Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PRDM16	63976	broad.mit.edu	37	1	3350340	3350340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:3350340G>A	uc001akf.2	+	17	3876	c.3796G>A	c.(3796-3798)GAG>AAG	p.E1266K	PRDM16_uc001akc.2_Missense_Mutation_p.E1246K|PRDM16_uc001akd.2_Missense_Mutation_p.E1265K|PRDM16_uc001ake.2_Missense_Mutation_p.E1247K|PRDM16_uc009vlh.2_Missense_Mutation_p.E966K	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	1266	Mediates interaction with SKI and regulation of TGF-beta signaling.				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		AGCCACGTCGGAGTCTGGAGC	0.642000			T	EVI1	MDS|AML								45	48					0	0	0.00361006	0	0
UTS2	10911	broad.mit.edu	37	1	7913039	7913039	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:7913039A>C	uc001aor.2	-	1	66	c.25T>G	c.(25-27)TTG>GTG	p.L9V	UTS2_uc001aoq.2_Missense_Mutation_p.L9V|UTS2_uc001aos.2_Intron	NM_006786	NP_006777	O95399	UTS2_HUMAN	urotensin 2 isoform b preproprotein	9					muscle contraction|regulation of blood pressure|synaptic transmission	extracellular space	hormone activity				0	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;1.38e-20)|all_lung(118;1.29e-06)|Lung NSC(185;7.5e-06)|Renal(390;0.000147)|Breast(348;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.26e-71)|GBM - Glioblastoma multiforme(8;5.15e-36)|Colorectal(212;1.27e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000386)|KIRC - Kidney renal clear cell carcinoma(229;0.000894)|STAD - Stomach adenocarcinoma(132;0.000951)|READ - Rectum adenocarcinoma(331;0.0642)		ATGAAAAGCAAACAGCAGGAG	0.428000													42	38					0	0	0.00128727	0	0
VPS13D	55187	broad.mit.edu	37	1	12566992	12566992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:12566992G>A	uc001atv.2	+	69	13021	c.12880G>A	c.(12880-12882)GAT>AAT	p.D4294N	VPS13D_uc001atw.2_Missense_Mutation_p.D4269N|VPS13D_uc001atx.2_Missense_Mutation_p.D3481N|VPS13D_uc009vnl.2_RNA|VPS13D_uc010obd.1_Missense_Mutation_p.D292N|SNORA59B_uc001atz.1_5'Flank	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	4293					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGACTACGTGGATCGAGAAGC	0.488000													31	34					0	0	0.001512	0	0
PRAMEF12	390999	broad.mit.edu	37	1	12835842	12835842	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:12835842C>T	uc001aui.2	+	2	471	c.444C>T	c.(442-444)ATC>ATT	p.I148I		NM_001080830	NP_001074299	O95522	PRA12_HUMAN	PRAME family member 12	148										ovary(3)	3	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00818)|Colorectal(212;5.04e-06)|Kidney(185;4.99e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000198)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGATGGTGATCCTAGACCTTT	0.547000													48	55					0	0	0.00361006	0	0
LOC440563	440563	broad.mit.edu	37	1	13183507	13183507	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:13183507C>T	uc010obg.1	-	1	461	c.366G>A	c.(364-366)GGG>GGA	p.G122G		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	122						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						AACTGTACATCCCATCATAAT	0.522000													14	73					0	0	0.00074312	0	0
SPEN	23013	broad.mit.edu	37	1	16255330	16255330	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:16255330G>A	uc001axk.1	+	11	2799	c.2595G>A	c.(2593-2595)GAG>GAA	p.E865E	SPEN_uc010obp.1_Silent_p.E824E	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	865					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CTGACAAAGAGGGAATAGCGA	0.468000													35	45					0	0	0.00327116	0	0
CELA3A	10136	broad.mit.edu	37	1	22328198	22328198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:22328198C>T	uc001bfl.2	+	1	50	c.31C>T	c.(31-33)CTT>TTT	p.L11F	CELA3B_uc009vqf.2_Intron	NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	11					cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						TTCCCTCCTCCTTGTGGCCGT	0.547000													98	103					0	0	0.00361006	0	0
COL16A1	1307	broad.mit.edu	37	1	32124100	32124100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:32124100G>A	uc001btk.1	-	64	4374	c.4009C>T	c.(4009-4011)CCT>TCT	p.P1337S	COL16A1_uc001bti.1_5'UTR|COL16A1_uc001btj.1_Missense_Mutation_p.P1135S	NM_001856	NP_001847	Q07092	COGA1_HUMAN	alpha 1 type XVI collagen precursor	1337	Triple-helical region 2 (COL2) with 2 imperfections.				cell adhesion|female pregnancy|integrin-mediated signaling pathway	collagen type XVI	integrin binding|structural molecule activity			ovary(8)	8		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0423)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.059)		GGGGGGCCAGGGTGTCCAGGG	0.602000													7	15					0	0	0.00198382	0	0
CSMD2	114784	broad.mit.edu	37	1	34102028	34102028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:34102028G>A	uc001bxn.1	-	30	4810	c.4781C>T	c.(4780-4782)TCG>TTG	p.S1594L	CSMD2_uc001bxm.1_Missense_Mutation_p.S1634L|CSMD2_uc001bxo.1_Missense_Mutation_p.S507L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1594	Extracellular (Potential).|Sushi 9.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCTCAGGGTCGAGGTGCCCTC	0.642000													9	8					0	0	0.000673444	0	0
TESK2	10420	broad.mit.edu	37	1	45923403	45923403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:45923403G>A	uc001cns.1	-	2	458	c.55C>T	c.(55-57)CTT>TTT	p.L19F	TESK2_uc009vxr.1_Missense_Mutation_p.L19F|TESK2_uc010olo.1_Intron|TESK2_uc009vxs.1_5'UTR|TESK2_uc010olp.1_Missense_Mutation_p.L19F	NM_007170	NP_009101	Q96S53	TESK2_HUMAN	testis-specific protein kinase 2	19					actin cytoskeleton organization|focal adhesion assembly|spermatogenesis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(2)|breast(2)|pancreas(1)	5	Acute lymphoblastic leukemia(166;0.155)					AACTCTTCAAGACGCTCCACA	0.448000													37	46					0	0	0.00222228	0	0
DMBX1	127343	broad.mit.edu	37	1	46977754	46977754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:46977754G>A	uc001cpx.2	+	4	752	c.737G>A	c.(736-738)GGG>GAG	p.G246E	DMBX1_uc001cpw.2_Missense_Mutation_p.G241E	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	246					brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GTGGCCCCAGGGGGTGGCCTC	0.627000													49	93					0	0	0.00361006	0	0
YIPF1	54432	broad.mit.edu	37	1	54344369	54344369	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:54344369G>A	uc001cvu.2	-	5	559	c.222C>T	c.(220-222)TCC>TCT	p.S74S	YIPF1_uc001cvv.2_RNA|YIPF1_uc001cvw.2_RNA|YIPF1_uc001cvx.2_RNA|YIPF1_uc001cvy.2_RNA	NM_018982	NP_061855	Q9Y548	YIPF1_HUMAN	Yip1 domain family, member 1	74	Cytoplasmic (Potential).					integral to membrane|transport vesicle				large_intestine(1)|ovary(1)	2						TCCAGAAGGGGGAGCTTTTCT	0.408000													16	39					0	0	0.000566183	0	0
JUN	3725	broad.mit.edu	37	1	59248633	59248633	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:59248633C>A	uc001cze.2	-	1	1153	c.110G>T	c.(109-111)AGC>ATC	p.S37I	uc001czf.2_5'Flank|uc010oop.1_5'Flank	NM_002228	NP_002219	P05412	JUN_HUMAN	jun oncogene	37					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation by host of viral transcription|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|SMAD protein import into nucleus|SMAD protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway		R-SMAD binding|Rho GTPase activator activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription coactivator activity|transcription factor binding|transcription regulatory region DNA binding				0	all_cancers(7;8.55e-07)				Arsenic trioxide(DB01169)|Irbesartan(DB01029)|Vinblastine(DB00570)	CAGGGTCATGCTCTGTTTCAG	0.607000			A		sarcoma								55	61					1.95512e-22	5.41652e-22	0.00361006	1	0
INADL	10207	broad.mit.edu	37	1	62235087	62235087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:62235087G>A	uc001dab.2	+	5	631	c.517G>A	c.(517-519)GCA>ACA	p.A173T	INADL_uc009waf.1_Missense_Mutation_p.A173T|INADL_uc001daa.2_Missense_Mutation_p.A173T|INADL_uc001dad.3_5'Flank	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	173	PDZ 1.				intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						AGGGAGTGTAGCAGACAGGTG	0.398000													50	73					0	0	0.00361006	0	0
JAK1	3716	broad.mit.edu	37	1	65305330	65305330	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:65305330T>A	uc001dbu.1	-	20	3047	c.2798A>T	c.(2797-2799)TAT>TTT	p.Y933F	JAK1_uc009wam.1_Missense_Mutation_p.Y921F|JAK1_uc009wal.1_Missense_Mutation_p.Y110F	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	933	Protein kinase 2.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		GTTCTCATGATAGAGGTTCCT	0.443000			Mis		ALL								45	69					0	0	0.00361006	0	0
PDE4B	5142	broad.mit.edu	37	1	66379000	66379000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:66379000G>A	uc001dcn.2	+	2	194	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PDE4B_uc009war.2_5'UTR|PDE4B_uc001dco.2_Missense_Mutation_p.M1I	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	1					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	CCTCTATAATGAAGAAAAGCA	0.368000													23	36					0	0	0.000720815	0	0
NEGR1	257194	broad.mit.edu	37	1	72241933	72241933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:72241933C>T	uc001dfw.2	-	3	557	c.457G>A	c.(457-459)GGA>AGA	p.G153R	NEGR1_uc001dfv.2_Missense_Mutation_p.G25R|NEGR1_uc010oqs.1_Missense_Mutation_p.G153R	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	153	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		ACGTTGGTTCCTTCATTGACG	0.388000													10	21					0	0	0.000673444	0	0
C1orf173	127254	broad.mit.edu	37	1	75037439	75037439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:75037439C>T	uc001dgg.2	-	14	4174	c.3955G>A	c.(3955-3957)GAC>AAC	p.D1319N		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1319	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CCTTCCATGTCCCCGTCCCCT	0.557000													38	39					0	0	0.00361006	0	0
LRRC8D	55144	broad.mit.edu	37	1	90398923	90398923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:90398923C>T	uc001dnm.2	+	3	721	c.296C>T	c.(295-297)TCC>TTC	p.S99F	LRRC8D_uc001dnn.2_Missense_Mutation_p.S99F	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	99						integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		AACGACATTTCCTTTGGGACA	0.498000													10	4					0	0	0.000673444	0	0
HIPK1	204851	broad.mit.edu	37	1	114515766	114515766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:114515766C>T	uc001eem.2	+	16	3426	c.3265C>T	c.(3265-3267)CCG>TCG	p.P1089S	HIPK1_uc001een.2_Missense_Mutation_p.P1089S|HIPK1_uc001eeo.2_Missense_Mutation_p.P715S|HIPK1_uc001eep.2_Missense_Mutation_p.P695S|HIPK1_uc001eeq.2_Missense_Mutation_p.P381S	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	1089	Interaction with TP53.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCATGGCAGCCCGCTACACTC	0.647000													31	43					0	0	0.00283554	0	0
HSD3B2	3284	broad.mit.edu	37	1	119958112	119958112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:119958112G>A	uc001ehs.2	+	1	843	c.70G>A	c.(70-72)GAA>AAA	p.E24K	HSD3B2_uc001eht.2_Missense_Mutation_p.E24K|HSD3B2_uc001ehu.2_Missense_Mutation_p.E24K	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	24					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	CCTGTTGGTGGAAGAGAAGGA	0.517000													37	44					0	0	0.000953801	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144886268	144886268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:144886268G>A	uc001elw.3	-	23	3257	c.2966C>T	c.(2965-2967)TCC>TTC	p.S989F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.S1055F|PDE4DIP_uc001elv.3_5'UTR	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	989					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		AGAAGGAGGGGAAAAAGATGG	0.473000			T	PDGFRB	MPD								75	275					0	0	0.00361006	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145281564	145281564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:145281564C>T	uc001emn.3	+	4	864	c.494C>T	c.(493-495)TCC>TTC	p.S165F	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Missense_Mutation_p.S165F|NOTCH2NL_uc001emo.2_Missense_Mutation_p.S165F|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	165	EGF-like 5; calcium-binding (Potential).				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						CTGCCTGGTTCCTACCAGTGC	0.577000													79	789					0	0	0.00361006	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	A	A	rs77484671		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:145367767G>A	uc001end.3	+	85	10623	c.10588G>A	c.(10588-10590)GAA>AAA	p.E3530K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3455											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		atcaaagaaggaaagaagaag	0.254000													4	36					0	0	0.00116845	0	0
LOC728989	728989	broad.mit.edu	37	1	146496468	146496468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:146496468G>A	uc001epd.2	-	2	106	c.32C>T	c.(31-33)CCT>CTT	p.P11L		NR_024442				SubName: Full=cDNA FLJ59595, highly similar to Homo sapiens phosphodiesterase 4D interacting protein, transcript variant 1, mRNA;												0						CCGGACTGGAGGGGACACAGC	0.522000													28	30					0	0	0.000878237	0	0
Unknown	0	broad.mit.edu	37	1	148891619	148891619	+	RNA	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:148891619G>A	uc009wkv.1	+	9		c.921G>A								Homo sapiens cDNA, FLJ17483.																		GTTCCAAGAAGAAAACTGTCA	0.418000													15	106					0	0	0.00400662	0	0
FLG2	388698	broad.mit.edu	37	1	152329048	152329048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:152329048G>A	uc001ezw.3	-	3	1287	c.1214C>T	c.(1213-1215)TCA>TTA	p.S405L	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	405	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAAGAGTTTGAAAAGCGGCC	0.433000													34	46					0	0	0.00327116	0	0
S100A16	140576	broad.mit.edu	37	1	153580502	153580502	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:153580502G>A	uc001fcc.2	-	2	259	c.126C>T	c.(124-126)CTC>CTT	p.L42L	S100A16_uc001fcd.1_Silent_p.L42L	NM_080388	NP_525127	Q96FQ6	S10AG_HUMAN	S100 calcium binding protein A16	42	EF-hand 1.					cytosol|nucleolus	calcium ion binding|protein homodimerization activity				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCTCTTTCTGGAGCATCTCGC	0.542000													18	28					0	0	0.00121646	0	0
