGCCAT	0.557													9	65					0	0	0.001368	0	0
SYT15	83849	broad.mit.edu	37	10	46969278	46969278	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:46969278G>A	uc001jea.2	-	2	336	c.183C>T	c.(181-183)TGC>TGT	p.C61C	SYT15_uc001jdz.2_Silent_p.C61C|SYT15_uc001jeb.2_Intron|SYT15_uc010qfp.1_5'Flank	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	61	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						CATGCGGCTGGCAGGGCCTGT	0.627													9	22					0	0	0.000673	0	0
PPYR1	5540	broad.mit.edu	37	10	47087776	47087776	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:47087776G>A	uc001jee.2	+	3	1412	c.993G>A	c.(991-993)AAG>AAA	p.K331K	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.K331K	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	331	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						ACTTCAAGAAGGAGATCAAGG	0.562													11	58					0	0	0.000673	0	0
GDF2	2658	broad.mit.edu	37	10	48413755	48413755	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:48413755C>T	uc001jfa.1	-	2	1276	c.1113G>A	c.(1111-1113)ACG>ACA	p.T371T		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	371					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						TAGCGTGTTTCGTCGGCGTCA	0.582													15	14					0	0	0.002450	0	0
C10orf71	118461	broad.mit.edu	37	10	50531812	50531812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:50531812G>A	uc010qgp.1	+	3	1561	c.1222G>A	c.(1222-1224)GGC>AGC	p.G408S		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	408											0						CAACCAGAGAGGCCCACCTTT	0.468													31	25					0	0	0.003271	0	0
C10orf71	118461	broad.mit.edu	37	10	50532442	50532442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:50532442G>A	uc010qgp.1	+	3	2191	c.1852G>A	c.(1852-1854)GAG>AAG	p.E618K		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	618											0						TGAGAACAAGGAGGTGGAAGG	0.552													6	4					0	0	0.001168	0	0
OGDHL	55753	broad.mit.edu	37	10	50954808	50954808	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:50954808G>A	uc001jie.2	-	10	1426	c.1284C>T	c.(1282-1284)GTC>GTT	p.V428V	OGDHL_uc009xog.2_Silent_p.V455V|OGDHL_uc010qgt.1_Silent_p.V371V|OGDHL_uc010qgu.1_Silent_p.V219V|OGDHL_uc009xoh.2_Silent_p.V219V	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	428					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						GGTTGTTGACGACGACGTGCA	0.587													5	25					0	0	0.001168	0	0
FAM13C	220965	broad.mit.edu	37	10	61029683	61029683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:61029683G>A	uc001jkn.2	-	8	913	c.779C>T	c.(778-780)CCA>CTA	p.P260L	FAM13C_uc001jko.2_Missense_Mutation_p.P260L|FAM13C_uc010qid.1_Missense_Mutation_p.P177L|FAM13C_uc010qie.1_Missense_Mutation_p.P177L|FAM13C_uc010qif.1_Missense_Mutation_p.P282L|FAM13C_uc001jkp.2_Missense_Mutation_p.P177L	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	260										ovary(2)	2						AGTGCTGGGTGGAGATGGGGC	0.428													11	10					0	0	0.001855	0	0
ANK3	288	broad.mit.edu	37	10	61829982	61829982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:61829982C>T	uc001jky.2	-	37	10849	c.10657G>A	c.(10657-10659)GAA>AAA	p.E3553K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3553					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCAAAAACTTCATCATCCCCT	0.448													20	12					0	0	0.001216	0	0
ANK3	288	broad.mit.edu	37	10	61835462	61835462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:61835462G>A	uc001jky.2	-	37	5369	c.5177C>T	c.(5176-5178)CCA>CTA	p.P1726L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1726	Ser-rich.			P -> A (in Ref. 1; AAA64834).	establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGAGGATGATGGATATTTTAG	0.423													14	17					0	0	0.002450	0	0
ANK3	288	broad.mit.edu	37	10	61847919	61847919	+	Nonsense_Mutation	SNP	G	A	A	rs142673853		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:61847919G>A	uc001jky.2	-	29	3718	c.3526C>T	c.(3526-3528)CGA>TGA	p.R1176*	ANK3_uc001jkw.2_Nonsense_Mutation_p.R310*|ANK3_uc009xpa.2_Nonsense_Mutation_p.R310*|ANK3_uc001jkx.2_Nonsense_Mutation_p.R354*|ANK3_uc010qih.1_Nonsense_Mutation_p.R1177*|ANK3_uc001jkz.3_Nonsense_Mutation_p.R1170*|ANK3_uc001jla.1_Nonsense_Mutation_p.R242*|ANK3_uc001jlb.1_Nonsense_Mutation_p.R694*	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1176					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding	p.R1176*(1)		skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGGCCCACTCGAATTCTTTTA	0.468													23	25					0	0	0.005443	0	0
CTNNA3	29119	broad.mit.edu	37	10	67829185	67829185	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:67829185G>A	uc009xpn.1	-	15	2163	c.2040C>T	c.(2038-2040)TTC>TTT	p.F680F	CTNNA3_uc001jmw.2_Silent_p.F680F	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	680					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TTACTTTCTTGAAATCAGCAA	0.383													23	45					0	0	0.004656	0	0
CTNNA3	29119	broad.mit.edu	37	10	67862927	67862927	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:67862927C>T	uc009xpn.1	-	14	2088	c.1965G>A	c.(1963-1965)GGG>GGA	p.G655G	CTNNA3_uc001jmw.2_Silent_p.G655G	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	655					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TATCAGTTTTCCCTTCGGTCT	0.488													11	26					0	0	0.000978	0	0
DNA2	1763	broad.mit.edu	37	10	70182600	70182600	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:70182600G>A	uc001jof.2	-	15	2514	c.2514C>T	c.(2512-2514)TCC>TCT	p.S838S	DNA2_uc001jog.1_Intron|DNA2_uc001joh.1_RNA	NM_001080449	NP_001073918	P51530	DNA2L_HUMAN	DNA replication helicase 2 homolog	752					base-excision repair|DNA replication, removal of RNA primer|mitochondrial DNA repair|mitochondrial DNA replication|positive regulation of DNA replication|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	mitochondrial nucleoid|nucleoplasm	5'-flap endonuclease activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|site-specific endodeoxyribonuclease activity, specific for altered base				0						AAATTTTACGGGAAAATATTG	0.333													11	20					0	0	0.001368	0	0
KIAA1279	26128	broad.mit.edu	37	10	70775725	70775725	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:70775725C>T	uc001joy.2	+	7	1515	c.1419C>T	c.(1417-1419)ATC>ATT	p.I473I		NM_015634	NP_056449	Q96EK5	KBP_HUMAN	KIF1 binding protein	473					cell differentiation|mitochondrial transport|nervous system development	mitochondrion	kinesin binding			ovary(1)	1						ACAGACAGATCCAGTTTGAAA	0.413													9	12					0	0	0.004482	0	0
HKDC1	80201	broad.mit.edu	37	10	71021021	71021021	+	Silent	SNP	C	T	T	rs148312270		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:71021021C>T	uc001jpf.3	+	16	2476	c.2343C>T	c.(2341-2343)TTC>TTT	p.F781F	HKDC1_uc010qje.1_Silent_p.F644F|HKDC1_uc009xqb.2_RNA	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	781					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						GGGGCATCTTCGAAACCAAGT	0.562													14	18					0	0	0.006122	0	0
COL13A1	1305	broad.mit.edu	37	10	71657230	71657230	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:71657230G>A	uc001jpr.1	+	12	1194	c.658_splice	c.e12-1	p.E220_splice	COL13A1_uc001jqj.1_Splice_Site_p.E220_splice|COL13A1_uc001jps.1_Splice_Site_p.E191_splice|COL13A1_uc001jpt.1_Intron|COL13A1_uc001jpu.1_Intron|COL13A1_uc001jpv.1_Splice_Site_p.E220_splice|COL13A1_uc001jpx.1_Splice_Site_p.E220_splice|COL13A1_uc001jpw.1_Intron|COL13A1_uc001jpy.1_Intron|COL13A1_uc001jpz.1_Intron|COL13A1_uc001jqa.1_Splice_Site_p.E182_splice|COL13A1_uc001jqc.1_Splice_Site_p.E220_splice|COL13A1_uc001jqb.1_Splice_Site_p.E191_splice|COL13A1_uc001jql.2_Splice_Site_p.E220_splice|COL13A1_uc001jqd.1_Splice_Site_p.E208_splice|COL13A1_uc001jqe.1_Splice_Site_p.E203_splice|COL13A1_uc001jqf.1_Intron|COL13A1_uc001jqg.1_Splice_Site_p.E220_splice|COL13A1_uc001jqh.1_Splice_Site_p.E220_splice|COL13A1_uc001jqi.1_Splice_Site_p.E220_splice|COL13A1_uc010qjf.1_Intron|COL13A1_uc001jqk.1_Splice_Site_p.E80_splice	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1						cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	TCCCAAACTAGGAGTGCCTAA	0.617													11	8					0	0	0.002450	0	0
SLC29A3	55315	broad.mit.edu	37	10	73121975	73121975	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:73121975C>T	uc001jrr.3	+	6	1095	c.1038C>T	c.(1036-1038)TTC>TTT	p.F346F	SLC29A3_uc001jrs.3_3'UTR|SLC29A3_uc010qjq.1_Silent_p.F200F|SLC29A3_uc001jrt.3_Silent_p.F140F|SLC29A3_uc001jru.3_Silent_p.F158F	NM_018344	NP_060814	Q9BZD2	S29A3_HUMAN	solute carrier family 29 (nucleoside	346	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to membrane|late endosome membrane|lysosomal membrane	nucleoside transmembrane transporter activity				0						CCAAGTTTTTCATCCCCCTCA	0.577													17	82					0	0	0.001523	0	0
ASCC1	51008	broad.mit.edu	37	10	73956619	73956619	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:73956619G>A	uc001jst.1	-	6	631	c.523C>T	c.(523-525)CAG>TAG	p.Q175*	ASCC1_uc001jsr.1_Nonsense_Mutation_p.Q62*|ASCC1_uc001jss.1_Nonsense_Mutation_p.Q147*|ASCC1_uc001jsu.1_Nonsense_Mutation_p.Q147*|ASCC1_uc010qju.1_Nonsense_Mutation_p.Q168*			Q8N9N2	ASCC1_HUMAN	RecName: Full=Activating signal cointegrator 1 complex subunit 1; AltName: Full=ASC-1 complex subunit p50; AltName: Full=Trip4 complex subunit p50;	175					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|transcription factor complex	RNA binding				0						AATCCTTCCTGAACCTCAACT	0.408													4	11					0	0	0.000248	0	0
DNAJB12	54788	broad.mit.edu	37	10	74096350	74096350	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:74096350A>T	uc010qjv.1	-	7	1190	c.1040T>A	c.(1039-1041)GTC>GAC	p.V347D	DNAJB12_uc001jsz.2_Missense_Mutation_p.V347D|DNAJB12_uc001jta.2_Missense_Mutation_p.V347D	NM_017626	NP_060096	Q9NXW2	DJB12_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 12	313					protein folding	endoplasmic reticulum|integral to membrane	heat shock protein binding|unfolded protein binding				0						ATTCCGCTCGACTGTTTTGAG	0.552													12	107					0	0	0.002450	0	0
VCL	7414	broad.mit.edu	37	10	75854195	75854195	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:75854195C>T	uc001jwd.2	+	11	1613	c.1519C>T	c.(1519-1521)CCC>TCC	p.P507S	VCL_uc009xrr.2_Missense_Mutation_p.P256S|VCL_uc010qky.1_Missense_Mutation_p.P414S|VCL_uc001jwe.2_Missense_Mutation_p.P507S|VCL_uc010qkz.1_Intron	NM_014000	NP_054706	P18206	VINC_HUMAN	vinculin isoform meta-VCL	507	N-terminal globular head.|3.|3 X 112 AA tandem repeats.				adherens junction assembly|apical junction assembly|cell-matrix adhesion|cellular component movement|epithelial cell-cell adhesion|lamellipodium assembly|morphogenesis of an epithelium|muscle contraction|negative regulation of cell migration|platelet activation|platelet degranulation|protein localization at cell surface	costamere|cytosol|extracellular region|focal adhesion	actin binding|alpha-catenin binding|beta-catenin binding|beta-dystroglycan binding|cadherin binding|structural molecule activity		VCL/ALK(4)	kidney(4)|ovary(1)|central_nervous_system(1)	6	Prostate(51;0.0112)					GATTGATAATCCCACAGTGGA	0.517													16	10					0	0	0.004007	0	0
DLG5	9231	broad.mit.edu	37	10	79566529	79566529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:79566529G>A	uc001jzk.2	-	26	5024	c.4954C>T	c.(4954-4956)CCC>TCC	p.P1652S	DLG5_uc001jzi.2_Missense_Mutation_p.P407S|DLG5_uc001jzj.2_Missense_Mutation_p.P1067S|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1652	SH3.				cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TATTTGCTGGGAATCTGCCCG	0.642													22	69					0	0	0.005443	0	0
DLG5	9231	broad.mit.edu	37	10	79570914	79570914	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:79570914G>A	uc001jzk.2	-	23	4471	c.4401C>T	c.(4399-4401)ATC>ATT	p.I1467I	DLG5_uc001jzi.2_Silent_p.I222I|DLG5_uc001jzj.2_Silent_p.I882I|DLG5_uc009xru.1_RNA	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	1467					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TCAGTGGGTCGATGACAGATG	0.657													27	22					0	0	0.001512	0	0
ANXA11	311	broad.mit.edu	37	10	81917756	81917756	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:81917756G>A	uc001kbq.1	-	15	2127	c.1302C>T	c.(1300-1302)GCC>GCT	p.A434A	ANXA11_uc010qlx.1_Silent_p.A534A|ANXA11_uc001kbr.1_Silent_p.A434A|ANXA11_uc001kbs.1_Silent_p.A434A|ANXA11_uc001kbt.1_Silent_p.A434A|ANXA11_uc010qly.1_Silent_p.A401A|ANXA11_uc009xsq.1_Silent_p.A438A|ANXA11_uc001kbu.1_Silent_p.A434A	NM_145869	NP_665876	P50995	ANX11_HUMAN	annexin A11	434					cell cycle|cytokinesis, completion of separation|phagocytosis|response to calcium ion	azurophil granule|melanosome|midbody|nuclear envelope|nucleoplasm|phagocytic vesicle|specific granule|spindle	calcium-dependent phospholipid binding|calcium-dependent protein binding|S100 alpha binding			ovary(1)	1	Prostate(51;0.00985)|all_epithelial(25;0.0951)		Colorectal(32;0.109)			CCGCAAAGAAGGCTGGGGTAT	0.517													12	34					0	0	0.001855	0	0
GRID1	2894	broad.mit.edu	37	10	87373164	87373164	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:87373164C>T	uc001kdl.1	-	15	2702	c.2601G>A	c.(2599-2601)GAG>GAA	p.E867E	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.E438E	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	867	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	GGGTGCTGACCTCCTTGGGGG	0.607										Multiple Myeloma(13;0.14)			8	23					0	0	0.003080	0	0
MMRN2	79812	broad.mit.edu	37	10	88703170	88703170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:88703170C>T	uc001kea.2	-	6	1498	c.1371G>A	c.(1369-1371)ATG>ATA	p.M457I	MMRN2_uc010qmn.1_Missense_Mutation_p.M100I|MMRN2_uc009xtb.2_Missense_Mutation_p.M414I	NM_024756	NP_079032	Q9H8L6	MMRN2_HUMAN	multimerin 2 precursor	457	Potential.					extracellular space				large_intestine(1)	1						TGTTCTCCTCCATGATCAGAG	0.602													9	15					0	0	0.004482	0	0
HTR7	3363	broad.mit.edu	37	10	92502257	92502257	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:92502257C>T	uc001kha.2	-	4	1665	c.1422G>A	c.(1420-1422)AAG>AAA	p.K474K	HTR7_uc001kgz.2_Missense_Mutation_p.G442S|HTR7_uc001khb.2_3'UTR	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	474	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	GAATCATGACCTTTTTTTCTA	0.328													10	6					0	0	0.001855	0	0
RBP4	5950	broad.mit.edu	37	10	95353766	95353766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:95353766C>T	uc001kit.2	-	5	466	c.382G>A	c.(382-384)GAC>AAC	p.D128N		NM_006744	NP_006735	P02753	RET4_HUMAN	retinol-binding protein 4, plasma precursor	128					cardiac muscle tissue development|embryonic organ morphogenesis|embryonic retina morphogenesis in camera-type eye|embryonic skeletal system development|female genitalia morphogenesis|gluconeogenesis|glucose homeostasis|heart trabecula formation|lung development|maintenance of gastrointestinal epithelium|negative regulation of cardiac muscle cell proliferation|positive regulation of immunoglobulin secretion|positive regulation of insulin secretion|response to retinoic acid|retinol metabolic process|urinary bladder development|uterus development|vagina development	extracellular space	protein binding|retinal binding|retinol binding				0		Colorectal(252;0.122)			Vitamin A(DB00162)	GTGTCGTAGTCTGTGTCGACG	0.572													24	22					0	0	0.003330	0	0
CYP2C18	1562	broad.mit.edu	37	10	96448009	96448009	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:96448009G>A	uc001kjv.3	+	3	785	c.459G>A	c.(457-459)GTG>GTA	p.V153V	CYP2C18_uc001kjw.3_Silent_p.V153V|CYP2C19_uc009xus.1_Silent_p.V18V|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	153					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GCTGCCTTGTGGAGGAGTTGA	0.388													16	15					0	0	0.007413	0	0
TLL2	7093	broad.mit.edu	37	10	98205876	98205876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:98205876C>T	uc001kml.1	-	3	562	c.336G>A	c.(334-336)ATG>ATA	p.M112I	TLL2_uc009xvf.1_Missense_Mutation_p.M112I	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	112					cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		TGCCAGTGTCCATGGCTGTGG	0.448													15	71					0	0	0.004007	0	0
C10orf2	56652	broad.mit.edu	37	10	102753064	102753064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:102753064C>T	uc001ksf.2	+	5	2527	c.1852C>T	c.(1852-1854)CCG>TCG	p.P618S	C10orf2_uc001ksg.2_3'UTR|C10orf2_uc001ksi.2_3'UTR|C10orf2_uc010qpv.1_Missense_Mutation_p.P164S|C10orf2_uc001ksh.2_RNA	NM_021830	NP_068602	Q96RR1	PEO1_HUMAN	twinkle isoform A	618	SF4 helicase.				cell death|mitochondrial DNA replication|protein hexamerization|protein homooligomerization|transcription from mitochondrial promoter	mitochondrial nucleoid	5'-3' DNA helicase activity|ATP binding|protease binding|single-stranded DNA binding			ovary(1)	1		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;7.18e-11)|all cancers(201;8.75e-09)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AGGTGTCTTCCCGCTTGAGTT	0.517													46	60					0	0	0.003214	0	0
POLL	27343	broad.mit.edu	37	10	103340064	103340065	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:103340064_103340065GG>AA	uc001ktg.1	-	7	2069_2070	c.1303_1304CC>TT	c.(1303-1305)CCA>TTA	p.P435L	DPCD_uc010qpz.1_5'UTR|POLL_uc001ktd.1_Missense_Mutation_p.P108L|POLL_uc001kte.1_Missense_Mutation_p.P127L|POLL_uc001kth.1_Missense_Mutation_p.P160L|POLL_uc001kti.1_Missense_Mutation_p.P435L|POLL_uc001ktj.1_Missense_Mutation_p.P435L|POLL_uc001ktf.2_Missense_Mutation_p.P343L|POLL_uc001ktk.1_Missense_Mutation_p.P174L|POLL_uc010qqa.1_Missense_Mutation_p.P174L|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Missense_Mutation_p.P435L|POLL_uc001ktl.2_Missense_Mutation_p.P347L|POLL_uc010qqc.1_Missense_Mutation_p.P127L	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	435					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		CCGGCCATCTGGGTGAGTGATG	0.589								DNA_polymerases_(catalytic_subunits)					5	48					0	0	0.004672	0	0
GBF1	8729	broad.mit.edu	37	10	104130601	104130601	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:104130601A>T	uc001kux.1	+	29	3881	c.3641A>T	c.(3640-3642)GAA>GTA	p.E1214V	GBF1_uc001kuy.1_Missense_Mutation_p.E1214V|GBF1_uc001kuz.1_Missense_Mutation_p.E1215V	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1214					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CTCCGGAGAGAAGAGATCAGT	0.517													5	17					0	0	0.000602	0	0
TRIM8	81603	broad.mit.edu	37	10	104416142	104416142	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:104416142G>A	uc001kvz.2	+	5	1171	c.1048G>A	c.(1048-1050)GGC>AGC	p.G350S		NM_030912	NP_112174	Q9BZR9	TRIM8_HUMAN	tripartite motif-containing 8	350						cytoplasm|PML body	ligase activity|protein homodimerization activity|zinc ion binding			ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		AATGCTAGAAGGTGAGGGTGG	0.572													3	17					0	0	0.004672	0	0
SLK	9748	broad.mit.edu	37	10	105727584	105727584	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:105727584C>G	uc001kxo.1	+	1	115	c.81C>G	c.(79-81)GAC>GAG	p.D27E	SLK_uc001kxp.1_Missense_Mutation_p.D27E	NM_014720	NP_055535	Q9H2G2	SLK_HUMAN	serine/threonine kinase 2	27					apoptosis|nucleotide-excision repair	cytoplasm|plasma membrane	ATP binding|DNA binding|nuclease activity|protein serine/threonine kinase activity			ovary(2)|stomach(2)|skin(2)|lung(1)|kidney(1)	8		Colorectal(252;0.178)		Epithelial(162;5.81e-10)|all cancers(201;2.35e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TGAAGAGGGACCTGAACCCCG	0.483													17	57					0	0	0.006122	0	0
ITPRIP	85450	broad.mit.edu	37	10	106074922	106074922	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:106074922G>A	uc001kye.2	-	2	961	c.888C>T	c.(886-888)GAC>GAT	p.D296D	ITPRIP_uc001kyf.2_Silent_p.D296D|ITPRIP_uc001kyg.2_Silent_p.D296D	NM_033397	NP_203755	Q8IWB1	IPRI_HUMAN	inositol 1,4,5-triphosphate receptor interacting	296						plasma membrane					0						CCTGCATCGTGTCCAGGTACA	0.607													37	32					0	0	0.006230	0	0
SORCS3	22986	broad.mit.edu	37	10	106918722	106918722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:106918722G>A	uc001kyi.1	+	11	1929	c.1702G>A	c.(1702-1704)GAG>AAG	p.E568K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	568	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTCTAGCAAGGAGACAGCCCC	0.393													9	15					0	0	0.006214	0	0
SORCS3	22986	broad.mit.edu	37	10	107022245	107022245	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:107022245C>T	uc001kyi.1	+	26	3827	c.3600C>T	c.(3598-3600)GTC>GTT	p.V1200V		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1200	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ACACGCGGGTCATAGGTACAT	0.537													4	17					0	0	0.000248	0	0
C10orf81	79949	broad.mit.edu	37	10	115534631	115534631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:115534631G>A	uc001lat.1	+	9	1370	c.808G>A	c.(808-810)GAA>AAA	p.E270K	C10orf81_uc001lar.1_Missense_Mutation_p.E276K|C10orf81_uc009xyc.1_Missense_Mutation_p.E188K|C10orf81_uc001las.1_Missense_Mutation_p.E188K|C10orf81_uc001lau.1_Missense_Mutation_p.E90K	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	270										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		CAGCAAAGAGGAACCCCAGAC	0.468													4	31					0	0	0.000248	0	0
ADRB1	153	broad.mit.edu	37	10	115804334	115804334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:115804334C>T	uc001lba.2	+	1	529	c.443C>T	c.(442-444)ACC>ATC	p.T148I		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	148	Helical; Name=3; (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	AGCATCGAGACCCTGTGTGTC	0.582													53	45					0	0	0.003610	0	0
FAM160B1	57700	broad.mit.edu	37	10	116605952	116605952	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:116605952C>T	uc001lcb.2	+	10	1559	c.1224C>T	c.(1222-1224)CTC>CTT	p.L408L	FAM160B1_uc001lcc.2_Silent_p.L408L	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	408										lung(1)	1						TGGGTATTCTCACATCCACTG	0.433													54	50					0	0	0.003610	0	0
INPP5F	22876	broad.mit.edu	37	10	121541275	121541275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:121541275G>A	uc001leo.2	+	3	473	c.307G>A	c.(307-309)GAG>AAG	p.E103K	INPP5F_uc001len.3_Missense_Mutation_p.E103K	NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	103							phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		TCAGGATCTTGAGCTAGAGGT	0.393													16	11					0	0	0.001216	0	0
FGFR2	2263	broad.mit.edu	37	10	123245036	123245036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:123245036C>T	uc010qtk.1	-	17	2715	c.2068G>A	c.(2068-2070)GGG>AGG	p.G690R	FGFR2_uc010qtg.1_Missense_Mutation_p.G578R|FGFR2_uc010qth.1_Missense_Mutation_p.G575R|FGFR2_uc010qti.1_Missense_Mutation_p.G601R|FGFR2_uc010qtj.1_Missense_Mutation_p.G691R|FGFR2_uc010qtl.1_Missense_Mutation_p.G574R|FGFR2_uc010qtm.1_Missense_Mutation_p.G573R|FGFR2_uc001lfl.3_Missense_Mutation_p.G691R|FGFR2_uc001lfm.2_Missense_Mutation_p.G602R|FGFR2_uc001lfg.3_Missense_Mutation_p.G298R|FGFR2_uc001lfk.1_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	690	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	ATTAACACCCCGAAGGACCAG	0.512		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				8	21					0	0	0.004482	0	0
TACC2	10579	broad.mit.edu	37	10	123970633	123970633	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:123970633G>A	uc001lfv.2	+	9	7053	c.6693G>A	c.(6691-6693)AGG>AGA	p.R2231R	TACC2_uc001lfw.2_Silent_p.R377R|TACC2_uc009xzx.2_Silent_p.R2186R|TACC2_uc010qtv.1_Silent_p.R2235R|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Silent_p.R309R|TACC2_uc001lga.2_Silent_p.R309R|TACC2_uc009xzy.2_Silent_p.R309R|TACC2_uc001lgb.2_Silent_p.R266R|TACC2_uc010qtw.1_Silent_p.R326R	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2231						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTGTCGGGAGGAAAACGCTGC	0.647													16	10					0	0	0.004990	0	0
HTRA1	5654	broad.mit.edu	37	10	124249007	124249007	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:124249007G>A	uc001lgj.2	+	3	770	c.642G>A	c.(640-642)CTG>CTA	p.L214L		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	214	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				AAGATGGACTGATCGTGACAA	0.493													22	54					0	0	0.003330	0	0
DMBT1	1755	broad.mit.edu	37	10	124390770	124390770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:124390770C>T	uc001lgk.1	+	46	6038	c.5932C>T	c.(5932-5934)CGT>TGT	p.R1978C	DMBT1_uc001lgl.1_Missense_Mutation_p.R1968C|DMBT1_uc001lgm.1_Missense_Mutation_p.R1350C|DMBT1_uc009xzz.1_Missense_Mutation_p.R1978C|DMBT1_uc010qtx.1_Missense_Mutation_p.R698C|DMBT1_uc009yab.1_Missense_Mutation_p.R681C|DMBT1_uc009yac.1_Missense_Mutation_p.R272C	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1978	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CTGTAATCATCGTGAAGATGC	0.542													13	49					0	0	0.003163	0	0
C10orf120	399814	broad.mit.edu	37	10	124457572	124457572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:124457572C>T	uc001lgn.2	-	3	717	c.685G>A	c.(685-687)GAG>AAG	p.E229K		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	229										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				TCTGCCTCCTCTTTCTTATCT	0.388													3	25					0	0	0.000248	0	0
C10orf120	399814	broad.mit.edu	37	10	124459188	124459188	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:124459188A>C	uc001lgn.2	-	1	151	c.119T>G	c.(118-120)TTT>TGT	p.F40C		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	40										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				TTGATCCTGAAAGGAAGAGTT	0.443													6	27					0	0	0.003080	0	0
CUZD1	50624	broad.mit.edu	37	10	124593308	124593308	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:124593308G>A	uc001lgq.2	-	8	1863	c.1531C>T	c.(1531-1533)CGC>TGC	p.R511C	CUZD1_uc001lgp.2_Missense_Mutation_p.R230C|CUZD1_uc009yad.2_Missense_Mutation_p.R230C|CUZD1_uc009yaf.2_Missense_Mutation_p.R145C|CUZD1_uc001lgr.2_Missense_Mutation_p.R230C|CUZD1_uc010qty.1_Missense_Mutation_p.R230C|CUZD1_uc009yae.2_Missense_Mutation_p.R230C|CUZD1_uc001lgs.2_Missense_Mutation_p.R511C|CUZD1_uc010qtz.1_Missense_Mutation_p.R511C	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	511	Extracellular (Potential).|ZP.				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TGATTGCAGCGAGACTGGTGG	0.408													15	23					0	0	0.004007	0	0
FAM24A	118670	broad.mit.edu	37	10	124671180	124671180	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:124671180G>A	uc001lgv.2	+	2	151	c.30G>A	c.(28-30)AAG>AAA	p.K10K		NM_001029888	NP_001025059	A6NFZ4	FA24A_HUMAN	family with sequence similarity 24, member A	10						extracellular region				ovary(2)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.124)|COAD - Colon adenocarcinoma(40;0.141)		TCAGGACGAAGATCATGATCG	0.493													25	80					0	0	0.003954	0	0
C10orf90	118611	broad.mit.edu	37	10	128147617	128147617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:128147617G>A	uc001ljq.2	-	6	2010	c.1889C>T	c.(1888-1890)CCT>CTT	p.P630L	C10orf90_uc001ljp.2_Missense_Mutation_p.P486L|C10orf90_uc010qum.1_Missense_Mutation_p.P727L|C10orf90_uc001ljo.2_RNA	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	630										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		ACCACTCAGAGGATGGGGAAT	0.582													12	14					0	0	0.001855	0	0
LRRC27	80313	broad.mit.edu	37	10	134175022	134175022	+	Missense_Mutation	SNP	C	T	T	rs139048900		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:134175022C>T	uc010quw.1	+	9	1427	c.1232C>T	c.(1231-1233)CCG>CTG	p.P411L	LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Missense_Mutation_p.P411L|LRRC27_uc001llj.2_Missense_Mutation_p.P349L|LRRC27_uc001llk.3_Missense_Mutation_p.P284L	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	411										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		CCACTGAATCCGCCTGGAAAA	0.453													40	32					0	0	0.007835	0	0
KNDC1	85442	broad.mit.edu	37	10	135015303	135015303	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:135015303C>T	uc001llz.1	+	17	3289	c.3288C>T	c.(3286-3288)GCC>GCT	p.A1096A	KNDC1_uc001lma.1_Silent_p.A1031A|KNDC1_uc001lmb.1_Silent_p.A508A	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1096					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GGTGCAGCGCCTTCTACGAGG	0.721													4	5					0	0	0.001168	0	0
TUBGCP2	10844	broad.mit.edu	37	10	135101771	135101771	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:135101771G>A	uc001lmg.1	-	11	1941	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F	TUBGCP2_uc001lmf.1_Silent_p.F121F|TUBGCP2_uc010qvc.1_Silent_p.F556F|TUBGCP2_uc009ybk.1_Silent_p.F528F|TUBGCP2_uc010qvd.1_Silent_p.F398F|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	528					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		TGAAGTGCACGAAGAAGTCGC	0.677													32	13					0	0	0.001786	0	0
FRG2B	441581	broad.mit.edu	37	10	135438890	135438890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr10:135438890C>T	uc010qvg.1	-	4	603	c.550G>A	c.(550-552)GAG>AAG	p.E184K		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	184						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		TAAACAGCCTCTGACATAGCT	0.577													18	139					0	0	0.001882	0	0
PDDC1	347862	broad.mit.edu	37	11	774016	774016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:774016G>A	uc001lrc.2	-	3	264	c.239C>T	c.(238-240)TCC>TTC	p.S80F	PDDC1_uc010qwm.1_Missense_Mutation_p.S30F|PDDC1_uc001lrd.2_Missense_Mutation_p.S80F|PDDC1_uc001lrf.1_Missense_Mutation_p.S80F|PDDC1_uc001lrg.1_RNA|PDDC1_uc009ycg.2_Missense_Mutation_p.S30F|PDDC1_uc010qwn.1_RNA|PDDC1_uc010qwo.1_RNA|PDDC1_uc010qwp.1_Missense_Mutation_p.S80F|PDDC1_uc010qwq.1_Missense_Mutation_p.S30F|PDDC1_uc010qwr.1_Missense_Mutation_p.S80F|PDDC1_uc010qws.1_Missense_Mutation_p.S30F	NM_182612	NP_872418	Q8NB37	PDDC1_HUMAN	Parkinson disease 7 domain containing 1	80						extracellular region					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;3.66e-26)|Epithelial(43;2.43e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-19)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACCATCGATGGACTCGAGCTT	0.602													7	29					0	0	0.001984	0	0
MUC2	4583	broad.mit.edu	37	11	1086451	1086451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:1086451C>T	uc001lsx.1	+	23	3187	c.3160C>T	c.(3160-3162)CTC>TTC	p.L1054F		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	1054	VWFD 3.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GTGCAGCATCCTCAAAAGCAG	0.657													5	5					0	0	0.000602	0	0
MUC2	4583	broad.mit.edu	37	11	1093547	1093548	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:1093547_1093548CC>AT	uc001lsx.1	+	31	12479_12480	c.12452_12453CC>AT	c.(12451-12453)ACC>AAT	p.T4151N		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4151				GTQTPTT -> STKSTTV (in Ref. 4).		inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	aagagtacaaccgtgacaccca	0.223													11	4					0	0	0.004672	0	0
MUC5B	727897	broad.mit.edu	37	11	1269230	1269230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:1269230G>A	uc009ycr.1	+	50	12830	c.12704G>A	c.(12703-12705)GGA>GAA	p.G4235E	MUC5B_uc001ltb.2_Missense_Mutation_p.G3710E	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3707	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GAGTCCACTGGATCCACGGCC	0.662													36	46					0	0	0.003610	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587													4	24					0	0	0.000248	0	0
TRIM21	6737	broad.mit.edu	37	11	4406621	4406621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:4406621G>A	uc001lyy.1	-	7	1435	c.1322C>T	c.(1321-1323)CCT>CTT	p.P441L		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	441	B30.2/SPRY.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		GGGCCGCAGAGGTCCTGTAAA	0.498													5	9					0	0	0.000602	0	0
TRIM21	6737	broad.mit.edu	37	11	4406950	4406950	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:4406950G>A	uc001lyy.1	-	7	1106	c.993C>T	c.(991-993)GTC>GTT	p.V331V		NM_003141	NP_003132	P19474	RO52_HUMAN	tripartite motif protein 21	331	B30.2/SPRY.				cell cycle|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein deubiquitination|positive regulation of cell cycle|protein autoubiquitination|protein destabilization|protein monoubiquitination|protein polyubiquitination|protein trimerization	cytoplasmic mRNA processing body|nucleus	DNA binding|protein binding|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|lung(1)	4		Medulloblastoma(188;0.0025)|Breast(177;0.0101)|all_neural(188;0.0227)		Epithelial(150;2.08e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0851)|LUSC - Lung squamous cell carcinoma(625;0.194)		GGGCACCCAGGACCATAGGAT	0.512													5	5					0	0	0.001168	0	0
OR51D1	390038	broad.mit.edu	37	11	4661314	4661314	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:4661314C>T	uc010qyk.1	+	1	294	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCAGTCTTTTCCTGATGGGCA	0.542													11	13					0	0	0.000673	0	0
OR52R1	119695	broad.mit.edu	37	11	4825161	4825161	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:4825161G>A	uc010qym.1	-	1	687	c.687C>T	c.(685-687)ATC>ATT	p.I229I		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	150	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCAGCATCACGATGGTCCCCA	0.572													15	20					0	0	0.002450	0	0
HBD	3045	broad.mit.edu	37	11	5255402	5255402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:5255402G>A	uc001maf.1	-	2	329	c.134C>T	c.(133-135)TCC>TTC	p.S45F		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	45					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCCCCAAAGGACTCAAAGAA	0.527													16	22					0	0	0.004990	0	0
OR51B4	79339	broad.mit.edu	37	11	5322889	5322889	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:5322889G>A	uc010qza.1	-	1	288	c.288C>T	c.(286-288)TTC>TTT	p.F96F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGATTGGGTGAAACAGGCAG	0.507													13	28					0	0	0.001855	0	0
OR51B2	79345	broad.mit.edu	37	11	5345204	5345204	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:5345204C>T	uc001mao.1	-	1	379	c.324G>A	c.(322-324)GTG>GTA	p.V108V	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033180	NP_149420	Q9Y5P1	O51B2_HUMAN	olfactory receptor, family 51, subfamily B,	108	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AACCTGATTCCACAACAGAAA	0.463													5	12					0	0	0.000602	0	0
OR51M1	390059	broad.mit.edu	37	11	5410985	5410985	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:5410985T>G	uc010qzc.1	+	1	357	c.357T>G	c.(355-357)TTT>TTG	p.F119L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	119						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCCACTCTTTTTCCTTCATGG	0.502													39	68					0	0	0.006230	0	0
OR51Q1	390061	broad.mit.edu	37	11	5444289	5444289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:5444289C>T	uc010qzd.1	+	1	859	c.859C>T	c.(859-861)CCG>TCG	p.P287S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004757	NP_001004757	Q8NH59	O51Q1_HUMAN	olfactory receptor, family 51, subfamily Q,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.18e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCTGGCACCCCCGGTGATGAA	0.448													12	18					0	0	0.000978	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529376	5529376	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:5529376G>A	uc001may.1	-	2	1499	c.1413C>T	c.(1411-1413)ATC>ATT	p.I471I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	471										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGGCTCAGGGATTCCAGGAA	0.547													14	28					0	0	0.002450	0	0
OR52B2	255725	broad.mit.edu	37	11	6191460	6191460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:6191460G>A	uc010qzy.1	-	1	97	c.97C>T	c.(97-99)CTT>TTT	p.L33F		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGAGGCAAAGAGGTATTGAC	0.458													9	22					0	0	0.004482	0	0
OR2D3	120775	broad.mit.edu	37	11	6942899	6942899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:6942899C>T	uc010rav.1	+	1	667	c.667C>T	c.(667-669)CTC>TTC	p.L223F		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	223	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CGTGGTAATCCTCCTGGCCCC	0.473													6	8					0	0	0.001168	0	0
TUB	7275	broad.mit.edu	37	11	8117065	8117065	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:8117065C>T	uc001mga.2	+	5	567	c.418C>T	c.(418-420)CTG>TTG	p.L140L	TUB_uc010rbk.1_Silent_p.L146L|TUB_uc001mfy.2_Silent_p.L195L	NM_177972	NP_813977	P50607	TUB_HUMAN	tubby isoform b	140					phagocytosis|positive regulation of phagocytosis|response to stimulus	cytoplasm|extracellular region|nucleus|plasma membrane				ovary(1)	1		all_lung(207;6.91e-20)|Lung NSC(207;3.36e-17)		Epithelial(150;1.69e-62)|BRCA - Breast invasive adenocarcinoma(625;8.54e-06)|LUSC - Lung squamous cell carcinoma(625;0.000184)		GCCAGCAGCACTGGCAGAAGA	0.642													19	21					0	0	0.003330	0	0
TMEM9B	56674	broad.mit.edu	37	11	8969979	8969979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:8969979G>A	uc001mhe.1	-	5	614	c.485C>T	c.(484-486)TCC>TTC	p.S162F	TMEM9B_uc001mhf.1_Missense_Mutation_p.S88F|TMEM9B_uc010rbt.1_Missense_Mutation_p.S88F	NM_020644	NP_065695	Q9NQ34	TMM9B_HUMAN	TMEM9 domain family, member B precursor	162					positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	signal transducer activity				0				Epithelial(150;4.39e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0237)		TCGACTGCGGGAGCGGGCTAG	0.498													17	33					0	0	0.004990	0	0
NRIP3	56675	broad.mit.edu	37	11	9009685	9009685	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:9009685T>A	uc001mhg.2	-	2	433	c.319A>T	c.(319-321)ATG>TTG	p.M107L	NRIP3_uc010rbu.1_Missense_Mutation_p.M107L	NM_020645	NP_065696	Q9NQ35	NRIP3_HUMAN	nuclear receptor interacting protein 3	107					proteolysis		aspartic-type endopeptidase activity				0				Epithelial(150;4.77e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0241)		ACCAAAATCATGTCATCCTCC	0.493													14	23					0	0	0.003163	0	0
SPON1	10418	broad.mit.edu	37	11	14278196	14278196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:14278196G>A	uc001mle.2	+	11	1805	c.1267G>A	c.(1267-1269)GAT>AAT	p.D423N		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	423					cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		TGACAATGTCGATGATATTGT	0.338													18	35					0	0	0.007413	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17167466	17167466	+	Silent	SNP	C	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:17167466C>G	uc001mmq.3	-	6	1650	c.1584G>C	c.(1582-1584)GTG>GTC	p.V528V	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Silent_p.V148V|PIK3C2A_uc001mmr.3_Intron|PIK3C2A_uc010rcx.1_Silent_p.V528V|PIK3C2A_uc009ygv.1_Silent_p.V528V	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	528					cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	TGTTTAAATCCACGGGTGTTT	0.328													20	40					0	0	0.001882	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195094	18195094	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:18195094C>T	uc001mnv.1	+	1	711	c.291C>T	c.(289-291)ATC>ATT	p.I97I		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	97	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TCCGCAAAATCCTCGTTTCTG	0.522													20	31					0	0	0.007413	0	0
TMEM86A	144110	broad.mit.edu	37	11	18722508	18722508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:18722508C>T	uc001moz.1	+	2	133	c.50C>T	c.(49-51)CCG>CTG	p.P17L		NM_153347	NP_699178	Q8N2M4	TM86A_HUMAN	transmembrane protein 86A	17						integral to membrane				ovary(1)	1						AAACTGGTGCCGTTCTTCAAG	0.572													29	63					0	0	0.007291	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955715	18955715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:18955715G>A	uc001mpg.2	-	1	835	c.617C>T	c.(616-618)TCC>TTC	p.S206F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	206	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TATCTTCCGGGATCCACAGAG	0.502													9	18					0	0	0.000978	0	0
SLC6A5	9152	broad.mit.edu	37	11	20676289	20676289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:20676289G>A	uc001mqd.2	+	16	2542	c.2269G>A	c.(2269-2271)GAC>AAC	p.D757N	SLC6A5_uc009yic.2_Missense_Mutation_p.D522N	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	757	Cytoplasmic (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	GCCACAGCCGGACTGGGGCCC	0.562													17	37					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	11	31086634	31086634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:31086634C>T	uc009yjk.1	-	7	778	c.709G>A	c.(709-711)GAG>AAG	p.E237K	uc009yjl.1_Missense_Mutation_p.E165K|DCDC1_uc001msu.1_Missense_Mutation_p.E408K					RecName: Full=Doublecortin domain-containing protein 5;																		ATGTGATACTCTGTCTGGGTC	0.453													8	10					0	0	0.003080	0	0
PAX6	5080	broad.mit.edu	37	11	31823165	31823165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:31823165C>T	uc001mtd.3	-	5	1191	c.301G>A	c.(301-303)GAA>AAA	p.E101K	PAX6_uc001mte.3_Missense_Mutation_p.E101K|PAX6_uc001mtg.3_Missense_Mutation_p.E115K|PAX6_uc001mtf.3_Missense_Mutation_p.E101K|PAX6_uc001mth.3_Missense_Mutation_p.E101K|PAX6_uc009yjr.2_Missense_Mutation_p.E101K	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	101	Paired.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					TCTCGGATTTCCCAAGCAAAG	0.507									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				29	48					0	0	0.004878	0	0
WT1	7490	broad.mit.edu	37	11	32439129	32439129	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:32439129A>G	uc001mtn.1	-	4	1140	c.944T>C	c.(943-945)TTA>TCA	p.L315S	WT1_uc001mtl.1_Missense_Mutation_p.L103S|WT1_uc001mtm.1_Missense_Mutation_p.L103S|WT1_uc001mto.1_Missense_Mutation_p.L315S|WT1_uc001mtp.1_Missense_Mutation_p.L315S|WT1_uc001mtq.1_Missense_Mutation_p.L315S|WT1_uc009yjs.1_RNA	NM_024426	NP_077744	P19544	WT1_HUMAN	Wilms tumor 1 isoform D	247					adrenal cortex formation|branching involved in ureteric bud morphogenesis|camera-type eye development|cardiac muscle cell fate commitment|cellular response to cAMP|cellular response to gonadotropin stimulus|germ cell development|glomerular basement membrane development|glomerular visceral epithelial cell differentiation|induction of apoptosis|male genitalia development|male gonad development|mesenchymal to epithelial transition|metanephric epithelium development|metanephric S-shaped body morphogenesis|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of female gonad development|negative regulation of metanephric glomerular mesangial cell proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of translation|positive regulation of male gonad development|positive regulation of transcription, DNA-dependent|posterior mesonephric tubule development|regulation of organ formation|RNA splicing|sex determination|vasculogenesis|visceral serous pericardium development	cytoplasm|nuclear speck|nucleoplasm	C2H2 zinc finger domain binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding	p.S315P(1)	EWSR1/WT1(231)	haematopoietic_and_lymphoid_tissue(318)|soft_tissue(231)|kidney(132)|pleura(2)|lung(2)|upper_aerodigestive_tract(1)|peritoneum(1)	687	Breast(20;0.247)		OV - Ovarian serous cystadenocarcinoma(30;0.128)			TTACCCCTTTAAGGTGGCTCC	0.373			D|Mis|N|F|S	EWSR1	Wilms|desmoplastic small round cell tumor	Wilms			Denys-Drash_syndrome|Frasier_syndrome|Familial_Wilms_tumor|Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				12	16					0	0	0.001855	0	0
QSER1	79832	broad.mit.edu	37	11	32955313	32955313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:32955313C>T	uc001mty.2	+	4	2389	c.2122C>T	c.(2122-2124)CCA>TCA	p.P708S	QSER1_uc001mtz.1_Missense_Mutation_p.P469S|QSER1_uc001mua.2_Missense_Mutation_p.P213S	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	708	Gln-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					GATTCAAATTCCAAATCATGC	0.403													16	22					0	0	0.004007	0	0
SYT13	57586	broad.mit.edu	37	11	45268028	45268028	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:45268028G>A	uc001myq.2	-	5	1008	c.882C>T	c.(880-882)TCC>TCT	p.S294S	SYT13_uc009yku.1_Silent_p.S150S	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	294	C2 2.|Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						GGTAGCTGATGGATAGTAGGA	0.567													3	21					0	0	0.000248	0	0
CHST1	8534	broad.mit.edu	37	11	45671632	45671632	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:45671632T>C	uc001mys.1	-	4	1513	c.842A>G	c.(841-843)AAC>AGC	p.N281S		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	281	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GGACACGGAGTTGGAGAAGTC	0.637													24	30					0	0	0.005443	0	0
CRY2	1408	broad.mit.edu	37	11	45891260	45891260	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:45891260C>T	uc010rgn.1	+	7	1171	c.1149C>T	c.(1147-1149)ATC>ATT	p.I383I	CRY2_uc009ykw.2_Silent_p.I301I|CRY2_uc010rgo.1_Silent_p.I105I	NM_021117	NP_066940	Q49AN0	CRY2_HUMAN	cryptochrome 2 (photolyase-like) isoform 1	362	FAD-binding.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	blue light photoreceptor activity|damaged DNA binding|DNA photolyase activity|nucleotide binding|protein binding|single-stranded DNA binding			central_nervous_system(1)	1						TTGATGCCATCATGACCCAAC	0.652													17	34					0	0	0.004990	0	0
CRY2	1408	broad.mit.edu	37	11	45891313	45891313	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:45891313T>G	uc010rgn.1	+	7	1224	c.1202T>G	c.(1201-1203)GTG>GGG	p.V401G	CRY2_uc009ykw.2_Missense_Mutation_p.V319G|CRY2_uc010rgo.1_Missense_Mutation_p.V123G	NM_021117	NP_066940	Q49AN0	CRY2_HUMAN	cryptochrome 2 (photolyase-like) isoform 1	380	FAD-binding.				DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	blue light photoreceptor activity|damaged DNA binding|DNA photolyase activity|nucleotide binding|protein binding|single-stranded DNA binding			central_nervous_system(1)	1						CGGCATGCCGTGGCCTGCTTC	0.642													15	18					0	0	0.006122	0	0
DGKZ	8525	broad.mit.edu	37	11	46398734	46398734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:46398734C>T	uc001ncn.1	+	26	3003	c.2878C>T	c.(2878-2880)CCC>TCC	p.P960S	DGKZ_uc001nch.1_Missense_Mutation_p.P788S|DGKZ_uc010rgq.1_Missense_Mutation_p.P715S|DGKZ_uc001ncj.1_Missense_Mutation_p.P738S|DGKZ_uc010rgr.1_Missense_Mutation_p.P737S|DGKZ_uc001nck.1_Missense_Mutation_p.P550S|DGKZ_uc001ncl.2_Missense_Mutation_p.P772S|DGKZ_uc001ncm.2_Missense_Mutation_p.P771S|DGKZ_uc009yky.1_Missense_Mutation_p.P772S|DGKZ_uc010rgs.1_Missense_Mutation_p.P749S	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	960					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		TTCCCCTCTCCCCACCTCACC	0.483													7	10					0	0	0.004482	0	0
LRP4	4038	broad.mit.edu	37	11	46897155	46897155	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:46897155G>A	uc001ndn.3	-	27	3923	c.3777C>T	c.(3775-3777)ACC>ACT	p.T1259T		NM_002334	NP_002325	O75096	LRP4_HUMAN	low density lipoprotein receptor-related protein	1259	Extracellular (Potential).|LDL-receptor class B 14.				endocytosis|negative regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane	calcium ion binding|receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4				Lung(87;0.159)		AGTCGAGCAGGGTGAGGCCAT	0.572													7	18					0	0	0.003080	0	0
OR4X1	390113	broad.mit.edu	37	11	48285814	48285814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:48285814G>A	uc010rht.1	+	1	402	c.402G>A	c.(400-402)ATG>ATA	p.M134I		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						TGGCCATCATGAACCAGCGAA	0.557													9	25					0	0	0.000673	0	0
OR4C13	283092	broad.mit.edu	37	11	49974034	49974034	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:49974034A>C	uc010rhz.1	+	1	60	c.60A>C	c.(58-60)AAA>AAC	p.K20N		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						AGAATCCAAAAATGCAGAAAA	0.368													23	23					0	0	0.001882	0	0
LOC646813	646813	broad.mit.edu	37	11	50375289	50375289	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:50375289C>T	uc001nhe.2	+	3		c.180C>T			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						TCCTGAAGTTCACATTGTTCT	0.328													4	17					0	0	0.000602	0	0
OR4A16	81327	broad.mit.edu	37	11	55111342	55111342	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:55111342C>T	uc010rie.1	+	1	666	c.666C>T	c.(664-666)TTC>TTT	p.F222F		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						TCCTAAACTTCCTTAAAACTT	0.423													7	18					0	0	0.003080	0	0
OR4C15	81309	broad.mit.edu	37	11	55322137	55322137	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:55322137C>T	uc010rig.1	+	1	355	c.355C>T	c.(355-357)CTG>TTG	p.L119L		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTGGGCTTCCTGTCCTTCCT	0.463										HNSCC(20;0.049)			7	20					0	0	0.001984	0	0
OR4S2	219431	broad.mit.edu	37	11	55418781	55418781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:55418781G>A	uc001nhs.1	+	1	402	c.402G>A	c.(400-402)ATG>ATA	p.M134I		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TGACCATCATGAACCGGGAGA	0.428													16	3					0	0	0.004007	0	0
OR4C6	219432	broad.mit.edu	37	11	55432975	55432975	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:55432975C>T	uc001nht.3	+	3	598	c.333C>T	c.(331-333)ATC>ATT	p.I111I	OR4C6_uc010rik.1_Silent_p.I111I	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TGGGGATCATCCTCCTCACTG	0.537													10	12					0	0	0.006214	0	0
OR8K5	219453	broad.mit.edu	37	11	55927077	55927077	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:55927077G>A	uc010rja.1	-	1	717	c.717C>T	c.(715-717)TCC>TCT	p.S239S		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				AACCACATGTGGAGAAAGCCT	0.408													4	13					0	0	0.000248	0	0
OR5J2	282775	broad.mit.edu	37	11	55944788	55944788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:55944788C>T	uc010rjb.1	+	1	695	c.695C>T	c.(694-696)TCA>TTA	p.S232L		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					CACTCAGCATCAGGCAGACAG	0.483													15	29					0	0	0.002450	0	0
OR5M3	219482	broad.mit.edu	37	11	56237466	56237466	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:56237466T>A	uc010rjk.1	-	1	508	c.508A>T	c.(508-510)ATT>TTT	p.I170F		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					TTGATCTCAATTTTTCCACAG	0.413													9	23					0	0	0.006214	0	0
OR5AK2	390181	broad.mit.edu	37	11	56756999	56756999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:56756999G>A	uc010rjp.1	+	1	611	c.611G>A	c.(610-612)GGA>GAA	p.G204E		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GTCTTTGTGGGATCTAACTTG	0.408													32	37					0	0	0.002445	0	0
GIF	2694	broad.mit.edu	37	11	59599244	59599244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:59599244C>T	uc001noi.2	-	8	1147	c.1099G>A	c.(1099-1101)GGC>AGC	p.G367S		NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	367	Cobalamin binding.				cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						ACGACAAGGCCCCAAGATGTC	0.383													9	14					0	0	0.006214	0	0
MS4A1	931	broad.mit.edu	37	11	60235761	60235761	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:60235761G>A	uc001npp.2	+	8	1130	c.714G>A	c.(712-714)CAG>CAA	p.Q238Q	MS4A1_uc001npq.2_Silent_p.Q238Q|MS4A1_uc009yna.2_Silent_p.Q238Q|MS4A1_uc009ymz.2_Silent_p.Q225Q|MS4A1_uc010rlc.1_Silent_p.Q71Q	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member	238	Cytoplasmic (Potential).				B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	AAAAAGAACAGACTATTGAAA	0.338													4	10					0	0	0.000602	0	0
MS4A8B	83661	broad.mit.edu	37	11	60470895	60470895	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:60470895C>T	uc001npv.2	+	3	467	c.264C>T	c.(262-264)TCC>TCT	p.S88S	MS4A8B_uc009yne.1_Silent_p.S88S	NM_031457	NP_113645	Q9BY19	M4A8B_HUMAN	membrane-spanning 4-domains, subfamily A, member	88	Helical; (Potential).					integral to membrane	receptor activity				0						GCCTCGGCTCCATCATGGCGA	0.562													14	25					0	0	0.003163	0	0
DAGLA	747	broad.mit.edu	37	11	61495658	61495658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:61495658G>A	uc001nsa.2	+	7	781	c.670G>A	c.(670-672)GAG>AAG	p.E224K		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	224	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CCTCTTTGCGGAGTTCTTCCG	0.622													26	49					0	0	0.002445	0	0
DAGLA	747	broad.mit.edu	37	11	61511320	61511320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:61511320G>A	uc001nsa.2	+	20	2599	c.2488G>A	c.(2488-2490)GAA>AAA	p.E830K		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	830	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CATCCCCGAGGAAAACCCATC	0.667													54	97					0	0	0.003610	0	0
C11orf9	745	broad.mit.edu	37	11	61539185	61539185	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:61539185G>A	uc001nsc.1	+	6	1050	c.954G>A	c.(952-954)CAG>CAA	p.Q318Q	C11orf9_uc001nse.1_Silent_p.Q309Q	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	318	NDT80.|Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CCCGTGTCCAGACACCGCCTT	0.692													28	48					0	0	0.006320	0	0
AHNAK	79026	broad.mit.edu	37	11	62295345	62295345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:62295345G>A	uc001ntl.2	-	5	6844	c.6544C>T	c.(6544-6546)CCC>TCC	p.P2182S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2182					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GAGATCTTGGGGGTCTTGAAG	0.483													56	94					0	0	0.003610	0	0
HNRNPUL2	221092	broad.mit.edu	37	11	62483386	62483386	+	Missense_Mutation	SNP	C	T	T	rs755246		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:62483386C>T	uc001nuw.2	-	12	2198	c.2005G>A	c.(2005-2007)GAC>AAC	p.D669N	HNRNPUL2_uc001nuu.1_RNA	NM_001079559	NP_001073027	Q1KMD3	HNRL2_HUMAN	heterogeneous nuclear ribonucleoprotein U-like	669	Tyr-rich.				cell killing	nucleus	ATP binding|nucleic acid binding				0						GCCCGGTTGTCGTAGCCTCGG	0.612													5	13					0	0	0.001168	0	0
CHRM1	1128	broad.mit.edu	37	11	62678024	62678024	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:62678024G>A	uc001nwi.2	-	2	950	c.549C>T	c.(547-549)CTC>CTT	p.L183L		NM_000738	NP_000729	P11229	ACM1_HUMAN	cholinergic receptor, muscarinic 1	183	Extracellular (Potential).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell proliferation|nervous system development|positive regulation of cell proliferation|protein modification process	cell junction|integral to plasma membrane|membrane fraction|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity|protein binding				0					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Benztropine(DB00245)|Bethanechol(DB01019)|Biperiden(DB00810)|Buclizine(DB00354)|Carbachol(DB00411)|Carbinoxamine(DB00748)|Cevimeline(DB00185)|Clidinium(DB00771)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Cyclopentolate(DB00979)|Cycrimine(DB00942)|Desipramine(DB01151)|Dicyclomine(DB00804)|Diphenidol(DB01231)|Doxylamine(DB00366)|Ethopropazine(DB00392)|Flavoxate(DB01148)|Glycopyrrolate(DB00986)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methantheline(DB00940)|Methotrimeprazine(DB01403)|Methylscopolamine(DB00462)|Metixene(DB00340)|Metoclopramide(DB01233)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Oxyphenonium(DB00219)|Pilocarpine(DB01085)|Pirenzepine(DB00670)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propantheline(DB00782)|Propiomazine(DB00777)|Quinacrine(DB01103)|Scopolamine(DB00747)|Solifenacin(DB01591)|Succinylcholine(DB00202)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)|Trihexyphenidyl(DB00376)|Trospium(DB00209)	TGGGCTGGGAGAGGAACTGGA	0.592													7	16					0	0	0.001984	0	0
SLC22A6	9356	broad.mit.edu	37	11	62751815	62751815	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:62751815G>A	uc001nwk.2	-	1	655	c.348C>T	c.(346-348)TTC>TTT	p.F116F	SLC22A6_uc001nwl.2_Silent_p.F116F|SLC22A6_uc001nwj.2_Silent_p.F116F|SLC22A6_uc001nwm.2_Silent_p.F116F	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	116	Extracellular (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						TGGTAGATGGGAAGGTGCTGT	0.552													15	29					0	0	0.004990	0	0
SLC22A8	9376	broad.mit.edu	37	11	62768198	62768198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:62768198G>A	uc001nwo.2	-	3	567	c.431C>T	c.(430-432)TCT>TTT	p.S144F	SLC22A8_uc001nwn.1_5'Flank|SLC22A8_uc001nwp.2_Missense_Mutation_p.S144F|SLC22A8_uc009yom.2_Missense_Mutation_p.S21F|SLC22A8_uc010rmm.1_Missense_Mutation_p.S53F|SLC22A8_uc009yon.2_Missense_Mutation_p.S144F	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	144	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						TCACCTGTCAGACAGGTCTCC	0.562													9	8					0	0	0.004482	0	0
SLC22A25	387601	broad.mit.edu	37	11	62933713	62933713	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:62933713G>A	uc001nwr.1	-	7	1088	c.1088C>T	c.(1087-1089)CCT>CTT	p.P363L	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	363	Helical; Name=7; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GCCCCAAAAAGGGATGGTACT	0.448													8	10					0	0	0.004482	0	0
PLA2G16	11145	broad.mit.edu	37	11	63357683	63357683	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:63357683G>A	uc001nxh.2	-	3	699	c.276C>T	c.(274-276)ATC>ATT	p.I92I	PLA2G16_uc001nxi.2_Silent_p.I104I|PLA2G16_uc009you.1_Silent_p.I92I	NM_007069	NP_009000	P53816	PAG16_HUMAN	HRAS-like suppressor 3	92					lipid catabolic process	integral to membrane|perinuclear region of cytoplasm	hydrolase activity|protein binding			ovary(1)	1						CCCGCTGGATGATTTTGCTGC	0.552													15	25					0	0	0.004007	0	0
CCDC88B	283234	broad.mit.edu	37	11	64112200	64112200	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:64112200C>T	uc001nzy.2	+	14	2231	c.2187C>T	c.(2185-2187)GCC>GCT	p.A729A	CCDC88B_uc009ypo.1_Silent_p.A726A|CCDC88B_uc001nzz.1_Silent_p.A378A	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	729	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						AGCAGGAGGCCCTCAGGGAGG	0.622													13	24					0	0	0.004007	0	0
SLC22A12	116085	broad.mit.edu	37	11	64359245	64359245	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:64359245C>T	uc001oam.1	+	1	964	c.217C>T	c.(217-219)CTG>TTG	p.L73L	SLC22A12_uc009ypr.1_Silent_p.L73L|SLC22A12_uc001oal.1_5'UTR|SLC22A12_uc009yps.1_Silent_p.L73L|SLC22A12_uc001oan.1_Silent_p.L73L|SLC22A12_uc009ypt.2_5'Flank	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	73					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						TGAGGCCCTCCTGGCTATTTC	0.692													6	16					0	0	0.001168	0	0
SLC22A12	116085	broad.mit.edu	37	11	64359326	64359326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:64359326G>A	uc001oam.1	+	1	1045	c.298G>A	c.(298-300)GAC>AAC	p.D100N	SLC22A12_uc009ypr.1_Missense_Mutation_p.D100N|SLC22A12_uc001oal.1_5'UTR|SLC22A12_uc009yps.1_Missense_Mutation_p.D100N|SLC22A12_uc001oan.1_Missense_Mutation_p.D100N|SLC22A12_uc009ypt.2_5'Flank	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	100					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						GCAGCTCTTGGACCCCAATGC	0.662													11	8					0	0	0.001368	0	0
SLC22A12	116085	broad.mit.edu	37	11	64366015	64366015	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:64366015C>T	uc001oam.1	+	5	1605	c.858C>T	c.(856-858)CTC>CTT	p.L286L	SLC22A12_uc009ypr.1_Silent_p.L311L|SLC22A12_uc001oal.1_Silent_p.L65L|SLC22A12_uc009yps.1_Silent_p.L252L|SLC22A12_uc001oan.1_Silent_p.L178L|SLC22A12_uc009ypt.2_Silent_p.L104L	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	286					cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						CACGATGGCTCCTCACCACAG	0.662													7	3					0	0	0.003080	0	0
NAALADL1	10004	broad.mit.edu	37	11	64825817	64825817	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:64825817C>T	uc001ocn.2	-	1	193	c.177G>A	c.(175-177)GAG>GAA	p.E59E	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	59	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						ACCTGAGGTTCTCCCGGATCC	0.637													6	27					0	0	0.001984	0	0
MAP3K11	4296	broad.mit.edu	37	11	65374967	65374967	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:65374967C>T	uc001oew.2	-	5	1756	c.1263G>A	c.(1261-1263)GAG>GAA	p.E421E	MAP3K11_uc001oev.2_5'Flank|MAP3K11_uc010rol.1_Silent_p.E164E|MAP3K11_uc001oex.1_5'UTR	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	421	Leucine-zipper 1.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						TCAGCTCCTCCTCGCGGCTCA	0.711													7	10					0	0	0.004482	0	0
RELA	5970	broad.mit.edu	37	11	65425868	65425868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:65425868G>A	uc001ofg.2	-	8	907	c.767C>T	c.(766-768)CCC>CTC	p.P256L	RELA_uc001ofh.2_Missense_Mutation_p.P253L|RELA_uc010ron.1_Missense_Mutation_p.P267L|RELA_uc009yqr.2_Missense_Mutation_p.P203L|RELA_uc001ofe.2_Missense_Mutation_p.P256L|RELA_uc001off.2_Missense_Mutation_p.P256L|RELA_uc009yqs.1_Intron	NM_021975	NP_068810	Q04206	TF65_HUMAN	v-rel reticuloendotheliosis viral oncogene	256	RHD.				anti-apoptosis|cellular defense response|cytokine-mediated signaling pathway|defense response to virus|inflammatory response|innate immune response|interspecies interaction between organisms|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription, DNA-dependent|nerve growth factor receptor signaling pathway|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of inflammatory response|response to interleukin-1|response to UV-B|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|transcription factor complex	activating transcription factor binding|chromatin binding|identical protein binding|NF-kappaB binding|phosphate binding|protein kinase binding|protein N-terminus binding|repressing transcription factor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding			lung(3)|ovary(1)	4						GTCTGCGTAGGGAGGGGTCCG	0.622													15	21					0	0	0.007413	0	0
SPTBN2	6712	broad.mit.edu	37	11	66468227	66468228	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:66468227_66468228CC>TT	uc001ojd.2	-	16	3414_3415	c.3342_3343GG>AA	c.(3340-3345)GTGGAG>GTAAAG	p.E1115K		NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1115	Spectrin 8.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TGGGCCCGCTCCACCTCTCCCC	0.688													5	7					0	0	0.004672	0	0
INPPL1	3636	broad.mit.edu	37	11	71946937	71946938	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:71946937_71946938CC>TT	uc001osf.2	+	25	2933_2934	c.2786_2787CC>TT	c.(2785-2787)TCC>TTT	p.S929F	INPPL1_uc001osg.2_Missense_Mutation_p.S687F	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	929					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						TGCCCGCTCTCCAGGTTATTTG	0.653													24	35					0	0	0.004672	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73074350	73074350	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:73074350C>T	uc001otu.2	+	15	5117	c.5096C>T	c.(5095-5097)CCT>CTT	p.P1699L		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1699					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						TCCTTTGGGCCTGGTGGTCCC	0.662													4	8					0	0	0.000602	0	0
GDPD4	220032	broad.mit.edu	37	11	76980019	76980019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:76980019C>T	uc001oyf.2	-	8	825	c.574G>A	c.(574-576)GAG>AAG	p.E192K		NM_182833	NP_878253	Q6W3E5	GDPD4_HUMAN	glycerophosphodiester phosphodiesterase domain	192	Extracellular (Potential).				glycerol metabolic process|lipid metabolic process	integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding			skin(1)	1						CCCAAATTCTCCTTCTCCTGA	0.453													19	48					0	0	0.001216	0	0
C11orf82	220042	broad.mit.edu	37	11	82642923	82642923	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:82642923C>T	uc001ozt.2	+	6	787	c.543C>T	c.(541-543)TTC>TTT	p.F181F	C11orf82_uc010rsr.1_5'UTR|C11orf82_uc010rss.1_5'UTR|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	181					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						TTGACTACTTCCATCAACTTT	0.413													20	42					0	0	0.001523	0	0
DLG2	1740	broad.mit.edu	37	11	83195190	83195190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:83195190C>T	uc001paj.2	-	17	2263	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K	DLG2_uc001pai.2_Intron|DLG2_uc010rsy.1_Intron|DLG2_uc010rsz.1_Intron|DLG2_uc010rta.1_Intron|DLG2_uc001pak.2_Missense_Mutation_p.E759K|DLG2_uc010rtb.1_Missense_Mutation_p.E621K|DLG2_uc010rsw.1_Intron|DLG2_uc010rsx.1_Intron	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	654						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCACTGGTTTCCTGCTCACTC	0.408													7	16					0	0	0.001984	0	0
NOX4	50507	broad.mit.edu	37	11	89135701	89135701	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:89135701C>T	uc001pct.2	-	9	878	c.639G>A	c.(637-639)CTG>CTA	p.L213L	NOX4_uc009yvr.2_Silent_p.L188L|NOX4_uc001pcu.2_Silent_p.L139L|NOX4_uc001pcw.2_Intron|NOX4_uc001pcx.2_Intron|NOX4_uc001pcv.2_Silent_p.L213L|NOX4_uc009yvo.2_Intron|NOX4_uc010rtu.1_Silent_p.L47L|NOX4_uc009yvp.2_Intron|NOX4_uc010rtv.1_Silent_p.L189L|NOX4_uc009yvq.2_Silent_p.L189L|NOX4_uc009yvs.1_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	213	Extracellular (Potential).|Ferric oxidoreductase.				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				TTTGATACTTCAGCAGCCCTC	0.343													10	19					0	0	0.006214	0	0
FAT3	120114	broad.mit.edu	37	11	92086102	92086102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:92086102C>T	uc001pdj.3	+	1	841	c.824C>T	c.(823-825)TCG>TTG	p.S275L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	275	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTTCCTTTCTCGTTGGAAAAA	0.448										TCGA Ovarian(4;0.039)			70	126					0	0	0.003610	0	0
FAT3	120114	broad.mit.edu	37	11	92616261	92616261	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:92616261C>T	uc001pdj.3	+	23	12656	c.12639C>T	c.(12637-12639)CGC>CGT	p.R4213R	FAT3_uc001pdi.3_Silent_p.R653R	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4213	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGAACCTGCGCGGCAGTGGGG	0.657										TCGA Ovarian(4;0.039)			71	112					0	0	0.003610	0	0
PANX1	24145	broad.mit.edu	37	11	93913320	93913321	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:93913320_93913321CC>TT	uc001per.2	+	4	1483_1484	c.1098_1099CC>TT	c.(1096-1101)CTCCTG>CTTTTG	p.366_367LL>LL	PANX1_uc001peq.2_Silent_p.366_367LL>LL	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	366_367	Cytoplasmic (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CAATGCTACTCCTGACAAACCT	0.47													8	14					0	0	0.004672	0	0
GPR83	10888	broad.mit.edu	37	11	94113596	94113596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:94113596G>A	uc001pet.2	-	4	1163	c.991C>T	c.(991-993)CAC>TAC	p.H331Y		NM_016540	NP_057624	Q9NYM4	GPR83_HUMAN	G protein-coupled receptor 83 precursor	331	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			central_nervous_system(2)|ovary(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GCAAACCAGTGGAAGGCAAAG	0.522													19	42					0	0	0.001523	0	0
KDM4DL	390245	broad.mit.edu	37	11	94759484	94759484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:94759484G>A	uc010ruf.1	+	1	1063	c.763G>A	c.(763-765)GGG>AGG	p.G255R		NM_001161630	NP_001155102	B2RXH2	KD4DL_HUMAN	lysine (K)-specific demethylase 4D-like	255	JmjC.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CAAGGAAAATGGGATTCCCTT	0.557													4	8					0	0	0.000248	0	0
CNTN5	53942	broad.mit.edu	37	11	99786865	99786865	+	Silent	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:99786865T>G	uc001pga.2	+	7	996	c.657T>G	c.(655-657)CCT>CCG	p.P219P	CNTN5_uc009ywv.1_Silent_p.P219P|CNTN5_uc001pfz.2_Silent_p.P219P|CNTN5_uc001pgb.2_Silent_p.P145P	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	219	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TGTGCTCTCCTCCGCCACATT	0.453													3	3					0	0	0.004672	0	0
CNTN5	53942	broad.mit.edu	37	11	99932099	99932099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:99932099C>T	uc001pga.2	+	10	1475	c.1136C>T	c.(1135-1137)TCC>TTC	p.S379F	CNTN5_uc009ywv.1_Missense_Mutation_p.S379F|CNTN5_uc001pfz.2_Missense_Mutation_p.S379F|CNTN5_uc001pgb.2_Missense_Mutation_p.S305F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	379	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GGAAAAAATTCCTTTCGTGGA	0.408													5	15					0	0	0.001168	0	0
CNTN5	53942	broad.mit.edu	37	11	100211289	100211289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:100211289G>A	uc001pga.2	+	22	3164	c.2825G>A	c.(2824-2826)GGA>GAA	p.G942E	CNTN5_uc001pgb.2_Missense_Mutation_p.G868E|CNTN5_uc010ruk.1_Missense_Mutation_p.G213E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	942	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GGATTAGAAGGAAATACGTTA	0.438													4	4					0	0	0.000248	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101765618	101765618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:101765618C>T	uc001pgl.2	-	8	1435	c.839G>A	c.(838-840)GGA>GAA	p.G280E		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	280	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		ACCAGCATTTCCTGAATACCG	0.294													6	15					0	0	0.001984	0	0
KIAA1377	57562	broad.mit.edu	37	11	101834363	101834363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:101834363C>T	uc001pgm.2	+	6	2867	c.2597C>T	c.(2596-2598)TCT>TTT	p.S866F	KIAA1377_uc001pgn.2_Missense_Mutation_p.S822F|KIAA1377_uc010run.1_Missense_Mutation_p.S667F|KIAA1377_uc009yxa.1_Missense_Mutation_p.S667F	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	866							protein binding	p.S866S(1)		breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AATGCTTGTTCTGACCTAGTC	0.383													8	16					0	0	0.003080	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103026062	103026062	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:103026062C>T	uc001pho.2	+	25	3720	c.3576C>T	c.(3574-3576)ATC>ATT	p.I1192I	DYNC2H1_uc001phn.1_Silent_p.I1192I|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1192	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TGTAACAGATCGTAATTCCTA	0.338													4	11					0	0	0.000602	0	0
KBTBD3	143879	broad.mit.edu	37	11	105923920	105923920	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:105923920G>T	uc001pja.2	-	4	2136	c.1496C>A	c.(1495-1497)GCA>GAA	p.A499E	KBTBD3_uc001pjb.2_Missense_Mutation_p.A499E|KBTBD3_uc009yxm.2_Missense_Mutation_p.A420E	NM_198439	NP_940841	Q8NAB2	KBTB3_HUMAN	BTB and kelch domain containing 3	495	Kelch 4.									ovary(1)|central_nervous_system(1)	2		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.43e-05)|Epithelial(105;0.00418)|all cancers(92;0.0299)		AATTAATGTTGCATGAAAAAA	0.348													9	7					3.09899e-07	3.92508e-07	0.004482	1	0
EXPH5	23086	broad.mit.edu	37	11	108389067	108389067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:108389067G>A	uc001pkk.2	-	5	637	c.526C>T	c.(526-528)CAT>TAT	p.H176Y	EXPH5_uc010rvy.1_5'UTR|EXPH5_uc010rvz.1_Missense_Mutation_p.H20Y|EXPH5_uc010rwa.1_Missense_Mutation_p.H100Y	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	176					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TCAACTAGATGATTTTCCAGA	0.433													5	16					0	0	0.000602	0	0
IL18	3606	broad.mit.edu	37	11	112014327	112014327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:112014327C>T	uc001pnb.1	-	6	794	c.574G>A	c.(574-576)GAA>AAA	p.E192K	IL18_uc001pna.1_Missense_Mutation_p.E166K|IL18_uc009yym.1_Missense_Mutation_p.E188K	NM_001562	NP_001553	Q14116	IL18_HUMAN	interleukin 18 proprotein	192					angiogenesis|cell-cell signaling|chemokine biosynthetic process|granulocyte macrophage colony-stimulating factor biosynthetic process|interferon-gamma biosynthetic process|interleukin-13 biosynthetic process|interleukin-2 biosynthetic process|positive regulation of activated T cell proliferation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of interferon-gamma production|positive regulation of interleukin-17 production|positive regulation of natural killer cell proliferation|positive regulation of NK T cell proliferation|regulation of cell adhesion|sleep|T-helper 1 type immune response|type 2 immune response	cytosol|extracellular space	cytokine activity|signal transducer activity				0		all_cancers(61;5.7e-14)|all_epithelial(67;3.4e-08)|Melanoma(852;8.81e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;6.72e-07)|Epithelial(105;8.15e-07)|all cancers(92;1.43e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.055)		AGCTAGTCTTCGTTTTGAACA	0.189													4	9					0	0	0.000602	0	0
ANKK1	255239	broad.mit.edu	37	11	113268025	113268025	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:113268025G>A	uc001pny.2	+	6	1012	c.918G>A	c.(916-918)AGG>AGA	p.R306R		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	306							ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		CCCTGGCCAGGAAGGTGTCCT	0.597													6	11					0	0	0.001984	0	0
DRD2	1813	broad.mit.edu	37	11	113281467	113281467	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:113281467C>T	uc001pnz.2	-	7	1635	c.1314G>A	c.(1312-1314)CTG>CTA	p.L438L	DRD2_uc010rwv.1_Silent_p.L437L|DRD2_uc001poa.3_Silent_p.L438L|DRD2_uc001pob.3_Silent_p.L409L	NM_000795	NP_000786	P14416	DRD2_HUMAN	dopamine receptor D2 isoform long	438	Cytoplasmic (By similarity).				activation of phospholipase C activity by dopamine receptor signaling pathway|adenohypophysis development|adult walking behavior|arachidonic acid secretion|axonogenesis|behavioral response to cocaine|behavioral response to ethanol|branching morphogenesis of a nerve|cerebral cortex GABAergic interneuron migration|circadian regulation of gene expression|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|intracellular protein kinase cascade|negative regulation of blood pressure|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of dopamine receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|negative regulation of synaptic transmission, glutamatergic|neurological system process involved in regulation of systemic arterial blood pressure|peristalsis|phosphatidylinositol metabolic process|positive regulation of dopamine uptake|positive regulation of growth hormone secretion|positive regulation of neuroblast proliferation|prepulse inhibition|protein localization|regulation of heart rate|regulation of long-term neuronal synaptic plasticity|regulation of potassium ion transport|regulation of sodium ion transport|regulation of synaptic transmission, GABAergic|release of sequestered calcium ion into cytosol|response to amphetamine|response to drug|response to histamine|response to morphine|sensory perception of smell|synapse assembly|temperature homeostasis|visual learning	integral to plasma membrane	dopamine D2 receptor activity|dopamine receptor activity, coupled via Gi/Go|drug binding|potassium channel regulator activity|protein binding			pancreas(1)|skin(1)	2		all_cancers(61;3.91e-16)|all_epithelial(67;2.95e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000977)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0494)		BRCA - Breast invasive adenocarcinoma(274;5.77e-06)|Epithelial(105;6.66e-05)|all cancers(92;0.000307)|OV - Ovarian serous cystadenocarcinoma(223;0.216)	Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Aripiprazole(DB01238)|Bromocriptine(DB01200)|Buspirone(DB00490)|Cabergoline(DB00248)|Carphenazine(DB01038)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clozapine(DB00363)|Domperidone(DB01184)|Droperidol(DB00450)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Fluspirilene(DB04842)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Mesoridazine(DB00933)|Metoclopramide(DB01233)|Minaprine(DB00805)|Molindone(DB01618)|Olanzapine(DB00334)|Paliperidone(DB01267)|Pergolide(DB01186)|Perphenazine(DB00850)|Pimozide(DB01100)|Pramipexole(DB00413)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Remoxipride(DB00409)|Risperidone(DB00734)|Ropinirole(DB00268)|Sertindole(DB06144)|Sulpiride(DB00391)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trifluoperazine(DB00831)|Triflupromazine(DB00508)|Ziprasidone(DB00246)|Zuclopenthixol(DB01624)	GGAGGATCTTCAGGAAGGCCT	0.617													25	42					0	0	0.007291	0	0
HTR3B	9177	broad.mit.edu	37	11	113815350	113815350	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:113815350C>T	uc001pok.2	+	8	1030	c.963C>T	c.(961-963)ATC>ATT	p.I321I	HTR3B_uc001pol.2_Silent_p.I310I	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	321	Helical; Name=3; (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		CTAAGTCCATCGTGTTGGTCA	0.537													13	33					0	0	0.001368	0	0
FAM55A	120400	broad.mit.edu	37	11	114393615	114393615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:114393615G>A	uc001ppa.2	-	5	1085	c.668C>T	c.(667-669)CCC>CTC	p.P223L	FAM55A_uc010rxd.1_Missense_Mutation_p.P72L	NM_152315	NP_689528	Q8N323	FA55A_HUMAN	hypothetical protein LOC120400	365						extracellular region					0		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;3.02e-06)|Epithelial(105;0.000144)|all cancers(92;0.00106)		TACAACTTTGGGGAAGTAGTA	0.368													5	14					0	0	0.000602	0	0
APOA4	337	broad.mit.edu	37	11	116691654	116691654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:116691654C>T	uc001pps.1	-	3	1224	c.1120G>A	c.(1120-1122)GAG>AAG	p.E374K		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		tgctgttgctccAGCTCAGGG	0.468													95	190					0	0	0.003610	0	0
PCSK7	9159	broad.mit.edu	37	11	117089788	117089788	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:117089788G>A	uc001pqr.2	-	11	1617	c.1416C>T	c.(1414-1416)CTC>CTT	p.L472L		NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	472	Catalytic.|Extracellular (Potential).				peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		CTGCATTCACGAGCCTCCAGG	0.562			T	IGH@	MLCLS								5	11					0	0	0.000602	0	0
AMICA1	120425	broad.mit.edu	37	11	118071218	118071218	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:118071218C>T	uc001psk.2	-	7	1056	c.882G>A	c.(880-882)TTG>TTA	p.L294L	AMICA1_uc001psg.2_Silent_p.L104L|AMICA1_uc001psh.2_Silent_p.L255L|AMICA1_uc009yzw.1_RNA|AMICA1_uc001psi.2_Silent_p.L284L|AMICA1_uc001psj.2_Silent_p.L283L|AMICA1_uc010rxw.1_Silent_p.L255L|AMICA1_uc010rxx.1_Silent_p.L294L|AMICA1_uc001psl.1_Silent_p.L250L	NM_001098526	NP_001091996	Q86YT9	JAML1_HUMAN	adhesion molecule, interacts with CXADR antigen	294	Helical; (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	cell junction|integral to membrane				ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		TCTTCACGATCAATATCAGAA	0.552													13	23					0	0	0.002450	0	0
MFRP	83552	broad.mit.edu	37	11	119212430	119212430	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:119212430A>C	uc001pwj.2	-	13	1728	c.1568T>G	c.(1567-1569)CTG>CGG	p.L523R	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Missense_Mutation_p.L405R	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:Variant_position_missing_in_Q9BXJ0_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		GGGCACAAGCAGCCCACACAG	0.657													13	22					0	0	0.001855	0	0
POU2F3	25833	broad.mit.edu	37	11	120170364	120170364	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:120170364T>C	uc001pxc.2	+	5	392	c.290T>C	c.(289-291)CTT>CCT	p.L97P	POU2F3_uc010rzk.1_Silent_p.A35A|POU2F3_uc010rzl.1_Missense_Mutation_p.L27P	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	97					negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		CTCCAGCAGCTTGTGCTGGTT	0.562											OREG0021419	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	21					0	0	0.000673	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120312858	120312858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:120312858G>A	uc001pxl.1	+	15	1256	c.1249G>A	c.(1249-1251)GAA>AAA	p.E417K	ARHGEF12_uc009zat.2_Missense_Mutation_p.E398K|ARHGEF12_uc010rzn.1_Missense_Mutation_p.E314K|ARHGEF12_uc009zau.1_Missense_Mutation_p.E314K	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	417	RGSL.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		CAATTCCAAAGAAACTCGTCG	0.358			T	MLL	AML								6	11					0	0	0.001984	0	0
GRIK4	2900	broad.mit.edu	37	11	120833291	120833291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:120833291G>A	uc001pxn.2	+	18	2454	c.2167G>A	c.(2167-2169)GAA>AAA	p.E723K	GRIK4_uc009zav.1_Missense_Mutation_p.E723K|GRIK4_uc009zaw.1_Missense_Mutation_p.E723K|GRIK4_uc009zax.1_Missense_Mutation_p.E723K	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	723	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	CTTCCTCCTGGAATCCACCAT	0.542													15	17					0	0	0.003163	0	0
TECTA	7007	broad.mit.edu	37	11	120989117	120989117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:120989117C>T	uc010rzo.1	+	6	893	c.893C>T	c.(892-894)TCC>TTC	p.S298F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	298	VWFC.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix		p.S298S(1)		breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CAGGAGGCTTCCTGTAGCCCC	0.547													12	20					0	0	0.001368	0	0
TECTA	7007	broad.mit.edu	37	11	120989291	120989291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:120989291C>T	uc010rzo.1	+	6	1067	c.1067C>T	c.(1066-1068)TCC>TTC	p.S356F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	356	VWFD 1.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TTGCAGACTTCCAGCCTCCCT	0.557													18	25					0	0	0.007413	0	0
SORL1	6653	broad.mit.edu	37	11	121420724	121420724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:121420724C>T	uc001pxx.2	+	15	2187	c.2107C>T	c.(2107-2109)CCG>TCG	p.P703S		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	703	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		TGTTCCAGATCCGGAATTTTC	0.438													16	12					0	0	0.006122	0	0
CRTAM	56253	broad.mit.edu	37	11	122720866	122720866	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:122720866C>T	uc001pyj.2	+	2	137	c.137C>T	c.(136-138)TCC>TTC	p.S46F		NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	46	Ig-like V-type.|Extracellular (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		AGGAAGAACTCCTCCCTCCAG	0.483													9	20					0	0	0.004482	0	0
C11orf63	79864	broad.mit.edu	37	11	122775031	122775031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:122775031G>A	uc001pym.2	+	3	1040	c.743G>A	c.(742-744)CGA>CAA	p.R248Q	C11orf63_uc001pyl.1_Missense_Mutation_p.R248Q	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	248										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GGCCCTCGGCGAAGGAAATCC	0.468													33	59					0	0	0.003271	0	0
TMEM225	338661	broad.mit.edu	37	11	123755222	123755222	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:123755222G>A	uc001pzi.2	-	2	511	c.303C>T	c.(301-303)TTC>TTT	p.F101F		NM_001013743	NP_001013765	Q6GV28	TM225_HUMAN	transmembrane protein 225	101	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	3						GGATGGTAGTGAAGAGTTGTA	0.428													4	1					0	0	0.000248	0	0
OR6T1	219874	broad.mit.edu	37	11	123813765	123813765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:123813765G>A	uc010sab.1	-	1	781	c.781C>T	c.(781-783)CGT>TGT	p.R261C		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	261	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TCTGACATACGAATGTAGAGA	0.517													18	46					0	0	0.001216	0	0
OR6T1	219874	broad.mit.edu	37	11	123813841	123813841	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:123813841C>T	uc010sab.1	-	1	705	c.705G>A	c.(703-705)AGG>AGA	p.R235R		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		AAAACGCTTTCCTTCGCTCAG	0.512													13	16					0	0	0.001368	0	0
OR8D1	283159	broad.mit.edu	37	11	124180455	124180455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:124180455C>T	uc010sag.1	-	1	208	c.208G>A	c.(208-210)GAT>AAT	p.D70N		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TAGCAGAAATCGACGAAGGAC	0.468													7	9					0	0	0.001984	0	0
OR8B4	283162	broad.mit.edu	37	11	124294684	124294684	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:124294684G>A	uc010sak.1	-	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		AGAATAGAAGGAAAAGAGGGA	0.468													8	11					0	0	0.004482	0	0
ROBO3	64221	broad.mit.edu	37	11	124740159	124740159	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:124740159C>T	uc001qbc.2	+	5	1057	c.865C>T	c.(865-867)CTA>TTA	p.L289L		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	289	Ig-like C2-type 3.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		CCCACCTCGTCTACGCTGGCG	0.587													11	23					0	0	0.000978	0	0
HEPACAM	220296	broad.mit.edu	37	11	124794652	124794652	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:124794652C>T	uc001qbk.2	-	2	805	c.399G>A	c.(397-399)GGG>GGA	p.G133G	HEPACAM_uc009zbj.2_5'Flank|HEPACAM_uc001qbl.1_Silent_p.G133G	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	133	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TGGTCTTCTCCCCAGTGAAGG	0.567													35	79					0	0	0.005524	0	0
DCPS	28960	broad.mit.edu	37	11	126176518	126176518	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:126176518G>A	uc001qdp.2	+	2	584	c.255G>A	c.(253-255)GAG>GAA	p.E85E		NM_014026	NP_054745	Q96C86	DCPS_HUMAN	mRNA decapping enzyme	85				E->A: Reduces decapping activity.	deadenylation-dependent decapping of nuclear-transcribed mRNA|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	exoribonuclease activity|protein binding				0	all_hematologic(175;0.145)	Breast(109;0.00156)|Lung NSC(97;0.00949)|all_lung(97;0.0101)|Medulloblastoma(222;0.0425)|all_neural(223;0.0604)		BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.08)		TGATCCTGGAGAAGACGCCAT	0.562													9	12					0	0	0.004482	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130275705	130275705	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:130275705G>A	uc001qgg.3	-	9	2776	c.2418C>T	c.(2416-2418)TTC>TTT	p.F806F	ADAMTS8_uc001qgf.2_Silent_p.F287F	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	806	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		TAGGAACAAAGAAGGTGTATT	0.577													42	86					0	0	0.003610	0	0
B3GAT1	27087	broad.mit.edu	37	11	134253616	134253616	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr11:134253616G>A	uc001qhq.2	-	4	840	c.579C>T	c.(577-579)TTC>TTT	p.F193F	B3GAT1_uc001qhr.2_Silent_p.F193F|B3GAT1_uc010scv.1_Silent_p.F206F	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	193	Lumenal (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		CGTCGTCGGCGAAGTAGACCA	0.692													4	5					0	0	0.000602	0	0
WNK1	65125	broad.mit.edu	37	12	1005522	1005522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:1005522C>T	uc001qio.3	+	24	6376	c.5869C>T	c.(5869-5871)CGT>TGT	p.R1957C	WNK1_uc001qip.3_Missense_Mutation_p.R1709C|WNK1_uc001qir.3_Missense_Mutation_p.R1130C	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1957					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CAAAGTGGGTCGTTTCTCTGT	0.468													48	18					0	0	0.003610	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1994221	1994221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:1994221C>T	uc001qjp.2	-	10	1321	c.1090G>A	c.(1090-1092)GAG>AAG	p.E364K	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Missense_Mutation_p.E280K	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	364	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		ACCATCAACTCCTCCACCAGC	0.542													67	15					0	0	0.003610	0	0
CACNA1C	775	broad.mit.edu	37	12	2566793	2566793	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:2566793G>A	uc009zdu.1	+	5	991	c.678G>A	c.(676-678)GGG>GGA	p.G226G	CACNA1C_uc009zdv.1_Silent_p.G226G|CACNA1C_uc001qkb.2_Silent_p.G226G|CACNA1C_uc001qkc.2_Silent_p.G226G|CACNA1C_uc001qke.2_Silent_p.G226G|CACNA1C_uc001qkf.2_Silent_p.G226G|CACNA1C_uc001qjz.2_Silent_p.G226G|CACNA1C_uc001qkd.2_Silent_p.G226G|CACNA1C_uc001qkg.2_Silent_p.G226G|CACNA1C_uc009zdw.1_Silent_p.G226G|CACNA1C_uc001qkh.2_Silent_p.G226G|CACNA1C_uc001qkl.2_Silent_p.G226G|CACNA1C_uc001qkn.2_Silent_p.G226G|CACNA1C_uc001qko.2_Silent_p.G226G|CACNA1C_uc001qkp.2_Silent_p.G226G|CACNA1C_uc001qkr.2_Silent_p.G226G|CACNA1C_uc001qku.2_Silent_p.G226G|CACNA1C_uc001qkq.2_Silent_p.G226G|CACNA1C_uc001qks.2_Silent_p.G226G|CACNA1C_uc001qkt.2_Silent_p.G226G|CACNA1C_uc001qka.1_5'UTR|CACNA1C_uc001qki.1_5'UTR|CACNA1C_uc001qkj.1_5'UTR|CACNA1C_uc001qkk.1_5'UTR|CACNA1C_uc001qkm.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	226	Extracellular (Potential).|I.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CTCTCGGAGGGAAAGGGGCCG	0.557													109	27					0	0	0.003610	0	0
CACNA1C	775	broad.mit.edu	37	12	2788691	2788691	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:2788691C>T	uc009zdu.1	+	44	5630	c.5317C>T	c.(5317-5319)CAG>TAG	p.Q1773*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.Q1722*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.Q1725*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.Q1744*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.Q1714*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.Q1733*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.Q1725*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.Q1744*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.Q1731*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.Q1766*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.Q1733*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.Q1773*|CACNA1C_uc001qkn.2_Nonsense_Mutation_p.Q1725*|CACNA1C_uc001qko.2_Nonsense_Mutation_p.Q1745*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.Q1725*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.Q1742*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.Q1725*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.Q1753*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.Q1725*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.Q1744*|CACNA1C_uc001qki.1_Nonsense_Mutation_p.Q1461*|CACNA1C_uc001qkj.1_Nonsense_Mutation_p.Q1461*|CACNA1C_uc001qkk.1_Nonsense_Mutation_p.Q1461*|CACNA1C_uc001qkm.1_Nonsense_Mutation_p.Q1450*|CACNA1C_uc010sea.1_Nonsense_Mutation_p.Q416*|uc001qkx.1_Intron|CACNA1C_uc001qky.1_Nonsense_Mutation_p.Q43*	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1773	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CTTCACCACTCAGCGCCCGCT	0.647													17	6					0	0	0.004990	0	0
KCNA5	3741	broad.mit.edu	37	12	5154958	5154958	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:5154958G>A	uc001qni.2	+	1	1874	c.1645G>A	c.(1645-1647)GAC>AAC	p.D549N		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	549						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GCCGGGGCTGGACAGAGGAGT	0.637													41	6					0	0	0.002222	0	0
NCAPD2	9918	broad.mit.edu	37	12	6636077	6636077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:6636077C>T	uc001qoo.2	+	22	2801	c.2755C>T	c.(2755-2757)CCC>TCC	p.P919S	NCAPD2_uc009zen.1_Missense_Mutation_p.P791S|NCAPD2_uc010sfd.1_Missense_Mutation_p.P874S	NM_014865	NP_055680	Q15021	CND1_HUMAN	non-SMC condensin I complex, subunit D2	919					cell division|mitotic chromosome condensation	condensin core heterodimer|cytoplasm	histone binding			ovary(2)|lung(1)|breast(1)|kidney(1)	5						CGCAATGCTCCCCACTTTCCT	0.562													35	26					0	0	0.006230	0	0
CDCA3	83461	broad.mit.edu	37	12	6958788	6958788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:6958788G>A	uc001qrg.2	-	4	613	c.485C>T	c.(484-486)CCT>CTT	p.P162L	CDCA3_uc001qre.2_Missense_Mutation_p.P162L|uc001qrf.1_5'Flank|USP5_uc001qri.3_5'Flank|USP5_uc001qrh.3_5'Flank	NM_031299	NP_112589	Q99618	CDCA3_HUMAN	cell division cycle associated 3	162					cell division|mitosis	cytosol					0						GCTGGCCACAGGGGTTTCTGT	0.522													101	17					0	0	0.003610	0	0
CLSTN3	9746	broad.mit.edu	37	12	7301721	7301721	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:7301721C>T	uc001qsr.2	+	13	2279	c.2001C>T	c.(1999-2001)TTC>TTT	p.F667F	CLSTN3_uc001qss.2_Silent_p.F679F	NM_014718	NP_055533	Q9BQT9	CSTN3_HUMAN	calsyntenin 3 precursor	667	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			large_intestine(1)	1						TCCCTTTGTTCCCTGATCTTC	0.567													14	14					0	0	0.004007	0	0
GDF3	9573	broad.mit.edu	37	12	7843051	7843051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:7843051G>A	uc001qte.2	-	2	554	c.518C>T	c.(517-519)CCA>CTA	p.P173L		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	173					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						TTGTGGCCATGGGACTGACCG	0.527													49	13					0	0	0.003610	0	0
KLRC3	3823	broad.mit.edu	37	12	10569303	10569303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:10569303G>A	uc001qyf.2	-	5	595	c.550C>T	c.(550-552)CCA>TCA	p.P184S	KLRC3_uc001qyh.2_Missense_Mutation_p.P184S|KLRC3_uc001qyi.1_Missense_Mutation_p.P184S	NM_002261	NP_002252	Q07444	NKG2E_HUMAN	killer cell lectin-like receptor subfamily C,	184	C-type lectin.|Extracellular (Potential).				cellular defense response	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|skin(1)	3						GTCACCCATGGATGATGACTG	0.299													22	1					0	0	0.007291	0	0
PRB2	653247	broad.mit.edu	37	12	11546785	11546785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:11546785C>T	uc010shk.1	-	3	262	c.227G>A	c.(226-228)GGA>GAA	p.G76E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGAGG	0.607													56	95					0	0	0.003610	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906432	13906432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:13906432G>A	uc001rbt.2	-	3	1008	c.829C>T	c.(829-831)CTC>TTC	p.L277F		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	277	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACAGAGATGAGCCCAGTGGGG	0.552													18	5					0	0	0.006122	0	0
RERGL	79785	broad.mit.edu	37	12	18234201	18234201	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:18234201T>A	uc001rdq.2	-	6	736	c.542A>T	c.(541-543)AAG>ATG	p.K181M	RERGL_uc001rdr.2_Missense_Mutation_p.K180M	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	181	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						GGGACGTCTCTTTTCTTTGAG	0.383													11	14					0	0	0.000673	0	0
PLCZ1	89869	broad.mit.edu	37	12	18849183	18849183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:18849183G>A	uc010sid.1	-	11	1383	c.1192C>T	c.(1192-1194)CAC>TAC	p.H398Y	PLCZ1_uc001rdv.3_Missense_Mutation_p.H294Y|PLCZ1_uc001rdw.3_Missense_Mutation_p.H139Y|PLCZ1_uc001rdu.1_Missense_Mutation_p.H180Y|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	398	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					TTCCTGGTGTGAAAAATAAAC	0.269													4	1					0	0	0.001168	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21028385	21028385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:21028385G>A	uc001rek.2	+	8	1070	c.944G>A	c.(943-945)GGA>GAA	p.G315E	SLCO1B3_uc001rel.2_Missense_Mutation_p.G315E|SLCO1B3_uc010sil.1_Missense_Mutation_p.G315E|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.G140E	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	315	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					ACCAACCAAGGAAAAAATGTT	0.299													12	11					0	0	0.000978	0	0
ABCC9	10060	broad.mit.edu	37	12	22089541	22089541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:22089541G>A	uc001rfi.1	-	1	88	c.68C>T	c.(67-69)TCC>TTC	p.S23F	ABCC9_uc001rfh.2_Missense_Mutation_p.S23F|ABCC9_uc001rfj.1_Missense_Mutation_p.S23F|ABCC9_uc001rfk.2_Missense_Mutation_p.S23F|ABCC9_uc001rfl.1_Missense_Mutation_p.S23F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	23	Extracellular (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CACAAAGCAGGAATTTTGTAG	0.338													30	4					0	0	0.001512	0	0
PKP2	5318	broad.mit.edu	37	12	33030950	33030950	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:33030950G>A	uc001rlj.3	-	3	979	c.864C>T	c.(862-864)TCC>TCT	p.S288S	PKP2_uc001rlk.3_Silent_p.S288S|PKP2_uc010skj.1_Silent_p.S288S	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	288					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					GATGCCAGGAGGACCTGGAAG	0.647													25	10					0	0	0.004656	0	0
LRRK2	120892	broad.mit.edu	37	12	40643653	40643653	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:40643653A>T	uc001rmg.3	+	8	985	c.864A>T	c.(862-864)TTA>TTT	p.L288F	LRRK2_uc001rmh.1_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	288					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TCCTGGTATTAAACGAAGTCC	0.383													27	8					0	0	0.007291	0	0
PDZRN4	29951	broad.mit.edu	37	12	41966347	41966347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:41966347G>A	uc010skn.1	+	10	1237	c.1169G>A	c.(1168-1170)GGG>GAG	p.G390E	PDZRN4_uc001rmq.3_Missense_Mutation_p.G331E|PDZRN4_uc009zjz.2_Missense_Mutation_p.G329E|PDZRN4_uc001rmr.2_Missense_Mutation_p.G216E	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	589							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				AGAGACCTGGGGCAGAGCCAA	0.498													26	2					0	0	0.003330	0	0
TMEM117	84216	broad.mit.edu	37	12	44770458	44770458	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:44770458T>C	uc001rod.2	+	7	915	c.849T>C	c.(847-849)ATT>ATC	p.I283I	TMEM117_uc001roe.2_Silent_p.I179I|TMEM117_uc009zkc.2_Intron	NM_032256	NP_115632	Q9H0C3	TM117_HUMAN	transmembrane protein 117	283						endoplasmic reticulum|integral to membrane					0	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.124)		AGTTCAAGATTCCTTTCTTCC	0.363													40	7					0	0	0.007835	0	0