NUP210L	91181	broad.mit.edu	37	1	154067551	154067551	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:154067551T>C	uc001fdw.2	-	15	2119	c.2047A>G	c.(2047-2049)ATC>GTC	p.I683V	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.I683V	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	683						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			GGCTCCAAGATCCATGGACGA	0.438000													29	34					0	0	0.00127121	0	0
MSTO2P	100129405	broad.mit.edu	37	1	155718531	155718531	+	RNA	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:155718531T>C	uc010pgp.1	+	10		c.1155T>C				NR_024117				Homo sapiens SLTP005 (LST005) mRNA, complete cds.												0						AACACGTTGCTTTGCCCAGTC	0.547000													30	30					0	0	0.00375469	0	0
UBQLN4	56893	broad.mit.edu	37	1	156013850	156013850	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:156013850G>A	uc001fna.2	-	6	1089	c.1065C>T	c.(1063-1065)ACC>ACT	p.T355T	UBQLN4_uc010pgx.1_Silent_p.T335T	NM_020131	NP_064516	Q9NRR5	UBQL4_HUMAN	ataxin-1 ubiquitin-like interacting protein	355						cytosol|endoplasmic reticulum membrane|nucleus	identical protein binding			pancreas(1)|skin(1)	2	Hepatocellular(266;0.133)|all_neural(408;0.195)					GCACCTGGCTGGTCCCCGATC	0.667000													19	24					0	0	0.00188189	0	0
PAQR6	79957	broad.mit.edu	37	1	156214933	156214933	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:156214933C>T	uc001fnu.1	-	6	679	c.609G>A	c.(607-609)CGG>CGA	p.R203R	PAQR6_uc010phf.1_Missense_Mutation_p.G70E|PAQR6_uc001fny.1_5'UTR|PAQR6_uc001fnv.1_Silent_p.R179R|PAQR6_uc010phg.1_Silent_p.R200R|PAQR6_uc001fnx.1_Silent_p.R97R|PAQR6_uc001fnw.1_Silent_p.R97R|PAQR6_uc001fnz.1_Silent_p.R97R|PAQR6_uc010phh.1_Silent_p.R203R|PAQR6_uc001foa.1_Silent_p.R97R|PAQR6_uc001fob.1_RNA	NM_198406	NP_940798	Q6TCH4	PAQR6_HUMAN	progestin and adipoQ receptor family member VI	203	Cytoplasmic (Potential).					integral to membrane	receptor activity				0	Hepatocellular(266;0.158)					GCCTCCTTACCCGATAAAAGA	0.612000													33	36					0	0	0.00428921	0	0
IQGAP3	128239	broad.mit.edu	37	1	156521554	156521554	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:156521554G>A	uc001fpf.2	-	15	1752	c.1677C>T	c.(1675-1677)CTC>CTT	p.L559L	IQGAP3_uc009wsb.1_Silent_p.L516L	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	559					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGGCGACAGGGAGGCTGACAT	0.567000													23	22					0	0	0.000878237	0	0
SPTA1	6708	broad.mit.edu	37	1	158609797	158609797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:158609797C>T	uc001fst.1	-	34	4937	c.4738G>A	c.(4738-4740)GAG>AAG	p.E1580K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1580	Spectrin 15.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCCAGTTGCTCCTAACCCAAG	0.473000													40	85					0	0	0.00148497	0	0
MNDA	4332	broad.mit.edu	37	1	158817534	158817534	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:158817534A>G	uc001fsz.1	+	6	1204	c.1004A>G	c.(1003-1005)AAG>AGG	p.K335R		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	335	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					GTACACAAGAAGAACACAATT	0.363000													29	58					0	0	0.00209593	0	0
CADM3	57863	broad.mit.edu	37	1	159163801	159163801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:159163801G>A	uc001ftl.2	+	5	804	c.662G>A	c.(661-663)AGA>AAA	p.R221K	CADM3_uc009wsy.1_Intron|CADM3_uc001ftk.2_Missense_Mutation_p.R255K	NM_001127173	NP_001120645	Q8N126	CADM3_HUMAN	cell adhesion molecule 3 isoform 2	221	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|heterophilic cell-cell adhesion|homophilic cell adhesion	cell-cell junction|integral to membrane	protein homodimerization activity			ovary(2)	2	all_hematologic(112;0.0429)					GGAGCTGACAGATCCACCTCT	0.502000													39	70					0	0	0.00321405	0	0
NUF2	83540	broad.mit.edu	37	1	163307861	163307861	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:163307861T>A	uc001gcq.1	+	7	787	c.487T>A	c.(487-489)TTA>ATA	p.L163I	NUF2_uc001gcp.2_Missense_Mutation_p.L163I|NUF2_uc001gcr.1_Missense_Mutation_p.L163I|NUF2_uc009wvc.1_Missense_Mutation_p.L163I	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	163	Interaction with the N-terminus of NDC80.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					CCAGGAGGCATTAATGAAACT	0.338000													29	32					0	0	0.0024448	0	0
SEC16B	89866	broad.mit.edu	37	1	177927977	177927977	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:177927977C>A	uc001gli.1	-	9	1222	c.1132G>T	c.(1132-1134)GGG>TGG	p.G378W	SEC16B_uc001glk.1_Missense_Mutation_p.G55W|SEC16B_uc001glh.1_Missense_Mutation_p.G37W|SEC16B_uc009wwz.1_Missense_Mutation_p.G37W|SEC16B_uc001glj.1_Missense_Mutation_p.G379W|SEC16B_uc001gll.3_Missense_Mutation_p.G379W	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	378					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						GAACTTACCCCATTCTGGCGA	0.458000													11	16					3.27435e-08	8.96669e-08	0.00244969	1	0
CFHR5	81494	broad.mit.edu	37	1	196952084	196952084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:196952084C>T	uc001gts.3	+	2	256	c.128C>T	c.(127-129)TCC>TTC	p.S43F		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	43	Sushi 1.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						AACCCTTTTTCCCAAGTTCCT	0.348000													24	78					0	0	0.000720815	0	0
PTPRC	5788	broad.mit.edu	37	1	198665951	198665951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:198665951G>A	uc001gur.1	+	4	385	c.205G>A	c.(205-207)GAG>AAG	p.E69K	PTPRC_uc001gus.1_Missense_Mutation_p.E69K|PTPRC_uc001gut.1_Intron|PTPRC_uc009wze.1_Intron|PTPRC_uc009wzf.1_Intron|PTPRC_uc010ppg.1_Intron|PTPRC_uc001guu.1_Missense_Mutation_p.E112K|PTPRC_uc001guv.1_Intron|PTPRC_uc001guw.1_Intron	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	69	Extracellular (Potential).				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TGACTTCTCAGAGACCACAAC	0.458000													38	101					0	0	0.00148497	0	0
PTPRC	5788	broad.mit.edu	37	1	198685878	198685878	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:198685878G>A	uc001gur.1	+	13	1533	c.1353G>A	c.(1351-1353)ACG>ACA	p.T451T	PTPRC_uc001gus.1_Silent_p.T403T|PTPRC_uc001gut.1_Silent_p.T290T|PTPRC_uc009wzf.1_Silent_p.T339T|PTPRC_uc010ppg.1_Silent_p.T387T	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	451	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						AACCTTATACGAAATATGTTT	0.308000													21	68					0	0	0.00152264	0	0
CACNA1S	779	broad.mit.edu	37	1	201079333	201079333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:201079333G>A	uc001gvv.2	-	2	444	c.217C>T	c.(217-219)CCC>TCC	p.P73S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	73	I.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCCGGCATGGGCAGGTACACG	0.602000													43	90					0	0	0.00361006	0	0
REN	5972	broad.mit.edu	37	1	204125360	204125360	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:204125360G>A	uc001haq.2	-	8	950	c.906C>T	c.(904-906)ACC>ACT	p.T302T		NM_000537	NP_000528	P00797	RENI_HUMAN	renin preproprotein	302					angiotensin maturation|regulation of MAPKKK cascade	extracellular space|membrane	aspartic-type endopeptidase activity			skin(3)|central_nervous_system(1)	4	all_cancers(21;0.00965)|Breast(84;0.116)|all_epithelial(62;0.157)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)		Aliskiren(DB01258)|Remikiren(DB00212)	CTATGGAGCTGGTAGAACCTG	0.582000													85	149					0	0	0.00361006	0	0
LRRN2	10446	broad.mit.edu	37	1	204587039	204587039	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:204587039C>T	uc001hbe.1	-	3	2470	c.2082G>A	c.(2080-2082)AGG>AGA	p.R694R	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Silent_p.R694R|LRRN2_uc009xbf.1_Silent_p.R694R|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	694	Cytoplasmic (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			TGGGCAGCTTCCTCCCTGGAT	0.582000													42	109					0	0	0.00361006	0	0
C4BPA	722	broad.mit.edu	37	1	207297568	207297568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:207297568G>A	uc001hfo.2	+	6	757	c.563G>A	c.(562-564)GGT>GAT	p.G188D		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	188	Sushi 3.				complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						AGGCACAGCGGTGAAGAAAAT	0.478000													34	53					0	0	0.00283554	0	0
TRAF3IP3	80342	broad.mit.edu	37	1	209933708	209933708	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:209933708G>A	uc001hho.2	+	3	614	c.324G>A	c.(322-324)AGG>AGA	p.R108R	TRAF3IP3_uc001hhl.2_Intron|TRAF3IP3_uc001hhm.1_Silent_p.R108R|TRAF3IP3_uc001hhn.2_Intron|TRAF3IP3_uc009xcr.2_Silent_p.R108R	NM_025228	NP_079504	Q9Y228	T3JAM_HUMAN	TRAF3-interacting JNK-activating modulator	108	Cytoplasmic (Potential).					integral to membrane	protein binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.045)		GTGCCAGAAGGATTTCTTCTC	0.612000													7	10					0	0	0.000274275	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213290686	213290686	+	Silent	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:213290686T>C	uc010ptr.1	+	5	565	c.406T>C	c.(406-408)TTA>CTA	p.L136L	RPS6KC1_uc001hkd.2_Silent_p.L124L|RPS6KC1_uc010pts.1_5'UTR|RPS6KC1_uc010ptt.1_5'UTR|RPS6KC1_uc010ptu.1_5'UTR|RPS6KC1_uc010ptv.1_5'UTR|RPS6KC1_uc001hke.2_Intron	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	136					cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		TAGTTCTGAATTAATTGGTCC	0.328000													55	94					0	0	0.00361006	0	0
USH2A	7399	broad.mit.edu	37	1	216496995	216496995	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:216496995C>T	uc001hku.1	-	8	1758	c.1371G>A	c.(1369-1371)CTG>CTA	p.L457L	USH2A_uc001hkv.2_Silent_p.L457L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	457	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTCCAGGTGTCAGGATGCTAA	0.363000										HNSCC(13;0.011)			31	79					0	0	0.00428921	0	0
FMN2	56776	broad.mit.edu	37	1	240371827	240371827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:240371827C>T	uc010pyd.1	+	5	3940	c.3715C>T	c.(3715-3717)CCT>TCT	p.P1239S	FMN2_uc010pye.1_Missense_Mutation_p.P1243S	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1239	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCTCTGCTTCCTGTATCAGG	0.592000													4	21					0	0	0.00024832	0	0
OR2M3	127062	broad.mit.edu	37	1	248366576	248366576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:248366576G>A	uc010pzg.1	+	1	207	c.207G>A	c.(205-207)ATG>ATA	p.M69I		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGTCCCTCATGGACCTCATGC	0.532000													97	238					0	0	0.00361006	0	0
OR2M3	127062	broad.mit.edu	37	1	248367254	248367254	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:248367254G>A	uc010pzg.1	+	1	885	c.885G>A	c.(883-885)AAG>AAA	p.K295K		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCCGCAACAAGGAGGTGACCA	0.458000													38	102					0	0	0.00111076	0	0
OR2T10	127069	broad.mit.edu	37	1	248756492	248756492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:248756492G>A	uc010pzn.1	-	1	578	c.578C>T	c.(577-579)TCA>TTA	p.S193L		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTTGTAAAGTGAGGTGTCTGA	0.463000													29	48					0	0	0.00106085	0	0
RBM17	84991	broad.mit.edu	37	10	6154272	6154272	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:6154272G>A	uc001ijb.2	+	8	1030	c.804G>A	c.(802-804)GAG>GAA	p.E268E	RBM17_uc010qav.1_Silent_p.E268E|RBM17_uc001ijc.2_5'Flank	NM_032905	NP_116294	Q96I25	SPF45_HUMAN	RNA binding motif protein 17	268	G-patch.				mRNA processing|RNA splicing	spliceosomal complex	nucleotide binding|protein binding|RNA binding				0						TGTCAGTGGAGAAGACCAGCA	0.622000													28	3					0	0	0.00127121	0	0
CCDC3	83643	broad.mit.edu	37	10	12940435	12940435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:12940435G>A	uc001ilq.1	-	3	928	c.794C>T	c.(793-795)CCC>CTC	p.P265L	CCDC3_uc009xjb.1_RNA|CCDC3_uc001ilr.2_RNA|CCDC3_uc009xjc.1_RNA	NM_031455	NP_113643	Q9BQI4	CCDC3_HUMAN	coiled-coil domain containing 3 precursor	265						endoplasmic reticulum|extracellular region				ovary(1)	1		Ovarian(717;0.0822)	BRCA - Breast invasive adenocarcinoma(52;0.163)			CAGGTAGGGGGGGCGCACGGG	0.642000													11	2					0	0	0.000978159	0	0
FAM171A1	221061	broad.mit.edu	37	10	15296775	15296775	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:15296775G>A	uc001iob.2	-	4	529	c.522C>T	c.(520-522)TCC>TCT	p.S174S		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	174	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						CCTCCGAAGGGGAGCTGGCGG	0.522000													19	2					0	0	0.00152264	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37447441	37447441	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:37447441G>A	uc001iza.1	+	15	1759	c.1660_splice	c.e15-1	p.A554_splice		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AACCCATTTAGGCTACCTGCG	0.284000													61	13					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	10	49218371	49218371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:49218371G>A	uc001jgd.2	-	8	1927	c.1768C>T	c.(1768-1770)CAT>TAT	p.H590Y	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		CAGGCCAGATGGAGTGCCGTG	0.647000													28	39					0	0	0.00375469	0	0
C10orf71	118461	broad.mit.edu	37	10	50531036	50531036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:50531036C>T	uc010qgp.1	+	3	785	c.446C>T	c.(445-447)TCT>TTT	p.S149F		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	149											0						CTAATTAAATCTTTCGACAGG	0.537000													25	2					0	0	0.00278032	0	0