WNT10B	7480	broad.mit.edu	37	12	49359897	49359897	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:49359897C>T	uc001rss.2	-	5	1497	c.1151G>A	c.(1150-1152)TGG>TAG	p.W384*	WNT10B_uc001rst.2_3'UTR	NM_003394	NP_003385	O00744	WN10B_HUMAN	wingless-type MMTV integration site family,	384					axis specification|bone trabecula formation|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|chondrocyte differentiation|female gonad development|hemopoietic stem cell proliferation|midbrain-hindbrain boundary development|myoblast cell differentiation involved in skeletal muscle regeneration|negative regulation of epithelial cell proliferation|negative regulation of fat cell differentiation|neuron differentiation|positive regulation of anagen|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cell proliferation|positive regulation of epithelial cell differentiation|positive regulation of osteoblast differentiation|protein stabilization|regulation of skeletal muscle tissue development|skeletal muscle fiber development|smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			skin(4)|lung(3)	7						CACATTCACCCACTCTGTAAC	0.567													31	6					0	0	0.002836	0	0
SLC4A8	9498	broad.mit.edu	37	12	51868969	51868969	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:51868969G>A	uc001rys.1	+	16	2329	c.2151G>A	c.(2149-2151)ACG>ACA	p.T717T	SLC4A8_uc001rym.2_Silent_p.T664T|SLC4A8_uc001ryn.2_Silent_p.T664T|SLC4A8_uc001ryo.2_Silent_p.T664T|SLC4A8_uc010snj.1_Silent_p.T744T|SLC4A8_uc001ryr.2_Silent_p.T717T|SLC4A8_uc010snk.1_Silent_p.T664T	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	717	Cytoplasmic (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		CGTTTAAGACGAGCCGTTATT	0.433													28	28					0	0	0.006999	0	0
SCN8A	6334	broad.mit.edu	37	12	52056817	52056817	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:52056817C>T	uc001ryw.2	+	2	394	c.216C>T	c.(214-216)ATC>ATT	p.I72I		NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	72					axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	ACGGGGACATCCCCCAAGGCC	0.557													42	32					0	0	0.001951	0	0
KRT6B	3854	broad.mit.edu	37	12	52842698	52842698	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:52842698G>A	uc001sak.2	-	6	1179	c.1131C>T	c.(1129-1131)ACC>ACT	p.T377T		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	377	Rod.|Coil 2.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		TCTCCTGCTTGGTGTTGCGCA	0.552													42	7					0	0	0.002222	0	0
KRT74	121391	broad.mit.edu	37	12	52967139	52967139	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:52967139C>T	uc001sap.1	-	1	471	c.423G>A	c.(421-423)CGG>CGA	p.R141R		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	141	Coil 1A.|Rod.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TGATCTGTTCCCGCTCCTGGG	0.597													54	12					0	0	0.003610	0	0
KRT78	196374	broad.mit.edu	37	12	53233725	53233725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:53233725C>T	uc001sbc.1	-	7	1155	c.1091G>A	c.(1090-1092)GGG>GAG	p.G364E		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	364	Coil 2.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						GGCCAGCTCCCCACGCTGCTC	0.617													6	10					0	0	0.001168	0	0
TENC1	23371	broad.mit.edu	37	12	53453362	53453362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:53453362C>T	uc001sbp.2	+	18	2072	c.1937C>T	c.(1936-1938)TCG>TTG	p.S646L	TENC1_uc001sbl.2_Missense_Mutation_p.S522L|TENC1_uc001sbn.2_Missense_Mutation_p.S656L|TENC1_uc001sbq.2_Missense_Mutation_p.S141L|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_Missense_Mutation_p.S141L|TENC1_uc001sbs.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	646					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						CTCTGCCGATCGCTGTCAGAG	0.662													43	10					0	0	0.001951	0	0
ATF7	11016	broad.mit.edu	37	12	53994769	53994769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:53994769G>A	uc001sdy.2	-	1	37	c.16C>T	c.(16-18)CCG>TCG	p.P6S	ATF7_uc010sok.1_RNA|ATF7_uc001sdz.2_Missense_Mutation_p.P6S|ATF7_uc010sol.1_Missense_Mutation_p.P6S|ATF7_uc001sea.3_Missense_Mutation_p.P6S|ATF7_uc001seb.3_Missense_Mutation_p.P6S	NM_001130059	NP_001123531	P17544	ATF7_HUMAN	activating transcription factor 7 isoform 1	6	Transactivation domain.				interspecies interaction between organisms	cytoplasm|nuclear periphery|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)	2						CACACAAACGGTCTGTCGTCT	0.418													8	19					0	0	0.000978	0	0
OR6C6	283365	broad.mit.edu	37	12	55688987	55688987	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:55688987G>A	uc010sph.1	-	1	30	c.30C>T	c.(28-30)TTC>TTT	p.F10F		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	10	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						CTAGGAGAATGAACTCTATTT	0.323													20	6					0	0	0.002299	0	0
OR6C1	390321	broad.mit.edu	37	12	55715062	55715062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:55715062C>T	uc010spi.1	+	1	679	c.679C>T	c.(679-681)CCT>TCT	p.P227S		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						TTTGAGAATTCCTTCTACTAG	0.378													40	11					0	0	0.006230	0	0
OR6C76	390326	broad.mit.edu	37	12	55820678	55820678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:55820678C>T	uc010spm.1	+	1	641	c.641C>T	c.(640-642)TCC>TTC	p.S214F		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	214	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTAATTCTCTCCTATACTTAC	0.378													9	3					0	0	0.006214	0	0
OR6C70	390327	broad.mit.edu	37	12	55863651	55863651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:55863651G>A	uc010spn.1	-	1	272	c.272C>T	c.(271-273)TCC>TTC	p.S91F		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACCATTACAGGAAATGGTCTT	0.383													19	3					0	0	0.006122	0	0
OR6C4	341418	broad.mit.edu	37	12	55945754	55945754	+	Silent	SNP	C	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:55945754C>G	uc010spp.1	+	1	744	c.744C>G	c.(742-744)CTC>CTG	p.L248L		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCATCTCCCTCTCTTATGGCA	0.433													29	12					0	0	0.002836	0	0
OR10P1	121130	broad.mit.edu	37	12	56031407	56031407	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:56031407C>T	uc010spq.1	+	1	732	c.732C>T	c.(730-732)TCC>TCT	p.S244S		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						CCTGCTCCTCCCATCTGCTCG	0.587													21	52					0	0	0.002299	0	0
GEFT	115557	broad.mit.edu	37	12	58009385	58009385	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:58009385C>T	uc001spb.2	+	12	1589	c.1129C>T	c.(1129-1131)CGA>TGA	p.R377*	GEFT_uc009zpy.2_Nonsense_Mutation_p.R416*|GEFT_uc001soz.1_Nonsense_Mutation_p.R225*|GEFT_uc001spa.2_Nonsense_Mutation_p.R271*|uc001spc.2_RNA|GEFT_uc001spd.2_Nonsense_Mutation_p.R82*	NM_182947	NP_891992	Q86VW2	ARHGP_HUMAN	RhoA/RAC/CDC42 exchange factor isoform 1	377	PH.				regulation of Rho protein signal transduction	cytosol|plasma membrane|sarcomere	Rho guanyl-nucleotide exchange factor activity				0	Melanoma(17;0.122)					TTCCCGAGGTCGAGAGAGGCG	0.552													50	8					0	0	0.003610	0	0
LRIG3	121227	broad.mit.edu	37	12	59271541	59271541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:59271541G>A	uc001sqr.2	-	15	2423	c.2177C>T	c.(2176-2178)CCT>CTT	p.P726L	LRIG3_uc009zqh.2_Missense_Mutation_p.P666L|LRIG3_uc010ssh.1_RNA	NM_153377	NP_700356	Q6UXM1	LRIG3_HUMAN	leucine-rich repeats and immunoglobulin-like	726	Ig-like C2-type 3.					integral to membrane				skin(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;1.17e-18)			GTTCAGTTTAGGGGGAGGGCT	0.488													42	9					0	0	0.001951	0	0
PTPRR	5801	broad.mit.edu	37	12	71094958	71094958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:71094958C>T	uc001swi.1	-	7	1569	c.1153G>A	c.(1153-1155)GAC>AAC	p.D385N	PTPRR_uc001swh.1_Missense_Mutation_p.D140N|PTPRR_uc009zrs.2_Missense_Mutation_p.D234N|PTPRR_uc010stq.1_Missense_Mutation_p.D273N|PTPRR_uc010str.1_Missense_Mutation_p.D234N	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	385	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		GCCACGACGTCCCTCAGCTGA	0.458													30	4					0	0	0.002445	0	0
PTPRR	5801	broad.mit.edu	37	12	71094984	71094984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:71094984C>T	uc001swi.1	-	7	1543	c.1127G>A	c.(1126-1128)CGA>CAA	p.R376Q	PTPRR_uc001swh.1_Missense_Mutation_p.R131Q|PTPRR_uc009zrs.2_Missense_Mutation_p.R225Q|PTPRR_uc010stq.1_Missense_Mutation_p.R264Q|PTPRR_uc010str.1_Missense_Mutation_p.R225Q	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	376	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TGTGAGAATTCGGCTGGCTGA	0.463													26	8					0	0	0.006320	0	0
PLEKHG7	440107	broad.mit.edu	37	12	93150150	93150150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:93150150G>A	uc001tcj.2	+	8	913	c.683G>A	c.(682-684)GGA>GAA	p.G228E		NM_001004330	NP_001004330	Q6ZR37	PKHG7_HUMAN	pleckstrin homology domain containing, family G	228	PH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(1)	1						CTCTATGAAGGAAAATTAACT	0.383													28	7					0	0	0.001786	0	0
TMCC3	57458	broad.mit.edu	37	12	94976115	94976115	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:94976115A>T	uc001tdj.2	-	2	396	c.278T>A	c.(277-279)GTT>GAT	p.V93D	TMCC3_uc001tdi.2_Missense_Mutation_p.V62D	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	93						integral to membrane				ovary(1)|skin(1)	2						ATACTCCGCAACATTCCCATC	0.448													79	16					0	0	0.003610	0	0
C12orf63	374467	broad.mit.edu	37	12	97137822	97137822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:97137822G>A	uc001tet.1	+	22	2935	c.2857G>A	c.(2857-2859)GAA>AAA	p.E953K		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	953								p.E953K(1)		skin(6)|ovary(1)	7						AGAAACAATTGAATTTCGTTC	0.308													18	7					0	0	0.006122	0	0
GOLGA2B	55592	broad.mit.edu	37	12	100550946	100550946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:100550946C>T	uc001tgs.2	-	5	823	c.379G>A	c.(379-381)GAA>AAA	p.E127K	GOLGA2B_uc001tgt.2_RNA|GOLGA2B_uc001tgu.2_Missense_Mutation_p.E127K|uc001tgv.1_5'Flank|uc001tgx.2_5'Flank	NM_017600	NP_060070			golgi autoantigen, golgin subfamily a, 2-like 1												0						GCCCTACCTTCACCTCTCCCT	0.627													16	8					0	0	0.004007	0	0
SLC17A8	246213	broad.mit.edu	37	12	100806574	100806574	+	Silent	SNP	C	T	T	rs138338989		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:100806574C>T	uc010svi.1	+	10	1526	c.1213C>T	c.(1213-1215)CTG>TTG	p.L405L	SLC17A8_uc009ztx.2_Silent_p.L355L	NM_139319	NP_647480	Q8NDX2	VGLU3_HUMAN	solute carrier family 17 (sodium-dependent	405	Helical; (Potential).				neurotransmitter transport|sensory perception of sound|sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)	3						AACCTTACTCCTGGTGGTTGG	0.423													65	15					0	0	0.003610	0	0
ANO4	121601	broad.mit.edu	37	12	101413904	101413904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:101413904G>A	uc010svm.1	+	9	1399	c.827G>A	c.(826-828)GGA>GAA	p.G276E	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.G241E|ANO4_uc001thx.2_Missense_Mutation_p.G276E	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	276	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TATGAAGAAGGAAAAAACAAG	0.318										HNSCC(74;0.22)			11	5					0	0	0.000673	0	0
ANO4	121601	broad.mit.edu	37	12	101477506	101477506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:101477506G>A	uc010svm.1	+	16	2018	c.1446G>A	c.(1444-1446)ATG>ATA	p.M482I	ANO4_uc001thw.2_Missense_Mutation_p.M447I|ANO4_uc001thx.2_Missense_Mutation_p.M482I|ANO4_uc001thy.2_Intron	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	482	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAGAGCGGATGAATCCAATTT	0.383										HNSCC(74;0.22)			39	4					0	0	0.006230	0	0
ANO4	121601	broad.mit.edu	37	12	101493435	101493435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:101493435G>A	uc010svm.1	+	22	2658	c.2086G>A	c.(2086-2088)GAA>AAA	p.E696K	ANO4_uc001thw.2_Missense_Mutation_p.E661K|ANO4_uc001thx.2_Missense_Mutation_p.E696K|ANO4_uc001thy.2_Missense_Mutation_p.E216K	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	696	Cytoplasmic (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CCCACAATGGGAAAAGGACTA	0.343										HNSCC(74;0.22)			25	7					0	0	0.003954	0	0
HSP90B1	7184	broad.mit.edu	37	12	104326097	104326097	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:104326097A>G	uc001tkb.1	+	3	300	c.195A>G	c.(193-195)CAA>CAG	p.Q65Q	HSP90B1_uc010swg.1_Intron|HSP90B1_uc009zui.1_Silent_p.Q65Q|LOC253724_uc010swf.1_5'Flank|LOC253724_uc009zuh.2_5'Flank	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	65					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	ATGCATCACAAATAAGAGAAC	0.348													13	6					0	0	0.001368	0	0
BTBD11	121551	broad.mit.edu	37	12	107713182	107713183	+	Missense_Mutation	DNP	CA	AG	AG			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:107713182_107713183CA>AG	uc001tmk.1	+	1	986_987	c.465_466CA>AG	c.(463-468)GCCAAG>GCAGAG	p.K156E	BTBD11_uc009zut.1_Missense_Mutation_p.K156E|BTBD11_uc001tmj.2_Missense_Mutation_p.K156E	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	156						integral to membrane	DNA binding			skin(2)|ovary(1)	3						TGCGCTTCGCCAAGTGCACCAA	0.688													4	2					0	0	0.004672	0	0
MMAB	326625	broad.mit.edu	37	12	109999605	109999605	+	Missense_Mutation	SNP	G	A	A	rs138708209		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:109999605G>A	uc001tou.2	-	5	474	c.401C>T	c.(400-402)TCG>TTG	p.S134L	MMAB_uc001tov.2_RNA|MMAB_uc001tow.2_RNA|MMAB_uc010sxq.1_Missense_Mutation_p.S43L|MMAB_uc001tox.2_Missense_Mutation_p.S82L	NM_052845	NP_443077	Q96EY8	MMAB_HUMAN	cob(I)alamin adenosyltransferase precursor	134					cobalamin biosynthetic process	mitochondrion	ATP binding|cob(I)yrinic acid a,c-diamide adenosyltransferase activity				0					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CTCCCGGGCCGAGGAGCATGG	0.592													10	4					0	0	0.000673	0	0
ACAD10	80724	broad.mit.edu	37	12	112174755	112174755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:112174755C>T	uc001tsq.2	+	12	1861	c.1661C>T	c.(1660-1662)TCC>TTC	p.S554F	ACAD10_uc001tsp.2_Missense_Mutation_p.S554F|ACAD10_uc009zvx.2_Missense_Mutation_p.S585F|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	554							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						ATGGCTTTTTCCTTTTTCCGT	0.527													50	8					0	0	0.003610	0	0
RASAL1	8437	broad.mit.edu	37	12	113537768	113537768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:113537768C>T	uc001tum.1	-	22	2674	c.2381G>A	c.(2380-2382)CGA>CAA	p.R794Q	RASAL1_uc010syp.1_Missense_Mutation_p.R795Q|RASAL1_uc001tul.2_Missense_Mutation_p.R766Q|RASAL1_uc001tun.1_Missense_Mutation_p.R796Q	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	794					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						CGCCTTCCCTCGCTCCTGCTG	0.672													38	41					0	0	0.002222	0	0
RASAL1	8437	broad.mit.edu	37	12	113543632	113543632	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:113543632G>A	uc001tum.1	-	17	2007	c.1714C>T	c.(1714-1716)CTG>TTG	p.L572L	RASAL1_uc010syp.1_Silent_p.L573L|RASAL1_uc001tul.2_Silent_p.L572L|RASAL1_uc001tun.1_Silent_p.L574L|RASAL1_uc010syq.1_Silent_p.L573L|RASAL1_uc001tuo.3_Silent_p.L573L	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	572	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						CGCTTCAGCAGATAGCCTTCT	0.632													29	69					0	0	0.001786	0	0
TBX5	6910	broad.mit.edu	37	12	114804111	114804111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:114804111G>A	uc001tvo.2	-	8	1336	c.841C>T	c.(841-843)CTC>TTC	p.L281F	TBX5_uc001tvp.2_Missense_Mutation_p.L281F|TBX5_uc001tvq.2_Missense_Mutation_p.L231F|TBX5_uc010syv.1_Missense_Mutation_p.L281F	NM_181486	NP_852259	Q99593	TBX5_HUMAN	T-box 5 isoform 1	281					cardiac left ventricle formation|cell migration involved in coronary vasculogenesis|cell-cell signaling|embryonic arm morphogenesis|induction of apoptosis|negative regulation of cardiac muscle cell proliferation|negative regulation of cell migration|negative regulation of epithelial to mesenchymal transition|pericardium development|positive regulation of cardioblast differentiation|positive regulation of transcription from RNA polymerase II promoter|ventricular septum development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(6)|pancreas(1)|skin(1)	8	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0893)		GAGGTGGAGAGAGCTCGAGAC	0.557													29	29					0	0	0.001512	0	0
NOS1	4842	broad.mit.edu	37	12	117718653	117718653	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:117718653G>A	uc001twm.1	-	8	2087	c.1401C>T	c.(1399-1401)TTC>TTT	p.F467F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	467					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TCCTCTGGGGGAATATGGTGA	0.627													17	5					0	0	0.004990	0	0
KSR2	283455	broad.mit.edu	37	12	117909112	117909112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:117909112C>T	uc001two.2	-	18	2564	c.2509G>A	c.(2509-2511)GAA>AAA	p.E837K		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	866	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GCGTGGAGTTCATACCAGATT	0.517													19	5					0	0	0.004656	0	0
SRRM4	84530	broad.mit.edu	37	12	119540113	119540113	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:119540113C>T	uc001txa.1	+	2	496	c.204C>T	c.(202-204)GCC>GCT	p.A68A		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	68					cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						AGCATCTGGCCACCGAGCCCT	0.542													13	5					0	0	0.002450	0	0
KDM2B	84678	broad.mit.edu	37	12	121880320	121880320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:121880320G>A	uc001uat.2	-	19	3028	c.2924C>T	c.(2923-2925)TCG>TTG	p.S975L	KDM2B_uc001uaq.2_Missense_Mutation_p.S415L|KDM2B_uc010szy.1_Missense_Mutation_p.S415L|KDM2B_uc001uar.2_Missense_Mutation_p.S566L|KDM2B_uc001uas.2_Missense_Mutation_p.S906L|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.S223L|KDM2B_uc010szx.1_Missense_Mutation_p.S223L|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	975					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CTCAGGCTCCGACTTGATGGG	0.567													24	7					0	0	0.002780	0	0
GPR81	27198	broad.mit.edu	37	12	123214855	123214855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:123214855C>T	uc001ucz.2	-	1	275	c.32G>A	c.(31-33)GGG>GAG	p.G11E	GPR81_uc001ucw.1_RNA	NM_032554	NP_115943	Q9BXC0	HCAR1_HUMAN	G protein-coupled receptor 81	11	Extracellular (Potential).				response to estradiol stimulus	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.14e-05)|Epithelial(86;3.25e-05)|BRCA - Breast invasive adenocarcinoma(302;0.197)		GATGGTGTCCCCCTCGATGCG	0.617													14	5					0	0	0.004007	0	0
DNAH10	196385	broad.mit.edu	37	12	124330297	124330297	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:124330297C>T	uc001uft.3	+	30	5182	c.5157C>T	c.(5155-5157)ATC>ATT	p.I1719I		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1719	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		ACCGGCAGATCGATGAGTTGG	0.493													47	3					0	0	0.002852	0	0
DNAH10	196385	broad.mit.edu	37	12	124418052	124418052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:124418052G>A	uc001uft.3	+	76	13142	c.13117G>A	c.(13117-13119)GGA>AGA	p.G4373R	DNAH10_uc001ufu.3_Missense_Mutation_p.G286R	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	4373					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGAGCGGGCGGGACAAGGTAC	0.577													31	17					0	0	0.002836	0	0
NCOR2	9612	broad.mit.edu	37	12	124829403	124829403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:124829403G>A	uc010tba.1	-	32	4595	c.4478C>T	c.(4477-4479)CCA>CTA	p.P1493L	NCOR2_uc010tay.1_Missense_Mutation_p.P1492L|NCOR2_uc010taz.1_Missense_Mutation_p.P1476L|NCOR2_uc010tbb.1_Missense_Mutation_p.P1485L|NCOR2_uc010tbc.1_Missense_Mutation_p.P1475L	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1493					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GTGCACGGGTGGGAACGTCCG	0.697													3	3					0	0	0.000248	0	0
NCOR2	9612	broad.mit.edu	37	12	124841213	124841213	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:124841213G>A	uc010tba.1	-	23	3357	c.3240C>T	c.(3238-3240)CCC>CCT	p.P1080P	NCOR2_uc010tay.1_Silent_p.P1079P|NCOR2_uc010taz.1_Silent_p.P1063P|NCOR2_uc010tbb.1_Silent_p.P1072P|NCOR2_uc010tbc.1_Silent_p.P1062P|NCOR2_uc001ugj.1_Silent_p.P1080P	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1080					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		AGAAGGCTGAGGGGTCCGGGG	0.652													31	9					0	0	0.004878	0	0
NCOR2	9612	broad.mit.edu	37	12	124979739	124979740	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:124979739_124979740GG>AA	uc010tba.1	-	1	175_176	c.58_59CC>TT	c.(58-60)CCG>TTG	p.P20L	NCOR2_uc010tay.1_Missense_Mutation_p.P20L|NCOR2_uc010taz.1_Missense_Mutation_p.P20L|NCOR2_uc010tbb.1_Missense_Mutation_p.P20L|NCOR2_uc010tbc.1_Missense_Mutation_p.P20L|NCOR2_uc001ugj.1_Missense_Mutation_p.P20L|NCOR2_uc001ugk.1_Missense_Mutation_p.P20L	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	20					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCTGTGGGGCGGGTAGCGGGGC	0.653													12	18					0	0	0.004672	0	0
MMP17	4326	broad.mit.edu	37	12	132334600	132334600	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr12:132334600C>T	uc001ujc.1	+	9	1557	c.1458C>T	c.(1456-1458)TCC>TCT	p.S486S	MMP17_uc001ujd.1_Silent_p.S402S	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	486	Hemopexin-like 4.				proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		TGCGCTGGTCCGACGGTGAGT	0.677													8	4					0	0	0.003080	0	0
ZMYM5	9205	broad.mit.edu	37	13	20411946	20411946	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:20411946C>T	uc010tcn.1	-	6	1153	c.888G>A	c.(886-888)AAG>AAA	p.K296K	ZMYM5_uc001umm.1_Silent_p.K120K|ZMYM5_uc001umn.2_Silent_p.K296K|ZMYM5_uc001umo.2_Missense_Mutation_p.R201K	NM_001142684	NP_001136156	Q9UJ78	ZMYM5_HUMAN	zinc finger protein 237 isoform 3	296	MYM-type 1.					nucleus	zinc ion binding				0		all_cancers(29;2.96e-22)|all_epithelial(30;3.76e-20)|all_lung(29;4.38e-20)|Lung NSC(5;5.8e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.61e-05)|Epithelial(112;4.89e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00171)|Lung(94;0.00942)|LUSC - Lung squamous cell carcinoma(192;0.0431)		CATTAGCCTTCTTTGTAGATG	0.303													11	29					0	0	0.001855	0	0
GJB2	2706	broad.mit.edu	37	13	20763627	20763627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:20763627G>A	uc001umy.2	-	2	309	c.94C>T	c.(94-96)CGC>TGC	p.R32C		NM_004004	NP_003995	P29033	CXB2_HUMAN	gap junction protein beta 2	32	Helical; (Potential).		R -> L.|R -> H (in DFNB1A).		cell-cell signaling|cellular membrane organization|gap junction assembly|sensory perception of sound|transport	connexon complex|ER-Golgi intermediate compartment|integral to membrane					0		all_cancers(29;3.95e-22)|all_epithelial(30;2.36e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;0.000435)|Epithelial(112;0.000722)|OV - Ovarian serous cystadenocarcinoma(117;0.0096)|Lung(94;0.0236)|LUSC - Lung squamous cell carcinoma(192;0.0738)		ATCATAATGCGAAAAATGAAG	0.542									Keratitis_Ichthyosis_and_Deafness_syndrome		OREG0022282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	58					0	0	0.007413	0	0
TPTE2P1	646405	broad.mit.edu	37	13	25525607	25525607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:25525607C>T	uc010tdh.1	-	2	284	c.145G>A	c.(145-147)GAA>AAA	p.E49K	TPTE2P1_uc001upx.3_RNA	NR_026730				RecName: Full=C2 tensin-type domain-containing protein ENSP00000371290;												0						TTATCCAATTCATTTCTTGGT	0.363													3	3					0	0	0.000248	0	0
NUPL1	9818	broad.mit.edu	37	13	25882031	25882031	+	Silent	SNP	C	T	T	rs143556359	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:25882031C>T	uc001uqi.2	+	2	441	c.195C>T	c.(193-195)ACC>ACT	p.T65T	NUPL1_uc001uqg.1_Silent_p.T65T|NUPL1_uc001uqj.2_Silent_p.T65T	NM_014089	NP_054808	Q9BVL2	NUPL1_HUMAN	nucleoporin like 1 isoform a	65	14 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore					0		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.0092)|Epithelial(112;0.0477)|OV - Ovarian serous cystadenocarcinoma(117;0.165)|GBM - Glioblastoma multiforme(144;0.244)		GTTTTGGAACCGGGCTCTTTG	0.448													32	27					0	0	0.002096	0	0
ATP8A2	51761	broad.mit.edu	37	13	26129151	26129151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:26129151G>A	uc001uqk.2	+	13	1350	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E	ATP8A2_uc010tdi.1_Missense_Mutation_p.G363E|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc001uql.1_Missense_Mutation_p.G363E	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	363	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		TATTATATAGGAAATGACACT	0.403													15	52					0	0	0.004990	0	0
GPR12	2835	broad.mit.edu	37	13	27332999	27332999	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:27332999G>A	uc010aal.2	-	2	1188	c.966C>T	c.(964-966)TCC>TCT	p.S322S	GPR12_uc010tdl.1_Silent_p.S163S	NM_005288	NP_005279	P47775	GPR12_HUMAN	G protein-coupled receptor 12	322	Cytoplasmic (Potential).					integral to plasma membrane					0	Colorectal(5;5.77e-05)	Breast(139;0.198)		Epithelial(112;9.37e-07)|OV - Ovarian serous cystadenocarcinoma(117;1.16e-06)|all cancers(112;8.31e-06)|GBM - Glioblastoma multiforme(144;0.00121)|Lung(94;0.111)|LUSC - Lung squamous cell carcinoma(192;0.184)		GGGCGAGACTGGACGGGATGC	0.547													31	20					0	0	0.002096	0	0
GPR12	2835	broad.mit.edu	37	13	27333418	27333418	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:27333418G>A	uc010aal.2	-	2	769	c.547C>T	c.(547-549)CGA>TGA	p.R183*	GPR12_uc010tdl.1_Nonsense_Mutation_p.R24*	NM_005288	NP_005279	P47775	GPR12_HUMAN	G protein-coupled receptor 12	183	Extracellular (Potential).					integral to plasma membrane					0	Colorectal(5;5.77e-05)	Breast(139;0.198)		Epithelial(112;9.37e-07)|OV - Ovarian serous cystadenocarcinoma(117;1.16e-06)|all cancers(112;8.31e-06)|GBM - Glioblastoma multiforme(144;0.00121)|Lung(94;0.111)|LUSC - Lung squamous cell carcinoma(192;0.184)		GACTCGTCTCGGAGGCAGTTC	0.597													11	25					0	0	0.000673	0	0
FLT3	2322	broad.mit.edu	37	13	28622446	28622446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:28622446G>A	uc001urw.2	-	9	1253	c.1171C>T	c.(1171-1173)CCT>TCT	p.P391S	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.P391S	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	391	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	TGCTCACAAGGAAATGATTTT	0.393			Mis|O		AML|ALL								36	32					0	0	0.006999	0	0
FLT1	2321	broad.mit.edu	37	13	28959163	28959163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:28959163C>T	uc001usb.3	-	14	2260	c.1975G>A	c.(1975-1977)GAA>AAA	p.E659K	FLT1_uc010aar.1_Missense_Mutation_p.E659K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	659	Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TATGGTGCTTCCTGATCTAGT	0.428													17	64					0	0	0.001523	0	0
MTUS2	23281	broad.mit.edu	37	13	29608082	29608082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:29608082C>T	uc001usl.3	+	2	2354	c.2296C>T	c.(2296-2298)CCT>TCT	p.P766S		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	756	Mediates interaction with MAPRE1.					cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TTATGAAGTCCCTCCAACTTT	0.448													5	16					0	0	0.001168	0	0
FRY	10129	broad.mit.edu	37	13	32811687	32811687	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:32811687C>T	uc001utx.2	+	44	6478	c.5982C>T	c.(5980-5982)TCC>TCT	p.S1994S	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1994					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TCGACCGATCCTCTGACCCAC	0.557													8	21					0	0	0.003080	0	0
NBEA	26960	broad.mit.edu	37	13	35615076	35615076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:35615076G>A	uc001uvb.2	+	3	507	c.301G>A	c.(301-303)GGT>AGT	p.G101S		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	101						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCAGCTGGTTGGTGGAGAATT	0.368													24	35					0	0	0.004656	0	0
POSTN	10631	broad.mit.edu	37	13	38166278	38166279	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:38166278_38166279GG>AA	uc001uwo.3	-	3	359_360	c.241_242CC>TT	c.(241-243)CCT>TTT	p.P81F	POSTN_uc001uwp.3_Missense_Mutation_p.P81F|POSTN_uc001uwr.2_Missense_Mutation_p.P81F|POSTN_uc001uwq.2_Missense_Mutation_p.P81F|POSTN_uc010teu.1_Missense_Mutation_p.P81F|POSTN_uc010tev.1_Missense_Mutation_p.P81F|POSTN_uc010tew.1_Missense_Mutation_p.P81F|POSTN_uc010tex.1_5'UTR	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	81	EMI.				cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		CATATAACCAGGGCAACATTCA	0.297													5	26					0	0	0.004672	0	0
TRPC4	7223	broad.mit.edu	37	13	38320265	38320265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:38320265C>T	uc001uws.2	-	3	941	c.706G>A	c.(706-708)GAA>AAA	p.E236K	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.E236K|TRPC4_uc010tey.1_Missense_Mutation_p.E236K|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Missense_Mutation_p.E236K|TRPC4_uc010aby.2_Missense_Mutation_p.E236K	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	236	Potential.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GACTTGAATTCATTTTCCACC	0.458													16	24					0	0	0.006122	0	0
DGKH	160851	broad.mit.edu	37	13	42733442	42733442	+	Silent	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:42733442A>T	uc001uyl.1	+	6	684	c.663A>T	c.(661-663)GCA>GCT	p.A221A	DGKH_uc010tfh.1_Silent_p.A221A|DGKH_uc001uym.1_Silent_p.A221A|DGKH_uc010tfi.1_Intron|DGKH_uc010tfj.1_Silent_p.A76A|DGKH_uc001uyn.1_RNA|DGKH_uc001uyo.1_Silent_p.A76A|DGKH_uc001uyp.2_RNA	NM_178009	NP_821077	Q86XP1	DGKH_HUMAN	diacylglycerol kinase, eta isoform 2	221	Phorbol-ester/DAG-type 1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		CAGTGAGAGCAACAAATAACT	0.403													4	7					0	0	0.000248	0	0
ENOX1	55068	broad.mit.edu	37	13	43934166	43934166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:43934166C>T	uc001uza.3	-	7	710	c.410G>A	c.(409-411)CGA>CAA	p.R137Q	ENOX1_uc001uzb.3_Missense_Mutation_p.R137Q|ENOX1_uc001uzc.3_Missense_Mutation_p.R137Q|ENOX1_uc010tfm.1_5'UTR	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	137	Pro-rich.				electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		CCCAGGAGGTCGTTCTCTTGT	0.393													12	25					0	0	0.001855	0	0
LOC220429	220429	broad.mit.edu	37	13	50467034	50467034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:50467034C>T	uc001vdk.2	+	1	2490	c.2308C>T	c.(2308-2310)CCC>TCC	p.P770S		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						TGGATTTTCCCCCCCTACCCG	0.517													9	17					0	0	0.004482	0	0
PCDH17	27253	broad.mit.edu	37	13	58208265	58208265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:58208265C>T	uc001vhq.1	+	1	2477	c.1585C>T	c.(1585-1587)CCC>TCC	p.P529S	PCDH17_uc010aec.1_Missense_Mutation_p.P529S	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	529	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GTCTGTGAATCCCACGAACGG	0.597													13	27					0	0	0.001368	0	0
DACH1	1602	broad.mit.edu	37	13	72440848	72440848	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:72440848G>A	uc010thn.1	-	1	483	c.60C>T	c.(58-60)ATC>ATT	p.I20I	DACH1_uc010tho.1_Silent_p.I20I|DACH1_uc010thp.1_Silent_p.I20I	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	20					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		CAGACGTGGAGATTGGGGGTT	0.637													10	12					0	0	0.000673	0	0
DIS3	22894	broad.mit.edu	37	13	73335651	73335651	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:73335651G>A	uc001vix.3	-	19	2894	c.2520C>T	c.(2518-2520)TTC>TTT	p.F840F	DIS3_uc001viy.3_Silent_p.F810F|DIS3_uc001viz.2_RNA	NM_014953	NP_055768	Q9Y2L1	RRP44_HUMAN	DIS3 mitotic control isoform a	840					CUT catabolic process|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA catabolic process|rRNA processing	cytosol|exosome (RNase complex)|nucleolus|nucleoplasm	3'-5'-exoribonuclease activity|endonuclease activity|guanyl-nucleotide exchange factor activity|protein binding|RNA binding			central_nervous_system(1)	1		Breast(118;0.0074)|Acute lymphoblastic leukemia(28;0.0195)		GBM - Glioblastoma multiforme(99;0.000181)		CTTTGCTTTTGAAGAATAACT	0.224										Multiple Myeloma(4;0.011)			9	31					0	0	0.004482	0	0
KLF12	11278	broad.mit.edu	37	13	74420439	74420439	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:74420439G>A	uc001vjf.2	-	4	417	c.195C>T	c.(193-195)CCC>CCT	p.P65P	KLF12_uc010aeq.2_Silent_p.P65P|KLF12_uc001vjg.3_Silent_p.P65P	NM_007249	NP_009180	Q9Y4X4	KLF12_HUMAN	Kruppel-like factor 12	65					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Prostate(6;0.00217)|Breast(118;0.0838)		GBM - Glioblastoma multiforme(99;0.00677)		AGTCCTCCGGGGGCTCCCCTT	0.473													30	32					0	0	0.002445	0	0
MYCBP2	23077	broad.mit.edu	37	13	77751993	77751993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:77751993G>A	uc001vkf.2	-	36	5207	c.5116C>T	c.(5116-5118)CCT>TCT	p.P1706S	MYCBP2_uc010aev.2_Missense_Mutation_p.P1110S	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1706					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		ATTGCATCAGGGGACCCGTTC	0.418													11	13					0	0	0.000673	0	0
SLAIN1	122060	broad.mit.edu	37	13	78320734	78320735	+	Missense_Mutation	DNP	AT	CG	CG			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:78320734_78320735AT>CG	uc010thy.1	+	4	553_554	c.510_511AT>CG	c.(508-513)ACATGT>ACCGGT	p.C171G	SLAIN1_uc001vkk.1_Missense_Mutation_p.C94G|SLAIN1_uc001vkl.1_Missense_Mutation_p.C50G|SLAIN1_uc010thz.1_Missense_Mutation_p.C49G|SLAIN1_uc010aex.1_Intron|SLAIN1_uc010aey.1_Intron|SLAIN1_uc001vkm.2_Missense_Mutation_p.C50G	NM_144595	NP_653196	Q8ND83	SLAI1_HUMAN	SLAIN motif family, member 1 B	313										ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0853)		AAAAAGGGACATGTAGTGATCA	0.406													11	13					0	0	0.004672	0	0
MIR622	693207	broad.mit.edu	37	13	90883465	90883465	+	RNA	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:90883465A>G	hsa-mir-622|MI0003636	+			c.30A>G																				0						TGGTCTCAGCAGATTGAGGAG	0.532													11	18					0	0	0.001855	0	0
GPC5	2262	broad.mit.edu	37	13	92345938	92345938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:92345938C>T	uc010tif.1	+	3	1189	c.823C>T	c.(823-825)CTC>TTC	p.L275F		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	275						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				GGGATACTGCCTCAATGTCAT	0.552													22	25					0	0	0.003330	0	0
DZIP1	22873	broad.mit.edu	37	13	96293735	96293735	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:96293735G>A	uc001vmk.2	-	5	1263	c.411C>T	c.(409-411)TTC>TTT	p.F137F	DZIP1_uc001vml.2_Silent_p.F137F|DZIP1_uc001vmn.2_Silent_p.F126F	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	137					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			GCGAGGTGAGGAACTCTTGTG	0.632													20	9					0	0	0.007413	0	0
MBNL2	10150	broad.mit.edu	37	13	98009744	98009744	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:98009744C>T	uc010aft.2	+	6	1629	c.813C>T	c.(811-813)CCC>CCT	p.P271P	MBNL2_uc001vmz.2_Silent_p.P271P|MBNL2_uc001vna.2_Silent_p.P271P|MBNL2_uc001vnb.2_RNA|MBNL2_uc010tij.1_Silent_p.P116P|MBNL2_uc001vnc.2_Silent_p.P4P	NM_144778	NP_659002	Q5VZF2	MBNL2_HUMAN	muscleblind-like 2 isoform 1	271					mRNA processing|regulation of RNA splicing|RNA splicing	cytoplasm|nucleus	RNA binding|zinc ion binding				0	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.218)			AGGCCTTTCCCCCTGGTGCTC	0.428													17	12					0	0	0.006122	0	0
IPO5	3843	broad.mit.edu	37	13	98671844	98671844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:98671844C>T	uc001vne.2	+	27	3080	c.2900C>T	c.(2899-2901)CCC>CTC	p.P967L		NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	949	HEAT 6.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						GAAGCACTTCCCCTGCTGGTA	0.353													9	2					0	0	0.004482	0	0
SLC10A2	6555	broad.mit.edu	37	13	103703668	103703668	+	Missense_Mutation	SNP	G	A	A	rs143059000		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:103703668G>A	uc001vpy.3	-	4	1297	c.700C>T	c.(700-702)CCT>TCT	p.P234S		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	234	Helical; (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CCCGCCACAGGAAATATTGTT	0.463													18	6					0	0	0.002780	0	0
ATP11A	23250	broad.mit.edu	37	13	113485772	113485772	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:113485772C>T	uc001vsi.3	+	13	1393	c.1305C>T	c.(1303-1305)GTC>GTT	p.V435V	ATP11A_uc001vsj.3_Silent_p.V435V|ATP11A_uc001vsm.1_Silent_p.V311V	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	435	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				AAGGCCATGTCTACGTGCCCC	0.587													15	4					0	0	0.003163	0	0
GRK1	6011	broad.mit.edu	37	13	114322232	114322232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr13:114322232G>A	uc010tkf.1	+	1	639	c.531G>A	c.(529-531)TGG>TGA	p.W177*		NM_002929	NP_002920	Q15835	RK_HUMAN	rhodopsin kinase precursor	177	N-terminal.				regulation of G-protein coupled receptor protein signaling pathway|rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|rhodopsin kinase activity|signal transducer activity			ovary(2)	2	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.00696)|all_epithelial(44;0.00347)|all_lung(25;0.0221)|Breast(118;0.0411)|Lung NSC(25;0.0839)	all cancers(43;0.234)			TCCTGCAGTGGAAGTGGCTGG	0.652													3	3					0	0	0.004672	0	0
OR4K5	79317	broad.mit.edu	37	14	20389662	20389662	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:20389662G>A	uc010tkw.1	+	1	897	c.897G>A	c.(895-897)AGG>AGA	p.R299R		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGCCGTAAGGAAAATTGTGA	0.383													22	48					0	0	0.003330	0	0
OR4K1	79544	broad.mit.edu	37	14	20404348	20404348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:20404348G>A	uc001vwj.1	+	1	523	c.523G>A	c.(523-525)GAT>AAT	p.D175N		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CAATGAGGTGGATAGCTTCTT	0.453													26	55					0	0	0.002096	0	0
OR4K14	122740	broad.mit.edu	37	14	20483167	20483167	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:20483167G>A	uc010tky.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TCCCCAGCAGGAAGTACATAG	0.468													9	14					0	0	0.004482	0	0
OR11G2	390439	broad.mit.edu	37	14	20666099	20666099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:20666099C>T	uc010tlb.1	+	1	605	c.605C>T	c.(604-606)TCC>TTC	p.S202F		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	202	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GTCAACATCTCCCAAATGTCC	0.448													15	37					0	0	0.003163	0	0
OR11H4	390442	broad.mit.edu	37	14	20711184	20711184	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:20711184C>T	uc010tld.1	+	1	234	c.234C>T	c.(232-234)TTC>TTT	p.F78F		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	78	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		ATTTTGCCTTCCTTGAGATCT	0.468													68	81					0	0	0.003610	0	0
TEP1	7011	broad.mit.edu	37	14	20845516	20845516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:20845516G>A	uc001vxe.2	-	41	6051	c.6011C>T	c.(6010-6012)TCC>TTC	p.S2004F	TEP1_uc010ahk.2_Missense_Mutation_p.S1347F|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.S1896F|TEP1_uc010tlh.1_Missense_Mutation_p.S342F	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	2004	WD 9.				telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GAGCCAGAGGGACTGAAGGGA	0.597													17	27					0	0	0.004007	0	0
PNP	4860	broad.mit.edu	37	14	20940628	20940628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:20940628G>A	uc001vxo.3	+	2	315	c.173G>A	c.(172-174)CGA>CAA	p.R58Q	PNP_uc010ahm.1_Missense_Mutation_p.R58Q|PNP_uc010ahn.2_Missense_Mutation_p.R58Q|PNP_uc001vxn.3_5'UTR	NM_000270	NP_000261	P00491	PNPH_HUMAN	nucleoside phosphorylase	58					immune response|inosine catabolic process|interleukin-2 secretion|NAD biosynthesis via nicotinamide riboside salvage pathway|nicotinamide riboside catabolic process|positive regulation of alpha-beta T cell differentiation|positive regulation of T cell proliferation|purine base metabolic process|purine nucleotide catabolic process|purine-containing compound salvage|response to drug|urate biosynthetic process	cytoskeleton|cytosol	drug binding|nucleoside binding|phosphate binding|purine base binding|purine-nucleoside phosphorylase activity			ovary(2)	2					Aciclovir(DB00787)|Cladribine(DB00242)|Mercaptopurine(DB01033)	AACTTTCCCCGAAGTACAGGT	0.468													27	16					0	0	0.005443	0	0
OR6S1	341799	broad.mit.edu	37	14	21108993	21108993	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:21108993T>C	uc001vxv.1	-	1	858	c.858A>G	c.(856-858)CCA>CCG	p.P286P		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		GATTCAACAGTGGTGTCACAA	0.443													77	61					0	0	0.003610	0	0
OR4E2	26686	broad.mit.edu	37	14	22134223	22134223	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:22134223G>A	uc010tmd.1	+	1	927	c.927G>A	c.(925-927)ACG>ACA	p.T309T		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		TTTTTTTCACGAAATCATATA	0.393													11	12					0	0	0.000673	0	0
LRP10	26020	broad.mit.edu	37	14	23346293	23346293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:23346293C>T	uc001whd.2	+	7	2252	c.1699C>T	c.(1699-1701)CCT>TCT	p.P567S	LRP10_uc001whe.2_Intron	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	567	Cytoplasmic (Potential).|Arg-rich.				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		GGGCTTGCTCCCTCGAACCAA	0.687													39	32					0	0	0.002222	0	0
PSMB11	122706	broad.mit.edu	37	14	23512017	23512017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:23512017G>A	uc010ake.1	+	1	642	c.583G>A	c.(583-585)GAC>AAC	p.D195N		NM_001099780	NP_001093250	A5LHX3	PSB11_HUMAN	proteasome beta 11 subunit precursor	195					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex	threonine-type endopeptidase activity				0	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00643)		CTATCGCTACGACATGAGCAC	0.627													19	34					0	0	0.007413	0	0
CTSG	1511	broad.mit.edu	37	14	25043013	25043013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:25043013C>T	uc001wpq.2	-	5	635	c.598G>A	c.(598-600)GAT>AAT	p.D200N		NM_001911	NP_001902	P08311	CATG_HUMAN	cathepsin G preproprotein	200	Peptidase S1.				immune response|proteolysis	cell surface|extracellular space|plasma membrane|stored secretory granule	heparin binding|serine-type endopeptidase activity			ovary(2)	2				GBM - Glioblastoma multiforme(265;0.0269)		CCTCCGGAATCCCCCTGTAGG	0.622													28	65					0	0	0.001512	0	0
NOVA1	4857	broad.mit.edu	37	14	26918102	26918102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:26918102G>A	uc001wpy.2	-	5	905	c.587C>T	c.(586-588)GCT>GTT	p.A196V	NOVA1_uc001wpz.2_Missense_Mutation_p.A172V|NOVA1_uc001wqa.2_Missense_Mutation_p.A74V	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	199	KH 2.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		CTCCATTACAGCCTTCACAGT	0.438													39	75					0	0	0.002222	0	0
HECTD1	25831	broad.mit.edu	37	14	31619269	31619269	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:31619269G>A	uc001wrc.1	-	13	2580	c.2091C>T	c.(2089-2091)ATC>ATT	p.I697I	HECTD1_uc001wrd.1_Silent_p.I212I	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	697					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		TTCCATCCAAGATAAATCTGA	0.388													27	55					0	0	0.005443	0	0
HEATR5A	25938	broad.mit.edu	37	14	31814460	31814460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:31814460G>A	uc001wrf.3	-	14	2089	c.2012C>T	c.(2011-2013)TCA>TTA	p.S671L	HEATR5A_uc010ami.2_Missense_Mutation_p.S569L|HEATR5A_uc001wrg.1_Missense_Mutation_p.S553L|HEATR5A_uc010tpk.1_Missense_Mutation_p.S964L	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	958							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		AATGATCAATGATAGAGAATG	0.333													10	33					0	0	0.000673	0	0
AKAP6	9472	broad.mit.edu	37	14	33293351	33293351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:33293351C>T	uc001wrq.2	+	13	6502	c.6332C>T	c.(6331-6333)TCG>TTG	p.S2111L		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	2111					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GACTTTTATTCGTACTTATCT	0.463													17	41					0	0	0.004990	0	0
SNX6	58533	broad.mit.edu	37	14	35072581	35072581	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:35072581G>A	uc001wsf.1	-	6	533	c.525C>T	c.(523-525)TTC>TTT	p.F175F	SNX6_uc001wse.1_Silent_p.F47F|SNX6_uc010tpm.1_Silent_p.F51F|SNX6_uc010amm.1_Silent_p.F51F	NM_152233	NP_689419	Q9UNH7	SNX6_HUMAN	sorting nexin 6 isoform b	163	PX.				cell communication|intracellular protein transport|negative regulation of epidermal growth factor receptor activity|negative regulation of transcription, DNA-dependent|negative regulation of transforming growth factor beta receptor signaling pathway|retrograde transport, endosome to Golgi	cytoplasmic vesicle membrane|early endosome membrane|nucleus	phosphatidylinositol binding|protein homodimerization activity				0	Breast(36;0.0473)|Hepatocellular(127;0.158)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00199)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.0245)		AGAAGACATGGAAATTTAAAT	0.299													6	26					0	0	0.001984	0	0
LRFN5	145581	broad.mit.edu	37	14	42356690	42356690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:42356690C>T	uc001wvm.2	+	3	2060	c.862C>T	c.(862-864)CTC>TTC	p.L288F	LRFN5_uc010ana.2_Missense_Mutation_p.L288F	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	288	Extracellular (Potential).|Ig-like.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TGAGCCTCCTCTCATTACTCG	0.493										HNSCC(30;0.082)			59	50					0	0	0.003610	0	0
TXNDC16	57544	broad.mit.edu	37	14	52957679	52957679	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:52957679G>A	uc001wzs.2	-	10	1250	c.801C>T	c.(799-801)CTC>CTT	p.L267L	TXNDC16_uc010tqu.1_Silent_p.L262L|TXNDC16_uc010aoe.2_RNA	NM_020784	NP_065835	Q9P2K2	TXD16_HUMAN	thioredoxin domain containing 16 isoform 1	267					cell redox homeostasis	extracellular region					0	Breast(41;0.0716)					AGCCCAGTTGGAGATGGACAG	0.383													17	31					0	0	0.004990	0	0
STYX	6815	broad.mit.edu	37	14	53223323	53223323	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:53223323C>T	uc010tqy.1	+	6	359	c.297C>T	c.(295-297)TTC>TTT	p.F99F	STYX_uc001xaa.2_Silent_p.F99F	NM_001130701	NP_001124173	Q8WUJ0	STYX_HUMAN	serine/threonine/tyrosine interacting protein	99	Tyrosine-protein phosphatase.				protein dephosphorylation|spermatogenesis	cytoplasm	protein tyrosine/serine/threonine phosphatase activity				0	Breast(41;0.176)					TACGTTTTTTCCCTATGGTAG	0.224													19	25					0	0	0.007413	0	0
TBPL2	387332	broad.mit.edu	37	14	55902652	55902652	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:55902652C>T	uc001xby.2	-	3	609	c.609G>A	c.(607-609)CAG>CAA	p.Q203Q		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	203					multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						AAACTATATTCCTGAAGAAAT	0.299													25	26					0	0	0.006320	0	0
RTN1	6252	broad.mit.edu	37	14	60213184	60213184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:60213184G>A	uc001xen.1	-	2	466	c.257C>T	c.(256-258)TCC>TTC	p.S86F		NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	86					neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		CATGGCACTGGAAACACCTGC	0.517													31	21					0	0	0.003271	0	0
C14orf39	317761	broad.mit.edu	37	14	60923639	60923639	+	Missense_Mutation	SNP	C	T	T	rs147627198		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:60923639C>T	uc001xez.3	-	15	1464	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K	C14orf39_uc010apo.2_Missense_Mutation_p.E163K	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	452								p.E452K(1)		ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TCCTACATTTCGAACGGGGGG	0.318													23	54					0	0	0.004656	0	0
PRKCH	5583	broad.mit.edu	37	14	61995922	61995922	+	Silent	SNP	C	T	T	rs141291003	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:61995922C>T	uc001xfn.2	+	11	1868	c.1563C>T	c.(1561-1563)ATC>ATT	p.I521I	PRKCH_uc010tsa.1_Silent_p.I360I|PRKCH_uc010tsb.1_Silent_p.I89I	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	521	Protein kinase.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		CAGACTATATCGCTCCAGAGG	0.527													28	37					0	0	0.002096	0	0
SPTB	6710	broad.mit.edu	37	14	65252598	65252598	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:65252598C>T	uc001xht.2	-	16	3687	c.3633G>A	c.(3631-3633)GAG>GAA	p.E1211E	SPTB_uc001xhr.2_Silent_p.E1211E|SPTB_uc001xhs.2_Silent_p.E1211E|SPTB_uc001xhu.2_Silent_p.E1211E	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1211	Spectrin 9.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCAAGAAATCCTCAAACTTCC	0.512													83	163					0	0	0.003610	0	0
SMOC1	64093	broad.mit.edu	37	14	70420162	70420162	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:70420162G>A	uc001xls.1	+	3	544	c.291G>A	c.(289-291)CTG>CTA	p.L97L	SMOC1_uc001xlt.1_Silent_p.L97L	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	97	Thyroglobulin type-1 1.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		AGTGTCGCCTGGAGCGGGCTC	0.562													45	43					0	0	0.003610	0	0
SMOC1	64093	broad.mit.edu	37	14	70420177	70420177	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:70420177C>T	uc001xls.1	+	3	559	c.306C>T	c.(304-306)GCC>GCT	p.A102A	SMOC1_uc001xlt.1_Silent_p.A102A	NM_022137	NP_071420	Q9H4F8	SMOC1_HUMAN	secreted modular calcium-binding protein 1	102	Thyroglobulin type-1 1.				cell differentiation|eye development|limb development|regulation of osteoblast differentiation|signal transduction	basement membrane	calcium ion binding			upper_aerodigestive_tract(1)|pancreas(1)	2				all cancers(60;0.00417)|BRCA - Breast invasive adenocarcinoma(234;0.0119)|OV - Ovarian serous cystadenocarcinoma(108;0.028)		GGGCTCAAGCCCTGGAGCAAG	0.572													26	53					0	0	0.006320	0	0
ADAM21	8747	broad.mit.edu	37	14	70925007	70925007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:70925007G>A	uc001xmd.2	+	1	791	c.791G>A	c.(790-792)GGA>GAA	p.G264E		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	264	Peptidase M12B.|Extracellular (Potential).				proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TGGAATCAAGGAAATGTTTTC	0.373													27	22					0	0	0.004656	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055040	72055040	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:72055040T>C	uc001xms.2	+	2	799	c.451T>C	c.(451-453)TCC>CCC	p.S151P	SIPA1L1_uc001xmt.2_Missense_Mutation_p.S151P|SIPA1L1_uc001xmu.2_Missense_Mutation_p.S151P|SIPA1L1_uc001xmv.2_Missense_Mutation_p.S151P	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	151					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GAACATGGACTCCAGATTTCT	0.478													23	35					0	0	0.002780	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72196830	72196830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:72196830C>T	uc001xms.2	+	18	5084	c.4736C>T	c.(4735-4737)GCC>GTC	p.A1579V	SIPA1L1_uc001xmt.2_Missense_Mutation_p.A1558V|SIPA1L1_uc001xmu.2_Missense_Mutation_p.A1558V|SIPA1L1_uc001xmv.2_Missense_Mutation_p.A1579V|SIPA1L1_uc010ttm.1_Missense_Mutation_p.A1033V|SIPA1L1_uc001xmw.2_Missense_Mutation_p.A344V	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1579					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		TCACGGCGGGCCTTGCACAGA	0.537													11	46					0	0	0.001368	0	0
RBM25	58517	broad.mit.edu	37	14	73578360	73578360	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:73578360C>T	uc001xno.2	+	16	2350	c.2142C>T	c.(2140-2142)CCC>CCT	p.P714P	RBM25_uc010ttu.1_Silent_p.P714P|RBM25_uc001xnp.2_Silent_p.P509P	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	714					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		AACTGGTTCCCTTGGATTATG	0.378													19	64					0	0	0.001216	0	0
PAPLN	89932	broad.mit.edu	37	14	73716730	73716730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:73716730G>A	uc010ttx.1	+	5	536	c.373G>A	c.(373-375)GAG>AAG	p.E125K	PAPLN_uc001xnw.3_Missense_Mutation_p.E125K|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.E125K	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	125						proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		TCCCAAGGGGGAGAACTTCTA	0.592													21	16					0	0	0.002299	0	0
C14orf115	55237	broad.mit.edu	37	14	74824458	74824458	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:74824458C>T	uc001xpw.3	+	2	1163	c.972C>T	c.(970-972)TTC>TTT	p.F324F		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	324					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		AGGACAGCTTCCACCGGGGGG	0.637													37	83					0	0	0.003610	0	0
VASH1	22846	broad.mit.edu	37	14	77236309	77236309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:77236309C>T	uc001xst.2	+	2	1243	c.313C>T	c.(313-315)CCC>TCC	p.P105S	VASH1_uc001xss.2_Missense_Mutation_p.P105S	NM_014909	NP_055724	Q7L8A9	VASH1_HUMAN	vasohibin 1	105					cell cycle arrest|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of endothelial cell proliferation	endoplasmic reticulum|extracellular space					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0283)		TCCCCAGATCCCCATACCGAG	0.602													65	66					0	0	0.003610	0	0
TMEM63C	57156	broad.mit.edu	37	14	77705059	77705059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:77705059C>T	uc001xtf.2	+	10	886	c.674C>T	c.(673-675)ACC>ATC	p.T225I	TMEM63C_uc010asq.1_Missense_Mutation_p.T225I	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	225						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CTAATGATCACCTATGTGCCC	0.463													14	40					0	0	0.004990	0	0
VIPAR	63894	broad.mit.edu	37	14	77910664	77910664	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:77910664G>A	uc001xtt.1	-	9	863	c.525C>T	c.(523-525)TTC>TTT	p.F175F	VIPAR_uc001xtu.1_Silent_p.F175F|VIPAR_uc010tvj.1_Silent_p.F126F|VIPAR_uc001xtv.1_Silent_p.F175F	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	175					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						GTAAGGAGCGGAATCTCTCTA	0.398													7	41					0	0	0.003080	0	0
KCNK13	56659	broad.mit.edu	37	14	90650488	90650488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:90650488G>A	uc001xye.1	+	2	810	c.368G>A	c.(367-369)GGA>GAA	p.G123E		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	123						integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				ACAGTAGGAGGAAAAATCTTT	0.483													32	66					0	0	0.004878	0	0
CATSPERB	79820	broad.mit.edu	37	14	92088094	92088094	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:92088094C>T	uc001xzs.1	-	19	2258	c.2118G>A	c.(2116-2118)AGG>AGA	p.R706R	CATSPERB_uc010aub.1_Silent_p.R228R	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	706					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				TTCGTCCATTCCTTTGCCCAA	0.368													26	47					0	0	0.005443	0	0
PPP4R4	57718	broad.mit.edu	37	14	94716540	94716540	+	Missense_Mutation	SNP	G	A	A	rs149950607		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:94716540G>A	uc001ycs.1	+	15	1797	c.1643G>A	c.(1642-1644)CGA>CAA	p.R548Q		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	548						cytoplasm|protein serine/threonine phosphatase complex	protein binding	p.R548Q(1)		skin(3)|upper_aerodigestive_tract(1)	4						GCGGCTTCACGAACTCTATGC	0.353													12	15					0	0	0.002450	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912841	94912841	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:94912841C>T	uc001ydd.1	-	3	804	c.744G>A	c.(742-744)AAG>AAA	p.K248K		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	248					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		TGTGCATTTCCTTTTGGTGCA	0.527													40	84					0	0	0.001951	0	0
TCL1B	9623	broad.mit.edu	37	14	96157134	96157134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:96157134C>T	uc001yez.2	+	2	266	c.224C>T	c.(223-225)TCC>TTC	p.S75F	TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL1B_uc001yfa.2_Missense_Mutation_p.S75F	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	75										ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		GAGCTACTCTCCTCCGGCCAG	0.582													52	79					0	0	0.003610	0	0
BCL11B	64919	broad.mit.edu	37	14	99641186	99641186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:99641186C>T	uc001yga.2	-	4	2254	c.1987G>A	c.(1987-1989)GAG>AAG	p.E663K	BCL11B_uc001ygb.2_Missense_Mutation_p.E592K	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	663						nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GGGAAGGGCTCGGTGCCTGGC	0.423			T	TLX3	T-ALL								5	10					0	0	0.001168	0	0
EML1	2009	broad.mit.edu	37	14	100377902	100377902	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:100377902C>T	uc001ygs.2	+	13	1552	c.1483C>T	c.(1483-1485)CGT>TGT	p.R495C	EML1_uc010tww.1_Missense_Mutation_p.R483C|EML1_uc001ygq.2_Missense_Mutation_p.R514C|EML1_uc001ygr.2_Missense_Mutation_p.R514C	NM_004434	NP_004425	O00423	EMAL1_HUMAN	echinoderm microtubule associated protein like 1	495	WD 5.					cytoplasm|microtubule|microtubule associated complex	calcium ion binding|protein binding			large_intestine(2)|pancreas(1)|ovary(1)|skin(1)	5		Melanoma(154;0.0879)|all_epithelial(191;0.216)				TCAAAAACTTCGTAAAACGGA	0.368													23	26					0	0	0.003330	0	0
C14orf68	283600	broad.mit.edu	37	14	100793541	100793541	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:100793541G>T	uc001yhc.2	+	4	234	c.161G>T	c.(160-162)CGG>CTG	p.R54L	C14orf68_uc001yhd.2_5'UTR	NM_207117	NP_997000	Q6Q0C1	S2547_HUMAN	chromosome 14 open reading frame 68	54	Solcar 1.|Helical; Name=2; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0		Melanoma(154;0.152)				GGCTTCTACCGGGGCCTCTCG	0.617													6	154					0.00307968	0.00387253	0.003080	1	0
MIR134	406924	broad.mit.edu	37	14	101521040	101521040	+	RNA	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:101521040T>C	hsa-mir-134|MI0000474	+			c.17T>C			uc010txo.1_RNA|MIR668_hsa-mir-668|MI0003761_5'Flank|MIR485_hsa-mir-485|MI0002469_5'Flank|hsa-mir-323b|MI0014206_5'Flank																	0						GTGTGACTGGTTGACCAGAGG	0.587													19	16					0	0	0.001216	0	0
TRAF3	7187	broad.mit.edu	37	14	103336638	103336638	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:103336638C>T	uc001ymc.1	+	3	453	c.100C>T	c.(100-102)CCT>TCT	p.P34S	TRAF3_uc001yme.1_Missense_Mutation_p.P34S|TRAF3_uc001ymd.1_Missense_Mutation_p.P34S|TRAF3_uc010txy.1_Missense_Mutation_p.P34S	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	34					apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		AGTTTTTGTCCCTGAACAAGG	0.542													26	55					0	0	0.003954	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103442265	103442265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:103442265G>A	uc001ymi.1	-	10	1574	c.1342C>T	c.(1342-1344)CGG>TGG	p.R448W		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	448	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		TCCAGCCTCCGAATCCTCCTC	0.617													49	73					0	0	0.003610	0	0
TNFAIP2	7127	broad.mit.edu	37	14	103596364	103596364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:103596364G>A	uc001ymm.1	+	4	1132	c.1001G>A	c.(1000-1002)CGA>CAA	p.R334Q	TNFAIP2_uc010awo.1_Missense_Mutation_p.R46Q|TNFAIP2_uc010txz.1_Missense_Mutation_p.R3Q|TNFAIP2_uc010tya.1_5'Flank	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	334					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			TTGATGGACCGAGCTCTGGAG	0.642													34	35					0	0	0.004878	0	0
AHNAK2	113146	broad.mit.edu	37	14	105415878	105415878	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:105415878C>T	uc010axc.1	-	7	6030	c.5910G>A	c.(5908-5910)CTG>CTA	p.L1970L	AHNAK2_uc001ypx.2_Silent_p.L1870L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1970						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGTCTCCCTCCAGCCGCGCAC	0.607													139	143					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106320631	106320631	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:106320631G>A	uc010tyt.1	-	3601		c.56343C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						TGCTGTGGGCGAAGTACCGGC	0.647													7	24					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	106329415	106329415	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:106329415G>A	uc010tyt.1	-	3592		c.54494C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Silent_p.V12V|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Silent_p.V12V|uc001ysk.1_Silent_p.V12V|uc001ysl.1_Silent_p.V12V|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						TACCTGAGGAGACGGTGACCG	0.542													28	17					0	0	0.002852	0	0
ADAM6	8755	broad.mit.edu	37	14	106330789	106330789	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:106330789C>T	uc010tyt.1	-	3527		c.53680G>A			uc001yrs.2_5'Flank|uc001yrt.2_Intron|uc001yrw.1_5'Flank|uc001yrx.1_5'Flank|uc001yrz.1_5'Flank|uc001yse.2_5'Flank|uc001ysf.2_Intron|uc001ysj.2_5'Flank|uc001ysk.1_5'Flank|uc001ysl.1_5'Flank|uc001ysm.1_5'Flank|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						GAAGGAAAGCCATCTTACCTG	0.582													5	21					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106653533	106653533	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:106653533C>T	uc010tyt.1	-	971		c.23430G>A								Parts of antibodies, mostly variable regions.												0						CCCACTCCAGCCCCTTTCCTG	0.552													33	85					0	0	0.004878	0	0
ADAM6	8755	broad.mit.edu	37	14	106653545	106653545	+	RNA	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:106653545A>T	uc010tyt.1	-	971		c.23418T>A								Parts of antibodies, mostly variable regions.												0						CCTTTCCTGGAGCCTGGCGGA	0.572													35	89					0	0	0.004878	0	0
ADAM6	8755	broad.mit.edu	37	14	106733378	106733378	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:106733378G>A	uc010tyt.1	-	547		c.17358C>T								Parts of antibodies, mostly variable regions.												0						CCTTGCAGGAGACCTTCACTG	0.577													49	109					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106805507	106805507	+	RNA	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:106805507G>T	uc010tyt.1	-	360		c.13701C>A			uc001ysw.1_5'Flank					Parts of antibodies, mostly variable regions.												0						CTGCACCTGGGGCAGGACCCC	0.597													39	56					1.47857e-17	1.87726e-17	0.003610	1	0
ADAM6	8755	broad.mit.edu	37	14	107013068	107013068	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:107013068C>T	uc010tyt.1	-	169		c.7989G>A								Parts of antibodies, mostly variable regions.												0						TGTTGTCCCACCATAAGCTTT	0.493													25	61					0	0	0.004656	0	0
ADAM6	8755	broad.mit.edu	37	14	107113954	107113954	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:107113954G>A	uc010tyt.1	-	84		c.3919C>T								Parts of antibodies, mostly variable regions.												0						TACTGAAGGTGAATCCAGAGG	0.547													35	183					0	0	0.003755	0	0
ADAM6	8755	broad.mit.edu	37	14	107199365	107199365	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr14:107199365G>A	uc010tyt.1	-	20		c.1450C>T								Parts of antibodies, mostly variable regions.												0						TAACAACAAGGAAAACCCAGC	0.468													30	68					0	0	0.002445	0	0
LOC646214	646214	broad.mit.edu	37	15	21937005	21937005	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:21937005C>T	uc010tzj.1	-	1		c.3735G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						TCCTTCCATTCCCAAAAGTAC	0.473													33	109					0	0	0.001786	0	0
Unknown	0	broad.mit.edu	37	15	22440610	22440610	+	Silent	SNP	G	A	A	rs112586305		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:22440610G>A	uc001yug.2	-	1	256	c.237C>T	c.(235-237)ATC>ATT	p.I79I						full-length cDNA clone CS0DI014YE21 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGACAACATCGATGATCGTTG	0.483													8	27					0	0	0.000673	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22867576	22867576	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:22867576C>T	uc001yur.3	+	19	2782	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F	TUBGCP5_uc001yuq.2_Silent_p.F884F	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	884					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		ATCGCATGTTCCTCTTAAGAG	0.438													46	38					0	0	0.003610	0	0
NDN	4692	broad.mit.edu	37	15	23931405	23931405	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:23931405C>T	uc001ywk.2	-	1	1046	c.960G>A	c.(958-960)GAG>GAA	p.E320E		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	320					negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		TTTGCTAGTCCTCAGAGACAC	0.577									Prader-Willi_syndrome				71	48					0	0	0.003610	0	0
UBE3A	7337	broad.mit.edu	37	15	25616063	25616063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:25616063G>A	uc001zaq.2	-	4	1267	c.1267C>T	c.(1267-1269)CCT>TCT	p.P423S	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.P400S|UBE3A_uc001zas.2_Missense_Mutation_p.P420S|UBE3A_uc001zat.2_Missense_Mutation_p.P400S	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	423	Interaction with HCV core protein.			P -> L (in Ref. 7; AAA35542).	brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		TCCACTCGAGGACCTTTCTTG	0.433													24	9					0	0	0.003330	0	0
GABRG3	2567	broad.mit.edu	37	15	27572069	27572069	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:27572069C>T	uc001zbg.1	+	4	550	c.384C>T	c.(382-384)ATC>ATT	p.I128I	GABRG3_uc001zbf.2_Silent_p.I128I	NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	128	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		TAATCTGGATCCCAGACACCA	0.458													16	76					0	0	0.003163	0	0
HERC2	8924	broad.mit.edu	37	15	28502359	28502359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:28502359G>A	uc001zbj.2	-	17	2471	c.2365C>T	c.(2365-2367)CCT>TCT	p.P789S	HERC2_uc001zbl.1_Missense_Mutation_p.P484S	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	789					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACCACAAAAGGGACACGGAGG	0.532													13	39					0	0	0.002450	0	0
HERC2	8924	broad.mit.edu	37	15	28525345	28525345	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:28525345G>A	uc001zbj.2	-	5	517	c.411C>T	c.(409-411)GCC>GCT	p.A137A	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	137					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TGAGTCGCAGGGCTGAGAGGG	0.493													57	27					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	15	28900747	28900747	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:28900747C>T	uc010uan.1	+	3		c.678C>T			uc010azc.2_Intron|uc010uao.1_RNA					Homo sapiens cDNA FLJ55955 complete cds, highly similar to HECT domain and RCC1-like domain-containing protein 2.																		CGCTGCACTCCCTGACTCAGT	0.622													22	49					0	0	0.002780	0	0
APBA2	321	broad.mit.edu	37	15	29390742	29390743	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:29390742_29390743CC>TT	uc001zck.2	+	8	1508_1509	c.1301_1302CC>TT	c.(1300-1302)TCC>TTT	p.S434F	APBA2_uc010azj.2_Missense_Mutation_p.S422F|APBA2_uc010uat.1_Missense_Mutation_p.S422F|APBA2_uc001zcl.2_Missense_Mutation_p.S422F|APBA2_uc001zcm.1_Missense_Mutation_p.S126F	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	434	PID.				nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		CTCTTCATTTCCACCCAGAGGA	0.441													16	67					0	0	0.004672	0	0
CHRFAM7A	89832	broad.mit.edu	37	15	30659728	30659728	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:30659728G>A	uc001zdt.1	-	9	1179	c.613C>T	c.(613-615)CAG>TAG	p.Q205*	DKFZP434L187_uc001zds.2_Intron|CHRFAM7A_uc001zdu.1_Nonsense_Mutation_p.Q114*|CHRFAM7A_uc010azn.2_Nonsense_Mutation_p.Q114*	NM_139320	NP_647536	Q494W8	CRFM7_HUMAN	CHRNA7-FAM7A fusion isoform 1	205	Helical; (Potential).					integral to membrane|postsynaptic membrane	extracellular ligand-gated ion channel activity			skin(1)	1		all_lung(180;3.42e-11)|Breast(32;0.000153)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		GCGAAGTACTGGGCTGTGGAG	0.627													27	30					0	0	0.007291	0	0
TRPM1	4308	broad.mit.edu	37	15	31323279	31323279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:31323279G>A	uc001zfm.2	-	22	3096	c.2968C>T	c.(2968-2970)CCA>TCA	p.P990S	TRPM1_uc010azy.2_Missense_Mutation_p.P897S|TRPM1_uc001zfl.2_Intron	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	990	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		TTCTCCTCTGGATGCAGAATG	0.488													13	70					0	0	0.002450	0	0
RYR3	6263	broad.mit.edu	37	15	33858947	33858947	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:33858947C>T	uc001zhi.2	+	12	1285	c.1215C>T	c.(1213-1215)TCC>TCT	p.S405S	RYR3_uc010bar.2_Silent_p.S405S	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	405	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GTGAGGAGTCCCAGGCTGCTC	0.532													14	51					0	0	0.002450	0	0
RYR3	6263	broad.mit.edu	37	15	34130152	34130152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:34130152G>A	uc001zhi.2	+	89	12041	c.11971G>A	c.(11971-11973)GGG>AGG	p.G3991R	RYR3_uc010bar.2_Missense_Mutation_p.G3986R	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3991					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CAAGGACATAGGGTTTAATGT	0.433													22	101					0	0	0.001523	0	0
EIF2AK4	440275	broad.mit.edu	37	15	40235622	40235622	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:40235622C>G	uc001zkm.1	+	3	346	c.296C>G	c.(295-297)TCA>TGA	p.S99*	EIF2AK4_uc001zkl.2_Nonsense_Mutation_p.S99*	NM_001013703	NP_001013725	Q9P2K8	E2AK4_HUMAN	eukaryotic translation initiation factor 2 alpha	99	RWD.				translation	cytosolic ribosome	aminoacyl-tRNA ligase activity|ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|protein homodimerization activity			lung(2)|stomach(1)|skin(1)	4		all_cancers(109;1.05e-19)|all_epithelial(112;4.38e-17)|Lung NSC(122;1.09e-12)|all_lung(180;3.56e-11)|Melanoma(134;0.0575)|Ovarian(310;0.0826)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;5.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0616)		AAAGGTCTATCAAATGAAAGT	0.338													33	24					0	0	0.003271	0	0
CASC5	57082	broad.mit.edu	37	15	40942524	40942524	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:40942524G>A	uc010bbs.1	+	19	6359	c.6198G>A	c.(6196-6198)GAG>GAA	p.E2066E	CASC5_uc010bbt.1_Silent_p.E2040E	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	2066	Necessary for kinetochore localization and for interaction with NSL1 and DSN1.|Potential.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		AGGATGAAGAGAAAAACAATC	0.328													58	39					0	0	0.003610	0	0
DNAJC17	55192	broad.mit.edu	37	15	41060239	41060239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:41060239C>T	uc001zms.1	-	11	825	c.814G>A	c.(814-816)GAC>AAC	p.D272N	C15orf62_uc010bby.2_5'Flank	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 17	272					protein folding		heat shock protein binding|nucleotide binding|RNA binding|unfolded protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		CTCTCGTAGTCCCTCTCTGAC	0.662													49	25					0	0	0.003610	0	0
DNAJC17	55192	broad.mit.edu	37	15	41068815	41068815	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:41068815G>A	uc001zms.1	-	5	317	c.306C>T	c.(304-306)GCC>GCT	p.A102A	DNAJC17_uc010bbz.1_RNA|DNAJC17_uc010bca.1_RNA|DNAJC17_uc010bcb.1_RNA	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 17	102					protein folding		heat shock protein binding|nucleotide binding|RNA binding|unfolded protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GCCGCTCCCGGGCCTCCAGGT	0.627													14	96					0	0	0.002780	0	0
PLA2G4D	283748	broad.mit.edu	37	15	42371860	42371860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:42371860C>T	uc001zox.2	-	13	1287	c.1192G>A	c.(1192-1194)GAG>AAG	p.E398K		NM_178034	NP_828848	Q86XP0	PA24D_HUMAN	phospholipase A2, group IVD	398	PLA2c.				phospholipid catabolic process	cytoplasmic vesicle membrane|cytosol	metal ion binding|phospholipase A2 activity			large_intestine(1)|skin(1)	2		all_cancers(109;6.37e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.019)|Ovarian(310;0.143)|Colorectal(260;0.245)		OV - Ovarian serous cystadenocarcinoma(18;4.9e-17)|GBM - Glioblastoma multiforme(94;1.02e-06)		GAAAAGACCTCCAGCTTGCTC	0.662													35	13					0	0	0.003755	0	0
TGM5	9333	broad.mit.edu	37	15	43531464	43531464	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:43531464C>T	uc001zrd.1	-	8	1010	c.1002G>A	c.(1000-1002)TGG>TGA	p.W334*	TGM5_uc001zrc.1_5'UTR|TGM5_uc001zre.1_Nonsense_Mutation_p.W252*	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	334					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	CATGGAAGTTCCTGTGTCAAA	0.532													16	57					0	0	0.004990	0	0
TGM7	116179	broad.mit.edu	37	15	43568686	43568686	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:43568686C>T	uc001zrf.1	-	13	2105	c.2100G>A	c.(2098-2100)AAG>AAA	p.K700K		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	700					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CGAAGATGTCCTTGTAGCCTT	0.607													18	100					0	0	0.001523	0	0
C15orf43	145645	broad.mit.edu	37	15	45270688	45270689	+	Missense_Mutation	DNP	TT	GG	GG			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:45270688_45270689TT>GG	uc001zuk.2	+	7	542_543	c.525_526TT>GG	c.(523-528)GGTTAT>GGGGAT	p.Y176D		NM_152448	NP_689661	Q8NHR7	CO043_HUMAN	hypothetical protein LOC145645	176											0		all_cancers(109;3.68e-08)|all_epithelial(112;1.05e-06)|Lung NSC(122;1.42e-05)|all_lung(180;0.000112)|Melanoma(134;0.0192)		all cancers(107;7.64e-17)|GBM - Glioblastoma multiforme(94;2.03e-06)		ATTTTGTAGGTTATATATCAAT	0.297													16	42					0	0	0.004672	0	0
SHF	90525	broad.mit.edu	37	15	45467505	45467505	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:45467505G>A	uc001zuy.2	-	4	1059	c.564C>T	c.(562-564)TCC>TCT	p.S188S	SHF_uc010uen.1_Silent_p.S51S|SHF_uc010ueo.1_Silent_p.S51S|SHF_uc010uep.1_Silent_p.S51S|SHF_uc010ueq.1_Silent_p.S51S|SHF_uc010uer.1_Silent_p.S51S|SHF_uc010ues.1_Silent_p.S51S|SHF_uc010uet.1_Silent_p.S51S|SHF_uc010ueu.1_Silent_p.S51S	NM_138356	NP_612365	Q7M4L6	SHF_HUMAN	Src homology 2 domain containing F	188										ovary(1)	1		all_cancers(109;8.13e-11)|all_epithelial(112;6.29e-09)|Lung NSC(122;3.57e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.1e-16)|GBM - Glioblastoma multiforme(94;5.98e-06)		CTGGCAGGCGGGACTCCCGGG	0.627													5	4					0	0	0.001168	0	0
SLC28A2	9153	broad.mit.edu	37	15	45554238	45554238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:45554238G>A	uc001zva.2	+	4	261	c.196G>A	c.(196-198)GCA>ACA	p.A66T		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	66					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		TTTCAGCAAAGCAAGAAGTTT	0.398													37	61					0	0	0.001951	0	0
SLC12A1	6557	broad.mit.edu	37	15	48539651	48539651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:48539651C>T	uc001zwn.3	+	13	1894	c.1678C>T	c.(1678-1680)CTT>TTT	p.L560F	SLC12A1_uc010uew.1_Missense_Mutation_p.L366F|SLC12A1_uc010bem.2_Missense_Mutation_p.L560F|SLC12A1_uc001zwq.3_Missense_Mutation_p.L331F|SLC12A1_uc001zwr.3_Missense_Mutation_p.L287F	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	560	Helical; (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	GGCATTTATTCTTATTGGTTT	0.318													6	19					0	0	0.001168	0	0
GABPB1	2553	broad.mit.edu	37	15	50596163	50596163	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:50596163C>T	uc001zyb.2	-	3	700	c.276G>A	c.(274-276)AAG>AAA	p.K92K	GABPB1_uc001zya.2_Silent_p.K92K|GABPB1_uc010ufg.1_Silent_p.K16K|GABPB1_uc001zyc.2_Silent_p.K92K|GABPB1_uc001zyd.2_Silent_p.K92K|GABPB1_uc001zye.2_Silent_p.K92K|GABPB1_uc001zyf.2_Silent_p.K92K	NM_005254	NP_005245	Q06547	GABP1_HUMAN	GA binding protein transcription factor, beta	92	ANK 3.				positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)	1						GAACACATACCTTAAGTAAAA	0.398													10	57					0	0	0.000978	0	0
DMXL2	23312	broad.mit.edu	37	15	51780227	51780227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:51780227G>A	uc002abf.2	-	22	5366	c.5141C>T	c.(5140-5142)TCC>TTC	p.S1714F	DMXL2_uc010ufy.1_Missense_Mutation_p.S1714F|DMXL2_uc010bfa.2_Missense_Mutation_p.S1078F	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1714						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		TCCAAGTAAGGAAAAAGCATT	0.373													96	60					0	0	0.003610	0	0
MYO5C	55930	broad.mit.edu	37	15	52498066	52498066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:52498066C>T	uc010bff.2	-	37	4621	c.4484G>A	c.(4483-4485)CGA>CAA	p.R1495Q	MYO5C_uc010uga.1_RNA|uc002abv.2_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1495	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		ATGATATATTCGTATAGCCAC	0.303													21	22					0	0	0.001882	0	0
WDR72	256764	broad.mit.edu	37	15	53907812	53907812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:53907812G>A	uc002acj.2	-	15	2633	c.2591C>T	c.(2590-2592)TCC>TTC	p.S864F	WDR72_uc010bfi.1_Missense_Mutation_p.S864F	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	864										lung(1)|skin(1)	2				all cancers(107;0.0511)		AACTTTCCTGGAAAATAAATT	0.353													4	19					0	0	0.000248	0	0
UNC13C	440279	broad.mit.edu	37	15	54435820	54435820	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:54435820C>T	uc002ack.2	+	3	3010	c.3010C>T	c.(3010-3012)CGA>TGA	p.R1004*		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1004					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		ATTTAAGGCTCGAATAGTAAG	0.388													14	13					0	0	0.004007	0	0
UNC13C	440279	broad.mit.edu	37	15	54817794	54817794	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:54817794C>T	uc002ack.2	+	23	5505	c.5505C>T	c.(5503-5505)CTC>CTT	p.L1835L		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1835					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		AGGTTAAGCTCAGTGGGGTCC	0.383													4	14					0	0	0.000248	0	0
ZNF280D	54816	broad.mit.edu	37	15	56923887	56923887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:56923887G>A	uc002adu.2	-	22	2966	c.2749C>T	c.(2749-2751)CAT>TAT	p.H917Y	uc002ads.2_5'Flank|ZNF280D_uc002adv.2_Missense_Mutation_p.H904Y|ZNF280D_uc010bfq.2_Missense_Mutation_p.H917Y|ZNF280D_uc002adt.2_Missense_Mutation_p.H158Y|ZNF280D_uc010bfp.2_RNA	NM_017661	NP_060131	Q6N043	Z280D_HUMAN	suppressor of hairy wing homolog 4 isoform 1	917					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.0399)|GBM - Glioblastoma multiforme(80;0.0787)		GGTTCCAAATGAATACTGCCT	0.408													15	79					0	0	0.003163	0	0
AQP9	366	broad.mit.edu	37	15	58465384	58465384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:58465384C>T	uc002aez.2	+	3	713	c.356C>T	c.(355-357)ACC>ATC	p.T119I	ALDH1A2_uc010ugw.1_Intron|AQP9_uc010ugx.1_Missense_Mutation_p.T54I	NM_020980	NP_066190	O43315	AQP9_HUMAN	aquaporin 9	119	Helical; (Potential).				cellular response to cAMP|excretion|immune response|metabolic process|response to mercury ion|response to osmotic stress|water homeostasis	integral to plasma membrane|intracellular membrane-bounded organelle	amine transmembrane transporter activity|carboxylic acid transmembrane transporter activity|glycerol channel activity|porin activity|purine base transmembrane transporter activity|pyrimidine base transmembrane transporter activity|water channel activity			ovary(1)	1				GBM - Glioblastoma multiforme(80;0.16)		GGGGCTGCAACCGTCTTTGGC	0.468													23	112					0	0	0.006320	0	0
LIPC	3990	broad.mit.edu	37	15	58840751	58840751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:58840751G>A	uc010bga.1	+	8	1639	c.1031G>A	c.(1030-1032)CGA>CAA	p.R344Q	LIPC_uc010bfz.1_Missense_Mutation_p.R344Q|LIPC_uc002afa.1_Missense_Mutation_p.R344Q|LIPC_uc010bgb.1_Missense_Mutation_p.R242Q|LIPC_uc010ugy.1_Missense_Mutation_p.R283Q	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	344					cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		CTCGTAACGCGAGCCCAGTCC	0.632													14	6					0	0	0.004007	0	0
RNF111	54778	broad.mit.edu	37	15	59383267	59383267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:59383267C>T	uc002afv.2	+	12	2932	c.2653C>T	c.(2653-2655)CAT>TAT	p.H885Y	RNF111_uc002afs.2_Missense_Mutation_p.H885Y|RNF111_uc002aft.2_Missense_Mutation_p.H894Y|RNF111_uc002afu.2_Missense_Mutation_p.H884Y|RNF111_uc002afw.2_Missense_Mutation_p.H894Y|RNF111_uc002afx.2_Missense_Mutation_p.H411Y|RNF111_uc002afy.2_Missense_Mutation_p.H36Y	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	885					multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		GGAACTGATTCATTTGGAAGA	0.338													66	46					0	0	0.003610	0	0
CILP	8483	broad.mit.edu	37	15	65489678	65489678	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:65489678C>T	uc002aon.2	-	9	3127	c.2946G>A	c.(2944-2946)GGG>GGA	p.G982G		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	982					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						CATACAGCTTCCCCACTGTCT	0.557													37	15					0	0	0.005524	0	0
C15orf44	81556	broad.mit.edu	37	15	65897475	65897475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:65897475G>A	uc002apd.2	-	3	658	c.322C>T	c.(322-324)CCT>TCT	p.P108S	C15orf44_uc010uix.1_Missense_Mutation_p.P144S|C15orf44_uc010uiz.1_Intron|C15orf44_uc010uja.1_Missense_Mutation_p.P59S|C15orf44_uc010ujb.1_Missense_Mutation_p.P29S|C15orf44_uc002ape.3_Missense_Mutation_p.P108S|C15orf44_uc010uiy.1_Missense_Mutation_p.P29S|C15orf44_uc010ujc.1_Missense_Mutation_p.P108S	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	108	VWFA.									ovary(1)	1						ACCTGGCAAGGAATTGCACCA	0.413													20	61					0	0	0.001882	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72954765	72954765	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:72954765G>A	uc010uks.1	+	11	1061	c.1020G>A	c.(1018-1020)CAG>CAA	p.Q340Q		NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	340	Potential.										0						AGAGACTCCAGGAGCAGGAGG	0.562													68	67					0	0	0.003610	0	0
CYP11A1	1583	broad.mit.edu	37	15	74659855	74659855	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:74659855C>T	uc002axt.2	-	1	227	c.72G>A	c.(70-72)AGG>AGA	p.R24R	CYP11A1_uc002axs.2_5'Flank|CYP11A1_uc010bjm.1_5'Flank|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Silent_p.R24R|CYP11A1_uc010ulj.1_5'UTR|CYP11A1_uc010bjq.2_Silent_p.R24R	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	24					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding			ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	CCAGCCCCTCCCTGGGGGCAC	0.642													35	26					0	0	0.004878	0	0
SGK269	79834	broad.mit.edu	37	15	77425613	77425613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:77425613G>A	uc002bcm.2	-	5	4119	c.3811C>T	c.(3811-3813)CCG>TCG	p.P1271S		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1271					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		TGTCTCTGCGGCTTCTGGATG	0.502													50	34					0	0	0.003610	0	0
CRABP1	1381	broad.mit.edu	37	15	78633401	78633401	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:78633401G>A	uc002bdp.2	+	2	192	c.87G>A	c.(85-87)CTG>CTA	p.L29L		NM_004378	NP_004369	P29762	RABP1_HUMAN	cellular retinoic acid binding protein 1	29	Nuclear localization signal (By similarity).				multicellular organismal development|signal transduction	cytoplasm	retinal binding|retinol binding|transporter activity				0					Alitretinoin(DB00523)|Etretinate(DB00926)	ACGCCATGCTGAGGAAAGTGG	0.642													18	10					0	0	0.006122	0	0
CHRNA5	1138	broad.mit.edu	37	15	78882512	78882512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:78882512C>T	uc002bdy.2	+	5	941	c.779C>T	c.(778-780)CCC>CTC	p.P260L	CHRNA5_uc002bdz.2_Intron	NM_000745	NP_000736	P30532	ACHA5_HUMAN	cholinergic receptor, nicotinic, alpha 5	260	Helical; (Potential).				behavioral response to nicotine	cell junction|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CTTATAATACCCTGTATTGGG	0.393													62	41					0	0	0.003610	0	0
ARNT2	9915	broad.mit.edu	37	15	80869278	80869278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:80869278C>T	uc002bfr.2	+	15	1751	c.1585C>T	c.(1585-1587)CCC>TCC	p.P529S	ARNT2_uc010unm.1_Missense_Mutation_p.P518S|ARNT2_uc002bfs.2_Missense_Mutation_p.P518S	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	529					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			AAGCCCATTTCCCTCTGGACA	0.572													86	30					0	0	0.003610	0	0
IL16	3603	broad.mit.edu	37	15	81592267	81592267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:81592267C>T	uc002bgh.3	+	14	2976	c.2600C>T	c.(2599-2601)TCC>TTC	p.S867F	IL16_uc010blq.1_Missense_Mutation_p.S821F|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.S909F|IL16_uc002bgg.2_Missense_Mutation_p.S867F|IL16_uc002bgi.1_Missense_Mutation_p.S257F|IL16_uc002bgj.2_Missense_Mutation_p.S361F|IL16_uc002bgk.2_Missense_Mutation_p.S166F|IL16_uc002bgl.1_Missense_Mutation_p.S166F|IL16_uc010unq.1_Missense_Mutation_p.S166F	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	867					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						CTCCAGCCCTCCTCTGGGGAG	0.537													5	39					0	0	0.000602	0	0
BNC1	646	broad.mit.edu	37	15	83932634	83932634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:83932634G>A	uc002bjt.1	-	4	1457	c.1369C>T	c.(1369-1371)CCT>TCT	p.P457S	BNC1_uc010uos.1_Missense_Mutation_p.P445S	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	457					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CCTGAACCAGGGTAGCTGGGA	0.542													47	17					0	0	0.003610	0	0
BNC1	646	broad.mit.edu	37	15	83933219	83933219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:83933219C>T	uc002bjt.1	-	4	872	c.784G>A	c.(784-786)GAA>AAA	p.E262K	BNC1_uc010uos.1_Missense_Mutation_p.E250K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	262					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						ATATATTGTTCGGGCAATGAC	0.498													10	50					0	0	0.000673	0	0
ALPK3	57538	broad.mit.edu	37	15	85402498	85402498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:85402498G>A	uc002ble.2	+	7	4615	c.4448G>A	c.(4447-4449)CGG>CAG	p.R1483Q		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1483	Ig-like 2.				heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CGGAAGATTCGGGTGGAGCAG	0.567													39	21					0	0	0.002222	0	0
SLC28A1	9154	broad.mit.edu	37	15	85486726	85486726	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:85486726C>T	uc002blg.2	+	16	1834	c.1632C>T	c.(1630-1632)TTC>TTT	p.F544F	SLC28A1_uc010bnb.2_Silent_p.F544F|SLC28A1_uc010upe.1_Silent_p.F378F|SLC28A1_uc010upf.1_Silent_p.F544F|SLC28A1_uc010upg.1_Intron	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	544	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TTGCCAATTTCAGCTCCATTG	0.537													14	55					0	0	0.004007	0	0
AKAP13	11214	broad.mit.edu	37	15	86125290	86125290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:86125290G>A	uc002blv.1	+	7	4161	c.3991G>A	c.(3991-3993)GAG>AAG	p.E1331K	AKAP13_uc002blt.1_Missense_Mutation_p.E1331K|AKAP13_uc002blu.1_Missense_Mutation_p.E1331K|AKAP13_uc010bne.1_5'Flank	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	1331					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						TGGAAGGGAGGAGCCAGAGAA	0.498													11	55					0	0	0.001855	0	0
C15orf42	90381	broad.mit.edu	37	15	90167874	90167874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:90167874C>T	uc002boe.2	+	20	4333	c.4333C>T	c.(4333-4335)CTC>TTC	p.L1445F	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1445					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			AGGCCCTGGTCTCAGGAGTGA	0.557													68	35					0	0	0.003610	0	0
SEMA4B	10509	broad.mit.edu	37	15	90766867	90766867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:90766867C>T	uc002boy.2	+	9	1221	c.938C>T	c.(937-939)CCC>CTC	p.P313L	SEMA4B_uc002boz.2_Missense_Mutation_p.P313L|SEMA4B_uc010uqd.1_Missense_Mutation_p.P151L|SEMA4B_uc002bpa.2_Missense_Mutation_p.P151L|SEMA4B_uc010bnv.1_5'UTR	NM_020210	NP_064595			semaphorin 4B precursor											ovary(1)|breast(1)|kidney(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0125)|all_lung(78;0.0272)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			TGCTCACGGCCCGACGATGGC	0.637													8	24					0	0	0.003080	0	0
IQGAP1	8826	broad.mit.edu	37	15	91017136	91017136	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:91017136C>T	uc002bpl.1	+	21	2543	c.2442C>T	c.(2440-2442)TCC>TCT	p.S814S		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	814	IQ 3.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			AGATTCAGTCCCTGGCAAGGA	0.512													32	17					0	0	0.002445	0	0
MCTP2	55784	broad.mit.edu	37	15	94945194	94945194	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:94945194C>T	uc002btj.2	+	16	2096	c.2031C>T	c.(2029-2031)TTC>TTT	p.F677F	MCTP2_uc010boj.2_Silent_p.F406F|MCTP2_uc010bok.2_Silent_p.F677F|MCTP2_uc002btk.3_Silent_p.F265F|MCTP2_uc002btl.2_Silent_p.F265F	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	677					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CAATGCAGTTCCTTAAAAGCT	0.353													27	23					0	0	0.006320	0	0
SPATA8	145946	broad.mit.edu	37	15	97328297	97328297	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:97328297C>T	uc002bue.2	+	3	478	c.268C>T	c.(268-270)CAG>TAG	p.Q90*	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	90										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			CCCACTGATTCAGAAGATAAA	0.448													17	67					0	0	0.004990	0	0
C15orf51	196968	broad.mit.edu	37	15	100340249	100340249	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:100340249C>T	uc010urx.1	-	4		c.678G>A			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|C15orf51_uc010bow.2_RNA|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TATTTCTTCCCACGCGAGTCT	0.627													6	32					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	16	66940	66940	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:66940G>A	uc002cfg.1	-	5	1355	c.696C>T	c.(694-696)AGC>AGT	p.S232S		NM_182905	NP_878908			WAS protein family homolog 1																		GCTCTCTCTTGCTGATGGACA	0.597													9	17					0	0	0.000673	0	0
RPL3L	6123	broad.mit.edu	37	16	2004098	2004098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:2004098G>A	uc002cnh.2	-	2	102	c.55C>T	c.(55-57)CAT>TAT	p.H19Y		NM_005061	NP_005052	Q92901	RL3L_HUMAN	ribosomal protein L3-like	19					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|ribosome	RNA binding|structural constituent of ribosome				0						CTCCTCTTATGGGGCAGGAAG	0.682													13	19					0	0	0.004007	0	0
SLC9A3R2	9351	broad.mit.edu	37	16	2086823	2086823	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:2086823C>A	uc002coi.2	+	4	808	c.689C>A	c.(688-690)CCC>CAC	p.P230H	SLC9A3R2_uc002coj.2_Missense_Mutation_p.P230H|SLC9A3R2_uc002cok.2_Missense_Mutation_p.P119H	NM_001130012	NP_001123484	Q15599	NHRF2_HUMAN	solute carrier family 9 isoform 3 regulator 2	230	PDZ 2.				protein complex assembly	apical plasma membrane|endomembrane system|nucleus	beta-catenin binding|phosphatase binding|protein C-terminus binding|receptor binding			central_nervous_system(1)	1						GTCGTGGACCCCGAGACAGAT	0.672													19	19					0.000958276	0.00120614	0.007413	1	0
PKD1	5310	broad.mit.edu	37	16	2154543	2154543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:2154543G>A	uc002cos.1	-	22	8326	c.8117C>T	c.(8116-8118)ACC>ATC	p.T2706I	PKD1_uc002cot.1_Missense_Mutation_p.T2706I|PKD1_uc010bse.1_5'Flank	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2706	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GGGCGTCACGGTGCCCGCGGT	0.692													3	7					0	0	0.004672	0	0
PKD1	5310	broad.mit.edu	37	16	2160599	2160599	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:2160599G>A	uc002cos.1	-	15	4778	c.4569C>T	c.(4567-4569)TTC>TTT	p.F1523F	PKD1_uc002cot.1_Silent_p.F1523F	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1523	Extracellular (Potential).|PKD 10.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CCCTAACGGTGAAGTCACCTG	0.677													25	55					0	0	0.002780	0	0
ABCA3	21	broad.mit.edu	37	16	2369609	2369609	+	Silent	SNP	G	A	A	rs149038393		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:2369609G>A	uc002cpy.1	-	8	1558	c.846C>T	c.(844-846)GTC>GTT	p.V282V	ABCA3_uc010bsk.1_Silent_p.V282V|ABCA3_uc010bsl.1_Silent_p.V282V	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	282	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances	p.V282V(1)		breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				TCTCCTGCACGACAGCACGGG	0.617													30	45					0	0	0.001786	0	0
CLDN6	9074	broad.mit.edu	37	16	3065693	3065693	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:3065693C>T	uc002csu.3	-	2	390	c.330G>A	c.(328-330)GAG>GAA	p.E110E		NM_021195	NP_067018	P56747	CLD6_HUMAN	claudin 6	110	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity				0						TGGAATCCTTCTCCTCCACAC	0.607													19	37					0	0	0.006122	0	0
ZNF597	146434	broad.mit.edu	37	16	3487247	3487247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:3487247C>T	uc002cvd.2	-	4	636	c.452G>A	c.(451-453)GGA>GAA	p.G151E		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	151					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATTTTTGGCTCCTTCCCAGGG	0.378													40	88					0	0	0.002222	0	0
C16orf71	146562	broad.mit.edu	37	16	4790201	4790201	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:4790201G>A	uc002cxn.2	+	4	786	c.324G>A	c.(322-324)CAG>CAA	p.Q108Q		NM_139170	NP_631909	Q8IYS4	CP071_HUMAN	hypothetical protein LOC146562	108										central_nervous_system(1)	1						GGTGCAGACAGAACACAAGGA	0.522													43	100					0	0	0.003610	0	0
UBN1	29855	broad.mit.edu	37	16	4927460	4927460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:4927460C>T	uc002cyb.2	+	17	3679	c.3340C>T	c.(3340-3342)CCG>TCG	p.P1114S	UBN1_uc010uxw.1_Intron|UBN1_uc002cyc.2_Missense_Mutation_p.P1114S	NM_001079514	NP_001072982	Q9NPG3	UBN1_HUMAN	ubinuclein 1	1114					chromatin modification|interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter	PML body|tight junction	DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)	2						CACCCATATCCCGCAGAGTCT	0.632													54	124					0	0	0.003610	0	0
GRIN2A	2903	broad.mit.edu	37	16	10032373	10032373	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:10032373G>A	uc002czo.3	-	3	998	c.450C>T	c.(448-450)TCC>TCT	p.S150S	GRIN2A_uc010uym.1_Silent_p.S150S|GRIN2A_uc010uyn.1_5'UTR|GRIN2A_uc002czr.3_Silent_p.S150S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	150	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCTGCTGGATGGACGCTCCAA	0.488													23	24					0	0	0.003954	0	0
TEKT5	146279	broad.mit.edu	37	16	10788190	10788190	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:10788190T>A	uc002czz.1	-	1	613	c.541A>T	c.(541-543)AAT>TAT	p.N181Y		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	181	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TTCACCTCATTGGCCGCGCAC	0.572													98	132					0	0	0.003610	0	0
MYH11	4629	broad.mit.edu	37	16	15872688	15872688	+	Missense_Mutation	SNP	G	A	A	rs150759461	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:15872688G>A	uc002ddy.2	-	7	846	c.739C>T	c.(739-741)CGC>TGC	p.R247C	MYH11_uc002ddv.2_Missense_Mutation_p.R254C|MYH11_uc002ddw.2_Missense_Mutation_p.R247C|MYH11_uc002ddx.2_Missense_Mutation_p.R254C|MYH11_uc010bvg.2_Missense_Mutation_p.R79C|MYH11_uc002dea.1_5'UTR	NM_002474	NP_002465	P35749	MYH11_HUMAN	smooth muscle myosin heavy chain 11 isoform	247	Myosin head-like.				axon guidance|cardiac muscle fiber development|elastic fiber assembly|skeletal muscle myosin thick filament assembly|smooth muscle contraction	cytosol|melanosome|muscle myosin complex|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			ovary(6)|skin(3)|lung(2)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)	15						AAGTTGATGCGGATGAATTTG	0.552			T	CBFB	AML								26	27					0	0	0.001786	0	0
ABCC1	4363	broad.mit.edu	37	16	16225793	16225793	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:16225793G>A	uc010bvi.2	+	27	4141	c.3966_splice	c.e27+1	p.K1322_splice	ABCC1_uc010bvj.2_Splice_Site_p.K1263_splice|ABCC1_uc010bvk.2_Splice_Site_p.K1266_splice|ABCC1_uc010bvl.2_Splice_Site_p.K1322_splice|ABCC1_uc010bvm.2_Splice_Site_p.K1207_splice|ABCC1_uc002del.3_Splice_Site_p.K1216_splice	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1						hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GGGAGAAAAGGTGGGTACACA	0.602													6	23					0	0	0.001168	0	0
TMC7	79905	broad.mit.edu	37	16	19032952	19032952	+	Silent	SNP	G	A	A	rs145788880		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:19032952G>A	uc002dfq.2	+	4	592	c.462G>A	c.(460-462)GGG>GGA	p.G154G	TMC7_uc010vao.1_Silent_p.G154G|TMC7_uc002dfp.2_Silent_p.G154G|TMC7_uc010vap.1_Silent_p.G44G	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	154	Extracellular (Potential).					integral to membrane		p.G154G(1)		skin(2)|ovary(1)	3						TTTTTCCAGGGAAATTTGGCA	0.418													41	31					0	0	0.003610	0	0
TMC7	79905	broad.mit.edu	37	16	19051673	19051673	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:19051673C>T	uc002dfq.2	+	9	1372	c.1242C>T	c.(1240-1242)ATC>ATT	p.I414I	TMC7_uc010vao.1_Missense_Mutation_p.H409Y|TMC7_uc002dfp.2_Silent_p.I414I|TMC7_uc010vap.1_Silent_p.I304I	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	414	Helical; (Potential).					integral to membrane				skin(2)|ovary(1)	3						CTATTGTGATCACGCTGGCCA	0.403													45	35					0	0	0.003214	0	0
SYT17	51760	broad.mit.edu	37	16	19195419	19195419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:19195419G>A	uc002dfw.2	+	5	1232	c.901G>A	c.(901-903)GAC>AAC	p.D301N	SYT17_uc002dfx.2_Missense_Mutation_p.D240N|SYT17_uc002dfy.2_Missense_Mutation_p.D297N|SYT17_uc002dfv.1_Missense_Mutation_p.D240N	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	301						membrane|synaptic vesicle	transporter activity			ovary(1)	1						GTGTGAAGTTGACCTGGTCAA	0.532													82	157					0	0	0.003610	0	0
TMC5	79838	broad.mit.edu	37	16	19471576	19471576	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:19471576C>T	uc002dgc.3	+	6	1817	c.1068C>T	c.(1066-1068)TCC>TCT	p.S356S	TMC5_uc010vaq.1_Silent_p.S356S|TMC5_uc002dgb.3_Silent_p.S356S|TMC5_uc010var.1_Silent_p.S356S|TMC5_uc002dgd.1_Silent_p.S110S|TMC5_uc002dge.3_Silent_p.S110S|TMC5_uc002dgf.3_Silent_p.S18S|TMC5_uc002dgg.3_5'UTR	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	356	Extracellular (Potential).					integral to membrane				skin(1)	1						TAATCGCATCCCTTATACCCA	0.388													6	28					0	0	0.001168	0	0
GPR139	124274	broad.mit.edu	37	16	20043083	20043083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:20043083C>T	uc002dgu.1	-	2	1198	c.1036G>A	c.(1036-1038)GGA>AGA	p.G346R	GPR139_uc010vaw.1_Missense_Mutation_p.G253R	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	346	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)	2						ATAGGTTTTCCATTTTTGTCA	0.458													31	86					0	0	0.001512	0	0
ACSM2A	123876	broad.mit.edu	37	16	20476978	20476978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:20476978G>A	uc010bwe.2	+	4	556	c.317G>A	c.(316-318)GGG>GAG	p.G106E	ACSM2A_uc010bwd.1_RNA|ACSM2A_uc010vax.1_Missense_Mutation_p.G27E|ACSM2A_uc002dhf.3_Missense_Mutation_p.G106E|ACSM2A_uc002dhg.3_Missense_Mutation_p.G106E|ACSM2A_uc010vay.1_Missense_Mutation_p.G27E	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	106					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						CTGCAGCGTGGGGATCGTGTG	0.572													10	23					0	0	0.000673	0	0
DNAH3	55567	broad.mit.edu	37	16	20974997	20974997	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:20974997C>T	uc010vbe.1	-	53	10209	c.10209G>A	c.(10207-10209)CTG>CTA	p.L3403L	DNAH3_uc010vbd.1_Silent_p.L838L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3403					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGGGGTTATCCAGTGCGATGC	0.532													17	30					0	0	0.007413	0	0
DNAH3	55567	broad.mit.edu	37	16	20976069	20976069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:20976069C>T	uc010vbe.1	-	53	9137	c.9137G>A	c.(9136-9138)GGG>GAG	p.G3046E	DNAH3_uc010vbd.1_Missense_Mutation_p.G481E	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3046	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TATGGGATCCCCTAACGTGTG	0.517													14	27					0	0	0.002450	0	0
USP31	57478	broad.mit.edu	37	16	23117550	23117550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:23117550G>A	uc002dll.2	-	4	937	c.937C>T	c.(937-939)CCT>TCT	p.P313S		NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	313					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		TGGGGCAGAGGAATTGGCAAA	0.393													17	32					0	0	0.001216	0	0
AQP8	343	broad.mit.edu	37	16	25239795	25239795	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:25239795C>T	uc002doc.2	+	6	850	c.768C>T	c.(766-768)CTC>CTT	p.L256L		NM_001169	NP_001160	O94778	AQP8_HUMAN	aquaporin 8	256	Cytoplasmic (Potential).				cellular response to cAMP	integral to plasma membrane	water channel activity			upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	3				GBM - Glioblastoma multiforme(48;0.044)		AGACCCGCCTCATCCTGAAGG	0.582													47	32					0	0	0.003610	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25264281	25264281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:25264281G>A	uc002dod.3	-	3	1071	c.664C>T	c.(664-666)CCT>TCT	p.P222S	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.S14F|ZKSCAN2_uc002doe.2_Missense_Mutation_p.P222S	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	222					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		GACCCAGCAGGAAGCCGTGTG	0.323													36	166					0	0	0.006230	0	0
GTF3C1	2975	broad.mit.edu	37	16	27487825	27487825	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:27487825G>A	uc002dov.1	-	29	4340	c.4300C>T	c.(4300-4302)CAG>TAG	p.Q1434*	GTF3C1_uc002dou.2_Nonsense_Mutation_p.Q1434*	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1434						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						AGCGTGCTCTGGATCAGGTTC	0.607													20	28					0	0	0.001523	0	0
SBK1	388228	broad.mit.edu	37	16	28331720	28331720	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:28331720C>T	uc002dpd.2	+	4	1542	c.753C>T	c.(751-753)TTC>TTT	p.F251F		NM_001024401	NP_001019572	Q52WX2	SBK1_HUMAN	SH3-binding kinase 1	251	Protein kinase.					cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|kidney(1)	2						CCGGCAACTTCCCGTGGGAGG	0.736													21	36					0	0	0.003330	0	0
APOB48R	55911	broad.mit.edu	37	16	28509295	28509295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:28509295G>A	uc002dqb.1	+	3	2916	c.2906G>A	c.(2905-2907)GGT>GAT	p.G969D	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.G507D	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	969					cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCCAGAGGAGGTGCTGCCAAC	0.677													30	38					0	0	0.006230	0	0
SULT1A1	6817	broad.mit.edu	37	16	28618135	28618135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:28618135C>T	uc002dqi.2	-	5	1014	c.541G>A	c.(541-543)GAG>AAG	p.E181K	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.E181K|SULT1A1_uc002dqk.2_Missense_Mutation_p.E181K|SULT1A1_uc002dql.2_Missense_Mutation_p.E181K|SULT1A1_uc002dqm.2_Missense_Mutation_p.E103K|SULT1A1_uc002dqn.2_Missense_Mutation_p.E272K|SULT1A1_uc002dqo.2_Missense_Mutation_p.E181K|SULT1A1_uc002dqp.2_Missense_Mutation_p.E181K	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	181				E -> G (in Ref. 5; CAA59147).	3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						CGGCTCAGCTCCCACCACTCC	0.602													45	216					0	0	0.003610	0	0
RABEP2	79874	broad.mit.edu	37	16	28916731	28916731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:28916731G>A	uc002drq.2	-	12	1643	c.1595C>T	c.(1594-1596)TCC>TTC	p.S532F	uc010vct.1_Intron|RABEP2_uc010vdf.1_Missense_Mutation_p.S461F|RABEP2_uc010byn.2_Missense_Mutation_p.S496F	NM_024816	NP_079092	Q9H5N1	RABE2_HUMAN	rabaptin, RAB GTPase binding effector protein 2	532					endocytosis|protein transport	early endosome	growth factor activity|GTPase activator activity			ovary(1)|breast(1)|skin(1)	3						CAGGGCCTGGGACAGTCGCAC	0.647													15	7					0	0	0.004990	0	0
MVP	9961	broad.mit.edu	37	16	29841919	29841919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:29841919C>T	uc002dui.2	+	2	133	c.49C>T	c.(49-51)CAT>TAT	p.H17Y	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|MVP_uc010bzh.1_RNA|MVP_uc010vdz.1_RNA|MVP_uc002duj.2_Missense_Mutation_p.H17Y|MVP_uc010vea.1_5'Flank	NM_005115	NP_005106	Q14764	MVP_HUMAN	major vault protein	17	MVP 1.				mRNA transport|protein transport|response to drug|transmembrane transport	cytoplasm|nuclear pore|ribonucleoprotein complex	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CCACTATATCCATGTGCTGGA	0.577													34	55					0	0	0.007835	0	0
SRCAP	10847	broad.mit.edu	37	16	30727693	30727693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:30727693C>T	uc002dze.1	+	18	3095	c.2710C>T	c.(2710-2712)CCA>TCA	p.P904S	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P761S|SRCAP_uc010bzz.1_Missense_Mutation_p.P474S	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	904					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			TTGCAATCATCCAAATCTGTT	0.502													129	287					0	0	0.003610	0	0
SRCAP	10847	broad.mit.edu	37	16	30750429	30750429	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:30750429C>T	uc002dze.1	+	34	9453	c.9068C>T	c.(9067-9069)CCC>CTC	p.P3023L	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.P2818L	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	3023	Pro-rich.				interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AGCCAGCTCCCCGTCTTGGAC	0.607													37	34					0	0	0.006230	0	0
SETD1A	9739	broad.mit.edu	37	16	30977223	30977223	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:30977223G>C	uc002ead.1	+	8	2707	c.2021G>C	c.(2020-2022)GGA>GCA	p.G674A		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	674					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GCTCAGTGGGGAGGGATGCCC	0.632													42	104					0	0	0.002522	0	0
SETD1A	9739	broad.mit.edu	37	16	30977225	30977225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:30977225G>A	uc002ead.1	+	8	2709	c.2023G>A	c.(2023-2025)GGG>AGG	p.G675R		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	675					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						TCAGTGGGGAGGGATGCCCAT	0.632													42	107					0	0	0.002522	0	0
PRSS36	146547	broad.mit.edu	37	16	31151832	31151832	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:31151832C>T	uc002ebd.2	-	13	2207	c.2148G>A	c.(2146-2148)TGG>TGA	p.W716*	PRSS36_uc010vff.1_Nonsense_Mutation_p.W491*|PRSS36_uc010vfg.1_Nonsense_Mutation_p.W711*|PRSS36_uc010vfh.1_Intron	NM_173502	NP_775773	Q5K4E3	POLS2_HUMAN	protease, serine, 36 precursor	716	Peptidase S1 3.				proteolysis	cytoplasm|proteinaceous extracellular matrix	serine-type endopeptidase activity			ovary(1)	1						GGGGTTCTTTCCAGCCCAACA	0.667													12	33					0	0	0.000978	0	0
HERC2P4	440362	broad.mit.edu	37	16	32163581	32163581	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:32163581C>T	uc002ecx.2	-	2		c.190G>A				NR_002827				Homo sapiens hect domain and RLD 2 pseudogene 4, mRNA (cDNA clone IMAGE:5416019).												0						AGGCGACCATCGATGCCTCCA	0.587													5	19					0	0	0.001168	0	0
HEATR3	55027	broad.mit.edu	37	16	50118190	50118190	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:50118190C>T	uc002efw.2	+	9	1440	c.1278C>T	c.(1276-1278)CTC>CTT	p.L426L	HEATR3_uc002efx.2_Silent_p.L340L	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	426							binding			ovary(1)|skin(1)	2						CCAACTACCTCATCCCAAAGA	0.473													19	4					0	0	0.001882	0	0
CYLD	1540	broad.mit.edu	37	16	50826577	50826577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:50826577C>T	uc002egp.1	+	16	2726	c.2311C>T	c.(2311-2313)CCT>TCT	p.P771S	CYLD_uc010cbs.1_Missense_Mutation_p.P768S|CYLD_uc002egq.1_Missense_Mutation_p.P768S|CYLD_uc002egr.1_Missense_Mutation_p.P768S	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	771					cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				AAAAATTTTTCCTTCTCTGGA	0.264			Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				6	1					0	0	0.001168	0	0
RBL2	5934	broad.mit.edu	37	16	53496484	53496484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:53496484C>T	uc002ehi.3	+	11	1595	c.1477C>T	c.(1477-1479)CGT>TGT	p.R493C	RBL2_uc010vgv.1_Missense_Mutation_p.R419C|RBL2_uc002ehj.2_Missense_Mutation_p.R203C|RBL2_uc010vgw.1_Missense_Mutation_p.R277C	NM_005611	NP_005602	Q08999	RBL2_HUMAN	retinoblastoma-like 2 (p130)	493	Domain A.|Pocket; binds E1A.				cell cycle|chromatin modification|regulation of cell cycle|regulation of lipid kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						CAAACATTTTCGTTTTGCGGA	0.338													119	36					0	0	0.003610	0	0
RSPRY1	89970	broad.mit.edu	37	16	57272875	57272875	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:57272875T>C	uc002elb.2	+	15	1997	c.1719T>C	c.(1717-1719)TCT>TCC	p.S573S	RSPRY1_uc002elc.2_Silent_p.S573S|RSPRY1_uc002eld.2_Silent_p.S573S	NM_133368	NP_588609	Q96DX4	RSPRY_HUMAN	ring finger and SPRY domain containing 1	573						extracellular region	zinc ion binding			ovary(1)	1						GACAGATTTCTCATATTTCAT	0.398													28	7					0	0	0.004656	0	0
CENPT	80152	broad.mit.edu	37	16	67865711	67865711	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:67865711G>A	uc002eun.3	-	8	1018	c.469C>T	c.(469-471)CTG>TTG	p.L157L	CENPT_uc002eum.3_Silent_p.L157L|CENPT_uc010vkc.1_Intron|CENPT_uc010vkd.1_5'UTR|CENPT_uc010vke.1_Silent_p.L54L	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	157					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		GACAGTCTCAGCCTCTGTTTC	0.597													12	10					0	0	0.000978	0	0
DDX28	55794	broad.mit.edu	37	16	68055780	68055780	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:68055780G>A	uc002evh.1	-	1	2180	c.1326C>T	c.(1324-1326)TCC>TCT	p.S442S	DUS2L_uc002evi.2_5'Flank|DUS2L_uc002evj.2_5'Flank|DUS2L_uc010vkk.1_5'Flank	NM_018380	NP_060850	Q9NUL7	DDX28_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	442	Helicase C-terminal.					mitochondrial nucleoid|nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0116)|Epithelial(162;0.0474)|all cancers(182;0.233)		TCTTCTGGAAGGACTGGAAGA	0.517													19	9					0	0	0.001216	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													2	9					0	0	0.004672	0	0
HYDIN	54768	broad.mit.edu	37	16	70928360	70928360	+	Silent	SNP	G	A	A	rs78212832		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:70928360G>A	uc002ezr.2	-	55	9365	c.9237C>T	c.(9235-9237)ATC>ATT	p.I3079I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3080										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ACCTGAACGCGATCTCATATT	0.522													9	14					0	0	0.003163	0	0
HYDIN	54768	broad.mit.edu	37	16	71218876	71218876	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:71218876G>A	uc002ezr.2	-	3	281	c.153C>T	c.(151-153)TTC>TTT	p.F51F	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Silent_p.F51F|HYDIN_uc010vmc.1_Silent_p.F68F|HYDIN_uc010vmd.1_Silent_p.F78F|HYDIN_uc002ezw.3_Silent_p.F68F	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	51										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TTTCCTTCAGGAACTCTGAGG	0.403													13	5					0	0	0.001368	0	0
FTSJD1	55783	broad.mit.edu	37	16	71318296	71318296	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:71318296A>T	uc010cga.2	-	3	1934	c.1528T>A	c.(1528-1530)TTT>ATT	p.F510I	FTSJD1_uc002ezy.3_Missense_Mutation_p.F510I|FTSJD1_uc002ezz.3_Missense_Mutation_p.F510I	NM_001099642	NP_001093112	Q8IYT2	FTSJ1_HUMAN	FtsJ methyltransferase domain containing 1	510						integral to membrane	methyltransferase activity|nucleic acid binding			skin(1)	1						CCATTGCAAAAAGGAGAACAT	0.358													17	13					0	0	0.004007	0	0
CALB2	794	broad.mit.edu	37	16	71418266	71418266	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:71418266C>T	uc002faa.3	+	8	628	c.558C>T	c.(556-558)TTC>TTT	p.F186F	CALB2_uc010vme.1_Intron|CALB2_uc002fac.3_Intron	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	186	EF-hand 4.						calcium ion binding				0		Ovarian(137;0.125)				AGGAAAACTTCCTGCTTAAAT	0.542													19	18					0	0	0.002299	0	0
NUDT7	283927	broad.mit.edu	37	16	77769830	77769830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:77769830C>T	uc010chd.2	+	3	364	c.295C>T	c.(295-297)CTC>TTC	p.L99F	NUDT7_uc010vnj.1_Intron	NM_001105663	NP_001099133	P0C024	NUDT7_HUMAN	nudix motif 7	99	Nudix hydrolase.				nucleoside diphosphate metabolic process	peroxisome	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|magnesium ion binding|manganese ion binding			ovary(1)|kidney(1)	2						GGAAGTGGGTCTCCGTCCTCA	0.572													22	10					0	0	0.001523	0	0
VAT1L	57687	broad.mit.edu	37	16	77859317	77859317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:77859317G>A	uc002ffg.1	+	3	635	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	180							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						CAACCTCCGGGAAGGGATGTC	0.522													7	1					0	0	0.001984	0	0
ACSF3	197322	broad.mit.edu	37	16	89187307	89187307	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr16:89187307G>A	uc002fmp.2	+	7	1565	c.1225G>A	c.(1225-1227)GAG>AAG	p.E409K	ACSF3_uc010cig.1_Missense_Mutation_p.E409K|ACSF3_uc010cih.1_Missense_Mutation_p.E144K|ACSF3_uc002fmq.1_RNA|ACSF3_uc010cii.1_RNA|ACSF3_uc002fmr.1_Missense_Mutation_p.E144K	NM_174917	NP_777577	Q4G176	ACSF3_HUMAN	acyl-CoA synthetase family member 3 precursor	409					fatty acid metabolic process	mitochondrion	acid-thiol ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0281)		AGAGGGAGACGAGAGGGGGAC	0.617													45	21					0	0	0.002852	0	0
OR1A1	8383	broad.mit.edu	37	17	3119596	3119596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:3119596C>T	uc010vrc.1	+	1	682	c.682C>T	c.(682-684)CCT>TCT	p.P228S		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTTCCAGGTTCCTTCCACCAA	0.493													59	21					0	0	0.003610	0	0
PELP1	27043	broad.mit.edu	37	17	4577955	4577955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:4577955G>A	uc002fyi.3	-	13	1658	c.1432C>T	c.(1432-1434)CCG>TCG	p.P478S	PELP1_uc010vsf.1_Missense_Mutation_p.P331S	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	478					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						CTCCCCCGCGGGCTACGCAGC	0.582													12	4					0	0	0.001855	0	0
PELP1	27043	broad.mit.edu	37	17	4578163	4578163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:4578163C>T	uc002fyi.3	-	12	1589	c.1363G>A	c.(1363-1365)GGA>AGA	p.G455R	PELP1_uc010vsf.1_Missense_Mutation_p.G308R	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	455					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						AGGGCCTCTCCAGAGGCTCCT	0.612													53	8					0	0	0.003610	0	0
KIF1C	10749	broad.mit.edu	37	17	4926845	4926845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:4926845C>T	uc002gan.1	+	23	3037	c.2711C>T	c.(2710-2712)CCC>CTC	p.P904L		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	904					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GAGGCAGCCCCCAGTGACCGC	0.657													16	26					0	0	0.004990	0	0
NLRP1	22861	broad.mit.edu	37	17	5461922	5461922	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:5461922C>T	uc002gci.2	-	4	2649	c.2094G>A	c.(2092-2094)AGG>AGA	p.R698R	NLRP1_uc002gcg.1_Silent_p.R698R|NLRP1_uc002gck.2_Silent_p.R698R|NLRP1_uc002gcj.2_Silent_p.R698R|NLRP1_uc002gcl.2_Silent_p.R698R|NLRP1_uc002gch.3_Silent_p.R698R|NLRP1_uc010clh.2_Silent_p.R698R	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	698					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GCATCAGGTTCCTCCCCTGAG	0.557													38	11					0	0	0.005524	0	0
FBXO39	162517	broad.mit.edu	37	17	6683216	6683216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:6683216C>T	uc010vtg.1	+	2	149	c.29C>T	c.(28-30)CCC>CTC	p.P10L		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	10										ovary(1)|skin(1)	2						CTGATCCAGCCCCAAGACCAG	0.537													20	5					0	0	0.001882	0	0
SLC16A11	162515	broad.mit.edu	37	17	6945875	6945875	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:6945875G>C	uc002gei.1	-	3	964	c.626C>G	c.(625-627)CCC>CGC	p.P209R		NM_153357	NP_699188	Q8NCK7	MOT11_HUMAN	solute carrier family 16, member 11	209	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)	1						GGCGCCACAGGGGGTGAGGTG	0.692													9	1					0	0	0.006214	0	0
DLG4	1742	broad.mit.edu	37	17	7106564	7106564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:7106564C>T	uc002get.3	-	9	1920	c.719G>A	c.(718-720)GGG>GAG	p.G240E	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Missense_Mutation_p.G137E|DLG4_uc010cly.2_Missense_Mutation_p.G194E|DLG4_uc010vto.1_Missense_Mutation_p.G237E|DLG4_uc002geu.2_Missense_Mutation_p.G194E	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	197	PDZ 2.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						GGCAGCACCCCCTTCGATGAT	0.547													27	27					0	0	0.006320	0	0
SENP3	26168	broad.mit.edu	37	17	7468318	7468318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:7468318C>T	uc002ghm.2	+	4	1271	c.998C>T	c.(997-999)CCC>CTC	p.P333L	EIF4A1_uc002gho.1_5'UTR|SENP3_uc002ghn.1_Missense_Mutation_p.P168L	NM_015670	NP_056485	Q9H4L4	SENP3_HUMAN	SUMO1/sentrin/SMT3 specific protease 3	333					proteolysis	MLL1 complex|nucleolus	cysteine-type peptidase activity			ovary(1)|central_nervous_system(1)	2		Prostate(122;0.157)				AGCCTCATACCCCTCAGCACT	0.542													16	5					0	0	0.001216	0	0
TP53	7157	broad.mit.edu	37	17	7578212	7578212	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:7578212G>A	uc002gim.2	-	6	831	c.637C>T	c.(637-639)CGA>TGA	p.R213*	TP53_uc002gig.1_Nonsense_Mutation_p.R213*|TP53_uc002gih.2_Nonsense_Mutation_p.R213*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.R81*|TP53_uc010cng.1_Nonsense_Mutation_p.R81*|TP53_uc002gii.1_Nonsense_Mutation_p.R81*|TP53_uc010cnh.1_Nonsense_Mutation_p.R213*|TP53_uc010cni.1_Nonsense_Mutation_p.R213*|TP53_uc002gij.2_Nonsense_Mutation_p.R213*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.R120*|TP53_uc002gio.2_Nonsense_Mutation_p.R81*|TP53_uc010vug.1_Nonsense_Mutation_p.R174*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	213	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in sporadic cancers; somatic mutation).|R -> W (in sporadic cancers; somatic mutation).|R -> Q (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R213*(186)|p.R213L(25)|p.R213Q(22)|p.R213fs*34(10)|p.0?(7)|p.R213P(5)|p.R81*(2)|p.R120*(2)|p.R213G(2)|p.K164_P219del(1)|p.D208_V216delDRNTFRHSV(1)|p.D207_R213delDDRNTFR(1)|p.T211_S215delTFRHS(1)|p.R213*33(1)|p.D208fs*1(1)|p.R213>L(1)|p.R209_R213delRNTFR(1)|p.R213fs*2(1)|p.T211fs*28(1)|p.R213_S215>X(1)|p.D207_V216del10(1)|p.R213R(1)|p.R213fs*32(1)|p.R209fs*6(1)|p.R213W(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		ACACTATGTCGAAAAGTGTTT	0.532		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			31	9					0	0	0.002096	0	0
PER1	5187	broad.mit.edu	37	17	8051348	8051349	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:8051348_8051349CC>TT	uc002gkd.2	-	10	1438_1439	c.1200_1201GG>AA	c.(1198-1203)GAGGAC>GAAAAC	p.D401N	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Missense_Mutation_p.D385N	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	401	PAS 2.				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						AGGGGTCGGTCCTCAGGATGCA	0.639			T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					17	3					0	0	0.004672	0	0
MYH10	4628	broad.mit.edu	37	17	8397081	8397081	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:8397081C>T	uc002gll.2	-	30	4182	c.4086G>A	c.(4084-4086)CTG>CTA	p.L1362L	MYH10_uc002glm.2_Silent_p.L1393L|MYH10_uc010cnx.2_Silent_p.L1371L	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	1362	Potential.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						CTTGCTTCTCCAGGTTCTTCC	0.607													37	7					0	0	0.004289	0	0
MYH8	4626	broad.mit.edu	37	17	10297626	10297626	+	Silent	SNP	C	T	T	rs140525529		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:10297626C>T	uc002gmm.2	-	35	5201	c.5106G>A	c.(5104-5106)AGG>AGA	p.R1702R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1702	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle	p.R1702R(1)		skin(6)|ovary(3)|breast(2)	11						CGGCGATTTTCCTGCTTCTCT	0.567									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				53	11					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10356210	10356210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:10356210C>T	uc002gmn.2	-	25	3262	c.3151G>A	c.(3151-3153)GAC>AAC	p.D1051N	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1051	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTTTCTAAGTCCATGCAAAGT	0.373													61	15					0	0	0.003610	0	0
MYH4	4622	broad.mit.edu	37	17	10358010	10358010	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:10358010C>T	uc002gmn.2	-	22	2664	c.2553G>A	c.(2551-2553)AAG>AAA	p.K851K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	851	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGCCATCTCCTTCTCTGTCT	0.443													50	19					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11597718	11597718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:11597718C>T	uc002gne.2	+	22	4894	c.4826C>T	c.(4825-4827)TCC>TTC	p.S1609F	DNAH9_uc010coo.2_Missense_Mutation_p.S903F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1609	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TTTCTCTCCTCCTCCGATCTG	0.557													28	7					0	0	0.004656	0	0
DNAH9	1770	broad.mit.edu	37	17	11687708	11687708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:11687708G>A	uc002gne.2	+	41	7981	c.7913G>A	c.(7912-7914)GGA>GAA	p.G2638E	DNAH9_uc010coo.2_Missense_Mutation_p.G1932E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2638	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CTGAAGCTCGGAAACTTCCCG	0.562													85	22					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11725780	11725780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:11725780G>A	uc002gne.2	+	47	8944	c.8876G>A	c.(8875-8877)GGA>GAA	p.G2959E	DNAH9_uc010coo.2_Missense_Mutation_p.G2253E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2959	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCCCCTGTGGGAAACAAGCTA	0.542													62	18					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11778370	11778370	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:11778370C>T	uc002gne.2	+	53	10415	c.10347C>T	c.(10345-10347)TCC>TCT	p.S3449S	DNAH9_uc010coo.2_Silent_p.S2743S	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3449	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACCGCATGTCCGTGGAGAATG	0.557													29	24					0	0	0.005443	0	0
DNAH9	1770	broad.mit.edu	37	17	11778373	11778373	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:11778373G>A	uc002gne.2	+	53	10418	c.10350G>A	c.(10348-10350)GTG>GTA	p.V3450V	DNAH9_uc010coo.2_Silent_p.V2744V	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3450	AAA 5 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GCATGTCCGTGGAGAATGCCA	0.552													26	25					0	0	0.003954	0	0
ZNF624	57547	broad.mit.edu	37	17	16527671	16527671	+	Silent	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:16527671T>G	uc010cpi.1	-	6	612	c.529A>C	c.(529-531)AGA>CGA	p.R177R		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TTTTGTAATCTCAATATCCTA	0.358													53	9					0	0	0.003610	0	0
ULK2	9706	broad.mit.edu	37	17	19684407	19684407	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:19684407G>T	uc002gwm.3	-	24	3159	c.2650C>A	c.(2650-2652)CAG>AAG	p.Q884K	ULK2_uc002gwn.2_Missense_Mutation_p.Q884K	NM_001142610	NP_001136082	Q8IYT8	ULK2_HUMAN	unc-51-like kinase 2	884					signal transduction		ATP binding|protein binding|protein serine/threonine kinase activity			skin(2)|large_intestine(1)|stomach(1)	4	all_cancers(12;4.97e-05)|all_epithelial(12;0.00362)|Breast(13;0.186)					AACACCAGCTGCTCCACCCGC	0.502													6	3					0.000157383	0.000198186	0.003080	1	0
KCNJ12	3768	broad.mit.edu	37	17	21318795	21318795	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:21318795C>T	uc002gyv.1	+	3	846	c.141C>T	c.(139-141)GTC>GTT	p.V47V		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	47	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	ACCGCTTCGTCAAGAAGAATG	0.617										Prostate(3;0.18)			8	28					0	0	0.003080	0	0
KCNJ12	3768	broad.mit.edu	37	17	21318927	21318927	+	Silent	SNP	C	T	T	rs142326096		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:21318927C>T	uc002gyv.1	+	3	978	c.273C>T	c.(271-273)TTC>TTT	p.F91F		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	91	Helical; Name=M1; (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CGCTGGCCTTCCTTGCCTCCT	0.622										Prostate(3;0.18)			11	23					0	0	0.001855	0	0
LGALS9	3965	broad.mit.edu	37	17	25974437	25974437	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:25974437C>T	uc002gzp.2	+	10	1018	c.900C>T	c.(898-900)TTC>TTT	p.F300F	LGALS9_uc002gzq.2_Silent_p.F268F|LGALS9_uc002gzr.2_Silent_p.F211F|LGALS9_uc010waa.1_Intron|LGALS9_uc002gzs.2_Intron	NM_009587	NP_033665	O00182	LEG9_HUMAN	galectin-9 isoform long	300	Galectin 2.				positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	galactose binding|signal transducer activity				0	Lung NSC(42;0.0103)		BRCA - Breast invasive adenocarcinoma(3;0.0141)	UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		AAATGCCCTTCGTCCGTGGCC	0.587													37	1					0	0	0.006230	0	0
SARM1	23098	broad.mit.edu	37	17	26687783	26687783	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:26687783C>T	uc010wah.1	+	5	451	c.444C>T	c.(442-444)ATC>ATT	p.I148I	TMEM199_uc002hba.2_Silent_p.I148I	NM_152464	NP_689677	Q6SZW1	SARM1_HUMAN	transmembrane protein 199	Error:Variant_position_missing_in_Q6SZW1_after_alignment					innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		CTCTGGTCATCACCATCTTCA	0.493													84	10					0	0	0.003610	0	0
SLC13A2	9058	broad.mit.edu	37	17	26817514	26817514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:26817514G>A	uc002hbh.2	+	3	341	c.274G>A	c.(274-276)GGG>AGG	p.G92R	SLC13A2_uc010wal.1_Missense_Mutation_p.G49R|SLC13A2_uc010wam.1_Missense_Mutation_p.G48R|SLC13A2_uc010wan.1_Missense_Mutation_p.G141R|SLC13A2_uc010wao.1_Missense_Mutation_p.G49R|SLC13A2_uc002hbi.2_Missense_Mutation_p.G21R	NM_003984	NP_003975	Q13183	S13A2_HUMAN	solute carrier family 13, member 2 isoform b	92	Helical; (Potential).					integral to plasma membrane|membrane fraction	low affinity sodium:dicarboxylate symporter activity				0	all_lung(13;0.000871)|Lung NSC(42;0.0027)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)	Succinic acid(DB00139)	CCTGTTCTTCGGGGGGCTGCT	0.637													115	17					0	0	0.003610	0	0
PIGS	94005	broad.mit.edu	37	17	26887181	26887181	+	Silent	SNP	G	A	A	rs35420088		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:26887181G>A	uc002hbo.2	-	7	1078	c.705C>T	c.(703-705)AAC>AAT	p.N235N	PIGS_uc002hbn.2_Silent_p.N227N|PIGS_uc010wap.1_Silent_p.N174N	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	235	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					TGGGGTCTGGGTTGAGTAAAC	0.547													45	4					0	0	0.003610	0	0
LIG3	3980	broad.mit.edu	37	17	33310059	33310059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:33310059C>T	uc002hik.1	+	2	143	c.35C>T	c.(34-36)ACC>ATC	p.T12I	LIG3_uc002hii.2_Missense_Mutation_p.T12I|LIG3_uc002hij.2_Missense_Mutation_p.T12I|LIG3_uc010cth.1_Missense_Mutation_p.T21I	NM_013975	NP_039269	P49916	DNLI3_HUMAN	ligase III, DNA, ATP-dependent isoform alpha	12					base-excision repair|cell division|DNA ligation involved in DNA repair|DNA replication|reciprocal meiotic recombination|spermatogenesis	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|protein binding|zinc ion binding			skin(3)|lung(2)|ovary(2)|large_intestine(1)|pancreas(1)	9		Ovarian(249;0.17)			Bleomycin(DB00290)	TTTCCACAAACCCTCCGTGCA	0.413								Other_BER_factors					41	8					0	0	0.002522	0	0
DDX52	11056	broad.mit.edu	37	17	35993378	35993378	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:35993378T>C	uc002hoi.1	-	3	395	c.357A>G	c.(355-357)AAA>AAG	p.K119K	DDX52_uc002hoh.1_Silent_p.K11K|DDX52_uc002hoj.1_Silent_p.K27K	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	119						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				TCTGAACTTTTTTGTCTTCAA	0.303													88	10					0	0	0.003610	0	0
PIP4K2B	8396	broad.mit.edu	37	17	36943146	36943146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:36943146G>A	uc002hqs.2	-	2	668	c.187C>T	c.(187-189)CCT>TCT	p.P63S	PIP4K2B_uc010wdt.1_Missense_Mutation_p.P63S|PIP4K2B_uc010wdu.1_5'UTR	NM_003559	NP_003550	P78356	PI42B_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	63	PIPK.				cell surface receptor linked signaling pathway	endoplasmic reticulum membrane|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding|receptor signaling protein activity			ovary(1)	1						AGCATGACAGGAACAGGAACA	0.463													115	18					0	0	0.003610	0	0
IKZF3	22806	broad.mit.edu	37	17	37922397	37922397	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:37922397G>A	uc002hsu.2	-	8	1238	c.1176C>T	c.(1174-1176)AAC>AAT	p.N392N	IKZF3_uc002htd.2_Silent_p.N358N|IKZF3_uc010cwd.2_Silent_p.N249N|IKZF3_uc002hsv.2_Silent_p.N319N|IKZF3_uc010cwe.2_Silent_p.N258N|IKZF3_uc010cwf.2_Silent_p.N210N|IKZF3_uc010cwg.2_Silent_p.N171N|IKZF3_uc002hsw.2_Silent_p.N353N|IKZF3_uc002hsx.2_Silent_p.N336N|IKZF3_uc002hsy.2_Silent_p.N353N|IKZF3_uc002hsz.2_Silent_p.N297N|IKZF3_uc002hta.2_Silent_p.N314N|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Silent_p.N305N|IKZF3_uc002htc.2_Silent_p.N145N|IKZF3_uc010wel.1_Silent_p.N145N	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	392					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GTTCTTCATGGTTGCTGTCAG	0.532													117	23					0	0	0.003610	0	0
GSDMA	284110	broad.mit.edu	37	17	38121985	38121985	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:38121985A>G	uc002htl.1	+	2	163	c.45A>G	c.(43-45)CTA>CTG	p.L15L	GSDMA_uc002htm.1_Silent_p.L15L	NM_178171	NP_835465	Q96QA5	GSDMA_HUMAN	gasdermin 1	15					apoptosis|induction of apoptosis	perinuclear region of cytoplasm					0						CCAGACAGCTAAACCCTCGAG	0.572													15	2					0	0	0.004990	0	0
MED24	9862	broad.mit.edu	37	17	38209599	38209599	+	Silent	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:38209599G>T	uc002htt.2	-	3	478	c.165C>A	c.(163-165)TCC>TCA	p.S55S	MED24_uc010wet.1_RNA|MED24_uc002hts.2_Silent_p.S80S|MED24_uc002htu.2_Silent_p.S55S|MED24_uc010cwn.2_Silent_p.S55S|MED24_uc010weu.1_5'UTR|MED24_uc010wev.1_Silent_p.S5S|MED24_uc010wew.1_Intron|MED24_uc010wex.1_5'UTR|MED24_uc010wfa.1_Silent_p.S5S|MED24_uc010wfb.1_Silent_p.S80S|MED24_uc010wfc.1_Silent_p.S5S	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1	55					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					GAGGATTGGGGGATGGTCCAA	0.473													115	15					4.64599e-62	5.92172e-62	0.003610	1	0
TNS4	84951	broad.mit.edu	37	17	38645137	38645137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:38645137G>A	uc010cxb.2	-	3	688	c.524C>T	c.(523-525)CCC>CTC	p.P175L		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	175	Ser-rich.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			GGAGCCGAAGGGCGGGGTGAC	0.612													98	12					0	0	0.003610	0	0
KRTAP4-4	84616	broad.mit.edu	37	17	39316570	39316570	+	Missense_Mutation	SNP	T	C	C	rs111563615		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:39316570T>C	uc002hwc.2	-	1	414	c.374A>G	c.(373-375)TAC>TGC	p.Y125C		NM_032524	NP_115913	Q9BYR3	KRA44_HUMAN	keratin associated protein 4.4	125	26 X 5 AA repeats of C-C-[GRQVCH]-[SPT]- [VSTQR].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			GGACACACAGTAGCTGGGGCA	0.667													4	64					0	0	0.000248	0	0
RAB5C	5878	broad.mit.edu	37	17	40282432	40282432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:40282432G>A	uc002hyz.2	-	3	406	c.89C>T	c.(88-90)TCT>TTT	p.S30F	RAB5C_uc002hza.2_Missense_Mutation_p.S30F|RAB5C_uc010cxx.2_Missense_Mutation_p.S63F|RAB5C_uc010cxy.2_Intron	NM_201434	NP_958842	P51148	RAB5C_HUMAN	RAB5C, member RAS oncogene family isoform a	30	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(1)|skin(1)	2		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		GCCTACCGCAGACTCCCCCAG	0.592													66	8					0	0	0.003610	0	0
PLEKHH3	79990	broad.mit.edu	37	17	40821485	40821485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:40821485C>T	uc002iau.2	-	12	2635	c.2168G>A	c.(2167-2169)AGG>AAG	p.R723K	PLEKHH3_uc010cyl.1_Intron|PLEKHH3_uc002iat.1_RNA|PLEKHH3_uc002iav.2_RNA|PLEKHH3_uc010cym.1_Missense_Mutation_p.R84K|PLEKHH3_uc002iaw.2_3'UTR	NM_024927	NP_079203	Q7Z736	PKHH3_HUMAN	pleckstrin homology domain containing, family H	723	FERM.				signal transduction	cytoskeleton				large_intestine(1)|ovary(1)	2		Breast(137;0.00116)		BRCA - Breast invasive adenocarcinoma(366;0.14)		CTCTCCCACCCTCAAGGCCAG	0.592													39	6					0	0	0.002222	0	0
LOC90586	90586	broad.mit.edu	37	17	41019673	41019673	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:41019673C>T	uc002ibw.1	+	1	512	c.378C>T	c.(376-378)ATC>ATT	p.I126I	LOC90586_uc002ibx.2_5'Flank	NR_002773				Homo sapiens amine oxidase pseudogene mRNA, splice variant HLAO1.												0						CACTGGCCATCGTCTTCTTTG	0.647													28	3					0	0	0.007291	0	0
VAT1	10493	broad.mit.edu	37	17	41174026	41174026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:41174026G>A	uc002icm.1	-	1	434	c.314C>T	c.(313-315)CCT>CTT	p.P105L	VAT1_uc010cyw.1_5'Flank|VAT1_uc010whk.1_Intron	NM_006373	NP_006364	Q99536	VAT1_HUMAN	vesicle amine transport protein 1	105						cytoplasm|integral to membrane	oxidoreductase activity|zinc ion binding				0		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.156)		GACAGGCAGAGGCGGGAGACG	0.617													23	1					0	0	0.001882	0	0
MPP3	4356	broad.mit.edu	37	17	41901338	41901338	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:41901338G>A	uc002iei.3	-	10	811	c.645C>T	c.(643-645)ATC>ATT	p.I215I	MPP3_uc002ieh.2_Silent_p.I240I|MPP3_uc002iej.2_RNA|MPP3_uc010czi.1_Silent_p.I215I|MPP3_uc010wik.1_Silent_p.I240I	NM_001932	NP_001923	Q13368	MPP3_HUMAN	palmitoylated membrane protein 3	215					signal transduction	cell surface|integral to plasma membrane	guanylate kinase activity			large_intestine(1)|skin(1)	2		Breast(137;0.00394)		BRCA - Breast invasive adenocarcinoma(366;0.119)		GGGTGGCTGGGATGATTTTTA	0.557													86	11					0	0	0.003610	0	0
CCDC43	124808	broad.mit.edu	37	17	42759460	42759460	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:42759460G>A	uc002ihc.2	-	3	383	c.339C>T	c.(337-339)ATC>ATT	p.I113I	CCDC43_uc010czw.1_Silent_p.I113I	NM_144609	NP_653210	Q96MW1	CCD43_HUMAN	coiled-coil domain containing 43 isoform 1	113											0		Prostate(33;0.0322)				GCTTTACTACGATTTGTGCCT	0.483													113	14					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	17	45127464	45127464	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:45127464G>A	uc010wkj.1	+	2	1016	c.662G>A	c.(661-663)GGG>GAG	p.G221E	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		CCTTCACAAGGGGCTTTTTCA	0.423													21	136					0	0	0.001512	0	0
CDC27	996	broad.mit.edu	37	17	45219678	45219678	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:45219678A>G	uc002ild.3	-	11	1422	c.1295T>C	c.(1294-1296)TTG>TCG	p.L432S	CDC27_uc002ile.3_Missense_Mutation_p.L438S|CDC27_uc002ilf.3_Missense_Mutation_p.L432S|CDC27_uc010wkp.1_Missense_Mutation_p.L371S|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	432					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						GGAAGAGTCCAATTTTGTAAT	0.343													3	20					0	0	0.004672	0	0
SPATA20	64847	broad.mit.edu	37	17	48626509	48626509	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:48626509G>T	uc002irf.2	+	5	715	c.574G>T	c.(574-576)GTC>TTC	p.V192F	SPATA20_uc002irc.2_5'UTR|SPATA20_uc002ire.2_Missense_Mutation_p.V148F|SPATA20_uc002ird.2_Missense_Mutation_p.V208F|SPATA20_uc010wmv.1_Missense_Mutation_p.V218F|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	192					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			CTTGACCCGAGTCGGCTTCCG	0.632													90	14					1.59803e-59	2.03583e-59	0.003610	1	0
SPATA20	64847	broad.mit.edu	37	17	48626511	48626511	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:48626511C>T	uc002irf.2	+	5	717	c.576C>T	c.(574-576)GTC>GTT	p.V192V	SPATA20_uc002irc.2_5'UTR|SPATA20_uc002ire.2_Silent_p.V148V|SPATA20_uc002ird.2_Silent_p.V208V|SPATA20_uc010wmv.1_Silent_p.V218V|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	192					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			TGACCCGAGTCGGCTTCCGCA	0.637													90	14					0	0	0.003610	0	0
CACNA1G	8913	broad.mit.edu	37	17	48678508	48678508	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:48678508G>A	uc002irk.1	+	19	4260	c.3888G>A	c.(3886-3888)GAG>GAA	p.E1296E	CACNA1G_uc002iri.1_Silent_p.E1296E|CACNA1G_uc002irj.1_Silent_p.E1273E|CACNA1G_uc002irl.1_Silent_p.E1273E|CACNA1G_uc002irm.1_Silent_p.E1273E|CACNA1G_uc002irn.1_Silent_p.E1273E|CACNA1G_uc002iro.1_Silent_p.E1273E|CACNA1G_uc002irp.1_Silent_p.E1296E|CACNA1G_uc002irq.1_Silent_p.E1273E|CACNA1G_uc002irr.1_Silent_p.E1296E|CACNA1G_uc002irs.1_Silent_p.E1296E|CACNA1G_uc002irt.1_Silent_p.E1296E|CACNA1G_uc002irv.1_Silent_p.E1296E|CACNA1G_uc002irw.1_Silent_p.E1273E|CACNA1G_uc002iru.1_Silent_p.E1273E|CACNA1G_uc002irx.1_Silent_p.E1209E|CACNA1G_uc002iry.1_Silent_p.E1209E|CACNA1G_uc002irz.1_Silent_p.E1209E|CACNA1G_uc002isa.1_Silent_p.E1209E|CACNA1G_uc002isb.1_Silent_p.E1209E|CACNA1G_uc002isc.1_Silent_p.E1209E|CACNA1G_uc002isd.1_Silent_p.E1209E|CACNA1G_uc002ise.1_Silent_p.E1209E|CACNA1G_uc002isf.1_Silent_p.E1209E|CACNA1G_uc002isg.1_Silent_p.E1209E|CACNA1G_uc002ish.1_Silent_p.E1209E|CACNA1G_uc002isi.1_Silent_p.E1186E|CACNA1G_uc002isj.2_Silent_p.E20E	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1296	Extracellular (Potential).|III.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	TCGCCATGGAGCGCCCCAAAA	0.592													70	10					0	0	0.003610	0	0
OR4D1	26689	broad.mit.edu	37	17	56232809	56232809	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:56232809G>A	uc010wno.1	+	1	295	c.295G>A	c.(295-297)GCC>ACC	p.A99T	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GGGCTGCATGGCCCAGATCTT	0.527													133	19					0	0	0.003610	0	0
DHX40	79665	broad.mit.edu	37	17	57682846	57682846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:57682846C>T	uc002ixn.1	+	17	2158	c.2011C>T	c.(2011-2013)CAT>TAT	p.H671Y	DHX40_uc010woe.1_Missense_Mutation_p.H594Y|DHX40_uc010wof.1_Missense_Mutation_p.H186Y	NM_024612	NP_078888	Q8IX18	DHX40_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 40	671							ATP binding|ATP-dependent helicase activity|nucleic acid binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					GATCATTTTTCATGAGGTATT	0.363													33	18					0	0	0.004878	0	0
MED13	9969	broad.mit.edu	37	17	60062045	60062045	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:60062045C>T	uc002izo.2	-	14	2735	c.2658G>A	c.(2656-2658)GAG>GAA	p.E886E		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	886					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						TACAGAATCCCTCATCAACCT	0.318													38	6					0	0	0.002852	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342280	60342280	+	RNA	SNP	C	T	T	rs80012429		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:60342280C>T	uc010woz.1	-	14		c.1849G>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TTAATACATTCTCATAAGTTT	0.488													9	122					0	0	0.002450	0	0
SCN4A	6329	broad.mit.edu	37	17	62049958	62049958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:62049958C>T	uc002jds.1	-	1	321	c.244G>A	c.(244-246)GAC>AAC	p.D82N		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	82					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GGATCCAGGTCCTCCAGGGGG	0.478													16	2					0	0	0.003163	0	0
AXIN2	8313	broad.mit.edu	37	17	63533929	63533929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:63533929G>A	uc002jfi.2	-	6	1514	c.1225C>T	c.(1225-1227)CTC>TTC	p.L409F	AXIN2_uc002jfh.2_Missense_Mutation_p.L409F	NM_004655	NP_004646	Q9Y2T1	AXIN2_HUMAN	axin 2	409	Interaction with GSK3B (By similarity).				cellular protein localization|cellular response to organic cyclic compound|dorsal/ventral axis specification|intramembranous ossification|maintenance of DNA repeat elements|mRNA stabilization|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of cell proliferation|negative regulation of osteoblast differentiation|odontogenesis|positive regulation of cell death|positive regulation of epithelial to mesenchymal transition|positive regulation of protein phosphorylation|regulation of centromeric sister chromatid cohesion|regulation of mismatch repair|Wnt receptor signaling pathway involved in somitogenesis	Axin-APC-beta-catenin-GSK3B complex|cell cortex|centrosome|cytoplasmic membrane-bounded vesicle|cytoplasmic microtubule|nucleus|plasma membrane|postsynaptic density	armadillo repeat domain binding|beta-catenin binding|GTPase activator activity|protein kinase binding|signal transducer activity|ubiquitin protein ligase binding			central_nervous_system(1)|skin(1)	2						TTGAGTGTGAGCTCGGAGCCC	0.617									Oligodontia_Ectodermal_Dysplasia_and_Colorectal_Polyp_syndrome				7	0					0	0	0.003080	0	0
ABCA8	10351	broad.mit.edu	37	17	66915539	66915539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:66915539G>A	uc002jhp.2	-	13	1870	c.1691C>T	c.(1690-1692)CCA>CTA	p.P564L	ABCA8_uc002jhq.2_Missense_Mutation_p.P564L|ABCA8_uc010wqq.1_Missense_Mutation_p.P564L|ABCA8_uc010wqr.1_Missense_Mutation_p.P503L|ABCA8_uc002jhr.2_Missense_Mutation_p.P564L	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	564	ABC transporter 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					ATTGGATTGTGGACAAACTCC	0.388													74	7					0	0	0.003610	0	0
ABCA6	23460	broad.mit.edu	37	17	67075194	67075194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:67075194C>T	uc002jhw.1	-	39	4949	c.4774G>A	c.(4774-4776)GAA>AAA	p.E1592K		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1592					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					ACTTCCTGTTCTTTAGAAAGC	0.348													28	5					0	0	0.004656	0	0
SDK2	54549	broad.mit.edu	37	17	71382048	71382048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:71382048C>T	uc010dfm.2	-	32	4507	c.4507G>A	c.(4507-4509)GAA>AAA	p.E1503K	SDK2_uc002jjt.3_Missense_Mutation_p.E662K|SDK2_uc010dfn.2_Missense_Mutation_p.E1182K	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1503	Extracellular (Potential).|Fibronectin type-III 10.				cell adhesion	integral to membrane				ovary(2)	2						GTGGGTGCTTCATCGGGGGCT	0.612													11	3					0	0	0.002450	0	0
C17orf77	146723	broad.mit.edu	37	17	72588211	72588211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:72588211C>T	uc002jla.1	+	3	388	c.26C>T	c.(25-27)TCC>TTC	p.S9F	CD300LD_uc002jkz.2_Intron	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	9						extracellular region					0						CTGTCATTTTCCCTGACATGT	0.468													67	131					0	0	0.003610	0	0
KIAA0195	9772	broad.mit.edu	37	17	73487804	73487804	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:73487804C>T	uc002jnz.3	+	14	1694	c.1419C>T	c.(1417-1419)TCC>TCT	p.S473S	KIAA0195_uc010wsa.1_Silent_p.S483S|KIAA0195_uc010wsb.1_Silent_p.S129S	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	473					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGGCTGGCTCCCTGAACAACA	0.622													48	106					0	0	0.003610	0	0
RECQL5	9400	broad.mit.edu	37	17	73658888	73658888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:73658888G>A	uc010dgl.2	-	4	598	c.442C>T	c.(442-444)CGC>TGC	p.R148C	RECQL5_uc010dgk.2_Missense_Mutation_p.R121C|RECQL5_uc002jpb.1_Missense_Mutation_p.R148C|RECQL5_uc002joz.3_Missense_Mutation_p.R148C|RECQL5_uc002jpa.3_Missense_Mutation_p.R148C	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	148	Helicase ATP-binding.				DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			AGCAGGTGGCGGGACACCAGG	0.567								Other_identified_genes_with_known_or_suspected_DNA_repair_function					85	193					0	0	0.003610	0	0
ITGB4	3691	broad.mit.edu	37	17	73739891	73739891	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:73739891G>A	uc002jpg.2	+	26	3247	c.3060G>A	c.(3058-3060)GGG>GGA	p.G1020G	ITGB4_uc002jph.2_Silent_p.G1020G|ITGB4_uc002jpi.3_Silent_p.G1020G|ITGB4_uc002jpj.2_Silent_p.G1020G	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1020	Cytoplasmic (Potential).|Calx-beta.				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGGACGGCGGGAAGTCCCAGG	0.701													10	17					0	0	0.000978	0	0
QRICH2	84074	broad.mit.edu	37	17	74274117	74274117	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:74274117G>A	uc002jrd.1	-	15	4752	c.4572C>T	c.(4570-4572)ATC>ATT	p.I1524I	QRICH2_uc010wsz.1_Intron|QRICH2_uc010dgw.1_Silent_p.I368I	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	1524							protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						GCAGCTCGCGGATTATCTGGC	0.642													81	69					0	0	0.003610	0	0
TMC6	11322	broad.mit.edu	37	17	76115085	76115085	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:76115085G>A	uc002juj.1	-	14	1980	c.1854C>T	c.(1852-1854)ATC>ATT	p.I618I	TMC6_uc002jui.1_Silent_p.I197I|TMC6_uc010dhf.1_Silent_p.I451I|TMC6_uc002juk.2_Silent_p.I618I|TMC6_uc010dhg.1_Intron|TMC6_uc002jul.1_Silent_p.I618I	NM_007267	NP_009198	Q7Z403	TMC6_HUMAN	transmembrane channel-like 6	618	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			GCAGCTTGATGATCTGCACGG	0.682									Epidermodysplasia_Verruciformis_Familial_Clustering_of				4	11					0	0	0.000602	0	0
DNAH17	8632	broad.mit.edu	37	17	76548882	76548882	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:76548882C>T	uc002jvv.1	-	11	1396	c.1290G>A	c.(1288-1290)AAG>AAA	p.K430K						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCACTATAGTCTTTATCTGAA	0.373													140	107					0	0	0.003610	0	0
ENGASE	64772	broad.mit.edu	37	17	77079573	77079573	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:77079573C>T	uc002jwv.2	+	9	1160	c.1152C>T	c.(1150-1152)GGC>GGT	p.G384G	ENGASE_uc002jww.2_Silent_p.G90G	NM_001042573	NP_001036038	Q8NFI3	ENASE_HUMAN	endo-beta-N-acetylglucosaminidase	384						cytosol	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity			skin(1)	1						GGTTCTGGGGCCGACTGGAGC	0.612													24	22					0	0	0.004656	0	0
TBC1D16	125058	broad.mit.edu	37	17	77915871	77915871	+	Silent	SNP	G	A	A	rs150703060	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:77915871G>A	uc002jxj.2	-	11	2159	c.2043C>T	c.(2041-2043)CTC>CTT	p.L681L	TBC1D16_uc002jxh.2_Silent_p.L319L|TBC1D16_uc002jxi.2_Silent_p.L306L	NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	681						intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			TCCGGAGAACGAGCTCCCCGT	0.657													14	30					0	0	0.004990	0	0
NPTX1	4884	broad.mit.edu	37	17	78449913	78449913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:78449913C>T	uc002jyp.1	-	1	492	c.334G>A	c.(334-336)GGC>AGC	p.G112S		NM_002522	NP_002513	Q15818	NPTX1_HUMAN	neuronal pentraxin I precursor	112					central nervous system development|synaptic transmission|transport	transport vesicle	metal ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			TTGCCCGAGCCGGGCTGCTTg	0.572													62	30					0	0	0.003610	0	0
AATK	9625	broad.mit.edu	37	17	79095360	79095360	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:79095360G>A	uc010dia.2	-	11	2456	c.2376C>T	c.(2374-2376)CCC>CCT	p.P792P	AATK_uc010dhz.2_RNA	NM_001080395	NP_001073864	Q6ZMQ8	LMTK1_HUMAN	apoptosis-associated tyrosine kinase	792	Pro-rich.					integral to membrane|mitochondrion|perinuclear region of cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(4)|ovary(2)|lung(2)|upper_aerodigestive_tract(1)	9	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GGGGCAGGCGGGGTCCGGTAG	0.692													12	19					0	0	0.002450	0	0
FSCN2	25794	broad.mit.edu	37	17	79495898	79495898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:79495898C>T	uc010wup.1	+	1	482	c.341C>T	c.(340-342)ACC>ATC	p.T114I	FSCN2_uc010wuo.1_Missense_Mutation_p.T114I	NM_012418	NP_036550	O14926	FSCN2_HUMAN	fascin 2 isoform 1	114					actin filament bundle assembly|anatomical structure morphogenesis|visual perception	actin cytoskeleton|cytoplasm|stereocilium	actin filament binding|protein binding, bridging				0	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			TTCGGAGGCACCGAGGACCAG	0.716													9	8					0	0	0.000673	0	0
PYCR1	5831	broad.mit.edu	37	17	79892616	79892616	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:79892616G>A	uc002kcr.1	-	5	824	c.546C>T	c.(544-546)TTC>TTT	p.F182F	PYCR1_uc002kcq.1_Silent_p.F182F|PYCR1_uc002kcp.2_Silent_p.F182F|PYCR1_uc002kcs.1_Silent_p.F182F|PYCR1_uc010wvd.1_Silent_p.F209F|PYCR1_uc002kct.1_Silent_p.F182F|PYCR1_uc002kcu.1_Intron|PYCR1_uc010wve.1_Intron	NM_006907	NP_008838	P32322	P5CR1_HUMAN	pyrroline-5-carboxylate reductase 1 isoform 1	182					cellular response to oxidative stress|proline biosynthetic process	mitochondrial matrix	binding|pyrroline-5-carboxylate reductase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)		L-Proline(DB00172)|NADH(DB00157)	CCAGGGCTGTGAATGCCTGTG	0.647													8	3					0	0	0.003080	0	0
NOTUM	147111	broad.mit.edu	37	17	79914536	79914536	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:79914536C>T	uc010wvg.1	-	8	1250	c.978G>A	c.(976-978)CCG>CCA	p.P326P		NM_178493	NP_848588	Q6P988	NOTUM_HUMAN	notum pectinacetylesterase homolog precursor	326						extracellular region	hydrolase activity				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			AGCGCAGGGTCGGGTAGACCT	0.632													19	47					0	0	0.001216	0	0
EMILIN2	84034	broad.mit.edu	37	18	2892118	2892118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:2892118C>T	uc002kln.2	+	4	2152	c.1993C>T	c.(1993-1995)CAT>TAT	p.H665Y		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	665					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		CCCCGTGGCTCATTGCTGCAG	0.592													26	11					0	0	0.004656	0	0
LAMA1	284217	broad.mit.edu	37	18	6971974	6971974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:6971974G>A	uc002knm.2	-	48	6875	c.6781C>T	c.(6781-6783)CCT>TCT	p.P2261S	LAMA1_uc010wzj.1_Missense_Mutation_p.P1737S	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2261	Laminin G-like 1.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCACAGCAGGAGATTTCTAA	0.413													11	4					0	0	0.001368	0	0
ROCK1	6093	broad.mit.edu	37	18	18629177	18629177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:18629177G>A	uc002kte.2	-	4	1231	c.290C>T	c.(289-291)TCC>TTC	p.S97F		NM_005406	NP_005397	Q13464	ROCK1_HUMAN	Rho-associated, coiled-coil containing protein	97	Protein kinase.				actin cytoskeleton organization|axon guidance|cellular component disassembly involved in apoptosis|cytokinesis|leukocyte tethering or rolling|membrane to membrane docking|Rho protein signal transduction	centriole|cytosol|Golgi membrane	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			lung(2)|breast(2)|central_nervous_system(1)	5	Melanoma(1;0.165)					CTTCCTGGTGGATTTATGCCT	0.328													39	14					0	0	0.002522	0	0
DSC2	1824	broad.mit.edu	37	18	28669479	28669479	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:28669479A>G	uc002kwl.3	-	5	1007	c.553T>C	c.(553-555)TTA>CTA	p.L185L	DSC2_uc002kwk.3_Silent_p.L185L	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	185	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			ACATAAAATAAATTCCGAGGT	0.378													9	5					0	0	0.006214	0	0
DSC1	1823	broad.mit.edu	37	18	28722066	28722066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:28722066G>A	uc002kwn.2	-	9	1418	c.1156C>T	c.(1156-1158)CCT>TCT	p.P386S	DSC1_uc002kwm.2_Missense_Mutation_p.P386S	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	386	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TTTGAGTGAGGAGTGTTTGGC	0.373													28	10					0	0	0.005443	0	0
DSG1	1828	broad.mit.edu	37	18	28923487	28923487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:28923487G>A	uc002kwp.2	+	12	1974	c.1762G>A	c.(1762-1764)GAA>AAA	p.E588K	DSG1_uc010xbp.1_5'Flank	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	588	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GCCTGTTCCCGAATGTTCAGA	0.488													37	11					0	0	0.003755	0	0
DSG1	1828	broad.mit.edu	37	18	28923508	28923508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:28923508C>T	uc002kwp.2	+	12	1995	c.1783C>T	c.(1783-1785)CAT>TAT	p.H595Y	DSG1_uc010xbp.1_5'Flank	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	595	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TGGAGCAATTCATTCATGGGC	0.473													36	12					0	0	0.002836	0	0
DSG4	147409	broad.mit.edu	37	18	28968867	28968867	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:28968867G>A	uc002kwq.2	+	5	538	c.403G>A	c.(403-405)GAA>AAA	p.E135K	DSG4_uc002kwr.2_Missense_Mutation_p.E135K	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	135	Cadherin 1.|Extracellular (Potential).		Missing (in LAH1).		homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TTCACGGGGTGAAGATTTAGA	0.388													27	6					0	0	0.007291	0	0
DSG4	147409	broad.mit.edu	37	18	28992947	28992947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:28992947C>T	uc002kwq.2	+	16	2647	c.2512C>T	c.(2512-2514)CCA>TCA	p.P838S	DSG4_uc002kwr.2_Missense_Mutation_p.P857S	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	838	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AACTTTAGATCCAAAATTTAG	0.438													27	14					0	0	0.005443	0	0
ASXL3	80816	broad.mit.edu	37	18	31326326	31326326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:31326326G>A	uc010dmg.1	+	12	6569	c.6514G>A	c.(6514-6516)GAA>AAA	p.E2172K	ASXL3_uc002kxq.2_Missense_Mutation_p.E1879K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATCTGCAATTGAAAAGTCCAT	0.483													46	24					0	0	0.003610	0	0
KATNAL2	83473	broad.mit.edu	37	18	44579378	44579378	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:44579378C>T	uc002lco.2	+	2	228	c.34C>T	c.(34-36)CAG>TAG	p.Q12*	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lcp.3_Intron	NM_031303	NP_112593	Q8IYT4	KATL2_HUMAN	katanin p60 subunit A-like 2	84						cytoplasm|microtubule	ATP binding|microtubule-severing ATPase activity			ovary(1)|skin(1)|central_nervous_system(1)|pancreas(1)	4						TGTAAAATTTCAGAAATACCC	0.333													39	14					0	0	0.001951	0	0
DYM	54808	broad.mit.edu	37	18	46860172	46860172	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:46860172G>A	uc002ldi.1	-	7	911	c.546C>T	c.(544-546)TTC>TTT	p.F182F	DYM_uc010xdf.1_Intron|DYM_uc002ldj.3_Silent_p.F4F	NM_017653	NP_060123	Q7RTS9	DYM_HUMAN	dymeclin	182						Golgi apparatus					0						GGCAGGAAAGGAAAACAACCA	0.358													22	10					0	0	0.002299	0	0
DCC	1630	broad.mit.edu	37	18	50866094	50866094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:50866094C>T	uc002lfe.1	+	15	2763	c.2176C>T	c.(2176-2178)CCT>TCT	p.P726S	DCC_uc010xdr.1_Missense_Mutation_p.P574S|DCC_uc010dpf.1_Missense_Mutation_p.P381S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	726	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		ATCTCAAGTTCCTGATCAACC	0.428													18	4					0	0	0.001523	0	0
DCC	1630	broad.mit.edu	37	18	50866129	50866129	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:50866129G>A	uc002lfe.1	+	15	2798	c.2211G>A	c.(2209-2211)CAG>CAA	p.Q737Q	DCC_uc010xdr.1_Silent_p.Q585Q|DCC_uc010dpf.1_Silent_p.Q392Q	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	737	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TGAGGCCCCAGACTAACTGCA	0.463													24	3					0	0	0.004656	0	0
SERPINB8	5271	broad.mit.edu	37	18	61654154	61654154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:61654154C>T	uc002ljv.2	+	7	936	c.767C>T	c.(766-768)TCA>TTA	p.S256L	SERPINB8_uc002lju.2_Missense_Mutation_p.S256L|SERPINB8_uc010xex.1_Missense_Mutation_p.S74L	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	256					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				TGGACAAATTCAGAAAAGTTG	0.373													58	19					0	0	0.003610	0	0
CDH7	1005	broad.mit.edu	37	18	63547653	63547653	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:63547653C>T	uc002ljz.2	+	12	2206	c.1881C>T	c.(1879-1881)ATC>ATT	p.I627I	CDH7_uc002lkb.2_Silent_p.I627I	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	627	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				TCCTCCTTATCGTCACTATGA	0.443													11	6					0	0	0.000978	0	0
TMX3	54495	broad.mit.edu	37	18	66364482	66364482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:66364482G>A	uc002lkf.2	-	8	686	c.551C>T	c.(550-552)TCA>TTA	p.S184L	TMX3_uc010xez.1_Missense_Mutation_p.S43L|TMX3_uc010xfa.1_Missense_Mutation_p.S157L|TMX3_uc002lkg.3_Missense_Mutation_p.S184L	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor	184	Lumenal (Potential).				cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						CACTTCTTCTGAGGCAGAAAA	0.219													16	3					0	0	0.001216	0	0
NETO1	81832	broad.mit.edu	37	18	70532132	70532132	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:70532132C>T	uc002lkw.2	-	3	415	c.131G>A	c.(130-132)TGG>TAG	p.W44*	NETO1_uc002lkx.1_Nonsense_Mutation_p.W43*|NETO1_uc002lky.1_Nonsense_Mutation_p.W44*|NETO1_uc002lkz.2_Nonsense_Mutation_p.W43*	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	44	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		ATGTTTTGTCCAAGTTCCACA	0.408													14	13					0	0	0.002450	0	0
ZNF407	55628	broad.mit.edu	37	18	72344766	72344766	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:72344766C>T	uc002llw.2	+	1	1848	c.1791C>T	c.(1789-1791)TCC>TCT	p.S597S	ZNF407_uc010xfc.1_Silent_p.S597S|ZNF407_uc010dqu.1_Silent_p.S597S|ZNF407_uc002llu.2_Silent_p.S596S	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	597					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CATTTATATCCTTGGATGAAA	0.378													58	22					0	0	0.003610	0	0
TSHZ1	10194	broad.mit.edu	37	18	73000553	73000553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:73000553C>T	uc002lly.2	+	2	3619	c.3056C>T	c.(3055-3057)CCC>CTC	p.P1019L		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	1064						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		GGCAAGTCTCCCGAGGACCAC	0.522													25	23					0	0	0.005443	0	0
SALL3	27164	broad.mit.edu	37	18	76754766	76754766	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr18:76754766G>A	uc002lmt.2	+	2	2775	c.2775G>A	c.(2773-2775)CCG>CCA	p.P925P	SALL3_uc010dra.2_Silent_p.P532P	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	925					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TGGGCGCCCCGGAGGAGCCCC	0.562													5	2					0	0	0.001168	0	0
HCN2	610	broad.mit.edu	37	19	603796	603796	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:603796C>T	uc002lpe.2	+	2	938	c.885C>T	c.(883-885)TTC>TTT	p.F295F		NM_001194	NP_001185	Q9UL51	HCN2_HUMAN	hyperpolarization activated cyclic	295	Helical; Name=Segment S3; (Potential).				cell-cell signaling|muscle contraction	voltage-gated potassium channel complex	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGTGGACTTCGTGTCCTCCA	0.567													14	74					0	0	0.002450	0	0
C19orf26	255057	broad.mit.edu	37	19	1231200	1231200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:1231200G>A	uc002lrm.2	-	9	1311	c.1036C>T	c.(1036-1038)CCC>TCC	p.P346S		NM_152769	NP_689982	Q8N350	DOS_HUMAN	downstream of Stk11	372						integral to membrane					0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTCCTGGGGGGCATCCCCC	0.711										HNSCC(14;0.022)			38	24					0	0	0.006230	0	0
APC2	10297	broad.mit.edu	37	19	1466440	1466440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:1466440C>T	uc002lsr.1	+	15	3348	c.3140C>T	c.(3139-3141)CCG>CTG	p.P1047L	APC2_uc002lss.1_Missense_Mutation_p.P629L|APC2_uc002lst.1_Missense_Mutation_p.P1047L|APC2_uc002lsu.1_Missense_Mutation_p.P1046L|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	1047					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGGCTGCCCCGCTGTCTGTG	0.697													11	10					0	0	0.002450	0	0
ZNF556	80032	broad.mit.edu	37	19	2877858	2877858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:2877858C>T	uc002lwp.1	+	4	989	c.902C>T	c.(901-903)TCC>TTC	p.S301F	ZNF556_uc002lwq.2_Missense_Mutation_p.S300F	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	301	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGGCAACATCCTTTCAACGA	0.507													11	29					0	0	0.000978	0	0
GNA11	2767	broad.mit.edu	37	19	3121120	3121120	+	Silent	SNP	C	T	T	rs140749796		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:3121120C>T	uc002lxd.2	+	7	1265	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	uc010xhe.1_5'Flank	NM_002067	NP_002058	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein),	341					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			eye(70)|skin(16)	86		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		GCTTCGTGTTCGCGGCCGTGA	0.592			Mis		uveal melanoma								8	16					0	0	0.003080	0	0
NFIC	4782	broad.mit.edu	37	19	3381876	3381876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:3381876C>T	uc010xhi.1	+	2	259	c.197C>T	c.(196-198)CCC>CTC	p.P66L	NFIC_uc002lxo.2_Missense_Mutation_p.P57L|NFIC_uc010xhh.1_Missense_Mutation_p.P57L|NFIC_uc002lxp.2_Missense_Mutation_p.P66L|NFIC_uc010xhj.1_Missense_Mutation_p.P66L|NFIC_uc002lxq.1_Missense_Mutation_p.P18L	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	66	CTF/NF-I.				DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		GGCGAGAAGCCCGAGGTCAAG	0.642													61	49					0	0	0.003610	0	0
HMG20B	10362	broad.mit.edu	37	19	3578055	3578055	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:3578055C>T	uc002lya.2	+	9	953	c.885C>T	c.(883-885)CCC>CCT	p.P295P	HMG20B_uc002lyb.2_Silent_p.P193P	NM_006339	NP_006330	Q9P0W2	HM20B_HUMAN	high-mobility group 20B	295					blood coagulation|cell cycle|chromatin modification	chromosome|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0025)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCGCGACCCCGCCCAGCACG	0.701													24	7					0	0	0.003954	0	0
PIP5K1C	23396	broad.mit.edu	37	19	3644155	3644155	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:3644155G>A	uc002lyj.1	-	12	1497	c.1440C>T	c.(1438-1440)ATC>ATT	p.I480I	PIP5K1C_uc010xhq.1_Silent_p.I480I|PIP5K1C_uc010xhr.1_Silent_p.I480I	NM_012398	NP_036530	O60331	PI51C_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	480					axon guidance	cytosol|plasma membrane	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding			stomach(2)|skin(2)	4		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.95e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0026)|STAD - Stomach adenocarcinoma(1328;0.183)		GCTCGCTAGGGATCTGGCTGG	0.697													12	60					0	0	0.001368	0	0
ATCAY	85300	broad.mit.edu	37	19	3910882	3910882	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:3910882C>T	uc002lyy.3	+	8	1291	c.861C>T	c.(859-861)TTC>TTT	p.F287F	ATCAY_uc010xhz.1_Silent_p.F293F|ATCAY_uc010dts.2_Silent_p.F44F	NM_033064	NP_149053	Q86WG3	ATCAY_HUMAN	caytaxin	287	CRAL-TRIO.				transport		protein binding			breast(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00485)|STAD - Stomach adenocarcinoma(1328;0.183)		CTCGCCCTTTCATCAGGTGAG	0.423													11	37					0	0	0.000978	0	0
CREB3L3	84699	broad.mit.edu	37	19	4168438	4168438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:4168438G>A	uc002lzl.2	+	6	921	c.805G>A	c.(805-807)GAT>AAT	p.D269N	CREB3L3_uc002lzm.2_Missense_Mutation_p.D259N|CREB3L3_uc010xib.1_Missense_Mutation_p.D258N|CREB3L3_uc010xic.1_Intron	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	269	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAATATATCGATGGCCTGGA	0.294													7	15					0	0	0.001984	0	0
SH3GL1	6455	broad.mit.edu	37	19	4364151	4364151	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:4364151G>A	uc002maj.2	-	5	505	c.399C>T	c.(397-399)ATC>ATT	p.I133I	SH3GL1_uc002mak.2_Intron|SH3GL1_uc010xig.1_Silent_p.I85I	NM_003025	NP_003016	Q99961	SH3G1_HUMAN	SH3-domain GRB2-like 1	133	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	lipid binding|protein binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0152)|STAD - Stomach adenocarcinoma(1328;0.182)		GCTTGACCTCGATGTCCAGGG	0.602			T	MLL	AL								39	30					0	0	0.005524	0	0
PLIN5	440503	broad.mit.edu	37	19	4523732	4523732	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:4523732G>A	uc002mas.2	-	8	1253	c.1200C>T	c.(1198-1200)ATC>ATT	p.I400I		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	400						lipid particle					0						CAGGGCCCCCGATGACCTCGT	0.726													44	36					0	0	0.002852	0	0
TICAM1	148022	broad.mit.edu	37	19	4817010	4817010	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:4817010G>A	uc002mbi.2	-	2	1631	c.1380C>T	c.(1378-1380)TTC>TTT	p.F460F		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	460	TIR.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		GGCGACAGTCGAAGTTGGAGG	0.607													15	56					0	0	0.007413	0	0
TMEM146	257062	broad.mit.edu	37	19	5766155	5766155	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:5766155C>T	uc002mda.2	+	17	1609	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I	TMEM146_uc010duj.1_Silent_p.I174I	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	516	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATAAAAAGATCGTCATCCAGA	0.303													24	14					0	0	0.003954	0	0
ACER1	125981	broad.mit.edu	37	19	6312166	6312166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:6312166C>T	uc002mel.2	-	3	422	c.344G>A	c.(343-345)GGG>GAG	p.G115E		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	115	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						CCACCTGTTCCCCCCAAGGAA	0.612													11	21					0	0	0.001855	0	0
C3	718	broad.mit.edu	37	19	6719374	6719374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:6719374C>T	uc002mfm.2	-	2	177	c.115G>A	c.(115-117)GAG>AAG	p.E39K		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	39					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ATGGTCTCCTCGCTCTCCAGC	0.582													55	37					0	0	0.003610	0	0
VAV1	7409	broad.mit.edu	37	19	6848067	6848067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:6848067G>A	uc002mfu.1	+	23	2168	c.2071G>A	c.(2071-2073)GGG>AGG	p.G691R	VAV1_uc010xjh.1_Missense_Mutation_p.G659R|VAV1_uc010dva.1_Missense_Mutation_p.G669R|VAV1_uc002mfv.1_Missense_Mutation_p.G636R	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	691	SH2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CCGCTCGGACGGGACTTTCTT	0.597													89	46					0	0	0.003610	0	0
ZNF358	140467	broad.mit.edu	37	19	7584404	7584404	+	Silent	SNP	C	T	T	rs146005675		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:7584404C>T	uc002mgn.2	+	2	446	c.276C>T	c.(274-276)TTC>TTT	p.F92F		NM_018083	NP_060553	Q9NW07	ZN358_HUMAN	zinc finger protein 358	92					embryonic forelimb morphogenesis|neural tube development|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						CTTCGAGTTTCGACCTCGATC	0.607													24	94					0	0	0.001786	0	0
CD209	30835	broad.mit.edu	37	19	7810630	7810630	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:7810630A>G	uc002mht.2	-	4	589	c.522T>C	c.(520-522)ACT>ACC	p.T174T	CD209_uc010xju.1_Intron|CD209_uc010dvp.2_Silent_p.T150T|CD209_uc002mhr.2_Silent_p.T150T|CD209_uc002mhs.2_Silent_p.T150T|CD209_uc002mhu.2_Intron|CD209_uc010dvq.2_Silent_p.T174T|CD209_uc002mhq.2_Silent_p.T174T|CD209_uc002mhv.2_Silent_p.T150T|CD209_uc002mhx.2_Silent_p.T130T|CD209_uc002mhw.2_Intron|CD209_uc010dvr.2_Intron	NM_021155	NP_066978	Q9NNX6	CD209_HUMAN	CD209 molecule isoform 1	174	4.|Extracellular (Probable).|7 X approximate tandem repeats.				cell-cell recognition|endocytosis|heterophilic cell-cell adhesion|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to membrane|plasma membrane	mannose binding|metal ion binding|peptide antigen binding|receptor activity|virion binding			skin(1)	1						CCTTCAGCCGAGTCAGCTCCT	0.562													3	156					0	0	0.000248	0	0
FBN3	84467	broad.mit.edu	37	19	8137016	8137016	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:8137016G>A	uc002mjf.2	-	62	8025	c.8004C>T	c.(8002-8004)CTC>CTT	p.L2668L	FBN3_uc002mje.2_Silent_p.L464L	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2668						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CTTCAGACGAGAGCAGCTCCT	0.657													87	68					0	0	0.003610	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8668765	8668765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:8668765C>T	uc002mkj.1	-	5	713	c.439G>A	c.(439-441)GGC>AGC	p.G147S	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	147					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						ACGATCAGGCCGTGCTGGGTT	0.537													41	27					0	0	0.003610	0	0
ACTL9	284382	broad.mit.edu	37	19	8808059	8808059	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:8808059G>A	uc002mkl.2	-	1	1114	c.993C>T	c.(991-993)CGC>CGT	p.R331R		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	331						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						CCAAGTCCGCGCGCATCTCCA	0.667													14	46					0	0	0.003163	0	0
MUC16	94025	broad.mit.edu	37	19	9061313	9061313	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9061313C>T	uc002mkp.2	-	3	26337	c.26133G>A	c.(26131-26133)AGG>AGA	p.R8711R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8713	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TACTGATCTCCCTTAATCCAG	0.493													17	9					0	0	0.006122	0	0
MUC16	94025	broad.mit.edu	37	19	9065080	9065080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9065080C>T	uc002mkp.2	-	3	22570	c.22366G>A	c.(22366-22368)GTT>ATT	p.V7456I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7458	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTATTTCAACTGAGGTGCTG	0.478													47	26					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9069690	9069690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9069690G>A	uc002mkp.2	-	3	17960	c.17756C>T	c.(17755-17757)CCC>CTC	p.P5919L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5921	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCCACAGAGGGAGGGCTTTG	0.498													12	40					0	0	0.001368	0	0
MUC16	94025	broad.mit.edu	37	19	9071467	9071467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9071467G>A	uc002mkp.2	-	3	16183	c.15979C>T	c.(15979-15981)CCC>TCC	p.P5327S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5329	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCCACAGGGGGAGTTGTCATC	0.542													4	34					0	0	0.000248	0	0
MUC16	94025	broad.mit.edu	37	19	9072472	9072472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9072472C>T	uc002mkp.2	-	3	15178	c.14974G>A	c.(14974-14976)GAC>AAC	p.D4992N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4994	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTGATGGGTCCATGGTAAAA	0.473													19	19					0	0	0.001523	0	0
MUC16	94025	broad.mit.edu	37	19	9072844	9072844	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9072844C>T	uc002mkp.2	-	3	14806	c.14602G>A	c.(14602-14604)GAA>AAA	p.E4868K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4870	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGGTGTCTTCCATGGTGGAG	0.463													58	44					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9076384	9076384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9076384G>A	uc002mkp.2	-	3	11266	c.11062C>T	c.(11062-11064)CCT>TCT	p.P3688S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3689	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAAATGTCAGGAACTGAGATG	0.433													13	51					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	9086722	9086722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9086722C>T	uc002mkp.2	-	1	5297	c.5093G>A	c.(5092-5094)GGA>GAA	p.G1698E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1698	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAACTCTTCCTAATGACTG	0.483													35	30					0	0	0.003755	0	0
MUC16	94025	broad.mit.edu	37	19	9088812	9088812	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9088812G>A	uc002mkp.2	-	1	3207	c.3003C>T	c.(3001-3003)TTC>TTT	p.F1001F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1001	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGAGAAGTGAATTTAGAGA	0.478													30	107					0	0	0.001512	0	0
MUC16	94025	broad.mit.edu	37	19	9088841	9088841	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9088841G>C	uc002mkp.2	-	1	3178	c.2974C>G	c.(2974-2976)CTC>GTC	p.L992V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	992	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTAGCAGAGAGAGAAGTGGCA	0.473													42	134					0	0	0.002522	0	0
OR7D2	162998	broad.mit.edu	37	19	9296778	9296778	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9296778T>A	uc002mkz.1	+	1	509	c.321T>A	c.(319-321)TTT>TTA	p.F107L		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	107	Helical; Name=3; (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						CCATGTTTTTTCCTATTCTGG	0.512													104	51					0	0	0.003610	0	0
OR7D4	125958	broad.mit.edu	37	19	9324843	9324843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9324843G>A	uc002mla.1	-	1	671	c.671C>T	c.(670-672)TCC>TTC	p.S224F		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TCCCATTAAGGAGGAGACAAT	0.502													11	48					0	0	0.000673	0	0
OR7E24	26648	broad.mit.edu	37	19	9361724	9361724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9361724C>T	uc002mlb.1	+	1	5	c.5C>T	c.(4-6)TCC>TTC	p.S2F		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	2	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTACTTATGTCCTATTTTCCA	0.388													3	0					0	0	0.004672	0	0
ZNF560	147741	broad.mit.edu	37	19	9578989	9578989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:9578989C>T	uc002mlp.1	-	10	844	c.634G>A	c.(634-636)GAA>AAA	p.E212K	ZNF560_uc010dwr.1_Missense_Mutation_p.E106K	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	212					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TCATAGAGTTCCTCTCCATTT	0.363													7	29					0	0	0.001984	0	0
COL5A3	50509	broad.mit.edu	37	19	10114320	10114320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:10114320C>T	uc002mmq.1	-	6	856	c.770G>A	c.(769-771)CGA>CAA	p.R257Q		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	257	Nonhelical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CTTGCGACCTCGCCCTTTCTT	0.582													19	57					0	0	0.001216	0	0
COL5A3	50509	broad.mit.edu	37	19	10114809	10114809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:10114809C>T	uc002mmq.1	-	5	693	c.607G>A	c.(607-609)GAG>AAG	p.E203K		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	203	TSP N-terminal.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			ATCAGCAGCTCCTGAATGTCT	0.612													15	48					0	0	0.002450	0	0
RDH8	50700	broad.mit.edu	37	19	10124205	10124205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:10124205C>T	uc002mmr.2	+	1	281	c.32C>T	c.(31-33)TCC>TTC	p.S11F		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	11	NADP (By similarity).				estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	GTGTTGATCTCCGGCTGCTCA	0.607													39	63					0	0	0.002522	0	0
LDLR	3949	broad.mit.edu	37	19	11216251	11216251	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:11216251G>A	uc002mqk.3	+	4	837	c.669G>A	c.(667-669)AAG>AAA	p.K223K	LDLR_uc010xlk.1_Silent_p.K223K|LDLR_uc010xll.1_Silent_p.K182K|LDLR_uc010xlm.1_Silent_p.K76K|LDLR_uc010xln.1_Intron|LDLR_uc010xlo.1_Intron	NM_000527	NP_000518	P01130	LDLR_HUMAN	low density lipoprotein receptor precursor	223	LDL-receptor class A 5.|Extracellular (Potential).				cholesterol homeostasis|cholesterol metabolic process|interspecies interaction between organisms|intestinal cholesterol absorption|low-density lipoprotein particle clearance|receptor-mediated endocytosis	clathrin-coated endocytic vesicle membrane|coated pit|early endosome|endosome membrane|external side of plasma membrane|integral to plasma membrane|low-density lipoprotein particle|lysosome	calcium ion binding|low-density lipoprotein receptor activity|protein binding|very-low-density lipoprotein particle receptor activity			ovary(2)|skin(2)	4		Lung NSC(9;0.000245)|Renal(1328;0.0007)|Hepatocellular(1079;0.0524)		GBM - Glioblastoma multiforme(1328;1.36e-05)|STAD - Stomach adenocarcinoma(1328;0.000766)|Lung(535;0.197)	Methyl aminolevulinate(DB00992)|Porfimer(DB00707)	CCGACTGCAAGGACAAATCTG	0.647													77	140					0	0	0.003610	0	0
DOCK6	57572	broad.mit.edu	37	19	11319778	11319778	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:11319778T>C	uc002mqs.3	-	38	4794	c.4753A>G	c.(4753-4755)ATT>GTT	p.I1585V	DOCK6_uc002mqr.3_5'UTR|DOCK6_uc010xlq.1_Missense_Mutation_p.I924V	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1585	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCCCGGGCAATTCTGGAGTCC	0.652													18	9					0	0	0.001216	0	0
ZNF878	729747	broad.mit.edu	37	19	12154888	12154888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:12154888C>T	uc002mta.1	-	5	1469	c.1469G>A	c.(1468-1470)AGG>AAG	p.R490K		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	443	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						TGTGTGAGTCCTTTCATGCAT	0.403													6	43					0	0	0.001984	0	0
ZNF791	163049	broad.mit.edu	37	19	12740041	12740041	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:12740041C>T	uc002mua.2	+	4	1860	c.1698C>T	c.(1696-1698)TCC>TCT	p.S566S	ZNF791_uc010xml.1_Silent_p.S534S|ZNF791_uc010dyu.1_Silent_p.S457S|ZNF791_uc010xmm.1_Silent_p.S457S	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	566	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TGTCCACATCCTTAAAAAAAC	0.328													60	32					0	0	0.003610	0	0
HOOK2	29911	broad.mit.edu	37	19	12878642	12878642	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:12878642A>G	uc002muy.2	-	13	1462	c.1291T>C	c.(1291-1293)TTG>CTG	p.L431L	HOOK2_uc010xmq.1_5'Flank|HOOK2_uc002muz.2_Silent_p.L431L	NM_013312	NP_037444	Q96ED9	HOOK2_HUMAN	hook homolog 2 isoform 1	431	Sufficient for interaction with microtubules.				early endosome to late endosome transport|endocytosis|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|protein transport	centrosome|FHF complex|microtubule	identical protein binding|microtubule binding			ovary(1)|breast(1)|skin(1)	3						GCCTGGGTCAACCCCCGCGGC	0.632													3	13					0	0	0.004672	0	0
MAST1	22983	broad.mit.edu	37	19	12962929	12962929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:12962929G>A	uc002mvm.2	+	9	1005	c.877G>A	c.(877-879)GAA>AAA	p.E293K	MAST1_uc002mvk.2_Missense_Mutation_p.E289K	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	293					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CCTGCCTCAGGAATTCAACCC	0.652													11	72					0	0	0.000673	0	0
DAND5	199699	broad.mit.edu	37	19	13084240	13084240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:13084240G>A	uc002mwc.1	+	2	405	c.362G>A	c.(361-363)CGA>CAA	p.R121Q	DAND5_uc010dyz.1_3'UTR	NM_152654	NP_689867	Q8N907	DAND5_HUMAN	dante precursor	121	CTCK.					extracellular region				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(19;1.87e-18)			ATACGCCTCCGAAATCATCTG	0.617													13	77					0	0	0.001855	0	0
NANOS3	342977	broad.mit.edu	37	19	13988108	13988108	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:13988108C>T	uc002mxj.3	+	1	159	c.46C>T	c.(46-48)CTG>TTG	p.L16L		NM_001098622	NP_001092092	P60323	NANO3_HUMAN	nanos homolog 3	16					anti-apoptosis|germ cell development|multicellular organismal development|oogenesis|regulation of cell cycle|regulation of translation|spermatogenesis	cytoplasmic mRNA processing body|nucleus|stress granule	RNA binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			TTTGGCACACCTGGTTAGGGC	0.602													146	98					0	0	0.003610	0	0
PODNL1	79883	broad.mit.edu	37	19	14048660	14048660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:14048660C>T	uc002mxr.2	-	2	458	c.184G>A	c.(184-186)GGC>AGC	p.G62S	PODNL1_uc010xni.1_Missense_Mutation_p.M1I|PODNL1_uc010xnj.1_Missense_Mutation_p.G60S|PODNL1_uc002mxs.2_Missense_Mutation_p.G60S	NM_024825	NP_079101	Q6PEZ8	PONL1_HUMAN	podocan-like 1 isoform 1	62	Leu-rich.|LRRNT.					proteinaceous extracellular matrix				central_nervous_system(1)	1			OV - Ovarian serous cystadenocarcinoma(19;5.26e-23)			AGGTCCAAGCCATCACAGTCC	0.687													7	4					0	0	0.000673	0	0
EMR3	84658	broad.mit.edu	37	19	14752428	14752428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:14752428C>T	uc002mzi.3	-	10	1199	c.1051G>A	c.(1051-1053)GAG>AAG	p.E351K	EMR3_uc010dzp.2_Missense_Mutation_p.E299K|EMR3_uc010xnv.1_Missense_Mutation_p.E225K	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	351	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						GGATCCTCCTCCTGGGACCGA	0.562													18	12					0	0	0.007413	0	0
OR1I1	126370	broad.mit.edu	37	19	15198767	15198767	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:15198767G>A	uc010xoe.1	+	1	891	c.891G>A	c.(889-891)ATG>ATA	p.M297I		NM_001004713	NP_001004713	O60431	OR1I1_HUMAN	olfactory receptor, family 1, subfamily I,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3						ACAAGGATATGAAGGCAGCCC	0.458													21	20					0	0	0.002299	0	0
CYP4F8	11283	broad.mit.edu	37	19	15739113	15739113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:15739113G>A	uc002nbi.2	+	12	1181	c.1117G>A	c.(1117-1119)GAC>AAC	p.D373N	CYP4F8_uc010xoj.1_Missense_Mutation_p.D185N	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	373					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						TTTCCTTAGGGACGACCTGGC	0.602													23	92					0	0	0.003954	0	0
OR10H3	26532	broad.mit.edu	37	19	15852753	15852753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:15852753C>T	uc010xoq.1	+	1	551	c.551C>T	c.(550-552)TCC>TTC	p.S184F		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATGTGCTTTCCCTCTTGAAG	0.493													23	73					0	0	0.002299	0	0
Unknown	0	broad.mit.edu	37	19	15880411	15880411	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:15880411G>A	uc002nbo.2	-	8		c.1283C>T								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		ATCTCTTTAGGATCGCGGTCC	0.557													7	39					0	0	0.001984	0	0
C19orf44	84167	broad.mit.edu	37	19	16614027	16614027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:16614027C>T	uc002neh.1	+	3	984	c.911C>T	c.(910-912)TCC>TTC	p.S304F	MED26_uc002nee.2_Intron|C19orf44_uc002nef.1_Missense_Mutation_p.S304F|C19orf44_uc002neg.2_Missense_Mutation_p.S304F|C19orf44_uc010eai.1_RNA	NM_032207	NP_115583	Q9H6X5	CS044_HUMAN	hypothetical protein LOC84167	304											0						AGTCACGTTTCCAGTGACACC	0.552													14	59					0	0	0.002450	0	0
NWD1	284434	broad.mit.edu	37	19	16875863	16875863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:16875863C>T	uc002neu.3	+	10	2692	c.2270C>T	c.(2269-2271)TCC>TTC	p.S757F	NWD1_uc002net.3_Missense_Mutation_p.S622F|NWD1_uc002nev.3_Missense_Mutation_p.S551F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	757							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						AGCTGGATTTCCTGCCGGGGC	0.597													5	39					0	0	0.000602	0	0
SIN3B	23309	broad.mit.edu	37	19	16957920	16957920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:16957920C>T	uc002ney.1	+	5	736	c.722C>T	c.(721-723)TCT>TTT	p.S241F	SIN3B_uc002new.2_Missense_Mutation_p.S241F|SIN3B_uc002nex.2_Missense_Mutation_p.S173F|SIN3B_uc002nez.1_Missense_Mutation_p.S241F	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	241					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						GCCAAGCGGTCTCTGGTGAGT	0.652													7	39					0	0	0.004482	0	0
GTPBP3	84705	broad.mit.edu	37	19	17450003	17450003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:17450003C>T	uc010eas.2	+	6	801	c.736C>T	c.(736-738)CTC>TTC	p.L246F	GTPBP3_uc010xpo.1_Missense_Mutation_p.L268F|GTPBP3_uc010ear.1_RNA|GTPBP3_uc002ngh.3_Missense_Mutation_p.L246F|GTPBP3_uc002ngg.3_Missense_Mutation_p.L278F|GTPBP3_uc002ngi.3_5'UTR	NM_032620	NP_116009	Q969Y2	GTPB3_HUMAN	GTP binding protein 3 (mitochondrial) isoform V	246					tRNA modification	mitochondrion	GTP binding|GTPase activity			skin(1)	1						CGGGCAGAGGCTCCGCTCAGG	0.657													5	51					0	0	0.000602	0	0
PLVAP	83483	broad.mit.edu	37	19	17487999	17487999	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:17487999G>A	uc002ngk.1	-	1	149	c.99C>T	c.(97-99)TCC>TCT	p.S33S		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	33	Helical; Signal-anchor for type II membrane protein; (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						ATTGGATGAGGGAGACGAAGA	0.612													17	54					0	0	0.004990	0	0
UNC13A	23025	broad.mit.edu	37	19	17741523	17741523	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:17741523C>T	uc002nhd.2	-	29	3729	c.3729G>A	c.(3727-3729)GAG>GAA	p.E1243E		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1155	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CCTCCTCATTCTCATCCAGCC	0.582													47	20					0	0	0.003610	0	0
JAK3	3718	broad.mit.edu	37	19	17943638	17943638	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:17943638G>A	uc002nhn.3	-	18	2551	c.2451C>T	c.(2449-2451)TTC>TTT	p.F817F	JAK3_uc010ebh.2_Intron|JAK3_uc002nho.2_Silent_p.F817F	NM_000215	NP_000206	P52333	JAK3_HUMAN	Janus kinase 3	817					B cell differentiation|cytokine-mediated signaling pathway|enzyme linked receptor protein signaling pathway|intracellular protein kinase cascade|negative regulation of dendritic cell cytokine production|negative regulation of FasL biosynthetic process|negative regulation of interleukin-10 production|negative regulation of interleukin-12 production|negative regulation of T-helper 1 cell differentiation|negative regulation of thymocyte apoptosis|peptidyl-tyrosine phosphorylation|positive regulation of anti-apoptosis|response to interleukin-15|response to interleukin-2|response to interleukin-4|response to interleukin-9|T cell homeostasis	cytoskeleton|cytosol|endomembrane system|membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			haematopoietic_and_lymphoid_tissue(40)|lung(5)|breast(5)|ovary(3)|stomach(2)|upper_aerodigestive_tract(1)	56						GTCTCTCCTCGAAGATCGTGG	0.612		2	Mis		acute megakaryocytic leukemia|								90	59					0	0	0.003610	0	0
SLC5A5	6528	broad.mit.edu	37	19	17983279	17983279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:17983279G>A	uc002nhr.3	+	1	498	c.151G>A	c.(151-153)GGC>AGC	p.G51S		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	51	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						CTTCACCGGGGGCCGGCGCCT	0.716													4	16					0	0	0.000248	0	0
LOC284441	284441	broad.mit.edu	37	19	20370222	20370222	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:20370222C>T	uc002nov.2	+	1	1766	c.1015C>T	c.(1015-1017)CGA>TGA	p.R339*		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						TGTGACTGTTCGATAAACTCC	0.413													21	16					0	0	0.003330	0	0
ZNF430	80264	broad.mit.edu	37	19	21240360	21240360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:21240360C>T	uc002npj.2	+	5	1356	c.1246C>T	c.(1246-1248)CTT>TTT	p.L416F	ZNF430_uc002npk.2_Missense_Mutation_p.L415F	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	416	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						GTCCTCGACCCTTACTAAACA	0.353													8	17					0	0	0.004482	0	0
ZNF257	113835	broad.mit.edu	37	19	22270835	22270835	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:22270835T>A	uc010ecx.2	+	4	452	c.283T>A	c.(283-285)TTC>ATC	p.F95I	ZNF257_uc010ecy.2_Missense_Mutation_p.F63I	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	95					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				AAAATATTTTTTCCAAAAAGT	0.338													25	25					0	0	0.004656	0	0
ZNF257	113835	broad.mit.edu	37	19	22272020	22272020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:22272020G>A	uc010ecx.2	+	4	1637	c.1468G>A	c.(1468-1470)GAA>AAA	p.E490K	ZNF257_uc010ecy.2_Missense_Mutation_p.E458K	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	490	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				CTACAAATGTGAAGAATGTGG	0.408													5	28					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	19	23170170	23170170	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:23170170G>A	uc002nqy.1	-	1		c.1_splice	c.e1-1		uc002nqz.1_Splice_Site					Homo sapiens zinc finger protein 117, mRNA (cDNA clone IMAGE:40112371).																		CCTTGCTCCAGAAAAATGATC	0.413													15	22					0	0	0.006122	0	0
ZNF91	7644	broad.mit.edu	37	19	23542334	23542334	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:23542334A>G	uc002nre.2	-	4	3560	c.3447T>C	c.(3445-3447)CTT>CTC	p.L1149L	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Silent_p.L1117L	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	1149	C2H2-type 36.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				TATGGTTAGTAAGGATTGAAG	0.219													5	29					0	0	0.000602	0	0
ZNF681	148213	broad.mit.edu	37	19	23927132	23927132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:23927132G>A	uc002nrk.3	-	4	1362	c.1220C>T	c.(1219-1221)TCA>TTA	p.S407L	ZNF681_uc002nrl.3_Missense_Mutation_p.S338L|ZNF681_uc002nrj.3_Missense_Mutation_p.S338L	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	407	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				AGTAAGGTGTGAGGACTTGTT	0.398													11	20					0	0	0.000673	0	0
ZNF681	148213	broad.mit.edu	37	19	23938330	23938330	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:23938330C>T	uc002nrk.3	-	2	169	c.27G>A	c.(25-27)GTG>GTA	p.V9V	ZNF681_uc002nrl.3_Intron|ZNF681_uc002nrj.3_Intron|ZNF681_uc002nrm.1_5'Flank	NM_138286	NP_612143	Q96N22	ZN681_HUMAN	zinc finger protein 681	9	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.11)|Lung NSC(12;0.163)|all_epithelial(12;0.206)				ATTCTATGGCCACATCCCTAA	0.308													9	45					0	0	0.006214	0	0
ZNF536	9745	broad.mit.edu	37	19	31040070	31040070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:31040070G>A	uc002nsu.1	+	4	3682	c.3544G>A	c.(3544-3546)GAT>AAT	p.D1182N	ZNF536_uc010edd.1_Missense_Mutation_p.D1182N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGATGAAGAGGATGTTGAAAC	0.557													39	28					0	0	0.005524	0	0
TSHZ3	57616	broad.mit.edu	37	19	31767491	31767491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:31767491C>T	uc002nsy.3	-	2	3273	c.3208G>A	c.(3208-3210)GAC>AAC	p.D1070N		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	1070					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					AGAAGGTGGTCTTCCGGAGAT	0.468													20	59					0	0	0.002780	0	0
RHPN2	85415	broad.mit.edu	37	19	33482762	33482762	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:33482762C>T	uc002nuf.2	-	13	1677	c.1611G>A	c.(1609-1611)CAG>CAA	p.Q537Q	RHPN2_uc010xro.1_Silent_p.Q386Q|RHPN2_uc002nue.2_Silent_p.Q267Q	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	537	PDZ.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					GGAAGTGAACCTGAACGGGGG	0.522													21	18					0	0	0.001523	0	0
GPATCH1	55094	broad.mit.edu	37	19	33587270	33587270	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:33587270T>C	uc002nug.1	+	7	1084	c.770T>C	c.(769-771)CTT>CCT	p.L257P		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	257						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					CATTTTAATCTTTTCAGTGGT	0.423													25	78					0	0	0.004656	0	0
CHST8	64377	broad.mit.edu	37	19	34263626	34263626	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:34263626C>T	uc002nus.3	+	5	1438	c.933C>T	c.(931-933)TTC>TTT	p.F311F	CHST8_uc002nut.3_Silent_p.F311F|CHST8_uc002nuu.2_Silent_p.F311F	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	311	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					TTCCCGAGTTCGTCCAGTACC	0.652													29	31					0	0	0.001786	0	0
Unknown	0	broad.mit.edu	37	19	34583922	34583922	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:34583922G>A	uc002nuz.2	-	1	292	c.240C>T	c.(238-240)TTC>TTT	p.F80F						full-length cDNA clone CS0DE007YF24 of Placenta of Homo sapiens (human).																		AGATCAGACGGAAACCCTCTC	0.423													6	6					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	19	34583957	34583957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:34583957C>T	uc002nuz.2	-	1	257	c.205G>A	c.(205-207)GAT>AAT	p.D69N						full-length cDNA clone CS0DE007YF24 of Placenta of Homo sapiens (human).																		CTGATGACATCCATAAATCCA	0.448													7	5					0	0	0.001984	0	0
HPN	3249	broad.mit.edu	37	19	35551548	35551548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:35551548C>T	uc002nxq.1	+	10	883	c.638C>T	c.(637-639)TCC>TTC	p.S213F	HPN_uc002nxr.1_Missense_Mutation_p.S213F|HPN_uc002nxs.1_Missense_Mutation_p.S55F|HPN_uc010xsh.1_Missense_Mutation_p.S182F|HPN_uc002nxt.1_Missense_Mutation_p.S97F|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	213	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	CGGGTCCTGTCCCGATGGCGA	0.677													9	64					0	0	0.004482	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36279316	36279316	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:36279316C>T	uc002obs.1	+	21	3451	c.3366C>T	c.(3364-3366)ACC>ACT	p.T1122T	ARHGAP33_uc002obt.1_Silent_p.T1119T|ARHGAP33_uc010eel.2_Intron|ARHGAP33_uc002obv.1_Silent_p.T871T	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	1283					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						AGGGCCAGACCCGAAGCTACT	0.597													7	3					0	0	0.003080	0	0
NPHS1	4868	broad.mit.edu	37	19	36321760	36321760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:36321760C>T	uc002oby.2	-	28	3580	c.3580G>A	c.(3580-3582)GAT>AAT	p.D1194N		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	1194	Binds to NPHS2.|Cytoplasmic (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TGCACTTCATCGTAGAGGGGT	0.478													57	31					0	0	0.003610	0	0
NPHS1	4868	broad.mit.edu	37	19	36322271	36322271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:36322271G>A	uc002oby.2	-	26	3314	c.3314C>T	c.(3313-3315)TCG>TTG	p.S1105L	NPHS1_uc010eem.1_RNA	NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	1105	Cytoplasmic (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GTCCTCTTCCGACCTTCCAGG	0.597													46	28					0	0	0.003610	0	0