DKK1	22943	broad.mit.edu	37	10	54076090	54076091	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:54076090_54076091GG>AA	uc001jjr.2	+	3	596_597	c.442_443GG>AA	c.(442-444)GGA>AAA	p.G148K	uc001jjq.1_5'Flank|uc009xox.1_5'Flank	NM_012242	NP_036374	O94907	DKK1_HUMAN	dickkopf homolog 1 precursor	148					negative regulation of peptidyl-serine phosphorylation|negative regulation of protein complex assembly|negative regulation of transcription from RNA polymerase II promoter|positive regulation of heart induction by negative regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization	extracellular space|plasma membrane	growth factor activity|low-density lipoprotein particle receptor binding|receptor antagonist activity|signal transducer activity			ovary(1)|lung(1)|kidney(1)	3						TCATTTCCGAGGAGAAATTGAG	0.396000													23	0					0	0	6.4e-05	0	0
PCDH15	65217	broad.mit.edu	37	10	55600246	55600246	+	Missense_Mutation	SNP	G	A	A	rs111033363	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:55600246G>A	uc001jju.1	-	29	4212	c.3817C>T	c.(3817-3819)CGC>TGC	p.R1273C	PCDH15_uc010qhq.1_Missense_Mutation_p.R1278C|PCDH15_uc010qhr.1_Missense_Mutation_p.R1273C|PCDH15_uc010qhs.1_Missense_Mutation_p.R1285C|PCDH15_uc010qht.1_Missense_Mutation_p.R1280C|PCDH15_uc010qhu.1_Missense_Mutation_p.R1273C|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R1273C|PCDH15_uc010qhw.1_Missense_Mutation_p.R1236C|PCDH15_uc010qhx.1_Missense_Mutation_p.R1202C|PCDH15_uc010qhy.1_Missense_Mutation_p.R1278C|PCDH15_uc010qhz.1_Missense_Mutation_p.R1273C|PCDH15_uc010qia.1_Missense_Mutation_p.R1251C|PCDH15_uc010qib.1_Missense_Mutation_p.R1251C	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1273	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGAACATAGCGATCCAAGATC	0.408000										HNSCC(58;0.16)			10	0					0	0	0.000442599	0	0
PBLD	64081	broad.mit.edu	37	10	70056087	70056087	+	Silent	SNP	C	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:70056087C>A	uc001jns.1	-	4	422	c.219G>T	c.(217-219)GCG>GCT	p.A73A	PBLD_uc001jnr.1_Silent_p.A40A|PBLD_uc001jnt.1_Silent_p.A73A|PBLD_uc001jnu.1_Silent_p.A73A|PBLD_uc001jnv.1_Intron	NM_022129	NP_071412	P30039	PBLD_HUMAN	MAWD binding protein isoform a	73					biosynthetic process		isomerase activity			skin(2)|ovary(1)	3						GGACCTCACTCGCTGGTGTAA	0.453000													15	2					8.00594e-06	2.18819e-05	0.000958276	1	0
STOX1	219736	broad.mit.edu	37	10	70645591	70645591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:70645591C>T	uc001jos.2	+	3	2126	c.2039C>T	c.(2038-2040)CCT>CTT	p.P680L	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Missense_Mutation_p.P570L	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	680						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						GGCGTGAACCCTTTAAGACAA	0.413000													37	4					0	0	0.00428921	0	0
HTR7	3363	broad.mit.edu	37	10	92508762	92508762	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:92508762A>T	uc001kha.2	-	2	1372	c.1129T>A	c.(1129-1131)TCT>ACT	p.S377T	HTR7_uc001kgz.2_Missense_Mutation_p.S377T|HTR7_uc001khb.2_Missense_Mutation_p.S377T	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	377	Helical; Name=7; (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	TTAATGAGAGAGTTTGCATAG	0.527000													69	7					0	0	0.00361006	0	0
C10orf12	26148	broad.mit.edu	37	10	98743303	98743303	+	Missense_Mutation	SNP	C	T	T	rs142303354	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:98743303C>T	uc001kmv.2	+	1	2263	c.2156C>T	c.(2155-2157)TCG>TTG	p.S719L		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	719										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GCACCAAAATCGGTGCCAAGG	0.483000													27	3					0	0	0.00127121	0	0
PKD2L1	9033	broad.mit.edu	37	10	102059380	102059380	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:102059380G>A	uc001kqx.1	-	3	828	c.445C>T	c.(445-447)CAG>TAG	p.Q149*	PKD2L1_uc009xwm.1_Nonsense_Mutation_p.Q102*	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	149	Extracellular (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		CTGATGGCCTGAAAGGAGACT	0.483000													39	2					0	0	0.00170553	0	0
TDRD1	56165	broad.mit.edu	37	10	115963267	115963267	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:115963267G>A	uc001lbg.1	+	8	1075	c.922G>A	c.(922-924)GAA>AAA	p.E308K	TDRD1_uc001lbf.2_Missense_Mutation_p.E299K|TDRD1_uc001lbh.1_Missense_Mutation_p.E299K|TDRD1_uc001lbi.1_Missense_Mutation_p.E299K|TDRD1_uc010qsc.1_Missense_Mutation_p.E17K|TDRD1_uc001lbj.2_Missense_Mutation_p.E17K	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	308					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		AAATGTGCATGAAAAAGACTA	0.363000													27	1					0	0	0.001512	0	0
PDZD8	118987	broad.mit.edu	37	10	119044301	119044302	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:119044301_119044302GG>AA	uc001lde.1	-	5	2141_2142	c.1942_1943CC>TT	c.(1942-1944)CCT>TTT	p.P648F		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	648					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		AAATTGCTTAGGTGCAGCTGCA	0.455000													34	8					0	0	6.4e-05	0	0
OR51B4	79339	broad.mit.edu	37	11	5322770	5322770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:5322770G>A	uc010qza.1	-	1	407	c.407C>T	c.(406-408)TCC>TTC	p.S136F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATCACTCGGGAATTGGTAAG	0.448000													111	6					0	0	0.00361006	0	0
OR52L1	338751	broad.mit.edu	37	11	6007654	6007654	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:6007654C>G	uc001mcd.2	-	1	562	c.507G>C	c.(505-507)AGG>AGC	p.R169S		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	169	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTAGTAATCCCCTCACCAGCA	0.498000													3	73					0	0	6.4e-05	0	0
OR52B2	255725	broad.mit.edu	37	11	6191110	6191110	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:6191110G>A	uc010qzy.1	-	1	447	c.447C>T	c.(445-447)GCC>GCT	p.A149A		NM_001004052	NP_001004052	Q96RD2	O52B2_HUMAN	olfactory receptor, family 52, subfamily B,	149	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;3.69e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGTGATGACGGCCAGAGCAA	0.517000													23	3					0	0	0.00229938	0	0
NELL1	4745	broad.mit.edu	37	11	21250883	21250883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:21250883G>A	uc001mqe.2	+	14	1585	c.1432G>A	c.(1432-1434)GAT>AAT	p.D478N	NELL1_uc001mqf.2_Missense_Mutation_p.D478N|NELL1_uc009yid.2_Missense_Mutation_p.D506N|NELL1_uc010rdo.1_Missense_Mutation_p.D421N|NELL1_uc010rdp.1_Missense_Mutation_p.D238N	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	478	EGF-like 3.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						AACAGAACACGATGAATGTGG	0.463000													33	4					0	0	0.00375469	0	0
ACP2	53	broad.mit.edu	37	11	47269227	47269227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:47269227G>A	uc001nei.2	-	3	379	c.262C>T	c.(262-264)CAC>TAC	p.H88Y	ACP2_uc010rhe.1_Missense_Mutation_p.H60Y|ACP2_uc009ylj.2_Missense_Mutation_p.H16Y|ACP2_uc010rhf.1_Missense_Mutation_p.H56Y|ACP2_uc010rhg.1_Missense_Mutation_p.H88Y|ACP2_uc010rhh.1_5'UTR|ACP2_uc010rhi.1_5'UTR|ACP2_uc009ylk.2_Missense_Mutation_p.H88Y|ACP2_uc010rhj.1_Missense_Mutation_p.H88Y|NR1H3_uc009yll.1_5'Flank|NR1H3_uc010rhk.1_5'Flank|NR1H3_uc001nek.2_5'Flank|NR1H3_uc001nej.2_5'Flank|NR1H3_uc001nel.2_5'Flank	NM_001610	NP_001601	P11117	PPAL_HUMAN	acid phosphatase 2, lysosomal isoform 1	88	Lumenal (Potential).					integral to membrane|lysosomal lumen|lysosomal membrane	acid phosphatase activity			ovary(1)	1						AGGAAGCCGTGATAGCGCTGC	0.587000													50	4					0	0	0.00361006	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57068452	57068452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:57068452G>A	uc001njr.2	-	9	5347	c.5035C>T	c.(5035-5037)CAG>TAG	p.Q1679*	TNKS1BP1_uc001njp.2_Nonsense_Mutation_p.Q251*|TNKS1BP1_uc001njq.2_Nonsense_Mutation_p.Q252*|TNKS1BP1_uc001njs.2_Nonsense_Mutation_p.Q1679*	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1679	Arg/Glu/Lys-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GACTCCTTCTGGCTCGACTTG	0.587000													37	1					0	0	0.00170553	0	0
OR5B12	390191	broad.mit.edu	37	11	58206830	58206830	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:58206830G>A	uc010rkh.1	-	1	795	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CTGTGCCCATGAAATGGCTGG	0.453000													38	2					0	0	0.00170553	0	0
LGALS12	85329	broad.mit.edu	37	11	63276333	63276333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:63276333C>T	uc001nxa.2	+	3	649	c.308C>T	c.(307-309)ACC>ATC	p.T103I	LGALS12_uc001nxb.2_Missense_Mutation_p.T103I|LGALS12_uc001nxc.2_Missense_Mutation_p.T104I|LGALS12_uc001nxd.2_Missense_Mutation_p.T42I|LGALS12_uc001nxe.2_Missense_Mutation_p.T42I|LGALS12_uc009yot.2_Missense_Mutation_p.T63I	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	103	Galectin 1.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						TTCCATACCACCAAGCCCCAT	0.622000													50	5					0	0	0.00361006	0	0
SF3B2	10992	broad.mit.edu	37	11	65826341	65826342	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:65826341_65826342CC>TT	uc001ogy.1	+	10	1047_1048	c.1007_1008CC>TT	c.(1006-1008)CCC>CTT	p.P336L		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	336					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						AAGAAAAAGCCCCAGCGGGTGC	0.569000													14	24					0	0	6.4e-05	0	0
XRRA1	143570	broad.mit.edu	37	11	74570238	74570238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:74570238G>A	uc009yub.2	-	12	1443	c.1111C>T	c.(1111-1113)CCA>TCA	p.P371S	XRRA1_uc001ovm.2_Intron|XRRA1_uc001ovn.2_Intron|XRRA1_uc001ovo.2_Intron|XRRA1_uc001ovq.3_Intron|XRRA1_uc001ovp.3_Intron|XRRA1_uc001ovr.2_Intron|XRRA1_uc001ovt.2_Missense_Mutation_p.P124L|XRRA1_uc001ovs.1_Intron	NM_182969	NP_892014	Q6P2D8	XRRA1_HUMAN	X-ray radiation resistance associated 1	371					response to X-ray	cytoplasm|nucleus				central_nervous_system(1)	1						CTCAGCTCTGGGAAGGGTGGG	0.517000													19	0					0	0	0.00121646	0	0
FAT3	120114	broad.mit.edu	37	11	92085877	92085877	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:92085877A>G	uc001pdj.3	+	1	616	c.599A>G	c.(598-600)AAA>AGA	p.K200R		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	200	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTAAAAATAAAGTTGATCTC	0.393000										TCGA Ovarian(4;0.039)			509	26					0	0	0.00361006	0	0
FOLR4	390243	broad.mit.edu	37	11	94040458	94040458	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:94040458G>A	uc010rud.1	+	3	455	c.455G>A	c.(454-456)TGG>TAG	p.W152*		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	159						extracellular region	folic acid binding|receptor activity			ovary(1)	1						GGCTGGGACTGGAGTCAGGGT	0.587000													17	1					0	0	0.00121646	0	0
CNTN5	53942	broad.mit.edu	37	11	100169975	100169975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:100169975G>A	uc001pga.2	+	20	2806	c.2467G>A	c.(2467-2469)GAA>AAA	p.E823K	CNTN5_uc001pfz.2_Missense_Mutation_p.E823K|CNTN5_uc001pgb.2_Missense_Mutation_p.E749K|CNTN5_uc010ruk.1_Missense_Mutation_p.E94K	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	823	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TGGCTGGAAGGAAAAAATGGT	0.408000													43	3					0	0	0.00195071	0	0
MMP1	4312	broad.mit.edu	37	11	102661492	102661492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:102661492C>T	uc001phi.2	-	9	1385	c.1242G>A	c.(1240-1242)ATG>ATA	p.M414I	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.M348I	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	414	Hemopexin-like 3.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		CATGTGCTATCATTTTGGGAT	0.383000													99	5					0	0	0.00361006	0	0
ASAM	79827	broad.mit.edu	37	11	122955333	122955333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr11:122955333C>T	uc001pyt.2	-	3	634	c.275G>A	c.(274-276)GGA>GAA	p.G92E		NM_024769	NP_079045	Q9H6B4	CLMP_HUMAN	adipocyte-specific adhesion molecule precursor	92	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|tight junction					0		Breast(109;0.0025)|Lung NSC(97;0.0179)|all_lung(97;0.0182)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.73e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0446)		GGAGGCATCTCCTGCCAGGAA	0.512000													49	2					0	0	0.00361006	0	0
LAG3	3902	broad.mit.edu	37	12	6886466	6886466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:6886466G>A	uc001qqt.3	+	6	1443	c.1094G>A	c.(1093-1095)GGG>GAG	p.G365E	LAG3_uc001qqu.2_Missense_Mutation_p.G195E	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	365	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane	antigen binding|MHC class II protein binding				0						GGATCCCTGGGGAAGCTGCTT	0.517000													61	61					0	0	0.00361006	0	0
CD163	9332	broad.mit.edu	37	12	7640469	7640469	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:7640469G>A	uc001qsz.3	-	7	1763	c.1635C>T	c.(1633-1635)TTC>TTT	p.F545F	CD163_uc001qta.3_Silent_p.F545F|CD163_uc009zfw.2_Silent_p.F545F	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	545	SRCR 5.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCTCACACTGGAATTCTTCAG	0.532000													29	34					0	0	0.00106085	0	0
GDF3	9573	broad.mit.edu	37	12	7848166	7848166	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:7848166T>G	uc001qte.2	-	1	195	c.159A>C	c.(157-159)AAA>AAC	p.K53N		NM_020634	NP_065685	Q9NR23	GDF3_HUMAN	growth differentiation factor 3 precursor	53					eye development|growth|skeletal system development	extracellular space	cytokine activity|growth factor activity			skin(3)|ovary(1)|lung(1)|central_nervous_system(1)	6						CCTGGAAAATTTTCTTCAAGA	0.502000													23	24					0	0	0.00229938	0	0
SLC2A14	144195	broad.mit.edu	37	12	7966957	7966957	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:7966957C>T	uc001qtk.2	-	16	2311	c.1518G>A	c.(1516-1518)GGG>GGA	p.G506G	SLC2A14_uc001qtl.2_Silent_p.G483G|SLC2A14_uc001qtm.2_Silent_p.G483G|SLC2A14_uc010sgg.1_Silent_p.G397G|SLC2A14_uc001qtn.2_Silent_p.G506G|SLC2A14_uc001qto.2_Silent_p.G141G|SLC2A14_uc010sgh.1_Silent_p.G521G	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	506	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		TGCTGTTCATCCCCATGACGC	0.572000													19	77					0	0	0.00375469	0	0