NPHS1	4868	broad.mit.edu	37	19	36334409	36334409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:36334409G>A	uc002oby.2	-	17	2299	c.2299C>T	c.(2299-2301)CCC>TCC	p.P767S		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	767	Ig-like C2-type 7.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GGGAGGATGGGATTGGCATCG	0.542													26	111					0	0	0.003954	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677313	37677313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:37677313G>A	uc002ofq.2	-	5	1380	c.1126C>T	c.(1126-1128)CAC>TAC	p.H376Y	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.H190Y	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	376	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTCCAGTGTGAATTCTCTGA	0.418													18	47					0	0	0.006122	0	0
ZNF571	51276	broad.mit.edu	37	19	38056630	38056630	+	Missense_Mutation	SNP	G	A	A	rs140590185	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:38056630G>A	uc002ogt.2	-	4	801	c.700C>T	c.(700-702)CGT>TGT	p.R234C	uc002ogm.2_Intron|uc002ogn.2_Intron|ZNF540_uc002ogo.2_Intron|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Missense_Mutation_p.R234C	NM_016536	NP_057620	Q7Z3V5	ZN571_HUMAN	zinc finger protein 571	234	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGTGAACCACGAATAAAAGCT	0.368													4	31					0	0	0.001168	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38573504	38573504	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:38573504G>A	uc002ohk.2	+	3	1808	c.1299G>A	c.(1297-1299)GAG>GAA	p.E433E		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	433					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TCCGCAATGAGATCGGGGGCG	0.657													16	78					0	0	0.004990	0	0
RASGRP4	115727	broad.mit.edu	37	19	38904084	38904084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:38904084C>T	uc002oir.2	-	10	1475	c.1261G>A	c.(1261-1263)GAG>AAG	p.E421K	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.E352K|RASGRP4_uc010xub.1_Missense_Mutation_p.E387K|RASGRP4_uc010xuc.1_Missense_Mutation_p.E329K|RASGRP4_uc010xud.1_Missense_Mutation_p.E324K|RASGRP4_uc010xue.1_Missense_Mutation_p.E232K|RASGRP4_uc010egb.2_Missense_Mutation_p.E407K	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	421	Ras-GEF.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TCATAGATCTCGTCTTCCGTG	0.612													8	4					0	0	0.003080	0	0
PAPL	390928	broad.mit.edu	37	19	39597622	39597622	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:39597622C>T	uc002oki.2	+	12	1423	c.1149C>T	c.(1147-1149)TTC>TTT	p.F383F	PAPL_uc010egl.2_Intron	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	383						extracellular region	acid phosphatase activity|metal ion binding				0						TTGCTGTCTTCCCGAGGCCCT	0.642													22	11					0	0	0.001882	0	0
TIMM50	92609	broad.mit.edu	37	19	39971592	39971592	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:39971592C>T	uc002olu.1	+	1	541	c.408C>T	c.(406-408)GCC>GCT	p.A136A	TIMM50_uc002olt.1_RNA	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	33					mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			CCCGCCGGGCCCCAGATCAGG	0.706													9	6					0	0	0.006214	0	0
FCGBP	8857	broad.mit.edu	37	19	40384138	40384138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:40384138C>T	uc002omp.3	-	21	9480	c.9472G>A	c.(9472-9474)GAG>AAG	p.E3158K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	3158	TIL 7.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CCACAGACCTCATAGTGGCTG	0.617													25	193					0	0	0.001512	0	0
ZNF780B	163131	broad.mit.edu	37	19	40541451	40541451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:40541451G>A	uc002omu.2	-	5	1380	c.1315C>T	c.(1315-1317)CAT>TAT	p.H439Y	ZNF780B_uc002omv.2_Missense_Mutation_p.H291Y	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	439	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCATTGGAATGAATTTTTTGA	0.378													50	34					0	0	0.003610	0	0
PLD3	23646	broad.mit.edu	37	19	40883978	40883978	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:40883978G>A	uc002onm.3	+	13	1769	c.1371G>A	c.(1369-1371)CGG>CGA	p.R457R	PLD3_uc002onj.3_Silent_p.R457R|PLD3_uc002onk.3_Silent_p.R457R|PLD3_uc002onl.3_Silent_p.R457R|PLD3_uc002onn.2_Silent_p.R457R	NM_001031696	NP_001026866	Q8IV08	PLD3_HUMAN	phospholipase D3	457	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum membrane|integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity|protein binding			skin(2)|ovary(1)	3			Lung(22;0.000636)|LUSC - Lung squamous cell carcinoma(20;0.00248)			GCGGCCTGCGGAGCCAGCTGG	0.632													86	45					0	0	0.003610	0	0
CYP2S1	29785	broad.mit.edu	37	19	41704456	41704456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:41704456G>A	uc002opw.2	+	4	638	c.583G>A	c.(583-585)GAT>AAT	p.D195N	CYP2F1_uc010xvw.1_Intron|CYP2S1_uc010xvx.1_Intron	NM_030622	NP_085125	Q96SQ9	CP2S1_HUMAN	cytochrome P450, family 2, subfamily S,	195					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity			skin(1)	1						CTCCTATGAGGATAAGGAGTT	0.642													20	100					0	0	0.001882	0	0
BCKDHA	593	broad.mit.edu	37	19	41928178	41928178	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:41928178C>T	uc002oqq.2	+	6	785	c.756C>T	c.(754-756)TTC>TTT	p.F252F	CYP2F1_uc010xvw.1_Intron|BCKDHA_uc002oqm.3_Silent_p.F286F|BCKDHA_uc002oqp.1_Silent_p.F144F|BCKDHA_uc002oqr.2_Silent_p.F252F|BCKDHA_uc010xvz.1_Silent_p.F230F	NM_000709	NP_000700	P12694	ODBA_HUMAN	branched chain keto acid dehydrogenase E1, alpha	252					branched chain family amino acid catabolic process	mitochondrial alpha-ketoglutarate dehydrogenase complex	3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity|alpha-ketoacid dehydrogenase activity|carboxy-lyase activity|metal ion binding|protein binding				0						GCTTCAACTTCGCTGCCACAC	0.617													39	38					0	0	0.002522	0	0
CEACAM5	1048	broad.mit.edu	37	19	42218946	42218946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:42218946G>A	uc002ork.2	+	3	602	c.481G>A	c.(481-483)GAT>AAT	p.D161N	CEACAM5_uc010ehz.1_Missense_Mutation_p.D161N|CEACAM5_uc002orj.1_Missense_Mutation_p.D161N|CEACAM5_uc002orl.2_Missense_Mutation_p.D161N	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	161	Ig-like 2.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		GGAGGACAAGGATGCTGTGGC	0.572													23	86					0	0	0.003954	0	0
CEACAM5	1048	broad.mit.edu	37	19	42223949	42223949	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:42223949C>T	uc002ork.2	+	7	1714	c.1593C>T	c.(1591-1593)ACC>ACT	p.T531T	CEACAM5_uc002orj.1_Silent_p.T530T|CEACAM5_uc002orl.2_Silent_p.T531T	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	531	Ig-like 6.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		AGAACACAACCTACCTGTGGT	0.552													17	76					0	0	0.006122	0	0
PSG8	440533	broad.mit.edu	37	19	43359717	43359717	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:43359717G>A	uc002oul.3	-	1	154	c.55C>T	c.(55-57)CTG>TTG	p.L19L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG8_uc002oum.3_Silent_p.L19L|PSG1_uc002oun.2_Intron|PSG8_uc002oup.3_Silent_p.L19L|PSG10_uc010eip.2_RNA|PSG1_uc002our.1_Intron|PSG1_uc010eio.1_Intron|PSG1_uc002oux.1_Intron|PSG1_uc002ouy.1_Intron	NM_001130168	NP_001123640	Q9UQ74	PSG8_HUMAN	pregnancy specific beta-1-glycoprotein 8 isoform	19						extracellular region					0		Prostate(69;0.00899)				CCTGTGAGCAGGACCCCCTTC	0.562													13	75					0	0	0.001855	0	0
PSG7	5676	broad.mit.edu	37	19	43439621	43439621	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:43439621A>G	uc002ovl.3	-	3	467	c.365T>C	c.(364-366)TTA>TCA	p.L122S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	122	Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TATGATGTGTAAAGTGTAGGA	0.478													53	179					0	0	0.003610	0	0
PSG2	5670	broad.mit.edu	37	19	43576027	43576027	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:43576027C>T	uc002ovr.2	-	4	882	c.789G>A	c.(787-789)GCG>GCA	p.A263A	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Silent_p.A263A|PSG2_uc010eiq.1_Silent_p.A263A|PSG2_uc002ovs.3_Silent_p.A263A|PSG2_uc002ovt.3_Silent_p.A263A	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	263	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				GGTTAGAGTTCGCGAAGCAAG	0.443													44	85					0	0	0.003610	0	0
IRGC	56269	broad.mit.edu	37	19	44223817	44223817	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:44223817G>A	uc002oxh.2	+	2	1254	c.1107G>A	c.(1105-1107)GGG>GGA	p.G369G		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	369						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CTGTGTTTGGGACGCTGGTGG	0.652													23	17					0	0	0.003330	0	0
ZNF224	7767	broad.mit.edu	37	19	44605286	44605286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:44605286G>A	uc002oyh.1	+	5	445	c.143G>A	c.(142-144)GGA>GAA	p.G48E		NM_013398	NP_037530	Q9NZL3	ZN224_HUMAN	zinc finger protein 224	48	KRAB.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	DNA binding|protein binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				CTGTTTGCAGGACATCAAGCA	0.388													13	8					0	0	0.001855	0	0
ZNF226	7769	broad.mit.edu	37	19	44681046	44681046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:44681046C>T	uc002oyp.2	+	6	1775	c.1631C>T	c.(1630-1632)TCG>TTG	p.S544L	ZNF226_uc002oyq.2_Missense_Mutation_p.S427L|ZNF226_uc002oyr.2_Missense_Mutation_p.S427L|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.S544L|ZNF226_uc002oyt.2_Missense_Mutation_p.S544L	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	544	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AGTCAAAGTTCGTATCTTCAA	0.443													22	89					0	0	0.002780	0	0
ZNF229	7772	broad.mit.edu	37	19	44933871	44933871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:44933871G>A	uc002oze.1	-	6	1519	c.1085C>T	c.(1084-1086)TCG>TTG	p.S362L	ZNF229_uc010ejk.1_Missense_Mutation_p.S16L|ZNF229_uc010ejl.1_Missense_Mutation_p.S356L	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	362	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				AAGAAGAACCGATTTATACCT	0.498													45	32					0	0	0.002852	0	0
ZNF229	7772	broad.mit.edu	37	19	44934632	44934632	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:44934632G>A	uc002oze.1	-	6	758	c.324C>T	c.(322-324)ATC>ATT	p.I108I	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Silent_p.I102I	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	108	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				CCTCTTCCCAGATTTTGCATG	0.428													11	33					0	0	0.000978	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028097	45028097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:45028097C>T	uc010ejn.1	-	3	410	c.394G>A	c.(394-396)GAC>AAC	p.D132N	CEACAM20_uc010ejo.1_Missense_Mutation_p.D132N|CEACAM20_uc010ejp.1_Missense_Mutation_p.D132N|CEACAM20_uc010ejq.1_Missense_Mutation_p.D132N	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	132	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				GTCCCTGAGTCCTCCCGCTGG	0.537													69	289					0	0	0.003610	0	0
BCAM	4059	broad.mit.edu	37	19	45321793	45321793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:45321793G>A	uc002ozu.2	+	9	1137	c.1093G>A	c.(1093-1095)GAG>AAG	p.E365K	BCAM_uc002ozt.1_Missense_Mutation_p.E365K	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	365	Extracellular (Potential).|Ig-like C2-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				GGACCCCCTGGAGCTCAGCGA	0.627													20	70					0	0	0.001882	0	0
SFRS16	11129	broad.mit.edu	37	19	45559751	45559751	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:45559751G>T	uc002pak.2	+	6	521	c.423G>T	c.(421-423)TTG>TTT	p.L141F	SFRS16_uc002pal.2_RNA|SFRS16_uc010xxh.1_Missense_Mutation_p.L79F|SFRS16_uc002pam.2_Missense_Mutation_p.L141F|SFRS16_uc002pan.1_RNA	NM_007056	NP_008987	Q8N2M8	CLASR_HUMAN	splicing factor, arginine/serine-rich 16	141					mRNA processing|RNA splicing	nucleus					0		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TTGATGAGTTGTACGGAGGCC	0.527													55	212					1.20869e-33	1.53759e-33	0.003610	1	0
PPP1R13L	10848	broad.mit.edu	37	19	45895188	45895188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:45895188G>A	uc002pbn.2	-	8	1842	c.1765C>T	c.(1765-1767)CCA>TCA	p.P589S	PPP1R13L_uc002pbm.2_Missense_Mutation_p.P168S|PPP1R13L_uc002pbo.2_Missense_Mutation_p.P589S	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	589	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		GCCGGGGGTGGAATGGGAGCT	0.667													27	49					0	0	0.004656	0	0
OPA3	80207	broad.mit.edu	37	19	46032360	46032360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:46032360C>T	uc002pcj.3	-	2	597	c.497G>A	c.(496-498)CGA>CAA	p.R166Q		NM_001017989	NP_001017989	Q9H6K4	OPA3_HUMAN	OPA3 protein isoform a	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					response to stimulus|visual perception	mitochondrion					0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00778)|GBM - Glioblastoma multiforme(486;0.0976)|Epithelial(262;0.242)		CGGCGGGTCTCGGAGGCAGAG	0.687													24	32					0	0	0.003954	0	0
SYMPK	8189	broad.mit.edu	37	19	46318911	46318911	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:46318911G>A	uc002pdn.2	-	27	3977	c.3732C>T	c.(3730-3732)CCC>CCT	p.P1244P	RSPH6A_uc002pdm.2_5'Flank	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	1244					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		CGAGGGTCTGGGGGCTCCGCT	0.687													6	19					0	0	0.001168	0	0
GPR77	27202	broad.mit.edu	37	19	47844691	47844691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:47844691C>T	uc010ela.1	+	2	853	c.635C>T	c.(634-636)CCC>CTC	p.P212L	GPR77_uc002pgk.1_Missense_Mutation_p.P212L	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	212	Helical; Name=5; (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		TTCCTGGGGCCCCTGGTGGCC	0.662													46	34					0	0	0.003214	0	0
FAM83E	54854	broad.mit.edu	37	19	49107059	49107059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:49107059G>A	uc002pjn.2	-	4	933	c.868C>T	c.(868-870)CCG>TCG	p.P290S	SPACA4_uc002pjo.2_5'Flank	NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	290										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		GGTGGGAGCGGGCAGGAGGCC	0.711													26	16					0	0	0.004656	0	0
CPT1C	126129	broad.mit.edu	37	19	50214099	50214099	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:50214099G>A	uc002ppj.2	+	15	2056	c.1851G>A	c.(1849-1851)GAG>GAA	p.E617E	CPT1C_uc002ppl.3_3'UTR|CPT1C_uc002ppi.2_Silent_p.E534E|CPT1C_uc002ppk.2_Silent_p.E606E|CPT1C_uc010eng.2_Silent_p.E617E|CPT1C_uc010enh.2_Silent_p.E617E|CPT1C_uc010ybc.1_3'UTR|CPT1C_uc010eni.1_Silent_p.E274E	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	617	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		GGGCCATGGAGGACAAAGAGA	0.443													7	36					0	0	0.001984	0	0
TSKS	60385	broad.mit.edu	37	19	50251672	50251672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:50251672C>T	uc002ppm.2	-	3	465	c.454G>A	c.(454-456)GAA>AAA	p.E152K		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	152							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		TTGGTCTTTTCCTTCAAGCTG	0.562													17	67					0	0	0.007413	0	0
NUP62	23636	broad.mit.edu	37	19	50411880	50411880	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:50411880G>A	uc002pqx.2	-	2	1289	c.1185C>T	c.(1183-1185)TTC>TTT	p.F395F	IL4I1_uc002pqv.1_Intron|IL4I1_uc010eno.1_Intron|IL4I1_uc002pqw.1_Intron|IL4I1_uc002pqu.1_Intron|NUP62_uc002pqy.2_Silent_p.F395F|NUP62_uc002pqz.2_Silent_p.F395F|NUP62_uc002pra.2_Silent_p.F395F|NUP62_uc002prb.2_Silent_p.F395F|NUP62_uc002prc.2_Silent_p.F319F	NM_153719	NP_714941	P37198	NUP62_HUMAN	nucleoporin 62kDa	395	Potential.				carbohydrate metabolic process|cell death|cell surface receptor linked signaling pathway|glucose transport|hormone-mediated signaling pathway|mRNA transport|negative regulation of apoptosis|negative regulation of cell proliferation|nucleocytoplasmic transport|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|protein transport|regulation of glucose transport|transcription, DNA-dependent|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleocytoplasmic shuttling complex|ribonucleoprotein complex|spindle pole	chromatin binding|protein serine/threonine kinase activity|receptor signaling complex scaffold activity|SH2 domain binding|structural constituent of nuclear pore|thyroid hormone receptor binding|ubiquitin binding				0		all_lung(116;1.47e-05)|all_neural(266;0.0459)|Ovarian(192;0.0481)		GBM - Glioblastoma multiforme(134;0.00242)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GGGACAGGATGAAGTCGAGCT	0.597													26	97					0	0	0.006320	0	0
SHANK1	50944	broad.mit.edu	37	19	51170824	51170824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:51170824C>T	uc002psx.1	-	22	4412	c.4393G>A	c.(4393-4395)GAG>AAG	p.E1465K	SHANK1_uc002psw.1_Missense_Mutation_p.E849K	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	1465					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GCCGGGGGCTCCGTCCCCAGC	0.751													6	9					0	0	0.001984	0	0
KLK5	25818	broad.mit.edu	37	19	51447000	51447000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:51447000C>T	uc002pue.2	-	7	987	c.769G>A	c.(769-771)GGA>AGA	p.G257R	KLK5_uc002puf.2_Missense_Mutation_p.G257R|KLK5_uc002pug.2_Missense_Mutation_p.G257R	NM_001077491	NP_001070959	Q9Y337	KLK5_HUMAN	kallikrein-related peptidase 5 preproprotein	257	Peptidase S1.				epidermis development|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis	extracellular space	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00379)|GBM - Glioblastoma multiforme(134;0.00888)		GACACGAGTCCCTGCAGGGAG	0.443													10	40					0	0	0.001368	0	0
KLK7	5650	broad.mit.edu	37	19	51480889	51480889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:51480889C>T	uc002puo.2	-	6	767	c.665G>A	c.(664-666)GGA>GAA	p.G222E	KLK7_uc002pup.2_Missense_Mutation_p.G222E|KLK7_uc010yco.1_Missense_Mutation_p.G96E|KLK7_uc010eok.2_Missense_Mutation_p.G150E	NM_139277	NP_644806	P49862	KLK7_HUMAN	stratum corneum chymotryptic enzyme	222	Peptidase S1.				epidermis development|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00382)|GBM - Glioblastoma multiforme(134;0.00895)		AGGGAAAGTTCCCCAGGACAC	0.522													9	32					0	0	0.004482	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647725	51647725	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:51647725C>T	uc002pvv.1	+	2	565	c.496C>T	c.(496-498)CTG>TTG	p.L166L	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	166	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CTTCCAGAATCTGACCTGCTC	0.632													64	48					0	0	0.003610	0	0
C19orf75	284369	broad.mit.edu	37	19	51770654	51770654	+	Silent	SNP	G	A	A	rs147370216	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:51770654G>A	uc002pwb.1	+	5	819	c.438G>A	c.(436-438)GCG>GCA	p.A146A	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Silent_p.A52A	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	146						integral to membrane				ovary(1)|pancreas(1)	2						AGAAGCAGGCGAAGAAAGCTG	0.468													19	76					0	0	0.001523	0	0
C19orf75	284369	broad.mit.edu	37	19	51771841	51771841	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:51771841G>A	uc002pwb.1	+	6	965	c.584G>A	c.(583-585)CGA>CAA	p.R195Q	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Missense_Mutation_p.R101Q	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	195						integral to membrane				ovary(1)|pancreas(1)	2						CAAGATAAACGAGCCAGCTAA	0.418													23	20					0	0	0.004656	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51919975	51919975	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:51919975C>T	uc002pwo.2	-	3	1267	c.651G>A	c.(649-651)GTG>GTA	p.V217V	SIGLEC10_uc002pwp.2_Silent_p.V159V|SIGLEC10_uc002pwq.2_Silent_p.V159V|SIGLEC10_uc002pwr.2_Silent_p.V217V|SIGLEC10_uc010ycy.1_Silent_p.V217V|SIGLEC10_uc010ycz.1_Silent_p.V169V|SIGLEC10_uc010eow.2_5'UTR|SIGLEC10_uc002pws.1_Silent_p.V143V	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	217	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TGGAGAAGTCCACATGGCAGG	0.632													20	22					0	0	0.001882	0	0
ZNF480	147657	broad.mit.edu	37	19	52824895	52824895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:52824895C>T	uc010ydl.1	+	5	462	c.392C>T	c.(391-393)TCC>TTC	p.S131F	ZNF480_uc002pyv.2_Missense_Mutation_p.S54F|ZNF480_uc010ydm.1_Missense_Mutation_p.S88F|ZNF480_uc010epn.2_5'UTR|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	131					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		CTTGGAGTATCCTTTCACTTA	0.373													11	30					0	0	0.001368	0	0
ZNF611	81856	broad.mit.edu	37	19	53209718	53209718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:53209718G>A	uc002pzz.2	-	7	907	c.590C>T	c.(589-591)TCC>TTC	p.S197F	ZNF611_uc010eqc.2_Missense_Mutation_p.S127F|ZNF611_uc010ydo.1_Missense_Mutation_p.S127F|ZNF611_uc010ydr.1_Missense_Mutation_p.S128F|ZNF611_uc010ydp.1_Missense_Mutation_p.S197F|ZNF611_uc010ydq.1_Missense_Mutation_p.S197F|ZNF611_uc002qaa.3_Missense_Mutation_p.S127F	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	197					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		GGGCCTACAGGAAATTCTTTG	0.383													26	103					0	0	0.004656	0	0
ZNF468	90333	broad.mit.edu	37	19	53345199	53345199	+	Silent	SNP	G	A	A	rs144646148	by1000genomes	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:53345199G>A	uc002qaf.2	-	4	499	c.348C>T	c.(346-348)ATC>ATT	p.I116I	ZNF468_uc002qae.2_Silent_p.I63I	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	116					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		CCAACTCTTTGATTTCTGTCA	0.418													22	103					0	0	0.003330	0	0
ZNF468	90333	broad.mit.edu	37	19	53352344	53352344	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:53352344G>A	uc002qaf.2	-	3	289	c.138C>T	c.(136-138)TCC>TCT	p.S46S	ZNF468_uc002qae.2_5'UTR	NM_001008801	NP_001008801	Q5VIY5	ZN468_HUMAN	zinc finger protein ZNF468 isoform 2	46	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0358)		CCTCACCCAGGGAGACGAGGT	0.473													72	32					0	0	0.003610	0	0
ZNF525	170958	broad.mit.edu	37	19	53884868	53884868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:53884868C>T	uc010eqn.2	+	4	1121	c.928C>T	c.(928-930)CGT>TGT	p.R310C	ZNF525_uc002qbl.2_Intron|ZNF765_uc010ydx.1_Intron	NR_003699				Homo sapiens cDNA FLJ39718 fis, clone SMINT2013695.												0						TGCATGCCATCGTAGCATTCA	0.393													11	10					0	0	0.000978	0	0
MIR520B	574473	broad.mit.edu	37	19	54204530	54204530	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:54204530C>T	hsa-mir-520b|MI0003155	+			c.50C>T			MIR518B_hsa-mir-518b|MI0003156_5'Flank																	0						GAAAGTGCTTCCTTTTAGAGG	0.428													16	6					0	0	0.007413	0	0
PRKCG	5582	broad.mit.edu	37	19	54410031	54410031	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:54410031G>T	uc002qcq.1	+	18	2258	c.1976G>T	c.(1975-1977)CGC>CTC	p.R659L	PRKCG_uc010yeg.1_Missense_Mutation_p.R659L|PRKCG_uc010yeh.1_Missense_Mutation_p.R510L	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	659	AGC-kinase C-terminal.		R -> S.		activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CCTCCAGACCGCCTAGTCCTG	0.652											OREG0025667	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	23	68					7.87624e-14	9.99516e-14	0.002780	1	0
LILRB2	10288	broad.mit.edu	37	19	54783395	54783395	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:54783395G>A	uc002qfb.2	-	5	729	c.463C>T	c.(463-465)CTG>TTG	p.L155L	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Silent_p.L155L|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Silent_p.L155L|LILRB2_uc010yet.1_Silent_p.L39L|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	155	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCCTTACACAGAATGAAGCCG	0.622													13	68					0	0	0.001855	0	0
LAIR1	3903	broad.mit.edu	37	19	54875923	54875923	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:54875923G>T	uc002qfk.1	-	2	359	c.49C>A	c.(49-51)CAG>AAG	p.Q17K	LAIR1_uc002qfl.1_Missense_Mutation_p.Q17K|LAIR1_uc002qfm.1_Missense_Mutation_p.Q17K|LAIR1_uc002qfn.1_Missense_Mutation_p.Q17K|LAIR1_uc010yex.1_Missense_Mutation_p.Q11K|LAIR1_uc002qfo.2_Intron	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	17						integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		TGGATGGTCTGGGCCAGGCAG	0.602													10	43					2.17888e-05	2.75039e-05	0.006214	1	0
KIR3DX1	90011	broad.mit.edu	37	19	55045107	55045107	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:55045107C>T	uc010yfa.1	+	3		c.333C>T			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		ACTGGCCTTTCCAACAACATC	0.507													15	13					0	0	0.004007	0	0
LILRB4	11006	broad.mit.edu	37	19	55176613	55176613	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:55176613G>T	uc002qgp.2	+	6	1101	c.739G>T	c.(739-741)GGG>TGG	p.G247W	LILRB4_uc002qgq.2_Missense_Mutation_p.G247W|LILRB4_uc010ers.1_3'UTR|LILRB4_uc002qgr.2_Missense_Mutation_p.G288W|LILRB4_uc010ert.2_Missense_Mutation_p.G288W|LILRB4_uc010eru.2_Missense_Mutation_p.G276W	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	247	Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CATGCCTACAGGGTCAGTCCC	0.413													12	4					0.00010058	0.000126717	0.001368	1	0
LILRP2	79166	broad.mit.edu	37	19	55220719	55220719	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:55220719G>A	uc002qgs.1	+	1		c.1119G>A			LILRP2_uc002qgt.1_Intron	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						CTGCAGGAAGGGGGTCGGCTC	0.617													4	10					0	0	0.000602	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55349217	55349217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:55349217C>T	uc002qhm.1	+	3	303	c.257C>T	c.(256-258)TCC>TTC	p.S86F	KIR2DS4_uc010yfj.1_Missense_Mutation_p.S79F|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.S86F|KIR2DS4_uc002qhn.1_Missense_Mutation_p.S33F	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	86	Extracellular (Potential).|Ig-like C2-type 1.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GCCAACTTCTCCATTGGTCCC	0.517													141	85					0	0	0.003610	0	0
NLRP2	55655	broad.mit.edu	37	19	55489138	55489138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:55489138G>A	uc002qij.2	+	4	430	c.344G>A	c.(343-345)CGA>CAA	p.R115Q	NLRP2_uc010yfp.1_Missense_Mutation_p.R92Q|NLRP2_uc010esn.2_Intron|NLRP2_uc010eso.2_Missense_Mutation_p.R115Q|NLRP2_uc010esp.2_Missense_Mutation_p.R115Q	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	115					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CGGAAAGAACGACCACCTCTA	0.557													37	30					0	0	0.003214	0	0
NLRP2	55655	broad.mit.edu	37	19	55494259	55494259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:55494259C>T	uc002qij.2	+	6	1279	c.1193C>T	c.(1192-1194)CCC>CTC	p.P398L	NLRP2_uc010yfp.1_Missense_Mutation_p.P375L|NLRP2_uc010esn.2_Missense_Mutation_p.P374L|NLRP2_uc010eso.2_Missense_Mutation_p.P395L|NLRP2_uc010esp.2_Missense_Mutation_p.P376L	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	398	NACHT.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		GGCTCGGCCCCCGCGGTGTGC	0.637													9	50					0	0	0.000978	0	0
GP6	51206	broad.mit.edu	37	19	55526347	55526347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:55526347G>A	uc002qik.2	-	8	990	c.962C>T	c.(961-963)TCA>TTA	p.S321L	GP6_uc002qil.2_Silent_p.I322I|GP6_uc010esq.2_Missense_Mutation_p.S303L	NM_016363	NP_057447	Q9HCN6	GPVI_HUMAN	glycoprotein VI (platelet) isoform 2	321	Cytoplasmic (Potential).				enzyme linked receptor protein signaling pathway|leukocyte migration|platelet activation	integral to plasma membrane	collagen binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.156)	GBM - Glioblastoma multiforme(193;0.0515)		ACCCCCGTTTGATTTCCGGGT	0.662													10	7					0	0	0.001368	0	0
ZNF579	163033	broad.mit.edu	37	19	56090040	56090040	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:56090040G>A	uc002qlh.2	-	2	1019	c.966C>T	c.(964-966)CCC>CCT	p.P322P		NM_152600	NP_689813	Q8NAF0	ZN579_HUMAN	zinc finger protein 579	322					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(297;0.18)	GBM - Glioblastoma multiforme(193;0.106)		GCAGGCTGAGGGGGCCGTGGA	0.751													8	27					0	0	0.003080	0	0
NLRP4	147945	broad.mit.edu	37	19	56369767	56369767	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:56369767C>T	uc002qmd.3	+	3	1430	c.1008C>T	c.(1006-1008)TCC>TCT	p.S336S	NLRP4_uc002qmf.2_Silent_p.S261S|NLRP4_uc010etf.2_Silent_p.S167S	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	336	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		AGCTGTTTTCCATATGCCAAA	0.473													40	32					0	0	0.002222	0	0
NLRP4	147945	broad.mit.edu	37	19	56392888	56392888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:56392888G>A	uc002qmd.3	+	10	3342	c.2920G>A	c.(2920-2922)GAA>AAA	p.E974K	NLRP4_uc002qmf.2_Missense_Mutation_p.E899K|NLRP4_uc010etf.2_Missense_Mutation_p.E749K	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	974							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GACGGCTGAGGAAGAGAGAAA	0.433													19	6					0	0	0.007413	0	0
NLRP8	126205	broad.mit.edu	37	19	56459592	56459592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:56459592G>A	uc002qmh.2	+	1	395	c.324G>A	c.(322-324)ATG>ATA	p.M108I	NLRP8_uc010etg.2_Missense_Mutation_p.M108I	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	108	DAPIN.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTGCCATTATGAACTGTGATA	0.507													33	20					0	0	0.003755	0	0
GALP	85569	broad.mit.edu	37	19	56693615	56693615	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:56693615G>A	uc002qmo.1	+	4	293	c.211G>A	c.(211-213)GCC>ACC	p.A71T	GALP_uc010eti.2_3'UTR	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	71					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		CCTGTGGAAGGCCATCGGTGA	0.488													6	24					0	0	0.003080	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701746	56701746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:56701746C>T	uc010ygh.1	-	4	938	c.938G>A	c.(937-939)GGA>GAA	p.G313E		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	313					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGTGGCTTCTCCTTGAGGCTC	0.557													58	78					0	0	0.003610	0	0
ZIM2	23619	broad.mit.edu	37	19	57286721	57286721	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:57286721G>A	uc002qnr.2	-	11	1301	c.919C>T	c.(919-921)CAG>TAG	p.Q307*	uc010ygp.1_Intron|uc002qnp.1_Intron|ZIM2_uc010ygq.1_Nonsense_Mutation_p.Q103*|ZIM2_uc010ygr.1_Nonsense_Mutation_p.Q103*|ZIM2_uc002qnq.2_Nonsense_Mutation_p.Q307*|ZIM2_uc010etp.2_Nonsense_Mutation_p.Q307*|ZIM2_uc010ygs.1_Nonsense_Mutation_p.Q307*	NM_015363	NP_056178	Q9NZV7	ZIM2_HUMAN	zinc finger, imprinted 2	307					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0314)		GTGCCTTCCTGGGGATCCTTT	0.458													47	22					0	0	0.003214	0	0
ZNF552	79818	broad.mit.edu	37	19	58319928	58319928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:58319928G>A	uc002qqg.2	-	3	874	c.704C>T	c.(703-705)CCT>CTT	p.P235L	ZNF587_uc002qqb.2_Intron|ZNF552_uc010yhg.1_Missense_Mutation_p.P231L	NM_024762	NP_079038	Q9H707	ZN552_HUMAN	zinc finger protein 552	235					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		TTCTTCTGTAGGGAGCAGTCT	0.428													33	8					0	0	0.002836	0	0
ZNF135	7694	broad.mit.edu	37	19	58578433	58578433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:58578433G>A	uc010yhq.1	+	5	713	c.617G>A	c.(616-618)GGA>GAA	p.G206E	ZNF135_uc002qre.2_Missense_Mutation_p.G194E|ZNF135_uc002qrd.1_Missense_Mutation_p.G152E|ZNF135_uc002qrf.2_Missense_Mutation_p.G152E|ZNF135_uc002qrg.2_Missense_Mutation_p.G164E|ZNF135_uc010yhr.1_Missense_Mutation_p.G15E	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	206					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GGAACACGTGGAAAAAGGGAG	0.458													8	34					0	0	0.003080	0	0
TPO	7173	broad.mit.edu	37	2	1440077	1440077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:1440077C>T	uc002qww.2	+	5	494	c.403C>T	c.(403-405)CCT>TCT	p.P135S	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Missense_Mutation_p.P135S|TPO_uc002qwu.2_Missense_Mutation_p.P135S|TPO_uc002qwr.2_Missense_Mutation_p.P135S|TPO_uc002qwx.2_Missense_Mutation_p.P135S|TPO_uc010yio.1_Missense_Mutation_p.P135S|TPO_uc010yip.1_Missense_Mutation_p.P135S	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	135	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	TGGATGTCTCCCTTACATGCT	0.433													23	38					0	0	0.002299	0	0
PXDN	7837	broad.mit.edu	37	2	1651961	1651961	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:1651961G>A	uc002qxa.2	-	17	3655	c.3591C>T	c.(3589-3591)ATC>ATT	p.I1197I		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1197					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GTTTCTCCCGGATCTCAGGGT	0.517													64	138					0	0	0.003610	0	0
MYT1L	23040	broad.mit.edu	37	2	1921070	1921070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:1921070G>A	uc002qxe.2	-	11	2352	c.1525C>T	c.(1525-1527)CCC>TCC	p.P509S	MYT1L_uc002qxd.2_Missense_Mutation_p.P507S|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	509	C2HC-type 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCACACCCGGGGGTTGGACAC	0.498													40	70					0	0	0.002222	0	0
MYT1L	23040	broad.mit.edu	37	2	1983324	1983324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:1983324G>A	uc002qxe.2	-	7	885	c.58C>T	c.(58-60)CCC>TCC	p.P20S	MYT1L_uc002qxd.2_Missense_Mutation_p.P20S	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	20					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GGTTCCACGGGAACTGCAGAG	0.443													28	21					0	0	0.002836	0	0
APOB	338	broad.mit.edu	37	2	21230565	21230565	+	Missense_Mutation	SNP	G	A	A	rs146377316		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:21230565G>A	uc002red.2	-	26	9303	c.9175C>T	c.(9175-9177)CGT>TGT	p.R3059C		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3059					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity	p.R3059C(1)		ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AATGGAAAACGAACTTTCAAA	0.403													119	151					0	0	0.003610	0	0
DTNB	1838	broad.mit.edu	37	2	25611084	25611084	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:25611084C>T	uc002rgh.2	-	17	1972	c.1722G>A	c.(1720-1722)GAG>GAA	p.E574E	DTNB_uc002rgg.2_Silent_p.E203E|DTNB_uc010yko.1_Silent_p.E510E|DTNB_uc010ykp.1_Silent_p.E363E|DTNB_uc002rgo.2_Silent_p.E358E|DTNB_uc002rgi.2_Silent_p.E574E|DTNB_uc002rgj.2_Silent_p.E574E|DTNB_uc002rgk.2_Silent_p.E544E|DTNB_uc002rgl.2_Silent_p.E537E|DTNB_uc002rgq.2_Silent_p.E567E|DTNB_uc002rgm.2_Silent_p.E537E|DTNB_uc002rgn.2_Silent_p.E363E|DTNB_uc002rgp.1_Silent_p.E72E	NM_021907	NP_068707	O60941	DTNB_HUMAN	dystrobrevin, beta isoform 1	574						cytoplasm	calcium ion binding|zinc ion binding			large_intestine(2)|ovary(2)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTGCGAAGGCCTCCTGCACGT	0.612													7	5					0	0	0.003080	0	0
OTOF	9381	broad.mit.edu	37	2	26707409	26707409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:26707409C>T	uc002rhk.2	-	12	1265	c.1138G>A	c.(1138-1140)GTG>ATG	p.V380M		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	380	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTTTGCCCACCACGGCAACG	0.592													19	24					0	0	0.001216	0	0
KCNK3	3777	broad.mit.edu	37	2	26950690	26950690	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:26950690C>T	uc002rhn.2	+	2	602	c.439C>T	c.(439-441)CTG>TTG	p.L147L		NM_002246	NP_002237	O14649	KCNK3_HUMAN	potassium channel, subfamily K, member 3	147	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAAGAAGGGGCTGGGCATGCG	0.662													31	50					0	0	0.003271	0	0
KCNK3	3777	broad.mit.edu	37	2	26951294	26951294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:26951294G>A	uc002rhn.2	+	2	1206	c.1043G>A	c.(1042-1044)GGA>GAA	p.G348E		NM_002246	NP_002237	O14649	KCNK3_HUMAN	potassium channel, subfamily K, member 3	348	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCGTCGCCGGGAGGGGGCGGC	0.692													8	10					0	0	0.004482	0	0
TMEM214	54867	broad.mit.edu	37	2	27257114	27257114	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:27257114C>T	uc002ria.3	+	2	441	c.331C>T	c.(331-333)CTG>TTG	p.L111L	TMEM214_uc010yle.1_RNA|TMEM214_uc002rib.3_Silent_p.L111L	NM_017727	NP_060197	Q6NUQ4	TM214_HUMAN	transmembrane protein 214 isoform 1	111						integral to membrane	protein binding				0						CTTCCGCAGCCTGGAGGAAGC	0.547													15	26					0	0	0.006122	0	0
AGBL5	60509	broad.mit.edu	37	2	27279611	27279611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:27279611G>A	uc002rie.2	+	8	1703	c.1486G>A	c.(1486-1488)GAG>AAG	p.E496K	AGBL5_uc002rid.2_Missense_Mutation_p.E496K|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	496					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCAGTCTAAAGAGGGAAGCGG	0.468													74	88					0	0	0.003610	0	0
ABHD1	84696	broad.mit.edu	37	2	27353480	27353480	+	Silent	SNP	G	A	A	rs147790643	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:27353480G>A	uc002rit.2	+	9	1246	c.1086G>A	c.(1084-1086)CTG>CTA	p.L362L	ABHD1_uc002riu.2_RNA|ABHD1_uc002riv.2_RNA	NM_032604	NP_115993	Q96SE0	ABHD1_HUMAN	abhydrolase domain-containing protein 1	362						integral to membrane	carboxylesterase activity				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCGGCTTCCTGGAAGGGCTGC	0.632													41	48					0	0	0.006230	0	0
SLC5A6	8884	broad.mit.edu	37	2	27423910	27423910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:27423910G>A	uc002rjd.2	-	16	2111	c.1720C>T	c.(1720-1722)CCG>TCG	p.P574S	SLC5A6_uc010eyv.1_Missense_Mutation_p.P574S	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	574					biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	CAGGACAACGGAAGGAGGGAC	0.577													29	27					0	0	0.002836	0	0
SLC5A6	8884	broad.mit.edu	37	2	27430263	27430263	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:27430263G>A	uc002rjd.2	-	3	647	c.256C>T	c.(256-258)CTG>TTG	p.L86L	SLC5A6_uc010eyv.1_Silent_p.L86L|SLC5A6_uc002rje.1_Silent_p.L86L	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	86	Helical; (Potential).				biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	GGCACACCCAGGATGGCCACG	0.592													17	16					0	0	0.006122	0	0
GTF3C2	2976	broad.mit.edu	37	2	27552100	27552100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:27552100G>A	uc002rjv.1	-	15	2290	c.1927C>T	c.(1927-1929)CTT>TTT	p.L643F	GTF3C2_uc010eyy.1_Missense_Mutation_p.L98F|GTF3C2_uc002rju.1_Missense_Mutation_p.L654F|GTF3C2_uc002rjw.1_Missense_Mutation_p.L643F	NM_001521	NP_001512	Q8WUA4	TF3C2_HUMAN	general transcription factor IIIC, polypeptide	643	WD 3.					transcription factor TFIIIC complex				ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGACGTCGAAGGTCCCAGAAT	0.493													123	195					0	0	0.003610	0	0
GCKR	2646	broad.mit.edu	37	2	27746262	27746262	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:27746262C>A	uc002rky.2	+	19	1900	c.1834C>A	c.(1834-1836)CGC>AGC	p.R612S	GCKR_uc010ezd.2_Missense_Mutation_p.R610S|GCKR_uc010ylu.1_Missense_Mutation_p.R422S	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	612					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					AGGTCAGAAGCGCACTGCGGA	0.617													12	28					7.03913e-09	8.9285e-09	0.001368	1	0
PPP1CB	5500	broad.mit.edu	37	2	29001759	29001759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:29001759G>A	uc002rmg.2	+	4	429	c.269G>A	c.(268-270)GGA>GAA	p.G90E	PPP1CB_uc010ymj.1_Missense_Mutation_p.G62E|PPP1CB_uc010ymk.1_Missense_Mutation_p.G62E|PPP1CB_uc010yml.1_Missense_Mutation_p.G62E|PPP1CB_uc002rmh.2_Missense_Mutation_p.G90E	NM_206876	NP_996759	P62140	PP1B_HUMAN	protein phosphatase 1, catalytic subunit, beta	90					cell cycle|cell division|glycogen metabolic process|triglyceride catabolic process	MLL5-L complex|nucleolus|PTW/PP1 phosphatase complex	metal ion binding|myosin phosphatase activity|myosin-light-chain-phosphatase activity|protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)					CTTTTCTTAGGAGATTATGTG	0.348													17	40					0	0	0.004990	0	0
FAM179A	165186	broad.mit.edu	37	2	29247148	29247148	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:29247148C>T	uc010ezl.2	+	13	2112	c.1761C>T	c.(1759-1761)TTC>TTT	p.F587F	FAM179A_uc010ymm.1_Silent_p.F532F|FAM179A_uc002rmr.3_Silent_p.F114F	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	587							binding			ovary(3)|skin(1)	4						CCAACGAGTTCATCCAGAGAG	0.602													8	8					0	0	0.006214	0	0
C2orf71	388939	broad.mit.edu	37	2	29296861	29296861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:29296861C>T	uc002rmt.1	-	1	267	c.267G>A	c.(265-267)ATG>ATA	p.M89I		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	89					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						TCAGTCCTTCCATATCTTTCC	0.502													43	75					0	0	0.003214	0	0
CLIP4	79745	broad.mit.edu	37	2	29368224	29368224	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:29368224C>T	uc002rmv.2	+	8	1251	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S	CLIP4_uc002rmu.2_Missense_Mutation_p.P338S|CLIP4_uc010ezm.1_Missense_Mutation_p.P338S|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.P320S	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	338	CAP-Gly 1.									ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TAAATGTGCCCCCAAGTATGG	0.338													10	25					0	0	0.006214	0	0
CAPN13	92291	broad.mit.edu	37	2	30973992	30973992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:30973992G>A	uc002rnn.2	-	11	1389	c.1213C>T	c.(1213-1215)CCA>TCA	p.P405S	CAPN13_uc002rnp.1_Missense_Mutation_p.P405S	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	405					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					AAATCGAGTGGAAATTTTGCA	0.463													9	9					0	0	0.004482	0	0
XDH	7498	broad.mit.edu	37	2	31572667	31572668	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:31572667_31572668CC>TT	uc002rnv.1	-	26	2932_2933	c.2853_2854GG>AA	c.(2851-2856)GGGGAC>GGAAAC	p.D952N		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	952					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGTGTCAGGTCCCCTTCTTTGT	0.53													33	38					0	0	0.004672	0	0
XDH	7498	broad.mit.edu	37	2	31593227	31593227	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:31593227C>T	uc002rnv.1	-	18	2053	c.1974G>A	c.(1972-1974)AAG>AAA	p.K658K		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	658					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TTACCTTATCCTTCGCAAAGA	0.348													12	26					0	0	0.003163	0	0
RASGRP3	25780	broad.mit.edu	37	2	33745023	33745023	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:33745023C>T	uc002rox.2	+	6	805	c.178C>T	c.(178-180)CGA>TGA	p.R60*	RASGRP3_uc010ync.1_Nonsense_Mutation_p.R60*|RASGRP3_uc002roy.2_Nonsense_Mutation_p.R60*	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	60	N-terminal Ras-GEF.				MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					GTTTACGTATCGAAATGCCAC	0.373													7	5					0	0	0.004482	0	0
CDC42EP3	10602	broad.mit.edu	37	2	37873102	37873102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:37873102G>A	uc002rqi.1	-	2	1622	c.629C>T	c.(628-630)CCA>CTA	p.P210L		NM_006449	NP_006440	Q9UKI2	BORG2_HUMAN	Cdc42 effector protein 3	210					regulation of cell shape|signal transduction	actin cytoskeleton|cytoplasm|endomembrane system|membrane	cytoskeletal regulatory protein binding				0		all_hematologic(82;0.172)				GAGCTCGCATGGGGTGGGATG	0.572													19	38					0	0	0.001216	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656544	40656544	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:40656544C>T	uc002rrx.2	-	1	901	c.877G>A	c.(877-879)GGG>AGG	p.G293R	SLC8A1_uc002rry.2_Missense_Mutation_p.G293R|SLC8A1_uc002rrz.2_Missense_Mutation_p.G293R|SLC8A1_uc002rsa.2_Missense_Mutation_p.G293R|SLC8A1_uc002rsd.3_Missense_Mutation_p.G293R|SLC8A1_uc002rsb.1_Missense_Mutation_p.G293R|SLC8A1_uc010fan.1_Missense_Mutation_p.G293R|SLC8A1_uc002rsc.1_Missense_Mutation_p.G293R	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	293	Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ACCACTTTCCCGTCCATTTCA	0.443													26	41					0	0	0.006320	0	0
ZFP36L2	678	broad.mit.edu	37	2	43452266	43452266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:43452266G>A	uc002rsv.3	-	2	968	c.677C>T	c.(676-678)TCG>TTG	p.S226L	LOC100129726_uc010ynx.1_5'Flank	NM_006887	NP_008818	P47974	TISD_HUMAN	zinc finger protein 36, C3H type-like 2	226					cell proliferation	nucleus	DNA binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Acute lymphoblastic leukemia(82;0.00323)|all_hematologic(82;0.00824)				ggcgccccccgacggcgcggg	0.572													8	5					0	0	0.003080	0	0
ABCG8	64241	broad.mit.edu	37	2	44071673	44071673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:44071673G>A	uc002rtq.2	+	2	181	c.91G>A	c.(91-93)GAA>AAA	p.E31K	ABCG8_uc010yoa.1_Missense_Mutation_p.E31K	NM_022437	NP_071882	Q9H221	ABCG8_HUMAN	ATP-binding cassette sub-family G member 8	31	Cytoplasmic (Potential).				cholesterol efflux|cholesterol homeostasis|excretion|lipid metabolic process|negative regulation of intestinal cholesterol absorption|negative regulation of intestinal phytosterol absorption	apical plasma membrane|integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity			skin(3)|ovary(1)	4		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GTTCTCCTCTGAAAGTGACAA	0.542													105	91					0	0	0.003610	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739392	46739392	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:46739392G>A	uc002ruy.2	-	2	1573	c.459C>T	c.(457-459)CCC>CCT	p.P153P	ATP6V1E2_uc002ruz.2_Silent_p.P153P	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	153					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			TCATGTACTCGGGGATGGCTT	0.542													33	54					0	0	0.002836	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69049768	69049768	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:69049768G>A	uc002seu.2	+	10	1858	c.1494G>A	c.(1492-1494)CGG>CGA	p.R498R	ARHGAP25_uc010fdg.2_Silent_p.R499R|ARHGAP25_uc010yql.1_Silent_p.R459R|ARHGAP25_uc002sew.2_Silent_p.R491R|ARHGAP25_uc002sex.2_Silent_p.R492R|ARHGAP25_uc002sey.2_Silent_p.R225R	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	498					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						ACTCCCAACGGACTTCCACCT	0.547													60	59					0	0	0.003610	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409764	69409764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:69409764C>T	uc002sfg.2	+	16	1681	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	442	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity	p.S442S(1)		ovary(2)|skin(2)	4						CGGCCTTCTTCCCCCCGGAAG	0.423									Familial_Infantile_Hemangioma				28	35					0	0	0.001512	0	0
CLEC4F	165530	broad.mit.edu	37	2	71044191	71044191	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:71044191T>G	uc002shf.2	-	4	399	c.322A>C	c.(322-324)AAA>CAA	p.K108Q	CLEC4F_uc010yqv.1_Missense_Mutation_p.K108Q	NM_173535	NP_775806	Q8N1N0	CLC4F_HUMAN	C-type lectin, superfamily member 13	108	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(5)	5						ATGTGGCCTTTAAATGTCTGG	0.498													23	25					0	0	0.002299	0	0
ZNF638	27332	broad.mit.edu	37	2	71577112	71577112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:71577112C>T	uc002shx.2	+	2	1347	c.1028C>T	c.(1027-1029)TCA>TTA	p.S343L	ZNF638_uc010fec.2_Missense_Mutation_p.S449L|ZNF638_uc010yqw.1_Intron|ZNF638_uc002shw.2_Missense_Mutation_p.S343L|ZNF638_uc002shy.2_Missense_Mutation_p.S343L|ZNF638_uc002shz.2_Missense_Mutation_p.S343L|ZNF638_uc002sia.2_Missense_Mutation_p.S343L|ZNF638_uc002sib.1_Missense_Mutation_p.S343L	NM_014497	NP_055312	Q14966	ZN638_HUMAN	zinc finger protein 638	343					RNA splicing	cytoplasm|nuclear speck	double-stranded DNA binding|nucleotide binding|RNA binding|zinc ion binding			pancreas(2)|ovary(1)|skin(1)	4						GAATTAATTTCATCTGTAAGC	0.408													30	43					0	0	0.001512	0	0
ALMS1	7840	broad.mit.edu	37	2	73677116	73677116	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:73677116C>T	uc002sje.1	+	10	3576	c.3465C>T	c.(3463-3465)TTC>TTT	p.F1155F	ALMS1_uc002sjf.1_Silent_p.F1111F|ALMS1_uc002sjg.2_Silent_p.F541F|ALMS1_uc002sjh.1_Silent_p.F541F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1153	34 X 47 AA approximate tandem repeat.|13.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						CCAGCATTTTCCACCAGCAGG	0.468													49	65					0	0	0.003610	0	0
SLC4A5	57835	broad.mit.edu	37	2	74480220	74480220	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:74480220C>T	uc002sko.1	-	10	1151	c.1149G>A	c.(1147-1149)CGG>CGA	p.R383R	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Silent_p.R383R|SLC4A5_uc010ffc.1_Silent_p.R383R|SLC4A5_uc002skp.1_Silent_p.R319R|SLC4A5_uc002sks.1_Silent_p.R383R	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	383	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TCAGATCTTCCCGATTGCGGG	0.517													17	32					0	0	0.006122	0	0
FAM176A	84141	broad.mit.edu	37	2	75720527	75720527	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:75720527C>T	uc002sni.2	-	4	772	c.294G>A	c.(292-294)CGG>CGA	p.R98R	FAM176A_uc002snj.1_Silent_p.R85R|FAM176A_uc002snk.1_Silent_p.R98R	NM_001135032	NP_001128504	Q9H8M9	F176A_HUMAN	family with sequence similarity 176, member A	98					apoptosis|autophagy	endoplasmic reticulum membrane|integral to membrane|lysosomal membrane|plasma membrane					0						GGCGGTGTCTCCGCACGGAGA	0.632													25	22					0	0	0.004656	0	0
REG3G	130120	broad.mit.edu	37	2	79253891	79253891	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:79253891C>T	uc002snw.2	+	3	214	c.129C>T	c.(127-129)GGC>GGT	p.G43G	REG3G_uc002snx.2_Silent_p.G43G|REG3G_uc010ffu.2_Silent_p.G43G	NM_198448	NP_940850	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma precursor	43					acute-phase response	extracellular region	sugar binding				0						GTCCCAAAGGCTCCAAGGCCT	0.527													10	5					0	0	0.006214	0	0
REG3G	130120	broad.mit.edu	37	2	79255032	79255032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:79255032C>T	uc002snw.2	+	5	518	c.433C>T	c.(433-435)CAC>TAC	p.H145Y	REG3G_uc002snx.2_Missense_Mutation_p.H145Y|REG3G_uc010ffu.2_Missense_Mutation_p.H99Y	NM_198448	NP_940850	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma precursor	145	C-type lectin.				acute-phase response	extracellular region	sugar binding				0						AAACCCTGGCCACTGTGGGAG	0.502													30	35					0	0	0.001512	0	0
REG3A	5068	broad.mit.edu	37	2	79386514	79386514	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:79386514G>A	uc002sod.1	-	1	273	c.18C>T	c.(16-18)GCC>GCT	p.A6A	REG3A_uc002soe.1_Silent_p.A6A|REG3A_uc002sof.1_Silent_p.A6A	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	6					acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding	p.A6V(1)		skin(1)	1						CACTGGGCAGGGCCATGGGAG	0.537													13	25					0	0	0.001855	0	0
RETSAT	54884	broad.mit.edu	37	2	85578056	85578056	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:85578056G>A	uc002spd.2	-	3	635	c.444C>T	c.(442-444)CCC>CCT	p.P148P	RETSAT_uc010fge.2_RNA|RETSAT_uc010ysm.1_Silent_p.P87P|RETSAT_uc010fgf.2_Intron	NM_017750	NP_060220	Q6NUM9	RETST_HUMAN	all-trans-13,14-dihydroretinol saturase	148					retinol metabolic process	endoplasmic reticulum membrane|nuclear outer membrane	all-trans-retinol 13,14-reductase activity|electron carrier activity			ovary(2)	2					Vitamin A(DB00162)	GAGAGGACAGGGGAGCCCAGT	0.532													25	26					0	0	0.003954	0	0
REEP1	65055	broad.mit.edu	37	2	86459843	86459843	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:86459843G>T	uc002srh.3	-	6	644	c.500C>A	c.(499-501)CCC>CAC	p.P167H	REEP1_uc010ytg.1_Missense_Mutation_p.P146H|REEP1_uc010yth.1_Missense_Mutation_p.P140H|REEP1_uc010yti.1_Missense_Mutation_p.P89T	NM_022912	NP_075063	Q9H902	REEP1_HUMAN	receptor accessory protein 1 isoform 2	167					cell death|protein insertion into membrane	integral to membrane|mitochondrial membrane	olfactory receptor binding				0						GGGGCCCGAGGGAGCAGGGGC	0.652													19	21					1.28384e-07	1.62686e-07	0.001882	1	0
SMYD1	150572	broad.mit.edu	37	2	88383879	88383879	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:88383879A>G	uc002ssr.2	+	2	184	c.182A>G	c.(181-183)AAG>AGG	p.K61R	SMYD1_uc002ssq.1_Missense_Mutation_p.K56R	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	61	MYND-type.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGGCAGGAGAAGCTCCATCGC	0.522													34	34					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	2	89160271	89160271	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:89160271C>T	uc010ytr.1	-	239		c.9519G>A			uc002sti.1_RNA|uc002stj.1_Intron					Parts of antibodies, mostly variable regions.																		AATTTTCTATCCCTTACTCAT	0.373													12	7					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	2	89292011	89292011	+	RNA	SNP	C	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:89292011C>A	uc010ytr.1	-	82		c.7195G>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AAATCTGTCCCAGATCCACTG	0.478													38	78					7.04047e-22	8.9519e-22	0.005524	1	0
ANKRD20B	729171	broad.mit.edu	37	2	95456839	95456839	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:95456839G>A	uc010fhp.2	-	21		c.3445C>T			uc002stu.1_5'Flank	NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GCTTACCAGTGGATTATAGAG	0.289													20	45					0	0	0.002299	0	0
PROM2	150696	broad.mit.edu	37	2	95940267	95940267	+	Translation_Start_Site	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:95940267G>T	uc002suh.1	+	1	67	c.-66G>T	c.(-68--64)AAGGA>AATGA		PROM2_uc002sui.2_Translation_Start_Site|PROM2_uc002suj.2_Translation_Start_Site|PROM2_uc002suk.2_Translation_Start_Site|PROM2_uc002sul.2_Translation_Start_Site	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor							apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						GGCTGGAGAAGGATGTATGGC	0.622													5	22					1.23904e-05	1.56554e-05	0.000602	1	0
FER1L5	90342	broad.mit.edu	37	2	97363282	97363282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:97363282G>A	uc010fia.2	+	37	4184	c.4184G>A	c.(4183-4185)AGA>AAA	p.R1395K	FER1L5_uc002sws.3_Missense_Mutation_p.R113K|FER1L5_uc010fib.1_RNA|FER1L5_uc002swt.3_Missense_Mutation_p.R113K|FER1L5_uc010yus.1_Missense_Mutation_p.R112K	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1395						integral to membrane				ovary(1)	1						TACCTCTACAGAAAGTTCTGG	0.562													11	15					0	0	0.001855	0	0
CNGA3	1261	broad.mit.edu	37	2	99012478	99012478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:99012478C>T	uc002syt.2	+	8	1262	c.845C>T	c.(844-846)TCC>TTC	p.S282F	CNGA3_uc002syu.2_Missense_Mutation_p.S264F|CNGA3_uc010fij.2_Missense_Mutation_p.S286F	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	282					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CTGAAGTTTTCCCGGCTCTTT	0.488													14	27					0	0	0.001855	0	0
REV1	51455	broad.mit.edu	37	2	100058806	100058806	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:100058806T>C	uc002tad.2	-	5	688	c.476A>G	c.(475-477)AAT>AGT	p.N159S	REV1_uc002tac.2_Missense_Mutation_p.N159S|REV1_uc002tae.1_Missense_Mutation_p.N138S	NM_016316	NP_057400	Q9UBZ9	REV1_HUMAN	REV1-like isoform 1	159					DNA replication|error-prone translesion synthesis|response to UV	nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|magnesium ion binding|protein binding			ovary(2)	2						TTTGGCTATATTGCTTGGACC	0.393								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					35	25					0	0	0.001951	0	0
NMS	129521	broad.mit.edu	37	2	101086975	101086975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:101086975C>T	uc002tan.1	+	1	32	c.25C>T	c.(25-27)CCT>TCT	p.P9S		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	9					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						TCCCCAGTTCCCTCTCATCTT	0.542													46	78					0	0	0.003610	0	0
IL18R1	8809	broad.mit.edu	37	2	102984340	102984340	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:102984340G>A	uc002tbw.3	+	3	264	c.114G>A	c.(112-114)CTG>CTA	p.L38L	IL18R1_uc010ywb.1_Silent_p.L38L|IL18R1_uc010ywc.1_Silent_p.L38L|IL18R1_uc010ywd.1_Intron|IL18R1_uc010fiy.2_Silent_p.L38L	NM_003855	NP_003846	Q13478	IL18R_HUMAN	interleukin 18 receptor 1 precursor	38	Ig-like C2-type 1.|Extracellular (Potential).				innate immune response	integral to membrane|plasma membrane	interleukin-1 receptor activity			ovary(2)|pancreas(1)	3						CTTTCTATCTGAAACATTGCT	0.388													13	19					0	0	0.002450	0	0
SLC9A4	389015	broad.mit.edu	37	2	103120101	103120101	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:103120101C>T	uc002tbz.3	+	3	1372	c.915C>T	c.(913-915)ATC>ATT	p.I305I		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	305	Helical; Name=I/M7; (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						AGCCACTCATCGTCTTCATGT	0.428													33	34					0	0	0.003271	0	0
RGPD4	285190	broad.mit.edu	37	2	108488746	108488746	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:108488746G>A	uc010ywk.1	+	20	4368	c.4286G>A	c.(4285-4287)TGG>TAG	p.W1429*	RGPD4_uc002tdu.2_Nonsense_Mutation_p.W616*|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1429	RanBD1 2.				intracellular transport		binding			skin(2)	2						GTATGGGTGTGGACTGCATGT	0.373													88	102					0	0	0.003610	0	0
ACOXL	55289	broad.mit.edu	37	2	111666453	111666453	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:111666453C>T	uc002tgr.3	+	11	1100	c.876C>T	c.(874-876)GCC>GCT	p.A292A	ACOXL_uc010fkc.2_Silent_p.A292A|ACOXL_uc010yxk.1_Silent_p.A292A	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	292					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						CCCACCTGGCCACAGCCTTGG	0.547													17	42					0	0	0.004007	0	0
ANAPC1	64682	broad.mit.edu	37	2	112541923	112541923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:112541923G>A	uc002thi.2	-	41	5219	c.4972C>T	c.(4972-4974)CCA>TCA	p.P1658S		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	1658					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						TGGAGTTCTGGAAGAAGGGTA	0.438													20	91					0	0	0.006320	0	0
CKAP2L	150468	broad.mit.edu	37	2	113514124	113514124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:113514124G>A	uc002tie.2	-	4	903	c.824C>T	c.(823-825)TCA>TTA	p.S275L	CKAP2L_uc002tif.2_Intron|CKAP2L_uc010yxp.1_Missense_Mutation_p.S110L|CKAP2L_uc010yxq.1_Missense_Mutation_p.S110L	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	275						centrosome					0						AACCGTCCTTGAGGGTTTTAC	0.398													46	52					0	0	0.003610	0	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													2	12					0	0	0.004672	0	0
CCDC93	54520	broad.mit.edu	37	2	118753059	118753059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:118753059C>T	uc002tlj.2	-	6	608	c.482G>A	c.(481-483)AGA>AAA	p.R161K	CCDC93_uc010fld.1_Missense_Mutation_p.R161K	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	161										large_intestine(1)|ovary(1)	2						CTTTTCTTTTCTCTTTATGAA	0.413													17	31					0	0	0.004007	0	0
MARCO	8685	broad.mit.edu	37	2	119748178	119748178	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:119748178G>A	uc002tln.1	+	13	1209	c.1077G>A	c.(1075-1077)CAG>CAA	p.Q359Q	MARCO_uc010yyf.1_Silent_p.Q281Q	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	359	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TTCAAGGACAGCAAGGAAGAA	0.463													16	27					0	0	0.004007	0	0
MARCO	8685	broad.mit.edu	37	2	119750850	119750850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:119750850G>A	uc002tln.1	+	16	1535	c.1403G>A	c.(1402-1404)GGA>GAA	p.G468E	MARCO_uc010yyf.1_Missense_Mutation_p.G390E	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	468	SRCR.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TACTCCAAAGGAAGGGCCCTG	0.547													28	37					0	0	0.006320	0	0
C1QL2	165257	broad.mit.edu	37	2	119915753	119915753	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:119915753C>T	uc002tlo.2	-	1	719	c.93G>A	c.(91-93)ATG>ATA	p.M31I		NM_182528	NP_872334	Q7Z5L3	C1QL2_HUMAN	complement component 1, q subcomponent-like 2	31						collagen				pancreas(1)	1						GGTCGCAGATCATGCGGCAGG	0.721										HNSCC(49;0.14)			4	6					0	0	0.000248	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125547701	125547701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:125547701G>A	uc002tno.2	+	18	3336	c.2972G>A	c.(2971-2973)GGG>GAG	p.G991E	CNTNAP5_uc010flu.2_Missense_Mutation_p.G992E	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	991	EGF-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CCTTATGAAGGGCCCTTTTGC	0.522													8	11					0	0	0.003080	0	0
MYO7B	4648	broad.mit.edu	37	2	128388855	128388855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:128388855C>T	uc002top.2	+	36	4987	c.4934C>T	c.(4933-4935)TCC>TTC	p.S1645F	MYO7B_uc002tor.1_Missense_Mutation_p.S498F|MYO7B_uc002tos.1_5'Flank|MYO7B_uc002tot.2_5'Flank	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1645	SH3 2.|MyTH4 2.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		TGGGCCTATTCCTGCGAGCCG	0.642													15	11					0	0	0.003163	0	0
POTEF	728378	broad.mit.edu	37	2	130877771	130877771	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:130877771G>A	uc010fmh.2	-	3	718	c.318C>T	c.(316-318)TTC>TTT	p.F106F		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	106						cell cortex	ATP binding			skin(3)|ovary(2)	5						TGCAGCAGGGGAAGCAGTGGC	0.602													40	115					0	0	0.003610	0	0
POTEF	728378	broad.mit.edu	37	2	130878064	130878064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:130878064G>A	uc010fmh.2	-	3	425	c.25C>T	c.(25-27)CCG>TCG	p.P9S		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	9						cell cortex	ATP binding			skin(3)|ovary(2)	5						GAGGCAGCCGGCATGGAATCA	0.542													32	89					0	0	0.003610	0	0
FAM123C	205147	broad.mit.edu	37	2	131519860	131519860	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:131519860T>G	uc002trw.2	+	2	405	c.215T>G	c.(214-216)CTG>CGG	p.L72R	FAM123C_uc010fmv.2_Missense_Mutation_p.L72R|FAM123C_uc010fms.1_Missense_Mutation_p.L72R|FAM123C_uc010fmt.1_Missense_Mutation_p.L72R|FAM123C_uc010fmu.1_Missense_Mutation_p.L72R	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	72										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGGGCGCAGCTGGACCCCAAA	0.642													10	4					0	0	0.006214	0	0
POTEE	445582	broad.mit.edu	37	2	132021764	132021764	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:132021764C>T	uc002tsn.2	+	15	2788	c.2736C>T	c.(2734-2736)ATC>ATT	p.I912I	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Silent_p.I512I|POTEE_uc002tsl.2_Silent_p.I494I|POTEE_uc010fmy.1_Silent_p.I376I	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	912	Actin-like.						ATP binding				0						TGCGTGACATCAAAGAGAAGC	0.602													24	112					0	0	0.002836	0	0
GPR39	2863	broad.mit.edu	37	2	133175080	133175080	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:133175080G>A	uc002ttl.2	+	1	934	c.465G>A	c.(463-465)CTG>CTA	p.L155L		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	155	Helical; Name=4; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						TGAAGCTGCTGATTGGCTTCG	0.617													13	19					0	0	0.002450	0	0
GPR39	2863	broad.mit.edu	37	2	133175290	133175290	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:133175290C>T	uc002ttl.2	+	1	1144	c.675C>T	c.(673-675)TTC>TTT	p.F225F		NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	225	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						CCAGCATCTTCGGCGCCTTCG	0.607													30	32					0	0	0.007291	0	0
NCKAP5	344148	broad.mit.edu	37	2	133539521	133539521	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:133539521G>A	uc002ttp.2	-	14	5237	c.4863C>T	c.(4861-4863)CTC>CTT	p.L1621L	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1621							protein binding				0						ACCTGTTCAAGAGTTCCGTCA	0.453													7	73					0	0	0.001984	0	0
ACMSD	130013	broad.mit.edu	37	2	135659392	135659392	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:135659392C>T	uc002ttz.2	+	10	1040	c.973C>T	c.(973-975)CTG>TTG	p.L325L	ACMSD_uc002tua.2_Silent_p.L267L|uc010zbe.1_Intron	NM_138326	NP_612199	Q8TDX5	ACMSD_HUMAN	aminocarboxymuconate semialdehyde decarboxylase	325					quinolinate metabolic process|tryptophan catabolic process	cytosol	aminocarboxymuconate-semialdehyde decarboxylase activity|metal ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.115)		CGGCAATGCCCTGGCATTTTT	0.294													22	20					0	0	0.004656	0	0
R3HDM1	23518	broad.mit.edu	37	2	136396198	136396198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:136396198C>T	uc002tuo.2	+	12	1284	c.914C>T	c.(913-915)TCC>TTC	p.S305F	R3HDM1_uc010fni.2_Missense_Mutation_p.S303F|R3HDM1_uc002tup.2_Missense_Mutation_p.S249F|R3HDM1_uc010zbh.1_Missense_Mutation_p.S137F	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	305							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		TCCCTGTGTTCCCAAGAGAAT	0.299													6	32					0	0	0.003080	0	0
LCT	3938	broad.mit.edu	37	2	136548269	136548269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:136548269C>T	uc002tuu.1	-	15	5305	c.5294G>A	c.(5293-5295)AGG>AAG	p.R1765K		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1765	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GTAGTAGATCCTTGCAGTGTC	0.502													18	39					0	0	0.006122	0	0
THSD7B	80731	broad.mit.edu	37	2	137872796	137872796	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:137872796G>A	uc002tva.1	+	4	1209	c.1209G>A	c.(1207-1209)GGG>GGA	p.G403G	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.G293G	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GTGGCGGTGGGATCCAGACCC	0.602													6	16					0	0	0.001168	0	0
LRP1B	53353	broad.mit.edu	37	2	141122324	141122324	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:141122324G>A	uc002tvj.1	-	72	12009	c.11037C>T	c.(11035-11037)TTC>TTT	p.F3679F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3679	Extracellular (Potential).|LDL-receptor class A 30.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TATTGCAAAGGAACTCATCAG	0.403										TSP Lung(27;0.18)			8	11					0	0	0.004482	0	0
LRP1B	53353	broad.mit.edu	37	2	141607776	141607776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:141607776C>T	uc002tvj.1	-	29	5806	c.4834G>A	c.(4834-4836)GAC>AAC	p.D1612N	LRP1B_uc010fnl.1_Missense_Mutation_p.D794N	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1612	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCATCGAAGTCTATCACAGTA	0.373										TSP Lung(27;0.18)			23	50					0	0	0.003330	0	0
MBD5	55777	broad.mit.edu	37	2	149226637	149226637	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:149226637C>T	uc002twm.3	+	9	2113	c.1125C>T	c.(1123-1125)ATC>ATT	p.I375I	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Silent_p.I375I|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	375	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		ACCCTGTTATCATTAATCCAA	0.413													29	41					0	0	0.001512	0	0
NEB	4703	broad.mit.edu	37	2	152409917	152409917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:152409917C>T	uc010fnx.2	-	99	14814	c.14623G>A	c.(14623-14625)GAT>AAT	p.D4875N	NEB_uc002txr.2_Missense_Mutation_p.D1298N	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4875	Nebulin 133.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCACATCATCACGTAGATCA	0.418													12	33					0	0	0.000978	0	0
NEB	4703	broad.mit.edu	37	2	152427047	152427047	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:152427047G>A	uc010fnx.2	-	80	12170	c.11979C>T	c.(11977-11979)ATC>ATT	p.I3993I	NEB_uc002txr.2_Silent_p.I416I	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3993	Nebulin 109.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGGCAGCCTGGATGGGGATGG	0.498													9	8					0	0	0.000978	0	0
TANC1	85461	broad.mit.edu	37	2	160035306	160035306	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:160035306C>T	uc002uag.2	+	14	2416	c.2142C>T	c.(2140-2142)TTC>TTT	p.F714F	TANC1_uc010fol.1_Silent_p.F608F|TANC1_uc010zcm.1_Silent_p.F706F|TANC1_uc010fom.1_Silent_p.F520F|TANC1_uc002uai.1_RNA	NM_033394	NP_203752	Q9C0D5	TANC1_HUMAN	tetratricopeptide repeat, ankyrin repeat and	714						cell junction|postsynaptic density|postsynaptic membrane	binding			ovary(2)|central_nervous_system(1)	3						TGGACCTTTTCCAGAGGGGCC	0.552													19	36					0	0	0.001216	0	0
MARCH7	64844	broad.mit.edu	37	2	160599677	160599677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:160599677C>T	uc002uax.2	+	3	381	c.259C>T	c.(259-261)CAT>TAT	p.H87Y	MARCH7_uc010foq.2_Missense_Mutation_p.H87Y|MARCH7_uc010zcn.1_Missense_Mutation_p.H87Y|MARCH7_uc010for.2_Missense_Mutation_p.H49Y	NM_022826	NP_073737	Q9H992	MARH7_HUMAN	axotrophin	87	Ser-rich.						ligase activity|zinc ion binding				0						GCAACGGGATCATGATTCAAA	0.418													25	47					0	0	0.002780	0	0
TBR1	10716	broad.mit.edu	37	2	162273610	162273610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:162273610G>A	uc002ubw.1	+	1	991	c.689G>A	c.(688-690)GGA>GAA	p.G230E	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	230	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						ACCAAACAGGGAAGGTAATAC	0.592													22	27					0	0	0.001523	0	0
FAP	2191	broad.mit.edu	37	2	163075645	163075645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:163075645G>A	uc002ucd.2	-	8	743	c.535C>T	c.(535-537)CCA>TCA	p.P179S	FAP_uc010zct.1_Missense_Mutation_p.P154S|FAP_uc010fpd.2_Intron|FAP_uc010fpe.1_Missense_Mutation_p.P146S	NM_004460	NP_004451	Q12884	SEPR_HUMAN	fibroblast activation protein, alpha subunit	179	Extracellular (Potential).				endothelial cell migration|negative regulation of extracellular matrix disassembly|proteolysis	cell junction|integral to membrane|invadopodium membrane|lamellipodium membrane	dipeptidyl-peptidase activity|metalloendopeptidase activity|protein homodimerization activity|serine-type endopeptidase activity			ovary(3)	3						TGAAAAGGTGGATCTCCTGGT	0.328													30	41					0	0	0.001512	0	0
IFIH1	64135	broad.mit.edu	37	2	163144699	163144699	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:163144699T>C	uc002uce.2	-	5	1263	c.1041A>G	c.(1039-1041)TTA>TTG	p.L347L		NM_022168	NP_071451	Q9BYX4	IFIH1_HUMAN	interferon induced with helicase C domain 1	347	Helicase ATP-binding.				detection of virus|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|regulation of apoptosis	cytosol|nucleus	ATP binding|DNA binding|double-stranded RNA binding|helicase activity|protein binding|ribonucleoprotein binding|zinc ion binding			ovary(1)	1						TCTTCTTGTCTAAGTGATCCT	0.398													7	23					0	0	0.001984	0	0
KCNH7	90134	broad.mit.edu	37	2	163250911	163250911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:163250911C>T	uc002uch.1	-	12	2910	c.2698G>A	c.(2698-2700)GAA>AAA	p.E900K		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	900	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTCTCTCCTTCACTTTCAAAT	0.343													5	8					0	0	0.001168	0	0
KCNH7	90134	broad.mit.edu	37	2	163374646	163374646	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:163374646G>A	uc002uch.1	-	4	698	c.486C>T	c.(484-486)TTC>TTT	p.F162F	KCNH7_uc002uci.2_Silent_p.F162F	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	162	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TCAGACCAGGGAATTTGAACC	0.388													6	4					0	0	0.001168	0	0
SCN2A	6326	broad.mit.edu	37	2	166170230	166170230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:166170230C>T	uc002udc.2	+	9	1425	c.1135C>T	c.(1135-1137)CGT>TGT	p.R379C	SCN2A_uc002udd.2_Missense_Mutation_p.R379C|SCN2A_uc002ude.2_Missense_Mutation_p.R379C	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	379	I.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	GTCCTTATTTCGTCTCATGAC	0.413													17	34					0	0	0.004990	0	0
SCN9A	6335	broad.mit.edu	37	2	167142982	167142982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:167142982G>A	uc010fpl.2	-	11	1807	c.1466C>T	c.(1465-1467)TCC>TTC	p.S489F	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.S360F|SCN9A_uc002uds.1_Missense_Mutation_p.S360F|SCN9A_uc002udt.1_Missense_Mutation_p.S360F	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	489						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CTCTCCACTGGAGAGCTTCTT	0.418													24	52					0	0	0.002780	0	0
SCN9A	6335	broad.mit.edu	37	2	167168167	167168167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:167168167C>T	uc010fpl.2	-	2	441	c.100G>A	c.(100-102)GAA>AAA	p.E34K		NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	34						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCTTTGGGTTCCTTTGATTTT	0.468													32	66					0	0	0.002096	0	0
XIRP2	129446	broad.mit.edu	37	2	168096396	168096396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:168096396C>T	uc002udx.2	+	5	908	c.890C>T	c.(889-891)TCA>TTA	p.S297L	XIRP2_uc010fpn.2_Missense_Mutation_p.S330L|XIRP2_uc010fpo.2_Missense_Mutation_p.S297L|XIRP2_uc010fpp.2_Missense_Mutation_p.S297L|XIRP2_uc002udy.2_Missense_Mutation_p.S122L|XIRP2_uc010fpq.2_Missense_Mutation_p.S75L|XIRP2_uc010fpr.2_Missense_Mutation_p.S75L	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	122					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTTGGCACTTCAAGAAGCAGC	0.378													22	34					0	0	0.002780	0	0
XIRP2	129446	broad.mit.edu	37	2	168100225	168100225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:168100225G>A	uc002udx.2	+	8	2341	c.2323G>A	c.(2323-2325)GAA>AAA	p.E775K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.E600K|XIRP2_uc010fpq.2_Missense_Mutation_p.E553K|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	600	Xin 7.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GTGGATGTTTGAAACACAGCC	0.403													13	12					0	0	0.003163	0	0
XIRP2	129446	broad.mit.edu	37	2	168106316	168106316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:168106316G>A	uc002udx.2	+	8	8432	c.8414G>A	c.(8413-8415)AGA>AAA	p.R2805K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R2630K|XIRP2_uc010fpq.2_Missense_Mutation_p.R2583K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.R151K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2630					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AGGAAGCAAAGAGAATTTAGC	0.403													13	10					0	0	0.002450	0	0
ABCB11	8647	broad.mit.edu	37	2	169787294	169787294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:169787294C>T	uc002ueo.1	-	25	3418	c.3292G>A	c.(3292-3294)GGT>AGT	p.G1098S	ABCB11_uc010zda.1_Missense_Mutation_p.G540S|ABCB11_uc010zdb.1_Missense_Mutation_p.G574S	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1098	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	ACTGAGAGACCATTCAGAACT	0.453													12	15					0	0	0.000978	0	0
ABCB11	8647	broad.mit.edu	37	2	169825918	169825918	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:169825918G>A	uc002ueo.1	-	16	2079	c.1953C>T	c.(1951-1953)TTC>TTT	p.F651F	ABCB11_uc010zda.1_Silent_p.F93F|ABCB11_uc010zdb.1_Silent_p.F127F	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	651	Cytoplasmic (Potential).|ABC transporter 1.|Interaction with HAX1 (By similarity).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TCACTAGAGTGAAGTAAACAC	0.408													8	4					0	0	0.003080	0	0
LRP2	4036	broad.mit.edu	37	2	170063573	170063573	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:170063573G>A	uc002ues.2	-	39	6870	c.6657C>T	c.(6655-6657)TTC>TTT	p.F2219F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2219	LDL-receptor class B 22.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TACAGTCAAGGAAAGAACGCT	0.493													33	69					0	0	0.003755	0	0
LRP2	4036	broad.mit.edu	37	2	170145580	170145580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:170145580G>A	uc002ues.2	-	9	1211	c.998C>T	c.(997-999)CCC>CTC	p.P333L	LRP2_uc010zdf.1_Missense_Mutation_p.P333L	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	333	EGF-like 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	ATAACCTGGGGGACAAAAACA	0.493													28	50					0	0	0.006320	0	0
METTL5	29081	broad.mit.edu	37	2	170677747	170677747	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:170677747C>T	uc002ufn.2	-	3	507	c.261G>A	c.(259-261)TTG>TTA	p.L87L	METTL5_uc002ufo.2_Silent_p.L87L|METTL5_uc002ufp.2_Silent_p.L87L|METTL5_uc002ufq.1_Silent_p.L87L	NM_014168	NP_054887	Q9NRN9	METL5_HUMAN	methyltransferase like 5	87							methyltransferase activity|nucleic acid binding			central_nervous_system(1)	1						TAAATATTTCCAATGCGTCTT	0.338													15	41					0	0	0.004990	0	0
ZAK	51776	broad.mit.edu	37	2	174074498	174074498	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:174074498C>T	uc002uhz.2	+	10	986	c.786C>T	c.(784-786)TCC>TCT	p.S262S	ZAK_uc002uhx.2_Silent_p.S262S|ZAK_uc002uhy.2_Silent_p.S262S|ZAK_uc010zei.1_Silent_p.S161S|ZAK_uc002uia.1_Silent_p.S262S|uc002uib.2_RNA	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1	262	Protein kinase.				activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			TCCTGGAGTCCATGTCAAATG	0.468													16	27					0	0	0.003163	0	0
PDE11A	50940	broad.mit.edu	37	2	178879178	178879178	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:178879178A>G	uc002ulq.2	-	2	1240	c.922T>C	c.(922-924)TTC>CTC	p.F308L	PDE11A_uc002ulr.2_Missense_Mutation_p.F58L|PDE11A_uc002ult.1_Missense_Mutation_p.F58L	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	308	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			TCATCATTGAATCGTCGATCC	0.398									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				11	13					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179398792	179398792	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179398792C>T	uc010zfg.1	-	307	95070	c.94846G>A	c.(94846-94848)GAA>AAA	p.E31616K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25311K|TTN_uc010zfi.1_Missense_Mutation_p.E25244K|TTN_uc010zfj.1_Missense_Mutation_p.E25119K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32543							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGGTGATTTCGTATTTCTCA	0.403													30	29					0	0	0.001786	0	0
TTN	7273	broad.mit.edu	37	2	179413262	179413263	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179413262_179413263CC>TT	uc010zfg.1	-	288	85610_85611	c.85386_85387GG>AA	c.(85384-85389)CGGGGA>CGAAGA	p.G28463R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G22158R|TTN_uc010zfi.1_Missense_Mutation_p.G22091R|TTN_uc010zfj.1_Missense_Mutation_p.G21966R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29390							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGCAGATCCCCGGGTCACAT	0.51													39	64					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179427023	179427023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179427023C>T	uc010zfg.1	-	275	76356	c.76132G>A	c.(76132-76134)GAT>AAT	p.D25378N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D19073N|TTN_uc010zfi.1_Missense_Mutation_p.D19006N|TTN_uc010zfj.1_Missense_Mutation_p.D18881N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26305							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTCTTGGATCACTTCTTCCC	0.413													13	19					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179430967	179430967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179430967C>T	uc010zfg.1	-	275	72412	c.72188G>A	c.(72187-72189)GGT>GAT	p.G24063D	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G17758D|TTN_uc010zfi.1_Missense_Mutation_p.G17691D|TTN_uc010zfj.1_Missense_Mutation_p.G17566D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24990							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTGAATTCACCTTCCTCTCG	0.388													31	43					0	0	0.001786	0	0
TTN	7273	broad.mit.edu	37	2	179433237	179433237	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179433237A>G	uc010zfg.1	-	275	70142	c.69918T>C	c.(69916-69918)AAT>AAC	p.N23306N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.N17001N|TTN_uc010zfi.1_Silent_p.N16934N|TTN_uc010zfj.1_Silent_p.N16809N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24233							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GACCAACAACATTGGCAACTG	0.398													13	25					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179435234	179435234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179435234C>T	uc010zfg.1	-	275	68145	c.67921G>A	c.(67921-67923)GAA>AAA	p.E22641K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E16336K|TTN_uc010zfi.1_Missense_Mutation_p.E16269K|TTN_uc010zfj.1_Missense_Mutation_p.E16144K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23568							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGGTCCTTCAGGTGGCCCT	0.438													5	16					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179496982	179496982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179496982C>T	uc010zfg.1	-	185	36159	c.35935G>A	c.(35935-35937)GAA>AAA	p.E11979K	TTN_uc010zfh.1_Missense_Mutation_p.E5674K|TTN_uc010zfi.1_Missense_Mutation_p.E5607K|TTN_uc010zfj.1_Missense_Mutation_p.E5482K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12906							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTTCCCTTCGTCTTGCATT	0.433													3	5					0	0	0.000248	0	0
TTN	7273	broad.mit.edu	37	2	179575440	179575440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179575440C>T	uc010zfg.1	-	95	24876	c.24652G>A	c.(24652-24654)GGA>AGA	p.G8218R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4879R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9145							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAGAATCTCCTTTGTCTACT	0.443													31	51					0	0	0.002836	0	0
TTN	7273	broad.mit.edu	37	2	179578871	179578871	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179578871G>A	uc010zfg.1	-	89	23006	c.22782C>T	c.(22780-22782)TCC>TCT	p.S7594S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S4255S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8521							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAACTTTTATGGATTCTGGCT	0.378													14	18					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179579087	179579087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179579087C>T	uc010zfg.1	-	88	22906	c.22682G>A	c.(22681-22683)GGA>GAA	p.G7561E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4222E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8488							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGTATTTTCCAGCATTGGC	0.398													28	40					0	0	0.007291	0	0
TTN	7273	broad.mit.edu	37	2	179586793	179586793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179586793C>T	uc010zfg.1	-	75	19089	c.18865G>A	c.(18865-18867)GAT>AAT	p.D6289N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D2950N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7216							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTCAAAATCAGCACTTTCT	0.413													31	54					0	0	0.001786	0	0
TTN	7273	broad.mit.edu	37	2	179587111	179587111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179587111G>A	uc010zfg.1	-	74	18895	c.18671C>T	c.(18670-18672)TCA>TTA	p.S6224L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S2885L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7151							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTACAAATGAAGTCTGTAG	0.418													8	11					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179616512	179616512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179616512G>A	uc002unb.2	-	46	10839	c.10615C>T	c.(10615-10617)CAT>TAT	p.H3539Y	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGATTGTTATGAAACCAAGTC	0.388													8	23					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179649068	179649068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179649068G>A	uc010zfg.1	-	16	2728	c.2504C>T	c.(2503-2505)GCC>GTC	p.A835V	TTN_uc010zfh.1_Missense_Mutation_p.A789V|TTN_uc010zfi.1_Missense_Mutation_p.A789V|TTN_uc010zfj.1_Missense_Mutation_p.A789V|TTN_uc002unb.2_Missense_Mutation_p.A835V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	835							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGCACTACCGGCTATTGATGC	0.448													23	15					0	0	0.002299	0	0
CCDC141	285025	broad.mit.edu	37	2	179701879	179701879	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179701879G>T	uc002unf.1	-	13	2399	c.2342C>A	c.(2341-2343)ACT>AAT	p.T781N	CCDC141_uc002une.1_Missense_Mutation_p.T231N	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	781							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TTGGGTTTTAGTGAAGTTATT	0.493													11	21					3.86212e-05	4.86809e-05	0.000673	1	0
CCDC141	285025	broad.mit.edu	37	2	179702336	179702336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179702336C>T	uc002unf.1	-	13	1942	c.1885G>A	c.(1885-1887)GAA>AAA	p.E629K	CCDC141_uc002une.1_Missense_Mutation_p.E79K	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	629							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			TCATATTCTTCCCCTGAGAGC	0.567													20	37					0	0	0.001216	0	0
CCDC141	285025	broad.mit.edu	37	2	179714835	179714835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179714835C>T	uc002unf.1	-	11	1630	c.1573G>A	c.(1573-1575)GTT>ATT	p.V525I		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	525							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			GATTCAAGAACCTCTTTGTGT	0.348													11	34					0	0	0.001855	0	0
CCDC141	285025	broad.mit.edu	37	2	179736252	179736252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:179736252C>T	uc002unf.1	-	4	439	c.382G>A	c.(382-384)GAA>AAA	p.E128K		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	128	Potential.						protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			ATAAGTGCTTCCTGAAGAAGT	0.403													24	43					0	0	0.002780	0	0
CERKL	375298	broad.mit.edu	37	2	182403982	182403982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:182403982G>A	uc002unx.2	-	13	1554	c.1453C>T	c.(1453-1455)CCA>TCA	p.P485S	CERKL_uc002uny.2_Missense_Mutation_p.P459S|CERKL_uc010zfm.1_Missense_Mutation_p.P441S|CERKL_uc002unz.2_Missense_Mutation_p.P207S|CERKL_uc002uoa.2_Missense_Mutation_p.P390S|CERKL_uc002uob.2_Missense_Mutation_p.P207S|CERKL_uc002uoc.2_Missense_Mutation_p.P346S|CERKL_uc010frk.2_RNA|CERKL_uc002unw.2_Missense_Mutation_p.P55S	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	485					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TCAACAAATGGAAAATTGAAC	0.353													12	21					0	0	0.001368	0	0
SSFA2	6744	broad.mit.edu	37	2	182766562	182766562	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:182766562C>T	uc002uoi.2	+	8	1104	c.782C>T	c.(781-783)TCC>TTC	p.S261F	SSFA2_uc002uoh.2_Missense_Mutation_p.S261F|SSFA2_uc002uoj.2_Missense_Mutation_p.S261F|SSFA2_uc002uok.2_RNA|SSFA2_uc010zfo.1_Missense_Mutation_p.S108F|SSFA2_uc002uol.2_Missense_Mutation_p.S108F	NM_001130445	NP_001123917	P28290	SSFA2_HUMAN	sperm specific antigen 2 isoform 1	261						cytoplasm|plasma membrane	actin binding			breast(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0856)			TCTCAAGTCTCCGGGACGCCC	0.423													15	32					0	0	0.004990	0	0
NUP35	129401	broad.mit.edu	37	2	183993134	183993134	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:183993134A>T	uc002upf.2	+	2	263	c.160A>T	c.(160-162)ATT>TTT	p.I54F	NUP35_uc010zfs.1_Missense_Mutation_p.I36F|NUP35_uc010zft.1_5'UTR|NUP35_uc002upg.2_RNA	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa	54					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						ACCTCGATCAATTAGTGGCCC	0.418													9	23					0	0	0.000673	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802974	185802974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:185802974C>T	uc002uph.2	+	4	3445	c.2851C>T	c.(2851-2853)CCT>TCT	p.P951S		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	951						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAAGCAAATTCCTTTTCAGGT	0.388													30	36					0	0	0.001512	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802980	185802980	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:185802980C>T	uc002uph.2	+	4	3451	c.2857C>T	c.(2857-2859)CAG>TAG	p.Q953*		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	953						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AATTCCTTTTCAGGTGCCTAA	0.383													33	35					0	0	0.002096	0	0
Unknown	0	broad.mit.edu	37	2	186689207	186689207	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:186689207G>A	uc002upm.2	+	4		c.3555G>A			uc010zfu.1_Missense_Mutation_p.E1323K					Homo sapiens cDNA FLJ44048 fis, clone TESTI4030669.																		AATATTAGAAGGTTGGACTCC	0.289													5	6					0	0	0.000602	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187712504	187712504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:187712504G>A	uc002upu.1	-	2	224	c.184C>T	c.(184-186)CAC>TAC	p.H62Y		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	62	SWIM-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TTACAAACGTGAGGATTTCCT	0.343													28	31					0	0	0.001512	0	0
SDPR	8436	broad.mit.edu	37	2	192700988	192700988	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:192700988G>A	uc002utb.2	-	2	1269	c.939C>T	c.(937-939)ACC>ACT	p.T313T		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	313						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	CTTCTGACTTGGTCTCATTTT	0.532													58	76					0	0	0.003610	0	0
SF3B1	23451	broad.mit.edu	37	2	198273101	198273101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:198273101G>A	uc002uue.2	-	8	1157	c.1109C>T	c.(1108-1110)CCT>CTT	p.P370L		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	370	Interaction with PPP1R8.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			ACCTGGAGTAGGGGTAGCCAT	0.423													24	48					0	0	0.002299	0	0
SF3B1	23451	broad.mit.edu	37	2	198274716	198274716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:198274716G>A	uc002uue.2	-	7	730	c.682C>T	c.(682-684)CCT>TCT	p.P228S		NM_012433	NP_036565	O75533	SF3B1_HUMAN	splicing factor 3b, subunit 1 isoform 1	228	Interaction with PPP1R8.				nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nuclear speck|U12-type spliceosomal complex	protein binding			pancreas(3)|ovary(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.246)			CTTAAGGAAGGAGTATGCCCA	0.403													18	29					0	0	0.001216	0	0
CLK1	1195	broad.mit.edu	37	2	201722764	201722764	+	Silent	SNP	G	A	A	rs140826426	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:201722764G>A	uc002uwe.2	-	6	778	c.597C>T	c.(595-597)TAC>TAT	p.Y199Y	CLK1_uc002uwd.2_Silent_p.Y22Y|CLK1_uc010zhi.1_Silent_p.Y241Y|CLK1_uc002uwf.2_5'UTR|CLK1_uc002uwg.2_Silent_p.Y48Y|CLK1_uc010fsv.2_RNA	NM_004071	NP_004062	P49759	CLK1_HUMAN	CDC-like kinase 1 isoform 1	199	Protein kinase.				cell proliferation	nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			pancreas(2)	2						CAGCTTCACAGTATCTATCCA	0.378													40	40					0	0	0.004878	0	0
ALS2	57679	broad.mit.edu	37	2	202569290	202569290	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:202569290G>A	uc002uyo.2	-	32	5081	c.4725C>T	c.(4723-4725)ATC>ATT	p.I1575I	ALS2_uc010ftl.2_RNA	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	1575	VPS9.				cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						AAGTCTGCTGGATGACCTTAA	0.408													15	23					0	0	0.006122	0	0
CTLA4	1493	broad.mit.edu	37	2	204735491	204735491	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:204735491C>T	uc002vak.1	+	2	449	c.292C>T	c.(292-294)CTA>TTA	p.L98L	CTLA4_uc002val.1_Silent_p.L98L|CTLA4_uc010fty.1_Intron|CTLA4_uc010ftz.1_Intron	NM_005214	NP_005205	P16410	CTLA4_HUMAN	cytotoxic T-lymphocyte-associated protein 4	98	Ig-like V-type.|Extracellular (Potential).				B cell receptor signaling pathway|immune response|negative regulation of B cell proliferation|negative regulation of regulatory T cell differentiation|positive regulation of apoptosis|response to DNA damage stimulus|T cell costimulation	clathrin-coated endocytic vesicle|external side of plasma membrane|Golgi apparatus|integral to plasma membrane|perinuclear region of cytoplasm					0					Abatacept(DB01281)	GTTGACCTTCCTAGATGATTC	0.547													25	64					0	0	0.005443	0	0
PARD3B	117583	broad.mit.edu	37	2	205983712	205983712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:205983712G>A	uc002var.1	+	7	955	c.748G>A	c.(748-750)GAA>AAA	p.E250K	PARD3B_uc010fub.1_Missense_Mutation_p.E250K|PARD3B_uc002vao.1_Missense_Mutation_p.E250K|PARD3B_uc002vap.1_Missense_Mutation_p.E250K|PARD3B_uc002vaq.1_Missense_Mutation_p.E250K	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	250	PDZ 1.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		ACTATTTCACGAAAATGAATG	0.348													21	33					0	0	0.002780	0	0
NRP2	8828	broad.mit.edu	37	2	206656988	206656988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:206656988G>A	uc002vaw.2	+	16	3261	c.2470G>A	c.(2470-2472)GGA>AGA	p.G824R	NRP2_uc002vax.2_Missense_Mutation_p.G819R|NRP2_uc002vay.2_Intron	NM_201266	NP_957718	O60462	NRP2_HUMAN	neuropilin 2 isoform 1 precursor	824	Extracellular (Potential).				angiogenesis|axon guidance|cell adhesion	integral to membrane|membrane fraction|plasma membrane	heparin binding|metal ion binding|semaphorin receptor activity|vascular endothelial growth factor receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGAGAGAGAAGGATATGAAGA	0.333													21	49					0	0	0.003954	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171980	207171980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:207171980G>A	uc002vbp.2	+	5	2978	c.2728G>A	c.(2728-2730)GAA>AAA	p.E910K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	910							nucleic acid binding|zinc ion binding			ovary(3)	3						TAAGGAAAATGAACCTATTGA	0.353													10	22					0	0	0.006214	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175286	207175286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:207175286C>T	uc002vbp.2	+	5	6284	c.6034C>T	c.(6034-6036)CTT>TTT	p.L2012F		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2012							nucleic acid binding|zinc ion binding			ovary(3)	3						AGTCTGTGTTCTTTCTTCTTT	0.358													4	10					0	0	0.000248	0	0
ZDBF2	57683	broad.mit.edu	37	2	207175935	207175935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:207175935C>T	uc002vbp.2	+	5	6933	c.6683C>T	c.(6682-6684)TCG>TTG	p.S2228L		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	2228							nucleic acid binding|zinc ion binding			ovary(3)	3						AAGTATATTTCGAAATACTCT	0.358													9	15					0	0	0.004482	0	0
FAM119A	151194	broad.mit.edu	37	2	208488982	208488982	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:208488982G>C	uc002vcf.2	-	2	278	c.118C>G	c.(118-120)CTG>GTG	p.L40V	FAM119A_uc002vce.2_Missense_Mutation_p.L40V|FAM119A_uc010fuk.1_Missense_Mutation_p.L40V|FAM119A_uc002vcg.3_Missense_Mutation_p.L40V	NM_145280	NP_660323	Q8WXB1	MT21A_HUMAN	hypothetical protein LOC151194	40						integral to membrane	methyltransferase activity				0				LUSC - Lung squamous cell carcinoma(261;0.0705)|Epithelial(149;0.131)|Lung(261;0.135)		GCGACTCCCAGGTGTCTCCAG	0.483													34	64					0	0	0.004878	0	0
CPS1	1373	broad.mit.edu	37	2	211540509	211540509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:211540509C>T	uc002vee.3	+	36	4351	c.4219C>T	c.(4219-4221)CCA>TCA	p.P1407S	CPS1_uc010fur.2_Missense_Mutation_p.P1413S|CPS1_uc010fus.2_Missense_Mutation_p.P956S	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1407					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CCCTGCCACCCCAGTGGCATG	0.438													24	31					0	0	0.007291	0	0
MARCH4	57574	broad.mit.edu	37	2	217142558	217142558	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:217142558C>T	uc002vgb.2	-	3	2469	c.702G>A	c.(700-702)GAG>GAA	p.E234E		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	234						Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		CCTGAACCTTCTCAATGACCG	0.567													19	30					0	0	0.001882	0	0
CXCR1	3577	broad.mit.edu	37	2	219028998	219028998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:219028998G>A	uc002vhc.2	-	2	1056	c.937C>T	c.(937-939)CGC>TGC	p.R313C		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	313	Cytoplasmic (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						AATCCATGGCGAAAATTTTGG	0.527													21	48					0	0	0.001523	0	0
CCDC108	255101	broad.mit.edu	37	2	219875569	219875569	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:219875569C>T	uc002vjl.1	-	25	4191	c.4107G>A	c.(4105-4107)CGG>CGA	p.R1369R		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1369						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCCACAAGACCCGGGCAGTGC	0.567													13	17					0	0	0.001855	0	0
ABCB6	10058	broad.mit.edu	37	2	220079733	220079733	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:220079733A>C	uc002vkc.1	-	6	1503	c.1226T>G	c.(1225-1227)TTC>TGC	p.F409C	ABCB6_uc010fwe.1_Missense_Mutation_p.F363C|ABCB6_uc010zku.1_RNA	NM_005689	NP_005680	Q9NP58	ABCB6_HUMAN	ATP-binding cassette, sub-family B, member 6	409	Helical; (Potential).|ABC transmembrane type-1.				cadmium ion transmembrane transport|cellular iron ion homeostasis|detoxification of cadmium ion|porphyrin biosynthetic process	ATP-binding cassette (ABC) transporter complex|Golgi apparatus|integral to mitochondrial outer membrane|plasma membrane|vacuolar membrane	ATP binding|efflux transmembrane transporter activity|heme binding|heme-transporting ATPase activity			breast(1)|central_nervous_system(1)	2		Renal(207;0.0474)		Epithelial(149;1.22e-06)|all cancers(144;0.000201)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCAGGCGTTGAAGAACATGCT	0.512													38	41					0	0	0.006999	0	0
PTPRN	5798	broad.mit.edu	37	2	220161722	220161722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:220161722G>A	uc002vkz.2	-	15	2310	c.2221C>T	c.(2221-2223)CCT>TCT	p.P741S	PTPRN_uc010zlc.1_Missense_Mutation_p.P651S|PTPRN_uc002vla.2_Missense_Mutation_p.P712S|uc010zld.1_5'Flank|MIR153-1_hsa-mir-153-1|MI0000463_5'Flank	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	741	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		AGGAAGTCAGGATGCCGGTTC	0.637													48	72					0	0	0.003610	0	0
PTPRN	5798	broad.mit.edu	37	2	220172277	220172277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:220172277C>T	uc002vkz.2	-	3	258	c.169G>A	c.(169-171)GGC>AGC	p.G57S	PTPRN_uc010zlc.1_5'UTR|PTPRN_uc002vla.2_Missense_Mutation_p.G57S	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	57	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		CCAAACAAGCCATCTAAGGGC	0.552													16	36					0	0	0.003163	0	0
EPHA4	2043	broad.mit.edu	37	2	222307622	222307622	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:222307622G>A	uc002vmq.2	-	11	2043	c.2001C>T	c.(1999-2001)TTC>TTT	p.F667F	EPHA4_uc002vmr.2_Silent_p.F667F|EPHA4_uc010zlm.1_Silent_p.F608F|EPHA4_uc010zln.1_Silent_p.F667F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	667	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCTCACTCAGGAAGTCTCTCC	0.498													32	49					0	0	0.001786	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884529	228884529	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:228884529G>A	uc002vpq.2	-	7	1088	c.1041C>T	c.(1039-1041)TCC>TCT	p.S347S	SPHKAP_uc002vpp.2_Silent_p.S347S|SPHKAP_uc010zlx.1_Silent_p.S347S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	347						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TATCCATCATGGAGAAATAAG	0.423													29	41					0	0	0.002096	0	0
ATG16L1	55054	broad.mit.edu	37	2	234178648	234178648	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:234178648G>A	uc002vty.2	+	6	899	c.642G>A	c.(640-642)AGG>AGA	p.R214R	ATG16L1_uc002vtx.1_Silent_p.R70R|ATG16L1_uc002vua.2_Silent_p.R214R|ATG16L1_uc002vub.2_Silent_p.R91R|ATG16L1_uc002vtz.2_Silent_p.R70R|ATG16L1_uc002vud.3_Silent_p.R130R	NM_030803	NP_110430	Q676U5	A16L1_HUMAN	APG16 autophagy 16-like isoform 1	214	Potential.				autophagic vacuole assembly|protein homooligomerization|protein transport	autophagic vacuole|pre-autophagosomal structure membrane	protein binding				0		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0539)		Epithelial(121;1.53e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000379)|LUSC - Lung squamous cell carcinoma(224;0.00619)|Lung(119;0.00732)|GBM - Glioblastoma multiforme(43;0.11)		TTCCCAACAGGAGGCGGCAAG	0.438													16	50					0	0	0.001523	0	0
UGT1A7	54577	broad.mit.edu	37	2	234590830	234590830	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:234590830C>T	uc002vut.2	+	1	247	c.247C>T	c.(247-249)CTG>TTG	p.L83L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Silent_p.L83L	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	83					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CTCATACACTCTGGAGGATCA	0.498													52	54					0	0	0.003610	0	0
COL6A3	1293	broad.mit.edu	37	2	238267682	238267682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:238267682C>T	uc002vwl.2	-	20	6689	c.6404G>A	c.(6403-6405)AGA>AAA	p.R2135K	COL6A3_uc002vwo.2_Missense_Mutation_p.R1929K|COL6A3_uc010znj.1_Missense_Mutation_p.R1528K	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2135	Triple-helical region.|Collagen-like 2.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACCTACCCTTCTTCCAGGATT	0.403													163	199					0	0	0.003610	0	0
COL6A3	1293	broad.mit.edu	37	2	238296652	238296652	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:238296652G>A	uc002vwl.2	-	4	1170	c.885C>T	c.(883-885)TCC>TCT	p.S295S	COL6A3_uc002vwo.2_Silent_p.S89S|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Silent_p.S89S|COL6A3_uc002vwr.2_Intron|COL6A3_uc010znk.1_Silent_p.S295S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	295	VWFA 2.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGGTGTCCAAGGAGAACATGG	0.547													18	41					0	0	0.006122	0	0
MYEOV2	150678	broad.mit.edu	37	2	241069409	241069410	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr2:241069409_241069410GG>AA	uc002vyu.1	-	4	299_300	c.299_300CC>TT	c.(298-300)TCC>TTT	p.S100F		NM_138336	NP_612209	Q8WXC6	MYOV2_HUMAN	hypothetical protein LOC150678 isoform 1	Error:Variant_position_missing_in_Q8WXC6_after_alignment											0		all_epithelial(40;1.56e-11)|Breast(86;0.0002)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.81e-30)|all cancers(36;1.1e-27)|OV - Ovarian serous cystadenocarcinoma(60;2.74e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.54e-06)|Lung(119;0.00361)|LUSC - Lung squamous cell carcinoma(224;0.0153)|Colorectal(34;0.0202)|COAD - Colon adenocarcinoma(134;0.143)		CGGGAACCATGGAGGACTGCTG	0.604													22	34					0	0	0.004672	0	0
SIRPG	55423	broad.mit.edu	37	20	1638346	1638346	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:1638346G>A	uc002wfm.1	-	1	80	c.15C>T	c.(13-15)GCC>GCT	p.A5A	SIRPG_uc002wfn.1_Silent_p.A5A|SIRPG_uc002wfo.1_Silent_p.A5A	NM_018556	NP_061026	Q9P1W8	SIRPG_HUMAN	signal-regulatory protein gamma isoform 1	5					blood coagulation|cell adhesion|cell junction assembly|cell-cell signaling|intracellular signal transduction|leukocyte migration|negative regulation of cell proliferation|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to membrane|intracellular|plasma membrane	protein binding			ovary(1)	1						GGGGCCAGGAGGCTGGGACAG	0.552													39	52					0	0	0.007835	0	0
TGM6	343641	broad.mit.edu	37	20	2377257	2377257	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:2377257G>A	uc002wfy.1	+	4	591	c.530G>A	c.(529-531)TGG>TAG	p.W177*	TGM6_uc010gal.1_Nonsense_Mutation_p.W177*	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	177					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GCCCAGGGCTGGAACTACGGG	0.617													14	27					0	0	0.003163	0	0
PROKR2	128674	broad.mit.edu	37	20	5294827	5294827	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:5294827G>A	uc010zqw.1	-	1	189	c.189C>T	c.(187-189)ATC>ATT	p.I63I	PROKR2_uc010zqx.1_Silent_p.I63I|PROKR2_uc010zqy.1_Silent_p.I63I|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	63	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGACCAGCATGATGCCTGCCA	0.527										HNSCC(71;0.22)			57	95					0	0	0.003610	0	0
PLCB1	23236	broad.mit.edu	37	20	8678349	8678349	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:8678349G>A	uc002wnb.2	+	11	1089	c.1086G>A	c.(1084-1086)CTG>CTA	p.L362L	PLCB1_uc010zrb.1_Silent_p.L261L|PLCB1_uc002wna.2_Silent_p.L362L|PLCB1_uc002wnc.1_Silent_p.L261L	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	362	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GTGTGGAGCTGGACTGCTGGA	0.473													62	79					0	0	0.003610	0	0
PLCB4	5332	broad.mit.edu	37	20	9317845	9317845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:9317845G>A	uc002wnf.2	+	4	293	c.157G>A	c.(157-159)GAA>AAA	p.E53K	PLCB4_uc010gbw.1_Missense_Mutation_p.E53K|PLCB4_uc010gbx.2_Missense_Mutation_p.E53K|PLCB4_uc002wne.2_Missense_Mutation_p.E53K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	53					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATGGAGAAGTGAAGGCAAGGT	0.418													21	24					0	0	0.001882	0	0
PLCB4	5332	broad.mit.edu	37	20	9416266	9416266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:9416266G>A	uc002wnf.2	+	27	2684	c.2548G>A	c.(2548-2550)GAC>AAC	p.D850N	PLCB4_uc010gbw.1_Missense_Mutation_p.D850N|PLCB4_uc010gbx.2_Missense_Mutation_p.D862N|PLCB4_uc002wne.2_Missense_Mutation_p.D850N|PLCB4_uc002wnh.2_Missense_Mutation_p.D697N	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	850					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAAGAGAGCAGACCAAATGAG	0.368													41	74					0	0	0.001951	0	0
PAK7	57144	broad.mit.edu	37	20	9546751	9546751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:9546751G>A	uc002wnl.2	-	6	1816	c.1271C>T	c.(1270-1272)CCC>CTC	p.P424L	PAK7_uc002wnk.2_Missense_Mutation_p.P424L|PAK7_uc002wnj.2_Missense_Mutation_p.P424L|PAK7_uc010gby.1_Missense_Mutation_p.P424L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	424	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CACCCTGGAGGGCTGCTGGTC	0.617													38	46					0	0	0.004289	0	0
ANKRD5	63926	broad.mit.edu	37	20	10025188	10025188	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:10025188C>T	uc002wno.2	+	5	1086	c.693C>T	c.(691-693)TTC>TTT	p.F231F	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Silent_p.F231F|ANKRD5_uc010gbz.2_Silent_p.F42F	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	231	ANK 3.						calcium ion binding			ovary(1)|breast(1)	2						GAGGCTTTTTCGATGTAATAA	0.358													47	69					0	0	0.003610	0	0
BFSP1	631	broad.mit.edu	37	20	17479505	17479505	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:17479505G>A	uc002wpo.2	-	6	955	c.916C>T	c.(916-918)CTG>TTG	p.L306L	BFSP1_uc002wpp.2_Silent_p.L181L|BFSP1_uc010zrn.1_Silent_p.L167L|BFSP1_uc010zro.1_Silent_p.L167L	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	306	Rod.|Coil 2.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						TACCGGTCCAGCTCATTCTTC	0.493													22	33					0	0	0.002299	0	0
CRNKL1	51340	broad.mit.edu	37	20	20033166	20033166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:20033166C>T	uc002wrs.2	-	2	336	c.304G>A	c.(304-306)GGA>AGA	p.G102R	C20orf26_uc010gcw.1_5'Flank|C20orf26_uc010zse.1_5'Flank|C20orf26_uc002wru.2_5'Flank|CRNKL1_uc002wrt.1_Missense_Mutation_p.G90R	NM_016652	NP_057736	Q9BZJ0	CRNL1_HUMAN	crooked neck-like 1 protein	102					spliceosome assembly	catalytic step 2 spliceosome|cytoplasm|nuclear speck	RNA binding			ovary(2)|large_intestine(1)	3						GCACCGTTTCCATGGTGACCA	0.617													46	36					0	0	0.003610	0	0
FOXA2	3170	broad.mit.edu	37	20	22563463	22563463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:22563463C>T	uc002wsn.2	-	3	589	c.399G>A	c.(397-399)ATG>ATA	p.M133I	FOXA2_uc002wsm.2_Missense_Mutation_p.M139I	NM_153675	NP_710141	Q9Y261	FOXA2_HUMAN	forkhead box A2 isoform 2	133					cell differentiation in hindbrain|central nervous system myelin formation|chromatin modification|dorsal/ventral neural tube patterning|ectoderm formation|endocrine pancreas development|endoderm development|epithelial tube branching involved in lung morphogenesis|in utero embryonic development|lung epithelial cell differentiation|negative regulation of neuron differentiation|neuron fate specification|oligodendrocyte cell fate commitment|positive regulation of embryonic development|positive regulation of gastrulation|positive regulation of neuron differentiation|primitive streak formation|regulation of blood coagulation|regulation of sequence-specific DNA binding transcription factor activity|response to interleukin-6	cytoplasm|transcription factor complex	DNA bending activity|double-stranded DNA binding|protein domain specific binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|kidney(1)|central_nervous_system(1)	4	Lung NSC(19;0.188)					ACATGGGGCTCATGGAGTTCA	0.716													38	53					0	0	0.007835	0	0
CST8	10047	broad.mit.edu	37	20	23473643	23473643	+	Missense_Mutation	SNP	G	A	A	rs147883534	by1000genomes	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:23473643G>A	uc002wth.1	+	3	637	c.280G>A	c.(280-282)GAT>AAT	p.D94N		NM_005492	NP_005483	O60676	CST8_HUMAN	cystatin 8 precursor	94						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					TGCCCGCAGCGATTGCAGAAA	0.393													103	133					0	0	0.003610	0	0
TMEM90B	79953	broad.mit.edu	37	20	24646002	24646002	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:24646002G>A	uc002wtw.1	+	4	1272	c.639G>A	c.(637-639)AAG>AAA	p.K213K		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	213	Extracellular (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						CCGTGGCCAAGGGGGACTTGC	0.592													115	137					0	0	0.003610	0	0
XKR7	343702	broad.mit.edu	37	20	30584557	30584557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:30584557G>A	uc002wxe.2	+	3	1211	c.1037G>A	c.(1036-1038)GGG>GAG	p.G346E		NM_001011718	NP_001011718	Q5GH72	XKR7_HUMAN	XK, Kell blood group complex subunit-related	346						integral to membrane				ovary(1)|breast(1)|skin(1)	3			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GTCATCCAAGGGGAGACGGAC	0.567													41	36					0	0	0.006999	0	0
C20orf160	140706	broad.mit.edu	37	20	30616856	30616856	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:30616856C>T	uc002wxf.2	+	7	1141	c.1128C>T	c.(1126-1128)TCC>TCT	p.S376S	C20orf160_uc002wxg.2_5'UTR	NM_080625	NP_542192	Q9NUG4	CT160_HUMAN	hypothetical protein LOC140706	Error:Variant_position_missing_in_Q9NUG4_after_alignment										central_nervous_system(3)|ovary(1)	4						ACCTTCTTTCCATGGCTCCCA	0.552													117	166					0	0	0.003610	0	0
BPIL1	80341	broad.mit.edu	37	20	31609150	31609150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:31609150G>A	uc002wyj.2	+	14	1452	c.1258G>A	c.(1258-1260)GCT>ACT	p.A420T		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	420						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						CCATCTCAATGGTAAGCCCTG	0.647													13	24					0	0	0.001368	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32232206	32232206	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:32232206C>T	uc002wzg.1	+	12	2106	c.1569C>T	c.(1567-1569)ATC>ATT	p.I523I	CBFA2T2_uc010zug.1_Silent_p.I297I|CBFA2T2_uc002wze.1_Silent_p.I514I|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Silent_p.I494I|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA|CBFA2T2_uc002wzk.1_Silent_p.I71I	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	523	MYND-type.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						GCTGCAATATCGCGCGATACT	0.612													61	85					0	0	0.003610	0	0
GGT7	2686	broad.mit.edu	37	20	33451191	33451191	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:33451191G>A	uc002xay.2	-	2	373	c.330C>T	c.(328-330)ATC>ATT	p.I110I	GGT7_uc002xaz.1_Silent_p.I127I|GGT7_uc002xba.1_Silent_p.I110I	NM_178026	NP_821158	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	110	Helical; Signal-anchor for type II membrane protein; (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(1)	1						AGGCCGTGACGATGACCGTGA	0.677													22	32					0	0	0.003954	0	0
EPB41L1	2036	broad.mit.edu	37	20	34800287	34800287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:34800287G>A	uc002xfb.2	+	16	2344	c.2173G>A	c.(2173-2175)GAT>AAT	p.D725N	EPB41L1_uc002xeu.2_Missense_Mutation_p.D651N|EPB41L1_uc010zvo.1_Missense_Mutation_p.D725N|EPB41L1_uc002xev.2_Missense_Mutation_p.D725N|EPB41L1_uc002xew.2_Missense_Mutation_p.D616N|EPB41L1_uc002xex.2_Missense_Mutation_p.D545N|EPB41L1_uc002xey.2_Missense_Mutation_p.D503N|EPB41L1_uc002xez.2_Missense_Mutation_p.D651N|EPB41L1_uc010gfq.2_Missense_Mutation_p.D824N	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	725					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					CTCCGCTATGGATAACACCCA	0.537													33	60					0	0	0.002445	0	0
GHRH	2691	broad.mit.edu	37	20	35882719	35882719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:35882719C>T	uc002xgr.2	-	3	202	c.202G>A	c.(202-204)GAG>AAG	p.E68K	GHRH_uc002xgs.2_Missense_Mutation_p.E68K|GHRH_uc002xgt.2_Missense_Mutation_p.E68K	NM_021081	NP_066567	P01286	SLIB_HUMAN	growth hormone releasing hormone preproprotein	68					activation of adenylate cyclase activity by G-protein signaling pathway|adenohypophysis development|growth hormone secretion|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of circadian sleep/wake cycle, REM sleep|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to food	extracellular space|terminal button	growth hormone-releasing hormone activity|growth hormone-releasing hormone receptor binding			ovary(1)	1		Myeloproliferative disorder(115;0.00878)				GCTCCTCGCTCTTGGTTGCTC	0.493													86	150					0	0	0.003610	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36407715	36407715	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:36407715C>T	uc010zvw.1	+	11	1100	c.1009C>T	c.(1009-1011)CAG>TAG	p.Q337*	CTNNBL1_uc002xhh.2_Nonsense_Mutation_p.Q150*|CTNNBL1_uc002xhi.2_RNA|CTNNBL1_uc002xhj.2_Nonsense_Mutation_p.Q85*	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	337					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				CGAGGGTCTTCAGCTGATGAA	0.483													43	55					0	0	0.003610	0	0
KIAA0406	9675	broad.mit.edu	37	20	36640472	36640472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:36640472C>T	uc002xhl.2	-	3	1956	c.1747G>A	c.(1747-1749)GAG>AAG	p.E583K	KIAA0406_uc002xhm.2_Missense_Mutation_p.E583K	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	583							binding				0		Myeloproliferative disorder(115;0.00874)				ATCAGCTCCTCTCCCATTTCC	0.458													98	134					0	0	0.003610	0	0
SLC32A1	140679	broad.mit.edu	37	20	37353724	37353724	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:37353724G>A	uc002xjc.2	+	1	620	c.357G>A	c.(355-357)TGG>TGA	p.W119*		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	119	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	TCACGGCGTGGGAGGCAGGCT	0.682													72	86					0	0	0.003610	0	0
ZHX3	23051	broad.mit.edu	37	20	39831445	39831445	+	Silent	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:39831445A>C	uc002xjs.1	-	3	2490	c.2112T>G	c.(2110-2112)GGT>GGG	p.G704G	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Silent_p.G704G|ZHX3_uc002xjt.1_Silent_p.G704G|ZHX3_uc002xju.1_Silent_p.G704G|ZHX3_uc002xjv.1_Silent_p.G704G|ZHX3_uc002xjw.1_Silent_p.G704G|ZHX3_uc010ggg.1_Silent_p.G704G	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	704					negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				AGCCATTTTCACCAGAGACCC	0.527													24	122					0	0	0.003954	0	0
CHD6	84181	broad.mit.edu	37	20	40033600	40033600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:40033600G>A	uc002xka.1	-	37	7959	c.7781C>T	c.(7780-7782)TCT>TTT	p.S2594F	CHD6_uc002xjz.1_Missense_Mutation_p.S131F	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2594					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AGACTGATCAGAAAATGGACC	0.473													88	107					0	0	0.003610	0	0
PTPRT	11122	broad.mit.edu	37	20	41076908	41076908	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:41076908G>A	uc002xkg.2	-	9	1696	c.1512C>T	c.(1510-1512)ATC>ATT	p.I504I	PTPRT_uc010ggj.2_Silent_p.I504I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	504	Extracellular (Potential).|Fibronectin type-III 3.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GTTTCCACTGGATGTAGATCT	0.483													64	97					0	0	0.003610	0	0
SERINC3	10955	broad.mit.edu	37	20	43142677	43142677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:43142677G>A	uc002xme.2	-	2	178	c.44C>T	c.(43-45)CCA>CTA	p.P15L	SERINC3_uc002xmf.1_Missense_Mutation_p.P15L|SERINC3_uc010ggs.1_Missense_Mutation_p.P8L|SERINC3_uc010zwp.1_5'UTR	NM_198941	NP_945179	Q13530	SERC3_HUMAN	tumor differentially expressed protein 1	15	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			skin(3)	3		Myeloproliferative disorder(115;0.0122)	Colorectal(3;0.000291)|COAD - Colon adenocarcinoma(18;0.00189)			GCAGAGGCATGGAACCTGGAA	0.493													32	35					0	0	0.001786	0	0
SEMG2	6407	broad.mit.edu	37	20	43850423	43850423	+	Silent	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:43850423A>T	uc010ggz.2	+	2	207	c.150A>T	c.(148-150)GGA>GGT	p.G50G	SEMG2_uc002xnk.2_Silent_p.G50G|SEMG2_uc002xnl.2_Silent_p.G50G	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	50					sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				ACTATTTTGGACAAAAAGACC	0.398													39	48					0	0	0.006999	0	0
SLPI	6590	broad.mit.edu	37	20	43882237	43882237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:43882237G>A	uc002xnm.1	-	2	245	c.223C>T	c.(223-225)CCT>TCT	p.P75S		NM_003064	NP_003055	P03973	SLPI_HUMAN	secretory leukocyte peptidase inhibitor	75	Trypsin inhibitory domain.|WAP 1.					extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GTGTCAACAGGATCCAGGCAT	0.537													18	32					0	0	0.001882	0	0
ZMYND8	23613	broad.mit.edu	37	20	45875210	45875210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:45875210G>A	uc002xta.1	-	14	2020	c.1766C>T	c.(1765-1767)TCG>TTG	p.S589L	ZMYND8_uc010ghq.1_Missense_Mutation_p.S266L|ZMYND8_uc010ghr.1_Missense_Mutation_p.S564L|ZMYND8_uc002xst.1_Missense_Mutation_p.S517L|ZMYND8_uc002xsu.1_Missense_Mutation_p.S589L|ZMYND8_uc002xsv.1_Missense_Mutation_p.S517L|ZMYND8_uc002xsw.1_Missense_Mutation_p.S341L|ZMYND8_uc002xsx.1_Missense_Mutation_p.S341L|ZMYND8_uc002xsy.1_Missense_Mutation_p.S564L|ZMYND8_uc002xsz.1_Missense_Mutation_p.S526L|ZMYND8_uc010zxy.1_Missense_Mutation_p.S616L|ZMYND8_uc002xtb.1_Missense_Mutation_p.S609L|ZMYND8_uc002xss.2_Missense_Mutation_p.S589L|ZMYND8_uc010zxz.1_Missense_Mutation_p.S584L|ZMYND8_uc002xtc.1_Missense_Mutation_p.S609L|ZMYND8_uc002xtd.1_Missense_Mutation_p.S584L|ZMYND8_uc002xte.1_Missense_Mutation_p.S589L|ZMYND8_uc010zya.1_Missense_Mutation_p.S589L|ZMYND8_uc002xtf.1_Missense_Mutation_p.S609L|ZMYND8_uc002xtg.2_Missense_Mutation_p.S583L|ZMYND8_uc010ghs.1_Missense_Mutation_p.S583L	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	589							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			AGAATCCTCCGAATCGCTGTG	0.423													71	88					0	0	0.003610	0	0
NCOA3	8202	broad.mit.edu	37	20	46256463	46256463	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:46256463C>T	uc002xtk.2	+	7	896	c.691C>T	c.(691-693)CAG>TAG	p.Q231*	NCOA3_uc010ght.1_Nonsense_Mutation_p.Q231*|NCOA3_uc002xtl.2_Nonsense_Mutation_p.Q231*|NCOA3_uc002xtm.2_Nonsense_Mutation_p.Q231*|NCOA3_uc002xtn.2_Nonsense_Mutation_p.Q231*|NCOA3_uc010zyc.1_Nonsense_Mutation_p.Q33*	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	231					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TGCCCTGTCTCAGCCACGAGC	0.423													23	60					0	0	0.003330	0	0
ATP9A	10079	broad.mit.edu	37	20	50245611	50245611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:50245611C>T	uc002xwg.1	-	16	1669	c.1669G>A	c.(1669-1671)GAT>AAT	p.D557N	ATP9A_uc010gih.1_Missense_Mutation_p.D421N|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	557	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GTTGATTCATCCTAGAGAGGG	0.478													33	86					0	0	0.002445	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872073	51872073	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:51872073C>T	uc002xwo.2	+	2	3032	c.2076C>T	c.(2074-2076)ATC>ATT	p.I692I		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	692					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TGCCATGCATCAACCCACTCA	0.627													26	24					0	0	0.003954	0	0
BCAS1	8537	broad.mit.edu	37	20	52645107	52645107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:52645107C>T	uc002xws.2	-	4	885	c.547G>A	c.(547-549)GAA>AAA	p.E183K	BCAS1_uc010zzb.1_Missense_Mutation_p.E86K|BCAS1_uc010gim.2_Missense_Mutation_p.E86K|BCAS1_uc002xwt.2_Missense_Mutation_p.E183K|BCAS1_uc010gil.1_Missense_Mutation_p.E183K|BCAS1_uc010zzc.1_Missense_Mutation_p.E86K	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	183						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			GAGGGAGCTTCTCCTCCTGCT	0.582													68	83					0	0	0.003610	0	0
CSTF1	1477	broad.mit.edu	37	20	54972861	54972861	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:54972861C>T	uc002xxl.1	+	4	809	c.609C>T	c.(607-609)TCC>TCT	p.S203S	CSTF1_uc002xxm.1_Silent_p.S203S|CSTF1_uc002xxn.1_Silent_p.S203S|CSTF1_uc002xxo.1_Silent_p.S146S	NM_001033521	NP_001028693	Q05048	CSTF1_HUMAN	cleavage stimulation factor subunit 1	203	WD 2.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding			central_nervous_system(1)	1			Colorectal(105;0.202)			TTGATTATTCCAAACCATCAG	0.363													14	51					0	0	0.001855	0	0
TFAP2C	7022	broad.mit.edu	37	20	55211688	55211688	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:55211688G>A	uc002xya.2	+	6	1188	c.945G>A	c.(943-945)AGG>AGA	p.R315R	TFAP2C_uc010zzi.1_Silent_p.R146R	NM_003222	NP_003213	Q92754	AP2C_HUMAN	transcription factor AP-2 gamma	315	H-S-H (helix-span-helix), dimerization.				cell-cell signaling|male gonad development|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Colorectal(105;0.229)			ATTTGGCTAGGGACTTTGCCT	0.418													46	56					0	0	0.003610	0	0
CTCFL	140690	broad.mit.edu	37	20	56078532	56078532	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:56078532C>T	uc010gix.1	-	9	2462	c.1800G>A	c.(1798-1800)AAG>AAA	p.K600K	CTCFL_uc010giw.1_Silent_p.K600K|CTCFL_uc002xym.2_Silent_p.K600K|CTCFL_uc010giz.1_Silent_p.K188K|CTCFL_uc010giy.1_Silent_p.K270K|CTCFL_uc010gja.1_Silent_p.K550K|CTCFL_uc010gjb.1_Silent_p.K600K|CTCFL_uc010gjc.1_Silent_p.K600K|CTCFL_uc010gjd.1_Silent_p.K600K|CTCFL_uc010gje.2_Silent_p.K600K|CTCFL_uc010gjf.2_Silent_p.K395K|CTCFL_uc010gjg.2_Silent_p.K332K|CTCFL_uc010giu.2_RNA|CTCFL_uc010giv.2_RNA	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	600					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			TCGCAGCTTCCTTCTGACCCT	0.498													83	113					0	0	0.003610	0	0
APCDD1L	164284	broad.mit.edu	37	20	57036049	57036049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:57036049C>T	uc002xze.1	-	4	1489	c.1303G>A	c.(1303-1305)GGC>AGC	p.G435S	APCDD1L_uc010zzp.1_Missense_Mutation_p.G446S	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	435						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			GGACTTGAGCCATCGGTGGGC	0.617													106	110					0	0	0.003610	0	0
SYCP2	10388	broad.mit.edu	37	20	58467646	58467646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:58467646G>A	uc002yaz.2	-	22	2043	c.1904C>T	c.(1903-1905)TCG>TTG	p.S635L		NM_014258	NP_055073	Q9BX26	SYCP2_HUMAN	synaptonemal complex protein 2	635					cell division|meiotic prophase I|synaptonemal complex assembly		DNA binding			ovary(3)|lung(2)	5	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;1.19e-09)			GTCTCCTGACGAAGTACTTGC	0.318													17	18					0	0	0.006122	0	0
C20orf177	63939	broad.mit.edu	37	20	58519433	58519433	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:58519433C>T	uc002yba.2	+	5	850	c.435C>T	c.(433-435)TTC>TTT	p.F145F	C20orf177_uc010zzx.1_Intron|C20orf177_uc002ybc.2_Silent_p.F145F	NM_022106	NP_071389	Q9NTX9	CT177_HUMAN	hypothetical protein LOC63939	145										ovary(2)|breast(1)	3	all_lung(29;0.00693)		BRCA - Breast invasive adenocarcinoma(7;1.22e-08)			ATCCTAATTTCCTTCCATCCC	0.483													43	59					0	0	0.003610	0	0
CDH4	1002	broad.mit.edu	37	20	60509225	60509225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:60509225C>T	uc002ybn.1	+	15	2505	c.2491C>T	c.(2491-2493)CCG>TCG	p.P831S	CDH4_uc002ybp.1_Missense_Mutation_p.P757S	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	831	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GCCCCAGTACCCGATCAGGCC	0.677													36	54					0	0	0.004289	0	0
LAMA5	3911	broad.mit.edu	37	20	60901736	60901736	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:60901736C>T	uc002ycq.2	-	40	5362	c.5295G>A	c.(5293-5295)GTG>GTA	p.V1765V		NM_005560	NP_005551	O15230	LAMA5_HUMAN	laminin alpha 5 precursor	1765	Laminin IV type A.				angiogenesis|cell proliferation|cell recognition|cytoskeleton organization|endothelial cell differentiation|focal adhesion assembly|integrin-mediated signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	integrin binding			ovary(1)|pancreas(1)|skin(1)	3	Breast(26;1.57e-08)		BRCA - Breast invasive adenocarcinoma(19;4.36e-06)		Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CCCTCACCTCCACCAGCTGCA	0.647													28	40					0	0	0.002445	0	0
C20orf200	253868	broad.mit.edu	37	20	61143708	61143708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:61143708C>T	uc002ycz.1	-	3	631	c.140G>A	c.(139-141)GGG>GAG	p.G47E	C20orf200_uc002ycy.2_RNA	NM_152757	NP_689970			hypothetical protein LOC253868												0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;7.17e-06)			TGGTGTGGCCCCGTGGGAAGC	0.652													60	77					0	0	0.003610	0	0
NTSR1	4923	broad.mit.edu	37	20	61340784	61340785	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:61340784_61340785GG>AA	uc002ydf.2	+	1	596_597	c.225_226GG>AA	c.(223-228)GTGGTG>GTAATG	p.V76M		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	76	Helical; Name=1; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			CGCTCTTCGTGGTGGGCACGGT	0.668													24	41					0	0	0.004672	0	0
COL20A1	57642	broad.mit.edu	37	20	61941759	61941759	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:61941759C>T	uc011aau.1	+	11	1390	c.1290C>T	c.(1288-1290)TCC>TCT	p.S430S	COL20A1_uc011aav.1_Silent_p.S251S	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	430	Fibronectin type-III 2.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CCGCCGCCTCCACGGAGCTGC	0.682													17	15					0	0	0.001216	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981533	61981533	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:61981533G>A	uc002yes.2	-	5	1408	c.1230C>T	c.(1228-1230)GTC>GTT	p.V410V	CHRNA4_uc002yet.1_Silent_p.V234V|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.V339V|CHRNA4_uc002yev.1_Silent_p.V234V|CHRNA4_uc010gkf.1_Silent_p.V234V	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	410	Cytoplasmic (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	CATCCAGGGGGACACAGAAGG	0.697													6	8					0	0	0.001984	0	0
CHRNA4	1137	broad.mit.edu	37	20	61982226	61982226	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr20:61982226G>A	uc002yes.2	-	5	715	c.537C>T	c.(535-537)TTC>TTT	p.F179F	CHRNA4_uc002yet.1_Silent_p.F3F|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.F108F|CHRNA4_uc002yev.1_Silent_p.F3F|CHRNA4_uc010gkf.1_Silent_p.F3F	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	179	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	TCCAGGAGCCGAATTTCATGG	0.602													28	119					0	0	0.001512	0	0
TPTE	7179	broad.mit.edu	37	21	10910393	10910393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr21:10910393C>T	uc002yip.1	-	22	1731	c.1363G>A	c.(1363-1365)GAT>AAT	p.D455N	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.D437N|TPTE_uc002yir.1_Missense_Mutation_p.D417N|TPTE_uc010gkv.1_Missense_Mutation_p.D317N	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	455	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTAATGTTATCAAGTACCTAT	0.318													9	30					0	0	0.006214	0	0
BACH1	571	broad.mit.edu	37	21	30693736	30693736	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr21:30693736C>T	uc002ynj.2	+	2	250	c.135C>T	c.(133-135)TTC>TTT	p.F45F	BACH1_uc002ynk.2_Silent_p.F45F|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	45	BTB.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						GACAGCGGTTCCGCGCTCACC	0.522													11	42					0	0	0.000978	0	0
KRTAP19-5	337972	broad.mit.edu	37	21	31874267	31874267	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr21:31874267A>G	uc011ada.1	-	1	142	c.142T>C	c.(142-144)TCT>CCT	p.S48P		NM_181611	NP_853642	Q3LI72	KR195_HUMAN	keratin associated protein 19-5	48						intermediate filament	protein binding				0						CCGAAGCCAGAGCCGTATCCG	0.547													46	56					0	0	0.003610	0	0
HUNK	30811	broad.mit.edu	37	21	33340639	33340639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr21:33340639C>T	uc002yph.2	+	6	1312	c.952C>T	c.(952-954)CGC>TGC	p.R318C		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	318	Protein kinase.				multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						ACTGGCGAATCGCTGGCTTAA	0.527													24	41					0	0	0.002780	0	0
SON	6651	broad.mit.edu	37	21	34922795	34922795	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr21:34922795C>T	uc002yse.1	+	3	1307	c.1258C>T	c.(1258-1260)CTT>TTT	p.L420F	SON_uc002ysb.1_Missense_Mutation_p.L420F|SON_uc002ysc.2_Missense_Mutation_p.L420F|SON_uc002ysd.2_5'UTR|SON_uc002ysf.1_Intron|SON_uc002ysg.2_5'Flank	NM_138927	NP_620305	P18583	SON_HUMAN	SON DNA-binding protein isoform F	420					anti-apoptosis|cytokinesis|mRNA processing|regulation of cell cycle|regulation of RNA splicing|RNA splicing|spindle pole body separation	nuclear speck	DNA binding|double-stranded RNA binding			ovary(4)|skin(2)	6						GCCAGGGCCCCTTTCTACCCC	0.647													17	41					0	0	0.001523	0	0
DONSON	29980	broad.mit.edu	37	21	34958483	34958483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr21:34958483G>A	uc002ysk.2	-	3	474	c.407C>T	c.(406-408)TCA>TTA	p.S136L	DONSON_uc002ysn.1_Missense_Mutation_p.S19L|DONSON_uc002ysi.1_5'UTR|DONSON_uc002ysj.2_5'UTR|DONSON_uc002ysl.2_Intron|DONSON_uc010gme.2_Missense_Mutation_p.S109L|DONSON_uc002ysm.2_Missense_Mutation_p.S136L	NM_017613	NP_060083	Q9NYP3	DONS_HUMAN	downstream neighbor of SON	136					multicellular organismal development	nucleus				ovary(1)|central_nervous_system(1)	2						TGATACATGTGAAGTCTTTAG	0.358											OREG0003565	type=REGULATORY REGION|Gene=DONSON|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	15					0	0	0.003080	0	0
CCT8L2	150160	broad.mit.edu	37	22	17071934	17071934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:17071934C>T	uc002zlp.1	-	1	1767	c.1507G>A	c.(1507-1509)GGA>AGA	p.G503R		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	503					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				GCTCGAAATCCTTGGGCTTTG	0.512													112	63					0	0	0.003610	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072290	17072290	+	Missense_Mutation	SNP	C	T	T	rs141686687		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:17072290C>T	uc002zlp.1	-	1	1411	c.1151G>A	c.(1150-1152)GGG>GAG	p.G384E		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	384					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				ACTCCGCAGCCCCTGGGTGGT	0.567													59	39					0	0	0.003610	0	0
GAB4	128954	broad.mit.edu	37	22	17472821	17472821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:17472821C>T	uc002zlw.2	-	2	528	c.420G>A	c.(418-420)ATG>ATA	p.M140I	GAB4_uc010gqs.1_Missense_Mutation_p.M140I	NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	140	PH.									large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				CCCACTCATTCATGTCCTCCC	0.517													153	58					0	0	0.003610	0	0
CECR1	51816	broad.mit.edu	37	22	17688079	17688080	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:17688079_17688080CC>TT	uc002zmk.1	-	2	635_636	c.423_424GG>AA	c.(421-426)AGGGGG>AGAAGG	p.G142R	CECR1_uc010gqu.1_Missense_Mutation_p.G142R|CECR1_uc011agi.1_Missense_Mutation_p.G100R|CECR1_uc011agj.1_Missense_Mutation_p.G100R	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	142	PRB domain.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				TGCATGATCCCCCTTGGGGTGA	0.535													69	24					0	0	0.004672	0	0
CECR2	27443	broad.mit.edu	37	22	18022175	18022175	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:18022175G>A	uc010gqw.1	+	15	2403	c.2277G>A	c.(2275-2277)ACG>ACA	p.T759T	CECR2_uc010gqv.1_Silent_p.T618T|CECR2_uc002zml.2_Silent_p.T618T	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	801					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		ATGGTGCTACGAACCAAGGAC	0.552													8	28					0	0	0.003080	0	0
CECR2	27443	broad.mit.edu	37	22	18028180	18028180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:18028180G>A	uc010gqw.1	+	16	3263	c.3137G>A	c.(3136-3138)GGG>GAG	p.G1046E	CECR2_uc010gqv.1_Missense_Mutation_p.G904E|CECR2_uc002zml.2_Missense_Mutation_p.G905E|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1088					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		GGATCGGAGGGGAAGGGCCTT	0.617													23	11					0	0	0.002780	0	0
Unknown	0	broad.mit.edu	37	22	18844766	18844766	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:18844766G>A	uc002zoe.2	+	4		c.2020G>A			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CAGCCTCTGAGGGCAGCAGTG	0.557													6	13					0	0	0.003080	0	0
DGCR2	9993	broad.mit.edu	37	22	19036104	19036104	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:19036104G>A	uc002zoq.1	-	7	1103	c.855C>T	c.(853-855)TTC>TTT	p.F285F	DGCR2_uc002zor.1_Silent_p.F61F|DGCR2_uc011agr.1_Silent_p.F241F|DGCR11_uc002zos.2_5'Flank	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	285	Extracellular (Potential).|VWFC.				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					CCTTAGGGGTGAAGTAGAACC	0.532													228	135					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	22	20296933	20296933	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:20296933C>T	uc002zrw.1	+	3		c.3085C>T								Homo sapiens mRNA for KIAA1653 protein, partial cds.																		CCACCCTGCACCGAAACCCCA	0.632													5	35					0	0	0.000602	0	0
LOC96610	96610	broad.mit.edu	37	22	22758882	22758882	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:22758882G>A	uc011aim.1	+	53		c.5948G>A								Parts of antibodies, mostly variable regions.												0						CAGCTCCCAGGAACAGCCCCC	0.567													21	46					0	0	0.003954	0	0
LOC96610	96610	broad.mit.edu	37	22	22786936	22786937	+	RNA	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:22786936_22786937GG>AA	uc011aim.1	+	71		c.7003_7004GG>AA								Parts of antibodies, mostly variable regions.												0						ATGGGTCCAGGGATATCCAGGG	0.624													10	6					0	0	0.004672	0	0
PIWIL3	440822	broad.mit.edu	37	22	25145660	25145660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:25145660C>T	uc003abd.1	-	10	1633	c.1216G>A	c.(1216-1218)GGT>AGT	p.G406S	PIWIL3_uc011ajx.1_Missense_Mutation_p.G297S|PIWIL3_uc011ajy.1_Missense_Mutation_p.G297S|PIWIL3_uc010gut.1_Missense_Mutation_p.G406S	NM_001008496	NP_001008496	Q7Z3Z3	PIWL3_HUMAN	piwi-like 3	406	PAZ.				cell differentiation|gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatogenesis	cytoplasm	RNA binding			ovary(3)|central_nervous_system(1)	4						CCATCAGTACCTGTCATGTGG	0.488													7	27					0	0	0.004482	0	0
CRYBB1	1414	broad.mit.edu	37	22	27003979	27003979	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:27003979G>A	uc003acy.1	-	4	376	c.306C>T	c.(304-306)GTC>GTT	p.V102V		NM_001887	NP_001878	P53674	CRBB1_HUMAN	crystallin, beta B1	102	Beta/gamma crystallin 'Greek key' 2.				visual perception		structural constituent of eye lens			ovary(1)	1						GCTCAAAGGCGACCCAGCTGG	0.537													12	52					0	0	0.002450	0	0
GAS2L1	10634	broad.mit.edu	37	22	29704232	29704232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:29704232C>T	uc003afa.1	+	2	336	c.137C>T	c.(136-138)CCG>CTG	p.P46L	GAS2L1_uc010gvm.1_Missense_Mutation_p.P46L|GAS2L1_uc003afb.1_Missense_Mutation_p.P46L|GAS2L1_uc003afc.1_Missense_Mutation_p.P46L|GAS2L1_uc003afd.1_Missense_Mutation_p.P46L|GAS2L1_uc003afe.1_Missense_Mutation_p.P46L	NM_152236	NP_689422	Q99501	GA2L1_HUMAN	growth arrest-specific 2 like 1 isoform a	46	CH.				cell cycle arrest	cytoplasm|cytoskeleton					0						CTGGGTCTCCCGGGTGGTGGC	0.672													5	10					0	0	0.001168	0	0
NEFH	4744	broad.mit.edu	37	22	29885807	29885807	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:29885807G>A	uc003afo.2	+	4	2249	c.2178G>A	c.(2176-2178)GTG>GTA	p.V726V	NEFH_uc003afp.2_5'UTR	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	732	30 X 6 AA repeats of K-S-P-[AEPV]-[EAK]- [AEVK].|24.|Tail.				cell death|nervous system development	neurofilament					0						AGTCCCCAGTGAAGGAAGAAG	0.557													76	56					0	0	0.003610	0	0
LIF	3976	broad.mit.edu	37	22	30639706	30639706	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:30639706C>T	uc003agz.2	-	3	655	c.543G>A	c.(541-543)AAG>AAA	p.K181K	LIF_uc011aks.1_3'UTR|uc003aha.2_5'Flank	NM_002309	NP_002300	P15018	LIF_HUMAN	leukemia inhibitory factor (cholinergic	181					immune response|leukemia inhibitory factor signaling pathway|negative regulation of hormone secretion|positive regulation of cell proliferation|positive regulation of macrophage differentiation|positive regulation of MAPKKK cascade|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of peptidyl-serine phosphorylation of STAT protein|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of metanephric nephron tubule epithelial cell differentiation		cytokine activity|growth factor activity|leukemia inhibitory factor receptor binding				0			Epithelial(10;0.171)			AGCCCAGCTTCTTCTTCTGGA	0.572													28	96					0	0	0.006320	0	0
SEC14L4	284904	broad.mit.edu	37	22	30891309	30891309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:30891309C>T	uc003aid.2	-	5	455	c.355G>A	c.(355-357)GAT>AAT	p.D119N	SEC14L4_uc011akz.1_Missense_Mutation_p.D119N|SEC14L4_uc003aie.2_Missense_Mutation_p.D104N|SEC14L4_uc003aif.2_Missense_Mutation_p.D65N	NM_174977	NP_777637	Q9UDX3	S14L4_HUMAN	SEC14p-like protein TAP3 isoform a	119	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			skin(1)	1					Vitamin E(DB00163)	CGGATCATATCCTGCTTGGAG	0.572													14	26					0	0	0.003163	0	0
SMTN	6525	broad.mit.edu	37	22	31486981	31486981	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:31486981C>T	uc003ajl.1	+	10	1190	c.972C>T	c.(970-972)TTC>TTT	p.F324F	SMTN_uc003ajk.1_Silent_p.F324F|SMTN_uc003ajm.1_Silent_p.F324F|SMTN_uc011ale.1_Silent_p.F378F|SMTN_uc011alf.1_Silent_p.F380F|SMTN_uc003ajn.1_Silent_p.F316F|SMTN_uc011alg.1_5'UTR|SMTN_uc003ajo.1_5'Flank|SMTN_uc011alh.1_5'Flank|SMTN_uc010gwe.1_5'Flank	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	324					muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						CTTCCTCATTCCAGCGGGCTG	0.602													61	34					0	0	0.003610	0	0
TIMP3	7078	broad.mit.edu	37	22	33253278	33253278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:33253278C>T	uc003anb.2	+	3	1433	c.247C>T	c.(247-249)CAT>TAT	p.H83Y	SYN3_uc003amx.2_Intron|SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Intron	NM_000362	NP_000353	P35625	TIMP3_HUMAN	tissue inhibitor of metalloproteinase 3	83	NTR.				negative regulation of membrane protein ectodomain proteolysis|visual perception		metal ion binding|metalloendopeptidase inhibitor activity|protein binding			lung(1)	1						GCAGTACATCCATACGGAAGC	0.488													62	41					0	0	0.003610	0	0
MGAT3	4248	broad.mit.edu	37	22	39884193	39884193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:39884193G>A	uc003axv.3	+	2	1080	c.841G>A	c.(841-843)GGC>AGC	p.G281S	MGAT3_uc010gxy.2_Missense_Mutation_p.G281S	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	281	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					CCCGCCCGGCGGCCGGCAGGA	0.667													89	57					0	0	0.003610	0	0
CACNA1I	8911	broad.mit.edu	37	22	40076988	40076988	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:40076988C>T	uc003ayc.2	+	34	5595	c.5595C>T	c.(5593-5595)TCC>TCT	p.S1865S	CACNA1I_uc003ayd.2_Silent_p.S1830S|CACNA1I_uc003aye.2_Silent_p.S1780S|CACNA1I_uc003ayf.2_Silent_p.S1745S	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1865	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GGTCCTCGTCCATCCTGCTGG	0.657													42	22					0	0	0.001951	0	0
TNRC6B	23112	broad.mit.edu	37	22	40719215	40719216	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:40719215_40719216CC>TT	uc011aor.1	+	23	5683_5684	c.5472_5473CC>TT	c.(5470-5475)GACCTT>GATTTT	p.L1825F	TNRC6B_uc003aym.2_Missense_Mutation_p.L1021F|TNRC6B_uc003ayn.3_Missense_Mutation_p.L1715F	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1825					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						TACCTGGTGACCTTCTGGGAGG	0.505													23	45					0	0	0.004672	0	0
MKL1	57591	broad.mit.edu	37	22	40813460	40813460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:40813460G>A	uc003ayv.1	-	10	2309	c.2102C>T	c.(2101-2103)TCT>TTT	p.S701F	MKL1_uc003ayw.1_Missense_Mutation_p.S701F|MKL1_uc010gye.1_Missense_Mutation_p.S701F|MKL1_uc010gyf.1_Missense_Mutation_p.S651F	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	701	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CATCTGGGCAGAGGGGGCAGG	0.652			T	RBM15	acute megakaryocytic leukemia								4	20					0	0	0.000248	0	0
NFAM1	150372	broad.mit.edu	37	22	42783016	42783016	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:42783016G>A	uc003bcn.3	-	5	770	c.732C>T	c.(730-732)GCC>GCT	p.A244A		NM_145912	NP_666017	Q8NET5	NFAM1_HUMAN	NFAT activation molecule 1 precursor	244	Cytoplasmic (Potential).				B cell differentiation|inflammatory response|intracellular signal transduction|positive regulation of B cell receptor signaling pathway|positive regulation of cytokine production|positive regulation of sequence-specific DNA binding transcription factor activity	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity				0						GGCTCTGCTTGGCGGTGGGTG	0.632													20	98					0	0	0.001882	0	0
A4GALT	53947	broad.mit.edu	37	22	43089153	43089153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:43089153C>T	uc003bdb.2	-	3	1066	c.805G>A	c.(805-807)GAG>AAG	p.E269K	A4GALT_uc010gzd.2_Missense_Mutation_p.E269K	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	269	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						GCGCGGCTCTCGGCCAGGCTG	0.647													8	2					0	0	0.000673	0	0
A4GALT	53947	broad.mit.edu	37	22	43089247	43089247	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:43089247G>A	uc003bdb.2	-	3	972	c.711C>T	c.(709-711)TTC>TTT	p.F237F	A4GALT_uc010gzd.2_Silent_p.F237F	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	237	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						AGTGGTCCACGAAGTCCCGCA	0.657													13	15					0	0	0.002450	0	0
MPPED1	758	broad.mit.edu	37	22	43831072	43831072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:43831072C>T	uc011apv.1	+	3	566	c.343C>T	c.(343-345)CAC>TAC	p.H115Y	MPPED1_uc011apw.1_Missense_Mutation_p.H9Y|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.H115Y|MPPED1_uc011apz.1_Missense_Mutation_p.H148Y	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	115							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				CGTGCTGATCCACGCTGGGGA	0.652													70	18					0	0	0.003610	0	0
EFCAB6	64800	broad.mit.edu	37	22	44168909	44168909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:44168909C>T	uc003bdy.1	-	4	429	c.214G>A	c.(214-216)GGG>AGG	p.G72R	EFCAB6_uc003bdz.1_Intron|EFCAB6_uc010gzi.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Missense_Mutation_p.G69R|EFCAB6_uc003beb.3_Intron	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	72	EF-hand 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				AACTCATCCCCTCTGTCGGTA	0.398													21	71					0	0	0.001882	0	0
FBLN1	2192	broad.mit.edu	37	22	45923749	45923749	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:45923749T>C	uc003bgj.1	+	4	491	c.344T>C	c.(343-345)CTG>CCG	p.L115P	FBLN1_uc003bgg.1_Missense_Mutation_p.L115P|FBLN1_uc003bgh.2_Missense_Mutation_p.L115P|FBLN1_uc010gzz.2_Missense_Mutation_p.L153P|FBLN1_uc003bgi.1_Missense_Mutation_p.L115P	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	115	Anaphylatoxin-like 3.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TGCTGTCTGCTGGGGAGGGCG	0.647													21	97					0	0	0.003330	0	0
PPARA	5465	broad.mit.edu	37	22	46614211	46614211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:46614211C>T	uc003bgw.1	+	6	687	c.421C>T	c.(421-423)CGC>TGC	p.R141C	PPARA_uc003bgx.1_Missense_Mutation_p.R141C|PPARA_uc010hab.1_Missense_Mutation_p.R141C|PPARA_uc003bha.2_Missense_Mutation_p.R141C|PPARA_uc003bhb.1_Missense_Mutation_p.R141C|PPARA_uc010hac.1_Silent_p.T5T	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	141	Nuclear receptor.|NR C4-type.				fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	CAAGTGCGACCGCAGCTGCAA	0.483													76	24					0	0	0.003610	0	0
TUBGCP6	85378	broad.mit.edu	37	22	50682881	50682881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:50682881C>T	uc003bkb.1	-	1	520	c.8G>A	c.(7-9)AGC>AAC	p.S3N	TUBGCP6_uc010har.1_Missense_Mutation_p.S3N|TUBGCP6_uc010has.1_RNA|TUBGCP6_uc010hau.1_Missense_Mutation_p.S3N	NM_020461	NP_065194	Q96RT7	GCP6_HUMAN	tubulin, gamma complex associated protein 6	3					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			ovary(2)|central_nervous_system(2)	4		all_cancers(38;5.79e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.109)|BRCA - Breast invasive adenocarcinoma(115;0.21)		CTGCGTGATGCTGGCCATGCC	0.662													4	31					0	0	0.000602	0	0
SBF1	6305	broad.mit.edu	37	22	50906282	50906282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:50906282G>A	uc003blh.2	-	3	407	c.212C>T	c.(211-213)ACC>ATC	p.T71I	SBF1_uc011arx.1_5'Flank|SBF1_uc003bli.2_Missense_Mutation_p.T71I	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	71	UDENN.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		GTTGATGTCGGTGAGGACAGC	0.607													50	19					0	0	0.003610	0	0
ACR	49	broad.mit.edu	37	22	51178327	51178327	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr22:51178327C>T	uc003bnh.3	+	3	499	c.487C>T	c.(487-489)CTG>TTG	p.L163L	uc003bng.2_5'Flank|ACR_uc010hbh.1_Silent_p.L163L	NM_001097	NP_001088	P10323	ACRO_HUMAN	acrosin precursor	163	Peptidase S1.				acrosome matrix dispersal|activation of adenylate cyclase activity	acrosomal matrix|protein complex	amidase activity|copper ion binding|DNA binding|drug binding|fucose binding|mannose binding|protein binding|serine-type endopeptidase activity|zinc ion binding				0		all_cancers(38;8.8e-15)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;1.1e-06)|LUAD - Lung adenocarcinoma(64;0.247)		GCCGGGCTGCCTGCCCCACTT	0.572													81	35					0	0	0.003610	0	0
CNTN4	152330	broad.mit.edu	37	3	3081776	3081776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:3081776G>A	uc003bpc.2	+	19	2440	c.2219G>A	c.(2218-2220)CGG>CAG	p.R740Q	CNTN4_uc003bpb.1_Missense_Mutation_p.R411Q|CNTN4_uc003bpe.2_Missense_Mutation_p.R412Q|CNTN4_uc003bpf.2_Missense_Mutation_p.R411Q|CNTN4_uc003bpg.2_5'UTR	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	740	Fibronectin type-III 2.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GTGGCCTTCCGGCCCTACGGT	0.512													40	18					0	0	0.002222	0	0
IL5RA	3568	broad.mit.edu	37	3	3144438	3144438	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:3144438C>T	uc011ask.1	-	5	793	c.149G>A	c.(148-150)TGG>TAG	p.W50*	IL5RA_uc010hbq.2_Nonsense_Mutation_p.W50*|IL5RA_uc010hbr.2_Nonsense_Mutation_p.W50*|IL5RA_uc010hbs.2_Nonsense_Mutation_p.W50*|IL5RA_uc011asl.1_Nonsense_Mutation_p.W50*|IL5RA_uc011asm.1_Nonsense_Mutation_p.W50*|IL5RA_uc010hbt.2_Nonsense_Mutation_p.W50*|IL5RA_uc011asn.1_Nonsense_Mutation_p.W50*|IL5RA_uc010hbu.2_Nonsense_Mutation_p.W50*	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	50	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		ATTTGGTTTCCATTGTAAAAG	0.338													18	9					0	0	0.006122	0	0
GRM7	2917	broad.mit.edu	37	3	7620651	7620651	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:7620651G>A	uc003bqm.2	+	8	2332	c.2058G>A	c.(2056-2058)CAG>CAA	p.Q686Q	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.Q686Q|GRM7_uc003bql.2_Silent_p.Q686Q|GRM7_uc003bqn.1_Silent_p.Q269Q|GRM7_uc010hch.1_Silent_p.Q197Q	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	686	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TATTTGAGCAGGGCAAGAAAT	0.443													22	16					0	0	0.001523	0	0
OXTR	5021	broad.mit.edu	37	3	8809153	8809153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:8809153C>T	uc003brc.2	-	3	1343	c.721G>A	c.(721-723)GCC>ACC	p.A241T		NM_000916	NP_000907	P30559	OXYR_HUMAN	oxytocin receptor	241	Cytoplasmic (Potential).				female pregnancy|lactation|muscle contraction	integral to plasma membrane	oxytocin receptor activity|vasopressin receptor activity				0				OV - Ovarian serous cystadenocarcinoma(96;0.15)	Carbetocin(DB01282)	GGCGCCTCGGCCGCCGCCGCT	0.672													6	23					0	0	0.001168	0	0
BRPF1	7862	broad.mit.edu	37	3	9785916	9785916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:9785916C>T	uc003bse.2	+	9	3025	c.2626C>T	c.(2626-2628)CCC>TCC	p.P876S	BRPF1_uc003bsf.2_Missense_Mutation_p.P882S|BRPF1_uc003bsg.2_Missense_Mutation_p.P875S|BRPF1_uc011ati.1_Intron	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	876	Required for RUNX1 and RUNX2 transcriptional activation.				histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					AGGCCTGGGTCCCAACATGTC	0.562													40	149					0	0	0.003610	0	0
ATP2B2	491	broad.mit.edu	37	3	10400474	10400474	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:10400474G>A	uc003bvt.2	-	14	2476	c.2037C>T	c.(2035-2037)TTC>TTT	p.F679F	ATP2B2_uc003bvv.2_Silent_p.F634F|ATP2B2_uc003bvw.2_Silent_p.F634F|ATP2B2_uc010hdo.2_Silent_p.F384F	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	679	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						GGCTGCTGGGGAAGTCGCGGT	0.632													21	14					0	0	0.001216	0	0
ATP2B2	491	broad.mit.edu	37	3	10413714	10413714	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:10413714G>A	uc003bvt.2	-	12	1877	c.1438C>T	c.(1438-1440)CTG>TTG	p.L480L	ATP2B2_uc003bvv.2_Silent_p.L435L|ATP2B2_uc003bvw.2_Silent_p.L435L|ATP2B2_uc010hdo.2_Silent_p.L185L	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	480	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TGGCGTACCAGGTTGTTGTCC	0.577													30	25					0	0	0.001786	0	0
ATG7	10533	broad.mit.edu	37	3	11348436	11348436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:11348436C>T	uc003bwc.2	+	4	352	c.235C>T	c.(235-237)CGT>TGT	p.R79C	ATG7_uc003bwd.2_Missense_Mutation_p.R79C|ATG7_uc011aum.1_Missense_Mutation_p.R79C	NM_006395	NP_006386	O95352	ATG7_HUMAN	APG7 autophagy 7-like isoform a	79					autophagy|cellular membrane fusion|positive regulation of protein modification process|protein lipidation|protein transport	cytoplasm	APG12 activating enzyme activity|protein homodimerization activity|ubiquitin activating enzyme activity			central_nervous_system(1)	1						CACCCCAGCCCGTTGCTGCCC	0.512													85	60					0	0	0.003610	0	0
NUP210	23225	broad.mit.edu	37	3	13417926	13417926	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:13417926G>A	uc003bxv.1	-	10	1241	c.1158C>T	c.(1156-1158)ATC>ATT	p.I386I	NUP210_uc003bxx.2_Silent_p.I58I	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	386	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TTTCAATTCGGATGTTCTGGA	0.542													5	53					0	0	0.001168	0	0
FGD5	152273	broad.mit.edu	37	3	14862658	14862658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:14862658G>A	uc003bzc.2	+	1	2190	c.2080G>A	c.(2080-2082)GAA>AAA	p.E694K	FGD5_uc011avk.1_Missense_Mutation_p.E694K	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	694					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						CAGGATTCTGGAAGTTGACCG	0.517													22	16					0	0	0.001882	0	0
COLQ	8292	broad.mit.edu	37	3	15516452	15516452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:15516452G>A	uc003bzx.2	-	8	661	c.535C>T	c.(535-537)CCT>TCT	p.P179S	COLQ_uc003bzv.2_Missense_Mutation_p.P169S|COLQ_uc003bzz.2_Missense_Mutation_p.P170S|COLQ_uc010heo.2_Missense_Mutation_p.P145S|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Missense_Mutation_p.P38S|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	179	Collagen-like 1.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						CTGGATCCAGGGTAGCCCTAA	0.483													15	94					0	0	0.004007	0	0
GALNTL2	117248	broad.mit.edu	37	3	16254145	16254145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:16254145G>A	uc003car.3	+	6	1742	c.1267G>A	c.(1267-1269)GAT>AAT	p.D423N	GALNTL2_uc003caq.3_Missense_Mutation_p.D156N	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	423	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						CCAAAATCAGGATTCCCATTC	0.537													20	43					0	0	0.007413	0	0
SATB1	6304	broad.mit.edu	37	3	18436089	18436089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:18436089C>T	uc003cbh.2	-	7	2806	c.1071G>A	c.(1069-1071)ATG>ATA	p.M357I	SATB1_uc003cbi.2_Missense_Mutation_p.M357I|SATB1_uc003cbj.2_Missense_Mutation_p.M357I	NM_002971	NP_002962	Q01826	SATB1_HUMAN	special AT-rich sequence binding protein 1	357					cellular component disassembly involved in apoptosis|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter	nuclear matrix|PML body	double-stranded DNA binding|sequence-specific DNA binding			skin(2)|ovary(1)|lung(1)	4						AAGGCTTATTCATAGATCTAC	0.488													64	46					0	0	0.003610	0	0
KAT2B	8850	broad.mit.edu	37	3	20168949	20168949	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:20168949C>G	uc003cbq.2	+	11	2103	c.1657C>G	c.(1657-1659)CGT>GGT	p.R553G		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	553	N-acetyltransferase.				cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TAAAGATGGCCGTGTTATTGG	0.368													15	72					0	0	0.004007	0	0
ZNF385D	79750	broad.mit.edu	37	3	21606174	21606174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:21606174C>T	uc003cce.2	-	3	576	c.168G>A	c.(166-168)ATG>ATA	p.M56I	ZNF385D_uc010hfb.1_RNA	NM_024697	NP_078973	Q9H6B1	Z385D_HUMAN	zinc finger protein 385D	56						nucleus	nucleic acid binding|zinc ion binding			large_intestine(2)|skin(2)|ovary(1)	5						GAATCGGGTCCATCTGTAATG	0.363													6	29					0	0	0.001168	0	0
UBP1	7342	broad.mit.edu	37	3	33481295	33481296	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:33481295_33481296CC>TT	uc003cfq.3	-	1	575_576	c.45_46GG>AA	c.(43-48)CTGGTG>CTAATG	p.V16M	UBP1_uc003cfr.3_Missense_Mutation_p.V16M|UBP1_uc010hga.2_Missense_Mutation_p.V16M	NM_014517	NP_055332	Q9NZI7	UBIP1_HUMAN	upstream binding protein 1 (LBP-1a) isoform a	16					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			kidney(2)	2						AAGTCGTGCACCAGCCCGGACT	0.698													23	83					0	0	0.004672	0	0
ARPP21	10777	broad.mit.edu	37	3	35778694	35778694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:35778694G>A	uc003cgb.2	+	16	1748	c.1484G>A	c.(1483-1485)GGA>GAA	p.G495E	ARPP21_uc003cga.2_Missense_Mutation_p.G441E|ARPP21_uc011axy.1_Missense_Mutation_p.G461E|ARPP21_uc003cgf.2_Missense_Mutation_p.G296E|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	495						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AATCCCGATGGAACTCCTGCA	0.547													16	53					0	0	0.006122	0	0
DCLK3	85443	broad.mit.edu	37	3	36778777	36778777	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:36778777G>A	uc003cgi.2	-	2	1865	c.1374C>T	c.(1372-1374)ATC>ATT	p.I458I		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	458	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						ATAAGTCCATGATCATGAGGG	0.507													13	47					0	0	0.003163	0	0
DCLK3	85443	broad.mit.edu	37	3	36779465	36779465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:36779465G>A	uc003cgi.2	-	2	1177	c.686C>T	c.(685-687)CCA>CTA	p.P229L		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	229						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TTGATCCTCTGGGCCTCTGTC	0.572													32	79					0	0	0.002445	0	0
TRANK1	9881	broad.mit.edu	37	3	36873700	36873700	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:36873700G>A	uc003cgj.2	-	12	5894	c.5592C>T	c.(5590-5592)TTC>TTT	p.F1864F		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2414					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GGATGAACTGGAACTCCAGGA	0.512													23	96					0	0	0.006320	0	0
TRANK1	9881	broad.mit.edu	37	3	36888715	36888715	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:36888715G>A	uc003cgj.2	-	6	3530	c.3228C>T	c.(3226-3228)CTC>CTT	p.L1076L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1626					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GATTCACCATGAGAGATCGAC	0.458													6	13					0	0	0.001984	0	0
MLH1	4292	broad.mit.edu	37	3	37055956	37055956	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:37055956C>T	uc003cgl.2	+	9	771	c.711C>T	c.(709-711)ACC>ACT	p.T237T	MLH1_uc011aye.1_5'UTR|MLH1_uc011ayb.1_5'UTR|MLH1_uc010hge.2_Silent_p.T237T|MLH1_uc003cgn.3_5'UTR|MLH1_uc011ayc.1_Silent_p.T139T|MLH1_uc011ayd.1_5'UTR|MLH1_uc003cgo.2_5'UTR|MLH1_uc010hgg.1_5'UTR|MLH1_uc010hgh.1_Intron|MLH1_uc010hgi.1_5'UTR|MLH1_uc010hgj.1_Intron|MLH1_uc010hgk.2_5'UTR|MLH1_uc010hgl.1_5'UTR	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	237			Missing (in HNPCC2).		mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						AGGATAAAACCCTAGCCTTCA	0.328		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				11	48					0	0	0.003163	0	0
MLH1	4292	broad.mit.edu	37	3	37067129	37067129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:37067129C>T	uc003cgl.2	+	12	1100	c.1040C>T	c.(1039-1041)ACT>ATT	p.T347I	MLH1_uc011aye.1_Missense_Mutation_p.T106I|MLH1_uc011ayb.1_Missense_Mutation_p.T106I|MLH1_uc010hge.2_Missense_Mutation_p.T347I|MLH1_uc003cgn.3_Missense_Mutation_p.T106I|MLH1_uc011ayc.1_Missense_Mutation_p.T249I|MLH1_uc011ayd.1_Missense_Mutation_p.T106I|MLH1_uc003cgo.2_Missense_Mutation_p.T106I|MLH1_uc010hgg.1_Missense_Mutation_p.T6I|MLH1_uc010hgh.1_Missense_Mutation_p.T6I|MLH1_uc010hgi.1_5'UTR|MLH1_uc010hgj.1_5'UTR|MLH1_uc010hgk.2_5'UTR|MLH1_uc010hgl.1_Intron|MLH1_uc010hgn.2_5'UTR|MLH1_uc010hgm.2_RNA|MLH1_uc010hgo.2_5'UTR	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	347					mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						ttAATACAGACTTTGCTACCA	0.353		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				8	13					0	0	0.003080	0	0
GOLGA4	2803	broad.mit.edu	37	3	37379168	37379169	+	Nonsense_Mutation	DNP	AC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:37379168_37379169AC>TT	uc003cgv.2	+	19	6643_6644	c.6339_6340AC>TT	c.(6337-6342)GCACAG>GCTTAG	p.Q2114*	GOLGA4_uc003cgw.2_Nonsense_Mutation_p.Q2129*|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Nonsense_Mutation_p.Q1995*	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	2114	Potential.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						CACAGCTAGCACAGAAGACGAC	0.371													13	11					0	0	0.004672	0	0
VILL	50853	broad.mit.edu	37	3	38048182	38048183	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:38048182_38048183CC>TT	uc003chj.2	+	19	2734_2735	c.2448_2449CC>TT	c.(2446-2451)GCCCGC>GCTTGC	p.R817C	VILL_uc003chl.2_Missense_Mutation_p.R817C	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	817	HP.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TGGACCCTGCCCGCAGGGAGGT	0.673													24	17					0	0	0.004672	0	0
SCN5A	6331	broad.mit.edu	37	3	38595922	38595922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:38595922G>A	uc003cio.2	-	27	4855	c.4661C>T	c.(4660-4662)CCT>CTT	p.P1554L	SCN5A_uc003cin.2_Missense_Mutation_p.P1553L|SCN5A_uc003cil.3_Missense_Mutation_p.P1554L|SCN5A_uc010hhi.2_Missense_Mutation_p.P1536L|SCN5A_uc010hhk.2_Missense_Mutation_p.P1553L|SCN5A_uc011ayr.1_Missense_Mutation_p.P1500L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1554					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GATTTTCTCAGGACTTTGGTC	0.478													24	83					0	0	0.004656	0	0
SCN10A	6336	broad.mit.edu	37	3	38770123	38770123	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:38770123C>T	uc003ciq.2	-	15	2550	c.2550G>A	c.(2548-2550)TGG>TGA	p.W850*		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	850	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGTTCTCAATCCACTCTCCAC	0.517													9	29					0	0	0.004482	0	0
SCN10A	6336	broad.mit.edu	37	3	38770130	38770130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:38770130C>T	uc003ciq.2	-	15	2543	c.2543G>A	c.(2542-2544)GGA>GAA	p.G848E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	848	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AATCCACTCTCCACAGAGGAT	0.512													25	15					0	0	0.003330	0	0
SCN10A	6336	broad.mit.edu	37	3	38770244	38770244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:38770244C>T	uc003ciq.2	-	15	2429	c.2429G>A	c.(2428-2430)GGG>GAG	p.G810E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	810	Helical; Name=S5 of repeat II; (Potential).|II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GTAGTTTTCCCCTAGGAGCTG	0.517													42	32					0	0	0.002222	0	0
SCN10A	6336	broad.mit.edu	37	3	38835425	38835425	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:38835425T>G	uc003ciq.2	-	1	77	c.77A>C	c.(76-78)AAG>ACG	p.K26T		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	26					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGCAATTTGCTTCTCTATCTC	0.498													12	58					0	0	0.001368	0	0
SCN11A	11280	broad.mit.edu	37	3	38945589	38945589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:38945589C>T	uc011ays.1	-	12	1808	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	537					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	TGTGATTTTTCTTGTTCTGGA	0.527													3	18					0	0	0.004672	0	0
TTC21A	199223	broad.mit.edu	37	3	39162532	39162532	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:39162532C>T	uc003cjc.2	+	9	1146	c.969C>T	c.(967-969)ATC>ATT	p.I323I	TTC21A_uc003cje.2_Silent_p.I323I|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Silent_p.I274I	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	323							binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		GTAGTTTCATCGAGCGCACCT	0.527													19	41					0	0	0.001216	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307825	39307825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:39307825C>T	uc003cjl.2	-	2	268	c.176G>A	c.(175-177)AGC>AAC	p.S59N		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	59	Helical; Name=1; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		GGGCTTCTTGCTGTTGGTGAG	0.483													43	26					0	0	0.002222	0	0
CCBP2	1238	broad.mit.edu	37	3	42906050	42906050	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:42906050A>T	uc003cme.2	+	3	235	c.56A>T	c.(55-57)AAT>ATT	p.N19I	CCBP2_uc003cmd.1_Missense_Mutation_p.N19I|CCBP2_uc003cmf.2_Missense_Mutation_p.N19I|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	19	Extracellular (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		GATTCTGAGAATAGCAGCTTC	0.557													15	40					0	0	0.002450	0	0
ZNF662	389114	broad.mit.edu	37	3	42950362	42950362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:42950362G>A	uc003cmi.2	+	3	464	c.112G>A	c.(112-114)GGA>AGA	p.G38R	ZNF662_uc003cmk.2_Missense_Mutation_p.G98R|ZNF662_uc003cmj.2_5'UTR	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	38	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		GGTTCCTCGGGGAGCTCTGGA	0.532													13	63					0	0	0.001855	0	0
ZNF662	389114	broad.mit.edu	37	3	42956688	42956688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:42956688C>T	uc003cmi.2	+	5	1475	c.1123C>T	c.(1123-1125)CTT>TTT	p.L375F	ZNF662_uc003cmk.2_Missense_Mutation_p.L401F|ZNF662_uc003cmj.2_Missense_Mutation_p.L267F	NM_207404	NP_997287	Q6ZS27	ZN662_HUMAN	zinc finger protein 662 isoform 1	375	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.217)		CAAGGCACATCTTATTCGACA	0.448													8	38					0	0	0.003080	0	0
ANO10	55129	broad.mit.edu	37	3	43602842	43602842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:43602842G>A	uc003cmv.2	-	9	1517	c.1346C>T	c.(1345-1347)TCT>TTT	p.S449F	ANO10_uc011azs.1_Missense_Mutation_p.S449F|ANO10_uc003cmw.2_Missense_Mutation_p.S383F|ANO10_uc010hil.2_Missense_Mutation_p.S259F|ANO10_uc011azt.1_Missense_Mutation_p.S338F	NM_018075	NP_060545	Q9NW15	ANO10_HUMAN	transmembrane protein 16K	449	Extracellular (Potential).				cell death	chloride channel complex	chloride channel activity			ovary(2)	2						AGGAAGAAAAGATTCCATAAT	0.413													12	27					0	0	0.001368	0	0
ZNF445	353274	broad.mit.edu	37	3	44492971	44492971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:44492971G>A	uc003cnf.2	-	4	781	c.433C>T	c.(433-435)CCG>TCG	p.P145S	ZNF445_uc011azv.1_Missense_Mutation_p.P145S|ZNF445_uc011azw.1_Missense_Mutation_p.P145S	NM_181489	NP_852466	P59923	ZN445_HUMAN	zinc finger protein 445	145					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(197;0.0514)|Kidney(197;0.0646)		GCAGGGCCCGGGTCCTGGCAA	0.537													33	15					0	0	0.002096	0	0
TGM4	7047	broad.mit.edu	37	3	44929234	44929234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:44929234C>T	uc003coc.3	+	3	320	c.247C>T	c.(247-249)CCC>TCC	p.P83S	TGM4_uc003coa.2_Missense_Mutation_p.P83S|TGM4_uc003cob.2_Intron	NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	83					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	CCCGAGGACGCCCTCAGACCA	0.622													16	21					0	0	0.007413	0	0
TGM4	7047	broad.mit.edu	37	3	44932094	44932094	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:44932094G>A	uc003coc.3	+	4	374	c.301_splice	c.e4-1	p.V101_splice	TGM4_uc003cob.2_Splice_Site	NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)						peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	GGTTTGCTCAGGTCACAGTGG	0.478													63	26					0	0	0.003610	0	0
CDCP1	64866	broad.mit.edu	37	3	45153707	45153707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:45153707C>T	uc003com.2	-	3	658	c.523G>A	c.(523-525)GGA>AGA	p.G175R	CDCP1_uc003con.2_Missense_Mutation_p.G175R	NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	175	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CAGAAGGTTCCGATCCTGACC	0.582													75	30					0	0	0.003610	0	0
SLC6A20	54716	broad.mit.edu	37	3	45812803	45812803	+	Missense_Mutation	SNP	G	A	A	rs141997139		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:45812803G>A	uc011bai.1	-	6	965	c.841C>T	c.(841-843)CTC>TTC	p.L281F	SLC6A20_uc003cow.2_5'UTR|SLC6A20_uc011baj.1_Missense_Mutation_p.L244F	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	281	Helical; Name=7; (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		CTGTTGATGAGGGACACGATG	0.502													16	75					0	0	0.006122	0	0
FYCO1	79443	broad.mit.edu	37	3	46014622	46014622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:46014622G>A	uc003cpb.3	-	6	703	c.497C>T	c.(496-498)TCG>TTG	p.S166L	FYCO1_uc011bal.1_Missense_Mutation_p.S166L	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	166	RUN.				transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		AAAGCCCCTCGACGCCAGGTC	0.483													30	29					0	0	0.002096	0	0
CCR3	1232	broad.mit.edu	37	3	46306776	46306776	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:46306776C>T	uc003cpg.1	+	4	670	c.127C>T	c.(127-129)CTG>TTG	p.L43L	CCR3_uc003cpi.1_Silent_p.L43L|CCR3_uc003cpj.1_Silent_p.L43L|CCR3_uc003cpk.1_Silent_p.L64L|CCR3_uc010hjb.1_Silent_p.L61L|CCR3_uc003cpl.1_Silent_p.L76L	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	43	Helical; Name=1; (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		GCTGTACTCCCTGGTGTTCAC	0.517													5	26					0	0	0.000602	0	0
MAP4	4134	broad.mit.edu	37	3	47957454	47957454	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:47957454G>A	uc003csb.2	-	7	2389	c.1863C>T	c.(1861-1863)TTC>TTT	p.F621F	MAP4_uc003csc.3_Silent_p.F621F|MAP4_uc011bbf.1_Silent_p.F598F|MAP4_uc003csf.3_Silent_p.F638F	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	621					negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		GTGAAATCATGAAAGTAGGTG	0.418													71	33					0	0	0.003610	0	0
COL7A1	1294	broad.mit.edu	37	3	48621170	48621170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:48621170G>A	uc003ctz.2	-	39	4323	c.4322C>T	c.(4321-4323)CCT>CTT	p.P1441L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1441	Triple-helical region.|Interrupted collagenous region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TTTCTTTCCAGGGGGGCCAAC	0.577													61	35					0	0	0.003610	0	0
LAMB2	3913	broad.mit.edu	37	3	49161987	49161987	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:49161987G>A	uc003cwe.2	-	22	3467	c.3168C>T	c.(3166-3168)TGC>TGT	p.C1056C	LAMB2_uc003cwf.1_Silent_p.C1056C	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	1056	Laminin EGF-like 11.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GATCACAGTGGCACTGGTCAG	0.602													10	23					0	0	0.006214	0	0
GNAI2	2771	broad.mit.edu	37	3	50293704	50293705	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:50293704_50293705CC>TT	uc003cyq.1	+	5	666_667	c.545_546CC>TT	c.(544-546)ACC>ATT	p.T182I	GNAI2_uc003cyo.1_Missense_Mutation_p.T166I|GNAI2_uc003cyp.1_Missense_Mutation_p.T166I|GNAI2_uc010hlg.1_Missense_Mutation_p.T101I|GNAI2_uc011bdn.1_Missense_Mutation_p.T145I|GNAI2_uc003cyr.1_Missense_Mutation_p.T101I	NM_002070	NP_002061	P04899	GNAI2_HUMAN	guanine nucleotide binding protein (G protein),	182	GTP (By similarity).	Magnesium (By similarity).			adenosine receptor signaling pathway|cell cycle|cell division|gamma-aminobutyric acid signaling pathway|inhibition of adenylate cyclase activity by G-protein signaling pathway|negative regulation of calcium ion transport via voltage-gated calcium channel activity|platelet activation|response to nutrient|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000288)|KIRC - Kidney renal clear cell carcinoma(197;0.00571)|Kidney(197;0.00651)		CGCGTAAAGACCACGGGGATCG	0.594													27	19					0	0	0.004672	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50513569	50513569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:50513569C>T	uc003daq.2	-	2	306	c.268G>A	c.(268-270)GGC>AGC	p.G90S	CACNA2D2_uc003dap.2_Missense_Mutation_p.G90S	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	90	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	TGCTGGACGCCTCCAAAAATC	0.602													4	10					0	0	0.000248	0	0
DOCK3	1795	broad.mit.edu	37	3	51251606	51251606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:51251606G>A	uc011bds.1	+	14	1203	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	394						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GATTCGGAGAGAAAATCCCAT	0.413													3	16					0	0	0.000602	0	0
IQCF3	401067	broad.mit.edu	37	3	51864696	51864696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:51864696C>T	uc010hlx.1	+	5	685	c.344C>T	c.(343-345)GCT>GTT	p.A115V	IQCF1_uc003dbq.3_Intron|IQCF3_uc010hlw.1_RNA|IQCF3_uc011bdw.1_RNA	NM_001085479	NP_001078948	P0C7M6	IQCF3_HUMAN	IQ motif containing F3	115	IQ.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		ATGTGCAATGCTCTCTGCTTG	0.547													20	50					0	0	0.002299	0	0
DNAH1	25981	broad.mit.edu	37	3	52391976	52391976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:52391976C>T	uc011bef.1	+	24	4304	c.4043C>T	c.(4042-4044)GCC>GTC	p.A1348V		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	1348	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GACCCCACGGCCGTGCAGCCA	0.617													9	31					0	0	0.001368	0	0
SEMA3G	56920	broad.mit.edu	37	3	52469966	52469966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:52469966G>A	uc003dea.1	-	16	2002	c.2002C>T	c.(2002-2004)CGC>TGC	p.R668C		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	668	Ig-like C2-type.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		AGAGCCAGGCGGACCACAGTC	0.657													54	33					0	0	0.003610	0	0
STAB1	23166	broad.mit.edu	37	3	52529459	52529459	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:52529459C>T	uc003dej.2	+	1	104	c.30C>T	c.(28-30)CTC>CTT	p.L10L	STAB1_uc003dei.1_Silent_p.L10L	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	10					cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCCTCCCACTCTGCCTCCTGG	0.692													5	20					0	0	0.000602	0	0
STAB1	23166	broad.mit.edu	37	3	52529498	52529498	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:52529498C>T	uc003dej.2	+	1	143	c.69C>T	c.(67-69)GTC>GTT	p.V23V	STAB1_uc003dei.1_Silent_p.V23V	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	23					cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCAGCTTCGTCAGGGGGCAGG	0.706													5	14					0	0	0.000602	0	0
STAB1	23166	broad.mit.edu	37	3	52551961	52551961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:52551961C>T	uc003dej.2	+	45	4777	c.4703C>T	c.(4702-4704)ACC>ATC	p.T1568I	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1568	Extracellular (Potential).|EGF-like 13.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		AGGACATGTACCTGCGACACA	0.597													16	50					0	0	0.006122	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54798283	54798283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:54798283G>A	uc003dhf.2	+	13	1333	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E335K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.E163K	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	429	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TGATGTGCAGGAGAATGTCAT	0.488													17	79					0	0	0.006122	0	0
LRTM1	57408	broad.mit.edu	37	3	54952821	54952821	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:54952821G>A	uc003dhl.2	-	3	837	c.703C>T	c.(703-705)CCT>TCT	p.P235S	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	235	Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TCAGGAGCAGGAAGAGGGCAG	0.607													4	15					0	0	0.000248	0	0
FLNB	2317	broad.mit.edu	37	3	58134480	58134480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:58134480G>A	uc003djj.2	+	36	6157	c.5992G>A	c.(5992-5994)GAG>AAG	p.E1998K	FLNB_uc010hne.2_Missense_Mutation_p.E2029K|FLNB_uc003djk.2_Missense_Mutation_p.E1987K|FLNB_uc010hnf.2_Missense_Mutation_p.E1974K|FLNB_uc003djl.2_Missense_Mutation_p.E1818K|FLNB_uc003djm.2_Missense_Mutation_p.E1805K|FLNB_uc010hng.1_5'Flank	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1998	Filamin 19.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		GGTCCAGTCGGAGATTGGTGA	0.577													10	40					0	0	0.006214	0	0
DNASE1L3	1776	broad.mit.edu	37	3	58190528	58190528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:58190528G>A	uc003djo.1	-	4	498	c.401C>T	c.(400-402)CCC>CTC	p.P134L	DNASE1L3_uc011bfd.1_Missense_Mutation_p.P104L|DNASE1L3_uc003djp.1_Missense_Mutation_p.P134L|DNASE1L3_uc003djq.1_Missense_Mutation_p.P134L	NM_004944	NP_004935	Q13609	DNSL3_HUMAN	deoxyribonuclease I-like 3 precursor	134					apoptosis|DNA catabolic process	nucleus	calcium ion binding|DNA binding|endodeoxyribonuclease activity, producing 5'-phosphomonoesters			breast(2)|large_intestine(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.00021)|KIRC - Kidney renal clear cell carcinoma(284;0.0445)|Kidney(284;0.0556)|OV - Ovarian serous cystadenocarcinoma(275;0.202)		GACCACAAAGGGCTCCCTGGA	0.522													8	33					0	0	0.004482	0	0
PTPRG	5793	broad.mit.edu	37	3	61734583	61734583	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:61734583C>T	uc003dlb.2	+	2	836	c.117C>T	c.(115-117)CAC>CAT	p.H39H	PTPRG_uc003dlc.2_Silent_p.H39H|PTPRG_uc003dla.3_RNA	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	39	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity	p.H39H(1)		ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		GGGCCCTGCACGAGAATAGAC	0.557													14	16					0	0	0.003163	0	0
KBTBD8	84541	broad.mit.edu	37	3	67053899	67053899	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:67053899C>T	uc003dmy.2	+	3	561	c.508C>T	c.(508-510)CGA>TGA	p.R170*	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	170	BACK.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		ACTCGGAGATCGATCAAAAGA	0.378													13	46					0	0	0.001855	0	0
LMOD3	56203	broad.mit.edu	37	3	69168224	69168225	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:69168224_69168225GG>AA	uc003dns.2	-	2	1490_1491	c.1281_1282CC>TT	c.(1279-1284)CCCCCT>CCTTCT	p.P428S	LMOD3_uc003dnt.2_Missense_Mutation_p.P428S	NM_198271	NP_938012	Q0VAK6	LMOD3_HUMAN	leiomodin 3 (fetal)	428						cytoplasm|cytoskeleton	tropomyosin binding			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.88e-05)|Epithelial(33;0.000839)|LUSC - Lung squamous cell carcinoma(21;0.0119)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.205)|Kidney(39;0.24)		CACATCCCAGGGGGCAGCCCCA	0.54													28	22					0	0	0.004672	0	0
FRMD4B	23150	broad.mit.edu	37	3	69230588	69230589	+	Missense_Mutation	DNP	AA	TC	TC			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:69230588_69230589AA>TC	uc003dnv.2	-	21	2602_2603	c.2312_2313TT>GA	c.(2311-2313)GTT>GGA	p.V771G	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnu.2_Missense_Mutation_p.V423G|FRMD4B_uc011bga.1_Missense_Mutation_p.V615G	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	771						cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		TTGAAGTAGAAACATTCTGTTT	0.485													15	48					0	0	0.004672	0	0
POU1F1	5449	broad.mit.edu	37	3	87310438	87310438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:87310438C>T	uc003dqq.1	-	5	775	c.650G>A	c.(649-651)CGA>CAA	p.R217Q	POU1F1_uc010hoj.1_Missense_Mutation_p.R243Q	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	217	Homeobox.				negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		AGTTGTTCTTCGTTTTCTTTT	0.289													9	6					0	0	0.000978	0	0
HTR1F	3355	broad.mit.edu	37	3	88040303	88040303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:88040303G>A	uc003dqr.2	+	2	562	c.404G>A	c.(403-405)AGG>AAG	p.R135K		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	135	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	GCCAGGAAAAGGACTCCAAAG	0.438													13	37					0	0	0.001855	0	0
HTR1F	3355	broad.mit.edu	37	3	88040393	88040393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:88040393G>A	uc003dqr.2	+	2	652	c.494G>A	c.(493-495)GGA>GAA	p.G165E		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	165	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	AGGCACCAAGGAACTAGCAGA	0.413													16	15					0	0	0.004990	0	0
OR5K4	403278	broad.mit.edu	37	3	98073149	98073149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:98073149C>T	uc011bgv.1	+	1	452	c.452C>T	c.(451-453)GCT>GTT	p.A151V		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GCCTTCAAAGCTGGAAACCTG	0.458													11	58					0	0	0.000978	0	0
ST3GAL6	10402	broad.mit.edu	37	3	98507296	98507298	+	Missense_Mutation	TNP	CCC	TTA	TTA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:98507296_98507298CCC>TTA	uc003dsz.2	+	8	981_983	c.745_747CCC>TTA	c.(745-747)CCC>TTA	p.P249L	ST3GAL6_uc003dsy.2_Missense_Mutation_p.P163L|ST3GAL6_uc003dta.2_Missense_Mutation_p.P131L|ST3GAL6_uc003dtb.2_Missense_Mutation_p.P105L|ST3GAL6_uc003dtc.2_Missense_Mutation_p.P249L|ST3GAL6_uc010hpd.2_Missense_Mutation_p.P302L	NM_006100	NP_006091	Q9Y274	SIA10_HUMAN	alpha2,3-sialyltransferase VI	249	Lumenal (Potential).				amino sugar metabolic process|glycolipid metabolic process|protein glycosylation|protein lipoylation	integral to Golgi membrane	sialyltransferase activity			ovary(1)	1						AAAAGTGTTTCCCAAAAATCAGG	0.379													7	56					0	0	0.004672	0	0
CCDC54	84692	broad.mit.edu	37	3	107097110	107097110	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:107097110C>T	uc003dwi.1	+	1	923	c.676C>T	c.(676-678)CAA>TAA	p.Q226*		NM_032600	NP_115989	Q8NEL0	CCD54_HUMAN	coiled-coil domain containing 54	226											0						ACGTAACCATCAAAATGCATC	0.378													42	34					0	0	0.001951	0	0
MYH15	22989	broad.mit.edu	37	3	108147366	108147366	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:108147366G>A	uc003dxa.1	-	28	3792	c.3735C>T	c.(3733-3735)ACC>ACT	p.T1245T		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1245	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCTCAACACGGGTCAGGAGGT	0.512													73	53					0	0	0.003610	0	0
TRAT1	50852	broad.mit.edu	37	3	108565935	108565935	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:108565935A>G	uc003dxi.1	+	4	317	c.173A>G	c.(172-174)GAA>GGA	p.E58G	TRAT1_uc010hpx.1_Missense_Mutation_p.E21G	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	58	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						TATTATATTGAAGACACACCA	0.269													10	41					0	0	0.001855	0	0
MORC1	27136	broad.mit.edu	37	3	108724101	108724101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:108724101G>A	uc003dxl.2	-	19	1916	c.1829C>T	c.(1828-1830)TCA>TTA	p.S610L	MORC1_uc011bhn.1_Missense_Mutation_p.S589L	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	610					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CTCAAAGGATGAAAGAGATTC	0.343													27	20					0	0	0.005443	0	0
MORC1	27136	broad.mit.edu	37	3	108819338	108819338	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:108819338G>A	uc003dxl.2	-	5	327	c.240C>T	c.(238-240)ATC>ATT	p.I80I	MORC1_uc011bhn.1_Silent_p.I80I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	80					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CAAAGTAAATGATGTCTGAAG	0.433													40	30					0	0	0.003610	0	0
ZBTB20	26137	broad.mit.edu	37	3	114069633	114069633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:114069633G>A	uc003ebi.2	-	4	1472	c.1292C>T	c.(1291-1293)TCC>TTC	p.S431F	ZBTB20_uc003ebj.2_Missense_Mutation_p.S358F|ZBTB20_uc010hqp.2_Missense_Mutation_p.S358F|ZBTB20_uc003ebk.2_Missense_Mutation_p.S358F|ZBTB20_uc003ebl.2_Missense_Mutation_p.S358F|ZBTB20_uc003ebm.2_Missense_Mutation_p.S358F|ZBTB20_uc003ebn.2_Missense_Mutation_p.S358F|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	431					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		CTCCGGAGAGGAAGCACCTGT	0.597													36	72					0	0	0.005524	0	0
ILDR1	286676	broad.mit.edu	37	3	121712464	121712464	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:121712464G>A	uc003ees.2	-	7	1238	c.1132C>T	c.(1132-1134)CAG>TAG	p.Q378*	ILDR1_uc003eeq.2_Nonsense_Mutation_p.Q346*|ILDR1_uc003eer.2_Nonsense_Mutation_p.Q334*|ILDR1_uc010hrg.2_Nonsense_Mutation_p.Q289*	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	378	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		TGGAGCTCCTGGTGGAAATCA	0.602													33	31					0	0	0.004289	0	0
CD86	942	broad.mit.edu	37	3	121825305	121825305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:121825305G>A	uc003eet.2	+	4	777	c.661G>A	c.(661-663)GAA>AAA	p.E221K	CD86_uc011bjo.1_Missense_Mutation_p.E139K|CD86_uc011bjp.1_Missense_Mutation_p.E109K|CD86_uc003eeu.2_Missense_Mutation_p.E215K	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1	221	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	CTGTATTCTGGAAACTGACAA	0.388													62	42					0	0	0.003610	0	0
CASR	846	broad.mit.edu	37	3	122003859	122003859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:122003859G>A	uc003eev.3	+	7	3430	c.3058G>A	c.(3058-3060)GAA>AAA	p.E1020K	CASR_uc003eew.3_Missense_Mutation_p.E1030K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	1020	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCAGTGCGGGGAAACGGACTT	0.602													18	46					0	0	0.001216	0	0
FAM162A	26355	broad.mit.edu	37	3	122123196	122123196	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:122123196C>T	uc003eez.2	+	3	339	c.249C>T	c.(247-249)ATC>ATT	p.I83I	FAM162A_uc011bjq.1_Silent_p.I83I	NM_014367	NP_055182	Q96A26	F162A_HUMAN	growth and transformation-dependent protein	83						integral to membrane				ovary(1)	1						AAGATGAAATCCCAGAGACTG	0.413													36	16					0	0	0.004878	0	0
PARP9	83666	broad.mit.edu	37	3	122271276	122271276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:122271276G>A	uc010hri.2	-	5	1346	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S	PARP9_uc003eff.3_Missense_Mutation_p.P366S|PARP9_uc011bjs.1_Missense_Mutation_p.P366S|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Missense_Mutation_p.P366S|PARP9_uc003efh.2_Missense_Mutation_p.P401S|PARP9_uc003efj.2_Missense_Mutation_p.P366S	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	401	Macro 2.				cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		TGAGGTTTAGGAAATTCTGAA	0.318													7	33					0	0	0.004482	0	0
ADCY5	111	broad.mit.edu	37	3	123166728	123166728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:123166728G>A	uc003egh.1	-	1	665	c.665C>T	c.(664-666)CCG>CTG	p.P222L		NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	222					activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TTTGTCCGACGGGAACTTCTT	0.567													4	31					0	0	0.000602	0	0
MYLK	4638	broad.mit.edu	37	3	123383085	123383085	+	Missense_Mutation	SNP	C	T	T	rs1142295		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:123383085C>T	uc003ego.2	-	23	4134	c.3852G>A	c.(3850-3852)ATG>ATA	p.M1284I	MYLK_uc010hrr.2_5'UTR|MYLK_uc011bjv.1_Missense_Mutation_p.M84I|MYLK_uc011bjw.1_Missense_Mutation_p.M1284I|MYLK_uc003egp.2_Missense_Mutation_p.M1215I|MYLK_uc003egq.2_Missense_Mutation_p.M1284I|MYLK_uc003egr.2_Missense_Mutation_p.M1215I|MYLK_uc003egs.2_Missense_Mutation_p.M1108I	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	1284	Actin-binding (calcium/calmodulin- insensitive) (By similarity).|Ig-like C2-type 8.			M -> I (in Ref. 3; AAD15922/AAD15923/ AAD15924).	aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		TCTCCACCTTCATGTGCTCGC	0.627													18	80					0	0	0.007413	0	0
KALRN	8997	broad.mit.edu	37	3	123946845	123946845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:123946845C>T	uc003ehg.2	+	2	203	c.76C>T	c.(76-78)CGG>TGG	p.R26W	KALRN_uc010hrv.1_Missense_Mutation_p.R26W|KALRN_uc003ehf.1_Missense_Mutation_p.R26W|KALRN_uc011bjy.1_Missense_Mutation_p.R26W	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	26					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						AGGGTCTTTTCGGAATGATGG	0.483													33	101					0	0	0.005524	0	0
KALRN	8997	broad.mit.edu	37	3	123987692	123987692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:123987692G>A	uc003ehg.2	+	5	680	c.553G>A	c.(553-555)GAA>AAA	p.E185K	KALRN_uc010hrv.1_Missense_Mutation_p.E185K|KALRN_uc003ehf.1_Missense_Mutation_p.E185K|KALRN_uc011bjy.1_Missense_Mutation_p.E185K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	185					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						GGAGTGGATCGAACTGCGGCT	0.602													29	18					0	0	0.005443	0	0
KALRN	8997	broad.mit.edu	37	3	124053238	124053238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:124053238G>A	uc003ehg.2	+	9	1664	c.1537G>A	c.(1537-1539)GAG>AAG	p.E513K	KALRN_uc010hrv.1_Missense_Mutation_p.E513K|KALRN_uc003ehf.1_Missense_Mutation_p.E513K|KALRN_uc011bjy.1_Missense_Mutation_p.E513K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	513					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CGTGGTGCATGAGGTGTTACA	0.627													15	66					0	0	0.003163	0	0
KALRN	8997	broad.mit.edu	37	3	124181382	124181382	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:124181382G>A	uc003ehg.2	+	25	4054	c.3927G>A	c.(3925-3927)TGG>TGA	p.W1309*	KALRN_uc010hrv.1_Nonsense_Mutation_p.W1300*|KALRN_uc003ehf.1_Nonsense_Mutation_p.W1309*|KALRN_uc011bjy.1_Nonsense_Mutation_p.W1300*|KALRN_uc003ehh.1_Nonsense_Mutation_p.W655*	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1309	DH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCTACCTGTGGGAAATGACCA	0.453													8	28					0	0	0.003080	0	0
KALRN	8997	broad.mit.edu	37	3	124210176	124210176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:124210176G>A	uc003ehg.2	+	31	4715	c.4588G>A	c.(4588-4590)GAG>AAG	p.E1530K	KALRN_uc010hrv.1_Missense_Mutation_p.E1521K|KALRN_uc003ehf.1_Missense_Mutation_p.E1530K|KALRN_uc011bjy.1_Missense_Mutation_p.E1521K	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1530	PH 1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ACAGACCTCAGAGCTGGGTGT	0.567													6	46					0	0	0.001168	0	0
MUC13	56667	broad.mit.edu	37	3	124632432	124632432	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:124632432T>C	uc003ehq.1	-	7	1082	c.1058A>G	c.(1057-1059)AAC>AGC	p.N353S		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	353	EGF-like 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						GCTCTGTGGGTTAGGCCTTTG	0.433													11	37					0	0	0.000673	0	0
SLC12A8	84561	broad.mit.edu	37	3	124802869	124802869	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:124802869G>A	uc003ehv.3	-	14	2121	c.2010C>T	c.(2008-2010)ATC>ATT	p.I670I	SLC12A8_uc003ehw.3_Silent_p.I699I|SLC12A8_uc003eht.3_Silent_p.I471I|SLC12A8_uc003ehu.3_Silent_p.I423I|SLC12A8_uc010hry.2_Missense_Mutation_p.S331L	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	670					potassium ion transport	integral to membrane	symporter activity				0						GCGCCAAGATGATCTGCTCCT	0.567													14	4					0	0	0.003163	0	0
OSBPL11	114885	broad.mit.edu	37	3	125271248	125271248	+	Silent	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:125271248G>T	uc003eic.2	-	9	2168	c.1431C>A	c.(1429-1431)TCC>TCA	p.S477S		NM_022776	NP_073613	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	477					lipid transport		lipid binding			ovary(3)|breast(1)|kidney(1)	5						CTCCCTGGGTGGAAGAACTGC	0.448													5	26					3.59834e-05	4.53779e-05	0.001168	1	0
ZXDC	79364	broad.mit.edu	37	3	126180810	126180810	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:126180810G>A	uc003eiv.2	-	6	1749	c.1695C>T	c.(1693-1695)CCC>CCT	p.P565P	ZXDC_uc010hsh.2_RNA|ZXDC_uc003eix.2_Silent_p.P565P	NM_025112	NP_079388	Q2QGD7	ZXDC_HUMAN	ZXD family zinc finger C isoform 1	565					positive regulation of transcription, DNA-dependent	nucleus	C2H2 zinc finger domain binding|identical protein binding|LRR domain binding|nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.155)		CCAGGACCAGGGGTTCCATCG	0.587													18	47					0	0	0.007413	0	0
TXNRD3IT1	645840	broad.mit.edu	37	3	126291345	126291345	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:126291345C>T	uc003ejc.2	-	3	521	c.42G>A	c.(40-42)CTG>CTA	p.L14L		NM_001039783	NP_001034872	Q6F5E7	TR3N_HUMAN	thioredoxin reductase 3 intronic transcript 1	14											0						GCTCAGCTTTCAGCTCCGGCT	0.463													8	27					0	0	0.004482	0	0
DNAJB8	165721	broad.mit.edu	37	3	128181695	128181695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:128181695C>T	uc003ekk.1	-	3	2055	c.394G>A	c.(394-396)GGG>AGG	p.G132R	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	132					protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		GAGAAGGCCCCCCTCAGGCCA	0.597													4	36					0	0	0.000248	0	0
IL20RB	53833	broad.mit.edu	37	3	136710872	136710872	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:136710872C>T	uc003eri.1	+	5	873	c.624C>T	c.(622-624)TTC>TTT	p.F208F	IL20RB_uc003erj.1_Intron|IL20RB_uc010hud.1_Silent_p.F66F	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	208	Extracellular (Potential).|Fibronectin type-III 2.					integral to membrane	receptor activity			ovary(1)	1						CCCAGACATTCGTGAAGGCCA	0.542													16	64					0	0	0.004007	0	0
ACPL2	92370	broad.mit.edu	37	3	141011793	141011793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:141011793C>T	uc003etu.2	+	8	1488	c.1189C>T	c.(1189-1191)CCA>TCA	p.P397S	ACPL2_uc003etv.2_Missense_Mutation_p.P397S|ACPL2_uc011bna.1_Missense_Mutation_p.P359S|ACPL2_uc011bnb.1_Missense_Mutation_p.P380S	NM_152282	NP_689495	Q8TE99	ACPL2_HUMAN	acid phosphatase-like 2 precursor	397						extracellular region	acid phosphatase activity			skin(1)	1						AGCCAGGTTCCCAAGGTTTGC	0.507													15	107					0	0	0.004990	0	0
ATR	545	broad.mit.edu	37	3	142212099	142212099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:142212099G>A	uc003eux.3	-	35	6075	c.5953C>T	c.(5953-5955)CCT>TCT	p.P1985S		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1985	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCATTTTCAGGAAAACATAAT	0.368								Other_conserved_DNA_damage_response_genes					6	23					0	0	0.003080	0	0
ATR	545	broad.mit.edu	37	3	142280112	142280112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:142280112G>A	uc003eux.3	-	5	1444	c.1322C>T	c.(1321-1323)TCT>TTT	p.S441F		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	441					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TGCTCTTTTAGAAGGGTTTAG	0.378								Other_conserved_DNA_damage_response_genes					14	54					0	0	0.002450	0	0
SLC9A9	285195	broad.mit.edu	37	3	143513907	143513907	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:143513907G>A	uc003evn.2	-	4	651	c.469C>T	c.(469-471)CAA>TAA	p.Q157*	SLC9A9_uc011bnk.1_Nonsense_Mutation_p.Q31*	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	157					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						CCTAAGTTTTGAAAAAAGTGT	0.368													10	26					0	0	0.006214	0	0
PLSCR4	57088	broad.mit.edu	37	3	145918825	145918825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:145918825C>T	uc010huy.2	-	5	723	c.394G>A	c.(394-396)GAA>AAA	p.E132K	PLSCR4_uc010huz.2_Missense_Mutation_p.E132K|PLSCR4_uc003evt.3_Missense_Mutation_p.E132K|PLSCR4_uc010hva.2_Intron|PLSCR4_uc003evu.3_Intron	NM_001128305	NP_001121777	Q9NRQ2	PLS4_HUMAN	phospholipid scramblase 4 isoform a	132	Cytoplasmic (By similarity).				blood coagulation|phospholipid scrambling	integral to membrane	calcium ion binding|phospholipid scramblase activity|SH3 domain binding				0						TACATACTTTCCAGAGGCTCA	0.318													13	9					0	0	0.001855	0	0
MED12L	116931	broad.mit.edu	37	3	150911370	150911370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:150911370G>A	uc003eyp.2	+	14	2100	c.2062G>A	c.(2062-2064)GAA>AAA	p.E688K	MED12L_uc011bnz.1_Missense_Mutation_p.E548K|MED12L_uc003eyn.2_Missense_Mutation_p.E723K|MED12L_uc003eyo.2_Missense_Mutation_p.E688K	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	688					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GGTGAAGAGGGAAAAGCCAAG	0.408													15	55					0	0	0.002450	0	0
IGSF10	285313	broad.mit.edu	37	3	151166802	151166802	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:151166802G>A	uc011bod.1	-	4	967	c.967C>T	c.(967-969)CAG>TAG	p.Q323*		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	323					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTCCAGACTGATCTGTCATA	0.433													16	55					0	0	0.004007	0	0