SLC2A3	6515	broad.mit.edu	37	12	8074054	8074054	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:8074054C>T	uc001qtr.2	-	10	1708	c.1446G>A	c.(1444-1446)GAG>GAA	p.E482E		NM_006931	NP_008862	P11169	GTR3_HUMAN	solute carrier family 2 (facilitated glucose	482	Cytoplasmic (Potential).				carbohydrate metabolic process|water-soluble vitamin metabolic process	integral to membrane|plasma membrane	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			ovary(3)|pancreas(1)	4				Kidney(36;0.0866)		TGCTGTTCATCTCCATGACGC	0.567000													53	202					0	0	0.00361006	0	0
CLEC1A	51267	broad.mit.edu	37	12	10233946	10233946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:10233946C>T	uc001qxb.2	-	3	365	c.281G>A	c.(280-282)GGA>GAA	p.G94E	CLEC1A_uc009zhf.2_Missense_Mutation_p.G6E|CLEC1A_uc001qxc.2_Missense_Mutation_p.G6E|CLEC1A_uc001qxd.2_Missense_Mutation_p.G51E|CLEC1A_uc010sgx.1_Intron	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	94	Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						GGACGTATTTCCTAATCTTTC	0.423000													24	47					0	0	0.00332997	0	0
PRB2	653247	broad.mit.edu	37	12	11546165	11546165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:11546165G>A	uc010shk.1	-	3	882	c.847C>T	c.(847-849)CCA>TCA	p.P283S		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGTCCTTGTGGCTTTCCTGGA	0.612000													73	115					0	0	0.00361006	0	0
MGST1	4257	broad.mit.edu	37	12	16510602	16510602	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:16510602C>T	uc001rdf.2	+	3	255	c.190C>T	c.(190-192)CGA>TGA	p.R64*	MGST1_uc001rdg.2_Nonsense_Mutation_p.R64*|MGST1_uc009zih.1_RNA|MGST1_uc001rdh.2_Nonsense_Mutation_p.R64*|MGST1_uc001rdi.2_Nonsense_Mutation_p.R64*	NM_145792	NP_665735	P10620	MGST1_HUMAN	microsomal glutathione S-transferase 1	64	Helical; (By similarity).				protein homotrimerization|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane	glutathione transferase activity				0		Hepatocellular(102;0.121)			Glutathione(DB00143)	GAAGTATCTTCGAACAGATGA	0.358000													7	15					0	0	0.00307968	0	0
C12orf11	55726	broad.mit.edu	37	12	27067474	27067475	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:27067474_27067475GG>AA	uc001rhk.3	-	12	1822_1823	c.1285_1286CC>TT	c.(1285-1287)CCT>TTT	p.P429F	C12orf11_uc001rhj.3_Intron|C12orf11_uc010sjk.1_Missense_Mutation_p.P328F	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	429					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					GTCTAGAAAAGGAGTTAATCTG	0.347000													12	19					0	0	6.4e-05	0	0
SYT10	341359	broad.mit.edu	37	12	33560122	33560122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:33560122C>T	uc001rll.1	-	3	976	c.679G>A	c.(679-681)GAA>AAA	p.E227K	SYT10_uc009zju.1_Missense_Mutation_p.E37K	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	227	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTGACATCTTCGTTTTGGTTG	0.383000													22	46					0	0	0.00229938	0	0
KIF21A	55605	broad.mit.edu	37	12	39726502	39726502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:39726502G>A	uc001rly.2	-	20	2893	c.2747C>T	c.(2746-2748)TCC>TTC	p.S916F	KIF21A_uc001rlv.2_5'Flank|KIF21A_uc001rlw.2_Missense_Mutation_p.S233F|KIF21A_uc001rlx.2_Missense_Mutation_p.S903F|KIF21A_uc001rlz.2_Missense_Mutation_p.S880F|KIF21A_uc010skl.1_Missense_Mutation_p.S903F	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	916					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				AGCTGTCTTGGAAATAAACAC	0.408000													28	31					0	0	0.00127121	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43858525	43858525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:43858525C>T	uc010skx.1	-	10	1378	c.1378G>A	c.(1378-1380)GGG>AGG	p.G460R		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	460	Peptidase M12B.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AGACATTCCCCGTAACCAGTA	0.358000													27	22					0	0	0.000878237	0	0
COL2A1	1280	broad.mit.edu	37	12	48379540	48379540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:48379540G>A	uc001rqu.2	-	25	1832	c.1651C>T	c.(1651-1653)CCT>TCT	p.P551S	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.P482S	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	551	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGTTCTCCAGGACGGCCAGGG	0.647000													16	13					0	0	0.000958276	0	0
KRT7	3855	broad.mit.edu	37	12	52642524	52642524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:52642524C>T	uc001saa.1	+	9	1517	c.1390C>T	c.(1390-1392)CGC>TGC	p.R464C	KRT86_uc010snq.1_5'Flank	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	464	Tail.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		ATCCGCCAGTCGCAGGAGTGC	0.647000													9	18					0	0	0.000442599	0	0
KRT73	319101	broad.mit.edu	37	12	53009995	53009995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:53009995G>A	uc001sas.2	-	2	652	c.617C>T	c.(616-618)TCG>TTG	p.S206L		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	206	Coil 1B.|Rod.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCTCAGCTCCGAGTCCAGCCT	0.607000													48	57					0	0	0.00361006	0	0
OR6C2	341416	broad.mit.edu	37	12	55846490	55846490	+	Missense_Mutation	SNP	G	A	A	rs140332483		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:55846490G>A	uc001sgz.1	+	1	493	c.493G>A	c.(493-495)GAA>AAA	p.E165K		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.E165K(1)		skin(2)	2						CCTCCAGCTCGAATTCTGTGA	0.448000													46	73					0	0	0.00361006	0	0
HSD17B6	8630	broad.mit.edu	37	12	57167947	57167947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:57167947G>A	uc001smg.1	+	2	421	c.311G>A	c.(310-312)AGA>AAA	p.R104K		NM_003725	NP_003716	O14756	H17B6_HUMAN	hydroxysteroid (17-beta) dehydrogenase 6	104					androgen biosynthetic process|androgen catabolic process	early endosome membrane|endoplasmic reticulum|microsome	binding|electron carrier activity|estradiol 17-beta-dehydrogenase activity|retinol dehydrogenase activity|testosterone 17-beta-dehydrogenase (NAD+) activity			upper_aerodigestive_tract(1)|pancreas(1)	2					Succinic acid(DB00139)	GTGGGGGACAGAGGTATGAAA	0.373000													14	23					0	0	0.00244969	0	0
Unknown	0	broad.mit.edu	37	12	63359404	63359404	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:63359404G>A	uc001srn.1	+	1	305	c.300G>A	c.(298-300)AGG>AGA	p.R100R						SubName: Full=Putative uncharacterized protein RPL14P1;																		CCAGAGAAAGGAAAGCCAAGA	0.428000													23	9					0	0	0.00229938	0	0
TPH2	121278	broad.mit.edu	37	12	72388322	72388322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:72388322G>A	uc009zrw.1	+	8	1186	c.1045G>A	c.(1045-1047)GAA>AAA	p.E349K	TPH2_uc001swy.2_Missense_Mutation_p.E259K	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	349					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	AGCATCAGATGAAGATGTTCA	0.413000													29	36					0	0	0.00127121	0	0
NAV3	89795	broad.mit.edu	37	12	78573376	78573376	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:78573376G>C	uc001syp.2	+	29	5604	c.5431G>C	c.(5431-5433)GAA>CAA	p.E1811Q	NAV3_uc001syo.2_Missense_Mutation_p.E1789Q|NAV3_uc010sub.1_Missense_Mutation_p.E1268Q|NAV3_uc009zsf.2_Missense_Mutation_p.E620Q	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1811	Potential.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						CAGAGAAAAGGAATTAAAATT	0.483000										HNSCC(70;0.22)			33	46					0	0	0.00327116	0	0
LTA4H	4048	broad.mit.edu	37	12	96396801	96396801	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:96396801A>G	uc001ten.1	-	18	1723	c.1655T>C	c.(1654-1656)ATT>ACT	p.I552T	LTA4H_uc010suy.1_Missense_Mutation_p.I514T|LTA4H_uc010suz.1_Silent_p.N486N|LTA4H_uc010sva.1_RNA	NM_000895	NP_000886	P09960	LKHA4_HUMAN	leukotriene A4 hydrolase	552					hormone biosynthetic process|inflammatory response|leukotriene biosynthetic process|peptide catabolic process|prostanoid metabolic process|proteolysis	cytosol|nucleus	aminopeptidase activity|epoxide hydrolase activity|leukotriene-A4 hydrolase activity|metallopeptidase activity|protein binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(1)	1						CGCCAAAGGAATTGCGTCCTC	0.473000													7	12					0	0	0.000274275	0	0
SLC25A3	5250	broad.mit.edu	37	12	98995011	98995011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:98995011G>A	uc001tfo.2	+	7	1000	c.880G>A	c.(880-882)GAA>AAA	p.E294K	SLC25A3_uc001tfm.2_Missense_Mutation_p.E293K|SLC25A3_uc001tfn.2_Missense_Mutation_p.E293K|SLC25A3_uc001tfp.2_Missense_Mutation_p.E293K|SLC25A3_uc001tfq.2_Missense_Mutation_p.E163K|SLC25A3_uc001tfr.2_Missense_Mutation_p.E294K|SLC25A3_uc001tfs.2_Missense_Mutation_p.E250K|SLC25A3_uc009ztn.2_Intron|SLC25A3_uc001tft.2_Missense_Mutation_p.E293K	NM_005888	NP_005879	Q00325	MPCP_HUMAN	solute carrier family 25 member 3 isoform a	294	Solcar 3.|Mitochondrial matrix (Potential).				generation of precursor metabolites and energy	integral to plasma membrane|mitochondrial inner membrane	phosphate carrier activity|symporter activity				0		Lung NSC(355;4.08e-05)|Breast(359;0.00191)|Colorectal(145;0.00205)|Myeloproliferative disorder(1001;0.0255)		GBM - Glioblastoma multiforme(134;1.36e-23)|BRCA - Breast invasive adenocarcinoma(302;0.000115)		GTTGAATAAAGAAAAAGGTAG	0.378000													22	20					0	0	0.00395357	0	0
CUX2	23316	broad.mit.edu	37	12	111746297	111746297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:111746297C>T	uc001tsa.1	+	14	1378	c.1225C>T	c.(1225-1227)CTT>TTT	p.L409F		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	409						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCAGAAATTCCTTCTGGAGAA	0.617000													10	4					0	0	0.00136819	0	0
DIABLO	56616	broad.mit.edu	37	12	122693123	122693123	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:122693123G>A	uc010tab.1	-	7	1330	c.525C>T	c.(523-525)GGC>GGT	p.G175G	DIABLO_uc010taa.1_Silent_p.G122G|DIABLO_uc010tac.1_RNA|DIABLO_uc010tad.1_Silent_p.G131G|VPS33A_uc001ucc.2_RNA	NM_019887	NP_063940	Q9NR28	DBLOH_HUMAN	diablo isoform 1 precursor	175					activation of caspase activity by cytochrome c|induction of apoptosis via death domain receptors	CD40 receptor complex|cytosol|internal side of plasma membrane|mitochondrial intermembrane space	protein binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000302)|Epithelial(86;0.00051)|BRCA - Breast invasive adenocarcinoma(302;0.223)		CCTGATCTGCGCCTGCCAAAA	0.592000													7	13					0	0	0.00307968	0	0
DNAH10	196385	broad.mit.edu	37	12	124383306	124383306	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:124383306G>A	uc001uft.3	+	55	9256	c.9231G>A	c.(9229-9231)GAG>GAA	p.E3077E		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3077	Potential.|Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGCTGGCGGAGAAGTCCGCCG	0.642000													5	6					0	0	0.000602214	0	0
ZNF664	144348	broad.mit.edu	37	12	124496987	124496987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:124496987G>A	uc001ufz.2	+	6	2126	c.296G>A	c.(295-297)AGC>AAC	p.S99N	ZNF664_uc001uga.2_Missense_Mutation_p.S99N|ZNF664_uc001ugb.2_Missense_Mutation_p.S99N	NM_152437	NP_689650	Q8N3J9	ZN664_HUMAN	zinc finger protein 664	99	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.000239)|OV - Ovarian serous cystadenocarcinoma(86;0.000247)|all cancers(50;0.00155)|BRCA - Breast invasive adenocarcinoma(302;0.249)		TTCAATTGGAGCTCCCATCTT	0.393000													29	39					0	0	0.00127121	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834558	125834558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:125834558G>A	uc001uhe.1	+	2	621	c.613G>A	c.(613-615)GAG>AAG	p.E205K		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	205	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		ACCAGAGGAGGAGATCCCAGC	0.647000													18	25					0	0	0.00121646	0	0
EP400	57634	broad.mit.edu	37	12	132547093	132547093	+	Silent	SNP	A	G	G	rs28513925	by1000genomes	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr12:132547093A>G	uc001ujn.2	+	46	8216	c.8181A>G	c.(8179-8181)CAA>CAG	p.Q2727Q	EP400_uc001ujl.2_Silent_p.Q2726Q|EP400_uc001ujm.2_Silent_p.Q2646Q|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2763	Poly-Gln.|Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcaacaacagcagcagc	0.294000													5	34					0	0	0.000602214	0	0
ZDHHC20	253832	broad.mit.edu	37	13	21955617	21955617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr13:21955617G>A	uc001uob.2	-	11	1126	c.1013C>T	c.(1012-1014)TCT>TTT	p.S338F	ZDHHC20_uc001uod.2_RNA|ZDHHC20_uc001uoc.2_RNA|ZDHHC20_uc001uoe.2_RNA|ZDHHC20_uc010tcs.1_Missense_Mutation_p.S276F	NM_153251	NP_694983	Q5W0Z9	ZDH20_HUMAN	zinc finger, DHHC-type containing 20	339						integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)	1		all_cancers(29;8.1e-16)|all_epithelial(30;3.63e-14)|all_lung(29;2.04e-13)|Lung SC(185;0.0367)		all cancers(112;0.000268)|Epithelial(112;0.000735)|OV - Ovarian serous cystadenocarcinoma(117;0.00517)|Lung(94;0.171)		CAGCCACTGAGATTCACTGTC	0.393000													7	21					0	0	0.000274275	0	0
FGF9	2254	broad.mit.edu	37	13	22255210	22255210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr13:22255210G>A	uc001uog.2	+	2	1144	c.307G>A	c.(307-309)GGC>AGC	p.G103S		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	103					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		TATAGCAGTGGGCCTGGTCAG	0.512000													53	69					0	0	0.00361006	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24895621	24895621	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr13:24895621G>A	uc001upj.2	+	4	778	c.717G>A	c.(715-717)GGG>GGA	p.G239G	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	239	C1q.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		CAGCAGCGGGGAAATTCACGT	0.418000													54	90					0	0	0.00361006	0	0
LHFP	10186	broad.mit.edu	37	13	40175225	40175225	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr13:40175225G>A	uc001uxf.2	-	2	640	c.129C>T	c.(127-129)TCC>TCT	p.S43S		NM_005780	NP_005771	Q9Y693	LHFP_HUMAN	lipoma HMGIC fusion partner precursor	43						integral to membrane	DNA binding		HMGA2/LHFP(2)	soft_tissue(2)|lung(1)|breast(1)	4		Lung NSC(96;3.55e-06)|Breast(139;0.00408)|Ovarian(182;0.0107)|Prostate(109;0.0118)|Lung SC(185;0.0719)|Hepatocellular(188;0.114)		OV - Ovarian serous cystadenocarcinoma(117;6.48e-46)|Epithelial(112;8.43e-42)|all cancers(112;1.42e-36)|GBM - Glioblastoma multiforme(144;0.00187)|BRCA - Breast invasive adenocarcinoma(63;0.00886)|KIRC - Kidney renal clear cell carcinoma(186;0.048)|Kidney(163;0.0601)|LUSC - Lung squamous cell carcinoma(192;0.105)		AGGTACCGAAGGACACAGGCT	0.552000			T	HMGA2	lipoma								63	10					0	0	0.00361006	0	0