MME	4311	broad.mit.edu	37	3	154898230	154898230	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:154898230G>A	uc010hvr.1	+	23	2446	c.2235G>A	c.(2233-2235)AAG>AAA	p.K745K	MME_uc003fab.1_Silent_p.K745K|MME_uc003fac.1_Silent_p.K745K|MME_uc003fad.1_Silent_p.K745K|MME_uc003fae.1_Silent_p.K745K	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	745	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	ATCCAGAAAAGAAGTGCCGGG	0.418													8	53					0	0	0.003080	0	0
PLCH1	23007	broad.mit.edu	37	3	155311920	155311920	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:155311920G>A	uc011bok.1	-	3	521	c.244C>T	c.(244-246)CAC>TAC	p.H82Y	PLCH1_uc011boj.1_Missense_Mutation_p.H82Y|PLCH1_uc011bol.1_Missense_Mutation_p.H64Y	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	82	PH.				lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GCTTGTCTGTGGAATATTTCA	0.493													30	17					0	0	0.001512	0	0
KCNAB1	7881	broad.mit.edu	37	3	156175270	156175270	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:156175270A>G	uc003far.2	+	4	450	c.386A>G	c.(385-387)TAT>TGT	p.Y129C	KCNAB1_uc011bon.1_Missense_Mutation_p.Y129C|KCNAB1_uc003fas.2_Missense_Mutation_p.Y118C|KCNAB1_uc003fat.2_Missense_Mutation_p.Y111C|KCNAB1_uc010hvt.1_Missense_Mutation_p.Y111C|KCNAB1_uc011boo.1_Missense_Mutation_p.Y5C	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	129						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			ACCATCGCCTATGAAAGTGGT	0.463													61	39					0	0	0.003610	0	0
SCHIP1	29970	broad.mit.edu	37	3	159605519	159605519	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:159605519C>T	uc003fcs.1	+	5	1085	c.1019C>T	c.(1018-1020)TCT>TTT	p.S340F	SCHIP1_uc003fcq.1_Missense_Mutation_p.S416F|SCHIP1_uc003fcr.1_Missense_Mutation_p.S329F|SCHIP1_uc003fct.1_Missense_Mutation_p.S327F|SCHIP1_uc010hvz.1_Missense_Mutation_p.S300F|SCHIP1_uc003fcu.1_Missense_Mutation_p.S97F|SCHIP1_uc003fcv.1_Missense_Mutation_p.S113F	NM_014575	NP_055390	Q9P0W5	SCHI1_HUMAN	schwannomin interacting protein 1	340						cytoplasm	identical protein binding|protein binding			ovary(1)|central_nervous_system(1)	2			LUSC - Lung squamous cell carcinoma(72;0.00523)|Lung(72;0.00534)			TCTTCCTATTCTGATAGAGAC	0.468													97	77					0	0	0.003610	0	0
IFT80	57560	broad.mit.edu	37	3	160037581	160037581	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:160037581A>T	uc011boy.1	-	9	1357	c.924T>A	c.(922-924)TTT>TTA	p.F308L	IFT80_uc003fda.2_RNA|IFT80_uc003fdb.1_Missense_Mutation_p.F171L|IFT80_uc003fdd.1_5'UTR|IFT80_uc003fde.1_Missense_Mutation_p.F171L	NM_020800	NP_065851	Q9P2H3	IFT80_HUMAN	WD repeat domain 56	308						cilium axoneme|microtubule basal body				ovary(1)	1			Lung(72;0.00334)|LUSC - Lung squamous cell carcinoma(72;0.00523)			ATGTTACTTGAAAATTTTTCC	0.388													10	32					0	0	0.006214	0	0
OTOL1	131149	broad.mit.edu	37	3	161221586	161221586	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:161221586C>T	uc011bpb.1	+	4	1290	c.1290C>T	c.(1288-1290)CTC>CTT	p.L430L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	430	C1q.					collagen					0						CCTCTCTCCTCGTCATCTTGA	0.488													4	17					0	0	0.000602	0	0
OTOL1	131149	broad.mit.edu	37	3	161221723	161221723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:161221723C>T	uc011bpb.1	+	4	1427	c.1427C>T	c.(1426-1428)TCA>TTA	p.S476L		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	476						collagen					0						TCTGGAATTTCACCATAAATT	0.373													14	5					0	0	0.002450	0	0
SI	6476	broad.mit.edu	37	3	164727096	164727096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:164727096C>T	uc003fei.2	-	35	4212	c.4150G>A	c.(4150-4152)GAA>AAA	p.E1384K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1384	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TTCATCTTTTCATTGTAAAAG	0.373										HNSCC(35;0.089)			18	26					0	0	0.001216	0	0
SERPINI2	5276	broad.mit.edu	37	3	167170733	167170733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:167170733C>T	uc003fer.1	-	5	1013	c.955G>A	c.(955-957)GGA>AGA	p.G319R	SERPINI2_uc003fes.1_Missense_Mutation_p.G329R|SERPINI2_uc003fet.1_Missense_Mutation_p.G319R	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	319					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						CCTGTTATTCCAGAAAGGTCG	0.299													14	5					0	0	0.003163	0	0
WDR49	151790	broad.mit.edu	37	3	167196728	167196728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:167196728C>T	uc003fev.1	-	15	2338	c.2032G>A	c.(2032-2034)GAA>AAA	p.E678K	WDR49_uc003feu.1_Missense_Mutation_p.E503K|WDR49_uc011bpd.1_Missense_Mutation_p.E643K|WDR49_uc003few.1_3'UTR	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	678										large_intestine(1)|ovary(1)|skin(1)	3						GCTTTTCGTTCATGATGCAGA	0.318													11	10					0	0	0.000673	0	0
MECOM	2122	broad.mit.edu	37	3	169099133	169099133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:169099133C>T	uc011bpj.1	-	2	620	c.217G>A	c.(217-219)GAT>AAT	p.D73N	MECOM_uc003ffl.2_Missense_Mutation_p.D45N|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Missense_Mutation_p.D73N|MECOM_uc011bpl.1_Missense_Mutation_p.D73N	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						ATGGGGATATCATCAGGGATG	0.473													19	53					0	0	0.001216	0	0
LOC100128164	100128164	broad.mit.edu	37	3	169664277	169664277	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:169664277G>A	uc011bpp.1	-	2		c.3526C>T				NR_027622				Homo sapiens cDNA FLJ41016 fis, clone UTERU2018784.												0						TGTTGCACAGGATCTTGTTGT	0.517													32	20					0	0	0.002096	0	0
SKIL	6498	broad.mit.edu	37	3	170078455	170078455	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:170078455C>T	uc003fgu.2	+	2	1048	c.336C>T	c.(334-336)TCC>TCT	p.S112S	SKIL_uc011bps.1_Silent_p.S92S|SKIL_uc003fgv.2_Silent_p.S112S|SKIL_uc003fgw.2_Silent_p.S112S	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	112					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			CTCGGCATTCCCAAGAAAGCA	0.478													113	84					0	0	0.003610	0	0
GNB4	59345	broad.mit.edu	37	3	179131545	179131545	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:179131545A>G	uc003fjv.3	-	7	735	c.455T>C	c.(454-456)TTA>TCA	p.L152S	GNB4_uc003fju.3_Missense_Mutation_p.L63S	NM_021629	NP_067642	Q9HAV0	GBB4_HUMAN	guanine nucleotide-binding protein, beta-4	152	WD 3.				cellular response to glucagon stimulus|energy reserve metabolic process	plasma membrane	signal transducer activity			skin(2)	2	all_cancers(143;2.01e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.237)			GCTGTCATCTAAAAAACGACA	0.378													7	21					0	0	0.003080	0	0
LAMP3	27074	broad.mit.edu	37	3	182871618	182871618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:182871618G>A	uc003flh.3	-	2	835	c.611C>T	c.(610-612)ACA>ATA	p.T204I		NM_014398	NP_055213	Q9UQV4	LAMP3_HUMAN	lysosomal-associated membrane protein 3	204	Lumenal (Potential).|Thr-rich.				cell proliferation	integral to membrane|lysosomal membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;9.14e-14)|Ovarian(172;0.0355)		all cancers(12;2.91e-44)|Epithelial(37;5.52e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;4.16e-21)			AGGTGCAGCTGTGCGGGTGGT	0.552													82	51					0	0	0.003610	0	0
KLHL6	89857	broad.mit.edu	37	3	183209742	183209742	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:183209742C>T	uc003flr.2	-	7	1897	c.1839G>A	c.(1837-1839)AGG>AGA	p.R613R	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_3'UTR|KLHL6_uc010hxk.1_RNA	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	613										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			CGGGCACGATCCTGCGGATGT	0.672													54	25					0	0	0.003610	0	0
CHRD	8646	broad.mit.edu	37	3	184100658	184100658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:184100658C>T	uc003fov.2	+	9	1243	c.997C>T	c.(997-999)CCC>TCC	p.P333S	CHRD_uc003fow.2_Intron|CHRD_uc003fox.2_Missense_Mutation_p.P333S|CHRD_uc003foy.2_Intron|CHRD_uc010hyc.2_5'UTR|CHRD_uc011brr.1_5'UTR	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	333	CHRD 2.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AACCCAGGTTCCCTTGAGGCT	0.587													20	10					0	0	0.001216	0	0
CHRD	8646	broad.mit.edu	37	3	184104473	184104473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:184104473G>A	uc003fov.2	+	16	2372	c.2126G>A	c.(2125-2127)GGG>GAG	p.G709E	CHRD_uc003fow.2_Missense_Mutation_p.G339E|CHRD_uc003fox.2_Missense_Mutation_p.G709E|CHRD_uc003foy.2_Missense_Mutation_p.G339E|CHRD_uc010hyc.2_Missense_Mutation_p.G299E|CHRD_uc011brr.1_Intron	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	709	VWFC 2.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTCTTCGAGGGGCAGCAGCGC	0.701													18	10					0	0	0.001882	0	0
AHSG	197	broad.mit.edu	37	3	186338622	186338622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:186338622C>T	uc003fqk.3	+	7	1088	c.1007C>T	c.(1006-1008)CCC>CTC	p.P336L	AHSG_uc003fql.3_Missense_Mutation_p.P337L|AHSG_uc003fqm.3_Missense_Mutation_p.P335L|AHSG_uc010hyp.2_Missense_Mutation_p.P299L	NM_001622	NP_001613	P02765	FETUA_HUMAN	alpha-2-HS-glycoprotein	336					acute-phase response|negative regulation of bone mineralization|negative regulation of insulin receptor signaling pathway|pinocytosis|positive regulation of phagocytosis|regulation of inflammatory response|skeletal system development	extracellular space	cysteine-type endopeptidase inhibitor activity|protein binding				0	all_cancers(143;3.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.27e-20)	GBM - Glioblastoma multiforme(93;0.0463)		GTGTCGCACCCCCGGAAAACA	0.612													39	26					0	0	0.004289	0	0
HRG	3273	broad.mit.edu	37	3	186395302	186395302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:186395302G>A	uc003fqq.2	+	7	1231	c.1208G>A	c.(1207-1209)GGA>GAA	p.G403E		NM_000412	NP_000403	P04196	HRG_HUMAN	histidine-rich glycoprotein precursor	403	His/Pro-rich (HRR).				fibrinolysis|platelet activation|platelet degranulation	extracellular region|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding			ovary(1)|central_nervous_system(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0683)		catccccatggacaccatccc	0.234													4	5					0	0	0.000602	0	0
ATP13A5	344905	broad.mit.edu	37	3	193023421	193023421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:193023421C>T	uc011bsq.1	-	23	2605	c.2605G>A	c.(2605-2607)GAG>AAG	p.E869K		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	869					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		GCTTCCTGCTCTGATAATGAA	0.443													47	28					0	0	0.003610	0	0
GP5	2814	broad.mit.edu	37	3	194118166	194118166	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:194118166C>T	uc003ftv.1	-	2	877	c.846G>A	c.(844-846)CCG>CCA	p.P282P		NM_004488	NP_004479	P40197	GPV_HUMAN	glycoprotein V (platelet) precursor	282	LRR 9.|Extracellular (Potential).				blood coagulation, intrinsic pathway|cell adhesion|platelet activation	integral to plasma membrane				skin(2)|breast(1)	3	all_cancers(143;6.64e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;7.38e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.06e-05)		AGAGCACCCCCGGGAGCTCTG	0.637													7	35					0	0	0.001984	0	0
MUC4	4585	broad.mit.edu	37	3	195515992	195515992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:195515992C>T	uc011bto.1	-	2	2919	c.2459G>A	c.(2458-2460)GGA>GAA	p.G820E	MUC4_uc003fvo.2_Intron|MUC4_uc003fvp.2_Intron|MUC4_uc010hzu.1_Missense_Mutation_p.G702E	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	825	Ser-rich.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GGTGGATATTCCTTCGCTTCC	0.582													11	66					0	0	0.002450	0	0
TNK2	10188	broad.mit.edu	37	3	195605370	195605370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:195605370G>A	uc003fvu.1	-	8	1651	c.1108C>T	c.(1108-1110)CAC>TAC	p.H370Y	TNK2_uc003fvs.1_Missense_Mutation_p.H402Y|TNK2_uc003fvt.1_Missense_Mutation_p.H433Y|TNK2_uc010hzw.1_RNA|TNK2_uc003fvv.1_Missense_Mutation_p.H200Y	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	370	Protein kinase.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	TCTGGCTTGTGAGCCCAGCAC	0.627													52	34					0	0	0.003610	0	0
OSTalpha	200931	broad.mit.edu	37	3	195955025	195955025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:195955025G>A	uc003fwd.2	+	5	603	c.402G>A	c.(400-402)ATG>ATA	p.M134I	OSTalpha_uc010iac.1_Missense_Mutation_p.M18I|OSTalpha_uc003fwe.2_Missense_Mutation_p.M1I	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	134	Helical; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		TGCTGGTCATGGTGGAAGGCT	0.522													45	189					0	0	0.003610	0	0
KIAA0226	9711	broad.mit.edu	37	3	197427641	197427641	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr3:197427641G>A	uc003fyc.2	-	7	1287	c.1104C>T	c.(1102-1104)TCC>TCT	p.S368S	KIAA0226_uc003fyd.3_Silent_p.S308S|KIAA0226_uc003fye.1_Silent_p.S75S|KIAA0226_uc003fyf.2_Silent_p.S201S|KIAA0226_uc003fyg.2_Silent_p.S361S	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	368	Ser-rich.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		GGTCCCCTAAGGAAGAGGCAG	0.592													10	40					0	0	0.006214	0	0
PIGG	54872	broad.mit.edu	37	4	514917	514917	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:514917A>G	uc003gak.3	+	7	1323	c.1187A>G	c.(1186-1188)AAG>AGG	p.K396R	PIGG_uc003gaj.3_Missense_Mutation_p.K396R|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Missense_Mutation_p.K263R|PIGG_uc003gal.3_Missense_Mutation_p.K307R|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_Missense_Mutation_p.K274R|PIGG_uc003gam.2_Intron|PIGG_uc003gan.2_Missense_Mutation_p.K307R	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	396	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						TTGGAGGAAAAGCATTCAGAA	0.478													3	71					0	0	0.004672	0	0
HTT	3064	broad.mit.edu	37	4	3149759	3149759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:3149759C>T	uc011bvq.1	+	27	3474	c.3329C>T	c.(3328-3330)TCA>TTA	p.S1110L		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1108					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CTGAGAAGTTCATGGGCCTCT	0.577													18	16					0	0	0.001216	0	0
LOC348926	348926	broad.mit.edu	37	4	3948523	3948523	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:3948523C>T	uc011bvu.1	-	5		c.1812G>A			LOC348926_uc003ghn.2_Intron	NR_024253				Homo sapiens hypothetical protein LOC348926, mRNA (cDNA clone IMAGE:4546485), partial cds.												0						GCTGGCACGTCTGTGGGTTGT	0.652													19	35					0	0	0.007413	0	0
HTRA3	94031	broad.mit.edu	37	4	8271918	8271918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:8271918G>A	uc003gla.2	+	1	427	c.223G>A	c.(223-225)GAG>AAG	p.E75K	HTRA3_uc003gkz.2_Missense_Mutation_p.E75K	NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	75	IGFBP N-terminal.|Kazal-like.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						CGAGAGCCTGGAGTGCGTGCG	0.731													6	5					0	0	0.001984	0	0
USP17	391627	broad.mit.edu	37	4	9361046	9361046	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:9361046G>A	uc011bwn.1	+	1		c.938G>A				NM_001105662	NP_001099132			ubiquitin specific peptidase 17												0						CAGAACACATGACTTCTTGTC	0.473													15	65					0	0	0.003163	0	0
SLC2A9	56606	broad.mit.edu	37	4	9922133	9922133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:9922133C>T	uc003gmc.2	-	7	939	c.878G>A	c.(877-879)AGC>AAC	p.S293N	SLC2A9_uc003gmd.2_Missense_Mutation_p.S264N	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	293	Cytoplasmic (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						CTGCACGCGGCTCTCAGCCAG	0.592													11	15					0	0	0.000673	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400816	11400816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:11400816G>A	uc003gmq.2	-	2	1137	c.814C>T	c.(814-816)CGG>TGG	p.R272W		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	272	PAPS.					Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GGGTGCGCCCGGCCTTTGGAC	0.493													43	24					0	0	0.006999	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400917	11400917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:11400917G>A	uc003gmq.2	-	2	1036	c.713C>T	c.(712-714)TCG>TTG	p.S238L		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	238						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GATCTGCGGCGACAGCTTTAG	0.562													15	16					0	0	0.004007	0	0
BOD1L	259282	broad.mit.edu	37	4	13602303	13602303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:13602303G>A	uc003gmz.1	-	10	6338	c.6221C>T	c.(6220-6222)TCC>TTC	p.S2074F	BOD1L_uc010idr.1_Missense_Mutation_p.S1411F	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2074							DNA binding			ovary(5)|breast(1)	6						GGTACTGGTGGAAATAATCAA	0.433													13	10					0	0	0.001368	0	0
FGFBP1	9982	broad.mit.edu	37	4	15937700	15937700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:15937700C>T	uc003gom.2	-	2	674	c.556G>A	c.(556-558)GTG>ATG	p.V186M		NM_005130	NP_005121	Q14512	FGFP1_HUMAN	fibroblast growth factor binding protein 1	186					cell-cell signaling|negative regulation of cell proliferation|signal transduction	extracellular space|plasma membrane	heparin binding				0						GTCTGGGTCACTGCTAGGCTA	0.552													40	33					0	0	0.001951	0	0
DCAF16	54876	broad.mit.edu	37	4	17805284	17805284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:17805284G>A	uc003gpn.2	-	3	1542	c.481C>T	c.(481-483)CCC>TCC	p.P161S	DCAF16_uc003gpo.2_RNA	NM_017741	NP_060211	Q9NXF7	DCA16_HUMAN	DDB1 and CUL4 associated factor 16	161						CUL4 RING ubiquitin ligase complex				ovary(1)	1						TCAGGTATGGGAGTGGCTCTA	0.463													27	78					0	0	0.005443	0	0
PACRGL	133015	broad.mit.edu	37	4	20706352	20706352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:20706352C>T	uc010iek.2	+	3	513	c.122C>T	c.(121-123)TCC>TTC	p.S41F	PACRGL_uc003gpu.2_RNA|PACRGL_uc010iei.1_Missense_Mutation_p.S89F|PACRGL_uc003gpz.2_Missense_Mutation_p.S41F|PACRGL_uc011bxm.1_Missense_Mutation_p.S41F|PACRGL_uc003gqa.2_Missense_Mutation_p.S41F|PACRGL_uc003gpx.3_RNA|PACRGL_uc003gpv.2_Missense_Mutation_p.S41F|PACRGL_uc003gpw.2_RNA|PACRGL_uc010iej.1_RNA|PACRGL_uc011bxn.1_Missense_Mutation_p.S41F|PACRGL_uc003gpy.2_Missense_Mutation_p.S41F	NM_145048	NP_659485	Q8N7B6	PACRL_HUMAN	PARK2 co-regulated-like isoform 1	41							binding				0						GGAAGCAAATCCTCATTGTCA	0.388													11	37					0	0	0.001368	0	0
GBA3	57733	broad.mit.edu	37	4	22820495	22820495	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:22820495C>T	uc003gqp.3	+	5	1450	c.1359C>T	c.(1357-1359)GCC>GCT	p.A453A	GBA3_uc010iep.2_Silent_p.A146A|GBA3_uc011bxo.1_Silent_p.A454A	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	453					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						ACACATCGGCCAAGGAATAAG	0.488													10	12					0	0	0.000673	0	0
SEL1L3	23231	broad.mit.edu	37	4	25823696	25823696	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:25823696C>T	uc003gru.3	-	7	1364	c.1212G>A	c.(1210-1212)GGG>GGA	p.G404G		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	404						integral to membrane	binding				0						CATACCTGCTCCCTCCAATAA	0.512													7	28					0	0	0.001984	0	0
ARAP2	116984	broad.mit.edu	37	4	36126533	36126533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:36126533G>A	uc003gsq.1	-	22	4035	c.3697C>T	c.(3697-3699)CCA>TCA	p.P1233S		NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1233	Rho-GAP.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTGACCCCTGGAAGAGAACGT	0.368													9	5					0	0	0.001368	0	0
WDR19	57728	broad.mit.edu	37	4	39276558	39276558	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:39276558G>A	uc003gtv.2	+	33	3850	c.3696G>A	c.(3694-3696)AAG>AAA	p.K1232K	WDR19_uc011byi.1_Silent_p.K1072K|WDR19_uc003gtw.1_Silent_p.K829K	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	1232					cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						AATACAAAAAGAAGATCGAGG	0.443													5	26					0	0	0.001984	0	0
N4BP2	55728	broad.mit.edu	37	4	40121980	40121980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:40121980C>T	uc003guy.3	+	9	2587	c.2249C>T	c.(2248-2250)TCC>TTC	p.S750F	N4BP2_uc010ifq.2_Missense_Mutation_p.S670F|N4BP2_uc010ifr.2_Missense_Mutation_p.S670F	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	750						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						AATGAAAAATCCTCACCTGGT	0.378													15	48					0	0	0.003163	0	0
CHRNA9	55584	broad.mit.edu	37	4	40350969	40350969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:40350969G>A	uc003gva.1	+	4	452	c.436G>A	c.(436-438)GAT>AAT	p.D146N		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	146	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	GATCACCTGGGATGCACCGGC	0.507													29	38					0	0	0.001512	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351359	40351359	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:40351359C>T	uc003gva.1	+	4	842	c.826C>T	c.(826-828)CTG>TTG	p.L276L		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	276	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	AGTGACCATCCTGTTGGCCAT	0.512													64	53					0	0	0.003610	0	0
DCAF4L1	285429	broad.mit.edu	37	4	41984085	41984085	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:41984085C>T	uc003gwk.2	+	1	373	c.276C>T	c.(274-276)GTC>GTT	p.V92V		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	92										skin(1)	1						TGAACCAGGTCGAAGTCGAAG	0.537													13	37					0	0	0.003163	0	0
SLC30A9	10463	broad.mit.edu	37	4	42077787	42077787	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:42077787T>C	uc003gwl.2	+	16	1678	c.1532T>C	c.(1531-1533)TTT>TCT	p.F511S	SLC30A9_uc011byx.1_Missense_Mutation_p.F271S	NM_006345	NP_006336	Q6PML9	ZNT9_HUMAN	solute carrier family 30 (zinc transporter),	511					nucleotide-excision repair|zinc ion transport	cytoskeleton|integral to membrane|nucleus	cation transmembrane transporter activity|nucleotide binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)	3						AAACAAGATTTTGACCAAATG	0.294													21	17					0	0	0.003954	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895374	42895374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:42895374G>A	uc003gwt.2	+	1	91	c.91G>A	c.(91-93)GAA>AAA	p.E31K		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	31					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						AGTTCTGAAGGAAGTGTATGA	0.522													15	41					0	0	0.003163	0	0
GRXCR1	389207	broad.mit.edu	37	4	42965092	42965092	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:42965092C>T	uc003gwt.2	+	2	568	c.568C>T	c.(568-570)CGA>TGA	p.R190*		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	190	Glutaredoxin.				cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						CGAACGATGCCGACGAGTTTC	0.423													16	71					0	0	0.006122	0	0
GABRG1	2565	broad.mit.edu	37	4	46043126	46043126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:46043126G>A	uc003gxb.2	-	9	1429	c.1277C>T	c.(1276-1278)TCT>TTT	p.S426F		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	426	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TTCCCTCCAAGATCCTGTTCT	0.418													6	17					0	0	0.001168	0	0
FRYL	285527	broad.mit.edu	37	4	48622756	48622756	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:48622756G>A	uc003gyh.1	-	6	819	c.214C>T	c.(214-216)CCT>TCT	p.P72S	FRYL_uc003gyk.2_Missense_Mutation_p.P72S|FRYL_uc003gyl.1_Missense_Mutation_p.P123S|FRYL_uc003gym.1_Missense_Mutation_p.P72S	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	72					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						AGTAAGGAAGGGAGACAGTGC	0.413													9	33					0	0	0.004482	0	0
SPATA18	132671	broad.mit.edu	37	4	52943176	52943176	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:52943176C>T	uc003gzl.2	+	7	1268	c.990C>T	c.(988-990)ACC>ACT	p.T330T	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.T298T|SPATA18_uc003gzk.1_Silent_p.T330T	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	330					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			AGGCTGAGACCGTTCAGCGGA	0.622													6	5					0	0	0.001168	0	0
SPATA18	132671	broad.mit.edu	37	4	52945987	52945987	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:52945987C>T	uc003gzl.2	+	9	1535	c.1257C>T	c.(1255-1257)TTC>TTT	p.F419F	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Silent_p.F387F|SPATA18_uc003gzk.1_Silent_p.F419F	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	419					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			TCAGTGACTTCATCCAGGAGA	0.428													26	80					0	0	0.003954	0	0
SCFD2	152579	broad.mit.edu	37	4	53773705	53773705	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:53773705C>T	uc003gzu.2	-	7	1895	c.1761G>A	c.(1759-1761)GAG>GAA	p.E587E	SCFD2_uc010igm.2_Intron	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	587					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			AATCTGGCCTCTCGGGATGAA	0.403													16	29					0	0	0.004007	0	0
PDGFRA	5156	broad.mit.edu	37	4	55155011	55155011	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:55155011A>C	uc003han.3	+	20	3051	c.2720A>C	c.(2719-2721)AAT>ACT	p.N907T	PDGFRA_uc003haa.2_Missense_Mutation_p.N667T	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	907	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	ACTTTCTACAATAAGATCAAG	0.522			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			16	18					0	0	0.006122	0	0
KDR	3791	broad.mit.edu	37	4	55964319	55964319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:55964319C>T	uc003has.2	-	17	2796	c.2494G>A	c.(2494-2496)GAC>AAC	p.D832N	KDR_uc003hat.1_Missense_Mutation_p.D832N	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	832	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTCAGCCGGTCTCTGGGGAAT	0.433			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			5	20					0	0	0.000602	0	0
EPHA5	2044	broad.mit.edu	37	4	66361136	66361136	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:66361136C>T	uc003hcy.2	-	4	1229	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K	EPHA5_uc003hcx.2_Missense_Mutation_p.E277K|EPHA5_uc003hcz.2_Missense_Mutation_p.E346K|EPHA5_uc011cah.1_Missense_Mutation_p.E346K|EPHA5_uc011cai.1_Missense_Mutation_p.E346K|EPHA5_uc003hda.2_Missense_Mutation_p.E346K	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	346	Extracellular (Potential).|Cys-rich.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						GGATCAGACTCTCTCCTGAAA	0.468										TSP Lung(17;0.13)			23	71					0	0	0.003954	0	0
STAP1	26228	broad.mit.edu	37	4	68424559	68424559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:68424559C>T	uc003hde.3	+	1	114	c.32C>T	c.(31-33)CCT>CTT	p.P11L	STAP1_uc003hdf.2_Missense_Mutation_p.P11L	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	11					cellular membrane fusion|intracellular protein transport	cytoplasm					0						AAACCAGCCCCTCGCAGGATC	0.443													46	44					0	0	0.002522	0	0
UGT2B4	7363	broad.mit.edu	37	4	70346610	70346610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:70346610C>T	uc003hek.3	-	6	1376	c.1329G>A	c.(1327-1329)ATG>ATA	p.M443I	UGT2B4_uc011cap.1_Missense_Mutation_p.M307I|UGT2B4_uc003hel.3_Silent_p.*370*	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	443					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						TTGATAATTTCATAGCATTCT	0.299													16	46					0	0	0.006122	0	0
HTN1	3346	broad.mit.edu	37	4	70918837	70918837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:70918837C>T	uc003hex.2	+	2	111	c.44C>T	c.(43-45)TCC>TTC	p.S15F		NM_002159	NP_002150	P15515	HIS1_HUMAN	histatin 1 precursor	15					biomineral tissue development|defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular region	protein binding			skin(1)	1						CTCATGATTTCCATGATTGTA	0.323													9	8					0	0	0.004482	0	0
C4orf40	401137	broad.mit.edu	37	4	71024129	71024129	+	Missense_Mutation	SNP	C	T	T	rs147899116	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:71024129C>T	uc003hfa.3	+	4	233	c.160C>T	c.(160-162)CGC>TGC	p.R54C	C4orf40_uc003hfb.3_Missense_Mutation_p.R54C	NM_214711	NP_999876	Q6MZM9	CD040_HUMAN	hypothetical protein LOC401137 precursor	54						extracellular region					0						TCTTTATTATCGCCCAGTGAA	0.443													47	85					0	0	0.003610	0	0
AMBN	258	broad.mit.edu	37	4	71472009	71472009	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:71472009C>T	uc003hfl.2	+	13	981	c.906C>T	c.(904-906)TTC>TTT	p.F302F		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	302					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			GCGGTGACTTCACTCTGGAAT	0.577													15	21					0	0	0.004007	0	0
AMBN	258	broad.mit.edu	37	4	71472046	71472046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:71472046G>A	uc003hfl.2	+	13	1018	c.943G>A	c.(943-945)GGC>AGC	p.G315S		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	315					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			TGCCACCAAAGGCCCTGAGAA	0.562													13	10					0	0	0.001855	0	0
ANKRD17	26057	broad.mit.edu	37	4	73944492	73944492	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:73944492G>A	uc003hgp.2	-	31	7392	c.7275C>T	c.(7273-7275)GTC>GTT	p.V2425V	ANKRD17_uc003hgo.2_Silent_p.V2312V|ANKRD17_uc003hgq.2_Silent_p.V2174V|ANKRD17_uc003hgr.2_Silent_p.V2424V	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	2425					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TCCCAATAGGGACTGGAACTT	0.502													14	19					0	0	0.001855	0	0
ANKRD17	26057	broad.mit.edu	37	4	74019668	74019668	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:74019668T>C	uc003hgp.2	-	6	1280	c.1163A>G	c.(1162-1164)GAA>GGA	p.E388G	ANKRD17_uc003hgo.2_Missense_Mutation_p.E275G|ANKRD17_uc003hgq.2_Missense_Mutation_p.E388G|ANKRD17_uc003hgr.2_Missense_Mutation_p.E388G|ANKRD17_uc011cbd.1_Missense_Mutation_p.E17G	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	388	ANK 5.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGCCCCATTTTCTAGCAGCAA	0.408													36	34					0	0	0.006999	0	0
AREG	374	broad.mit.edu	37	4	75312457	75312457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:75312457G>A	uc011cbl.1	+	2	478	c.268G>A	c.(268-270)GAA>AAA	p.E90K		NM_001657	NP_001648	P15514	AREG_HUMAN	amphiregulin preproprotein	90					cell proliferation|cell-cell signaling|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|positive regulation of DNA replication	cell surface|extracellular space|integral to membrane	cytokine activity|growth factor activity				0			Lung(101;0.196)			GTATGATAACGAACCACAAAT	0.448													21	70					0	0	0.006320	0	0
PPEF2	5470	broad.mit.edu	37	4	76794280	76794280	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:76794280C>T	uc003hix.2	-	12	1863	c.1506G>A	c.(1504-1506)AAG>AAA	p.K502K	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Silent_p.K502K	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	502	Catalytic.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GAGCACCCACCTTGCGGTTGT	0.478													13	22					0	0	0.002450	0	0
FRAS1	80144	broad.mit.edu	37	4	79369291	79369291	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:79369291A>T	uc003hlb.2	+	44	6535	c.6095A>T	c.(6094-6096)GAT>GTT	p.D2032V		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2031	CSPG 8.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						ACCTACCAGGATATCCTAGCT	0.547													8	9					0	0	0.004482	0	0
FRAS1	80144	broad.mit.edu	37	4	79396729	79396729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:79396729G>A	uc003hlb.2	+	54	8260	c.7820G>A	c.(7819-7821)GGG>GAG	p.G2607E		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2602	Calx-beta 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCCCAACCTGGGCAACAGGAC	0.602													33	35					0	0	0.004878	0	0
BMP2K	55589	broad.mit.edu	37	4	79786837	79786837	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:79786837C>T	uc003hlk.2	+	10	1360	c.1194C>T	c.(1192-1194)GTC>GTT	p.V398V	BMP2K_uc010ijl.1_RNA|BMP2K_uc003hlj.2_Silent_p.V398V	NM_198892	NP_942595	Q9NSY1	BMP2K_HUMAN	BMP-2 inducible kinase isoform a	398						nucleus	ATP binding|protein serine/threonine kinase activity			lung(1)	1						CTGTTAAAGTCCTTGCTCCTG	0.438													11	44					0	0	0.001855	0	0
GK2	2712	broad.mit.edu	37	4	80328862	80328862	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:80328862G>A	uc003hlu.2	-	1	511	c.493C>T	c.(493-495)CAA>TAA	p.Q165*		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	165					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						ACAGCCTTTTGGACGTTTCTC	0.433													18	50					0	0	0.006122	0	0
PRKG2	5593	broad.mit.edu	37	4	82013576	82013576	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:82013576C>T	uc003hmh.2	-	17	2171	c.2157G>A	c.(2155-2157)CTG>CTA	p.L719L	PRKG2_uc011ccf.1_Silent_p.L299L|PRKG2_uc011ccg.1_Silent_p.L299L|PRKG2_uc011cch.1_Silent_p.L690L	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	719	AGC-kinase C-terminal.				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TCCGTGCTTTCAGTCCCTCCC	0.239													15	26					0	0	0.006122	0	0
CDS1	1040	broad.mit.edu	37	4	85562043	85562043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:85562043G>A	uc011ccv.1	+	10	1430	c.932G>A	c.(931-933)CGA>CAA	p.R311Q	CDS1_uc010ike.1_Missense_Mutation_p.R115Q	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	311					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		GTGGAATACCGAAGTGATGTA	0.363													47	43					0	0	0.003610	0	0
ABCG2	9429	broad.mit.edu	37	4	89052264	89052264	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:89052264C>T	uc003hrg.2	-	5	973	c.480G>A	c.(478-480)CGG>CGA	p.R160R	ABCG2_uc003hrh.2_Silent_p.R160R|ABCG2_uc003hrf.2_Silent_p.R30R	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	160	ABC transporter.|Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	CCCTGTTAATCCGTTCGTTTT	0.423													45	46					0	0	0.003214	0	0
GRID2	2895	broad.mit.edu	37	4	94411870	94411870	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:94411870T>A	uc011cdt.1	+	12	2197	c.1939T>A	c.(1939-1941)TCT>ACT	p.S647T	GRID2_uc011cdu.1_Missense_Mutation_p.S552T	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	647	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	TGTTATCTCATCTTACACGGC	0.443													8	11					0	0	0.003080	0	0
UNC5C	8633	broad.mit.edu	37	4	96256594	96256594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:96256594G>A	uc003htp.1	-	2	467	c.313C>T	c.(313-315)CAC>TAC	p.H105Y	UNC5C_uc010ilc.1_Missense_Mutation_p.H105Y|UNC5C_uc003htq.2_Missense_Mutation_p.H105Y	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	105	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TCTACTATGTGGTCCTTCTGA	0.408													6	17					0	0	0.001984	0	0
ADH1A	124	broad.mit.edu	37	4	100200661	100200661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:100200661G>A	uc003hur.1	-	8	1096	c.1025C>T	c.(1024-1026)TCA>TTA	p.S342L	uc003hum.1_Intron|ADH1A_uc011ceg.1_Missense_Mutation_p.S342L	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	342					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	TGCATCCAATGAAAACTTCTT	0.333													22	21					0	0	0.002780	0	0
ADH1B	125	broad.mit.edu	37	4	100235009	100235009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:100235009G>A	uc003hus.3	-	6	881	c.797C>T	c.(796-798)TCG>TTG	p.S266L	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.S226L|ADH1B_uc011ceh.1_Missense_Mutation_p.S111L|ADH1B_uc011cei.1_Missense_Mutation_p.S226L	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	266					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GACTTCAAACGAAAAATCCAC	0.463													43	110					0	0	0.003610	0	0
PPP3CA	5530	broad.mit.edu	37	4	101947023	101947023	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:101947023C>T	uc011cen.1	-	14	2240	c.1565G>A	c.(1564-1566)TGA>TAA	p.*522*	PPP3CA_uc003hvu.2_Silent_p.*512*|PPP3CA_uc010ilj.2_Silent_p.*470*|PPP3CA_uc003hvt.2_Silent_p.*499*|PPP3CA_uc003hvs.2_Silent_p.*455*|PPP3CA_uc010ilk.2_Silent_p.*290*	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	522					protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		AGGAAGTGGTCACTGAATATT	0.448													23	65					0	0	0.002780	0	0
CFI	3426	broad.mit.edu	37	4	110687870	110687870	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:110687870C>T	uc003hzr.3	-	2	376	c.168G>A	c.(166-168)GAG>GAA	p.E56E	CFI_uc011cft.1_Silent_p.E56E|CFI_uc003hzs.3_Silent_p.E56E	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	56	Kazal-like.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		CACAGGTGCCCTCAATGCATC	0.453													19	23					0	0	0.001216	0	0
C4orf32	132720	broad.mit.edu	37	4	113107979	113107979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:113107979G>A	uc003iah.2	+	2	468	c.284G>A	c.(283-285)CGA>CAA	p.R95Q	C4orf32_uc003iai.2_RNA	NM_152400	NP_689613	Q8N8J7	CD032_HUMAN	chromosome 4 open reading frame 32	95						integral to membrane					0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.00198)		TTTGGAGAACGAATAGTGGAA	0.413													44	40					0	0	0.003610	0	0
C4orf21	55345	broad.mit.edu	37	4	113468529	113468529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:113468529G>A	uc003iau.2	-	24	5721	c.5510C>T	c.(5509-5511)CCC>CTC	p.P1837L	C4orf21_uc003iav.2_RNA|C4orf21_uc003iat.2_Missense_Mutation_p.P295L	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	659						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		TAGCTGTTTGGGATCCCCAAC	0.358													5	29					0	0	0.000602	0	0
TRPC3	7222	broad.mit.edu	37	4	122854038	122854038	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:122854038G>A	uc003ieg.2	-	2	449	c.375C>T	c.(373-375)ATC>ATT	p.I125I	TRPC3_uc010inr.2_Silent_p.I52I|TRPC3_uc003ief.2_Silent_p.I52I|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	40	Cytoplasmic (Potential).|ANK 1.				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GCACCACTGGGATGTTGCCGT	0.652													10	29					0	0	0.000978	0	0
KIAA1109	84162	broad.mit.edu	37	4	123176012	123176012	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:123176012C>T	uc003ieh.2	+	37	6172	c.6127C>T	c.(6127-6129)CCC>TCC	p.P2043S	KIAA1109_uc003iel.1_5'UTR|KIAA1109_uc003iek.2_Missense_Mutation_p.P662S	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	2043					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ATGGCTTGTTCCCATTGACCA	0.358													13	7					0	0	0.001855	0	0
KIAA1109	84162	broad.mit.edu	37	4	123249499	123249499	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:123249499T>C	uc003ieh.2	+	64	11281	c.11236T>C	c.(11236-11238)TAC>CAC	p.Y3746H	KIAA1109_uc003iem.2_Missense_Mutation_p.Y137H	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3746					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GTTTTATATTTACAGGAAACC	0.363													7	12					0	0	0.001984	0	0
FAT4	79633	broad.mit.edu	37	4	126372220	126372220	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:126372220A>G	uc003ifj.3	+	9	10049	c.10049A>G	c.(10048-10050)AAG>AGG	p.K3350R	FAT4_uc011cgp.1_Missense_Mutation_p.K1648R|FAT4_uc003ifi.1_Missense_Mutation_p.K828R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3350	Cadherin 32.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CAGATCAATAAGAAGACTGGA	0.413													29	27					0	0	0.007291	0	0
FAT4	79633	broad.mit.edu	37	4	126400924	126400924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:126400924C>T	uc003ifj.3	+	14	12502	c.12502C>T	c.(12502-12504)CGC>TGC	p.R4168C	FAT4_uc011cgp.1_Intron|FAT4_uc003ifi.1_Missense_Mutation_p.R1646C	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4168	EGF-like 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CGCTTGTACTCGCAGCCCATG	0.418													9	15					0	0	0.006214	0	0
FAT4	79633	broad.mit.edu	37	4	126411568	126411568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:126411568G>A	uc003ifj.3	+	17	13591	c.13591G>A	c.(13591-13593)GGG>AGG	p.G4531R	FAT4_uc011cgp.1_Missense_Mutation_p.G2772R|FAT4_uc003ifi.1_Missense_Mutation_p.G2008R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4531	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCAGTGCAGGGGGAAGAAGGC	0.532													11	31					0	0	0.000673	0	0
FAT4	79633	broad.mit.edu	37	4	126412679	126412679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:126412679G>A	uc003ifj.3	+	17	14702	c.14702G>A	c.(14701-14703)GGA>GAA	p.G4901E	FAT4_uc011cgp.1_Missense_Mutation_p.G3142E|FAT4_uc003ifi.1_Missense_Mutation_p.G2378E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4901	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GCCGAGGGAGGACCTGTGGGC	0.537													19	23					0	0	0.001882	0	0
SCLT1	132320	broad.mit.edu	37	4	129809847	129809847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:129809847G>A	uc003igp.2	-	20	2497	c.1991C>T	c.(1990-1992)TCA>TTA	p.S664L	SCLT1_uc003ign.2_Missense_Mutation_p.S328L|SCLT1_uc003igo.2_Missense_Mutation_p.S274L|SCLT1_uc003igq.2_Missense_Mutation_p.S283L|SCLT1_uc010iob.1_Missense_Mutation_p.S151L	NM_144643	NP_653244	Q96NL6	SCLT1_HUMAN	sodium channel associated protein 1	664	Potential.					centrosome				ovary(3)|lung(1)|central_nervous_system(1)	5						CTGGGAAGCTGAAGCAGCTCT	0.383													12	42					0	0	0.001855	0	0
PCDH18	54510	broad.mit.edu	37	4	138451032	138451032	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:138451032C>T	uc003ihe.3	-	1	2598	c.2211G>A	c.(2209-2211)AGG>AGA	p.R737R	PCDH18_uc003ihf.3_Silent_p.R730R|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Silent_p.R517R|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	737	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ATTCGGCCACCCTGCAGTTAT	0.478													22	24					0	0	0.002299	0	0
MGST2	4258	broad.mit.edu	37	4	140599715	140599715	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:140599715T>C	uc003ihy.2	+	2	329	c.77T>C	c.(76-78)GTT>GCT	p.V26A	MGST2_uc010ioi.1_Intron	NM_002413	NP_002404	Q99735	MGST2_HUMAN	microsomal glutathione S-transferase 2	26	Helical; (Potential).				glutathione biosynthetic process|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane|plasma membrane	enzyme activator activity|glutathione peroxidase activity|glutathione transferase activity|leukotriene-C4 synthase activity			ovary(1)	1	all_hematologic(180;0.162)				Glutathione(DB00143)	GCTTTGCAAGTTGGAAAGGCA	0.308													9	2					0	0	0.004482	0	0
GYPA	2993	broad.mit.edu	37	4	145032548	145032548	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:145032548C>T	uc003ijo.3	-	7	568	c.452G>A	c.(451-453)TGA>TAA	p.*151*	GYPA_uc003ijn.2_Intron|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Silent_p.*118*|GYPA_uc003ijp.3_Silent_p.*119*|GYPA_uc010ioq.2_Silent_p.*138*|GYPA_uc010ior.2_Silent_p.*86*	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	151					interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					AACAGATTCTCATTGATCACT	0.323													8	14					0	0	0.006214	0	0
ABCE1	6059	broad.mit.edu	37	4	146031360	146031360	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:146031360C>T	uc003ijx.2	+	6	951	c.511C>T	c.(511-513)CAA>TAA	p.Q171*	ABCE1_uc003ijy.2_Nonsense_Mutation_p.Q171*|ABCE1_uc010iot.2_RNA	NM_001040876	NP_001035809	P61221	ABCE1_HUMAN	ATP-binding cassette, sub-family E, member 1	171	ABC transporter 1.				interspecies interaction between organisms|response to virus|RNA catabolic process	mitochondrion	ATP binding|ATPase activity|electron carrier activity|iron-sulfur cluster binding|ribonuclease inhibitor activity			skin(1)	1	all_hematologic(180;0.151)					CATCAAACCTCAATATGTAGA	0.343													34	31					0	0	0.002852	0	0
FHDC1	85462	broad.mit.edu	37	4	153897264	153897264	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:153897264C>G	uc003inf.2	+	11	2896	c.2821C>G	c.(2821-2823)CGC>GGC	p.R941G		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	941					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					TGTGTGGTCACGCCAGAACTC	0.697													19	16					0	0	0.007413	0	0
NPY2R	4887	broad.mit.edu	37	4	156135319	156135319	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:156135319C>T	uc003ioq.2	+	2	723	c.228C>T	c.(226-228)ATC>ATT	p.I76I	NPY2R_uc003ior.2_Silent_p.I76I	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	76	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				ATGTGGTGATCAAATTCAAGA	0.453													18	13					0	0	0.006122	0	0
NPY2R	4887	broad.mit.edu	37	4	156135798	156135798	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:156135798C>T	uc003ioq.2	+	2	1202	c.707C>T	c.(706-708)TCA>TTA	p.S236L	NPY2R_uc003ior.2_Missense_Mutation_p.S236L	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	236	Helical; Name=5; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GGCATTATATCATTTTCCTAC	0.433													35	30					0	0	0.003271	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632249	156632249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:156632249G>A	uc003iov.2	+	7	1468	c.932G>A	c.(931-933)AGG>AAG	p.R311K	GUCY1A3_uc003iou.2_Missense_Mutation_p.R311K|GUCY1A3_uc010iqc.2_Missense_Mutation_p.R311K|GUCY1A3_uc003iow.2_Missense_Mutation_p.R311K|GUCY1A3_uc010iqd.2_Missense_Mutation_p.R310K|GUCY1A3_uc003iox.2_Missense_Mutation_p.R311K|GUCY1A3_uc003ioz.2_Missense_Mutation_p.R76K|GUCY1A3_uc003ioy.2_Missense_Mutation_p.R311K|GUCY1A3_uc010iqe.2_Missense_Mutation_p.R76K|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Missense_Mutation_p.R311K	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	311					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CTGATGAACAGGAGAGACTTT	0.383													6	26					0	0	0.001168	0	0
PDGFC	56034	broad.mit.edu	37	4	157732134	157732134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:157732134C>T	uc003iph.1	-	3	841	c.350G>A	c.(349-351)GGA>GAA	p.G117E	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_5'UTR|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	117	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TAATATAGTTCCATCACTGGG	0.353													8	13					0	0	0.000673	0	0
GLRB	2743	broad.mit.edu	37	4	158091583	158091583	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:158091583G>A	uc003ipj.2	+	10	1400	c.1198_splice	c.e10-1	p.V400_splice		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor						nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	TTTATTCTTAGGTTGGTGAGA	0.313													8	10					0	0	0.000673	0	0
GRIA2	2891	broad.mit.edu	37	4	158282238	158282238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:158282238G>A	uc003ipm.3	+	14	2827	c.2368G>A	c.(2368-2370)GAC>AAC	p.D790N	GRIA2_uc011cit.1_Intron|GRIA2_uc003ipl.3_Intron|GRIA2_uc003ipk.3_Intron|GRIA2_uc010iqh.1_RNA|GRIA2_uc011ciu.1_Missense_Mutation_p.D100N|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_Intron|GRIA2_uc011ciy.1_Intron|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	790	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	ATGGTGGTACGACAAAGGAGA	0.438													8	15					0	0	0.004482	0	0
FSTL5	56884	broad.mit.edu	37	4	162307361	162307361	+	Silent	SNP	C	T	T	rs35820116	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:162307361C>T	uc003iqh.2	-	16	2518	c.2082G>A	c.(2080-2082)ACG>ACA	p.T694T	FSTL5_uc003iqi.2_Silent_p.T693T|FSTL5_uc010iqv.2_Silent_p.T684T|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	694						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		ATGGAGTGCCCGTCACATCAC	0.478													13	31					0	0	0.001368	0	0
FSTL5	56884	broad.mit.edu	37	4	162459346	162459346	+	Silent	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:162459346A>T	uc003iqh.2	-	10	1720	c.1284T>A	c.(1282-1284)CTT>CTA	p.L428L	FSTL5_uc003iqi.2_Silent_p.L427L|FSTL5_uc010iqv.2_Silent_p.L427L	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	428						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CTTCCACAAAAAGAGAAGAGA	0.408													62	35					0	0	0.003610	0	0
NPY1R	4886	broad.mit.edu	37	4	164247320	164247320	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:164247320G>A	uc003iqm.1	-	2	653	c.387C>T	c.(385-387)TTC>TTT	p.F129F	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	129	Helical; Name=3; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GAACCAGAGAGAAAATGGACA	0.413													27	18					0	0	0.001512	0	0
TRIM61	391712	broad.mit.edu	37	4	165890966	165890966	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:165890966C>T	uc003iqw.2	-	3	800	c.189G>A	c.(187-189)AGG>AGA	p.R63R		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	63						intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		TTATAAATTTCCTTTCTGGAC	0.453													13	25					0	0	0.003163	0	0
TLL1	7092	broad.mit.edu	37	4	166929121	166929121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:166929121G>A	uc003irh.1	+	7	1485	c.838G>A	c.(838-840)GAG>AAG	p.E280K	TLL1_uc011cjn.1_Missense_Mutation_p.E280K|TLL1_uc011cjo.1_Missense_Mutation_p.E104K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	280	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TCTGAAGATGGAGCCTGGAGA	0.413													6	19					0	0	0.001984	0	0
SPOCK3	50859	broad.mit.edu	37	4	167675880	167675880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:167675880C>T	uc003iri.1	-	9	860	c.719G>A	c.(718-720)AGA>AAA	p.R240K	SPOCK3_uc011cjp.1_Missense_Mutation_p.G197E|SPOCK3_uc011cjq.1_Missense_Mutation_p.R249K|SPOCK3_uc011cjr.1_Missense_Mutation_p.R120K|SPOCK3_uc003irj.1_Missense_Mutation_p.R237K|SPOCK3_uc011cjs.1_Missense_Mutation_p.R189K|SPOCK3_uc011cjt.1_Missense_Mutation_p.R148K|SPOCK3_uc011cju.1_Missense_Mutation_p.R133K|SPOCK3_uc011cjv.1_Missense_Mutation_p.R142K|SPOCK3_uc003irk.3_Missense_Mutation_p.R237K	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	240					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		GGTATCGAATCCTAAAGGCAA	0.383													9	14					0	0	0.004482	0	0
SPOCK3	50859	broad.mit.edu	37	4	168155240	168155240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:168155240C>T	uc003iri.1	-	2	226	c.85G>A	c.(85-87)GCC>ACC	p.A29T	SPOCK3_uc011cjp.1_Missense_Mutation_p.A29T|SPOCK3_uc011cjq.1_Missense_Mutation_p.A41T|SPOCK3_uc011cjr.1_5'UTR|SPOCK3_uc003irj.1_Missense_Mutation_p.A29T|SPOCK3_uc011cjs.1_5'UTR|SPOCK3_uc011cjt.1_5'UTR|SPOCK3_uc011cju.1_5'UTR|SPOCK3_uc011cjv.1_Missense_Mutation_p.A29T|SPOCK3_uc003irk.3_Missense_Mutation_p.A29T|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	29					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		CGCCCCCCGGCTGCAGCCACC	0.577													21	22					0	0	0.001882	0	0
DDX60	55601	broad.mit.edu	37	4	169158566	169158566	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:169158566G>A	uc003irp.2	-	32	4574	c.4282C>T	c.(4282-4284)CAA>TAA	p.Q1428*		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1428							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTACCTTCTTGATCTAAATAG	0.299													13	5					0	0	0.004007	0	0
DDX60L	91351	broad.mit.edu	37	4	169315626	169315626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:169315626C>T	uc003irq.3	-	28	4021	c.3800G>A	c.(3799-3801)GGG>GAG	p.G1267E	DDX60L_uc003irr.1_Missense_Mutation_p.G1268E	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1267	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		CCTAATAAGCCCTTTTACAAA	0.328													8	12					0	0	0.004482	0	0
ADAM29	11086	broad.mit.edu	37	4	175897465	175897465	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:175897465G>A	uc003iuc.2	+	5	1459	c.789G>A	c.(787-789)AGG>AGA	p.R263R	ADAM29_uc003iud.2_Silent_p.R263R|ADAM29_uc010irr.2_Silent_p.R263R|ADAM29_uc011cki.1_Silent_p.R263R	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	263	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		ATGATGTAAGGAAATCTGTGC	0.403													31	27					0	0	0.001512	0	0
VEGFC	7424	broad.mit.edu	37	4	177608491	177608491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:177608491C>T	uc003ius.1	-	6	1425	c.995G>A	c.(994-996)CGA>CAA	p.R332Q		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	332	4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.|3.				angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		ATCAAATTCTCGGTTGGCCCC	0.468													74	61					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183713753	183713753	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:183713753C>T	uc003ivd.1	+	25	5965	c.5928C>T	c.(5926-5928)GTC>GTT	p.V1976V		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1976	Extracellular (Potential).|YD 11.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CAGCAGGAGTCCTAAAGACAG	0.413													99	65					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183714623	183714623	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:183714623G>A	uc003ivd.1	+	25	6835	c.6798G>A	c.(6796-6798)TCG>TCA	p.S2266S		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	2266	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ACAACCATTCGAGTTCAGAAA	0.413													19	16					0	0	0.001216	0	0
STOX2	56977	broad.mit.edu	37	4	184938369	184938369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:184938369C>T	uc003ivz.1	+	4	4148	c.2713C>T	c.(2713-2715)CCG>TCG	p.P905S	uc003iwb.1_5'Flank|STOX2_uc003iwa.1_3'UTR	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	905					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		CGCGGAGCCCCCGACAAATGA	0.527													3	12					0	0	0.004672	0	0
CCDC110	256309	broad.mit.edu	37	4	186380141	186380141	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:186380141A>G	uc003ixu.3	-	6	1676	c.1600T>C	c.(1600-1602)TTA>CTA	p.L534L	CCDC110_uc003ixv.3_Silent_p.L497L|CCDC110_uc011ckt.1_Silent_p.L534L	NM_152775	NP_689988	Q8TBZ0	CC110_HUMAN	coiled-coil domain containing 110 isoform a	534	Potential.					nucleus				central_nervous_system(1)	1		all_lung(41;1.3e-11)|Lung NSC(41;2.25e-11)|Melanoma(20;7.86e-05)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|Colorectal(36;0.0381)|all_hematologic(60;0.0749)		OV - Ovarian serous cystadenocarcinoma(60;1.13e-10)|BRCA - Breast invasive adenocarcinoma(30;8.01e-05)|GBM - Glioblastoma multiforme(59;0.00014)|STAD - Stomach adenocarcinoma(60;0.000777)|LUSC - Lung squamous cell carcinoma(40;0.00921)|COAD - Colon adenocarcinoma(29;0.0105)|READ - Rectum adenocarcinoma(43;0.164)		TGCTTCTCTAAAGAAAGTTGT	0.269													21	26					0	0	0.001882	0	0
SORBS2	8470	broad.mit.edu	37	4	186545288	186545288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:186545288G>A	uc003iyl.2	-	13	2141	c.1283C>T	c.(1282-1284)CCG>CTG	p.P428L	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Missense_Mutation_p.P528L|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Missense_Mutation_p.P332L|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Missense_Mutation_p.P542L|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	428						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		GCGAACCTCCGGGACGTAGGG	0.597													18	44					0	0	0.001523	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455134	187455134	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:187455134C>T	uc003izd.1	-	2	780	c.762G>A	c.(760-762)CTG>CTA	p.L254L		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	254	Helical; Name=6; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	CAATGAAGTTCAGAGGAGCCC	0.507													23	22					0	0	0.003330	0	0
TRIML2	205860	broad.mit.edu	37	4	189022258	189022258	+	Silent	SNP	C	T	T	rs141580546	by1000genomes	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:189022258C>T	uc003izl.2	-	3	318	c.282G>A	c.(280-282)GCG>GCA	p.A94A	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Silent_p.A144A|TRIML2_uc011clf.1_Silent_p.A144A	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	94	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		CAAGCTTGATCGCTTGATTCA	0.433													20	19					0	0	0.001216	0	0
TRIML2	205860	broad.mit.edu	37	4	189022305	189022305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr4:189022305C>T	uc003izl.2	-	3	271	c.235G>A	c.(235-237)GAA>AAA	p.E79K	TRIML2_uc003izj.1_5'UTR|TRIML2_uc003izk.1_5'UTR|TRIML2_uc011cle.1_Missense_Mutation_p.E129K|TRIML2_uc011clf.1_Missense_Mutation_p.E129K	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	79	Potential.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		GATATGCATTCCTGCTGTCTC	0.438													8	39					0	0	0.004482	0	0
SLC6A3	6531	broad.mit.edu	37	5	1416266	1416266	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:1416266G>A	uc003jck.2	-	7	1099	c.978C>T	c.(976-978)TTC>TTT	p.F326F		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	326	Helical; Name=6; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	TCAGCACCCCGAACCCCACGC	0.622													31	22					0	0	0.003755	0	0
SLC6A3	6531	broad.mit.edu	37	5	1432648	1432649	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:1432648_1432649CC>TT	uc003jck.2	-	4	704_705	c.583_584GG>AA	c.(583-585)GGT>AAT	p.G195N		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	195	Extracellular (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	ACTGGAGTCACCAGGATGGGCA	0.599													23	39					0	0	0.004672	0	0
SLC6A3	6531	broad.mit.edu	37	5	1443232	1443232	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:1443232C>T	uc003jck.2	-	2	202	c.81G>A	c.(79-81)AAG>AAA	p.K27K		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	27	Cytoplasmic (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	GCTCCACCTCCTTCGGGCCCA	0.637													62	50					0	0	0.003610	0	0
SEMA5A	9037	broad.mit.edu	37	5	9066614	9066614	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:9066614G>A	uc003jek.2	-	17	2930	c.2218C>T	c.(2218-2220)CCG>TCG	p.P740S		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	740	TSP type-1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						AGCAAATTCGGATCAGCCAGG	0.557													67	65					0	0	0.003610	0	0
CTNND2	1501	broad.mit.edu	37	5	11022918	11022918	+	Missense_Mutation	SNP	C	T	T	rs150013185		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:11022918C>T	uc003jfa.1	-	17	3107	c.2962G>A	c.(2962-2964)GAG>AAG	p.E988K	CTNND2_uc010itt.2_Missense_Mutation_p.E897K|CTNND2_uc011cmy.1_Missense_Mutation_p.E651K|CTNND2_uc011cmz.1_Missense_Mutation_p.E555K|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.E580K	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	988	ARM 9.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						ACCAACTTCTCGATGCCACCG	0.493													43	30					0	0	0.003610	0	0
DNAH5	1767	broad.mit.edu	37	5	13717604	13717604	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:13717604C>T	uc003jfd.2	-	73	12567	c.12525G>A	c.(12523-12525)GTG>GTA	p.V4175V	DNAH5_uc003jfc.2_Silent_p.V343V	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4175	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					ACCCAGAGCTCACGTCCAGCA	0.498									Kartagener_syndrome				12	16					0	0	0.001855	0	0
DNAH5	1767	broad.mit.edu	37	5	13763005	13763005	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:13763005G>A	uc003jfd.2	-	60	10149	c.10107C>T	c.(10105-10107)TTC>TTT	p.F3369F	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3369	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.F3369L(1)		ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTCTTTTGGGAATTGCTATG	0.368									Kartagener_syndrome				24	23					0	0	0.005443	0	0
DNAH5	1767	broad.mit.edu	37	5	13886082	13886082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:13886082C>T	uc003jfd.2	-	18	2776	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	912	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTGAACTTTCATTTTTGTAA	0.308									Kartagener_syndrome				18	47					0	0	0.001216	0	0
DNAH5	1767	broad.mit.edu	37	5	13901535	13901535	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:13901535C>T	uc003jfd.2	-	14	1920	c.1878G>A	c.(1876-1878)AAG>AAA	p.K626K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	626	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCCACAAAATCTTTCCAGCGA	0.498									Kartagener_syndrome				24	14					0	0	0.003954	0	0
CDH18	1016	broad.mit.edu	37	5	19473502	19473502	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:19473502G>A	uc003jgc.2	-	12	2583	c.2206C>T	c.(2206-2208)CAG>TAG	p.Q736*	CDH18_uc003jgd.2_Nonsense_Mutation_p.Q736*|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	736	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GCATAAGTCTGAAGAGAGTCA	0.473													22	31					0	0	0.002299	0	0
CDH18	1016	broad.mit.edu	37	5	19483537	19483537	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:19483537G>A	uc003jgc.2	-	11	2132	c.1755C>T	c.(1753-1755)ACC>ACT	p.T585T	CDH18_uc003jgd.2_Silent_p.T585T|CDH18_uc011cnm.1_Missense_Mutation_p.P549L	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	585	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AAACCCTGATGGTGAGGGTGC	0.537													18	19					0	0	0.004990	0	0
CDH12	1010	broad.mit.edu	37	5	21854813	21854813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:21854813C>T	uc010iuc.2	-	4	1071	c.613G>A	c.(613-615)GGA>AGA	p.G205R	CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Missense_Mutation_p.G205R	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	205	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TAAGGTTGTCCCTGAAGAATG	0.393										HNSCC(59;0.17)			10	13					0	0	0.006214	0	0
PRDM9	56979	broad.mit.edu	37	5	23522420	23522420	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:23522420G>A	uc003jgo.2	+	7	698	c.516G>A	c.(514-516)AGG>AGA	p.R172R		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	172					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TAGAACTCAGGAAGAAGGAGA	0.428										HNSCC(3;0.000094)			58	75					0	0	0.003610	0	0
CDH10	1008	broad.mit.edu	37	5	24488197	24488197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:24488197C>T	uc003jgr.1	-	12	2274	c.1942G>A	c.(1942-1944)GAA>AAA	p.E648K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	648	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CTGATATCTTCTTTTGACAAG	0.443										HNSCC(23;0.051)			21	39					0	0	0.002299	0	0
Unknown	0	broad.mit.edu	37	5	28927190	28927190	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:28927190G>A	uc003jgz.1	+	1		c.214G>A								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		TTTGAAGAAGGATCTCGTGAG	0.448													5	23					0	0	0.001368	0	0
CDH6	1004	broad.mit.edu	37	5	31317550	31317550	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:31317550G>A	uc003jhe.1	+	10	1907	c.1581G>A	c.(1579-1581)TTG>TTA	p.L527L	CDH6_uc003jhd.1_Silent_p.L527L	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	527	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						CGTTTTCCTTGGCCCCTGAAG	0.413													30	44					0	0	0.001512	0	0
PRLR	5618	broad.mit.edu	37	5	35084645	35084645	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:35084645G>A	uc003jjm.2	-	5	830	c.300C>T	c.(298-300)ATC>ATT	p.I100I	PRLR_uc003jjg.1_Silent_p.I100I|PRLR_uc003jjh.1_Silent_p.I100I|PRLR_uc003jji.1_Silent_p.I29I|PRLR_uc003jjj.1_Silent_p.I100I|PRLR_uc003jjk.1_Silent_p.I29I|PRLR_uc003jjl.3_Intron|PRLR_uc010iuw.1_Silent_p.I29I	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	100	Fibronectin type-III 1.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	TGACCATCATGATGTATGTCC	0.493													42	85					0	0	0.002522	0	0
SPEF2	79925	broad.mit.edu	37	5	35771817	35771817	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:35771817A>C	uc003jjo.2	+	27	4019	c.3908A>C	c.(3907-3909)AAG>ACG	p.K1303T	SPEF2_uc003jjp.1_Missense_Mutation_p.K789T|SPEF2_uc003jjr.2_5'Flank	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1303					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAAGTCAAAAAGGAGCCACCC	0.408													12	13					0	0	0.001368	0	0
UGT3A1	133688	broad.mit.edu	37	5	35954490	35954490	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:35954490G>A	uc003jjv.1	-	7	1543	c.1386C>T	c.(1384-1386)ATC>ATT	p.I462I	UGT3A1_uc003jjw.1_RNA	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	462	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAGTCTGGAGGATGTGGTCGA	0.612													18	16					0	0	0.004990	0	0
RANBP3L	202151	broad.mit.edu	37	5	36265061	36265061	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:36265061C>T	uc003jkh.2	-	6	973	c.480G>A	c.(478-480)AAG>AAA	p.K160K	RANBP3L_uc011cow.1_Silent_p.K185K	NM_145000	NP_659437	Q86VV4	RNB3L_HUMAN	RAN binding protein 3-like isoform 2	160					intracellular transport					ovary(1)	1	all_lung(31;4.52e-05)		Epithelial(62;0.0543)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.149)|Colorectal(62;0.202)			GCTTTCTCACCTTATTATTTG	0.418													24	72					0	0	0.003330	0	0
C5orf42	65250	broad.mit.edu	37	5	37154076	37154076	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:37154076G>A	uc011cpa.1	-	41	8208	c.7977C>T	c.(7975-7977)TTC>TTT	p.F2659F	C5orf42_uc003jkp.1_RNA|C5orf42_uc011coy.1_Silent_p.F1177F|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Silent_p.F1752F	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2659										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			CTTTGAATCGGAACTCTGGTT	0.383													31	31					0	0	0.002445	0	0
NUP155	9631	broad.mit.edu	37	5	37337949	37337949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:37337949G>A	uc003jku.1	-	12	1436	c.1318C>T	c.(1318-1320)CCT>TCT	p.P440S	NUP155_uc003jkt.1_Missense_Mutation_p.P381S|NUP155_uc010iuz.1_Missense_Mutation_p.P440S	NM_153485	NP_705618	O75694	NU155_HUMAN	nucleoporin 155kDa isoform 1	440					carbohydrate metabolic process|glucose transport|mRNA transport|nucleocytoplasmic transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore|transporter activity			ovary(1)	1	all_lung(31;0.000137)		COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTTTGGAAAGGAAAAGTATCA	0.289													32	39					0	0	0.004289	0	0
EGFLAM	133584	broad.mit.edu	37	5	38352301	38352301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:38352301C>T	uc003jlc.1	+	5	737	c.413C>T	c.(412-414)TCC>TTC	p.S138F	EGFLAM_uc003jlb.1_Missense_Mutation_p.S138F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	138						cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					CACCTAGATTCCTGCCTGCCT	0.562													23	68					0	0	0.004656	0	0
OSMR	9180	broad.mit.edu	37	5	38904469	38904469	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:38904469C>T	uc003jln.1	+	9	1516	c.1149C>T	c.(1147-1149)ATC>ATT	p.I383I		NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	383	Fibronectin type-III 1.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					ATGTTTCCATCAAGGTGAACG	0.398													19	23					0	0	0.006122	0	0
C9	735	broad.mit.edu	37	5	39315978	39315978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:39315978C>T	uc003jlv.3	-	6	858	c.769G>A	c.(769-771)GAA>AAA	p.E257K		NM_001737	NP_001728	P02748	CO9_HUMAN	complement component 9 precursor	257	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis|hemolysis by symbiont of host erythrocytes	extracellular region|membrane attack complex					0	all_lung(31;0.000197)	all_neural(839;7.57e-10)|Lung NSC(810;2.62e-08)|Ovarian(839;0.00384)|Breast(839;0.0184)|Myeloproliferative disorder(839;0.0511)	Epithelial(62;0.158)			GAGGCTGTTTCCTCACAACAT	0.313													20	46					0	0	0.002299	0	0
C7	730	broad.mit.edu	37	5	40959697	40959697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:40959697G>A	uc003jmh.2	+	12	1750	c.1636G>A	c.(1636-1638)GAA>AAA	p.E546K	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	546	TSP type-1 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CACACAATGCGAAGATGAGGA	0.522													4	7					0	0	0.000248	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41000372	41000372	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41000372G>A	uc003jmj.3	-	39	4922	c.4432C>T	c.(4432-4434)CAG>TAG	p.Q1478*	HEATR7B2_uc003jmi.3_Nonsense_Mutation_p.Q1033*	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1478							binding			ovary(6)|central_nervous_system(2)	8						GGTAGATCCTGATCAAGGAGA	0.498													22	31					0	0	0.001523	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41009507	41009507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41009507C>T	uc003jmj.3	-	32	3785	c.3295G>A	c.(3295-3297)GAC>AAC	p.D1099N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D654N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1099							binding			ovary(6)|central_nervous_system(2)	8						GTCTTTGTGTCCCTAGGGTGG	0.463													30	68					0	0	0.002445	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41012771	41012771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41012771C>T	uc003jmj.3	-	30	3539	c.3049G>A	c.(3049-3051)GAG>AAG	p.E1017K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E572K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1017							binding			ovary(6)|central_nervous_system(2)	8						TTGAGGCTCTCCAGACCGTCC	0.468													10	32					0	0	0.000673	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41054920	41054920	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41054920G>A	uc003jmj.3	-	11	1546	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	352							binding			ovary(6)|central_nervous_system(2)	8						CTATTGAAATGATGTGATCCC	0.373													40	28					0	0	0.001951	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41061705	41061705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41061705C>T	uc003jmj.3	-	6	1072	c.582G>A	c.(580-582)ATG>ATA	p.M194I		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	194							binding			ovary(6)|central_nervous_system(2)	8						CCCACTTCTCCATTATATACC	0.483													48	92					0	0	0.003610	0	0
C6	729	broad.mit.edu	37	5	41159246	41159246	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41159246C>T	uc003jmk.2	-	12	2004	c.1794G>A	c.(1792-1794)GGG>GGA	p.G598G	C6_uc003jml.1_Silent_p.G598G	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	598	TSP type-1 3.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				CACAGCGTTTCCCTCCTCGTT	0.498													46	32					0	0	0.003610	0	0
C6	729	broad.mit.edu	37	5	41176647	41176647	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41176647G>A	uc003jmk.2	-	8	1308	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F	C6_uc003jml.1_Silent_p.F366F	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	366	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AGCCAGAGGTGAAGTAATGAG	0.423													17	16					0	0	0.001216	0	0
C6	729	broad.mit.edu	37	5	41176678	41176678	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:41176678C>T	uc003jmk.2	-	8	1277	c.1067G>A	c.(1066-1068)CGA>CAA	p.R356Q	C6_uc003jml.1_Missense_Mutation_p.R356Q	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	356	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				ATCGAATATTCGGCTGTACAA	0.423													12	23					0	0	0.002450	0	0
HCN1	348980	broad.mit.edu	37	5	45645412	45645412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:45645412C>T	uc003jok.2	-	2	749	c.724G>A	c.(724-726)GGA>AGA	p.G242R		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	242	Extracellular (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						GAATCCATTCCTTTTTCTACA	0.373													11	10					0	0	0.000978	0	0
ITGA1	3672	broad.mit.edu	37	5	52160651	52160651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:52160651C>T	uc003jou.2	+	4	402	c.350C>T	c.(349-351)TCA>TTA	p.S117L	ITGA1_uc003jov.2_RNA	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	117	FG-GAP 2.|Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				ACATTTGGATCAACTTTAGTC	0.323													12	14					0	0	0.001368	0	0
RGS7BP	401190	broad.mit.edu	37	5	63894214	63894214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:63894214C>T	uc003jtj.2	+	5	634	c.634C>T	c.(634-636)CTT>TTT	p.L212F	RGS7BP_uc011cqu.1_Missense_Mutation_p.L79F	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	212					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		AATGAAAAACCTTTTAAGCAA	0.328													25	46					0	0	0.003330	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64595871	64595871	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:64595871C>T	uc003jtp.2	-	10	2125	c.1311G>A	c.(1309-1311)GCG>GCA	p.A437A	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.A58A	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	437	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GATTGGTATTCGCAGTAATGT	0.413													30	29					0	0	0.002096	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64747382	64747382	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:64747382G>A	uc003jtp.2	-	7	1807	c.993C>T	c.(991-993)TCC>TCT	p.S331S	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_5'UTR	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	331	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		GGGAGAGAATGGATTTCTGCC	0.418													15	31					0	0	0.003163	0	0
MAST4	375449	broad.mit.edu	37	5	66396273	66396273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:66396273C>T	uc003jut.1	+	7	424	c.356C>T	c.(355-357)TCC>TTC	p.S119F	MAST4_uc003jus.2_Missense_Mutation_p.S119F|MAST4_uc003juu.1_Missense_Mutation_p.S129F|MAST4_uc011cra.1_Missense_Mutation_p.S102F|MAST4_uc010ixa.2_RNA|MAST4_uc003juv.2_Missense_Mutation_p.S114F|MAST4_uc003juw.2_Missense_Mutation_p.S114F	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	311						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		TCATCCTGTTCCTCCCAGGAG	0.418													12	17					0	0	0.000978	0	0
RAD17	5884	broad.mit.edu	37	5	68684932	68684932	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:68684932C>T	uc003jwo.2	+	9	1061	c.999C>T	c.(997-999)ATC>ATT	p.I333I	RAD17_uc003jwg.2_Silent_p.I322I|RAD17_uc003jwh.2_Silent_p.I322I|RAD17_uc003jwi.2_Silent_p.I322I|RAD17_uc003jwj.2_Silent_p.I322I|RAD17_uc003jwk.2_Silent_p.I322I|RAD17_uc003jwl.2_Silent_p.I322I|RAD17_uc003jwm.2_Silent_p.I157I|RAD17_uc003jwn.2_Silent_p.I236I	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	333					cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		CTGGTGATATCAGAAGTGCAA	0.333								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					16	14					0	0	0.006122	0	0
NAIP	4671	broad.mit.edu	37	5	70308571	70308571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:70308571G>A	uc003kar.1	-	4	890	c.172C>T	c.(172-174)CGC>TGC	p.R58C	NAIP_uc003kat.1_Intron|NAIP_uc011crs.1_Missense_Mutation_p.R58C|NAIP_uc003kas.1_Intron	NM_004536	NP_004527	Q13075	BIRC1_HUMAN	NLR family, apoptosis inhibitory protein isoform	58					anti-apoptosis|apoptosis|nervous system development	basolateral plasma membrane|cytoplasm	caspase inhibitor activity|metal ion binding|nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(1)	1		Lung NSC(167;4.15e-05)|Prostate(74;0.00996)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;3.04e-60)|Epithelial(20;7.09e-58)|all cancers(19;1.13e-53)|Lung(70;0.0174)		GCTTCACTGCGCATTTGAGAG	0.483													32	131					0	0	0.004289	0	0
MAP1B	4131	broad.mit.edu	37	5	71496137	71496137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:71496137G>A	uc003kbw.3	+	5	7196	c.6955G>A	c.(6955-6957)GAG>AAG	p.E2319K	MAP1B_uc010iyw.1_Missense_Mutation_p.E2336K|MAP1B_uc010iyx.1_Missense_Mutation_p.E2193K|MAP1B_uc010iyy.1_Missense_Mutation_p.E2193K	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2319						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GAAAGACAAGGAGACCAAGAA	0.517													25	28					0	0	0.002780	0	0
FCHO2	115548	broad.mit.edu	37	5	72348266	72348266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:72348266C>T	uc003kcl.2	+	13	1221	c.1105C>T	c.(1105-1107)CAC>TAC	p.H369Y	FCHO2_uc011csl.1_Missense_Mutation_p.H336Y|FCHO2_uc010izb.2_5'UTR	NM_138782	NP_620137	Q0JRZ9	FCHO2_HUMAN	FCH domain only 2 isoform a	369										ovary(1)	1		Lung NSC(167;0.0465)|Ovarian(174;0.0908)|Prostate(461;0.165)		OV - Ovarian serous cystadenocarcinoma(47;4.6e-53)		TAACTCACATCACACAATGGC	0.353													3	2					0	0	0.004672	0	0
SV2C	22987	broad.mit.edu	37	5	75594628	75594628	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:75594628G>A	uc003kei.1	+	10	1646	c.1512G>A	c.(1510-1512)GGG>GGA	p.G504G		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	504	Extracellular (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		GATTCATAGGGGTCAAGTTCA	0.373													11	43					0	0	0.001368	0	0
CMYA5	202333	broad.mit.edu	37	5	79030492	79030492	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:79030492C>T	uc003kgc.2	+	2	5976	c.5904C>T	c.(5902-5904)TCC>TCT	p.S1968S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1968						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TTGATACTTCCAGTGGTAATA	0.413													9	31					0	0	0.006214	0	0
SERINC5	256987	broad.mit.edu	37	5	79498762	79498762	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:79498762G>A	uc003kgj.2	-	2	267	c.138C>T	c.(136-138)GTC>GTT	p.V46V	SERINC5_uc003kgk.2_Silent_p.V46V|SERINC5_uc003kgl.2_RNA|SERINC5_uc003kgm.2_Silent_p.V46V|SERINC5_uc011ctj.1_Silent_p.V46V	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1	46	Helical; (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		AGAGGACGACGACCAGAATGA	0.537													5	9					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	5	79655043	79655043	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:79655043A>T	uc003kgo.2	-	1	865	c.702T>A	c.(700-702)AAT>AAA	p.N234K						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		TGGGTCCAAAATTTGAAGACT	0.308													38	41					0	0	0.002222	0	0
RASGRF2	5924	broad.mit.edu	37	5	80503116	80503116	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:80503116G>C	uc003kha.1	+	21	3019	c.3019G>C	c.(3019-3021)GCA>CCA	p.A1007P	RNU5E_uc011cto.1_Intron|RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	1007	Ras-GEF.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		CATGGAGCTGGCAGAACAGAT	0.572													9	33					0	0	0.006214	0	0
VCAN	1462	broad.mit.edu	37	5	82836397	82836398	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:82836397_82836398GG>AA	uc003kii.3	+	8	7931_7932	c.7575_7576GG>AA	c.(7573-7578)AGGGAA>AGAAAA	p.E2526K	VCAN_uc003kij.3_Missense_Mutation_p.E1539K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E1190K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2526	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ACCGTTTCAGGGAATTCGAGGA	0.401													9	12					0	0	0.004672	0	0
EDIL3	10085	broad.mit.edu	37	5	83433158	83433158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:83433158C>T	uc003kio.1	-	5	789	c.370G>A	c.(370-372)GAA>AAA	p.E124K	EDIL3_uc003kip.1_Missense_Mutation_p.E114K	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	124	EGF-like 3.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GGCTCAACTTCGCATTCATTT	0.333													15	25					0	0	0.002450	0	0
LYSMD3	116068	broad.mit.edu	37	5	89815203	89815204	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:89815203_89815204GG>AA	uc003kjr.2	-	3	501_502	c.353_354CC>TT	c.(352-354)ACC>ATT	p.T118I	LYSMD3_uc010jaz.1_Intron|LYSMD3_uc003kjs.1_Nonsense_Mutation_p.R99*	NM_198273	NP_938014	Q7Z3D4	LYSM3_HUMAN	LysM, putative peptidoglycan-binding, domain	118	Extracellular (Potential).				cell wall macromolecule catabolic process	integral to membrane					0		all_cancers(142;5.03e-09)|all_epithelial(76;1.23e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;1.94e-31)|Epithelial(54;5.22e-26)|all cancers(79;2.42e-22)		AAAGTGTTTCGGTCAAGGAACT	0.386													16	17					0	0	0.004672	0	0
GPR98	84059	broad.mit.edu	37	5	90012448	90012448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:90012448G>A	uc003kju.2	+	43	9445	c.9349G>A	c.(9349-9351)GTT>ATT	p.V3117I	GPR98_uc003kjt.2_Missense_Mutation_p.V823I|GPR98_uc003kjv.2_Missense_Mutation_p.V717I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3117	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AACAGTGACAGTTCAGTTCAT	0.413													15	30					0	0	0.003163	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101748833	101748833	+	Missense_Mutation	SNP	C	T	T	rs141543083		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:101748833C>T	uc003knn.2	-	9	1659	c.1487G>A	c.(1486-1488)GGA>GAA	p.G496E	SLCO6A1_uc003kno.2_Missense_Mutation_p.G243E|SLCO6A1_uc003knp.2_Missense_Mutation_p.G496E|SLCO6A1_uc003knq.2_Missense_Mutation_p.G434E	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	496	Extracellular (Potential).|Kazal-like.					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CGTGAGGTTTCCCAACTTCCC	0.318													22	15					0	0	0.001882	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834348	101834348	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:101834348C>T	uc003knn.2	-	1	373	c.201G>A	c.(199-201)AGG>AGA	p.R67R	SLCO6A1_uc003kno.2_Silent_p.R67R|SLCO6A1_uc003knp.2_Silent_p.R67R|SLCO6A1_uc003knq.2_Silent_p.R67R	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	67	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TGGCTTTTTTCCTTTTTCGGA	0.537													73	72					0	0	0.003610	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102509584	102509584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:102509584C>T	uc003kod.3	+	21	2956	c.2437C>T	c.(2437-2439)CCT>TCT	p.P813S	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.P813S|PPIP5K2_uc003kof.2_Missense_Mutation_p.P114S	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	813					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						TGTTCTGTCTCCTGAACGTCA	0.323													16	12					0	0	0.004990	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111519789	111519789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:111519789C>T	uc003kpv.1	-	18	1820	c.1546G>A	c.(1546-1548)GAA>AAA	p.E516K	EPB41L4A_uc003kpp.1_Missense_Mutation_p.E143K	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	516						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		AATACAGCTTCCCACTGAGGC	0.448													14	16					0	0	0.003163	0	0
SRP19	6728	broad.mit.edu	37	5	112228530	112228530	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:112228530G>A	uc011cvv.1	+	4	1524	c.1269G>A	c.(1267-1269)GGG>GGA	p.G423G	SRP19_uc011cvu.1_Silent_p.G408G|REEP5_uc011cvw.1_Intron|REEP5_uc003kqe.1_Intron|REEP5_uc011cvx.1_Intron|REEP5_uc011cvy.1_Intron|REEP5_uc011cvz.1_Intron			P09132	SRP19_HUMAN	SubName: Full=Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2;	Error:Variant_position_missing_in_P09132_after_alignment					response to drug|SRP-dependent cotranslational protein targeting to membrane	cytosol|mitochondrion|nucleolus|signal recognition particle, endoplasmic reticulum targeting	7S RNA binding				0		all_cancers(142;0.00328)|all_epithelial(76;6.39e-05)|Prostate(80;0.00174)|Colorectal(10;0.00372)|Ovarian(225;0.156)		Epithelial(69;1.7e-09)|OV - Ovarian serous cystadenocarcinoma(64;1.17e-08)|all cancers(49;3.96e-07)|Colorectal(14;0.0056)|COAD - Colon adenocarcinoma(37;0.0104)		AAAGAAATGGGGAATCCGAGA	0.502													4	13					0	0	0.001168	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786241	121786241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:121786241C>T	uc003ksw.1	+	10	1905	c.1699C>T	c.(1699-1701)CCT>TCT	p.P567S	SNCAIP_uc011cwl.1_Missense_Mutation_p.P125S|SNCAIP_uc003ksx.1_Missense_Mutation_p.P614S|SNCAIP_uc003ksy.1_Missense_Mutation_p.P201S|SNCAIP_uc003ksz.1_Missense_Mutation_p.P201S|SNCAIP_uc010jcu.2_Missense_Mutation_p.P163S|SNCAIP_uc011cwm.1_Missense_Mutation_p.P201S|SNCAIP_uc003kta.1_Missense_Mutation_p.P199S|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.P261S|SNCAIP_uc010jcx.1_Missense_Mutation_p.P507S|uc003ktb.1_Splice_Site|SNCAIP_uc003ktc.1_Missense_Mutation_p.P83S	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	567					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		ACCATCCTCACCTGCCTCCAG	0.438													21	91					0	0	0.002780	0	0
CEP120	153241	broad.mit.edu	37	5	122725653	122725653	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:122725653A>G	uc003ktk.2	-	9	1302	c.1220T>C	c.(1219-1221)TTA>TCA	p.L407S	CEP120_uc011cwq.1_Missense_Mutation_p.L216S|CEP120_uc010jcz.1_Missense_Mutation_p.L381S	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	407						centrosome				ovary(1)	1						ATCATACTGTAAACTTTCCAC	0.383													7	26					0	0	0.006214	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129037238	129037238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:129037238G>A	uc003kvb.1	+	20	3094	c.3094G>A	c.(3094-3096)GAG>AAG	p.E1032K	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1032	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		CCAGCGCTGTGAGGGCCAGGA	0.582													29	24					0	0	0.002836	0	0
PDLIM4	8572	broad.mit.edu	37	5	131607089	131607089	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:131607089C>T	uc003kwn.2	+	5	677	c.600C>T	c.(598-600)CCC>CCT	p.P200P	uc003kwm.3_Intron|PDLIM4_uc003kwp.2_Silent_p.P200P|PDLIM4_uc003kwo.2_Silent_p.P200P	NM_003687	NP_003678	P50479	PDLI4_HUMAN	PDZ and LIM domain 4 isoform 1	200							protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAGCCGAGCCCGTGGCCGCGG	0.701													13	12					0	0	0.003163	0	0
TRPC7	57113	broad.mit.edu	37	5	135602050	135602050	+	Silent	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:135602050T>C	uc003lbn.1	-	4	1203	c.1200A>G	c.(1198-1200)TTA>TTG	p.L400L	TRPC7_uc010jef.1_Silent_p.L337L|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.L331L|TRPC7_uc010jei.1_Silent_p.L276L|TRPC7_uc010jej.1_Intron	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	401	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCACAACTAATAATCCCAAGA	0.408													16	17					0	0	0.003163	0	0
FAM53C	51307	broad.mit.edu	37	5	137681191	137681191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:137681191C>T	uc003lcv.2	+	4	1284	c.814C>T	c.(814-816)CGC>TGC	p.R272C	FAM53C_uc003lcw.2_Missense_Mutation_p.R272C|FAM53C_uc011cyq.1_RNA|FAM53C_uc011cyr.1_Silent_p.A87A	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	272										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCCCCGAAGCCGCTCACAGCC	0.657													40	34					0	0	0.006999	0	0
KDM3B	51780	broad.mit.edu	37	5	137727227	137727227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:137727227C>T	uc003lcy.1	+	8	2106	c.1906C>T	c.(1906-1908)CCT>TCT	p.P636S	KDM3B_uc010jew.1_Missense_Mutation_p.P292S|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	636					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GCCTTCTAATCCTTTCCTGGC	0.488													21	52					0	0	0.002780	0	0
PSD2	84249	broad.mit.edu	37	5	139189270	139189270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:139189270C>T	uc003leu.1	+	2	450	c.245C>T	c.(244-246)GCC>GTC	p.A82V		NM_032289	NP_115665	Q9BQI7	PSD2_HUMAN	pleckstrin and Sec7 domain containing 2	82					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGGCCTAGCCCTGGGGCCA	0.627													45	33					0	0	0.002852	0	0
NRG2	9542	broad.mit.edu	37	5	139231229	139231229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:139231229C>T	uc003lex.1	-	9	1957	c.1732G>A	c.(1732-1734)GAT>AAT	p.D578N	NRG2_uc003lev.1_Missense_Mutation_p.D586N|NRG2_uc003lew.1_Missense_Mutation_p.D580N|NRG2_uc003ley.1_Missense_Mutation_p.D572N	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	578	Cytoplasmic (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCACGGAATCGTGATAGGGT	0.657													42	32					0	0	0.003610	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167178	140167178	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140167178C>T	uc003lhb.2	+	1	1303	c.1303C>T	c.(1303-1305)CTG>TTG	p.L435L	PCDHA1_uc003lha.2_Silent_p.L435L|PCDHA1_uc003lgz.2_Silent_p.L435L	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	435	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGCCTTCGCTGTGGGCCAC	0.627													41	41					0	0	0.001951	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181907	140181907	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140181907C>T	uc003lhf.2	+	1	1125	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.S375S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	375	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCAGCGTGTCCGACCGCGACT	0.483													35	39					0	0	0.002445	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250188	140250188	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140250188C>T	uc003lia.2	+	1	2358	c.1500C>T	c.(1498-1500)GAC>GAT	p.D500D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.D500D	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	500	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTTGGGCGACCGCGCGCTGT	0.682													64	70					0	0	0.003610	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250436	140250436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140250436C>T	uc003lia.2	+	1	2606	c.1748C>T	c.(1747-1749)TCG>TTG	p.S583L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.S583L	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	583	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTACCGCGGTCGGTGGGTGCG	0.667													57	70					0	0	0.003610	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140347604	140347604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140347604C>T	uc003lii.2	+	1	1493	c.1253C>T	c.(1252-1254)TCC>TTC	p.S418F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.S418F	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	418	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTGGAAACTCCTATACACTG	0.582													48	45					0	0	0.003610	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431116	140431116	+	Silent	SNP	C	T	T	rs75402992		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140431116C>T	uc003lik.1	+	1	138	c.61C>T	c.(61-63)CTG>TTG	p.L21L		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	21					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCTCATTTTTCTGTGCATATC	0.512													19	23					0	0	0.001216	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432760	140432760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140432760G>A	uc003lik.1	+	1	1782	c.1705G>A	c.(1705-1707)GGC>AGC	p.G569S		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	569	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTGCAGAACGGCACCTTGCC	0.522													13	55					0	0	0.001368	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474384	140474384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140474384G>A	uc003lil.2	+	1	148	c.10G>A	c.(10-12)GGA>AGA	p.G4R	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	4					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AATGGAGGCCGGAGAGGGGAA	0.527													25	29					0	0	0.003330	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517377	140517377	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140517377C>T	uc003liq.2	+	1	2578	c.2361C>T	c.(2359-2361)GCC>GCT	p.A787A		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	787	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAACTGCTGCCTTCCGGAATA	0.468													67	48					0	0	0.003610	0	0
PCDHB6	56130	broad.mit.edu	37	5	140530117	140530117	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140530117G>A	uc003lir.2	+	1	279	c.279G>A	c.(277-279)GAG>GAA	p.E93E	PCDHB6_uc011dah.1_5'UTR	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	93	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCGGGAGGAGCTGTGTGGCT	0.488													25	54					0	0	0.004656	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568504	140568504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140568504C>T	uc003liw.1	+	3	1613	c.1613C>T	c.(1612-1614)TCC>TTC	p.S538F		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	538	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GACCGCGGCTCCCCGGCTTTG	0.672													29	58					0	0	0.006320	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603128	140603128	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140603128C>T	uc003ljb.2	+	1	51	c.51C>T	c.(49-51)TTC>TTT	p.F17F	PCDHB14_uc011dal.1_Intron	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	17					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCTAATATTCCTTGTTTTGC	0.458													14	17					0	0	0.001855	0	0
PCDHB14	56122	broad.mit.edu	37	5	140603809	140603809	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140603809G>A	uc003ljb.2	+	1	732	c.732G>A	c.(730-732)CAG>CAA	p.Q244Q	PCDHB14_uc011dal.1_Silent_p.Q91Q	NM_018934	NP_061757	Q9Y5E9	PCDBE_HUMAN	protocadherin beta 14 precursor	244	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTTTCCTCAGAGTCTCTATG	0.507													40	33					0	0	0.002222	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140719102	140719102	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140719102G>A	uc003ljk.1	+	1	749	c.564G>A	c.(562-564)GGG>GGA	p.G188G	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Silent_p.G188G	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	188	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCTGATGGGAACAAGTACC	0.577													43	26					0	0	0.002852	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140725157	140725157	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140725157C>T	uc003ljm.1	+	1	1557	c.1557C>T	c.(1555-1557)TCC>TCT	p.S519S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.S279S|PCDHGA3_uc011dap.1_Silent_p.S519S	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	519	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCTGAGATCCTTCGACTACG	0.557													54	44					0	0	0.003610	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140736244	140736244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140736244G>A	uc003ljq.1	+	1	1477	c.1477G>A	c.(1477-1479)GAA>AAA	p.E493K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.E493K	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	493	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCCCTGGCCGAAGACACCTT	0.493													40	88					0	0	0.005524	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140783640	140783640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140783640G>A	uc003lkh.1	+	1	1121	c.1121G>A	c.(1120-1122)CGA>CAA	p.R374Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.R374Q	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	374	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCATGACCGAGACTCCGGG	0.408													20	19					0	0	0.001216	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140784165	140784165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140784165G>A	uc003lkh.1	+	1	1646	c.1646G>A	c.(1645-1647)AGA>AAA	p.R549K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.R549K	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	549	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGTCATTGAGACTGTTTGTT	0.517													76	48					0	0	0.003610	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140794693	140794693	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:140794693C>T	uc003lkl.1	+	1	1951	c.1951C>T	c.(1951-1953)CAG>TAG	p.Q651*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Nonsense_Mutation_p.Q651*|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	651	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTGGCCGTCCAGGACCACGG	0.706													29	63					0	0	0.001512	0	0
GRXCR2	643226	broad.mit.edu	37	5	145252455	145252455	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:145252455G>A	uc003lns.1	-	1	77	c.77C>T	c.(76-78)TCC>TTC	p.S26F		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	26											0						ACCGCTGTAGGAGGAGGAGAT	0.473													32	43					0	0	0.002836	0	0
SH3RF2	153769	broad.mit.edu	37	5	145442103	145442103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:145442103G>A	uc003lnt.2	+	10	2267	c.2029G>A	c.(2029-2031)GAA>AAA	p.E677K	SH3RF2_uc011dbl.1_Missense_Mutation_p.E677K|SH3RF2_uc003lnu.2_Missense_Mutation_p.E168K|SH3RF2_uc011dbn.1_Missense_Mutation_p.E168K|SH3RF2_uc011dbo.1_Missense_Mutation_p.E134K	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	677							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCCCAGCCTGAAGCAGCGTC	0.587													24	19					0	0	0.003330	0	0
SPINK7	84651	broad.mit.edu	37	5	147692067	147692067	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:147692067C>T	uc003lpd.2	+	1	78	c.21C>T	c.(19-21)CTC>CTT	p.L7L	uc003lpb.1_Intron	NM_032566	NP_115955	P58062	ISK7_HUMAN	serine peptidase inhibitor, Kazal type 7	7						extracellular region	protein binding|serine-type endopeptidase inhibitor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGGGGGTCTCCTTCTGCTCT	0.458													18	27					0	0	0.001216	0	0
PDE6A	5145	broad.mit.edu	37	5	149278955	149278955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:149278955C>T	uc003lrg.3	-	9	1366	c.1246G>A	c.(1246-1248)GAT>AAT	p.D416N		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	416	GAF 2.				cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			AGCGTCTCATCCATTTCATCA	0.468													30	26					0	0	0.001786	0	0
CSF1R	1436	broad.mit.edu	37	5	149456918	149456918	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:149456918G>A	uc003lrl.2	-	5	1005	c.810C>T	c.(808-810)TTC>TTT	p.F270F	CSF1R_uc011dcd.1_Silent_p.F122F|CSF1R_uc010jhc.2_RNA|CSF1R_uc003lrm.2_Silent_p.F270F|CSF1R_uc011dce.1_Silent_p.F270F|CSF1R_uc011dcf.1_Silent_p.F270F	NM_005211	NP_005202	P07333	CSF1R_HUMAN	colony stimulating factor 1 receptor precursor	270	Extracellular (Potential).|Ig-like C2-type 3.				cell proliferation|multicellular organismal development|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane|receptor complex	ATP binding|cytokine binding|macrophage colony-stimulating factor receptor activity|protein homodimerization activity			haematopoietic_and_lymphoid_tissue(38)|lung(6)|central_nervous_system(3)|liver(3)|breast(2)|endometrium(1)|ovary(1)	54			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)		Imatinib(DB00619)|Sunitinib(DB01268)	CGGCATGTTGGAAATCTACTT	0.522													41	42					0	0	0.007835	0	0