POTEG	404785	broad.mit.edu	37	14	19553777	19553777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:19553777G>A	uc001vuz.1	+	1	413	c.361G>A	c.(361-363)GGA>AGA	p.G121R	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	121										ovary(1)	1						GGGCCCTTGGGGAGACTACGA	0.602000													52	360					0	0	0.00361006	0	0
OR4M1	441670	broad.mit.edu	37	14	20248981	20248981	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:20248981C>T	uc010tku.1	+	1	500	c.500C>T	c.(499-501)CCT>CTT	p.P167L		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTTCGACTTCCTTTCTGTGGG	0.493000													55	94					0	0	0.00361006	0	0
OR4N2	390429	broad.mit.edu	37	14	20296087	20296087	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:20296087G>A	uc010tkv.1	+	1	480	c.480G>A	c.(478-480)GTG>GTA	p.V160V		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTATCCAGGTGGTCCTCATCC	0.532000													58	78					0	0	0.00361006	0	0
OR11G2	390439	broad.mit.edu	37	14	20666407	20666407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:20666407G>A	uc010tlb.1	+	1	913	c.913G>A	c.(913-915)GAA>AAA	p.E305K		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	305	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		atctaagaatgaagctggaaa	0.264000													54	8					0	0	0.00361006	0	0
MYH6	4624	broad.mit.edu	37	14	23857130	23857130	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:23857130G>A	uc001wjv.2	-	31	4429	c.4362C>T	c.(4360-4362)ATC>ATT	p.I1454I		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1454	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		ACTCGGCCAGGATCTGCCCGG	0.627000													13	1					0	0	0.00244969	0	0
NOVA1	4857	broad.mit.edu	37	14	26917477	26917477	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:26917477G>A	uc001wpy.2	-	5	1530	c.1212C>T	c.(1210-1212)CCC>CCT	p.P404P	NOVA1_uc001wpz.2_Silent_p.P380P|NOVA1_uc001wqa.2_Silent_p.P282P	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	407	Ala-rich.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		TGGCAGCTAGGGGAGAAGCAG	0.502000													23	3					0	0	0.00106085	0	0
SLC25A21	89874	broad.mit.edu	37	14	37203731	37203731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:37203731G>A	uc001wtz.1	-	4	561	c.251C>T	c.(250-252)ACC>ATC	p.T84I		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	84	Solcar 1.|Helical; Name=2; (Potential).				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		TCTTTTTGGGGTTTCAGCCAA	0.393000													5	2					0	0	0.00198382	0	0
C14orf43	91748	broad.mit.edu	37	14	74196579	74196579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:74196579G>A	uc001xot.2	-	4	2642	c.1859C>T	c.(1858-1860)GCC>GTC	p.A620V	C14orf43_uc001xos.2_5'Flank|C14orf43_uc001xou.2_Missense_Mutation_p.A620V|C14orf43_uc010tud.1_Missense_Mutation_p.A620V|C14orf43_uc010arw.2_RNA	NM_194278	NP_919254	Q6PJG2	CN043_HUMAN	hypothetical protein LOC91748	620					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00358)|KIRC - Kidney renal clear cell carcinoma(182;0.0878)|OV - Ovarian serous cystadenocarcinoma(108;0.115)		GACGGGAGGGGCGATGAAAGT	0.632000													20	3					0	0	0.00278032	0	0
ENTPD5	957	broad.mit.edu	37	14	74436806	74436806	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:74436806G>A	uc010tuo.1	-	15	1418	c.1107C>T	c.(1105-1107)TTC>TTT	p.F369F	ENTPD5_uc001xpi.2_Silent_p.F369F	NM_001249	NP_001240	O75356	ENTP5_HUMAN	ectonucleoside triphosphate diphosphohydrolase 5	369					'de novo' posttranslational protein folding|ATP metabolic process|cell growth|cell proliferation|glycolysis|protein N-linked glycosylation|regulation of phosphatidylinositol 3-kinase cascade	endoplasmic reticulum lumen	guanosine-diphosphatase activity|uridine-diphosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00394)		TGCCTGAGGTGAAGTTTTCCA	0.448000													24	3					0	0	0.000720815	0	0
SERPINA4	5267	broad.mit.edu	37	14	95035894	95035894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:95035894C>T	uc001ydk.2	+	5	1312	c.1246C>T	c.(1246-1248)CTC>TTC	p.L416F	SERPINA4_uc010avd.2_Missense_Mutation_p.L453F|SERPINA4_uc001ydl.2_Missense_Mutation_p.L416F	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	416					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		CCAGAGTGTCCTCTTTCTGGG	0.577000													35	3					0	0	0.00170553	0	0
GOLGA6L6	727832	broad.mit.edu	37	15	20743947	20743947	+	Silent	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:20743947A>G	uc001ytk.2	-	3	436	c.345T>C	c.(343-345)CAT>CAC	p.H115H		NM_001145004	NP_001138476	A8MZA4	GG6L6_HUMAN	golgi autoantigen, golgin subfamily a, 6-like 6	115	Potential.										0						CCTGATGTTGATGGCTTGCCT	0.512000													3	13					0	0	0.00024832	0	0
HERC2	8924	broad.mit.edu	37	15	28419673	28419674	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:28419673_28419674GG>AA	uc001zbj.2	-	65	10030_10031	c.9924_9925CC>TT	c.(9922-9927)GGCCAG>GGTTAG	p.Q3309*		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3309	RCC1 12.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		GTGATCTTCTGGCCTTCTAAGC	0.599000													21	30					0	0	6.4e-05	0	0
THBS1	7057	broad.mit.edu	37	15	39882059	39882059	+	Silent	SNP	C	T	T	rs148609363		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:39882059C>T	uc001zkh.2	+	13	2159	c.1980C>T	c.(1978-1980)AAC>AAT	p.N660N	THBS1_uc010bbi.2_Silent_p.N132N	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	660	EGF-like 3.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GCAACAAGAACGCCAAGTGCA	0.582000													7	11					0	0	0.000274275	0	0
C15orf23	90417	broad.mit.edu	37	15	40675107	40675107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:40675107C>T	uc001zll.2	+	1	186	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C15orf23_uc010ucp.1_Missense_Mutation_p.S24F|C15orf23_uc001zlo.2_Missense_Mutation_p.S24F|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	24						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GAGTGCGATTCCCACCCACTT	0.567000													21	15					0	0	0.00121646	0	0
UNC13C	440279	broad.mit.edu	37	15	54556559	54556559	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:54556559G>A	uc002ack.2	+	7	3642	c.3642G>A	c.(3640-3642)GGG>GGA	p.G1214G	UNC13C_uc002acl.2_Silent_p.G44G	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1214	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TACTGGATGGGACATCTAAGT	0.343000													4	6					0	0	0.00024832	0	0
CGNL1	84952	broad.mit.edu	37	15	57744419	57744419	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:57744419G>A	uc002aeg.2	+	6	2062	c.1986G>A	c.(1984-1986)GTG>GTA	p.V662V	CGNL1_uc010bfw.2_Silent_p.V662V	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	662	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		ACGAAAAGGTGGAGGAGAACT	0.483000													15	25					0	0	0.00316338	0	0
GCOM1	145781	broad.mit.edu	37	15	57910309	57910309	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:57910309C>T	uc002aei.2	+	3	360	c.241C>T	c.(241-243)CAA>TAA	p.Q81*	GCOM1_uc002aej.2_Nonsense_Mutation_p.Q81*|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Nonsense_Mutation_p.Q81*|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Nonsense_Mutation_p.Q81*|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	81					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						AAGATCAGATCAAAATCAGCA	0.423000													19	23					0	0	0.000958276	0	0
RNF111	54778	broad.mit.edu	37	15	59359153	59359153	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:59359153C>T	uc002afv.2	+	6	1836	c.1557C>T	c.(1555-1557)CAC>CAT	p.H519H	RNF111_uc002afs.2_Silent_p.H519H|RNF111_uc002aft.2_Silent_p.H519H|RNF111_uc002afu.2_Silent_p.H519H|RNF111_uc002afw.2_Silent_p.H519H|RNF111_uc002afx.2_Silent_p.H46H	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	519	His-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		ACCACCACCACCATACTCCCC	0.498000													25	45					0	0	0.000878237	0	0
CORO2B	10391	broad.mit.edu	37	15	69006963	69006963	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:69006963C>T	uc002arj.3	+	7	860	c.831C>T	c.(829-831)TTC>TTT	p.F277F	CORO2B_uc010bic.2_Silent_p.F272F|CORO2B_uc002ark.2_Silent_p.F44F	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	277	WD 5.				actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						TGTTCCCCTTCTATGATGCTG	0.602000													50	74					0	0	0.00361006	0	0
MYO9A	4649	broad.mit.edu	37	15	72190181	72190181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:72190181C>T	uc002atl.3	-	25	5136	c.4663G>A	c.(4663-4665)GAG>AAG	p.E1555K	MYO9A_uc010biq.2_Missense_Mutation_p.E1175K|MYO9A_uc002atn.1_Missense_Mutation_p.E1536K|MYO9A_uc002atk.2_Missense_Mutation_p.E279K|MYO9A_uc002atm.1_Missense_Mutation_p.E279K	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1555	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GATGGCCTCTCTACTCTTTGC	0.423000													24	22					0	0	0.000720815	0	0
SNX33	257364	broad.mit.edu	37	15	75941737	75941737	+	Silent	SNP	G	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:75941737G>C	uc002bau.2	+	1	390	c.294G>C	c.(292-294)GGG>GGC	p.G98G	IMP3_uc002bat.2_5'Flank|SNX33_uc002bav.2_5'Flank	NM_153271	NP_695003	Q8WV41	SNX33_HUMAN	sorting nexin 33	98					cell communication		phosphatidylinositol binding|protein binding			ovary(1)	1						GGAGTGGTGGGGGCAGTGGCT	0.612000													3	65					0	0	0.00024832	0	0
CSPG4	1464	broad.mit.edu	37	15	75979994	75979994	+	Missense_Mutation	SNP	G	A	A	rs142931023	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:75979994G>A	uc002baw.2	-	3	3505	c.3412C>T	c.(3412-3414)CCT>TCT	p.P1138S		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1138	Interaction with COL5A1 (By similarity).|Extracellular (Potential).|Gly/Ser-rich (glycosaminoglycan attachment domain).|CSPG 7.				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						CCTCCTTGAGGGACCACAAGG	0.662000													24	54					0	0	0.00106085	0	0
EFTUD1	79631	broad.mit.edu	37	15	82517553	82517553	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:82517553G>A	uc002bgt.1	-	12	1414	c.1245C>T	c.(1243-1245)TCC>TCT	p.S415S	EFTUD1_uc002bgu.1_Silent_p.S364S	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	415					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						CAAACATTTTGGAAACAAATA	0.378000													5	56					0	0	0.00307968	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84488747	84488747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:84488747G>A	uc002bjz.3	+	6	772	c.548G>A	c.(547-549)GGA>GAA	p.G183E	ADAMTSL3_uc002bjy.1_Missense_Mutation_p.G183E|ADAMTSL3_uc010bmt.1_Missense_Mutation_p.G183E|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.G183E	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	183						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			GTACTGGATGGAACTCGTTGC	0.532000													18	25					0	0	0.00074312	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053127	85053127	+	RNA	SNP	T	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:85053127T>A	uc002bkm.2	-	9		c.1920A>T			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						ATGTTTTGTTTTTTTTTTTTC	0.338000													4	22					0	0	0.000602214	0	0
C15orf32	145858	broad.mit.edu	37	15	93043589	93043589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr15:93043589G>A	uc002brc.1	+	3	968	c.496G>A	c.(496-498)GAA>AAA	p.E166K	C15orf32_uc010bod.1_RNA	NM_153040	NP_694585	Q32M92	CO032_HUMAN	hypothetical protein LOC145858	166										ovary(1)	1	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0493)|OV - Ovarian serous cystadenocarcinoma(32;0.125)			CCTTTTTAGGGAACATTTAAT	0.473000													40	56					0	0	0.00285205	0	0
IFT140	9742	broad.mit.edu	37	16	1634239	1634239	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:1634239G>A	uc002cmb.2	-	11	1700	c.1338C>T	c.(1336-1338)ATC>ATT	p.I446I	IFT140_uc002clz.2_Silent_p.I97I	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	446										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				ACACTCCACTGATGTGCATGT	0.627000													19	11					0	0	0.00152264	0	0
TSC2	7249	broad.mit.edu	37	16	2138456	2138456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:2138456G>A	uc002con.2	+	42	5375	c.5269G>A	c.(5269-5271)GAA>AAA	p.E1757K	TSC2_uc010bsd.2_Missense_Mutation_p.E1734K|TSC2_uc002coo.2_Missense_Mutation_p.E1690K|TSC2_uc010uvv.1_Missense_Mutation_p.E1654K|TSC2_uc010uvw.1_Missense_Mutation_p.E1642K|TSC2_uc002cop.2_Missense_Mutation_p.E1513K|TSC2_uc002coq.2_Missense_Mutation_p.E532K|TSC2_uc002cor.2_Missense_Mutation_p.E458K	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	1757	Rap-GAP.				cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				GATCTGCGAGGAAGCCGCCTA	0.647000			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				20	60					0	0	0.00395357	0	0
C16orf79	283870	broad.mit.edu	37	16	2259370	2259370	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:2259370G>T	uc010bsh.2	-	5	953	c.776C>A	c.(775-777)CCA>CAA	p.P259Q	MLST8_uc002coz.2_3'UTR|MLST8_uc002cpa.2_3'UTR|MLST8_uc002cpb.2_3'UTR|MLST8_uc010uvx.1_3'UTR|MLST8_uc002cpc.2_3'UTR|MLST8_uc002cpd.2_3'UTR|MLST8_uc002cpe.2_3'UTR|MLST8_uc002cpg.2_3'UTR|MLST8_uc002cph.2_RNA|MLST8_uc002cpf.2_3'UTR|C16orf79_uc002cpi.1_Missense_Mutation_p.P227Q	NM_182563	NP_872369	Q6PL45	CP079_HUMAN	hypothetical protein LOC283870	259						integral to membrane				central_nervous_system(1)	1						GGCTCAGTCTGGGAGGTAATA	0.627000													28	22					2.80507e-11	7.72616e-11	0.0024448	1	0
TRAP1	10131	broad.mit.edu	37	16	3714414	3714414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:3714414G>A	uc002cvt.3	-	13	1519	c.1430C>T	c.(1429-1431)TCC>TTC	p.S477F	TRAP1_uc002cvs.2_Missense_Mutation_p.S268F|TRAP1_uc010uxf.1_Missense_Mutation_p.S424F|uc002cvu.2_RNA	NM_016292	NP_057376	Q12931	TRAP1_HUMAN	TNF receptor-associated protein 1 precursor	477					cellular response to oxidative stress|protein folding	mitochondrion	ATP binding|tumor necrosis factor receptor binding|unfolded protein binding			central_nervous_system(1)	1		Ovarian(90;0.0261)				TAGCTGCCCGGAGGGCAGCGC	0.632000													7	16					0	0	0.00307968	0	0
ADCY9	115	broad.mit.edu	37	16	4027616	4027616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:4027616C>T	uc002cvx.2	-	9	3234	c.2695G>A	c.(2695-2697)GGC>AGC	p.G899S		NM_001116	NP_001107	O60503	ADCY9_HUMAN	adenylate cyclase 9	899	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6						GCGGCCGAGCCTGTGAACACT	0.652000													8	28					0	0	0.000274275	0	0
A2BP1	54715	broad.mit.edu	37	16	7657328	7657328	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:7657328G>A	uc002cys.2	+	10	1652	c.664G>A	c.(664-666)GAA>AAA	p.E222K	A2BP1_uc010buf.1_Missense_Mutation_p.E222K|A2BP1_uc002cyr.1_Missense_Mutation_p.E221K|A2BP1_uc002cyt.2_Missense_Mutation_p.E222K|A2BP1_uc010uxz.1_Missense_Mutation_p.E265K|A2BP1_uc010uya.1_Missense_Mutation_p.E179K|A2BP1_uc002cyv.1_Missense_Mutation_p.E222K|A2BP1_uc010uyb.1_Missense_Mutation_p.E222K|A2BP1_uc002cyw.2_Missense_Mutation_p.E242K|A2BP1_uc002cyy.2_Missense_Mutation_p.E242K|A2BP1_uc002cyx.2_Missense_Mutation_p.E242K|A2BP1_uc010uyc.1_Missense_Mutation_p.E242K	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	222					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CTACAGTCCCGAATTCTATGC	0.353000													69	50					0	0	0.00361006	0	0
CIITA	4261	broad.mit.edu	37	16	10996615	10996615	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:10996615C>T	uc002dai.3	+	8	862	c.729C>T	c.(727-729)ATC>ATT	p.I243I	CIITA_uc002daj.3_Silent_p.I244I|CIITA_uc002dak.3_Silent_p.I194I|CIITA_uc002dag.2_Silent_p.I243I|CIITA_uc002dah.2_Silent_p.I195I|CIITA_uc010bup.1_Silent_p.I243I	NM_000246	NP_000237	P33076	C2TA_HUMAN	class II transactivator	243					interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|response to antibiotic|transcription, DNA-dependent	nucleus	activating transcription factor binding|ATP binding|protein C-terminus binding|protein complex binding|transcription coactivator activity|transcription regulatory region DNA binding			central_nervous_system(1)	1						TCTGGCAAATCTCTGAGGCTG	0.587000			T	FLJ27352|CD274|CD273|RALGDS|RUNDC2A|C16orf75	PMBL|Hodgkin Lymphona|								30	36					0	0	0.001512	0	0
CDR2	1039	broad.mit.edu	37	16	22385600	22385600	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:22385600C>A	uc002dkn.2	-	1	339	c.31G>T	c.(31-33)GAG>TAG	p.E11*		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	11						nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		TCCTTCATCTCAAACTCCTCT	0.507000													38	46					1.02591e-13	2.83118e-13	0.0025221	1	0
SETD1A	9739	broad.mit.edu	37	16	30976141	30976141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:30976141C>T	uc002ead.1	+	7	1764	c.1078C>T	c.(1078-1080)CGT>TGT	p.R360C		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	360	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						ctcTCAGTTTCGTAGTTCTGA	0.388000													68	98					0	0	0.00361006	0	0
C16orf78	123970	broad.mit.edu	37	16	49430385	49430385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:49430385C>T	uc002efr.2	+	4	489	c.446C>T	c.(445-447)CCA>CTA	p.P149L		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	149										central_nervous_system(1)	1						CGGCCAAACCCATTCCGTCGA	0.498000													31	35					0	0	0.00327116	0	0
NOD2	64127	broad.mit.edu	37	16	50744939	50744939	+	Missense_Mutation	SNP	C	T	T	rs145293873		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:50744939C>T	uc002egm.1	+	4	1222	c.1117C>T	c.(1117-1119)CGT>TGT	p.R373C	NOD2_uc010cbk.1_Missense_Mutation_p.R346C|NOD2_uc002egl.1_Missense_Mutation_p.R151C|NOD2_uc010cbl.1_Missense_Mutation_p.R151C|NOD2_uc010cbm.1_Missense_Mutation_p.R151C|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	373	NACHT.		R -> C (associated with Crohn disease).		activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				CCACCCTGACCGTGTCCTGTT	0.542000													22	33					0	0	0.00332997	0	0
SALL1	6299	broad.mit.edu	37	16	51173572	51173572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:51173572G>A	uc010vgs.1	-	2	2592	c.2561C>T	c.(2560-2562)TCG>TTG	p.S854L	SALL1_uc010vgr.1_Missense_Mutation_p.S757L|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	854					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGGCAAAGGCGAAGAGGATAA	0.517000													50	47					0	0	0.00361006	0	0
CHD9	80205	broad.mit.edu	37	16	53340242	53340242	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:53340242A>G	uc002ehb.2	+	31	6877	c.6713A>G	c.(6712-6714)AAT>AGT	p.N2238S	CHD9_uc002egy.2_Missense_Mutation_p.N2238S|CHD9_uc002ehc.2_Missense_Mutation_p.N2239S|CHD9_uc002ehf.2_Missense_Mutation_p.N1352S|CHD9_uc010cbw.2_Missense_Mutation_p.N304S|CHD9_uc002ehg.1_Missense_Mutation_p.N245S	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2238					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				CAGATGAACAATGGGACACCA	0.423000													21	29					0	0	0.00278032	0	0
KCTD19	146212	broad.mit.edu	37	16	67333465	67333465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:67333465G>A	uc002esu.2	-	6	838	c.787C>T	c.(787-789)CCG>TCG	p.P263S	KCTD19_uc002est.2_Missense_Mutation_p.P35S|KCTD19_uc010vjj.1_Missense_Mutation_p.P6S	NM_001100915	NP_001094385	Q17RG1	KCD19_HUMAN	potassium channel tetramerisation domain	263						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0311)|Epithelial(162;0.0906)		CAGGTGGTCGGGGAACAGCCA	0.632000													35	36					0	0	0.00327116	0	0
ATP6V0D1	9114	broad.mit.edu	37	16	67478594	67478594	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:67478594G>A	uc002ete.1	-	3	418	c.318C>T	c.(316-318)ATC>ATT	p.I106I	ATP6V0D1_uc010vjo.1_Silent_p.I147I|ATP6V0D1_uc010vjn.1_Silent_p.I29I	NM_004691	NP_004682	P61421	VA0D1_HUMAN	ATPase, H+ transporting, lysosomal, V0 subunit	106					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex					0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0439)|Epithelial(162;0.101)		TCACGTTGTCGATCATGTAAC	0.612000													5	8					0	0	0.000602214	0	0
ACD	65057	broad.mit.edu	37	16	67694229	67694229	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:67694229G>A	uc002etq.3	-	1	490	c.153C>T	c.(151-153)CTC>CTT	p.L51L	ACD_uc002etp.3_Silent_p.L51L|ACD_uc002etr.3_Silent_p.L51L|ACD_uc010vjt.1_Silent_p.L41L|PARD6A_uc002ets.2_5'Flank|PARD6A_uc002ett.2_5'Flank|PARD6A_uc002etu.2_5'Flank	NM_001082486	NP_001075955	Q96AP0	ACD_HUMAN	adrenocortical dysplasia homolog isoform 1	51					intracellular protein transport|negative regulation of telomere maintenance via telomerase|positive regulation of single-stranded telomeric DNA binding|positive regulation of telomerase activity|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|telomere assembly	nuclear telomere cap complex|nucleoplasm	DNA binding|DNA polymerase binding			pancreas(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		GGGGCCGGAGGAGGAGGCCCC	0.751000													6	2					0	0	0.00116845	0	0
AARS	16	broad.mit.edu	37	16	70302194	70302194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:70302194C>T	uc002eyn.1	-	8	1161	c.1051G>A	c.(1051-1053)GAT>AAT	p.D351N	AARS_uc010vlu.1_Missense_Mutation_p.D181N	NM_001605	NP_001596	P49588	SYAC_HUMAN	alanyl-tRNA synthetase	351					alanyl-tRNA aminoacylation|tRNA processing	cytosol|soluble fraction	alanine-tRNA ligase activity|ATP binding|metal ion binding|tRNA binding			pancreas(1)	1		Ovarian(137;0.0365)		BRCA - Breast invasive adenocarcinoma(221;0.161)	L-Alanine(DB00160)	ACGACAACATCCACTAACGTA	0.502000													19	19					0	0	0.000958276	0	0
HYDIN	54768	broad.mit.edu	37	16	70917856	70917856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:70917856G>A	uc002ezr.2	-	59	10071	c.9943C>T	c.(9943-9945)CTT>TTT	p.L3315F		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3316										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AAAGTGTAAAGAATGCCGGCA	0.468000													22	33					0	0	0.00106085	0	0
HYDIN	54768	broad.mit.edu	37	16	70972627	70972627	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:70972627C>T	uc002ezr.2	-	44	7010	c.6882G>A	c.(6880-6882)GAG>GAA	p.E2294E		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2295	Potential.									ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GACGCTCCTTCTCTTTCTCAA	0.542000													16	18					0	0	0.00074312	0	0
ZNF23	7571	broad.mit.edu	37	16	71482512	71482512	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:71482512C>T	uc002faf.2	-	6	2230	c.1416G>A	c.(1414-1416)GGG>GGA	p.G472G	ZNF23_uc002fad.2_Silent_p.G414G|ZNF23_uc002fae.2_Silent_p.G414G|ZNF23_uc010vmf.1_Silent_p.G414G|ZNF23_uc002fag.2_Silent_p.G414G|ZNF23_uc002fah.2_Silent_p.G472G|ZNF23_uc002fai.2_Silent_p.G511G	NM_145911	NP_666016	P17027	ZNF23_HUMAN	zinc finger protein 23	472					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(137;0.00768)		BRCA - Breast invasive adenocarcinoma(221;0.0686)		AAGGTTTCTCCCCAGTGTGAA	0.428000													14	29					0	0	0.00316338	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184692	72184692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:72184692C>T	uc002fcc.3	-	5	623	c.451G>A	c.(451-453)GAG>AAG	p.E151K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E151K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.E6K	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	151										ovary(2)	2		Ovarian(137;0.179)				CCTGTGTTCTCGTTGTGATTT	0.502000													35	53					0	0	0.00222228	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76389314	76389314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:76389314G>A	uc002feu.1	+	5	681	c.296G>A	c.(295-297)GGA>GAA	p.G99E	CNTNAP4_uc002fev.1_Missense_Mutation_p.G11E|CNTNAP4_uc010chb.1_Missense_Mutation_p.G74E|CNTNAP4_uc002fex.1_Missense_Mutation_p.G102E|CNTNAP4_uc002few.2_Missense_Mutation_p.G74E	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	99	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						ACTCAAGGGGGATATGGTAGC	0.522000													33	36					0	0	0.00375469	0	0
PLCG2	5336	broad.mit.edu	37	16	81962173	81962173	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:81962173A>C	uc002fgt.2	+	24	2677	c.2525A>C	c.(2524-2526)GAC>GCC	p.D842A		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	842					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						ATTATTGAAGACAATCCCTTA	0.418000													31	59					0	0	0.000953801	0	0
MBTPS1	8720	broad.mit.edu	37	16	84100115	84100115	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:84100115A>G	uc002fhi.2	-	17	2834	c.2332T>C	c.(2332-2334)TTC>CTC	p.F778L	MBTPS1_uc002fhh.2_Missense_Mutation_p.F282L	NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	778	Lumenal (Potential).				cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						GCCAGGGTGAACTCCCCTTCA	0.537000													13	16					0	0	0.00400662	0	0
KCNG4	93107	broad.mit.edu	37	16	84256351	84256351	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:84256351G>A	uc010voc.1	-	3	1153	c.1032C>T	c.(1030-1032)ATC>ATT	p.I344I		NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	344	Helical; Voltage-sensor; Name=Segment S4; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						TCACGTAGAGGATGCGCAGCG	0.692000													4	8					0	0	0.00024832	0	0
ACSF3	197322	broad.mit.edu	37	16	89167527	89167527	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:89167527C>T	uc002fmp.2	+	3	778	c.438C>T	c.(436-438)GTC>GTT	p.V146V	ACSF3_uc010cig.1_Silent_p.V146V|ACSF3_uc010cih.1_Intron|ACSF3_uc002fmq.1_RNA|ACSF3_uc010cii.1_RNA|ACSF3_uc002fmr.1_5'Flank	NM_174917	NP_777577	Q4G176	ACSF3_HUMAN	acyl-CoA synthetase family member 3 precursor	146					fatty acid metabolic process	mitochondrion	acid-thiol ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0281)		GCTCTGTGGTCCTTGCCAGCC	0.642000													30	19					0	0	0.00127121	0	0
PIK3R5	23533	broad.mit.edu	37	17	8792491	8792491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:8792491C>T	uc002glt.2	-	9	927	c.860G>A	c.(859-861)AGG>AAG	p.R287K	PIK3R5_uc010vuz.1_Missense_Mutation_p.R287K|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Missense_Mutation_p.G236S|PIK3R5_uc010cob.1_5'UTR	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	287				AKTLAELEDIFTETAEAQELASGIGDAAEARRWLRTKLQAV GEKAGFPGVLDTAKPGKLHTIPIPVARCYTYSWSQDS -> TLQNQGSSIPSPSLSPGATPTAGARTALTSCRKSCSRNRSC SSQGSWEMMKRRKRRRRRWRRTWKLMGTVPREIPCSP (in Ref. 6; AAW63122).	platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						GGTGTAGCACCTGGCGACAGG	0.517000													22	11					0	0	0.00209593	0	0
DHRS7C	201140	broad.mit.edu	37	17	9680538	9680538	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:9680538C>T	uc010vvb.1	-	4	546	c.546G>A	c.(544-546)GGG>GGA	p.G182G	DHRS7C_uc010cof.2_Silent_p.G181G	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	182						extracellular region	binding|oxidoreductase activity				0						TTCCAAACTTCCCTTGGATAT	0.413000													19	17					0	0	0.00229938	0	0
MYH13	8735	broad.mit.edu	37	17	10224953	10224953	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:10224953G>A	uc002gmk.1	-	24	3097	c.3007C>T	c.(3007-3009)CTA>TTA	p.L1003L	MYH13_uc010vve.1_Silent_p.L101L	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1003	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCCTCCTGTAGAGATTTCTTT	0.368000													47	39					0	0	0.00285205	0	0
MYH8	4626	broad.mit.edu	37	17	10312618	10312618	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:10312618G>A	uc002gmm.2	-	16	1970	c.1875C>T	c.(1873-1875)TCC>TCT	p.S625S	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	625	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TAGCATACGTGGAAAAGAGAC	0.408000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				28	45					0	0	0.00428921	0	0
MYH1	4619	broad.mit.edu	37	17	10400471	10400471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:10400471C>T	uc002gmo.2	-	33	4665	c.4571G>A	c.(4570-4572)GGA>GAA	p.G1524E	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1524	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GATGCGCTTTCCTCCTTCTGC	0.368000													24	43					0	0	0.00278032	0	0