DCTN4	51164	broad.mit.edu	37	5	150138482	150138482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:150138482G>A	uc003lsv.2	-	1	176	c.74C>T	c.(73-75)TCG>TTG	p.S25L	DCTN4_uc003lsu.2_5'Flank|DCTN4_uc010jhi.2_Missense_Mutation_p.S25L|DCTN4_uc010jhj.2_RNA|DCTN4_uc011dck.1_5'Flank	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	25						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTAGAGTTGCGAGAGCGGGGC	0.587													39	42					0	0	0.005524	0	0
DCTN4	51164	broad.mit.edu	37	5	150138553	150138553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:150138553C>T	uc003lsv.2	-	1	105	c.3G>A	c.(1-3)ATG>ATA	p.M1I	DCTN4_uc003lsu.2_5'Flank|DCTN4_uc010jhi.2_Missense_Mutation_p.M1I|DCTN4_uc010jhj.2_RNA|DCTN4_uc011dck.1_5'Flank	NM_016221	NP_057305	Q9UJW0	DCTN4_HUMAN	dynactin 4 (p62) isoform b	1						centrosome|nucleus	protein N-terminus binding			central_nervous_system(1)	1		Medulloblastoma(196;0.167)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCAAGGACGCCATCTTGGGGA	0.602													8	36					0	0	0.003080	0	0
SLC36A3	285641	broad.mit.edu	37	5	150664188	150664188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:150664188C>T	uc003ltw.2	-	7	1212	c.793G>A	c.(793-795)GAA>AAA	p.E265K	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Missense_Mutation_p.E250K|SLC36A3_uc003ltx.2_Missense_Mutation_p.E306K	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	265	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCGACGCCTTCAAATGTGAAG	0.468													12	16					0	0	0.001855	0	0
GRIA1	2890	broad.mit.edu	37	5	153143996	153143996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:153143996C>T	uc003lva.3	+	12	2191	c.1826C>T	c.(1825-1827)TCC>TTC	p.S609F	GRIA1_uc003luy.3_Missense_Mutation_p.S609F|GRIA1_uc003luz.3_Missense_Mutation_p.S514F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.S529F|GRIA1_uc011dcx.1_Missense_Mutation_p.S540F|GRIA1_uc011dcy.1_Missense_Mutation_p.S619F|GRIA1_uc011dcz.1_Missense_Mutation_p.S619F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	609	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GCCTGCAGGTCCCTGTCTGGT	0.587													12	26					0	0	0.001368	0	0
ITK	3702	broad.mit.edu	37	5	156644894	156644894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:156644894C>T	uc003lwo.1	+	5	554	c.472C>T	c.(472-474)CCT>TCT	p.P158S		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	158					cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GAAGCCTCTTCCTCCTACTCC	0.502			T	SYK	peripheral T-cell lymphoma								136	108					0	0	0.003610	0	0
NIPAL4	348938	broad.mit.edu	37	5	156890238	156890238	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:156890238C>T	uc003lwx.3	+	2	476	c.360C>T	c.(358-360)ATC>ATT	p.I120I	ADAM19_uc003lww.1_Intron|NIPAL4_uc011ddq.1_Silent_p.I120I|NIPAL4_uc010jin.1_Missense_Mutation_p.S55L	NM_001099287	NP_001092757	Q0D2K0	NIPA4_HUMAN	ichthyin protein	120	Helical; (Potential).					integral to membrane	receptor activity				0						GCTTCTACATCGGCCTGGGCC	0.572													36	32					0	0	0.004289	0	0
ADAM19	8728	broad.mit.edu	37	5	156915364	156915364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:156915364C>T	uc003lwz.2	-	21	2523	c.2459G>A	c.(2458-2460)GGG>GAG	p.G820E	ADAM19_uc003lww.1_Missense_Mutation_p.G553E|ADAM19_uc003lwy.2_Missense_Mutation_p.G419E|ADAM19_uc011ddr.1_Missense_Mutation_p.G751E	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	820	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGACCCGGGCCCTGGGGAGTT	0.637													32	22					0	0	0.001786	0	0
C1QTNF2	114898	broad.mit.edu	37	5	159781843	159781843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:159781843C>T	uc003lyd.2	-	2	315	c.311G>A	c.(310-312)CGA>CAA	p.R104Q		NM_031908	NP_114114	Q9BXJ5	C1QT2_HUMAN	C1q and tumor necrosis factor related protein 2	59	Collagen-like.					collagen				skin(1)	1	Renal(175;0.00196)	Medulloblastoma(196;0.0354)|all_neural(177;0.116)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			AAAGCCCATTCGTCCCATCAT	0.662													9	7					0	0	0.006214	0	0
GABRB2	2561	broad.mit.edu	37	5	160753448	160753448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:160753448C>T	uc003lys.1	-	10	1336	c.1118G>A	c.(1117-1119)CGA>CAA	p.R373Q	GABRB2_uc011deh.1_Intron|GABRB2_uc003lyr.1_Intron|GABRB2_uc003lyt.1_Intron|GABRB2_uc010jiu.1_Intron	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	373	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	ccacaaggatcgatattgggt	0.08													13	13					0	0	0.003163	0	0
RARS	5917	broad.mit.edu	37	5	167919667	167919667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:167919667C>T	uc003lzx.2	+	3	225	c.184C>T	c.(184-186)CTT>TTT	p.L62F	RARS_uc011deo.1_5'UTR	NM_002887	NP_002878	P54136	SYRC_HUMAN	arginyl-tRNA synthetase	62	Could be involved in the assembly of the multisynthetase complex.				arginyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|skin(1)	3	Renal(175;0.000159)|Lung NSC(126;0.0875)|all_lung(126;0.166)	Medulloblastoma(196;0.0208)|all_neural(177;0.0227)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0693)|Epithelial(171;0.131)|OV - Ovarian serous cystadenocarcinoma(192;0.156)		CCTACAGAGTCTTCAGGCAGA	0.343													12	20					0	0	0.001368	0	0
GABRP	2568	broad.mit.edu	37	5	170235689	170235689	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:170235689C>T	uc003mau.2	+	8	963	c.765C>T	c.(763-765)TTC>TTT	p.F255F	GABRP_uc011dev.1_Silent_p.F255F	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	255	Helical; (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTTCCACTTTCCTGGTGGTGT	0.428													17	25					0	0	0.006122	0	0
RANBP17	64901	broad.mit.edu	37	5	170668103	170668103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:170668103C>T	uc003mba.2	+	23	2610	c.2594C>T	c.(2593-2595)GCT>GTT	p.A865V	RANBP17_uc003mbb.2_Missense_Mutation_p.A190V|RANBP17_uc003mbd.2_Missense_Mutation_p.A228V|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	865					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GTACTCCAGGCTTTTGTCAAA	0.433			T	TRD@	ALL								54	52					0	0	0.003610	0	0
C5orf41	153222	broad.mit.edu	37	5	172517864	172517864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:172517864C>T	uc003mch.2	+	4	986	c.682C>T	c.(682-684)CAT>TAT	p.H228Y	C5orf41_uc003mcg.2_Missense_Mutation_p.H228Y|C5orf41_uc003mcf.2_Missense_Mutation_p.H228Y|C5orf41_uc011dfd.1_Missense_Mutation_p.H228Y	NM_153607	NP_705835	Q8IUR6	CE041_HUMAN	luman-recruiting factor	228							protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(175;0.000159)|Lung NSC(126;0.00223)|all_lung(126;0.00391)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGTGAACTTTCATGTTGAATG	0.418													13	27					0	0	0.001855	0	0
NSD1	64324	broad.mit.edu	37	5	176719085	176719086	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:176719085_176719086TC>CT	uc003mfr.3	+	22	6527_6528	c.6389_6390TC>CT	c.(6388-6390)CTC>CCT	p.L2130P	NSD1_uc003mft.3_Missense_Mutation_p.L1861P|NSD1_uc011dfx.1_Missense_Mutation_p.L1778P	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	2130	PHD-type 4; atypical.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GCTGGCCAGCTCGTCTCCTGCA	0.505			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			6	6					0	0	0.004672	0	0
BTNL8	79908	broad.mit.edu	37	5	180335740	180335740	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr5:180335740G>A	uc003mmp.2	+	2	438	c.204G>A	c.(202-204)AGG>AGA	p.R68R	BTNL8_uc003mmq.2_Silent_p.R68R|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Silent_p.R68R|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	68	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ACCTCTACAGGGACGGGAAGG	0.547													62	80					0	0	0.003610	0	0
DSP	1832	broad.mit.edu	37	6	7585853	7585853	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:7585853G>A	uc003mxp.1	+	24	8637	c.8358G>A	c.(8356-8358)AAG>AAA	p.K2786K	DSP_uc003mxq.1_Silent_p.K2187K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2786	Plectin 17.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TATCCTATAAGGATGCCATAA	0.522													139	40					0	0	0.003610	0	0
DSP	1832	broad.mit.edu	37	6	7586077	7586077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:7586077C>T	uc003mxp.1	+	24	8861	c.8582C>T	c.(8581-8583)TCC>TTC	p.S2861F	DSP_uc003mxq.1_Missense_Mutation_p.S2262F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2861	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TACTCTTATTCCTACTCATTT	0.313													107	23					0	0	0.003610	0	0
RNF182	221687	broad.mit.edu	37	6	13978059	13978059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:13978059C>T	uc003nbe.2	+	3	1127	c.709C>T	c.(709-711)CAT>TAT	p.H237Y	RNF182_uc003nbf.2_Missense_Mutation_p.H237Y|RNF182_uc003nbg.2_Missense_Mutation_p.H237Y	NM_152737	NP_689950	Q8N6D2	RN182_HUMAN	ring finger protein 182	237						cytoplasm|integral to membrane|intracellular membrane-bounded organelle	protein binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Breast(50;0.00405)|Ovarian(93;0.0964)	all_hematologic(90;0.135)	Epithelial(50;0.195)			GTGTGTTTGTCATGAATTTCT	0.413													69	15					0	0	0.003610	0	0
GMNN	51053	broad.mit.edu	37	6	24781782	24781782	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:24781782C>T	uc003nem.2	+	4	414	c.207C>T	c.(205-207)GTC>GTT	p.V69V	GMNN_uc003nen.2_Silent_p.V69V	NM_015895	NP_056979	O75496	GEMI_HUMAN	geminin	69					M/G1 transition of mitotic cell cycle|negative regulation of cell cycle|negative regulation of DNA replication|negative regulation of transcription, DNA-dependent	cytosol|nucleoplasm	histone deacetylase binding			ovary(1)	1						GGGTTATTGTCCCAGAATCTA	0.368													27	4					0	0	0.007291	0	0
HIST1H1E	3008	broad.mit.edu	37	6	26156988	26156989	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:26156988_26156989GG>AA	uc003ngq.2	+	1	430_431	c.370_371GG>AA	c.(370-372)GGC>AAC	p.G124N	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	124					nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						TAAAAAGGCAGGCGCGGCCAAG	0.639													18	4					0	0	0.004672	0	0
BTN2A3	54718	broad.mit.edu	37	6	26426469	26426469	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:26426469G>A	uc011dkl.1	+	3	455	c.425_splice	c.e3-1	p.G142_splice	BTN2A3_uc011dkm.1_Splice_Site					RecName: Full=Butyrophilin subfamily 2 member A3; Flags: Precursor;												0						TCTCTCCCCAGGACTGGACTC	0.463													8	3					0	0	0.004482	0	0
GPX5	2880	broad.mit.edu	37	6	28501821	28501821	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:28501821G>A	uc003nll.2	+	5	545	c.543G>A	c.(541-543)TGG>TGA	p.W181*	GPX5_uc003nlm.2_3'UTR|GPX5_uc003nln.2_RNA	NM_001509	NP_001500	O75715	GPX5_HUMAN	glutathione peroxidase 5 isoform 1 precursor	181					lipid metabolic process|response to oxidative stress	extracellular region	glutathione peroxidase activity			skin(1)	1					Glutathione(DB00143)	ACATCCGTTGGAACTTTGAAA	0.522													91	12					0	0	0.003610	0	0
OR2H2	7932	broad.mit.edu	37	6	29555766	29555766	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:29555766C>T	uc003nmr.1	+	1	84	c.45C>T	c.(43-45)TTC>TTT	p.F15F	GABBR1_uc003nmp.3_Intron	NM_007160	NP_009091	O95918	OR2H2_HUMAN	olfactory receptor, family 2, subfamily H,	15	Extracellular (Potential).				defense response|mating|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCTGGGCTTCTCTGAACACC	0.542													55	65					0	0	0.003610	0	0
HCG4	54435	broad.mit.edu	37	6	29760077	29760077	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:29760077G>A	uc003nns.2	-	1		c.774C>T			uc010jrm.1_Silent_p.L62L|uc003nnt.2_Nonsense_Mutation_p.W98*|uc011dma.1_5'Flank	NR_002139				Homo sapiens clone HCG IV.9 unknown mRNA.												0						ACCCAGACCTGGGCAGGTGAG	0.706													4	2					0	0	0.000602	0	0
TRIM10	10107	broad.mit.edu	37	6	30124729	30124729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:30124729C>T	uc003npo.3	-	5	958	c.882G>A	c.(880-882)ATG>ATA	p.M294I	TRIM10_uc003npn.2_Missense_Mutation_p.M294I	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	294	B30.2/SPRY.					cytoplasm	zinc ion binding				0						GAAACATCTTCATCTCCCTCT	0.413													22	37					0	0	0.002299	0	0
GNL1	2794	broad.mit.edu	37	6	30520350	30520350	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:30520350C>T	uc003nqh.2	-	8	2021	c.993G>A	c.(991-993)GAG>GAA	p.E331E	GNL1_uc011dmi.1_Intron|GNL1_uc011dmj.1_Silent_p.E329E|GNL1_uc011dmk.1_Intron	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	331					response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						CTGGGCCATCCTCCTCTTCCT	0.602													26	32					0	0	0.003954	0	0
C6orf136	221545	broad.mit.edu	37	6	30617572	30617572	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:30617572C>T	uc003nqw.3	+	2	503	c.310C>T	c.(310-312)CTG>TTG	p.L104L	C6orf136_uc003nqx.3_Silent_p.L285L|C6orf136_uc011dmn.1_Intron	NM_001109938	NP_001103408	Q5SQH8	CF136_HUMAN	hypothetical protein LOC221545 isoform 1	104											0						TAGCGGCTGCCTGGATGGGCT	0.607													76	111					0	0	0.003610	0	0
MDC1	9656	broad.mit.edu	37	6	30671501	30671501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:30671501G>A	uc003nrg.3	-	10	5899	c.5459C>T	c.(5458-5460)TCA>TTA	p.S1820L	MDC1_uc003nrf.3_Missense_Mutation_p.S451L|MDC1_uc011dmp.1_Missense_Mutation_p.S1427L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1820	Required for nuclear localization (NLS2).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						ATGTGGTGGTGAATCCATGGT	0.507								Other_conserved_DNA_damage_response_genes					129	32					0	0	0.003610	0	0
VARS	7407	broad.mit.edu	37	6	31748222	31748222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:31748222G>A	uc003nxe.2	-	25	3344	c.2921C>T	c.(2920-2922)TCC>TTC	p.S974F	VARS_uc003nxf.1_5'Flank	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	974					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CCTTACCTGGGAGGTGGGTGA	0.592													258	49					0	0	0.003610	0	0
HSPA1L	3305	broad.mit.edu	37	6	31778155	31778155	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:31778155T>C	uc003nxh.2	-	2	1778	c.1595A>G	c.(1594-1596)GAG>GGG	p.E532G	HSPA1L_uc010jte.2_Missense_Mutation_p.E532G	NM_005527	NP_005518	P34931	HS71L_HUMAN	heat shock 70kDa protein 1-like	532					response to unfolded protein		ATP binding			ovary(3)|pleura(1)|kidney(1)|skin(1)	6						CCTCTGGACCTCATCTTCAGC	0.443													5	845					0	0	0.001168	0	0
SKIV2L	6499	broad.mit.edu	37	6	31928255	31928255	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:31928255T>A	uc003nyn.1	+	5	790	c.401T>A	c.(400-402)CTT>CAT	p.L134H	RDBP_uc003nyk.2_5'Flank|RDBP_uc011dot.1_5'Flank|RDBP_uc003nyl.1_5'Flank|RDBP_uc003nym.1_5'Flank|SKIV2L_uc011dou.1_Intron|SKIV2L_uc011dov.1_Intron	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	134						nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						TCCTTGTCTCTTCGCCGGCCT	0.552													243	301					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32049308	32049308	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:32049308G>A	uc003nzl.2	-	10	4081	c.3879C>T	c.(3877-3879)GTC>GTT	p.V1293V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1380	Fibronectin type-III 6.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTTGTACTGGACCATGAATG	0.617													325	67					0	0	0.003610	0	0
C6orf10	10665	broad.mit.edu	37	6	32261458	32261458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:32261458G>A	uc011dpy.1	-	12	1165	c.992C>T	c.(991-993)CCA>CTA	p.P331L	C6orf10_uc011dpx.1_Missense_Mutation_p.P113L	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	331						integral to membrane				skin(1)	1						CTGTCCTCTTGGTACATCTGA	0.448													70	14					0	0	0.003610	0	0
RXRB	6257	broad.mit.edu	37	6	33166144	33166144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:33166144G>A	uc003odb.2	-	3	760	c.581C>T	c.(580-582)CCT>CTT	p.P194L	RXRB_uc003odc.2_Missense_Mutation_p.P194L|RXRB_uc003odd.2_Missense_Mutation_p.P98L|RXRB_uc011dqr.1_Intron|RXRB_uc011dqs.1_Intron|RXRB_uc003ode.1_Missense_Mutation_p.P58L|RXRB_uc011dqt.1_Missense_Mutation_p.P194L|RXRB_uc011dqu.1_Missense_Mutation_p.P98L|SLC39A7_uc003odf.2_5'Flank|SLC39A7_uc003odg.2_5'Flank|SLC39A7_uc011dqv.1_5'Flank	NM_021976	NP_068811	P28702	RXRB_HUMAN	retinoid X receptor, beta	194	Modulating (By similarity).|Pro-rich.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	ligand-regulated transcription factor activity|retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			ovary(3)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Bexarotene(DB00307)|Etretinate(DB00926)|Tazarotene(DB00799)|Tretinoin(DB00755)	GCCACCTGGAGGGGGTGGACA	0.612													118	28					0	0	0.003610	0	0
DAXX	1616	broad.mit.edu	37	6	33289050	33289051	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:33289050_33289051GG>AA	uc003oec.2	-	3	705_706	c.501_502CC>TT	c.(499-504)GACCCC>GATTCC	p.P168S	DAXX_uc011drd.1_Missense_Mutation_p.P93S|DAXX_uc011dre.1_Missense_Mutation_p.P180S|DAXX_uc003oed.2_Missense_Mutation_p.P168S|DAXX_uc010juw.2_Missense_Mutation_p.P93S	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	168					activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						GCATTTGTGGGGTCCAAGGAGA	0.589			Mis|F|N		Pancreatic neuroendocrine tumors								30	49					0	0	0.004672	0	0
KIFC1	3833	broad.mit.edu	37	6	33372839	33372840	+	Missense_Mutation	DNP	GG	AA	AA	rs145666693	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:33372839_33372840GG>AA	uc003oef.3	+	7	1417_1418	c.967_968GG>AA	c.(967-969)GGG>AAG	p.G323K	KIFC1_uc011drf.1_Missense_Mutation_p.G315K	NM_002263	NP_002254	Q9BW19	KIFC1_HUMAN	kinesin family member C1	323	Kinesin-motor.				blood coagulation|cell division|microtubule-based movement|mitotic sister chromatid segregation	early endosome|microtubule|microtubule associated complex|microtubule organizing center|nucleus|spindle	ATP binding|microtubule motor activity				0						TGTCCTGCCGGGGGAGCCCACT	0.653													51	7					0	0	0.004672	0	0
ITPR3	3710	broad.mit.edu	37	6	33656171	33656171	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:33656171C>T	uc011drk.1	+	48	6750	c.6531C>T	c.(6529-6531)TTC>TTT	p.F2177F	ITPR3_uc003oey.2_Silent_p.F264F	NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	2177	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						AGTCCTCCTTCCTGCACAACG	0.607													29	6					0	0	0.007291	0	0
SLC26A8	116369	broad.mit.edu	37	6	35943162	35943162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:35943162C>T	uc003olm.2	-	10	1388	c.1277G>A	c.(1276-1278)GGA>GAA	p.G426E	SLC26A8_uc003oln.2_Missense_Mutation_p.G426E|SLC26A8_uc003oll.2_Missense_Mutation_p.G321E	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	426	Extracellular (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CTGTTGTCTTCCTCCAGATTT	0.333													15	3					0	0	0.004007	0	0
CPNE5	57699	broad.mit.edu	37	6	36746699	36746699	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:36746699C>T	uc003omr.1	-	9	631	c.564G>A	c.(562-564)CTG>CTA	p.L188L	CPNE5_uc003oms.1_Silent_p.L167L	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	188	C2 2.									skin(1)	1						CTTTCTTGTCCAGCTTGTTGG	0.537													73	20					0	0	0.003610	0	0
FGD2	221472	broad.mit.edu	37	6	36979536	36979536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:36979536G>A	uc010jwp.1	+	4	604	c.433G>A	c.(433-435)GAT>AAT	p.D145N	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_Intron|FGD2_uc003oni.1_5'Flank	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	145	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						CTTCCCAGAGGATGTGGTCAG	0.582													54	10					0	0	0.003610	0	0
C6orf129	154467	broad.mit.edu	37	6	37450986	37450986	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:37450986G>A	uc003ont.2	-	4	331	c.270C>T	c.(268-270)CTC>CTT	p.L90L		NM_138493	NP_612502	Q9P0B6	CF129_HUMAN	hypothetical protein LOC154467	90	Helical; (Potential).					integral to membrane					0						AGGCATAGACGAGCGTCAGGA	0.537													49	12					0	0	0.003610	0	0
MDGA1	266727	broad.mit.edu	37	6	37620006	37620006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:37620006C>T	uc003onu.1	-	7	2272	c.1093G>A	c.(1093-1095)GAG>AAG	p.E365K	MDGA1_uc003onw.3_RNA	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	365	Ig-like 4.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						GTCACCTTCTCCTGGGGCACT	0.582													76	16					0	0	0.003610	0	0
DNAH8	1769	broad.mit.edu	37	6	38890917	38890917	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:38890917C>T	uc003ooe.1	+	70	10695	c.10095C>T	c.(10093-10095)ATC>ATT	p.I3365I	uc003oof.1_RNA	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GAGAAAAAATCCGGTGGACCC	0.448													20	6					0	0	0.002299	0	0
DNAH8	1769	broad.mit.edu	37	6	38893853	38893853	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:38893853G>A	uc003ooe.1	+	72	10934	c.10334G>A	c.(10333-10335)GGA>GAA	p.G3445E	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GGGCTACAGGGATTACCAGGA	0.428													85	14					0	0	0.003610	0	0
DNAH8	1769	broad.mit.edu	37	6	38917251	38917251	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:38917251G>A	uc003ooe.1	+	79	12102	c.11502G>A	c.(11500-11502)TGG>TGA	p.W3834*	DNAH8_uc003oog.1_Nonsense_Mutation_p.W283*|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGAAGGGGTGGAAAAGCTGGT	0.373													99	27					0	0	0.003610	0	0
UBR2	23304	broad.mit.edu	37	6	42637845	42637845	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:42637845G>A	uc011dur.1	+	35	3897	c.3897G>A	c.(3895-3897)GAG>GAA	p.E1299E	UBR2_uc011dus.1_Silent_p.E944E|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	1299					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			CTTATTCTGAGAGCATAAAAG	0.383													22	4					0	0	0.002299	0	0
ZNF318	24149	broad.mit.edu	37	6	43322940	43322940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:43322940G>A	uc003oux.2	-	4	2210	c.2132C>T	c.(2131-2133)CCA>CTA	p.P711L	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	711					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CTTTAGGAATGGAGGGCTGTT	0.512													19	25					0	0	0.007413	0	0
COL9A1	1297	broad.mit.edu	37	6	70944604	70944604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:70944604C>T	uc003pfg.3	-	34	2311	c.2152G>A	c.(2152-2154)GGA>AGA	p.G718R	COL9A1_uc003pfe.3_Missense_Mutation_p.G267R|COL9A1_uc003pff.3_Missense_Mutation_p.G475R	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	718	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						CCCCGACTTCCCTCAGGCCCT	0.592													23	4					0	0	0.002780	0	0
COL9A1	1297	broad.mit.edu	37	6	71004057	71004057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:71004057G>A	uc003pfg.3	-	5	668	c.509C>T	c.(508-510)TCG>TTG	p.S170L		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	170	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GGACAAATTCGAAAAGGCTGC	0.428													64	8					0	0	0.003610	0	0
IMPG1	3617	broad.mit.edu	37	6	76640707	76640707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:76640707C>T	uc003pik.1	-	15	2336	c.2206G>A	c.(2206-2208)GAA>AAA	p.E736K		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	736					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				ACCTCGCATTCCTTTGTGCCA	0.562													53	8					0	0	0.003610	0	0
CNR1	1268	broad.mit.edu	37	6	88853950	88853950	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:88853950G>A	uc011dzq.1	-	2	4607	c.1044C>T	c.(1042-1044)ATC>ATT	p.I348I	CNR1_uc010kbz.2_Silent_p.I348I|CNR1_uc011dzr.1_Silent_p.I348I|CNR1_uc011dzs.1_Silent_p.I348I|CNR1_uc003pmq.3_Silent_p.I348I|CNR1_uc011dzt.1_Silent_p.I348I|CNR1_uc010kca.2_Silent_p.I315I	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	348	Helical; Name=6; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	ACACCACCAGGATCAGGACCA	0.517													85	18					0	0	0.003610	0	0
MCHR2	84539	broad.mit.edu	37	6	100395829	100395829	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:100395829G>A	uc003pqh.1	-	3	516	c.201C>T	c.(199-201)GTC>GTT	p.V67V	MCHR2_uc003pqi.1_Silent_p.V67V	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	67	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		AGATGTCAGGGACTGTTTTTT	0.418													17	1					0	0	0.007413	0	0
C6orf203	51250	broad.mit.edu	37	6	107361206	107361206	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:107361206C>T	uc003prq.2	+	2	323	c.242C>T	c.(241-243)TCC>TTC	p.S81F	C6orf203_uc011eaj.1_Missense_Mutation_p.S86F|C6orf203_uc010kde.2_Missense_Mutation_p.S81F	NM_016487	NP_057571	Q9P0P8	CF203_HUMAN	hypothetical protein LOC51250 isoform a	81											0	Breast(9;0.00124)|all_epithelial(6;0.0729)	all_cancers(87;0.00461)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|Colorectal(196;0.171)|all_epithelial(87;0.23)	BRCA - Breast invasive adenocarcinoma(8;0.000395)|all cancers(7;0.00065)|Epithelial(6;0.000834)|OV - Ovarian serous cystadenocarcinoma(5;0.244)	BRCA - Breast invasive adenocarcinoma(108;0.117)		TTTCCTTTTTCCGTAAGACTC	0.338													80	14					0	0	0.003610	0	0
SOBP	55084	broad.mit.edu	37	6	107854792	107854792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:107854792G>A	uc003prx.2	+	4	1055	c.551G>A	c.(550-552)CGA>CAA	p.R184Q	SOBP_uc003prw.1_Missense_Mutation_p.R184Q	NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	184							metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		GCCTGCCGACGAGCCTACTTC	0.572													62	11					0	0	0.003610	0	0
REV3L	5980	broad.mit.edu	37	6	111689225	111689225	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:111689225A>C	uc003puy.3	-	14	6089	c.5766T>G	c.(5764-5766)ATT>ATG	p.I1922M	REV3L_uc003pux.3_Missense_Mutation_p.I1844M|REV3L_uc003puz.3_Missense_Mutation_p.I1844M|REV3L_uc003pva.1_RNA	NM_002912	NP_002903	O60673	DPOLZ_HUMAN	DNA polymerase zeta	1922					DNA-dependent DNA replication|translesion synthesis	nucleus|zeta DNA polymerase complex	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|nucleotide binding			large_intestine(2)|ovary(2)|skin(2)	6		all_cancers(87;7.57e-06)|Acute lymphoblastic leukemia(125;2.46e-08)|all_hematologic(75;1.08e-06)|all_epithelial(87;0.00138)|Colorectal(196;0.021)		OV - Ovarian serous cystadenocarcinoma(136;0.0314)|Epithelial(106;0.057)|all cancers(137;0.0663)		GCCGTCCACCAATCTCCCTAT	0.388								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					7	2					0	0	0.001984	0	0
GPRC6A	222545	broad.mit.edu	37	6	117127829	117127829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:117127829G>A	uc003pxj.1	-	3	1061	c.1039C>T	c.(1039-1041)CCC>TCC	p.P347S	GPRC6A_uc003pxk.1_Intron|GPRC6A_uc003pxl.1_Missense_Mutation_p.P347S	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	347	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CTGTCACTGGGAAGCAAGTGC	0.383													17	11					0	0	0.006122	0	0
RFX6	222546	broad.mit.edu	37	6	117248384	117248384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:117248384C>T	uc003pxm.2	+	17	2143	c.2080C>T	c.(2080-2082)CAT>TAT	p.H694Y		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	694					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						TCAAGCCAATCATGACTTTTA	0.537													25	39					0	0	0.003330	0	0
THEMIS	387357	broad.mit.edu	37	6	128134279	128134279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:128134279C>T	uc003qbi.2	-	5	1826	c.1507G>A	c.(1507-1509)GAA>AAA	p.E503K	THEMIS_uc010kfa.2_Missense_Mutation_p.E406K|THEMIS_uc011ebt.1_Missense_Mutation_p.E503K|THEMIS_uc010kfb.2_Missense_Mutation_p.E468K	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	503	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						ACAGGAATTTCCCAGCACTCC	0.483													35	4					0	0	0.003755	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762807	130762807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:130762807C>T	uc003qca.2	+	3	2111	c.1240C>T	c.(1240-1242)CGG>TGG	p.R414W	TMEM200A_uc010kfh.2_Missense_Mutation_p.R414W|TMEM200A_uc010kfi.2_Missense_Mutation_p.R414W|TMEM200A_uc003qcb.2_Missense_Mutation_p.R414W	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	414	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GGCAGAACAACGGAAACATCC	0.483													38	11					0	0	0.006999	0	0
ENPP3	5169	broad.mit.edu	37	6	131971266	131971266	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:131971266T>C	uc003qcu.3	+	4	601	c.254T>C	c.(253-255)TTT>TCT	p.F85S	ENPP3_uc010kfn.1_RNA|ENPP3_uc011ecc.1_Missense_Mutation_p.F51S|ENPP3_uc010kfo.1_RNA|ENPP3_uc010kfp.1_RNA|ENPP3_uc010kfq.2_RNA|ENPP3_uc003qcv.2_Missense_Mutation_p.F85S	NM_005021	NP_005012	O14638	ENPP3_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	85	Extracellular (Potential).|SMB 1.				immune response|nucleoside triphosphate catabolic process|phosphate metabolic process	extracellular region|integral to plasma membrane|perinuclear region of cytoplasm	metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity			ovary(3)|skin(1)	4	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0252)|OV - Ovarian serous cystadenocarcinoma(155;0.0511)		TGCTGGGATTTTGAAGACACC	0.393													35	48					0	0	0.007835	0	0
KIAA1244	57221	broad.mit.edu	37	6	138601288	138601288	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:138601288C>T	uc003qhu.2	+	14	2448	c.2448C>T	c.(2446-2448)ATC>ATT	p.I816I		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	816					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		TTCCCCTCATCACAATGCTGA	0.562													27	1					0	0	0.006320	0	0
SAMD5	389432	broad.mit.edu	37	6	147830197	147830197	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:147830197G>A	uc003qmc.1	+	1	135	c.133G>A	c.(133-135)GGG>AGG	p.G45R		NM_001030060	NP_001025231	Q5TGI4	SAMD5_HUMAN	sterile alpha motif domain containing 5	45	SAM.										0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;9.55e-10)|GBM - Glioblastoma multiforme(68;0.112)		GGATGCCATCGGGGTGCTGGC	0.692													19	3					0	0	0.006122	0	0
RAET1L	154064	broad.mit.edu	37	6	150342228	150342228	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:150342228G>A	uc011eei.1	-	3	505	c.444C>T	c.(442-444)TTC>TTT	p.F148F		NM_130900	NP_570970	Q5VY80	RET1L_HUMAN	retinoic acid early transcript 1L precursor	148	MHC class I alpha-2 like (By similarity).				antigen processing and presentation|immune response	anchored to membrane|MHC class I protein complex					0		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.193)	OV - Ovarian serous cystadenocarcinoma(155;2.4e-12)		CAAAGAGTAGGAAGGTCTGTC	0.502													104	19					0	0	0.003610	0	0
SYNE1	23345	broad.mit.edu	37	6	152576061	152576061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:152576061C>T	uc010kiw.2	-	104	20026	c.19424G>A	c.(19423-19425)CGA>CAA	p.R6475Q	SYNE1_uc010kiv.2_Missense_Mutation_p.R999Q|SYNE1_uc003qos.3_Missense_Mutation_p.R999Q|SYNE1_uc003qot.3_Missense_Mutation_p.R6404Q|SYNE1_uc003qou.3_Missense_Mutation_p.R6475Q	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6475	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGATGACATCGTTGATTCAC	0.363										HNSCC(10;0.0054)			21	4					0	0	0.002299	0	0
CLDN20	49861	broad.mit.edu	37	6	155597436	155597436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:155597436G>A	uc003qql.1	+	2	963	c.583G>A	c.(583-585)GAC>AAC	p.D195N	TFB1M_uc003qqj.3_Intron|TFB1M_uc003qqk.2_Intron	NM_001001346	NP_001001346	P56880	CLD20_HUMAN	claudin 20	195	Cytoplasmic (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	integral to membrane|tight junction	identical protein binding|structural molecule activity				0				OV - Ovarian serous cystadenocarcinoma(155;7.82e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0114)		AGCTAGACTCGACCCACCCAC	0.408													33	6					0	0	0.002836	0	0
SYNJ2	8871	broad.mit.edu	37	6	158483032	158483032	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:158483032C>T	uc003qqx.1	+	8	1038	c.963C>T	c.(961-963)CTC>CTT	p.L321L	SYNJ2_uc011efm.1_Intron|SYNJ2_uc003qqw.1_Silent_p.L321L|SYNJ2_uc003qqy.1_Silent_p.L34L|SYNJ2_uc011efn.1_Intron|SYNJ2_uc010kjo.1_Silent_p.L270L|SYNJ2_uc003qqz.1_5'UTR	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	321	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		AGAAGCTGCTCTGGGCTTCTT	0.398													155	36					0	0	0.003610	0	0
PLG	5340	broad.mit.edu	37	6	161152120	161152120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:161152120G>A	uc003qtm.3	+	11	1357	c.1294G>A	c.(1294-1296)GAT>AAT	p.D432N		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	432	Kringle 4.	Omega-aminocarboxylic acids.			extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	TCCAGATGCCGATAAAGGCCC	0.512													44	8					0	0	0.002222	0	0
T	6862	broad.mit.edu	37	6	166580940	166580940	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr6:166580940T>A	uc003quu.1	-	2	633	c.140A>T	c.(139-141)GAG>GTG	p.E47V	T_uc003qut.1_Missense_Mutation_p.E47V|T_uc003quv.1_Missense_Mutation_p.E47V	NM_003181	NP_003172	O15178	BRAC_HUMAN	transcription factor T	47					anterior/posterior axis specification, embryo|mesoderm development|primitive streak formation	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|pancreas(1)	2		Prostate(117;4.48e-07)|Ovarian(120;1.78e-06)|Breast(66;2.54e-06)|Lung SC(201;0.0225)|Esophageal squamous(34;0.0559)		OV - Ovarian serous cystadenocarcinoma(33;1.09e-113)|GBM - Glioblastoma multiforme(31;1.51e-108)|BRCA - Breast invasive adenocarcinoma(81;8.45e-09)|LUAD - Lung adenocarcinoma(999;0.0407)		CTCGCTCTCCTCCAGGCCCAC	0.682									Chordoma_Familial_Clustering_of				18	3					0	0	0.001882	0	0
INTS1	26173	broad.mit.edu	37	7	1542610	1542610	+	Silent	SNP	C	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:1542610C>A	uc003skn.2	-	3	377	c.276G>T	c.(274-276)CTG>CTT	p.L92L	INTS1_uc003skq.2_Silent_p.L92L	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	92					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		CAGCCTCAGCCAGGCGCCCCA	0.612													101	50					1.11883e-47	1.42466e-47	0.003610	1	0
CARD11	84433	broad.mit.edu	37	7	2976739	2976739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:2976739C>T	uc003smv.2	-	9	1677	c.1273G>A	c.(1273-1275)GAG>AAG	p.E425K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	425	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity	p.E425K(1)		haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ATGCAGGCCTCCCGCCGCACC	0.607			Mis		DLBCL								9	35					0	0	0.000978	0	0
CARD11	84433	broad.mit.edu	37	7	2979511	2979511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:2979511C>T	uc003smv.2	-	6	1140	c.736G>A	c.(736-738)GAG>AAG	p.E246K		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	246	Potential.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TGATTTCTCTCCAGCTTACAT	0.478			Mis		DLBCL								29	114					0	0	0.001786	0	0
GLCCI1	113263	broad.mit.edu	37	7	8124643	8124643	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:8124643A>C	uc003srk.2	+	7	1853	c.1294A>C	c.(1294-1296)ATG>CTG	p.M432L		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	432											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		CTTTGAGGAAATGGCGTAAGT	0.443													38	18					0	0	0.006999	0	0
THSD7A	221981	broad.mit.edu	37	7	11485935	11485935	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:11485935C>T	uc003ssf.3	-	13	3069	c.2817G>A	c.(2815-2817)AAG>AAA	p.K939K		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	939	TSP type-1 9.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TACATTTTTCCTTCTTTTTAC	0.353										HNSCC(18;0.044)			37	14					0	0	0.006230	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18067130	18067130	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:18067130G>A	uc003stz.2	-	1	357	c.276C>T	c.(274-276)TTC>TTT	p.F92F		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	92					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					GGGCATAAGGGAAGCATGGGA	0.468													123	70					0	0	0.003610	0	0
ABCB5	340273	broad.mit.edu	37	7	20768058	20768058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:20768058G>A	uc003suw.3	+	14	2058	c.1512G>A	c.(1510-1512)ATG>ATA	p.M504I	ABCB5_uc010kuh.2_Missense_Mutation_p.M949I|ABCB5_uc003sux.1_Missense_Mutation_p.M127I	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	504	Extracellular (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CTGGACGAATGACCCCAGAGG	0.294													32	18					0	0	0.001786	0	0
STK31	56164	broad.mit.edu	37	7	23810696	23810696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:23810696G>A	uc003sws.3	+	14	1853	c.1786G>A	c.(1786-1788)GAA>AAA	p.E596K	STK31_uc003swt.3_Missense_Mutation_p.E573K|STK31_uc011jze.1_Missense_Mutation_p.E596K|STK31_uc010kuq.2_Missense_Mutation_p.E573K	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	596							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						TCATTCAGAGGAAAGGCTCAT	0.328													7	77					0	0	0.001984	0	0
LOC402644	402644	broad.mit.edu	37	7	28319036	28319036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:28319036G>A	uc010kuz.1	-	1	283	c.283C>T	c.(283-285)CCT>TCT	p.P95S		NM_001126493	NP_001119965			hypothetical protein LOC402644												0						AAGATGCCAGGACCTGTACGC	0.488													9	24					0	0	0.000673	0	0
CRHR2	1395	broad.mit.edu	37	7	30706899	30706899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:30706899C>T	uc003tbn.2	-	3	504	c.260G>A	c.(259-261)GGG>GAG	p.G87E	CRHR2_uc010kvw.1_Missense_Mutation_p.G87E|CRHR2_uc010kvx.1_Missense_Mutation_p.G87E|CRHR2_uc010kvy.1_Intron|CRHR2_uc003tbo.2_Missense_Mutation_p.G73E|CRHR2_uc003tbp.2_Missense_Mutation_p.G114E	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	87	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						GGCCCACGTCCCATTCTCCAA	0.542													32	19					0	0	0.002096	0	0
C7orf16	10842	broad.mit.edu	37	7	31735228	31735228	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:31735228C>T	uc003tcl.2	+	3	386	c.228C>T	c.(226-228)TTC>TTT	p.F76F	C7orf16_uc011kaf.1_Intron	NM_006658	NP_006649	O96001	GSUB_HUMAN	G-substrate isoform 1	76					behavior|central nervous system development|intracellular protein kinase cascade|protein phosphorylation	soluble fraction				ovary(2)|central_nervous_system(1)	3			GBM - Glioblastoma multiforme(11;0.216)			TCCCACCTTTCATACCAGGTA	0.443													15	63					0	0	0.004990	0	0
NPSR1	387129	broad.mit.edu	37	7	34698054	34698054	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:34698054C>T	uc003teg.1	+	1	158	c.30C>T	c.(28-30)TTC>TTT	p.F10F	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.F10F|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Silent_p.F10F|NPSR1_uc003tei.1_Silent_p.F10F|NPSR1_uc010kww.1_Silent_p.F10F|NPSR1_uc011kar.1_Silent_p.F10F	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	10	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	AGGGCAGCTTCGATTCCAGTG	0.572													44	13					0	0	0.003610	0	0
NPSR1	387129	broad.mit.edu	37	7	34889218	34889218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:34889218G>A	uc003teg.1	+	9	1195	c.1067G>A	c.(1066-1068)AGA>AAA	p.R356K	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.E389E|NPSR1_uc010kwt.1_Missense_Mutation_p.R203K|NPSR1_uc010kwu.1_Missense_Mutation_p.R146K|NPSR1_uc010kwv.1_Missense_Mutation_p.R290K|NPSR1_uc003tei.1_Intron|NPSR1_uc010kww.1_Intron|NPSR1_uc011kar.1_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	356	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TTCCGGGAGAGAACTGAGAGG	0.488													31	71					0	0	0.005524	0	0
TBX20	57057	broad.mit.edu	37	7	35288308	35288308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:35288308C>T	uc011kas.1	-	3	537	c.526G>A	c.(526-528)GAC>AAC	p.D176N		NM_001077653	NP_001071121	Q9UMR3	TBX20_HUMAN	T-box transcription factor TBX20	176	T-box.					nucleus	DNA binding			central_nervous_system(1)	1						AACGGCGGGTCGGCCTTGCCA	0.532													32	13					0	0	0.002836	0	0
TXNDC3	51314	broad.mit.edu	37	7	37907333	37907333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:37907333G>A	uc003tfn.2	+	11	1023	c.651G>A	c.(649-651)ATG>ATA	p.M217I		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	217	NDK 1.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						TCTCTTTTATGACAAGTGGCT	0.403									Kartagener_syndrome				23	15					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	7	38279703	38279703	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:38279703C>T	uc003tfu.3	-	5	541	c.306G>A	c.(304-306)AAG>AAA	p.K102K	uc003tfv.2_Silent_p.K102K					SubName: Full=TARP protein;																		AGACCACACTCTTGAGGAGCA	0.453													6	25					0	0	0.004482	0	0
GLI3	2737	broad.mit.edu	37	7	42005576	42005576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:42005576G>A	uc011kbh.1	-	15	3186	c.3095C>T	c.(3094-3096)CCC>CTC	p.P1032L	GLI3_uc011kbg.1_Missense_Mutation_p.P973L	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1032					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						CATCGCCGGGGGGTTGCAGCT	0.706									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				8	28					0	0	0.003080	0	0
NPC1L1	29881	broad.mit.edu	37	7	44579783	44579783	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:44579783C>T	uc003tlb.2	-	2	269	c.213G>A	c.(211-213)CTG>CTA	p.L71L	NPC1L1_uc003tlc.2_Silent_p.L71L|NPC1L1_uc011kbw.1_Silent_p.L71L|NPC1L1_uc003tld.2_Silent_p.L71L	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	71	Extracellular (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	GTAATAGGATCAGGTGATCAC	0.582													11	43					0	0	0.000673	0	0
PKD1L1	168507	broad.mit.edu	37	7	47852763	47852763	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:47852763G>A	uc003tny.1	-	49	7302	c.7302C>T	c.(7300-7302)GGC>GGT	p.G2434G	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Silent_p.G161G	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2434	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TTGTCCCACAGCCCCCAGGAC	0.582													60	101					0	0	0.003610	0	0
ABCA13	154664	broad.mit.edu	37	7	48443295	48443295	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:48443295G>A	uc003toq.2	+	39	11914	c.11889G>A	c.(11887-11889)GTG>GTA	p.V3963V	ABCA13_uc010kys.1_Silent_p.V1037V|ABCA13_uc003tos.1_Silent_p.V789V|ABCA13_uc010kyt.1_RNA	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	3963	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTCAGGATGTGGACTTAACTC	0.453													5	26					0	0	0.000602	0	0
COBL	23242	broad.mit.edu	37	7	51096928	51096928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:51096928C>T	uc003tpr.3	-	10	2050	c.1865G>A	c.(1864-1866)GGG>GAG	p.G622E	COBL_uc003tps.2_Missense_Mutation_p.G679E|COBL_uc011kcl.1_Missense_Mutation_p.G622E|COBL_uc003tpp.3_Missense_Mutation_p.G408E|COBL_uc003tpq.3_Missense_Mutation_p.G563E|COBL_uc003tpo.3_Missense_Mutation_p.G164E	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	622										skin(3)|ovary(2)	5	Glioma(55;0.08)					CATTAGATTCCCATCTTTAGA	0.488													20	77					0	0	0.001523	0	0
ZNF716	441234	broad.mit.edu	37	7	57522201	57522201	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:57522201T>A	uc011kdi.1	+	2	187	c.75T>A	c.(73-75)TTT>TTA	p.F25L		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						CTATAGAATTTTCTCTGGCGG	0.388													27	9					0	0	0.003954	0	0
TYW1	55253	broad.mit.edu	37	7	66548429	66548429	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:66548429C>T	uc003tvn.2	+	11	1436	c.1287C>T	c.(1285-1287)AAC>AAT	p.N429N	TYW1_uc010lai.2_RNA|TYW1_uc011kef.1_Silent_p.N43N	NM_018264	NP_060734	Q9NV66	TYW1_HUMAN	radical S-adenosyl methionine and flavodoxin	429					tRNA processing		4 iron, 4 sulfur cluster binding|FMN binding|iron ion binding|oxidoreductase activity			skin(1)	1		Lung NSC(55;0.0846)|all_lung(88;0.183)				ACCACACCAACCCCGTGGGCA	0.418													14	55					0	0	0.002450	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72658504	72658504	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:72658504G>A	uc003txs.1	-	13	1408	c.480C>T	c.(478-480)ATC>ATT	p.I160I	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						catcgattgcgatagaatatg	0													18	47					0	0	0.006122	0	0
FKBP6	8468	broad.mit.edu	37	7	72744229	72744229	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:72744229G>A	uc003tya.2	+	4	474	c.342G>A	c.(340-342)CCG>CCA	p.P114P	FKBP6_uc003twz.2_Intron|FKBP6_uc011kew.1_Silent_p.P109P|FKBP6_uc010lbe.1_RNA|TRIM50_uc003txy.1_5'Flank|TRIM50_uc003txz.1_5'Flank	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	114	PPIase FKBP-type.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				TGTTCAAACCGAACTACGCCT	0.537													31	21					0	0	0.002096	0	0
BAZ1B	9031	broad.mit.edu	37	7	72863880	72863880	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:72863880G>A	uc003tyc.2	-	15	4065	c.3720C>T	c.(3718-3720)TCC>TCT	p.S1240S		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	1240					ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding			ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				ACCTGCCACGGGAGTTGCGCC	0.438													43	17					0	0	0.002852	0	0
ELN	2006	broad.mit.edu	37	7	73474513	73474513	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:73474513C>T	uc003tzw.2	+	24	1729	c.1638C>T	c.(1636-1638)CTC>CTT	p.L546L	RFC2_uc011kfa.1_Intron|ELN_uc003tzn.2_Silent_p.L540L|ELN_uc003tzz.2_Silent_p.L459L|ELN_uc003tzo.2_Intron|ELN_uc003tzp.2_Silent_p.L451L|ELN_uc003tzq.2_Silent_p.L404L|ELN_uc003tzr.2_Intron|ELN_uc003tzs.2_Silent_p.L521L|ELN_uc003tzt.2_Silent_p.L545L|ELN_uc003tzu.2_Silent_p.L526L|ELN_uc003tzv.2_Silent_p.L511L|ELN_uc003tzx.2_Silent_p.L530L|ELN_uc011kff.1_Silent_p.L540L|ELN_uc003tzy.2_Silent_p.L516L	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	569	Ala-rich.				blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	AAGCCCAGCTCCGTGAGTGCC	0.637			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						21	110					0	0	0.003330	0	0
YWHAG	7532	broad.mit.edu	37	7	75959211	75959211	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:75959211T>C	uc011kgj.1	-	2	644	c.427A>G	c.(427-429)AGG>GGG	p.R143G		NM_012479	NP_036611	P61981	1433G_HUMAN	tyrosine 3-monooxygenase/tryptophan	143					G2/M transition of mitotic cell cycle|regulation of neuron differentiation|regulation of signal transduction|regulation of synaptic plasticity	cytosol	insulin-like growth factor receptor binding|protein kinase C binding|protein kinase C inhibitor activity			ovary(1)|lung(1)	2						ACCGTCGCCCTTTTCTCTCCG	0.577													4	162					0	0	0.000248	0	0
HGF	3082	broad.mit.edu	37	7	81335623	81335623	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:81335623C>T	uc003uhl.2	-	15	1902	c.1737G>A	c.(1735-1737)CTG>CTA	p.L579L	HGF_uc003uhm.2_Silent_p.L574L	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	579	Peptidase S1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCATTAAAACCAGATCTGATC	0.423													11	44					0	0	0.001368	0	0
PCLO	27445	broad.mit.edu	37	7	82508685	82508685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:82508685C>T	uc003uhx.2	-	10	13911	c.13622G>A	c.(13621-13623)GGA>GAA	p.G4541E	PCLO_uc003uhv.2_Missense_Mutation_p.G4541E|PCLO_uc003uht.1_5'UTR|PCLO_uc003uhu.1_5'UTR	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCCGCACTTCCCCCAGGAAG	0.358													15	5					0	0	0.004990	0	0
PCLO	27445	broad.mit.edu	37	7	82583596	82583596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:82583596C>T	uc003uhx.2	-	5	6962	c.6673G>A	c.(6673-6675)GAA>AAA	p.E2225K	PCLO_uc003uhv.2_Missense_Mutation_p.E2225K|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2156					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAAGAAATTTCCTCAGAATCT	0.403													15	12					0	0	0.003163	0	0
PCLO	27445	broad.mit.edu	37	7	82585122	82585122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:82585122C>T	uc003uhx.2	-	5	5436	c.5147G>A	c.(5146-5148)GGA>GAA	p.G1716E	PCLO_uc003uhv.2_Missense_Mutation_p.G1716E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1647					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTCGAAGATCCCTCTCCCCT	0.453													12	44					0	0	0.000978	0	0
PCLO	27445	broad.mit.edu	37	7	82585473	82585473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:82585473C>T	uc003uhx.2	-	5	5085	c.4796G>A	c.(4795-4797)GGA>GAA	p.G1599E	PCLO_uc003uhv.2_Missense_Mutation_p.G1599E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1530					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTGCCTTTTCCCTTTGTTTC	0.428													102	53					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82585844	82585844	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:82585844C>T	uc003uhx.2	-	5	4714	c.4425G>A	c.(4423-4425)AGG>AGA	p.R1475R	PCLO_uc003uhv.2_Silent_p.R1475R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1406					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAGTGTCTTTCCTTTCTTCTT	0.373													7	43					0	0	0.003080	0	0
PCLO	27445	broad.mit.edu	37	7	82764940	82764940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:82764940C>T	uc003uhx.2	-	3	2215	c.1926G>A	c.(1924-1926)ATG>ATA	p.M642I	PCLO_uc003uhv.2_Missense_Mutation_p.M642I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	588	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GAGCTCTTTTCATTTGACAGT	0.413													9	2					0	0	0.004482	0	0
SEMA3A	10371	broad.mit.edu	37	7	83764194	83764194	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:83764194C>T	uc003uhz.2	-	2	501	c.186G>A	c.(184-186)TTG>TTA	p.L62L		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	62	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						GTTCCTCATCCAAAAGGAAGG	0.388													40	17					0	0	0.001951	0	0
SEMA3D	223117	broad.mit.edu	37	7	84628811	84628811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:84628811C>T	uc003uic.2	-	17	2319	c.2279G>A	c.(2278-2280)CGA>CAA	p.R760Q	SEMA3D_uc010led.2_Missense_Mutation_p.R760Q|SEMA3D_uc003uib.2_Missense_Mutation_p.R399Q	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	760	Arg/Lys-rich (basic).				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						TCTTCGATTTCGTTTCTTCTT	0.453													13	41					0	0	0.003163	0	0
GRM3	2913	broad.mit.edu	37	7	86479781	86479781	+	Silent	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:86479781A>G	uc003uid.2	+	5	3586	c.2487A>G	c.(2485-2487)CAA>CAG	p.Q829Q	GRM3_uc010lef.2_Missense_Mutation_p.T472A|GRM3_uc010leg.2_Silent_p.Q701Q|GRM3_uc010leh.2_Silent_p.Q421Q	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	829	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TCCTGTTTCAACCCCAGAAGA	0.493													7	27					0	0	0.001984	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86521202	86521202	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:86521202C>T	uc011kha.1	-	21	3053	c.2868G>A	c.(2866-2868)CTG>CTA	p.L956L	KIAA1324L_uc003uif.1_Silent_p.L716L|KIAA1324L_uc011kgz.1_Silent_p.L842L|KIAA1324L_uc003uie.2_Silent_p.L789L	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	956	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					ATTTGTATTCCAGTCTAAATA	0.303													3	2					0	0	0.004672	0	0
ANKIB1	54467	broad.mit.edu	37	7	92027171	92027171	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:92027171C>T	uc003ulw.2	+	19	2906	c.2530C>T	c.(2530-2532)CAG>TAG	p.Q844*	ANKIB1_uc010lew.1_Nonsense_Mutation_p.Q113*	NM_019004	NP_061877	Q9P2G1	AKIB1_HUMAN	ankyrin repeat and IBR domain containing 1	844							protein binding|zinc ion binding			lung(1)	1	all_cancers(62;2.06e-09)|all_epithelial(64;9.24e-09)|Breast(17;0.0034)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|all cancers(6;0.00183)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGACTCTCTTCAGGTAGCCTT	0.488													60	41					0	0	0.003610	0	0
TFPI2	7980	broad.mit.edu	37	7	93519937	93519937	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:93519937C>T	uc003umy.1	-	1	129	c.54G>A	c.(52-54)GAG>GAA	p.E18E	GNGT1_uc003umx.1_Intron|TFPI2_uc003umz.1_Silent_p.E18E|TFPI2_uc003una.1_Silent_p.E18E|TFPI2_uc003unb.1_Silent_p.E18E|TFPI2_uc010lfg.1_Silent_p.E18E	NM_006528	NP_006519	P48307	TFPI2_HUMAN	tissue factor pathway inhibitor 2 precursor	18					blood coagulation	proteinaceous extracellular matrix	extracellular matrix structural constituent|serine-type endopeptidase inhibitor activity			pancreas(1)	1	all_cancers(62;4.45e-10)|all_epithelial(64;2.92e-09)|Lung NSC(181;0.218)		STAD - Stomach adenocarcinoma(171;0.000967)			CCAGTGCAGCCTCCGTCAGGA	0.701													8	43					0	0	0.004482	0	0
LMTK2	22853	broad.mit.edu	37	7	97822951	97822951	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:97822951C>T	uc003upd.1	+	11	3467	c.3174C>T	c.(3172-3174)ACC>ACT	p.T1058T		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1058					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					AACCAGCCACCACGGGCGATG	0.617													4	36					0	0	0.000602	0	0
LMTK2	22853	broad.mit.edu	37	7	97833287	97833287	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:97833287C>T	uc003upd.1	+	13	4565	c.4272C>T	c.(4270-4272)TCC>TCT	p.S1424S		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1424					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					ATGACTTCTCCCCAGATCCTT	0.507													36	171					0	0	0.004878	0	0
NPTX2	4885	broad.mit.edu	37	7	98257929	98257929	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:98257929C>T	uc003upl.2	+	5	1461	c.1284C>T	c.(1282-1284)CTC>CTT	p.L428L		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	428	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			AGGAGCGTCTCCTTGACTTGT	0.582													11	4					0	0	0.001368	0	0
TMEM130	222865	broad.mit.edu	37	7	98449090	98449090	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:98449090G>A	uc003upo.2	-	6	1149	c.960C>T	c.(958-960)ATC>ATT	p.I320I	TMEM130_uc011kiq.1_Silent_p.I301I|TMEM130_uc011kir.1_Silent_p.I320I|TMEM130_uc003upn.2_Silent_p.I218I	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	320	Extracellular (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TCTTGCTGATGATATTCTCGG	0.592													13	70					0	0	0.001855	0	0
TRRAP	8295	broad.mit.edu	37	7	98507909	98507909	+	Silent	SNP	C	T	T	rs138096391		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:98507909C>T	uc003upp.2	+	15	1790	c.1581C>T	c.(1579-1581)TTC>TTT	p.F527F	TRRAP_uc011kis.1_Silent_p.F527F|TRRAP_uc003upr.2_Silent_p.F219F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	527					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TGCCTCCCTTCGAGAAGCAAG	0.453													38	23					0	0	0.004878	0	0
TRRAP	8295	broad.mit.edu	37	7	98560040	98560040	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:98560040C>T	uc003upp.2	+	46	7007	c.6798C>T	c.(6796-6798)TCC>TCT	p.S2266S	TRRAP_uc011kis.1_Silent_p.S2248S|TRRAP_uc003upr.2_Silent_p.S1965S	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2266	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCAATCCCTCCCAGCTCTTCG	0.567													83	36					0	0	0.003610	0	0
TRRAP	8295	broad.mit.edu	37	7	98581822	98581822	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:98581822C>T	uc003upp.2	+	60	9350	c.9141C>T	c.(9139-9141)ATC>ATT	p.I3047I	TRRAP_uc011kis.1_Silent_p.I3018I|TRRAP_uc003upr.2_Silent_p.I2735I	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3047	FAT.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			ATGGAAAAATCGCCCGGAAAC	0.438													18	111					0	0	0.002299	0	0
AZGP1	563	broad.mit.edu	37	7	99565973	99565973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:99565973C>T	uc003ush.2	-	3	462	c.418G>A	c.(418-420)GAT>AAT	p.D140N		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	140					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TCCTTTCCATCATAGTAATAT	0.498													147	86					0	0	0.003610	0	0
C7orf51	222950	broad.mit.edu	37	7	100085872	100085872	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100085872C>T	uc003uvd.1	+	4	687	c.528C>T	c.(526-528)TTC>TTT	p.F176F	C7orf51_uc003uve.1_5'UTR	NM_173564	NP_775835	Q6ZVC0	CG051_HUMAN	hypothetical protein FLJ37538	176										skin(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CTGTCTCCTTCGATGAGTCCT	0.657													87	59					0	0	0.003610	0	0
AGFG2	3268	broad.mit.edu	37	7	100153312	100153312	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100153312C>T	uc003uvf.2	+	6	967	c.831C>T	c.(829-831)CTC>CTT	p.L277L	AGFG2_uc003uvg.1_3'UTR|AGFG2_uc010lgy.2_Missense_Mutation_p.S139F	NM_006076	NP_006067	O95081	AGFG2_HUMAN	ArfGAP with FG repeats 2	277					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			central_nervous_system(1)	1						TTGGAAGCCTCCCTCCAGCTG	0.537													96	51					0	0	0.003610	0	0
FBXO24	26261	broad.mit.edu	37	7	100187615	100187615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100187615C>T	uc003uvm.1	+	2	348	c.55C>T	c.(55-57)CCT>TCT	p.P19S	FBXO24_uc010lha.1_RNA|FBXO24_uc003uvl.1_Missense_Mutation_p.P19S|FBXO24_uc003uvn.1_Intron|uc011kjy.1_RNA|FBXO24_uc011kjz.1_Missense_Mutation_p.P57S|FBXO24_uc011kka.1_Missense_Mutation_p.P7S	NM_033506	NP_277041	O75426	FBX24_HUMAN	F-box only protein 24 isoform 1	19						ubiquitin ligase complex	ubiquitin-protein ligase activity			ovary(3)|skin(1)	4	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GAGAAGCTGCCCTTCTTGTGG	0.562													78	42					0	0	0.003610	0	0
TFR2	7036	broad.mit.edu	37	7	100238391	100238391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100238391G>A	uc003uvv.1	-	3	432	c.391C>T	c.(391-393)CAC>TAC	p.H131Y	TFR2_uc003uvw.1_Missense_Mutation_p.H131Y	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	131	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CTGCCCTGGTGGAAATCCAGG	0.627													6	35					0	0	0.001168	0	0
ZAN	7455	broad.mit.edu	37	7	100377269	100377269	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100377269C>T	uc003uwj.2	+	36	6684	c.6519C>T	c.(6517-6519)TTC>TTT	p.F2173F	ZAN_uc003uwk.2_Silent_p.F2173F|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Intron	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2173	Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TCTGTGAGTTCGGAGGTCTCT	0.652													8	0					0	0	0.006214	0	0
SRRT	51593	broad.mit.edu	37	7	100484782	100484782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100484782C>T	uc003uwy.2	+	16	2204	c.1936C>T	c.(1936-1938)CGG>TGG	p.R646W	SRRT_uc010lhl.1_Missense_Mutation_p.R645W|SRRT_uc003uxa.2_Missense_Mutation_p.R645W|SRRT_uc003uwz.2_Missense_Mutation_p.R646W	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	646					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						CATCCACGTTCGGGGGCCCAT	0.602													22	151					0	0	0.003954	0	0
MUC17	140453	broad.mit.edu	37	7	100676630	100676630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100676630G>A	uc003uxp.1	+	3	1986	c.1933G>A	c.(1933-1935)GAG>AAG	p.E645K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	645	Extracellular (Potential).|8.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGCCAGTTCTGAGGCTAGCAC	0.483													173	63					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100683198	100683198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100683198C>T	uc003uxp.1	+	3	8554	c.8501C>T	c.(8500-8502)CCT>CTT	p.P2834L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2834	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|45.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCAACAACTCCTGTTGACACC	0.493													142	105					0	0	0.003610	0	0
C7orf52	375607	broad.mit.edu	37	7	100817804	100817804	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:100817804C>T	uc003uxy.1	-	2	524	c.285G>A	c.(283-285)GTG>GTA	p.V95V	C7orf52_uc003uxz.1_Silent_p.V95V|C7orf52_uc003uya.1_Silent_p.V95V|C7orf52_uc003uyb.1_Silent_p.V95V	NM_198571	NP_940973	Q8N8M0	CG052_HUMAN	hypothetical protein LOC375607	95	N-acetyltransferase.						N-acetyltransferase activity			ovary(1)	1	Lung NSC(181;0.168)|all_lung(186;0.215)					TGGCCAGCACCACCGTGCGGT	0.672													15	11					0	0	0.003163	0	0
CUX1	1523	broad.mit.edu	37	7	101844895	101844895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:101844895C>T	uc003uyx.3	+	18	2356	c.2318C>T	c.(2317-2319)GCC>GTC	p.A773V	CUX1_uc003uys.3_Missense_Mutation_p.A784V|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	773					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GCTCCTGAGGCCGGTGCCTCT	0.677													42	99					0	0	0.002222	0	0
PRKRIP1	79706	broad.mit.edu	37	7	102040026	102040026	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:102040026C>T	uc003uzh.2	+	3	292	c.237C>T	c.(235-237)TTC>TTT	p.F79F	PRKRIP1_uc003uzf.2_Silent_p.F28F|PRKRIP1_uc003uzg.2_Silent_p.F28F|PRKRIP1_uc011kkq.1_Silent_p.F22F|PRKRIP1_uc011kkr.1_Silent_p.F79F	NM_024653	NP_078929	Q9H875	PKRI1_HUMAN	PRKR interacting protein 1 (IL11 inducible)	79	Required for RNA-binding (By similarity).					nucleolus				ovary(1)	1						GTGGAGAGTTCCACGTGTACA	0.547													25	100					0	0	0.003954	0	0
FBXL13	222235	broad.mit.edu	37	7	102518011	102518011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:102518011C>T	uc003vaq.2	-	16	1965	c.1538G>A	c.(1537-1539)CGA>CAA	p.R513Q	FBXL13_uc010liq.1_Intron|FBXL13_uc010lir.1_Missense_Mutation_p.R513Q|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.R513Q	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	513	LRR 11.										0						TTCACAATTTCGTAAACTCAA	0.323													47	23					0	0	0.003610	0	0
LRRC17	10234	broad.mit.edu	37	7	102574369	102574369	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:102574369G>A	uc003vau.2	+	2	398	c.9G>A	c.(7-9)GTG>GTA	p.V3V	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_Silent_p.V3V	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	3					bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						GGATGCGTGTGGTTACCATTG	0.493													17	4					0	0	0.004007	0	0
LRRC17	10234	broad.mit.edu	37	7	102575032	102575032	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:102575032C>T	uc003vau.2	+	2	1061	c.672C>T	c.(670-672)CCC>CCT	p.P224P	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_Silent_p.P224P	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	224					bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						ACCCGAAACCCCAAGTGTCAG	0.418													16	11					0	0	0.004007	0	0
SLC26A3	1811	broad.mit.edu	37	7	107431549	107431549	+	Missense_Mutation	SNP	C	T	T	rs71566741		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:107431549C>T	uc003ver.2	-	5	725	c.514G>A	c.(514-516)GAG>AAG	p.E172K	SLC26A3_uc003ves.2_Missense_Mutation_p.E137K	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	172					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						CTCACCCTCTCGTCATCCAGT	0.493													9	44					0	0	0.004482	0	0
LAMB4	22798	broad.mit.edu	37	7	107738880	107738880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:107738880C>T	uc010ljo.1	-	11	1412	c.1328G>A	c.(1327-1329)GGA>GAA	p.G443E	LAMB4_uc003vey.2_Missense_Mutation_p.G443E	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	443	Laminin EGF-like 3.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						GGCGCTTAGTCCGTAGTGGTT	0.572													17	35					0	0	0.006122	0	0
ZNF277	11179	broad.mit.edu	37	7	111976201	111976201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:111976201C>T	uc003vge.2	+	8	973	c.844C>T	c.(844-846)CGG>TGG	p.R282W	ZNF277_uc003vgf.2_Missense_Mutation_p.R204W|ZNF277_uc003vgg.2_Missense_Mutation_p.R107W	NM_021994	NP_068834	Q9NRM2	ZN277_HUMAN	zinc finger protein (C2H2 type) 277	282						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(2)	4						GGAAGATGATCGGGAGTTGCT	0.413													7	31					0	0	0.000673	0	0
MET	4233	broad.mit.edu	37	7	116414937	116414937	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:116414937C>T	uc003vij.2	+	15	3218	c.3031C>T	c.(3031-3033)CAG>TAG	p.Q1011*	MET_uc010lkh.2_Nonsense_Mutation_p.Q1029*|MET_uc011knj.1_Nonsense_Mutation_p.Q581*	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1011	Cytoplasmic (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding	p.L982_D1028del(3)|p.D981_D1028del(1)|p.982_1028del47(1)		upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TCTTACAGATCAGTTTCCTAA	0.383			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				10	48					0	0	0.000978	0	0
C7orf58	79974	broad.mit.edu	37	7	120767240	120767240	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:120767240T>A	uc003vjq.3	+	10	1678	c.1231T>A	c.(1231-1233)TTC>ATC	p.F411I	C7orf58_uc003vjr.1_Missense_Mutation_p.F411I|C7orf58_uc003vjs.3_Missense_Mutation_p.F411I|C7orf58_uc003vjt.3_Missense_Mutation_p.F191I|C7orf58_uc010lkk.1_Missense_Mutation_p.F191I	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	411						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CAATTTTCTCTTCCCTAATGA	0.289													11	43					0	0	0.000673	0	0
CADPS2	93664	broad.mit.edu	37	7	121985671	121985671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:121985671C>T	uc010lkp.2	-	27	3732	c.3569G>A	c.(3568-3570)CGA>CAA	p.R1190Q	CADPS2_uc011knx.1_Missense_Mutation_p.R565Q|CADPS2_uc003vkg.3_Missense_Mutation_p.R844Q|CADPS2_uc010lkq.2_Missense_Mutation_p.R1149Q	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	1190					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						GACCTTTTCTCGAAGAATATC	0.368													7	64					0	0	0.001984	0	0
CALU	813	broad.mit.edu	37	7	128409143	128409143	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:128409143C>T	uc003vns.2	+	7	1022	c.870C>T	c.(868-870)ATC>ATT	p.I290I	CALU_uc003vnq.2_Silent_p.I290I|CALU_uc003vnr.2_Silent_p.I290I	NM_001130674	NP_001124146	O43852	CALU_HUMAN	calumenin isoform b precursor	290	EF-hand 6.				platelet activation|platelet degranulation	extracellular region|Golgi apparatus|melanosome|sarcoplasmic reticulum lumen	calcium ion binding|protein binding				0						AGGAGGAGATCGTTGACAAGT	0.423													22	8					0	0	0.003330	0	0
OPN1SW	611	broad.mit.edu	37	7	128413859	128413859	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:128413859G>A	uc003vnt.3	-	4	771	c.771C>T	c.(769-771)TCC>TCT	p.S257S		NM_001708	NP_001699	P03999	OPSB_HUMAN	opsin 1 (cone pigments), short-wave-sensitive	257	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0						AGACACAGAAGGATCCTACCA	0.572													29	15					0	0	0.006320	0	0
FLNC	2318	broad.mit.edu	37	7	128486097	128486097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:128486097G>A	uc003vnz.3	+	22	4053	c.3844G>A	c.(3844-3846)GCC>ACC	p.A1282T	FLNC_uc003voa.3_Missense_Mutation_p.A1282T	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1282	Filamin 11.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						ATCCCTAACAGCCACAGGCGG	0.627													28	14					0	0	0.002096	0	0
FLNC	2318	broad.mit.edu	37	7	128486806	128486806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:128486806G>A	uc003vnz.3	+	24	4344	c.4135G>A	c.(4135-4137)GGC>AGC	p.G1379S	FLNC_uc003voa.3_Missense_Mutation_p.G1379S	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1379	Filamin 12.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CAGGGGAGCGGGCACCGGGGG	0.592													54	20					0	0	0.003610	0	0
FLNC	2318	broad.mit.edu	37	7	128486888	128486888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:128486888C>T	uc003vnz.3	+	24	4426	c.4217C>T	c.(4216-4218)ACC>ATC	p.T1406I	FLNC_uc003voa.3_Missense_Mutation_p.T1406I	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1406	Filamin 12.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGTAGCTGCACCGTGGAGTAC	0.612													9	69					0	0	0.006214	0	0
WDR91	29062	broad.mit.edu	37	7	134896318	134896318	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:134896318G>A	uc003vsp.2	-	1	1	c.-61_splice	c.e1-1			NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91											breast(2)|ovary(1)|skin(1)	4						TGGGAGAAATGGGGCGGGGCC	0.662													35	18					0	0	0.004878	0	0
MGAM	8972	broad.mit.edu	37	7	141754605	141754606	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:141754605_141754606CC>TT	uc003vwy.2	+	27	3265_3266	c.3211_3212CC>TT	c.(3211-3213)CCC>TTC	p.P1071F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1071	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCTGAACATACCCAGCATGCCA	0.436													60	47					0	0	0.004672	0	0
MGAM	8972	broad.mit.edu	37	7	141764221	141764221	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:141764221C>T	uc003vwy.2	+	37	4437	c.4383C>T	c.(4381-4383)ACC>ACT	p.T1461T		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1461	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCAGCAAGACCCTTTGTATGG	0.562													6	7					0	0	0.003080	0	0
MGAM	8972	broad.mit.edu	37	7	141765190	141765191	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:141765190_141765191CC>TT	uc003vwy.2	+	38	4594_4595	c.4540_4541CC>TT	c.(4540-4542)CCC>TTC	p.P1514F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1514	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTCCACATTTCCCTCTTCTGGC	0.614													4	7					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	7	142001220	142001220	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:142001220G>A	uc011kro.1	+	2	357	c.312G>A	c.(310-312)GAG>GAA	p.E104E						SubName: Full=V_segment translation product; Flags: Fragment;																		CAAAGCTGGAGGACTCAGCCA	0.488													7	12					0	0	0.001984	0	0
EPHB6	2051	broad.mit.edu	37	7	142564680	142564680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:142564680C>T	uc011kst.1	+	11	2391	c.1604C>T	c.(1603-1605)TCC>TTC	p.S535F	EPHB6_uc011ksu.1_Missense_Mutation_p.S535F|EPHB6_uc003wbs.2_Missense_Mutation_p.S243F|EPHB6_uc003wbt.2_Intron|EPHB6_uc003wbu.2_Missense_Mutation_p.S243F|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	535	Fibronectin type-III 2.|Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GAATCCCACTCCTTCACCCTG	0.657													54	27					0	0	0.003610	0	0
TRPV6	55503	broad.mit.edu	37	7	142573565	142573565	+	Silent	SNP	G	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:142573565G>C	uc003wbx.1	-	7	1071	c.855C>G	c.(853-855)TCC>TCG	p.S285S	TRPV6_uc003wbw.1_Silent_p.S71S|TRPV6_uc010lou.1_Silent_p.S156S	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	285	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					CATCCCCTGAGGAGTCGATCT	0.562													22	104					0	0	0.001523	0	0
OR9A2	135924	broad.mit.edu	37	7	142723785	142723786	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:142723785_142723786CC>TT	uc003wcc.1	-	1	434_435	c.434_435GG>AA	c.(433-435)TGG>TAA	p.W145*		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					ATCCAAACACCCATGACACTAT	0.436													34	27					0	0	0.004672	0	0
GSTK1	373156	broad.mit.edu	37	7	142960654	142960654	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:142960654C>T	uc003wci.2	+	1	133	c.48C>T	c.(46-48)TCC>TCT	p.S16S	GSTK1_uc011ksy.1_Silent_p.S16S|GSTK1_uc003wcj.2_Silent_p.S16S|GSTK1_uc011ksz.1_Silent_p.S16S	NM_015917	NP_057001	Q9Y2Q3	GSTK1_HUMAN	glutathione S-transferase kappa 1 isoform a	16	Glutathione binding.					outer membrane-bounded periplasmic space|peroxisome	glutathione transferase activity|identical protein binding|protein disulfide oxidoreductase activity				0	Melanoma(164;0.059)				Glutathione(DB00143)	ACGTGCTGTCCCCCTACTCCT	0.682													12	69					0	0	0.003163	0	0
FAM131B	9715	broad.mit.edu	37	7	143054461	143054461	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:143054461C>T	uc003wct.2	-	5	2144	c.438G>A	c.(436-438)ATG>ATA	p.M146I	FAM131B_uc010loz.2_Missense_Mutation_p.M114I|FAM131B_uc003wcu.3_Missense_Mutation_p.M146I|FAM131B_uc010lpa.2_Missense_Mutation_p.M174I	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	146											0	Melanoma(164;0.205)					CCTCACCATCCATGGAAGACC	0.517													86	32					0	0	0.003610	0	0
EPHA1	2041	broad.mit.edu	37	7	143095447	143095447	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:143095447C>T	uc003wcz.2	-	7	1518	c.1431G>A	c.(1429-1431)GCG>GCA	p.A477A		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	477	Extracellular (Potential).|Fibronectin type-III 2.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				AGGTCAGGTTCGCCCCAGGGC	0.607													55	31					0	0	0.003610	0	0
FAM115A	9747	broad.mit.edu	37	7	143573547	143573547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:143573547G>A	uc003wdo.1	-	2	288	c.155C>T	c.(154-156)TCC>TTC	p.S52F	FAM115A_uc011ktu.1_Intron|FAM115A_uc003wdp.1_Missense_Mutation_p.S52F	NM_014719	NP_055534	Q9Y4C2	F115A_HUMAN	hypothetical protein LOC9747	52											0	Melanoma(164;0.0903)					GCCATAGGAGGAGGCAGCAAT	0.562													29	23					0	0	0.001512	0	0
OR2A14	135941	broad.mit.edu	37	7	143826566	143826566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:143826566C>T	uc011kua.1	+	1	361	c.361C>T	c.(361-363)CGC>TGC	p.R121C		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					GTCCTATGATCGCTATGCGGA	0.488													31	126					0	0	0.007291	0	0
NOBOX	135935	broad.mit.edu	37	7	144099034	144099034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:144099034C>T	uc011kue.1	-	3	220	c.220G>A	c.(220-222)GAT>AAT	p.D74N		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	74					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					TCTAAGGGATCATGTTGGGGC	0.507													10	64					0	0	0.000673	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148106498	148106498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:148106498C>T	uc003weu.1	+	23	4247	c.3731C>T	c.(3730-3732)CCA>CTA	p.P1244L	CNTNAP2_uc003wev.1_Missense_Mutation_p.P21L	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1244	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GCGGATTTTCCATATAATCCA	0.408										HNSCC(39;0.1)			38	17					0	0	0.006230	0	0
ZNF467	168544	broad.mit.edu	37	7	149467625	149467625	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:149467625C>T	uc003wgd.2	-	3	196	c.55G>A	c.(55-57)GAG>AAG	p.E19K	ZNF467_uc003wgc.2_Missense_Mutation_p.E19K	NM_207336	NP_997219	Q7Z7K2	ZN467_HUMAN	zinc finger protein 467	19					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGGGCCATCTCTGGCTGTCCC	0.557													66	32					0	0	0.003610	0	0
SSPO	23145	broad.mit.edu	37	7	149480348	149480348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:149480348C>T	uc010lpk.2	+	16	2230	c.2230C>T	c.(2230-2232)CCC>TCC	p.P744S	SSPO_uc010lpl.1_Missense_Mutation_p.P79S	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	744	VWFD 2.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCTGCTGTCTCCCTGCACCAC	0.602													15	35					0	0	0.004990	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174220	150174220	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:150174220G>A	uc003whj.2	+	5	1680	c.1350G>A	c.(1348-1350)GGG>GGA	p.G450G		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	450						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GCGGGACTGGGAAGAGTGCGA	0.547													26	34					0	0	0.005443	0	0
GIMAP5	55340	broad.mit.edu	37	7	150437980	150437980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:150437980G>A	uc003whr.1	+	2	360	c.8G>A	c.(7-9)GGA>GAA	p.G3E	GIMAP5_uc010lpu.2_Intron	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	3	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGAATGGGAGGATTCCAGAGG	0.458													7	40					0	0	0.003080	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439912	150439912	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:150439912C>T	uc003whr.1	+	3	1037	c.685C>T	c.(685-687)CTG>TTG	p.L229L	GIMAP5_uc010lpu.2_Silent_p.L87L	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	229	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGATGCCCAGCTGCTCCAAAG	0.597													10	51					0	0	0.000673	0	0
ASB10	136371	broad.mit.edu	37	7	150883911	150883911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:150883911G>A	uc003wjm.1	-	1	568	c.442C>T	c.(442-444)CGT>TGT	p.R148C	ASB10_uc003wjl.1_Missense_Mutation_p.R148C|ASB10_uc003wjn.1_Intron	NM_001142459	NP_001135931	Q8WXI3	ASB10_HUMAN	ankyrin repeat and SOCS box-containing 10	103					intracellular signal transduction						0			OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTCAGAGCACGGATGTTGAAG	0.632													15	6					0	0	0.002450	0	0
PTPRN2	5799	broad.mit.edu	37	7	157388004	157388004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:157388004C>T	uc003wno.2	-	17	2543	c.2422G>A	c.(2422-2424)GAT>AAT	p.D808N	PTPRN2_uc003wnp.2_Missense_Mutation_p.D791N|PTPRN2_uc003wnq.2_Missense_Mutation_p.D779N|PTPRN2_uc003wnr.2_Missense_Mutation_p.D770N|PTPRN2_uc011kwa.1_Missense_Mutation_p.D831N	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	808	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGGTCGTGATCCATCTGCAGA	0.542													38	10					0	0	0.005524	0	0
CSMD1	64478	broad.mit.edu	37	8	3432491	3432491	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:3432491G>A	uc011kwk.1	-	10	1713	c.1323C>T	c.(1321-1323)GTC>GTT	p.V441V		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	441	CUB 3.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGGTGGTGATGACCCACACAC	0.527													13	78					0	0	0.003163	0	0
RP1L1	94137	broad.mit.edu	37	8	10470224	10470224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:10470224G>A	uc003wtc.2	-	4	1613	c.1384C>T	c.(1384-1386)CCC>TCC	p.P462S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	462					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GAGCCCTCGGGGAGGCCGGTG	0.721													17	55					0	0	0.001216	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17055909	17055909	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:17055909C>T	uc003wxe.2	+	6	860	c.463C>T	c.(463-465)CAT>TAT	p.H155Y		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	155	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		GAAGATGGATCATCATTGTCC	0.259													15	8					0	0	0.006122	0	0
MTMR7	9108	broad.mit.edu	37	8	17169089	17169089	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:17169089C>T	uc003wxm.2	-	9	1271	c.1032G>A	c.(1030-1032)AGG>AGA	p.R344R	MTMR7_uc003wxn.2_Silent_p.R123R|MTMR7_uc011kya.1_5'UTR|MTMR7_uc011kyb.1_5'UTR	NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	344	Myotubularin phosphatase.|Substrate binding (By similarity).						protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CCTGAGCGGTCCTGTCCCAGC	0.567													44	176					0	0	0.003214	0	0
PSD3	23362	broad.mit.edu	37	8	18658824	18658824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:18658824G>A	uc003wza.2	-	7	2082	c.1979C>T	c.(1978-1980)TCC>TTC	p.S660F	PSD3_uc003wyy.2_Missense_Mutation_p.S126F|PSD3_uc003wyz.2_5'UTR	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	660	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		ATATCTATTGGAGAAGTGTAT	0.294													27	17					0	0	0.001786	0	0
PSD3	23362	broad.mit.edu	37	8	18662313	18662313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:18662313C>T	uc003wza.2	-	5	1833	c.1730G>A	c.(1729-1731)GGT>GAT	p.G577D	PSD3_uc003wyy.2_Missense_Mutation_p.G43D|PSD3_uc003wyz.2_5'UTR	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	577	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		GCTGCTGGTACCATTACTGAG	0.453													51	75					0	0	0.003610	0	0
SLC18A1	6570	broad.mit.edu	37	8	20030599	20030599	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:20030599C>T	uc011kyq.1	-	7	1143	c.672G>A	c.(670-672)GAG>GAA	p.E224E	SLC18A1_uc003wzl.2_Silent_p.E11E|SLC18A1_uc003wzm.2_Silent_p.E224E|SLC18A1_uc011kyr.1_Silent_p.E224E|SLC18A1_uc003wzn.2_Silent_p.E224E|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Silent_p.E224E	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	224	Cytoplasmic (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		CTCGTCCTCTCTCATGGTCAT	0.617													8	0					0	0	0.006214	0	0
PIWIL2	55124	broad.mit.edu	37	8	22138652	22138652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:22138652C>T	uc003xbn.2	+	3	366	c.218C>T	c.(217-219)TCC>TTC	p.S73F	PIWIL2_uc011kzf.1_Missense_Mutation_p.S73F|PIWIL2_uc010ltv.2_Missense_Mutation_p.S73F	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	73					DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		GGTTTGGTCTCCATGTTCCGA	0.418													40	41					0	0	0.002852	0	0
PIWIL2	55124	broad.mit.edu	37	8	22161634	22161634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:22161634C>T	uc003xbn.2	+	11	1430	c.1282C>T	c.(1282-1284)CGT>TGT	p.R428C	PIWIL2_uc011kzf.1_Missense_Mutation_p.R428C|PIWIL2_uc010ltv.2_Missense_Mutation_p.R428C	NM_018068	NP_060538	Q8TC59	PIWL2_HUMAN	piwi-like 2	428	PAZ.				DNA methylation involved in gamete generation|gene silencing by RNA|germ-line stem cell maintenance|multicellular organismal development|oogenesis|piRNA metabolic process|positive regulation of translation|RNA 5'-end processing|spermatogenesis	chromatoid body|pi-body	piRNA binding			skin(1)	1				Colorectal(74;0.018)|COAD - Colon adenocarcinoma(73;0.0707)		TCGTACCTATCGTATTGATGA	0.398													39	30					0	0	0.004878	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23049444	23049444	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:23049444C>T	uc003xda.2	-	10	1235	c.1170G>A	c.(1168-1170)ACG>ACA	p.T390T		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	390	Cytoplasmic (Potential).|Death.				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		TCTCATTTTTCGTGAGGTCCA	0.522													36	24					0	0	0.002836	0	0
ADAM7	8756	broad.mit.edu	37	8	24324357	24324357	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:24324357G>A	uc003xeb.2	+	6	548	c.435G>A	c.(433-435)GTG>GTA	p.V145V	ADAM7_uc003xea.1_Silent_p.V145V	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	145	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		TTGAACCAGTGAAATACTCAG	0.368													15	58					0	0	0.004007	0	0
ADAM7	8756	broad.mit.edu	37	8	24324458	24324458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:24324458C>T	uc003xeb.2	+	6	649	c.536C>T	c.(535-537)ACT>ATT	p.T179I	ADAM7_uc003xea.1_Missense_Mutation_p.T179I	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	179	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		ACCAGAAAAACTGTTCCAGGG	0.348													47	25					0	0	0.003610	0	0
ADAM7	8756	broad.mit.edu	37	8	24349525	24349525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:24349525G>A	uc003xeb.2	+	14	1579	c.1466G>A	c.(1465-1467)GGA>GAA	p.G489E	ADAM7_uc003xec.2_Missense_Mutation_p.G261E	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	489	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		AGGGTCAATGGATTTCCTTGC	0.483													29	63					0	0	0.001512	0	0
NEFM	4741	broad.mit.edu	37	8	24775339	24775339	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:24775339G>A	uc003xed.3	+	3	2004	c.1971G>A	c.(1969-1971)CCG>CCA	p.P657P	NEFM_uc011lac.1_Intron|NEFM_uc010lue.2_Silent_p.P281P	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	657	4.|6 X 13 AA approximate tandem repeats of K-S-P-V-[PS]-K-S-P-V-E-E-[KA]-[GAK].|Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		CTCCTGTGCCGAAATCACCAG	0.478													79	42					0	0	0.003610	0	0
NEFM	4741	broad.mit.edu	37	8	24775838	24775838	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:24775838G>A	uc003xed.3	+	3	2503	c.2470G>A	c.(2470-2472)GAA>AAA	p.E824K	NEFM_uc011lac.1_Missense_Mutation_p.E606K|NEFM_uc010lue.2_Missense_Mutation_p.E448K	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	824	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		cagtgggagggaagaggagaa	0.219													18	13					0	0	0.007413	0	0
EBF2	64641	broad.mit.edu	37	8	25747300	25747300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:25747300C>T	uc003xes.1	-	8	736	c.719G>A	c.(718-720)GGA>GAA	p.G240E	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_5'Flank	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	240					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		TGCTCTCCGTCCATGCTTGGA	0.463													8	35					0	0	0.003080	0	0
SCARA3	51435	broad.mit.edu	37	8	27516431	27516431	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:27516431C>T	uc003xga.1	+	5	885	c.744C>T	c.(742-744)CTC>CTT	p.L248L	SCARA3_uc003xgb.1_Silent_p.L248L	NM_016240	NP_057324	Q6AZY7	SCAR3_HUMAN	scavenger receptor class A, member 3 isoform 1	248	Extracellular (Potential).				response to oxidative stress|UV protection	collagen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	scavenger receptor activity			skin(2)|ovary(1)|breast(1)	4		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0219)|Colorectal(74;0.148)		CCCTGACCCTCCAGAAGATTG	0.592													21	15					0	0	0.003330	0	0
HMBOX1	79618	broad.mit.edu	37	8	28876303	28876303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:28876303C>T	uc003xhd.3	+	6	1066	c.724C>T	c.(724-726)CCC>TCC	p.P242S	HMBOX1_uc010lvd.2_Missense_Mutation_p.P242S|HMBOX1_uc003xhc.3_Missense_Mutation_p.P242S|HMBOX1_uc010lve.2_RNA|HMBOX1_uc003xhe.2_Missense_Mutation_p.P242S|HMBOX1_uc011lay.1_Missense_Mutation_p.P242S|HMBOX1_uc003xhf.2_Missense_Mutation_p.P230S|HMBOX1_uc003xhg.2_Missense_Mutation_p.P230S	NM_001135726	NP_001129198	Q6NT76	HMBX1_HUMAN	homeobox containing 1	242					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Ovarian(32;0.0192)		KIRC - Kidney renal clear cell carcinoma(542;0.135)|Kidney(114;0.161)		GAGACCAGCCCCCATTCCAAT	0.453													6	36					0	0	0.001168	0	0
GTF2E2	2961	broad.mit.edu	37	8	30464637	30464637	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:30464637G>A	uc003xig.2	-	6	833	c.580C>T	c.(580-582)CGT>TGT	p.R194C		NM_002095	NP_002086	P29084	T2EB_HUMAN	general transcription factor IIE, polypeptide 2,	194					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	transcription factor TFIIE complex	DNA binding|protein binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.113)|Kidney(114;0.135)		TTATCGGGACGATTTACAAAT	0.303													32	29					0	0	0.003271	0	0
WRN	7486	broad.mit.edu	37	8	30948373	30948373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:30948373C>T	uc003xio.3	+	15	2532	c.1744C>T	c.(1744-1746)CAG>TAG	p.Q582*	WRN_uc010lvk.2_Nonsense_Mutation_p.Q49*	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	582	Helicase ATP-binding.				base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TTTGTGCTTCCAGTATCCACC	0.299			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				12	51					0	0	0.001855	0	0
NRG1	3084	broad.mit.edu	37	8	32621491	32621491	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:32621491C>T	uc003xiv.2	+	12	2011	c.1494C>T	c.(1492-1494)TTC>TTT	p.F498F	NRG1_uc010lvo.2_3'UTR|NRG1_uc003xiu.2_Silent_p.F503F|NRG1_uc003xiw.2_Silent_p.F495F|NRG1_uc003xit.2_3'UTR|NRG1_uc010lvr.2_Silent_p.F240F|NRG1_uc010lvs.2_Silent_p.F240F|NRG1_uc010lvp.2_Silent_p.F452F|NRG1_uc010lvq.2_Silent_p.F435F|NRG1_uc011lbg.1_3'UTR|NRG1_uc011lbh.1_Silent_p.F341F|NRG1_uc003xja.2_Silent_p.F309F	NM_013964	NP_039258	Q02297	NRG1_HUMAN	neuregulin 1 isoform HRG-alpha	498	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|cardiac muscle cell differentiation|cell communication|cell proliferation|cellular protein complex disassembly|embryo development|mammary gland development|negative regulation of cardiac muscle cell apoptosis|negative regulation of secretion|negative regulation of transcription, DNA-dependent|nervous system development|neural crest cell development|Notch signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of striated muscle cell differentiation|regulation of protein heterodimerization activity|regulation of protein homodimerization activity|transmembrane receptor protein tyrosine kinase signaling pathway|ventricular cardiac muscle cell differentiation|wound healing|wound healing	apical plasma membrane|extracellular region|extracellular space|integral to membrane|nucleus|plasma membrane	cytokine activity|ErbB-3 class receptor binding|growth factor activity|growth factor activity|protein binding|protein tyrosine kinase activator activity|receptor tyrosine kinase binding|transcription cofactor activity|transmembrane receptor protein tyrosine kinase activator activity				0		Breast(100;0.203)		KIRC - Kidney renal clear cell carcinoma(67;0.0768)|Kidney(114;0.0943)		CTCAGCAGTTCAGCTCCTTCC	0.557													20	12					0	0	0.001523	0	0
TACC1	6867	broad.mit.edu	37	8	38696040	38696041	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:38696040_38696041CC>TT	uc010lwp.2	+	8	2271_2272	c.1892_1893CC>TT	c.(1891-1893)ACC>ATT	p.T631I	TACC1_uc011lby.1_Missense_Mutation_p.T436I|TACC1_uc003xma.2_Missense_Mutation_p.T69I|TACC1_uc003xlz.2_Missense_Mutation_p.T436I|TACC1_uc003xmc.3_Missense_Mutation_p.T435I|TACC1_uc011lbz.1_Missense_Mutation_p.T618I|TACC1_uc003xmb.3_Missense_Mutation_p.T557I|TACC1_uc010lwo.1_Missense_Mutation_p.T164I|TACC1_uc003xmf.3_Missense_Mutation_p.T221I|TACC1_uc011lca.1_Missense_Mutation_p.T614I|TACC1_uc011lcb.1_Missense_Mutation_p.T407I|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Missense_Mutation_p.T448I|TACC1_uc010lwq.2_Missense_Mutation_p.T448I	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	631					cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			TACGAAGAGACCCGGCAAGAAG	0.371													33	22					0	0	0.004672	0	0
ANK1	286	broad.mit.edu	37	8	41530113	41530113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:41530113C>T	uc003xok.2	-	38	4939	c.4855G>A	c.(4855-4857)GAA>AAA	p.E1619K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.E1619K|ANK1_uc003xoj.2_Missense_Mutation_p.E1619K|ANK1_uc003xol.2_Intron|ANK1_uc003xom.2_Missense_Mutation_p.E1660K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1619	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TCCACAAGTTCCAGAGAGCCC	0.567													79	47					0	0	0.003610	0	0
KIAA0146	23514	broad.mit.edu	37	8	48353101	48353101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:48353101C>T	uc003xqd.2	+	8	1103	c.1094C>T	c.(1093-1095)CCC>CTC	p.P365L	KIAA0146_uc011lcz.1_RNA|KIAA0146_uc011lda.1_Missense_Mutation_p.P54L|KIAA0146_uc011ldb.1_Missense_Mutation_p.P365L|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Missense_Mutation_p.P295L|KIAA0146_uc011ldd.1_Missense_Mutation_p.P305L|KIAA0146_uc003xqe.2_5'UTR|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Missense_Mutation_p.P54L|KIAA0146_uc010lxt.2_Missense_Mutation_p.P54L	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	365											0		Lung NSC(58;0.175)				ATCTTCCCTCCCTGGTGAGTG	0.517													13	42					0	0	0.001855	0	0
SNTG1	54212	broad.mit.edu	37	8	51449367	51449367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:51449367C>T	uc010lxy.1	+	12	1050	c.679C>T	c.(679-681)CGG>TGG	p.R227W	SNTG1_uc003xqs.1_Missense_Mutation_p.R227W|SNTG1_uc010lxz.1_Missense_Mutation_p.R227W|SNTG1_uc011ldl.1_RNA	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	227					cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				AGATTTGAGTCGGTGAGTCCG	0.443													19	74					0	0	0.001523	0	0
PXDNL	137902	broad.mit.edu	37	8	52321411	52321411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:52321411G>A	uc003xqu.3	-	17	2874	c.2773C>T	c.(2773-2775)CCT>TCT	p.P925S	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	925					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GGAGGCCAAGGAAAGCCTGTC	0.627													10	27					0	0	0.006214	0	0
ST18	9705	broad.mit.edu	37	8	53025792	53025793	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:53025792_53025793CT>TA	uc003xqz.2	-	21	3265_3266	c.3109_3110AG>TA	c.(3109-3111)AGT>TAT	p.S1037Y	ST18_uc011ldq.1_Missense_Mutation_p.S684Y|ST18_uc011ldr.1_Missense_Mutation_p.S1002Y|ST18_uc011lds.1_Missense_Mutation_p.S942Y|ST18_uc003xra.2_Missense_Mutation_p.S1037Y	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	1037						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CTGTTTGATACTTTCCAGTAGA	0.45													9	37					0	0	0.004672	0	0
RP1	6101	broad.mit.edu	37	8	55534795	55534795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:55534795G>A	uc003xsd.1	+	3	882	c.734G>A	c.(733-735)GGG>GAG	p.G245E	RP1_uc011ldy.1_Missense_Mutation_p.G245E	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	245					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGATTACCAGGGATCTCTCAG	0.438													10	46					0	0	0.000978	0	0
RP1	6101	broad.mit.edu	37	8	55541144	55541144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:55541144G>A	uc003xsd.1	+	4	4850	c.4702G>A	c.(4702-4704)GAA>AAA	p.E1568K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1568					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GAAAACTATGGAAACTGGAAG	0.373													9	15					0	0	0.004482	0	0
RP1	6101	broad.mit.edu	37	8	55541965	55541965	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:55541965C>T	uc003xsd.1	+	4	5671	c.5523C>T	c.(5521-5523)ACC>ACT	p.T1841T	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1841					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GCAATGAAACCTGTGCCAAGG	0.413													20	7					0	0	0.001216	0	0
SDR16C5	195814	broad.mit.edu	37	8	57218276	57218276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:57218276G>A	uc003xsy.1	-	6	1354	c.716C>T	c.(715-717)CCT>CTT	p.P239L	SDR16C5_uc010lyk.1_Missense_Mutation_p.P239L|SDR16C5_uc010lyl.1_Missense_Mutation_p.P195L	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	239					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CAACAGAGAAGGACAGCTAGG	0.294													20	18					0	0	0.001882	0	0
PENK	5179	broad.mit.edu	37	8	57354305	57354305	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:57354305G>A	uc003xsz.2	-	2	411	c.330C>T	c.(328-330)TTC>TTT	p.F110F	PENK_uc003xta.3_Silent_p.F110F	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	110					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			TTTTCTTCATGAAGCCTCCAT	0.488													71	50					0	0	0.003610	0	0
CHD7	55636	broad.mit.edu	37	8	61766932	61766932	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:61766932C>T	uc003xue.2	+	32	7263	c.6786C>T	c.(6784-6786)GTC>GTT	p.V2262V		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2262					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CAGGAGCTGTCTCTAGAGGGA	0.408													10	19					0	0	0.000673	0	0
PREX2	80243	broad.mit.edu	37	8	68992747	68992747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:68992747G>A	uc003xxv.1	+	16	1739	c.1712G>A	c.(1711-1713)GGA>GAA	p.G571E	PREX2_uc003xxu.1_Missense_Mutation_p.G571E|PREX2_uc011lez.1_Missense_Mutation_p.G506E	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	571					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GAAATGGAGGGATCAAATATG	0.308													9	36					0	0	0.000673	0	0
PREX2	80243	broad.mit.edu	37	8	69005939	69005939	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:69005939T>C	uc003xxv.1	+	21	2377	c.2350T>C	c.(2350-2352)TTT>CTT	p.F784L	PREX2_uc003xxu.1_Missense_Mutation_p.F784L|PREX2_uc011lez.1_Missense_Mutation_p.F719L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	784					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGGGGATGCTTTTGACTGTAA	0.408													30	29					0	0	0.002445	0	0
PREX2	80243	broad.mit.edu	37	8	69058566	69058566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:69058566C>T	uc003xxv.1	+	34	4237	c.4210C>T	c.(4210-4212)CAT>TAT	p.H1404Y		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1404					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GTTTAAAATTCATCCTGTTCT	0.318													11	15					0	0	0.000978	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70591627	70591627	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:70591627G>A	uc003xyl.2	-	8	2717	c.2010C>T	c.(2008-2010)ATC>ATT	p.I670I	SLCO5A1_uc010lzb.2_Silent_p.I615I|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Silent_p.I670I	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	670	Helical; Name=10; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			GTGTTACTATGATAGCTGATG	0.423													53	35					0	0	0.003610	0	0
KCNB2	9312	broad.mit.edu	37	8	73848969	73848969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:73848969G>A	uc003xzb.2	+	3	1967	c.1379G>A	c.(1378-1380)CGA>CAA	p.R460Q		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	460	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GCCTTCGCTCGAAGTATGGAA	0.512													25	69					0	0	0.003954	0	0
STAU2	27067	broad.mit.edu	37	8	74464404	74464404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:74464404G>A	uc003xzm.2	-	13	1609	c.1373C>T	c.(1372-1374)TCG>TTG	p.S458L	STAU2_uc011lfg.1_Missense_Mutation_p.S286L|STAU2_uc003xzn.2_Missense_Mutation_p.S426L|STAU2_uc011lfh.1_Missense_Mutation_p.S354L|STAU2_uc003xzo.2_Missense_Mutation_p.S458L|STAU2_uc003xzp.2_Missense_Mutation_p.S426L|STAU2_uc011lfi.1_Missense_Mutation_p.S420L|STAU2_uc003xzq.2_Missense_Mutation_p.S238L|STAU2_uc010lzk.2_Missense_Mutation_p.S426L|STAU2_uc010lzl.1_Missense_Mutation_p.S286L	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	458	Required for dendritic transport (By similarity).				transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			TGAACTATTCGATGTGGGAGA	0.443													51	45					0	0	0.003610	0	0
FABP5	2171	broad.mit.edu	37	8	82195725	82195726	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:82195725_82195726CC>TT	uc003yca.1	+	2	252_253	c.204_205CC>TT	c.(202-207)ACCCTG>ACTTTG	p.68_69TL>TL		NM_001444	NP_001435	Q01469	FABP5_HUMAN	fatty acid binding protein 5	68_69					epidermis development	cytoplasm	fatty acid binding|protein binding|transporter activity				0	Lung NSC(7;3.57e-05)|all_lung(9;0.00011)		Epithelial(68;0.102)			TTTCTTGTACCCTGGGAGAGAA	0.421													14	8					0	0	0.004672	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885264	88885264	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:88885264C>T	uc003ydz.2	-	1	1033	c.936G>A	c.(934-936)GTG>GTA	p.V312V		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	312	WD 2.									ovary(1)	1						CGGAGTTATTCACATGACCTT	0.527													15	43					0	0	0.003163	0	0
ESRP1	54845	broad.mit.edu	37	8	95683804	95683804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:95683804C>T	uc003ygq.3	+	11	1540	c.1357C>T	c.(1357-1359)CCC>TCC	p.P453S	ESRP1_uc003ygr.3_Missense_Mutation_p.P453S|ESRP1_uc003ygs.3_Missense_Mutation_p.P453S|ESRP1_uc003ygt.3_Missense_Mutation_p.P453S|ESRP1_uc003ygu.3_Missense_Mutation_p.P453S|ESRP1_uc003ygv.2_Missense_Mutation_p.P293S|ESRP1_uc003ygw.2_Missense_Mutation_p.P293S	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	453	RRM 3.				mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TCGAGGTCTTCCCTATGCAGC	0.488													254	168					0	0	0.003610	0	0
INTS8	55656	broad.mit.edu	37	8	95869077	95869077	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:95869077C>T	uc003yhb.2	+	15	1951	c.1825C>T	c.(1825-1827)CAG>TAG	p.Q609*	INTS8_uc003yha.1_Nonsense_Mutation_p.Q609*|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Nonsense_Mutation_p.Q436*	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	609					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					GAAGCTTCGTCAGGTCATGCT	0.463													396	233					0	0	0.003610	0	0
NIPAL2	79815	broad.mit.edu	37	8	99217347	99217347	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:99217347G>A	uc003yil.1	-	7	1039	c.783C>T	c.(781-783)TTC>TTT	p.F261F	NIPAL2_uc011lgw.1_Silent_p.F57F|NIPAL2_uc003yim.1_Silent_p.F261F	NM_024759	NP_079035	Q9H841	NPAL2_HUMAN	NIPA-like domain containing 2	261	Helical; (Potential).					integral to membrane					0						ACTTGACTTGGAAAACACAAG	0.363													7	37					0	0	0.001984	0	0
RGS22	26166	broad.mit.edu	37	8	100990159	100990159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:100990159C>T	uc003yjb.1	-	23	3700	c.3505G>A	c.(3505-3507)GAA>AAA	p.E1169K	RGS22_uc003yja.1_Missense_Mutation_p.E988K|RGS22_uc003yjc.1_Missense_Mutation_p.E1157K	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1169	Potential.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			CCAGATTTTTCGTCTTCTAGG	0.299													14	26					0	0	0.004990	0	0
RGS22	26166	broad.mit.edu	37	8	101083624	101083624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:101083624C>T	uc003yjb.1	-	6	762	c.567G>A	c.(565-567)ATG>ATA	p.M189I	RGS22_uc003yja.1_Intron|RGS22_uc003yjc.1_Intron|RGS22_uc011lgz.1_RNA|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	189					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AGAACTTTTTCATAATTACAA	0.343													20	26					0	0	0.001523	0	0
SPAG1	6674	broad.mit.edu	37	8	101206344	101206344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:101206344C>T	uc003yjh.1	+	10	1030	c.944C>T	c.(943-945)ACC>ATC	p.T315I	SPAG1_uc003yjg.1_Missense_Mutation_p.T315I|SPAG1_uc003yji.1_Missense_Mutation_p.T315I	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	315					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		TTGCAGAAAACCTTGTCAGAG	0.303													12	8					0	0	0.001855	0	0
LRP12	29967	broad.mit.edu	37	8	105503740	105503740	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:105503740C>A	uc003yma.2	-	7	1836	c.1741G>T	c.(1741-1743)GCG>TCG	p.A581S	LRP12_uc003ymb.2_Missense_Mutation_p.A562S|LRP12_uc003ylz.2_5'UTR	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	581	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GATCGTACCGCTAGCCTCAGA	0.358													14	30					2.31682e-05	2.9231e-05	0.003163	1	0
TMEM74	157753	broad.mit.edu	37	8	109796454	109796454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:109796454C>T	uc003ymy.1	-	2	979	c.874G>A	c.(874-876)GAA>AAA	p.E292K	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	292					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			AAGGACAGTTCCAGAGTGTTT	0.393													21	16					0	0	0.002780	0	0
TMEM74	157753	broad.mit.edu	37	8	109796904	109796904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:109796904C>T	uc003ymy.1	-	2	529	c.424G>A	c.(424-426)GAA>AAA	p.E142K	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	142					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			TTTGGATTTTCCCAGCCAAGC	0.473													25	86					0	0	0.004656	0	0
KCNV1	27012	broad.mit.edu	37	8	110985004	110985004	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:110985004C>T	uc003ynr.3	-	2	816	c.474G>A	c.(472-474)AGG>AGA	p.R158R	KCNV1_uc010mcw.2_Silent_p.R158R	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	158	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TCAGCTCTTTCCTTCTGAAGT	0.383													40	29					0	0	0.001951	0	0
CSMD3	114788	broad.mit.edu	37	8	113254008	113254008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:113254008G>A	uc003ynu.2	-	66	10568	c.10409C>T	c.(10408-10410)TCT>TTT	p.S3470F	CSMD3_uc003yns.2_Missense_Mutation_p.S2672F|CSMD3_uc003ynt.2_Missense_Mutation_p.S3430F|CSMD3_uc011lhx.1_Missense_Mutation_p.S3301F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3470	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAATATTTTAGAACCAGCTAT	0.274										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			47	32					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	113326807	113326807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:113326807C>T	uc003ynu.2	-	48	7559	c.7400G>A	c.(7399-7401)GGA>GAA	p.G2467E	CSMD3_uc003yns.2_Missense_Mutation_p.G1669E|CSMD3_uc003ynt.2_Missense_Mutation_p.G2427E|CSMD3_uc011lhx.1_Missense_Mutation_p.G2363E|CSMD3_uc003ynw.1_Missense_Mutation_p.G178E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2467	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAATATGACTCCAGTAGAATC	0.388										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	25					0	0	0.001368	0	0
CSMD3	114788	broad.mit.edu	37	8	113649119	113649119	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:113649119C>T	uc003ynu.2	-	22	3801	c.3642G>A	c.(3640-3642)CTG>CTA	p.L1214L	CSMD3_uc003yns.2_Silent_p.L486L|CSMD3_uc003ynt.2_Silent_p.L1174L|CSMD3_uc011lhx.1_Silent_p.L1110L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1214	Sushi 6.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATGTTCCTTCCAGTCGATAAC	0.507										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			19	12					0	0	0.006122	0	0
TRPS1	7227	broad.mit.edu	37	8	116616963	116616963	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:116616963C>T	uc003ynz.2	-	3	1653	c.1194G>A	c.(1192-1194)CAG>CAA	p.Q398Q	TRPS1_uc011lhy.1_Silent_p.Q402Q|TRPS1_uc003yny.2_Silent_p.Q411Q|TRPS1_uc010mcy.2_Silent_p.Q398Q	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	398					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			TTATCTTGTCCTGCCATTTTC	0.483									Langer-Giedion_syndrome				8	11					0	0	0.004482	0	0
SAMD12	401474	broad.mit.edu	37	8	119391884	119391884	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:119391884C>T	uc003yom.2	-	4	507	c.378G>A	c.(376-378)CAG>CAA	p.Q126Q	SAMD12_uc010mda.1_Silent_p.Q126Q|SAMD12_uc010mdb.1_RNA	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	126	SAM.									ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			GGAGGTTCTCCTGGGCAATCC	0.478													11	29					0	0	0.001368	0	0
WDYHV1	55093	broad.mit.edu	37	8	124448771	124448771	+	Missense_Mutation	SNP	C	T	T	rs145997552		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:124448771C>T	uc003yqn.1	+	4	438	c.313C>T	c.(313-315)CCC>TCC	p.P105S	WDYHV1_uc011lij.1_Missense_Mutation_p.P45S|WDYHV1_uc003yqo.1_Intron	NM_018024	NP_060494	Q96HA8	NTAQ1_HUMAN	WDYHV motif containing 1	105					protein modification process	cytosol|nucleus	protein binding|protein N-terminal glutamine amidohydrolase activity	p.P105S(1)		ovary(1)|skin(1)	2						CTTGCCATTTCCCTGCCTCTT	0.383													12	44					0	0	0.001368	0	0
FER1L6	654463	broad.mit.edu	37	8	125072424	125072424	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:125072424C>A	uc003yqw.2	+	23	3084	c.2878C>A	c.(2878-2880)CCT>ACT	p.P960T	uc003yqy.1_RNA	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	960	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GCGGTAGGTTCCTCCTTCTGG	0.547													13	58					1.49906e-05	1.89317e-05	0.002450	1	0
ASAP1	50807	broad.mit.edu	37	8	131127951	131127951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:131127951G>A	uc003yta.1	-	22	2123	c.2095C>T	c.(2095-2097)CCA>TCA	p.P699S	ASAP1_uc003ysz.1_Missense_Mutation_p.P510S|ASAP1_uc011liw.1_Missense_Mutation_p.P692S	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	699					cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						TGGACGTGTGGATTGAACTTT	0.403													98	55					0	0	0.003610	0	0
LRRC6	23639	broad.mit.edu	37	8	133645158	133645158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:133645158C>T	uc003ytk.2	-	5	555	c.481G>A	c.(481-483)GAC>AAC	p.D161N	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	161	LRRCT.					cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			ACTGAATAGTCCTGCAATGCC	0.373													19	37					0	0	0.006122	0	0
NDRG1	10397	broad.mit.edu	37	8	134274295	134274295	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:134274295G>A	uc003yuh.2	-	5	907	c.321C>T	c.(319-321)CCC>CCT	p.P107P	NDRG1_uc003yug.2_Silent_p.P107P|NDRG1_uc010mee.2_Silent_p.P26P|NDRG1_uc010mef.2_Silent_p.P41P|NDRG1_uc011ljh.1_5'UTR|NDRG1_uc011lji.1_Intron	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	107					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			CTCACCCTGCGGGGAAGGAGG	0.582													50	22					0	0	0.003610	0	0
ZFAT	57623	broad.mit.edu	37	8	135669812	135669812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:135669812G>A	uc003yup.2	-	2	363	c.188C>T	c.(187-189)ACC>ATC	p.T63I	ZFAT_uc003yun.2_Missense_Mutation_p.T51I|ZFAT_uc003yuo.2_Missense_Mutation_p.T51I|ZFAT_uc010meh.2_Missense_Mutation_p.T51I|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.T51I|ZFAT_uc010mej.2_Missense_Mutation_p.T63I|ZFAT_uc003yur.2_Missense_Mutation_p.T51I	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	63					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			ACCATCTCCGGTTTTGCTTGA	0.502													35	22					0	0	0.002836	0	0
COL22A1	169044	broad.mit.edu	37	8	139793219	139793219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:139793219G>A	uc003yvd.2	-	13	2048	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	534	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CAGGCCCAGGGAACCCTAAAG	0.532										HNSCC(7;0.00092)			12	66					0	0	0.001855	0	0
KCNK9	51305	broad.mit.edu	37	8	140630522	140630522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:140630522C>T	uc003yvf.1	-	2	1168	c.1104G>A	c.(1102-1104)ATG>ATA	p.M368I	KCNK9_uc003yvg.1_Missense_Mutation_p.M368I|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	368	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			TCCGGCGTTTCATCAGCCTCT	0.468													66	50					0	0	0.003610	0	0
FLJ43860	389690	broad.mit.edu	37	8	142487552	142487552	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:142487552G>A	uc003ywi.2	-	12	1477	c.1396C>T	c.(1396-1398)CTG>TTG	p.L466L	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	466							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			CGCGTGCACAGAGTGTCCTGG	0.667													39	24					0	0	0.007835	0	0
NAPRT1	93100	broad.mit.edu	37	8	144657512	144657512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:144657512G>A	uc003yym.3	-	11	1320	c.1295C>T	c.(1294-1296)TCT>TTT	p.S432F	C8orf73_uc010mff.2_5'Flank|C8orf73_uc010mfg.1_5'Flank|NAPRT1_uc003yyn.3_Missense_Mutation_p.S432F|NAPRT1_uc011lkh.1_Missense_Mutation_p.S432F|NAPRT1_uc003yyo.3_Missense_Mutation_p.S432F	NM_145201	NP_660202	Q6XQN6	PNCB_HUMAN	nicotinate phosphoribosyltransferase domain	432					nicotinamide metabolic process|nicotinate nucleotide salvage|response to oxidative stress|water-soluble vitamin metabolic process	cytosol|Golgi apparatus|nucleus	nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CATGAGTGGAGACCCTGTGTG	0.662													38	27					0	0	0.006999	0	0
MAPK15	225689	broad.mit.edu	37	8	144804000	144804000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:144804000C>T	uc003yzj.2	+	13	1449	c.1408C>T	c.(1408-1410)CGG>TGG	p.R470W		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	470					protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GGCCCTGATCCGGGGTGACTG	0.587													29	19					0	0	0.001786	0	0
OPLAH	26873	broad.mit.edu	37	8	145110730	145110730	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:145110730G>A	uc003zar.3	-	16	2291	c.2209C>T	c.(2209-2211)CAG>TAG	p.Q737*	OPLAH_uc003zas.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	737							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	ATGGACAGCTGGATAGGGTCC	0.647													4	3					0	0	0.000602	0	0
LRRC24	441381	broad.mit.edu	37	8	145748093	145748093	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr8:145748093C>T	uc003zdm.2	-	5	1440	c.1308G>A	c.(1306-1308)CGG>CGA	p.R436R	LRRC24_uc003zdn.2_Silent_p.R433R|LRRC14_uc003zdk.1_3'UTR|LRRC14_uc003zdl.1_3'UTR|LRRC14_uc003zdo.2_RNA	NM_001024678	NP_001019849	Q50LG9	LRC24_HUMAN	leucine rich repeat containing 24 precursor	436						integral to membrane					0	all_cancers(97;5.56e-11)|all_epithelial(106;3.54e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.48e-41)|Epithelial(56;1.85e-40)|all cancers(56;3.59e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0483)|Colorectal(110;0.055)			CCGGAGGCCCCCGCGCCTTTT	0.697													5	3					0	0	0.001168	0	0
SLC1A1	6505	broad.mit.edu	37	9	4572216	4572216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:4572216G>A	uc003zij.1	+	7	831	c.595G>A	c.(595-597)GAA>AAA	p.E199K	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	199	Extracellular (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	CAAAACAAAGGAATACAAAAT	0.368													34	39					0	0	0.006230	0	0
SLC1A1	6505	broad.mit.edu	37	9	4576755	4576755	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:4576755C>T	uc003zij.1	+	10	1421	c.1185C>T	c.(1183-1185)ATC>ATT	p.I395I	C9orf68_uc003zik.2_Intron	NM_004170	NP_004161	P43005	EAA3_HUMAN	solute carrier family 1, member 1	395	Helical; (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0		Acute lymphoblastic leukemia(2;0.0359)|Breast(48;0.0457)		GBM - Glioblastoma multiforme(50;0.0124)|Lung(218;0.183)	L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)	GGCAGATCATCACCATCAGGT	0.488													13	48					0	0	0.002450	0	0
INSL6	11172	broad.mit.edu	37	9	5185431	5185431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:5185431C>T	uc003zix.2	-	1	188	c.172G>A	c.(172-174)GAA>AAA	p.E58K		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	58						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		AAAGGGGTTTCCTCCTCGAAA	0.577													67	20					0	0	0.003610	0	0
GLDC	2731	broad.mit.edu	37	9	6589236	6589236	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:6589236G>A	uc003zkc.2	-	12	1732	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F		NM_000170	NP_000161	P23378	GCSP_HUMAN	glycine dehydrogenase (decarboxylating)	513					glycine catabolic process	mitochondrion	electron carrier activity|glycine dehydrogenase (decarboxylating) activity|lyase activity|pyridoxal phosphate binding			ovary(2)	2		Acute lymphoblastic leukemia(23;0.161)		GBM - Glioblastoma multiforme(50;0.0421)|Lung(218;0.134)	Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	TGGTCCTCTTGAACACAGACC	0.502													35	6					0	0	0.006999	0	0
PTPRD	5789	broad.mit.edu	37	9	8460539	8460539	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:8460539G>A	uc003zkk.2	-	32	4458	c.3747C>T	c.(3745-3747)CCC>CCT	p.P1249P	PTPRD_uc003zkp.2_Silent_p.P838P|PTPRD_uc003zkq.2_Silent_p.P838P|PTPRD_uc003zkr.2_Silent_p.P833P|PTPRD_uc003zks.2_Silent_p.P828P|PTPRD_uc003zkl.2_Silent_p.P1240P|PTPRD_uc003zkm.2_Silent_p.P1236P|PTPRD_uc003zkn.2_Silent_p.P838P|PTPRD_uc003zko.2_Silent_p.P835P	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1249	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TTGACACCACGGGGTCGGAGT	0.438										TSP Lung(15;0.13)			18	4					0	0	0.001523	0	0
FREM1	158326	broad.mit.edu	37	9	14819287	14819287	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:14819287G>A	uc003zlm.2	-	14	3081	c.2491C>T	c.(2491-2493)CCT>TCT	p.P831S	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	831	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GAATTTAGAGGAAATCCATTC	0.418													22	7					0	0	0.003954	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18777484	18777484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:18777484C>T	uc003zne.3	+	19	3384	c.3257C>T	c.(3256-3258)TCC>TTC	p.S1086F		NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1086						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGGAACCTCTCCCAGCAGCCC	0.672													7	1					0	0	0.003080	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18892396	18892396	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:18892396G>A	uc003zne.3	+	26	4780	c.4653G>A	c.(4651-4653)GTG>GTA	p.V1551V	ADAMTSL1_uc003znf.3_Silent_p.V252V	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1551	TSP type-1 8.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		GGTGGATGGTGACCTCCTGGT	0.612													13	1					0	0	0.001368	0	0
IFNA14	3448	broad.mit.edu	37	9	21239695	21239695	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:21239695G>A	uc010mis.2	-	1	284	c.240C>T	c.(238-240)CTC>CTT	p.L80L	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	80					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TCATCTCATGGAGGACAGAGA	0.458													62	12					0	0	0.003610	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971017	21971017	+	Missense_Mutation	SNP	G	A	A	rs121913386		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:21971017G>A	uc003zpk.2	-	2	553	c.341C>T	c.(340-342)CCC>CTC	p.P114L	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Silent_p.A169A	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	114	ANK 4.		P -> L (in non-small cell lung carcinoma).|P -> S (found in some patients with melanoma; loss of CDK4 binding).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.P114L(21)|p.?(13)|p.P114H(3)|p.H83fs*2(2)|p.P114S(2)|p.A68fs*3(1)|p.P114P(1)|p.V115fs*11(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CAGGTCCACGGGCAGACGGCC	0.731	P114L(SKMEL30_SKIN)|P114L(WM983B_SKIN)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			119	30					0	0	0.003610	0	0
ELAVL2	1993	broad.mit.edu	37	9	23704940	23704940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:23704940G>A	uc003zpu.2	-	4	738	c.463C>T	c.(463-465)CGT>TGT	p.R155C	ELAVL2_uc003zps.2_Missense_Mutation_p.R155C|ELAVL2_uc003zpt.2_Missense_Mutation_p.R155C|ELAVL2_uc003zpv.2_Missense_Mutation_p.R155C|ELAVL2_uc003zpw.2_Missense_Mutation_p.R155C	NM_004432	NP_004423	Q12926	ELAV2_HUMAN	ELAV (embryonic lethal, abnormal vision,	155	RRM 2.				regulation of transcription, DNA-dependent		mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(1;2.18e-156)|Lung(42;2.15e-28)|LUSC - Lung squamous cell carcinoma(38;1.02e-19)		ACAAGAATACGAGAAGTAATA	0.418													50	15					0	0	0.003610	0	0
PIGO	84720	broad.mit.edu	37	9	35089444	35089444	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:35089444G>A	uc003zwd.2	-	10	3469	c.3073C>T	c.(3073-3075)CTG>TTG	p.L1025L	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Silent_p.L608L|PIGO_uc003zwf.2_Silent_p.L608L|PIGO_uc003zwg.1_3'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	1025	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			GCACAGGCCAGAATCTAGAGG	0.507													55	57					0	0	0.003610	0	0
TLN1	7094	broad.mit.edu	37	9	35699391	35699391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:35699391G>A	uc003zxt.2	-	51	7190	c.6836C>T	c.(6835-6837)TCC>TTC	p.S2279F		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	2279					axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CTCAGTGACGGAACCAGCCAC	0.562													29	12					0	0	0.002445	0	0
FBXO10	26267	broad.mit.edu	37	9	37537208	37537208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:37537208C>T	uc004aab.2	-	3	1367	c.1318G>A	c.(1318-1320)GGG>AGG	p.G440R	FBXO10_uc004aac.2_Missense_Mutation_p.G456R|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	440	PbH1 3.					ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		CCTCCCTTCCCGTCCCGGAAG	0.577													38	4					0	0	0.007835	0	0
SHB	6461	broad.mit.edu	37	9	37955905	37955905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:37955905G>A	uc004aax.2	-	4	1769	c.1201C>T	c.(1201-1203)CCT>TCT	p.P401S		NM_003028	NP_003019	Q15464	SHB_HUMAN	Src homology 2 domain containing adaptor protein	401	Mediates interaction with LAT, FAK1, JAK1 and JAK3.				angiogenesis|apoptosis|cell differentiation|signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity			central_nervous_system(2)|skin(1)	3		all_epithelial(88;0.122)		GBM - Glioblastoma multiforme(29;3.27e-05)|Lung(182;0.0658)		GGGACGGCAGGATCCACCCTT	0.572													16	18					0	0	0.007413	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39140595	39140595	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:39140595C>T	uc004abi.2	-	12	2036	c.1797G>A	c.(1795-1797)GGG>GGA	p.G599G	CNTNAP3_uc004abj.2_Silent_p.G599G|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Silent_p.G599G|CNTNAP3_uc011lqs.1_Silent_p.G506G|CNTNAP3_uc004abl.1_Silent_p.G418G	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	599	Fibrinogen C-terminal.|Extracellular (Potential).				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CAGACGGGTTCCCTCGGTGCT	0.458													42	12					0	0	0.006230	0	0
FAM75A6	389730	broad.mit.edu	37	9	43626716	43626716	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:43626716G>A	uc011lrb.1	-	4	2000	c.1971C>T	c.(1969-1971)TTC>TTT	p.F657F		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	657						integral to membrane					0						TCTCTAGCTGGAACTTCACCT	0.557													89	25					0	0	0.003610	0	0
C9orf135	138255	broad.mit.edu	37	9	72471545	72471545	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:72471545G>A	uc004ahl.2	+	3	401	c.336G>A	c.(334-336)AAG>AAA	p.K112K	C9orf135_uc011lrw.1_Silent_p.K4K|C9orf135_uc010moq.2_Silent_p.K4K|C9orf135_uc011lrx.1_RNA|C9orf135_uc010mop.2_Silent_p.K112K	NM_001010940	NP_001010940	Q5VTT2	CI135_HUMAN	hypothetical protein LOC138255	112	Extracellular (Potential).					integral to membrane				ovary(1)	1						TGAAGAGCAAGGCTTTATTGA	0.358													20	4					0	0	0.002299	0	0
PCSK5	5125	broad.mit.edu	37	9	78803514	78803514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:78803514C>T	uc004ajz.2	+	18	2841	c.2303C>T	c.(2302-2304)TCT>TTT	p.S768F	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Missense_Mutation_p.S42F	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	768	CRM (Cys-rich motif).				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TCCCGGTGCTCTGTCTCCTGT	0.517													33	13					0	0	0.003755	0	0
GCNT1	2650	broad.mit.edu	37	9	79117361	79117361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:79117361C>T	uc010mpf.2	+	3	405	c.64C>T	c.(64-66)CTT>TTT	p.L22F	GCNT1_uc010mpg.2_Missense_Mutation_p.L22F|GCNT1_uc010mph.2_Missense_Mutation_p.L22F|GCNT1_uc004akf.3_Missense_Mutation_p.L22F|GCNT1_uc010mpi.2_Missense_Mutation_p.L22F|GCNT1_uc004akh.3_Missense_Mutation_p.L22F	NM_001490	NP_001481	Q02742	GCNT1_HUMAN	beta-1,3-galactosyl-O-glycosyl-glycoprotein	22	Helical; Signal-anchor for type II membrane protein; (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity				0						CTTTATGGTTCTTGTTTTATC	0.408													30	14					0	0	0.002445	0	0
PRUNE2	158471	broad.mit.edu	37	9	79318674	79318674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:79318674C>T	uc010mpk.2	-	9	7979	c.7855G>A	c.(7855-7857)GAT>AAT	p.D2619N	PRUNE2_uc004akj.3_Missense_Mutation_p.D72N|PRUNE2_uc010mpl.1_Missense_Mutation_p.D72N	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2619					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GATCTCGTATCGCTTTTAGAA	0.483													31	5					0	0	0.007291	0	0
PRUNE2	158471	broad.mit.edu	37	9	79323993	79323993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:79323993G>A	uc010mpk.2	-	8	3321	c.3197C>T	c.(3196-3198)TCC>TTC	p.S1066F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1066					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ATCCTCCATGGAGATATTCTT	0.453													30	32					0	0	0.002836	0	0
UBQLN1	29979	broad.mit.edu	37	9	86281332	86281332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:86281332G>A	uc004amv.2	-	8	1839	c.1265C>T	c.(1264-1266)CCC>CTC	p.P422L	UBQLN1_uc004amw.2_Intron	NM_013438	NP_038466	Q9UMX0	UBQL1_HUMAN	ubiquilin 1 isoform 1	422					apoptosis|regulation of protein ubiquitination|response to hypoxia	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm|proteasome complex	kinase binding				0						AGCAAATAGGGGATTATTCAG	0.383													30	5					0	0	0.002445	0	0
ROR2	4920	broad.mit.edu	37	9	94486623	94486623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:94486623G>A	uc004arj.1	-	9	2352	c.2153C>T	c.(2152-2154)CCC>CTC	p.P718L	ROR2_uc004ari.1_Missense_Mutation_p.P578L	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	718	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						CACCCAGGCGGGACAGTCATC	0.647													33	13					0	0	0.002445	0	0
OMD	4958	broad.mit.edu	37	9	95179207	95179207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:95179207C>T	uc004asd.3	-	2	1003	c.634G>A	c.(634-636)GAA>AAA	p.E212K	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron	NM_005014	NP_005005	Q99983	OMD_HUMAN	osteomodulin precursor	212					cell adhesion	proteinaceous extracellular matrix				ovary(2)	2						ATTAGTTTTTCCATTTTGGCA	0.353			T	USP6	aneurysmal bone cysts								39	8					0	0	0.005524	0	0
SUSD3	203328	broad.mit.edu	37	9	95846965	95846965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:95846965C>T	uc004atb.2	+	5	740	c.704C>T	c.(703-705)CCC>CTC	p.P235L	SUSD3_uc004atc.2_Missense_Mutation_p.P222L	NM_145006	NP_659443	Q96L08	SUSD3_HUMAN	sushi domain containing 3	235	Cytoplasmic (Potential).					integral to membrane				breast(2)|skin(2)|ovary(1)|lung(1)	6						CCCAGACAGCCCCTGCCTGCC	0.637													52	18					0	0	0.003610	0	0
OR13C3	138803	broad.mit.edu	37	9	107298152	107298152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:107298152C>T	uc004bcb.1	-	1	943	c.943G>A	c.(943-945)GGG>AGG	p.G315R		NM_001001961	NP_001001961	Q8NGS6	O13C3_HUMAN	olfactory receptor, family 13, subfamily C,	315	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						GTCACTACCCCATAAAACAGA	0.373													35	13					0	0	0.003755	0	0
OR13C8	138802	broad.mit.edu	37	9	107331676	107331676	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:107331676C>T	uc011lvo.1	+	1	228	c.228C>T	c.(226-228)TCC>TCT	p.S76S		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	76	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ACACAAGTTCCTCTGTCCCAC	0.438													100	27					0	0	0.003610	0	0
OR13C8	138802	broad.mit.edu	37	9	107332173	107332173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:107332173C>T	uc011lvo.1	+	1	725	c.725C>T	c.(724-726)TCA>TTA	p.S242L		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	242	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCCACCTGCTCAGCCCACCTG	0.408													36	12					0	0	0.004878	0	0
ZNF462	58499	broad.mit.edu	37	9	109689948	109689948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:109689948C>T	uc004bcz.2	+	3	4044	c.3755C>T	c.(3754-3756)CCC>CTC	p.P1252L	ZNF462_uc010mto.2_Missense_Mutation_p.P1100L|ZNF462_uc004bda.2_Missense_Mutation_p.P1100L	NM_021224	NP_067047	Q96JM2	ZN462_HUMAN	zinc finger protein 462	1252					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5						CTTGTCTCCCCCTCTAATCTG	0.527													106	67					0	0	0.003610	0	0
SVEP1	79987	broad.mit.edu	37	9	113212404	113212404	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:113212404G>A	uc010mtz.2	-	24	4375	c.4038C>T	c.(4036-4038)GTC>GTT	p.V1346V	SVEP1_uc010mua.1_Silent_p.V1346V	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1346	EGF-like 5; calcium-binding (Potential).				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GACACTCATCGACGTTCTTTC	0.448													152	48					0	0	0.003610	0	0
PAPPA	5069	broad.mit.edu	37	9	119097323	119097323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:119097323G>A	uc004bjn.2	+	13	3962	c.3581G>A	c.(3580-3582)AGA>AAA	p.R1194K	PAPPA_uc011lxp.1_Missense_Mutation_p.R889K|PAPPA_uc011lxq.1_Missense_Mutation_p.R569K	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1194					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						AGCTGCCAGAGAGGGGAGACC	0.622													24	6					0	0	0.003330	0	0
PTGS1	5742	broad.mit.edu	37	9	125140266	125140266	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:125140266G>A	uc004bmg.1	+	3	318	c.183G>A	c.(181-183)ACG>ACA	p.T61T	PTGS1_uc011lys.1_Silent_p.T36T|PTGS1_uc010mwb.1_5'UTR|PTGS1_uc004bmf.1_Silent_p.T61T|PTGS1_uc004bmh.1_5'UTR|PTGS1_uc011lyt.1_5'UTR	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	61	EGF-like.				cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GCACCCGCACGGGCTATTCCG	0.612													24	7					0	0	0.003954	0	0
OR1N1	138883	broad.mit.edu	37	9	125289031	125289031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:125289031G>A	uc004bmn.1	-	1	542	c.542C>T	c.(541-543)CCT>CTT	p.P181L		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						CTTCAGGACAGGAGTGATGTC	0.493													19	3					0	0	0.001523	0	0
OR1N2	138882	broad.mit.edu	37	9	125315593	125315593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:125315593C>T	uc011lyx.1	+	1	145	c.145C>T	c.(145-147)CTT>TTT	p.L49F		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						TGGCATCTTCCTTGGCATGTA	0.527													14	27					0	0	0.003163	0	0
OR1N2	138882	broad.mit.edu	37	9	125316310	125316310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:125316310G>A	uc011lyx.1	+	1	862	c.862G>A	c.(862-864)GAA>AAA	p.E288K		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	288	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						TACAGAGAGGGAAAGTAGGGC	0.443													8	22					0	0	0.006214	0	0
RC3H2	54542	broad.mit.edu	37	9	125617595	125617595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:125617595G>A	uc010mwc.1	-	15	2924	c.2683C>T	c.(2683-2685)CCC>TCC	p.P895S	RC3H2_uc004bnc.2_RNA|RC3H2_uc004bnd.1_Missense_Mutation_p.P895S|RC3H2_uc004bne.3_Missense_Mutation_p.P895S	NM_001100588	NP_001094058	Q9HBD1	RC3H2_HUMAN	ring finger and CCCH-type zinc finger domains 2	895						cell surface|endomembrane system|membrane|membrane fraction|perinuclear region of cytoplasm	DNA binding|zinc ion binding			ovary(2)|lung(2)	4						TCACTAAAGGGAATTATTGGA	0.433													24	18					0	0	0.003954	0	0
CRB2	286204	broad.mit.edu	37	9	126129490	126129490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:126129490G>A	uc004bnx.1	+	5	886	c.794G>A	c.(793-795)TGT>TAT	p.C265Y	CRB2_uc004bnw.1_Missense_Mutation_p.C265Y	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	265	Extracellular (Potential).|EGF-like 6.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GAGGACGAGTGTGCATCGAGC	0.687													60	7					0	0	0.003610	0	0
TTC16	158248	broad.mit.edu	37	9	130480033	130480033	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:130480033C>T	uc004brq.1	+	4	475	c.408C>T	c.(406-408)ACC>ACT	p.T136T	PTRH1_uc004brm.2_5'Flank|PTRH1_uc004bro.2_5'Flank|PTRH1_uc010mxm.2_5'Flank|PTRH1_uc011mah.1_Intron|TTC16_uc011mai.1_Silent_p.T123T|TTC16_uc004brr.1_Intron|TTC16_uc010mxn.1_5'Flank	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	136	TPR 3.						binding				0						AGCGCCTCACCTTTGTGCTCT	0.637													31	13					0	0	0.004289	0	0
TTC16	158248	broad.mit.edu	37	9	130493071	130493071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:130493071G>A	uc004brq.1	+	14	2076	c.2009G>A	c.(2008-2010)AGA>AAA	p.R670K	TTC16_uc011mai.1_Missense_Mutation_p.R657K|TTC16_uc004brr.1_3'UTR|TTC16_uc010mxn.1_Missense_Mutation_p.R266K	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	670							binding				0						CATGGTCCCAGAAAAATCAAG	0.577													41	6					0	0	0.006999	0	0
BAT2L1	84726	broad.mit.edu	37	9	134321935	134321935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:134321935C>T	uc004can.3	+	6	816	c.761C>T	c.(760-762)TCT>TTT	p.S254F	BAT2L1_uc010mzj.1_5'Flank|BAT2L1_uc004cam.1_Missense_Mutation_p.S254F	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	254							protein binding				0						AAGGACCCCTCTCTCCGCCCG	0.562													18	2					0	0	0.006122	0	0
COL5A1	1289	broad.mit.edu	37	9	137708893	137708893	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:137708893G>A	uc004cfe.2	+	53	4526	c.4144G>A	c.(4144-4146)GAA>AAA	p.E1382K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1382	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCCTACTGGTGAACCAGGTCC	0.547													38	12					0	0	0.002522	0	0
KIAA0649	9858	broad.mit.edu	37	9	138378553	138378553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:138378553G>A	uc004cfr.1	+	4	2746	c.2197G>A	c.(2197-2199)GAG>AAG	p.E733K		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	733						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		GCACTTCTTGGAGCAGCTGGG	0.612													7	1					0	0	0.001984	0	0
NOTCH1	4851	broad.mit.edu	37	9	139393586	139393586	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:139393586G>A	uc004chz.2	-	32	6060	c.6060C>T	c.(6058-6060)GAC>GAT	p.D2020D		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2020	ANK 3.|Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CGGCGTTGACGTCGGCGTGTG	0.682			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			59	11					0	0	0.003610	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071563	141071563	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:141071563C>T	uc004com.2	+	4	1227	c.966C>T	c.(964-966)TTC>TTT	p.F322F	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GCAAGGCCTTCCTCCACTGGT	0.502													5	78					0	0	0.001984	0	0
ARSF	416	broad.mit.edu	37	X	3002412	3002412	+	Missense_Mutation	SNP	C	T	T	rs146302062	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:3002412C>T	uc004cre.1	+	6	756	c.535C>T	c.(535-537)CGT>TGT	p.R179C	ARSF_uc004crf.1_Missense_Mutation_p.R179C	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	179						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GGACCCCTCTCGTAACACGGA	0.537													14	56					0	0	0.001855	0	0
MXRA5	25878	broad.mit.edu	37	X	3235706	3235706	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:3235706C>T	uc004crg.3	-	6	6173	c.6016G>A	c.(6016-6018)GAA>AAA	p.E2006K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2006	Ig-like C2-type 4.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GTCCGGTTTTCGTGCAGGGTG	0.622													30	24					0	0	0.002445	0	0
MXRA5	25878	broad.mit.edu	37	X	3239627	3239627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:3239627C>T	uc004crg.3	-	5	4256	c.4099G>A	c.(4099-4101)GAA>AAA	p.E1367K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1367						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GAGGATTCTTCCTTAAATTCT	0.468													17	10					0	0	0.004007	0	0
MXRA5	25878	broad.mit.edu	37	X	3240467	3240467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:3240467C>T	uc004crg.3	-	5	3416	c.3259G>A	c.(3259-3261)GGC>AGC	p.G1087S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1087						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CTCTCTTGGCCCTCACTCTCA	0.473													36	11					0	0	0.007835	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821359	5821359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:5821359C>T	uc010ndh.2	-	5	1861	c.1360G>A	c.(1360-1362)GTG>ATG	p.V454M	NLGN4X_uc004crp.2_Missense_Mutation_p.V474M|NLGN4X_uc004crq.2_Missense_Mutation_p.V454M|NLGN4X_uc010ndi.2_Missense_Mutation_p.V491M|NLGN4X_uc004crr.2_Missense_Mutation_p.V454M|NLGN4X_uc010ndj.2_Missense_Mutation_p.V454M	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	454	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GCGGTGGCCACGGCGGGGGCC	0.597													8	21					0	0	0.001368	0	0
NLGN4X	57502	broad.mit.edu	37	X	5821665	5821665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:5821665C>T	uc010ndh.2	-	5	1555	c.1054G>A	c.(1054-1056)GAC>AAC	p.D352N	NLGN4X_uc004crp.2_Missense_Mutation_p.D372N|NLGN4X_uc004crq.2_Missense_Mutation_p.D352N|NLGN4X_uc010ndi.2_Missense_Mutation_p.D389N|NLGN4X_uc004crr.2_Missense_Mutation_p.D352N|NLGN4X_uc010ndj.2_Missense_Mutation_p.D352N	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	352	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						ATCTGGGGGTCGTCTGGGATG	0.597													12	41					0	0	0.004007	0	0
KAL1	3730	broad.mit.edu	37	X	8538559	8538559	+	Missense_Mutation	SNP	C	T	T	rs143406724		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:8538559C>T	uc004csf.2	-	7	1193	c.1043G>A	c.(1042-1044)CGG>CAG	p.R348Q		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	348	Fibronectin type-III 2.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						AGTCTTTCTCCGCTTCTTCTT	0.512													3	14					0	0	0.000248	0	0
SHROOM2	357	broad.mit.edu	37	X	9862717	9862717	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:9862717G>A	uc004csu.1	+	4	859	c.769G>A	c.(769-771)GAC>AAC	p.D257N		NM_001649	NP_001640	Q13796	SHRM2_HUMAN	apical protein of Xenopus-like	257					apical protein localization|brain development|cell migration|cell morphogenesis|cellular pigment accumulation|ear development|establishment of melanosome localization|eye pigment granule organization|lens morphogenesis in camera-type eye|melanosome organization	apical plasma membrane|cell-cell adherens junction|microtubule|tight junction	actin filament binding|beta-catenin binding|ligand-gated sodium channel activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8		Hepatocellular(5;0.000888)				GGCCGCAGGCGACCCTCAGGG	0.667													9	7					0	0	0.004482	0	0
CLCN4	1183	broad.mit.edu	37	X	10174571	10174571	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:10174571C>T	uc004csy.3	+	7	1159	c.729C>T	c.(727-729)TCC>TCT	p.S243S	CLCN4_uc011mid.1_Silent_p.S149S	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	243	Helical; (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GCCTTTTCTCCAAGTACAGCA	0.567													11	17					0	0	0.000673	0	0
CLCN4	1183	broad.mit.edu	37	X	10181893	10181893	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:10181893C>T	uc004csy.3	+	11	2179	c.1749C>T	c.(1747-1749)TTC>TTT	p.F583F	CLCN4_uc011mid.1_Silent_p.F489F	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	583	Cytoplasmic (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						GGTACCCTTTCCTTGACGTGA	0.607													23	24					0	0	0.004656	0	0
AMELX	265	broad.mit.edu	37	X	11316691	11316691	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:11316691C>T	uc004cut.2	+	5	236	c.168C>T	c.(166-168)CCC>CCT	p.P56P	ARHGAP6_uc004cup.1_Intron|ARHGAP6_uc004cuo.1_Intron|ARHGAP6_uc004cur.1_Intron|ARHGAP6_uc004cun.1_Intron|ARHGAP6_uc011mif.1_Intron|AMELX_uc004cus.2_Silent_p.P70P|AMELX_uc004cuu.2_Silent_p.P40P	NM_001142	NP_001133	Q99217	AMELX_HUMAN	amelogenin (X chromosome) isoform 1 precursor	56			P -> T (in AIH1).		cell adhesion|cell proliferation|chondrocyte differentiation|enamel mineralization|epithelial to mesenchymal transition|ion homeostasis|odontogenesis of dentine-containing tooth|osteoblast differentiation|positive regulation of collagen biosynthetic process|positive regulation of tooth mineralization|signal transduction	proteinaceous extracellular matrix	cell surface binding|growth factor activity|hydroxyapatite binding|identical protein binding|structural constituent of tooth enamel				0						GTTACGAGCCCATGGGTGGAT	0.567													25	69					0	0	0.006320	0	0
FRMPD4	9758	broad.mit.edu	37	X	12736223	12736223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:12736223G>A	uc004cuz.1	+	16	3784	c.3278G>A	c.(3277-3279)TGG>TAG	p.W1093*	FRMPD4_uc011mij.1_Nonsense_Mutation_p.W1085*	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1093					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						AGTCAAAGATGGTATGTGGCC	0.493													21	83					0	0	0.002299	0	0
EGFL6	25975	broad.mit.edu	37	X	13636123	13636123	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:13636123A>T	uc004cvi.2	+	8	1293	c.1053A>T	c.(1051-1053)AAA>AAT	p.K351N	EGFL6_uc004cvj.2_Missense_Mutation_p.K351N|EGFL6_uc011mik.1_Missense_Mutation_p.K252N	NM_015507	NP_056322	Q8IUX8	EGFL6_HUMAN	epidermal growth factor-like protein 6	351	Potential.				cell adhesion|cell cycle|cell differentiation|multicellular organismal development	basement membrane|extracellular space|membrane	calcium ion binding|integrin binding			breast(2)	2						GAGAAGAGAAAGCCCTGAAGA	0.383													15	42					0	0	0.003163	0	0
MAP3K15	389840	broad.mit.edu	37	X	19379479	19379479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:19379479C>T	uc004czk.1	-	29	3897	c.2260G>A	c.(2260-2262)GAT>AAT	p.D754N	MAP3K15_uc004czj.1_Missense_Mutation_p.D714N|PDHA1_uc004czg.3_3'UTR|PDHA1_uc004czh.3_3'UTR|PDHA1_uc011mjc.1_3'UTR|PDHA1_uc011mjd.1_3'UTR|PDHA1_uc010nfk.2_3'UTR|PDHA1_uc010nfl.2_3'UTR|MAP3K15_uc004czi.1_Missense_Mutation_p.D213N	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1279							ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					TATCTTAGATCTTCCTTAGTG	0.363													8	28					0	0	0.004482	0	0
MAP3K15	389840	broad.mit.edu	37	X	19398347	19398347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:19398347C>T	uc004czk.1	-	20	2542	c.905G>A	c.(904-906)GGA>GAA	p.G302E	MAP3K15_uc004czj.1_Missense_Mutation_p.G262E	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	827	Protein kinase.						ATP binding|MAP kinase kinase kinase activity|metal ion binding			ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					GGCACCATATCCGCGAGGCCC	0.547													6	4					0	0	0.001168	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19560173	19560173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:19560173G>A	uc004czm.2	-	16	2078	c.1762C>T	c.(1762-1764)CCG>TCG	p.P588S	SH3KBP1_uc011mje.1_Missense_Mutation_p.P327S|SH3KBP1_uc011mjf.1_Missense_Mutation_p.P350S|SH3KBP1_uc004czl.2_Missense_Mutation_p.P551S|SH3KBP1_uc010nfm.2_Missense_Mutation_p.P33S	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	588					apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						AACAGAGACGGGGAGTTGGCT	0.657													16	48					0	0	0.006122	0	0
SMS	6611	broad.mit.edu	37	X	21985355	21985355	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:21985355C>T	uc004dag.2	+	2	192	c.91C>T	c.(91-93)CAG>TAG	p.Q31*	SMS_uc011mjq.1_5'UTR|SMS_uc004daf.1_Nonsense_Mutation_p.Q31*	NM_004595	NP_004586	P52788	SPSY_HUMAN	spermine synthase	31					methionine metabolic process|spermine biosynthetic process	cytosol	spermidine synthase activity|spermine synthase activity			ovary(1)	1					Spermine(DB00127)	GTCCATTTTCCAGGAGCAGGG	0.527													10	34					0	0	0.006214	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398358	23398358	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:23398358C>T	uc004dal.3	+	2	1010	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	PTCHD1_uc010nfu.1_Silent_p.F334F	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	334	Helical; (Potential).|SSD.				cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						GAGTCCCTTTCGTCATGCTAG	0.483													23	57					0	0	0.003330	0	0
FAM48B2	170067	broad.mit.edu	37	X	24330728	24330728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:24330728C>T	uc011mjw.1	-	1	705	c.705G>A	c.(703-705)ATG>ATA	p.M235I		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	235											0						GGCACTGTTCCATCGGGTCGG	0.537													34	74					0	0	0.003755	0	0
PCYT1B	9468	broad.mit.edu	37	X	24637202	24637202	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:24637202C>T	uc004dbi.2	-	2	351	c.118_splice	c.e2-1	p.T40_splice	PCYT1B_uc004dbk.3_Splice_Site_p.T40_splice|PCYT1B_uc004dbj.2_Splice_Site_p.T22_splice	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta							endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	CAGTCAGGGTCTAGAAGGGAG	0.463													7	21					0	0	0.004482	0	0
ARX	170302	broad.mit.edu	37	X	25033674	25033674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:25033674C>T	uc004dbp.3	-	1	392	c.181G>A	c.(181-183)GAA>AAA	p.E61K		NM_139058	NP_620689	Q96QS3	ARX_HUMAN	aristaless related homeobox	61						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ACGGCCTTTTCCGGGTCGGCG	0.627													7	19					0	0	0.004482	0	0
MAGEB2	4113	broad.mit.edu	37	X	30237154	30237154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:30237154C>T	uc004dbz.2	+	2	560	c.457C>T	c.(457-459)CTC>TTC	p.L153F		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	153	MAGE.						protein binding			ovary(1)	1						CCCTGAGATCCTCAAGAAAGC	0.453													4	12					0	0	0.000602	0	0
MAGEB1	4112	broad.mit.edu	37	X	30269109	30269109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:30269109G>A	uc004dcc.2	+	4	819	c.499G>A	c.(499-501)GAA>AAA	p.E167K	MAGEB1_uc004dcd.2_Missense_Mutation_p.E167K|MAGEB1_uc004dce.2_Missense_Mutation_p.E167K	NM_002363	NP_002354	P43366	MAGB1_HUMAN	melanoma antigen family B, 1	167	MAGE.										0						TGATTTGAAGGAAGACAACCC	0.488													9	5					0	0	0.006214	0	0
CXorf21	80231	broad.mit.edu	37	X	30578350	30578350	+	Silent	SNP	A	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:30578350A>T	uc004dcg.1	-	3	399	c.123T>A	c.(121-123)CTT>CTA	p.L41L		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	41										ovary(1)	1						AGGAATAGGAAAGGGTAGCAA	0.458													42	40					0	0	0.002852	0	0
DMD	1756	broad.mit.edu	37	X	31341755	31341755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:31341755C>T	uc004dda.1	-	62	9428	c.9184G>A	c.(9184-9186)GAG>AAG	p.E3062K	DMD_uc004dcq.1_Missense_Mutation_p.E333K|DMD_uc004dcr.1_Missense_Mutation_p.E602K|DMD_uc004dcs.1_Missense_Mutation_p.E602K|DMD_uc004dct.1_Missense_Mutation_p.E602K|DMD_uc004dcu.1_Missense_Mutation_p.E602K|DMD_uc004dcv.1_Missense_Mutation_p.E602K|DMD_uc004dcw.2_Missense_Mutation_p.E1718K|DMD_uc004dcx.2_Missense_Mutation_p.E1721K|DMD_uc004dcz.2_Missense_Mutation_p.E2939K|DMD_uc004dcy.1_Missense_Mutation_p.E3058K|DMD_uc004ddb.1_Missense_Mutation_p.E3054K	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	3062	Interaction with SYNM (By similarity).|WW.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ATGGCTCTCTCCCAGGGACCC	0.408													4	17					0	0	0.000602	0	0
DMD	1756	broad.mit.edu	37	X	32472947	32472947	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:32472947G>A	uc004dda.1	-	26	3679	c.3435C>T	c.(3433-3435)GTC>GTT	p.V1145V	DMD_uc004dcz.2_Silent_p.V1022V|DMD_uc004dcy.1_Silent_p.V1141V|DMD_uc004ddb.1_Silent_p.V1137V|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1145	Spectrin 7.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TTCTGGCATAGACCTTCCACA	0.363													4	15					0	0	0.000602	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820742	35820742	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:35820742C>T	uc010ngt.1	+	2	708	c.429C>T	c.(427-429)ATC>ATT	p.I143I		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	143	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						TGAAGATTATCATCAAAGATG	0.448													12	43					0	0	0.000978	0	0
CXorf22	170063	broad.mit.edu	37	X	35984828	35984828	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:35984828C>T	uc004ddj.2	+	9	1616	c.1557C>T	c.(1555-1557)ATC>ATT	p.I519I	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	519										large_intestine(1)|lung(1)|ovary(1)	3						TCAACAGCATCTGTAAAGCTT	0.363													17	24					0	0	0.001216	0	0
FAM47C	442444	broad.mit.edu	37	X	37029438	37029438	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:37029438C>T	uc004ddl.1	+	1	2969	c.2955C>T	c.(2953-2955)TTC>TTT	p.F985F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	985										ovary(3)	3						TTAAGGATTTCATTCTAAGCA	0.448													51	45					0	0	0.003610	0	0
CYBB	1536	broad.mit.edu	37	X	37664342	37664343	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:37664342_37664343GG>AA	uc004ddr.2	+	10	1296_1297	c.1235_1236GG>AA	c.(1234-1236)GGG>GAA	p.G412E	CYBB_uc011mkf.1_Missense_Mutation_p.G380E|CYBB_uc011mkg.1_Missense_Mutation_p.G145E	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	412	Cytoplasmic (Potential).				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GCAGGGATTGGGGTCACACCCT	0.48													4	8					0	0	0.004672	0	0
SYTL5	94122	broad.mit.edu	37	X	37984626	37984626	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:37984626G>A	uc004ddu.2	+	17	2451	c.1917G>A	c.(1915-1917)TGG>TGA	p.W639*	SYTL5_uc004ddv.2_Nonsense_Mutation_p.W639*|SYTL5_uc004ddx.2_Nonsense_Mutation_p.W661*	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	639	C2 2.				intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						ACCCTCAGTGGAATCATACAT	0.418													4	27					0	0	0.000248	0	0
RPGR	6103	broad.mit.edu	37	X	38146214	38146214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:38146214C>T	uc004ded.1	-	15	2206	c.2038G>A	c.(2038-2040)GAC>AAC	p.D680N	RPGR_uc004deb.2_Intron|RPGR_uc004dea.2_Intron|RPGR_uc004dec.2_Intron	NM_001034853	NP_001030025	Q92834	RPGR_HUMAN	retinitis pigmentosa GTPase regulator isoform C	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport|response to stimulus|visual perception	Golgi apparatus|photoreceptor outer segment	guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						ctacccttgtctttctccccc	0.209													18	56					0	0	0.006122	0	0
ZNF157	7712	broad.mit.edu	37	X	47272121	47272121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:47272121C>T	uc004dhr.1	+	4	718	c.649C>T	c.(649-651)CCC>TCC	p.P217S		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	217					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGGGGAGAGGCCCTTTGAATG	0.443													8	15					0	0	0.003080	0	0
PORCN	64840	broad.mit.edu	37	X	48372724	48372724	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:48372724C>T	uc010nie.1	+	9	974	c.816C>T	c.(814-816)GGC>GGT	p.G272G	PORCN_uc004djr.1_Silent_p.G267G|PORCN_uc004djs.1_Silent_p.G261G|PORCN_uc004djt.1_Silent_p.G190G|PORCN_uc011mlx.1_Silent_p.G190G|PORCN_uc004dju.1_Silent_p.G130G|PORCN_uc004djv.1_Silent_p.G272G|PORCN_uc004djw.1_Silent_p.G266G	NM_203475	NP_982301	Q9H237	PORCN_HUMAN	porcupine isoform D	272	Helical; (Potential).				Wnt receptor signaling pathway	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(2)|central_nervous_system(1)	3						CGGGGGCTGGCTTTACCGAGG	0.637													6	23					0	0	0.001168	0	0
RBM3	5935	broad.mit.edu	37	X	48433953	48433953	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:48433953C>T	uc004dkf.1	+	3	247	c.108C>T	c.(106-108)GTC>GTT	p.V36V	RBM3_uc004dkd.1_RNA|RBM3_uc004dkg.2_Silent_p.V36V	NM_006743	NP_006734	P98179	RBM3_HUMAN	RNA binding motif protein 3	36	RRM.				positive regulation of translation	dendrite|nucleus	nucleotide binding|RNA binding			ovary(1)	1						TCACAGTGGTCGTTGTCAAGG	0.537													14	29					0	0	0.002450	0	0
GRIPAP1	56850	broad.mit.edu	37	X	48847122	48847122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:48847122G>A	uc004dly.1	-	8	700	c.665C>T	c.(664-666)TCC>TTC	p.S222F	GRIPAP1_uc004dlz.2_Missense_Mutation_p.S112F|GRIPAP1_uc004dma.2_Missense_Mutation_p.S169F	NM_020137	NP_064522	Q4V328	GRAP1_HUMAN	GRIP1 associated protein 1 isoform 1	222	Potential.					early endosome				breast(2)|kidney(1)	3						CTGCAGCCTGGATGTTTCGGC	0.562													3	15					0	0	0.000248	0	0
MAGED1	9500	broad.mit.edu	37	X	51644984	51644984	+	Silent	SNP	C	T	T	rs149192593		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:51644984C>T	uc004dpm.2	+	12	2390	c.2295C>T	c.(2293-2295)TTC>TTT	p.F765F	MAGED1_uc004dpn.2_Silent_p.F821F|MAGED1_uc004dpo.2_Silent_p.F765F	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	765					apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					GTGCCAACTTCGCTGCCAACT	0.527										Multiple Myeloma(10;0.10)			4	21					0	0	0.000248	0	0
SSX8	280659	broad.mit.edu	37	X	52662414	52662414	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:52662414G>A	uc011mob.1	+	8		c.863G>A				NR_027250				Homo sapiens cDNA FLJ56587 complete cds, highly similar to Protein SSX8.												0						TCAGCCTGGGGGATATGACAC	0.522													15	12					0	0	0.004007	0	0
HUWE1	10075	broad.mit.edu	37	X	53619423	53619423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:53619423C>T	uc004dsp.2	-	33	4309	c.3907G>A	c.(3907-3909)GAT>AAT	p.D1303N	HUWE1_uc004dsn.2_Missense_Mutation_p.D128N	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1303					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TGCCCTGTATCCTCTTCTCCT	0.562													24	68					0	0	0.006320	0	0
PHF8	23133	broad.mit.edu	37	X	54044242	54044242	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:54044242C>T	uc004dsu.2	-	5	487	c.414G>A	c.(412-414)GTG>GTA	p.V138V	PHF8_uc004dst.2_Silent_p.V102V|PHF8_uc004dsv.2_5'UTR|PHF8_uc004dsw.2_Silent_p.V102V|PHF8_uc004dsy.2_Silent_p.V102V	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	138					brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						GCTTCAGAATCACTTCATCTG	0.542													9	23					0	0	0.004482	0	0
FAM120C	54954	broad.mit.edu	37	X	54107815	54107815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:54107815G>A	uc004dsz.3	-	14	3001	c.2918C>T	c.(2917-2919)TCC>TTC	p.S973F	FAM120C_uc011moh.1_Missense_Mutation_p.P836S	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	973										ovary(1)|central_nervous_system(1)	2						GCCCCTGGAGGATCTGCTGCC	0.552													15	42					0	0	0.004990	0	0
WNK3	65267	broad.mit.edu	37	X	54337606	54337606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:54337606C>T	uc004dtd.1	-	3	1095	c.656G>A	c.(655-657)GGA>GAA	p.G219E	WNK3_uc004dtc.1_Missense_Mutation_p.G219E	NM_001002838	NP_001002838	Q9BYP7	WNK3_HUMAN	WNK lysine deficient protein kinase 3 isoform 2	219	Protein kinase.				intracellular protein kinase cascade|positive regulation of establishment of protein localization in plasma membrane|positive regulation of peptidyl-threonine phosphorylation|positive regulation of rubidium ion transmembrane transporter activity|positive regulation of rubidium ion transport|positive regulation of sodium ion transmembrane transporter activity|positive regulation of sodium ion transport|protein autophosphorylation	adherens junction|tight junction	ATP binding|protein binding|protein serine/threonine kinase activity|rubidium ion transmembrane transporter activity|sodium ion transmembrane transporter activity			lung(4)|ovary(3)|kidney(2)|central_nervous_system(2)	11						ACATTTCTTTCCTTTTAATAT	0.373													8	17					0	0	0.003080	0	0
ITIH5L	347365	broad.mit.edu	37	X	54823447	54823447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:54823447G>A	uc004dtj.2	-	2	215	c.185C>T	c.(184-186)CCA>CTA	p.P62L		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	62	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						TTCAGCATGTGGATTAAACAG	0.473													13	37					0	0	0.001855	0	0
ALAS2	212	broad.mit.edu	37	X	55047648	55047648	+	Missense_Mutation	SNP	C	T	T	rs137852308		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:55047648C>T	uc004dua.3	-	5	613	c.475G>A	c.(475-477)GAT>AAT	p.D159N	ALAS2_uc004dub.3_Missense_Mutation_p.D146N|ALAS2_uc004dud.3_Missense_Mutation_p.D122N	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	159			D -> Y (in XLSA).		cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	TAGGTGTGATCCTGTTTCTTC	0.453													36	23					0	0	0.006230	0	0
PAGE2B	389860	broad.mit.edu	37	X	55103885	55103885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:55103885G>A	uc004due.2	+	4	299	c.247G>A	c.(247-249)GAG>AAG	p.E83K		NM_001015038	NP_001015038	Q5JRK9	GGEE3_HUMAN	P antigen family, member 2B	83											0						GATAGAGGATGAGCCTGGAGA	0.403													28	28					0	0	0.003271	0	0
MAGEH1	28986	broad.mit.edu	37	X	55479045	55479045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:55479045C>T	uc004dum.2	+	1	508	c.238C>T	c.(238-240)CCC>TCC	p.P80S		NM_014061	NP_054780	Q9H213	MAGH1_HUMAN	melanoma antigen, family H, 1 protein	80	MAGE.				apoptosis					ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						GCCTTCAGTGCCCCGGAGCAA	0.567													8	19					0	0	0.004482	0	0
FOXR2	139628	broad.mit.edu	37	X	55650474	55650474	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:55650474C>T	uc004duo.2	+	1	642	c.330C>T	c.(328-330)TTC>TTT	p.F110F		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	110					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						TTTCTCCTTTCCCTCAGCCCC	0.532													5	13					0	0	0.000602	0	0
MTMR8	55613	broad.mit.edu	37	X	63444318	63444319	+	Missense_Mutation	DNP	CG	TT	TT	rs144858124		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:63444318_63444319CG>TT	uc011mou.1	-	11	2046_2047	c.1978_1979CG>AA	c.(1978-1980)CGT>AAT	p.R660N	ASB12_uc004dvp.1_Missense_Mutation_p.R276N|ASB12_uc004dvq.1_Missense_Mutation_p.R285N|ASB12_uc004dvr.1_Missense_Mutation_p.R285N	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	Error:Variant_position_missing_in_Q96EF0_after_alignment						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						GACGACTAAACGGACCTGTGAT	0.5													4	22					0	0	0.004672	0	0
MTMR8	55613	broad.mit.edu	37	X	63445469	63445469	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:63445469A>G	uc011mou.1	-	10	1255	c.1187T>C	c.(1186-1188)CTC>CCC	p.L396P	ASB12_uc004dvp.1_Missense_Mutation_p.L12P|ASB12_uc004dvq.1_Missense_Mutation_p.L21P|ASB12_uc004dvr.1_Missense_Mutation_p.L21P	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	Error:Variant_position_missing_in_Q96EF0_after_alignment						nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						GGGCTGCAGGAGGGAGAAGAT	0.483													4	7					0	0	0.000602	0	0
EDA2R	60401	broad.mit.edu	37	X	65824340	65824340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:65824340C>T	uc004dwq.2	-	3	286	c.275G>A	c.(274-276)CGA>CAA	p.R92Q	EDA2R_uc004dwr.2_Missense_Mutation_p.R92Q|EDA2R_uc004dws.2_Missense_Mutation_p.R92Q|EDA2R_uc011mpb.1_RNA|EDA2R_uc011mpc.1_Intron|EDA2R_uc010nkt.1_Missense_Mutation_p.R92Q|EDA2R_uc004dwt.1_Missense_Mutation_p.R92Q	NM_021783	NP_068555	Q9HAV5	TNR27_HUMAN	X-linked ectodysplasin receptor	92	TNFR-Cys 3.|Extracellular (Potential).				cell differentiation|embryo development|epidermis development|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity	integral to plasma membrane	tumor necrosis factor receptor activity			upper_aerodigestive_tract(1)	1						GCGTGTCTTTCGGTAGAACCT	0.512													12	35					0	0	0.001855	0	0
AR	367	broad.mit.edu	37	X	66931342	66931342	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:66931342G>T	uc004dwu.1	+	4	3099	c.1984G>T	c.(1984-1986)GTG>TTG	p.V662L	AR_uc004dwv.1_Missense_Mutation_p.V130L	NM_000044	NP_000035	P10275	ANDR_HUMAN	androgen receptor isoform 1	661	Interaction with HIPK3 (By similarity).|Interaction with MYST2.				cell death|cell growth|cell proliferation|cell-cell signaling|negative regulation of apoptosis|negative regulation of integrin biosynthetic process|positive regulation of cell proliferation|positive regulation of integrin biosynthetic process|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|regulation of establishment of protein localization in plasma membrane|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transport	cytoplasm|nuclear chromatin|nucleoplasm	androgen binding|androgen receptor activity|beta-catenin binding|enzyme binding|ligand-regulated transcription factor activity|protein dimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(3)|lung(2)|breast(2)|central_nervous_system(1)	8	all_cancers(1;0.173)|Prostate(1;2.27e-16)|all_epithelial(1;0.102)	all_lung(315;1.3e-11)			Bicalutamide(DB01128)|Cyproterone(DB04839)|Dromostanolone(DB00858)|Finasteride(DB01216)|Fluoxymesterone(DB01185)|Flutamide(DB00499)|Nandrolone(DB00984)|Nilutamide(DB00665)|Oxandrolone(DB00621)|Testosterone(DB00624)	GAAGCTGACAGTGTCACACAT	0.522									Androgen_Insensitivity_Syndrome				7	6					2.0095e-06	2.54271e-06	0.001984	1	0
STARD8	9754	broad.mit.edu	37	X	67943917	67943917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:67943917G>A	uc004dxa.2	+	13	3280	c.2908G>A	c.(2908-2910)GGC>AGC	p.G970S	STARD8_uc004dxb.2_Missense_Mutation_p.G1050S|STARD8_uc004dxc.3_Missense_Mutation_p.G970S	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	970	START.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						GGAGCCTTGCGGCTTGGGCCG	0.642													9	16					0	0	0.006214	0	0
DLG3	1741	broad.mit.edu	37	X	69669258	69669258	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:69669258A>C	uc004dyi.1	+	3	786	c.458A>C	c.(457-459)CAT>CCT	p.H153P	DLG3_uc004dyj.1_5'Flank	NM_021120	NP_066943	Q92796	DLG3_HUMAN	synapse-associated protein 102 isoform a	153	PDZ 1.				axon guidance|negative regulation of cell proliferation|synaptic transmission	plasma membrane	guanylate kinase activity			large_intestine(1)|pancreas(1)	2	Renal(35;0.156)					GACAATCCCCATGTCCCTGAT	0.567													38	42					0	0	0.005524	0	0
NLGN3	54413	broad.mit.edu	37	X	70375108	70375108	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:70375108G>A	uc004dzd.1	+	4	822	c.622G>A	c.(622-624)GGA>AGA	p.G208R	NLGN3_uc010nlb.1_Missense_Mutation_p.G168R|NLGN3_uc004dzb.2_Missense_Mutation_p.G188R|NLGN3_uc004dzc.2_Missense_Mutation_p.G71R|NLGN3_uc011mps.1_Missense_Mutation_p.G168R|NLGN3_uc004dze.2_Missense_Mutation_p.G6R|NLGN3_uc011mpr.1_Missense_Mutation_p.G168R	NM_018977	NP_061850	Q9NZ94	NLGN3_HUMAN	neuroligin 3	208	Extracellular (Potential).				neuron cell-cell adhesion|positive regulation of synaptogenesis|receptor-mediated endocytosis|social behavior|synapse assembly	cell surface|endocytic vesicle|integral to plasma membrane|synapse	neurexin binding|receptor activity			ovary(1)	1	Renal(35;0.156)					CTACATCCACGGAGGCTCTTA	0.562													30	23					0	0	0.002096	0	0
ZMYM3	9203	broad.mit.edu	37	X	70465569	70465569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:70465569C>T	uc004dzh.1	-	17	2896	c.2809G>A	c.(2809-2811)GAA>AAA	p.E937K	BCYRN1_uc011mpt.1_Intron|ZMYM3_uc004dzi.1_Missense_Mutation_p.E937K|ZMYM3_uc004dzj.1_Missense_Mutation_p.E925K	NM_201599	NP_963893	Q14202	ZMYM3_HUMAN	zinc finger protein 261	937					multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Renal(35;0.156)					GCAATCATTTCTGCCATAGCC	0.527													4	22					0	0	0.000248	0	0
TSIX	9383	broad.mit.edu	37	X	73042618	73042618	+	RNA	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:73042618G>A	uc004ebn.2	+	1		c.30579G>A			XIST_uc004ebm.1_RNA	NR_003255				Homo sapiens XIST antisense RNA (non-protein coding) (TSIX), non-coding RNA.												0						TCGTATGAACGAAAAAATAAA	0.343													16	28					0	0	0.004007	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960534	73960534	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:73960534C>T	uc004eby.2	-	3	4475	c.3858G>A	c.(3856-3858)GGG>GGA	p.G1286G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1286					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TGCTCTCCTTCCCCAAGGCCC	0.517													17	21					0	0	0.004990	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962655	73962655	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:73962655G>A	uc004eby.2	-	3	2354	c.1737C>T	c.(1735-1737)GCC>GCT	p.A579A		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	579					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GTGCCAGCTTGGCATATTTGT	0.448													9	19					0	0	0.004482	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963266	73963266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:73963266C>T	uc004eby.2	-	3	1743	c.1126G>A	c.(1126-1128)GAA>AAA	p.E376K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	376					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TTTTTATCTTCCTCCCCCCAG	0.473													23	53					0	0	0.002780	0	0
ABCB7	22	broad.mit.edu	37	X	74332752	74332752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:74332752C>T	uc004eca.2	-	3	327	c.302G>A	c.(301-303)GGA>GAA	p.G101E	ABCB7_uc004ebz.2_Missense_Mutation_p.G102E|ABCB7_uc011mqn.1_Missense_Mutation_p.G75E|ABCB7_uc010nls.2_Missense_Mutation_p.G102E|ABCB7_uc010nlt.2_Missense_Mutation_p.G101E	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	101					cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						GAGTCCTCCTCCTGCATGACC	0.423													33	57					0	0	0.003271	0	0
UPRT	139596	broad.mit.edu	37	X	74494158	74494158	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:74494158C>T	uc004ecb.1	+	1	198	c.69C>T	c.(67-69)ACC>ACT	p.T23T	UPRT_uc010nlu.1_Silent_p.T23T|UPRT_uc004ecc.1_RNA|UPRT_uc004ecd.1_Silent_p.T23T|UPRT_uc004ece.1_5'Flank	NM_145052	NP_659489	Q96BW1	UPP_HUMAN	uracil phosphoribosyltransferase (FUR1) homolog	23					nucleoside metabolic process	cytoplasm|nucleus					0						CTGCCTCAACCCCAAGTCCCG	0.627													4	16					0	0	0.000248	0	0
CYSLTR1	10800	broad.mit.edu	37	X	77528539	77528539	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:77528539G>A	uc004edb.2	-	3	1105	c.705C>T	c.(703-705)ATC>ATT	p.I235I	CYSLTR1_uc010nma.2_Silent_p.I235I|CYSLTR1_uc010nmb.2_Silent_p.I235I	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	235	Helical; Name=6; (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	TCACGACCATGATCATTCCTA	0.318													7	18					0	0	0.001984	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913701	77913701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:77913701C>T	uc004edc.1	-	2	513	c.217G>A	c.(217-219)GCC>ACC	p.A73T		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	73	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						GCCTCCCAGGCTGCTGGGGGA	0.587													7	14					0	0	0.001984	0	0
ARL13A	392509	broad.mit.edu	37	X	100242503	100242503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:100242503C>T	uc004ego.2	+	6	727	c.611C>T	c.(610-612)TCC>TTC	p.S204F	ARL13A_uc011mrf.1_Missense_Mutation_p.S204F|ARL13A_uc010nng.2_Missense_Mutation_p.S204F	NM_001012990	NP_001013008	Q5H913	AR13A_HUMAN	ADP-ribosylation factor-like 13 isoform a	204							GTP binding			ovary(1)	1						ATCTCAATCTCCAAGAATAAC	0.458													14	44					0	0	0.004990	0	0
CENPI	2491	broad.mit.edu	37	X	100382643	100382643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:100382643C>T	uc004egx.2	+	10	1333	c.1063C>T	c.(1063-1065)CAT>TAT	p.H355Y	CENPI_uc011mrg.1_Missense_Mutation_p.H355Y|CENPI_uc004egy.2_Missense_Mutation_p.H355Y	NM_006733	NP_006724	Q92674	CENPI_HUMAN	centromere protein I	355					CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	cytosol|kinetochore|nucleoplasm	protein binding			skin(1)	1						ACAGAACATCCATTGCTTAGA	0.313													40	50					0	0	0.003610	0	0
BTK	695	broad.mit.edu	37	X	100625055	100625055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:100625055C>T	uc004ehg.2	-	5	515	c.322G>A	c.(322-324)GAA>AAA	p.E108K	BTK_uc010nnn.2_Missense_Mutation_p.E108K|BTK_uc010nno.2_Missense_Mutation_p.E142K|BTK_uc004ehi.2_Missense_Mutation_p.E108K	NM_000061	NP_000052	Q06187	BTK_HUMAN	Bruton agammaglobulinemia tyrosine kinase	108	PH.				calcium-mediated signaling|induction of apoptosis by extracellular signals|mesoderm development	cytosol|membrane raft|nucleus|plasma membrane	ATP binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol-3,4,5-trisphosphate binding			lung(3)|central_nervous_system(2)|ovary(1)	6						AGAGGCCCTTCATCATATACA	0.408									Agammaglobulinemia_X-linked				33	57					0	0	0.001951	0	0
NXF4	55999	broad.mit.edu	37	X	101818182	101818182	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:101818182C>T	uc004ejf.1	+	7		c.772C>T				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						CTCTTGATCTCCAGAGGCTCC	0.532													39	93					0	0	0.002222	0	0
GPRASP1	9737	broad.mit.edu	37	X	101910900	101910900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:101910900C>T	uc004ejj.3	+	5	2860	c.2059C>T	c.(2059-2061)CCT>TCT	p.P687S	GPRASP1_uc004eji.3_Missense_Mutation_p.P687S|GPRASP1_uc010nod.2_Missense_Mutation_p.P687S	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	687	Glu-rich.					cytoplasm	protein binding			ovary(1)|lung(1)	2						CTGTATGTATCCTGCCGGTGG	0.478													37	104					0	0	0.004878	0	0
MORF4L2	9643	broad.mit.edu	37	X	102931837	102931837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:102931837C>T	uc004ekw.2	-	4	1351	c.119G>A	c.(118-120)GGA>GAA	p.G40E	MORF4L2_uc004ela.2_Missense_Mutation_p.G40E|MORF4L2_uc004ekx.2_Missense_Mutation_p.G40E|MORF4L2_uc004elb.2_Missense_Mutation_p.G40E|MORF4L2_uc004eky.2_Missense_Mutation_p.G40E|MORF4L2_uc010nos.2_Missense_Mutation_p.G40E|MORF4L2_uc004ekz.2_Missense_Mutation_p.G40E|MORF4L2_uc011mry.1_Missense_Mutation_p.G40E|MORF4L2_uc011mrz.1_Missense_Mutation_p.G40E|MORF4L2_uc004elc.2_Missense_Mutation_p.G40E|MORF4L2_uc004elf.2_Missense_Mutation_p.G40E|MORF4L2_uc004ele.2_Missense_Mutation_p.G40E|MORF4L2_uc011msa.1_Missense_Mutation_p.G40E|MORF4L2_uc011msb.1_Missense_Mutation_p.G40E|MORF4L2_uc011msc.1_Missense_Mutation_p.G40E|MORF4L2_uc011msd.1_Missense_Mutation_p.G40E|MORF4L2_uc004eld.2_Missense_Mutation_p.G40E	NM_012286	NP_036418	Q15014	MO4L2_HUMAN	mortality factor 4 like 2	40					chromatin modification|DNA repair|regulation of cell growth|transcription, DNA-dependent	nucleolus	protein binding				0						TGTCTTCTTTCCTGAGGAGGC	0.507													14	32					0	0	0.001855	0	0
ESX1	80712	broad.mit.edu	37	X	103495543	103495543	+	Missense_Mutation	SNP	C	T	T	rs144948361		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:103495543C>T	uc004ely.2	-	4	645	c.587G>A	c.(586-588)CGA>CAA	p.R196Q		NM_153448	NP_703149	Q8N693	ESX1_HUMAN	extraembryonic, spermatogenesis, homeobox	196	Homeobox.				negative regulation of transcription, DNA-dependent|regulation of cell cycle	cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CCTCTGATTTCGTTTCCACTT	0.433													60	142					0	0	0.003610	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280658	105280658	+	Missense_Mutation	SNP	C	T	T	rs148370308		TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:105280658C>T	uc004eme.1	-	1	408	c.392G>A	c.(391-393)GGA>GAA	p.G131E	SERPINA7_uc010npd.2_Missense_Mutation_p.G131E|SERPINA7_uc010npe.1_Missense_Mutation_p.G131E	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	131					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GAGGGCATTTCCTATCTGCAA	0.443													11	31					0	0	0.000673	0	0
RIPPLY1	92129	broad.mit.edu	37	X	106144120	106144120	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:106144120G>A	uc004emr.1	-	4	359	c.315C>T	c.(313-315)TCC>TCT	p.S105S	MORC4_uc004emp.3_Intron|CLDN2_uc004emq.1_Intron|RIPPLY1_uc004ems.1_Silent_p.S58S	NM_138382	NP_612391	Q0D2K3	RIPP1_HUMAN	ripply1 homolog	105	Ripply homology domain.				negative regulation of transcription, DNA-dependent|somite rostral/caudal axis specification|somite specification|transcription, DNA-dependent	nucleus					0						CGAAGGAGCGGGATTTAGGCC	0.512													5	15					0	0	0.000602	0	0
VSIG1	340547	broad.mit.edu	37	X	107316000	107316000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:107316000C>T	uc004eno.2	+	4	667	c.506C>T	c.(505-507)TCC>TTC	p.S169F	VSIG1_uc011msk.1_Missense_Mutation_p.S205F	NM_182607	NP_872413	Q86XK7	VSIG1_HUMAN	V-set and immunoglobulin domain containing 1	169	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						GGAACACCTTCCCCTGTGTAC	0.483													20	64					0	0	0.001882	0	0
COL4A6	1288	broad.mit.edu	37	X	107413860	107413860	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:107413860G>T	uc004enw.3	-	35	3578	c.3475C>A	c.(3475-3477)CCC>ACC	p.P1159T	COL4A6_uc004env.3_Missense_Mutation_p.P1158T|COL4A6_uc011msn.1_Missense_Mutation_p.P1158T|COL4A6_uc010npk.2_Missense_Mutation_p.P1158T	NM_001847	NP_001838	Q14031	CO4A6_HUMAN	type IV alpha 6 collagen isoform A precursor	1159	Triple-helical region.				cell adhesion|extracellular matrix organization	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(6)|urinary_tract(1)|large_intestine(1)	8						ATTAATCCGGGGGATCCTAGA	0.488									Alport_syndrome_with_Diffuse_Leiomyomatosis				69	89					1.07363e-35	1.36644e-35	0.003610	1	0
RGAG1	57529	broad.mit.edu	37	X	109697580	109697580	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:109697580C>T	uc004eor.1	+	3	3981	c.3735C>T	c.(3733-3735)GGC>GGT	p.G1245G	RGAG1_uc011msr.1_Silent_p.G1245G	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	1245										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CCAAACAGGGCCAAAAGTCAG	0.483													51	56					0	0	0.003610	0	0
ALG13	79868	broad.mit.edu	37	X	110968239	110968239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:110968239G>A	uc011msy.1	+	15	1713	c.1679G>A	c.(1678-1680)CGG>CAG	p.R560Q	ALG13_uc011msx.1_Missense_Mutation_p.R456Q|ALG13_uc011msz.1_Missense_Mutation_p.R482Q|ALG13_uc011mta.1_Missense_Mutation_p.R456Q|ALG13_uc011mtb.1_Missense_Mutation_p.R456Q			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	560					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						ATGCCCAGTCGGAAAGGAAGA	0.433													17	37					0	0	0.006122	0	0
TRPC5	7224	broad.mit.edu	37	X	111155953	111155953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:111155953C>T	uc004epl.1	-	3	1385	c.466G>A	c.(466-468)GAA>AAA	p.E156K	TRPC5_uc004epm.1_Missense_Mutation_p.E156K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	156	Cytoplasmic (Potential).|ANK 4.				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TTGATGATTTCGTAGTTGTTG	0.512													44	42					0	0	0.002522	0	0
HTR2C	3358	broad.mit.edu	37	X	114141608	114141608	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:114141608T>A	uc004epu.1	+	6	1735	c.1007T>A	c.(1006-1008)CTT>CAT	p.L336H	HTR2C_uc010nqc.1_Missense_Mutation_p.L336H|HTR2C_uc004epv.1_3'UTR	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	336	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity	p.L336V(1)		ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	CTGTCTGTTCTTTGTGAGAAG	0.373													35	42					0	0	0.004878	0	0
LRCH2	57631	broad.mit.edu	37	X	114347894	114347894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:114347894C>T	uc010nqe.2	-	21	2214	c.2183G>A	c.(2182-2184)AGA>AAA	p.R728K	LRCH2_uc004epz.2_Missense_Mutation_p.R711K	NM_020871	NP_065922	Q5VUJ6	LRCH2_HUMAN	leucine-rich repeats and calponin homology (CH)	728	CH.									ovary(1)	1						CAAACAAAGTCTTTCCTGGAG	0.328													6	16					0	0	0.001168	0	0
AGTR2	186	broad.mit.edu	37	X	115303632	115303632	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:115303632G>A	uc004eqh.3	+	3	306	c.99G>A	c.(97-99)TTG>TTA	p.L33L		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	33	Extracellular (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						AGTCTACCTTGAACTGTTCAC	0.393													9	13					0	0	0.004482	0	0
KLHL13	90293	broad.mit.edu	37	X	117043419	117043419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:117043419C>T	uc004eql.2	-	5	1273	c.1211G>A	c.(1210-1212)GGA>GAA	p.G404E	KLHL13_uc004eqk.2_Missense_Mutation_p.G353E|KLHL13_uc011mtn.1_Missense_Mutation_p.G244E|KLHL13_uc011mto.1_Missense_Mutation_p.G398E|KLHL13_uc011mtp.1_Missense_Mutation_p.G406E|KLHL13_uc004eqm.2_Missense_Mutation_p.G353E|KLHL13_uc011mtq.1_Missense_Mutation_p.G388E	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	404	Kelch 2.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TGCCGTTTTTCCTTTTGTATC	0.433													28	15					0	0	0.004656	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117960201	117960201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:117960201C>T	uc004equ.2	+	4	1467	c.994C>T	c.(994-996)CCT>TCT	p.P332S		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	332					regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						GAATAACGGTCCTGGGGAGAT	0.517													23	61					0	0	0.002780	0	0
ZCCHC12	170261	broad.mit.edu	37	X	117960250	117960250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:117960250C>T	uc004equ.2	+	4	1516	c.1043C>T	c.(1042-1044)TCG>TTG	p.S348L		NM_173798	NP_776159	Q6PEW1	ZCH12_HUMAN	zinc finger, CCHC domain containing 12	348	CCHC-type.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		nucleic acid binding|zinc ion binding			ovary(1)	1						ATCCGCTGTTCGTATTGTGGT	0.502													22	44					0	0	0.001882	0	0
KIAA1210	57481	broad.mit.edu	37	X	118219348	118219348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:118219348C>T	uc004era.3	-	12	4846	c.4846G>A	c.(4846-4848)GAG>AAG	p.E1616K		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1616										ovary(4)|skin(1)	5						GGTCCTACCTCATATTTAGGC	0.458													59	58					0	0	0.003610	0	0
ZBTB33	10009	broad.mit.edu	37	X	119388970	119388970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:119388970C>T	uc004esn.1	+	2	1928	c.1700C>T	c.(1699-1701)TCA>TTA	p.S567L	ZBTB33_uc010nqm.1_Missense_Mutation_p.S567L	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	567	Interaction with CTNND1 (By similarity).|C2H2-type 3.|Required for DNA-binding (By similarity).				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TTTATGTCTTCACATATAAAG	0.393													26	54					0	0	0.006320	0	0
GRIA3	2892	broad.mit.edu	37	X	122318472	122318472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:122318472G>A	uc004etq.3	+	2	378	c.85G>A	c.(85-87)GGA>AGA	p.G29R	GRIA3_uc004etr.3_Missense_Mutation_p.G29R|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_5'Flank|GRIA3_uc010nqs.1_Missense_Mutation_p.G29R	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	29	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TTCTCACGGAGGATTCCCCAA	0.587													29	62					0	0	0.006320	0	0
THOC2	57187	broad.mit.edu	37	X	122758465	122758465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:122758465C>T	uc004etu.2	-	26	3145	c.3113G>A	c.(3112-3114)CGA>CAA	p.R1038Q	THOC2_uc004etw.1_5'Flank	NM_001081550	NP_001075019	Q8NI27	THOC2_HUMAN	THO complex 2	1038					intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	THO complex part of transcription export complex	protein binding|RNA binding			ovary(3)	3						CCTTCCGTATCGACTGGCTTC	0.353													34	116					0	0	0.002836	0	0
ODZ1	10178	broad.mit.edu	37	X	123554567	123554567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:123554567G>A	uc004euj.2	-	24	4619	c.4555C>T	c.(4555-4557)CGT>TGT	p.R1519C	ODZ1_uc011muj.1_Missense_Mutation_p.R1525C|ODZ1_uc010nqy.2_Missense_Mutation_p.R1526C	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1519	Extracellular (Potential).|NHL 5.				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTGATGGTACGAATTCGAACA	0.483													31	34					0	0	0.002096	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185268	127185268	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:127185268G>A	uc004eum.2	-	1	1115	c.918C>T	c.(916-918)CTC>CTT	p.L306L		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	306						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						GCCCAGGGAGGAGAGTGGTGC	0.498													37	36					0	0	0.003755	0	0
SLC25A14	9016	broad.mit.edu	37	X	129483303	129483303	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:129483303C>T	uc004evn.1	+	5	609	c.396C>T	c.(394-396)TTC>TTT	p.F132F	SLC25A14_uc011mut.1_Silent_p.F97F|SLC25A14_uc011muu.1_Silent_p.F132F|SLC25A14_uc010nrg.2_Silent_p.F129F|SLC25A14_uc004evo.1_5'UTR|SLC25A14_uc004evp.1_Silent_p.F132F|SLC25A14_uc004evq.1_Silent_p.F129F|SLC25A14_uc004evr.1_Silent_p.F129F	NM_003951	NP_003942	O95258	UCP5_HUMAN	solute carrier family 25, member 14 isoform	132					aerobic respiration|mitochondrial transport	integral to plasma membrane|mitochondrial inner membrane	binding			ovary(1)	1						AGCGCTTATTCGTAGAACGTT	0.373													13	23					0	0	0.002450	0	0
FRMD7	90167	broad.mit.edu	37	X	131234671	131234671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:131234671C>T	uc004ewn.2	-	2	309	c.131G>A	c.(130-132)GGA>GAA	p.G44E	FRMD7_uc011muy.1_Missense_Mutation_p.G44E	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	44	FERM.				regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GAATTCTAATCCAAAATATTC	0.368													27	34					0	0	0.001512	0	0
USP26	83844	broad.mit.edu	37	X	132161740	132161741	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:132161740_132161741CC>TT	uc010nrm.1	-	6	978_979	c.508_509GG>AA	c.(508-510)GGA>AAA	p.G170K	USP26_uc011mvf.1_Missense_Mutation_p.G170K	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	170					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TGATAACTCTCCGCAAGTAAGT	0.376													10	24					0	0	0.004672	0	0
USP26	83844	broad.mit.edu	37	X	132161988	132161988	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:132161988G>A	uc010nrm.1	-	6	731	c.261C>T	c.(259-261)TCC>TCT	p.S87S	USP26_uc011mvf.1_Silent_p.S87S	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	87					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					CATCTGTGGAGGATAATCCTT	0.363													13	6					0	0	0.001368	0	0
SLC9A6	10479	broad.mit.edu	37	X	135092720	135092720	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:135092720C>T	uc004ezj.2	+	7	999	c.923C>T	c.(922-924)GCT>GTT	p.A308V	SLC9A6_uc004ezk.2_Missense_Mutation_p.A340V|SLC9A6_uc011mvx.1_Missense_Mutation_p.A288V	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	308	Helical; (Potential).				regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					ATGGGTGCTGCTACTGGAGTG	0.388													28	43					0	0	0.001786	0	0
GPR112	139378	broad.mit.edu	37	X	135429029	135429029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:135429029C>T	uc004ezu.1	+	6	3455	c.3164C>T	c.(3163-3165)TCC>TTC	p.S1055F	GPR112_uc010nsb.1_Missense_Mutation_p.S850F|GPR112_uc010nsc.1_Missense_Mutation_p.S822F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1055	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCAAATCTATCCTCAACTACA	0.473													39	33					0	0	0.006230	0	0
HTATSF1	27336	broad.mit.edu	37	X	135593648	135593648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:135593648G>A	uc004ezw.2	+	10	2166	c.1744G>A	c.(1744-1746)GAG>AAG	p.E582K	HTATSF1_uc004ezx.2_Missense_Mutation_p.E582K	NM_001163280	NP_001156752	O43719	HTSF1_HUMAN	HIV-1 Tat specific factor 1	582	Asp/Glu-rich (acidic).|Mediates interaction with the P-TEFb complex.				regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|viral genome replication	nucleus	nucleotide binding|protein binding|RNA binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					TTCTGAAAAGGAGCTTCATGA	0.393													16	43					0	0	0.003163	0	0
MCF2	4168	broad.mit.edu	37	X	138698533	138698533	+	Missense_Mutation	SNP	C	T	T	rs41304534	byFrequency	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:138698533C>T	uc004fau.2	-	9	1393	c.1099G>A	c.(1099-1101)GAA>AAA	p.E367K	MCF2_uc004fav.2_Missense_Mutation_p.E367K|MCF2_uc011mwl.1_Missense_Mutation_p.E328K|MCF2_uc010nsh.1_Missense_Mutation_p.E367K|MCF2_uc011mwm.1_Missense_Mutation_p.E328K|MCF2_uc011mwn.1_Missense_Mutation_p.E512K|MCF2_uc004faw.2_Missense_Mutation_p.E427K|MCF2_uc011mwo.1_Missense_Mutation_p.E427K	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	367					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					AGAAAATTTTCAATGTCTTGG	0.373													7	9					0	0	0.001984	0	0
ATP11C	286410	broad.mit.edu	37	X	138878601	138878601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:138878601G>A	uc004faz.2	-	12	1145	c.1046C>T	c.(1045-1047)TCA>TTA	p.S349L	ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Missense_Mutation_p.S349L	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	349	Helical; (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					AACCATAAATGATAGGAAGTC	0.333													23	23					0	0	0.003330	0	0
CXorf66	347487	broad.mit.edu	37	X	139038338	139038338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:139038338G>A	uc004fbb.2	-	3	825	c.803C>T	c.(802-804)CCC>CTC	p.P268L		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	268	Cytoplasmic (Potential).					integral to membrane					0						TTTCTTGTAGGGTTGACAAGT	0.393													46	38					0	0	0.002852	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969256	140969256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:140969256C>T	uc011mwp.1	+	4	583	c.583C>T	c.(583-585)CTT>TTT	p.L195F		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	195	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGCAGTTTCTTCTCCTCAA	0.443													51	44					0	0	0.003610	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291746	141291746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:141291746G>A	uc004fbu.1	-	3	376	c.28C>T	c.(28-30)CGC>TGC	p.R10C		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	10						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCAACGTTGCGGAATGGAACG	0.542										HNSCC(46;0.14)			34	100					0	0	0.003271	0	0
UBE2NL	389898	broad.mit.edu	37	X	142967418	142967418	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:142967418C>T	uc004fca.2	+	1	246	c.216C>T	c.(214-216)TTC>TTT	p.F72F		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	72							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					AAGTACGTTTCATGACCAAAA	0.418													30	34					0	0	0.002836	0	0
FMR1	2332	broad.mit.edu	37	X	147024747	147024747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:147024747G>A	uc010nst.2	+	14	1561	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	FMR1_uc004fcj.2_Missense_Mutation_p.E435K|FMR1_uc004fck.3_Missense_Mutation_p.E437K|FMR1_uc004fcl.3_Missense_Mutation_p.E298K|FMR1_uc011mxa.1_Missense_Mutation_p.E105K	NM_002024	NP_002015	Q06787	FMR1_HUMAN	fragile X mental retardation 1	458	Interaction with RANBP9.				mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TACAGATAAGGAAAAAAGCTA	0.463									Fragile_X_syndrome				28	73					0	0	0.006320	0	0
IDS	3423	broad.mit.edu	37	X	148564354	148564354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:148564354C>T	uc011mxe.1	-	9	1774	c.1576G>A	c.(1576-1578)GAT>AAT	p.D526N	IDS_uc011mxd.1_Missense_Mutation_p.D129N|IDS_uc011mxf.1_Missense_Mutation_p.D436N|IDS_uc011mxg.1_Missense_Mutation_p.D315N|IDS_uc010nsu.1_Missense_Mutation_p.D136N|IDS_uc004fcw.3_Missense_Mutation_p.D315N	NM_000202	NP_000193	P22304	IDS_HUMAN	iduronate-2-sulfatase isoform a precursor	526						lysosome	iduronate-2-sulfatase activity|metal ion binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GGGTCAGAATCCACAAAATAC	0.423													19	30					0	0	0.001216	0	0
PRRG3	79057	broad.mit.edu	37	X	150869255	150869255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:150869255G>A	uc004few.1	+	4	836	c.446G>A	c.(445-447)CGA>CAA	p.R149Q		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	149	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTGGGCACCGAGAGGCAGCG	0.677													25	23					0	0	0.003954	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092154	151092154	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:151092154G>A	uc004fez.2	+	3	174	c.18G>A	c.(16-18)AAG>AAA	p.K6K	MAGEA4_uc004ffa.2_Silent_p.K6K|MAGEA4_uc004ffb.2_Silent_p.K6K|MAGEA4_uc004ffc.2_Silent_p.K6K|MAGEA4_uc004ffd.2_Silent_p.K6K	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	6							protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGAGCAGAAGAGTCAGCACT	0.607													30	27					0	0	0.007291	0	0
MIR452	574412	broad.mit.edu	37	X	151128115	151128115	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:151128115C>T	hsa-mir-452|MI0001733	-			c.70C>T			GABRE_uc004ffi.2_Intron|GABRE_uc011myd.1_Intron|GABRE_uc011mye.1_Intron|MIR224_hsa-mir-224|MI0000301_5'Flank																	0						GCACTTACTTCTTTGCAGATG	0.428													39	45					0	0	0.002222	0	0
MIR105-2	406898	broad.mit.edu	37	X	151562929	151562929	+	RNA	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:151562929C>T	hsa-mir-105-2|MI0000112	-			c.36C>T			GABRA3_uc010ntk.1_Intron|MIR105-1_hsa-mir-105-1|MI0000111_5'Flank|uc004ffo.2_5'Flank|MIR767_hsa-mir-767|MI0003763_5'Flank|uc011myf.1_RNA																	0						CATAAGCAGCCACCACAGGAG	0.468													14	27					0	0	0.003163	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870130	151870130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:151870130G>A	uc004ffq.1	+	3	1014	c.820G>A	c.(820-822)GGT>AGT	p.G274S	MAGEA6_uc004ffr.1_Missense_Mutation_p.G274S|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	274	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					GTTCCTGTGGGGTCCAAGGGC	0.532													70	79					0	0	0.003610	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900008	151900008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:151900008C>T	uc010ntp.2	-	3	1147	c.793G>A	c.(793-795)GAT>AAT	p.D265N	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.D265N	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	265	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CATGCAGGATCACTGCCGGGG	0.552													30	77					0	0	0.001786	0	0
CETN2	1069	broad.mit.edu	37	X	151997134	151997134	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:151997134G>A	uc004fgq.2	-	4	423	c.376C>T	c.(376-378)CTG>TTG	p.L126L	CETN2_uc004fgr.2_Silent_p.L55L|NSDHL_uc004fgt.1_5'Flank|NSDHL_uc004fgs.1_5'Flank	NM_004344	NP_004335	P41208	CETN2_HUMAN	caltractin	126	EF-hand 3.				cell division|centriole replication|G2/M transition of mitotic cell cycle|mitosis|nucleotide-excision repair|regulation of cytokinesis	centriole|cytosol|XPC complex	ATP binding|ATP-dependent helicase activity|calcium ion binding|nucleic acid binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					ACGCGTTTCAGATTTTTGAAC	0.418								Direct_reversal_of_damage|NER					31	63					0	0	0.001786	0	0
PNMA5	114824	broad.mit.edu	37	X	152159655	152159655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:152159655G>A	uc010ntw.2	-	3	827	c.488C>T	c.(487-489)TCG>TTG	p.S163L	PNMA5_uc004fha.3_Missense_Mutation_p.S163L|PNMA5_uc010ntx.2_Missense_Mutation_p.S163L|PNMA5_uc004fgy.3_Missense_Mutation_p.S163L	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	163					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGTTCCCGAAAACACTTT	0.463													43	82					0	0	0.002222	0	0
PNMA3	29944	broad.mit.edu	37	X	152226767	152226767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:152226767C>T	uc004fhc.2	+	2	1691	c.1355C>T	c.(1354-1356)GCT>GTT	p.A452V	PNMA5_uc004fha.3_5'Flank|PNMA3_uc004fhd.2_5'Flank	NM_013364	NP_037496	Q9UL41	PNMA3_HUMAN	paraneoplastic cancer-testis-brain antigen	452					apoptosis	nucleolus	nucleic acid binding|zinc ion binding			skin(2)|large_intestine(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GGGAACTGGGCTTGGGACAAG	0.537													65	60					0	0	0.003610	0	0
PDZD4	57595	broad.mit.edu	37	X	153070124	153070124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:153070124C>T	uc004fiz.1	-	8	1244	c.994G>A	c.(994-996)GAC>AAC	p.D332N	PDZD4_uc004fiy.1_Missense_Mutation_p.D257N|PDZD4_uc004fix.2_Missense_Mutation_p.D236N|PDZD4_uc004fja.1_Missense_Mutation_p.D338N|PDZD4_uc011mze.1_Missense_Mutation_p.D223N	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	332						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGAGAGTCCATGCTGAAA	0.672													17	39					0	0	0.004990	0	0
TKTL1	8277	broad.mit.edu	37	X	153556204	153556204	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:153556204C>T	uc004fkg.2	+	12	1704	c.1518C>T	c.(1516-1518)ATC>ATT	p.I506I	TKTL1_uc011mzl.1_Silent_p.I500I|TKTL1_uc011mzm.1_Silent_p.I302I|TKTL1_uc004fkh.2_Silent_p.I450I	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	506					glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCCGTGTCATCGACCTGTTTA	0.453													108	98					0	0	0.003610	0	0
TKTL1	8277	broad.mit.edu	37	X	153556243	153556243	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:153556243C>T	uc004fkg.2	+	12	1743	c.1557C>T	c.(1555-1557)ATC>ATT	p.I519I	TKTL1_uc011mzl.1_Silent_p.I513I|TKTL1_uc011mzm.1_Silent_p.I315I|TKTL1_uc004fkh.2_Silent_p.I463I	NM_012253	NP_036385	P51854	TKTL1_HUMAN	transketolase-like 1 isoform a	519				I -> N (in Ref. 6; AAA21557).	glucose catabolic process|thiamine metabolic process	cytoplasm|nucleus	metal ion binding|transketolase activity			ovary(3)|skin(1)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.82e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCGCCACCATCGTCTCCAGTG	0.478													63	103					0	0	0.003610	0	0
DKC1	1736	broad.mit.edu	37	X	153995569	153995569	+	Silent	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:153995569C>T	uc004fmm.2	+	7	762	c.552C>T	c.(550-552)CCC>CCT	p.P184P	DKC1_uc010nvf.2_Silent_p.P184P|SNORA36A_uc004fmn.2_5'Flank	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	184					cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TCCAGCGACCCCCACTTATTG	0.448									Congenital_Dyskeratosis				53	131					0	0	0.003610	0	0
F8	2157	broad.mit.edu	37	X	154157818	154157818	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:154157818G>A	uc004fmt.2	-	14	4418	c.4247C>T	c.(4246-4248)CCA>CTA	p.P1416L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1416	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TCTAATAGATGGAAATGATGA	0.418													24	54					0	0	0.004656	0	0
F8	2157	broad.mit.edu	37	X	154158173	154158173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:154158173C>T	uc004fmt.2	-	14	4063	c.3892G>A	c.(3892-3894)GGC>AGC	p.G1298S		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1298	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTTCCCAAGCCTTCCAAGTTT	0.368													23	37					0	0	0.001882	0	0
F8	2157	broad.mit.edu	37	X	154159085	154159085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:154159085C>T	uc004fmt.2	-	14	3151	c.2980G>A	c.(2980-2982)GGG>AGG	p.G994R		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	994	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GCTCTTTTCCCTTTAAATAAC	0.333													23	31					0	0	0.005443	0	0
RAB39B	116442	broad.mit.edu	37	X	154493472	154493472	+	Silent	SNP	G	A	A			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chrX:154493472G>A	uc004fne.2	-	1	381	c.102C>T	c.(100-102)GCC>GCT	p.A34A		NM_171998	NP_741995	Q96DA2	RB39B_HUMAN	RAB39B, member RAS oncogene family	34					protein transport|small GTPase mediated signal transduction|synapse organization|vesicle-mediated transport	Golgi apparatus|plasma membrane	GTP binding				0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					CAGAAACCTGGGCAAAGCGAC	0.597													27	80					0	0	0.007291	0	0
CTBS	1486	broad.mit.edu	37	1	85040025	85040033	+	In_Frame_Del	DEL	AGCAGCGCT	-	-	rs150466708	by1000genomes	TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr1:85040025_85040033delAGCAGCGCT	uc001dka.2	-	1	131_139	c.66_74delAGCGCTGCT	c.(64-75)CTAGCGCTGCTG>CTG	p.22_25LALL>L	CTBS_uc001dkc.2_5'UTR|CTBS_uc001dkd.2_5'UTR|CTBS_uc001dkb.2_5'UTR	NM_004388	NP_004379	Q01459	DIAC_HUMAN	chitobiase, di-N-acetyl- precursor	22_25						lysosome	cation binding				0				all cancers(265;0.00727)|Epithelial(280;0.0192)|OV - Ovarian serous cystadenocarcinoma(397;0.166)		cagcagcgccagcagcgcTAGACCCGGGA	0.589													4	4	---	---	---	---					
ZSCAN29	146050	broad.mit.edu	37	15	43653379	43653380	+	In_Frame_Ins	INS	-	TAT	TAT			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr15:43653379_43653380insTAT	uc001zrk.1	-	5	2597_2598	c.2450_2451insATA	c.(2449-2451)CCC>CCATAC	p.818_819insY	ZSCAN29_uc001zrj.1_In_Frame_Ins_p.698_699insY|ZSCAN29_uc010bdf.1_3'UTR|ZSCAN29_uc001zrl.1_RNA|ZSCAN29_uc010bdg.1_In_Frame_Ins_p.428_429insY	NM_152455	NP_689668	Q8IWY8	ZSC29_HUMAN	zinc finger protein 690	818_819	C2H2-type 6.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.97e-07)		GACACCCATAGGGTTTCTCTCC	0.480													21	71	---	---	---	---					
NF1	4763	broad.mit.edu	37	17	29560024	29560034	+	Frame_Shift_Del	DEL	AGGTTACCACA	-	-			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr17:29560024_29560034delAGGTTACCACA	uc002hgg.2	+	27	3834_3844	c.3501_3511delAGGTTACCACA	c.(3499-3513)TTAGGTTACCACAAGfs	p.L1167fs	NF1_uc002hgh.2_Frame_Shift_Del_p.L1167fs|NF1_uc010csn.1_Frame_Shift_Del_p.L1027fs|NF1_uc002hgi.1_Frame_Shift_Del_p.L200fs	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1167_1171					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CATTAGGCTTAGGTTACCACAAGGATCTCCA	0.389			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			26	8	---	---	---	---					
BCL3	602	broad.mit.edu	37	19	45252260	45252261	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr19:45252260_45252261insC	uc010xxe.1	+	1	283_284	c.213_214insC	c.(211-216)GGGCCCfs	p.G71fs		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	71_72	Pro-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				CGGTCCCCGGGCCCCCCCACGG	0.584			T	IGH@	CLL 								2	4	---	---	---	---					
TMEM140	55281	broad.mit.edu	37	7	134849432	134849433	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr7:134849432_134849433insG	uc003vsi.2	+	2	520_521	c.239_240insG	c.(238-240)CTGfs	p.L80fs	C7orf49_uc003vsh.2_Intron	NM_018295	NP_060765	Q9NV12	TM140_HUMAN	transmembrane protein 140	80	Helical; (Potential).					integral to membrane				large_intestine(1)	1						CGGGTTGGCCTGGGCCTGGCCA	0.624													22	103	---	---	---	---					
KIAA0649	9858	broad.mit.edu	37	9	138379510	138379511	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A3AE-06A-11D-A196-08	TCGA-EE-A3AE-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	1a1379ce-9fac-4b2d-abca-1552e1ffa6c3	e0e7f670-21d1-4eb5-a1d3-a05214dacd06	g.chr9:138379510_138379511insG	uc004cfr.1	+	4	3703_3704	c.3154_3155insG	c.(3154-3156)AGGfs	p.R1052fs		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	1052						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		TGCAGTGTGGAGGGGGGGCGTC	0.738													2	4	---	---	---	---					