MYH2	4620	broad.mit.edu	37	17	10431131	10431131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:10431131C>T	uc010coi.2	-	28	3933	c.3805G>A	c.(3805-3807)GAA>AAA	p.E1269K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1269K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1269	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TGCTCCTCTTCCTTTGATTTC	0.488000													45	54					0	0	0.00361006	0	0
RICH2	9912	broad.mit.edu	37	17	12819252	12819252	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:12819252A>G	uc002gnr.3	+	5	638	c.311A>G	c.(310-312)AAG>AGG	p.K104R	RICH2_uc010vvk.1_Missense_Mutation_p.K104R|RICH2_uc010vvl.1_Missense_Mutation_p.K104R|RICH2_uc002gns.3_5'UTR|RICH2_uc010vvm.1_Missense_Mutation_p.K104R|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	104	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						ACGGAGGACAAGCTGGCTCAG	0.493000													13	14					0	0	0.00185496	0	0
CDRT15P	94158	broad.mit.edu	37	17	13927880	13927880	+	RNA	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:13927880G>A	uc002god.1	+	1		c.66G>A				NR_003261				Homo sapiens CMT1A duplicated region transcript 15 pseudogene (CDRT15P), non-coding RNA.												0						TTCAGGAACGGAGGGAGTGAG	0.557000													18	25					0	0	0.00152264	0	0
HS3ST3B1	9953	broad.mit.edu	37	17	14248469	14248469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:14248469G>A	uc002goh.1	+	2	1009	c.679G>A	c.(679-681)GTG>ATG	p.V227M		NM_006041	NP_006032	Q9Y662	HS3SB_HUMAN	heparan sulfate D-glucosaminyl	227	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Golgi membrane|integral to plasma membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity				0				UCEC - Uterine corpus endometrioid carcinoma (92;0.0887)		CATCGTGGTGGTGCGGGACCC	0.627000													13	8					0	0	0.00121646	0	0
NCOR1	9611	broad.mit.edu	37	17	15960834	15960834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:15960834C>T	uc002gpo.2	-	40	6626	c.6386G>A	c.(6385-6387)AGG>AAG	p.R2129K	NCOR1_uc002gpn.2_Missense_Mutation_p.R2026K|NCOR1_uc002gpl.2_Missense_Mutation_p.R144K|NCOR1_uc002gpm.2_Missense_Mutation_p.R649K|NCOR1_uc010vwb.1_Missense_Mutation_p.R713K|NCOR1_uc010coy.2_Missense_Mutation_p.R1037K|NCOR1_uc010vwc.1_Missense_Mutation_p.R939K	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	2129	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		ATACCTTCCCCTGGATTTGTC	0.378000													54	69					0	0	0.00361006	0	0
DHRS7B	25979	broad.mit.edu	37	17	21081617	21081617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:21081617G>A	uc002gyo.2	+	3	298	c.271G>A	c.(271-273)GAG>AAG	p.E91K		NM_015510	NP_056325	Q6IAN0	DRS7B_HUMAN	dehydrogenase/reductase (SDR family) member 7B	91	Peroxisomal (Potential).					integral to membrane|peroxisomal membrane	binding|oxidoreductase activity			pancreas(1)	1						GGCCCTAGAAGAGCTCATCAG	0.557000													29	36					0	0	0.00283554	0	0
SEZ6	124925	broad.mit.edu	37	17	27309029	27309030	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:27309029_27309030CC>TT	uc002hdp.2	-	2	277_278	c.83_84GG>AA	c.(82-84)GGG>GAA	p.G28E	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.G28E|SEZ6_uc002hdq.1_5'UTR|SEZ6_uc010crz.1_Missense_Mutation_p.G28E	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	28	Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			CTTGTCCTTTCCCCACGGTTGG	0.584000													10	13					0	0	6.4e-05	0	0
SLFN5	162394	broad.mit.edu	37	17	33592123	33592123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:33592123C>T	uc002hjf.3	+	5	2009	c.1892C>T	c.(1891-1893)ACC>ATC	p.T631I	SLFN5_uc010wcg.1_3'UTR	NM_144975	NP_659412	Q08AF3	SLFN5_HUMAN	schlafen family member 5	631					cell differentiation		ATP binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0191)		CAGCCAGTGACCCGGAAAACC	0.418000													26	43					0	0	0.000720815	0	0
KRT31	3881	broad.mit.edu	37	17	39550277	39550277	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:39550277G>A	uc002hwn.2	-	7	1295	c.1242C>T	c.(1240-1242)TTC>TTT	p.F414F	KRT31_uc010cxn.2_3'UTR	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	414	Tail.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				TCTAGCGCACGAAGGAATTGC	0.612000													26	22					0	0	0.00395357	0	0
RUNDC1	146923	broad.mit.edu	37	17	41141416	41141416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:41141416C>T	uc002ici.1	+	3	728	c.716C>T	c.(715-717)TCC>TTC	p.S239F	RUNDC1_uc010whi.1_Missense_Mutation_p.S9F	NM_173079	NP_775102	Q96C34	RUND1_HUMAN	RUN domain containing 1	239											0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		GACATCAGTTCCCTGTCCACT	0.448000													17	25					0	0	0.00074312	0	0
FZD2	2535	broad.mit.edu	37	17	42636370	42636370	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:42636370C>T	uc002igx.1	+	1	1446	c.1314C>T	c.(1312-1314)CTC>CTT	p.L438L		NM_001466	NP_001457	Q14332	FZD2_HUMAN	frizzled 2 precursor	438	Cytoplasmic (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|positive regulation of cGMP metabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		TCGTGTCGCTCTTCCGCATCC	0.632000													35	43					0	0	0.00111076	0	0
ABCC3	8714	broad.mit.edu	37	17	48735850	48735850	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:48735850T>C	uc002isl.2	+	6	747	c.667T>C	c.(667-669)TTC>CTC	p.F223L	ABCC3_uc002isk.3_Missense_Mutation_p.F223L	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	223	Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	TTTCTGGTGGTTCACAAAGTG	0.592000													38	47					0	0	0.00195071	0	0
BCAS3	54828	broad.mit.edu	37	17	59152286	59152286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:59152286C>T	uc002iyv.3	+	21	2189	c.2080C>T	c.(2080-2082)CCC>TCC	p.P694S	BCAS3_uc002iyu.3_Missense_Mutation_p.P679S|BCAS3_uc002iyw.3_Missense_Mutation_p.P675S|BCAS3_uc002iyy.3_Missense_Mutation_p.P450S|BCAS3_uc002iyz.3_Missense_Mutation_p.P248S|BCAS3_uc002iza.3_Missense_Mutation_p.P233S	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	694						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			TATAGTGGTTCCCCCTGGAAG	0.428000													38	58					0	0	0.000953801	0	0
SCN4A	6329	broad.mit.edu	37	17	62024439	62024439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:62024439G>A	uc002jds.1	-	18	3484	c.3407C>T	c.(3406-3408)CCC>CTC	p.P1136L		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1136	III.|Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TGCCCTCAGGGGACGCAGGGC	0.672000											OREG0024655	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	19					0	0	0.00198382	0	0
UBE2O	63893	broad.mit.edu	37	17	74392229	74392229	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:74392229G>A	uc002jrm.3	-	14	2854	c.2789C>T	c.(2788-2790)TCC>TTC	p.S930F	UBE2O_uc002jrn.3_Missense_Mutation_p.S930F|UBE2O_uc002jrl.3_Missense_Mutation_p.S534F	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	930							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						CTCCAGTACGGAGAAGACCTC	0.642000													13	16					0	0	0.00316338	0	0
BAIAP2	10458	broad.mit.edu	37	17	79077423	79077424	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:79077423_79077424CC>TT	uc002jzg.2	+	8	872_873	c.764_765CC>TT	c.(763-765)CCC>CTT	p.P255L	BAIAP2_uc002jyz.3_Missense_Mutation_p.P255L|BAIAP2_uc002jza.2_Missense_Mutation_p.P255L|BAIAP2_uc002jzc.2_Missense_Mutation_p.P255L|BAIAP2_uc002jzb.2_Missense_Mutation_p.P12L|BAIAP2_uc002jzd.2_Missense_Mutation_p.P255L|BAIAP2_uc002jzf.2_Missense_Mutation_p.P255L|BAIAP2_uc002jze.2_Missense_Mutation_p.P288L|BAIAP2_uc010wuh.1_Missense_Mutation_p.P177L|BAIAP2_uc002jzh.2_Missense_Mutation_p.P256L|BAIAP2_uc010wui.1_Missense_Mutation_p.P118L	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	255					axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GCCACCCTCCCCAGCGCCCTGT	0.708000													6	18					0	0	6.4e-05	0	0
CCDC57	284001	broad.mit.edu	37	17	80159682	80159682	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:80159682G>A	uc002kdz.1	-	3	494	c.139C>T	c.(139-141)CAG>TAG	p.Q47*	CCDC57_uc002kdx.1_Nonsense_Mutation_p.Q47*	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	47	Potential.									ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			AGTTTCCCCTGCGCCTCCTCC	0.667000													26	35					0	0	0.00178596	0	0
FOXK2	3607	broad.mit.edu	37	17	80540626	80540626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr17:80540626C>T	uc002kfn.2	+	5	1090	c.919C>T	c.(919-921)CGC>TGC	p.R307C	FOXK2_uc002kfm.1_Missense_Mutation_p.R307C|FOXK2_uc010diu.2_Intron	NM_004514	NP_004505	Q01167	FOXK2_HUMAN	forkhead box K2	307	DNA-binding; major groove.|Fork-head.			R->A: Abolishes DNA-binding.	embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0	Breast(20;0.00106)|all_neural(118;0.0952)		OV - Ovarian serous cystadenocarcinoma(97;0.0371)|BRCA - Breast invasive adenocarcinoma(99;0.0415)			GAATTCAATTCGCCACAATCT	0.388000													14	22					0	0	0.00244969	0	0
EPB41L3	23136	broad.mit.edu	37	18	5395630	5395630	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr18:5395630G>C	uc002kmt.1	-	20	3136	c.3050C>G	c.(3049-3051)ACC>AGC	p.T1017S	EPB41L3_uc010wzh.1_Missense_Mutation_p.T848S|EPB41L3_uc002kmu.1_Missense_Mutation_p.T795S|EPB41L3_uc010dkq.1_Missense_Mutation_p.T686S|EPB41L3_uc002kms.1_Missense_Mutation_p.T252S|EPB41L3_uc010wze.1_Missense_Mutation_p.T322S|EPB41L3_uc010wzf.1_Missense_Mutation_p.T314S|EPB41L3_uc010wzg.1_Missense_Mutation_p.T289S|EPB41L3_uc010dkr.2_Missense_Mutation_p.T409S	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	1017	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CGTAGTGGTGGTGGTACTGGT	0.537000													78	11					0	0	0.00361006	0	0
RNF165	494470	broad.mit.edu	37	18	44030303	44030303	+	Silent	SNP	C	T	T	rs146872731		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr18:44030303C>T	uc002lcb.1	+	5	711	c.660C>T	c.(658-660)TTC>TTT	p.F220F	RNF165_uc002lby.1_Silent_p.F153F|RNF165_uc010dnn.1_Silent_p.F16F	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165	220							zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		AGCTTCACTTCCTTGCTCTCC	0.517000													27	1					0	0	0.001512	0	0
DCC	1630	broad.mit.edu	37	18	50994285	50994285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr18:50994285G>A	uc002lfe.1	+	25	4228	c.3641G>A	c.(3640-3642)GGG>GAG	p.G1214E	DCC_uc010dpf.1_Missense_Mutation_p.G849E	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1214	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GAGGAAGCAGGGAGCTCTATG	0.522000													29	7					0	0	0.0024448	0	0
SERPINB13	5275	broad.mit.edu	37	18	61264526	61264526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr18:61264526C>T	uc002ljc.2	+	8	1273	c.1105C>T	c.(1105-1107)CCC>TCC	p.P369S	SERPINB13_uc002ljd.2_Missense_Mutation_p.P233S|SERPINB13_uc010xep.1_Missense_Mutation_p.P378S|SERPINB13_uc010xeq.1_Missense_Mutation_p.P190S|SERPINB13_uc010xer.1_Missense_Mutation_p.P190S	NM_012397	NP_036529	Q9UIV8	SPB13_HUMAN	serine (or cysteine) proteinase inhibitor, clade	369					regulation of proteolysis|response to UV	cytoplasm|extracellular region	serine-type endopeptidase inhibitor activity			ovary(1)	1						CTGCAATCATCCCTTCCTGTT	0.498000													41	4					0	0	0.00321405	0	0
ALKBH7	84266	broad.mit.edu	37	19	6374888	6374888	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:6374888C>T	uc002meo.1	+	4	958	c.570C>T	c.(568-570)CGC>CGT	p.R190R		NM_032306	NP_115682	Q9BT30	ALKB7_HUMAN	spermatogenesis associated 11 precursor	190						extracellular region|nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						TTGGGGAACGCCGGATTCCCC	0.647000													24	23					0	0	0.00395357	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8665929	8665929	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:8665929C>T	uc002mkj.1	-	6	967	c.693G>A	c.(691-693)CTG>CTA	p.L231L	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	231					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						CCGATCGCTTCAGGCCTGGCT	0.637000													33	31					0	0	0.00428921	0	0
MUC16	94025	broad.mit.edu	37	19	9026203	9026203	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:9026203G>A	uc002mkp.2	-	14	36987	c.36783C>T	c.(36781-36783)GTC>GTT	p.V12261V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12263	SEA 2.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACCCTGCAGGACACTCTCCA	0.542000													64	84					0	0	0.00361006	0	0
CYP4F8	11283	broad.mit.edu	37	19	15730447	15730447	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:15730447G>A	uc002nbi.2	+	5	463	c.399G>A	c.(397-399)GGG>GGA	p.G133G	CYP4F8_uc010xoi.1_3'UTR|CYP4F8_uc010xoj.1_Intron	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	133					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						CCGTACTAGGGGATGGGCTCT	0.532000													15	11					0	0	0.00244969	0	0
GLT25D1	79709	broad.mit.edu	37	19	17692028	17692028	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:17692028C>T	uc002nhc.1	+	12	1656	c.1644C>T	c.(1642-1644)GCC>GCT	p.A548A	GLT25D1_uc010eay.1_Silent_p.A77A	NM_024656	NP_078932	Q8NBJ5	GT251_HUMAN	glycosyltransferase 25 domain containing 1	548					lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen	procollagen galactosyltransferase activity				0						ACCTGCATGCCTTCTCTGTGG	0.602000													94	93					0	0	0.00361006	0	0
ZNF93	81931	broad.mit.edu	37	19	20044200	20044200	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:20044200C>T	uc002non.2	+	4	547	c.436C>T	c.(436-438)CAA>TAA	p.Q146*		NM_031218	NP_112495	P35789	ZNF93_HUMAN	zinc finger protein 93	146	C2H2-type 1; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)	1						CAAAGTATTTCAATGTGATAA	0.318000													23	12					0	0	0.00229938	0	0
MAG	4099	broad.mit.edu	37	19	35801484	35801484	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:35801484C>T	uc002nyy.1	+	9	1703	c.1554C>T	c.(1552-1554)GGC>GGT	p.G518G	MAG_uc002nyx.1_Silent_p.G518G|MAG_uc010eds.1_Silent_p.G493G|MAG_uc002nyz.1_Silent_p.G518G	NM_002361	NP_002352	P20916	MAG_HUMAN	myelin associated glycoprotein isoform a	518	Helical; (Potential).				blood coagulation|cell adhesion|leukocyte migration|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane	sugar binding			breast(3)|lung(2)|central_nervous_system(1)|skin(1)	7	all_lung(56;2.37e-08)|Lung NSC(56;3.66e-08)|Esophageal squamous(110;0.162)	Renal(1328;0.242)	Epithelial(14;3.14e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.5e-18)|all cancers(14;1.5e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GGCCTGTGGGCGCCGTGGTCG	0.587000													21	21					0	0	0.000878237	0	0
MLL4	9757	broad.mit.edu	37	19	36217228	36217228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:36217228C>T	uc010eei.2	+	15	3977	c.3977C>T	c.(3976-3978)CCC>CTC	p.P1326L		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	1326					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCCTCTGCCCCAGGTGCACC	0.597000													22	35					0	0	0.000878237	0	0
ACTN4	81	broad.mit.edu	37	19	39215191	39215191	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:39215191C>T	uc002oja.1	+	16	2055	c.1996C>T	c.(1996-1998)CAG>TAG	p.Q666*	ACTN4_uc002ojb.1_5'Flank	NM_004924	NP_004915	O43707	ACTN4_HUMAN	actinin, alpha 4	666	Spectrin 4.				platelet activation|platelet degranulation|positive regulation of cellular component movement|positive regulation of sodium:hydrogen antiporter activity|protein transport|regulation of apoptosis	extracellular region|nucleolus|perinuclear region of cytoplasm|platelet alpha granule lumen|protein complex|pseudopodium|ribonucleoprotein complex	actin filament binding|calcium ion binding|integrin binding|nucleoside binding|protein homodimerization activity				0	all_cancers(60;1.57e-05)|Ovarian(47;0.103)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GCCCTGGATCCAGACCAAGAT	0.662000													23	38					0	0	0.00127121	0	0
FCGBP	8857	broad.mit.edu	37	19	40364063	40364063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:40364063C>T	uc002omp.3	-	31	14587	c.14579G>A	c.(14578-14580)GGG>GAG	p.G4860E		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4860	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GTGGATGCCCCCGTTGGCCAG	0.642000													20	16					0	0	0.00188189	0	0
FCGBP	8857	broad.mit.edu	37	19	40398010	40398010	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:40398010G>A	uc002omp.3	-	14	6965	c.6957C>T	c.(6955-6957)GCC>GCT	p.A2319A		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2319						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGGCCCCAGCGGCCTGACAGG	0.652000													20	86					0	0	0.00327116	0	0
ZNF780B	163131	broad.mit.edu	37	19	40540276	40540276	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:40540276G>A	uc002omu.2	-	5	2555	c.2490C>T	c.(2488-2490)TTC>TTT	p.F830F	ZNF780B_uc002omv.2_Silent_p.F682F	NM_001005851	NP_001005851	Q9Y6R6	Z780B_HUMAN	zinc finger protein 780B	830					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					ACCCAAGTATGAATTTTCTGA	0.378000													17	25					0	0	0.00074312	0	0
CYP2B6	1555	broad.mit.edu	37	19	41509972	41509972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:41509972G>A	uc002opr.1	+	2	245	c.238G>A	c.(238-240)GGA>AGA	p.G80R	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.G40R	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	80					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	CATGCTGTGTGGAGTAGAGGC	0.577000													31	46					0	0	0.00428921	0	0
CYP2F1	1572	broad.mit.edu	37	19	41627421	41627421	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:41627421C>T	uc002opu.1	+	5	599	c.543C>T	c.(541-543)TCC>TCT	p.S181S	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_Silent_p.S181S|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	181					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						TTATCTGTTCCGTGCTCTTCG	0.542000													77	86					0	0	0.00361006	0	0
CYP2F1	1572	broad.mit.edu	37	19	41630675	41630675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:41630675C>T	uc002opu.1	+	8	1072	c.1016C>T	c.(1015-1017)GCG>GTG	p.A339V	CYP2F1_uc010xvw.1_Intron|CYP2F1_uc010xvv.1_Missense_Mutation_p.R320C|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	339					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						CGGCTGCCGGCGCTGAAGGAC	0.677000													13	11					0	0	0.000566183	0	0
CEACAM5	1048	broad.mit.edu	37	19	42213851	42213851	+	Missense_Mutation	SNP	C	T	T	rs150911810	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:42213851C>T	uc002ork.2	+	2	438	c.317C>T	c.(316-318)TCC>TTC	p.S106F	CEACAM5_uc010ehz.1_Missense_Mutation_p.S106F|CEACAM5_uc002orj.1_Missense_Mutation_p.S106F|CEACAM5_uc002orl.2_Missense_Mutation_p.S106F	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	106	Ig-like 1.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		CCCAATGCATCCCTGCTGATC	0.468000													46	99					0	0	0.00361006	0	0
CEACAM6	4680	broad.mit.edu	37	19	42260760	42260760	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:42260760C>T	uc002orm.2	+	2	466	c.317C>T	c.(316-318)TCC>TTC	p.S106F		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	106	Ig-like V-type.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		CCCAATGCATCCCTGCTGATC	0.463000													18	262					0	0	0.00127121	0	0
CEACAM1	634	broad.mit.edu	37	19	43031300	43031300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:43031300G>A	uc002otv.2	-	2	430	c.317C>T	c.(316-318)TCC>TTC	p.S106F	uc010eif.1_Intron|uc010eig.1_Intron|uc010eih.1_Intron|CEACAM1_uc002otw.2_Missense_Mutation_p.S106F|CEACAM1_uc010eij.2_Missense_Mutation_p.S106F|CEACAM1_uc002otx.2_Missense_Mutation_p.S106F|CEACAM1_uc002oty.2_Missense_Mutation_p.S106F|CEACAM1_uc002otz.2_Missense_Mutation_p.S106F|CEACAM1_uc010eik.2_Missense_Mutation_p.S106F|CEACAM1_uc002oua.2_Missense_Mutation_p.S106F|CEACAM1_uc002oub.2_Missense_Mutation_p.S106F|CEACAM1_uc002ouc.2_Missense_Mutation_p.S106F	NM_001712	NP_001703	P13688	CEAM1_HUMAN	carcinoembryonic antigen-related cell adhesion	106	Ig-like V-type.|Extracellular (Potential).				angiogenesis|cell migration|homophilic cell adhesion|integrin-mediated signaling pathway	extracellular region|integral to plasma membrane|membrane fraction				ovary(1)|central_nervous_system(1)	2		Prostate(69;0.00682)		GBM - Glioblastoma multiforme(486;0.00148)	Arcitumomab(DB00113)	GATCAGCAGGGATGCATTGGG	0.478000													21	239					0	0	0.00278032	0	0
PSG11	5680	broad.mit.edu	37	19	43519492	43519492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:43519492G>A	uc002ovm.1	-	4	847	c.740C>T	c.(739-741)TCA>TTA	p.S247L	PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG11_uc002ovn.1_Missense_Mutation_p.S253L|PSG11_uc002ovo.1_Missense_Mutation_p.S125L|PSG11_uc002ovp.1_Missense_Mutation_p.S125L	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	247	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				AGAGGTGACTGAAGGGAAAAT	0.468000													52	69					0	0	0.00361006	0	0
ZNF155	7711	broad.mit.edu	37	19	44500877	44500877	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:44500877T>C	uc002oxy.1	+	5	1073	c.868T>C	c.(868-870)TGT>CGT	p.C290R	ZNF155_uc002oxz.1_Missense_Mutation_p.C290R|ZNF155_uc010xwt.1_Missense_Mutation_p.C301R	NM_003445	NP_003436	Q12901	ZN155_HUMAN	zinc finger protein 155	290	C2H2-type 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(1)|ovary(1)	2		Prostate(69;0.0352)				ACCATTCAAATGTGATATATG	0.393000													22	47					0	0	0.00188189	0	0
ZFP112	7771	broad.mit.edu	37	19	44833297	44833297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:44833297G>A	uc010ejj.2	-	5	1144	c.1031C>T	c.(1030-1032)TCC>TTC	p.S344F	ZFP112_uc002ozc.3_Missense_Mutation_p.S338F|ZFP112_uc010xwy.1_Missense_Mutation_p.S361F|ZFP112_uc010xwz.1_Missense_Mutation_p.S343F	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	344					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						GTTAAGAGGGGAACAGTGATT	0.383000													19	25					0	0	0.00152264	0	0
PRKD2	25865	broad.mit.edu	37	19	47197355	47197356	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:47197355_47197356GG>AA	uc002pfh.2	-	11	1694_1695	c.1352_1353CC>TT	c.(1351-1353)TCC>TTT	p.S451F	PRKD2_uc010ekt.2_5'Flank|PRKD2_uc002pfe.2_5'UTR|PRKD2_uc002pff.2_5'UTR|PRKD2_uc002pfg.2_Missense_Mutation_p.S294F|PRKD2_uc002pfi.2_Missense_Mutation_p.S451F|PRKD2_uc002pfj.2_Missense_Mutation_p.S451F|PRKD2_uc010xye.1_Missense_Mutation_p.S451F|PRKD2_uc002pfk.2_Missense_Mutation_p.S294F	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	451	PH.				cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		AGTTCTGGGCGGACTCCACCGT	0.584000													20	32					0	0	6.4e-05	0	0
FKRP	79147	broad.mit.edu	37	19	47260078	47260078	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:47260078C>T	uc002pfn.2	+	4	1668	c.1371C>T	c.(1369-1371)TTC>TTT	p.F457F	FKRP_uc002pfp.2_Silent_p.F457F	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	457						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		TTGCCGGCTTCGTGGCGCAGG	0.652000													4	7					0	0	0.00116845	0	0
AP2A1	160	broad.mit.edu	37	19	50303023	50303023	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:50303023C>T	uc002ppn.2	+	10	1483	c.1272C>T	c.(1270-1272)ATC>ATT	p.I424I	AP2A1_uc010enj.1_RNA|AP2A1_uc002ppo.2_Silent_p.I424I|AP2A1_uc002ppp.1_5'Flank	NM_014203	NP_055018	O95782	AP2A1_HUMAN	adaptor-related protein complex 2, alpha 1	424					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|Golgi to endosome transport|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|clathrin coat of trans-Golgi network vesicle|cytosol	protein binding|protein transporter activity			ovary(2)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.0023)|GBM - Glioblastoma multiforme(134;0.0157)		GCGAGGAGATCGTGAGTGCTG	0.333000													8	9					0	0	0.000442599	0	0
ATF5	22809	broad.mit.edu	37	19	50435745	50435745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:50435745C>T	uc010enq.1	+	4	812	c.245C>T	c.(244-246)CCC>CTC	p.P82L	IL4I1_uc002pqv.1_5'Flank|IL4I1_uc010eno.1_5'Flank|IL4I1_uc002pqw.1_5'Flank|IL4I1_uc002pqu.1_5'Flank|NUP62_uc002pqy.2_5'Flank|NUP62_uc002pqz.2_5'Flank|NUP62_uc002pra.2_5'Flank|NUP62_uc002prb.2_5'Flank|NUP62_uc002prc.2_5'Flank|ATF5_uc002prd.2_Missense_Mutation_p.P82L	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	82					regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		CTGGAGCCTCCCTTACCCCCC	0.572000													16	14					0	0	0.00400662	0	0
KLK11	11012	broad.mit.edu	37	19	51527553	51527553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:51527553G>A	uc002pvd.1	-	4	419	c.307C>T	c.(307-309)CAC>TAC	p.H103Y	KLK11_uc002pvb.1_Missense_Mutation_p.H96Y|KLK11_uc002pve.1_5'UTR|KLK11_uc002pvf.1_Missense_Mutation_p.H71Y|KLK11_uc002pvc.3_Missense_Mutation_p.H71Y|KLK11_uc010eom.2_Missense_Mutation_p.S72L	NM_144947	NP_659196	Q9UBX7	KLK11_HUMAN	kallikrein 11 isoform 2 precursor	103	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|GBM - Glioblastoma multiforme(134;0.00878)		TGCCCCAGGTGAACTATGTAG	0.592000													21	40					0	0	0.00188189	0	0
ZNF616	90317	broad.mit.edu	37	19	52619037	52619037	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:52619037G>A	uc002pym.2	-	4	1663	c.1380C>T	c.(1378-1380)ACC>ACT	p.T460T	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	460					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		CTTTCTCGCCGGTATGAATTC	0.388000													29	64					0	0	0.001512	0	0
ZNF616	90317	broad.mit.edu	37	19	52619486	52619486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:52619486G>A	uc002pym.2	-	4	1214	c.931C>T	c.(931-933)CAT>TAT	p.H311Y	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	311	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		AGTCTAAGATGGACACGCTGA	0.408000													23	49					0	0	0.00332997	0	0
ZNF83	55769	broad.mit.edu	37	19	53116288	53116288	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:53116288C>T	uc002pzu.3	-	2	2774	c.1530G>A	c.(1528-1530)AAG>AAA	p.K510K	ZNF83_uc002pzv.3_Silent_p.K510K|ZNF83_uc010eps.2_Silent_p.K482K|ZNF83_uc010ept.2_Silent_p.K510K|ZNF83_uc010epu.2_Silent_p.K510K|ZNF83_uc010epv.2_Silent_p.K510K|ZNF83_uc010epw.2_Silent_p.K510K|ZNF83_uc010epx.2_Silent_p.K482K|ZNF83_uc010epy.2_Silent_p.K510K|ZNF83_uc010epz.2_Silent_p.K482K	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	510						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TGTTAGATTTCTTTCCGGCAT	0.358000													22	24					0	0	0.00332997	0	0
ZNF600	162966	broad.mit.edu	37	19	53269306	53269306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:53269306G>A	uc002qab.3	-	3	1989	c.1703C>T	c.(1702-1704)TCC>TTC	p.S568F		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	568	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		GTGAACAAGGGATGGCTTGTG	0.438000													63	84					0	0	0.00361006	0	0
ZNF160	90338	broad.mit.edu	37	19	53572698	53572698	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:53572698A>T	uc010eqk.2	-	7	1505	c.1089T>A	c.(1087-1089)CAT>CAA	p.H363Q	ZNF160_uc002qaq.3_Missense_Mutation_p.H363Q|ZNF160_uc002qar.3_Missense_Mutation_p.H363Q	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	363	C2H2-type 4.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TTTCTCCAGTATGAATTAACT	0.388000													45	40					0	0	0.00222228	0	0
MIR520G	574484	broad.mit.edu	37	19	54225433	54225433	+	RNA	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:54225433C>T	hsa-mir-520g|MI0003166	+			c.14C>T																				0						CATGCTGTGACCCTCTAGAGG	0.408000													34	64					0	0	0.000953801	0	0
LILRB2	10288	broad.mit.edu	37	19	54779825	54779825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:54779825C>T	uc002qfb.2	-	13	1896	c.1630G>A	c.(1630-1632)GGG>AGG	p.G544R	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_3'UTR|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Missense_Mutation_p.G543R|LILRB2_uc010yet.1_Missense_Mutation_p.G428R	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	544	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATCTCCACCCCATCTTCAGGC	0.617000													69	67					0	0	0.00361006	0	0
LILRA4	23547	broad.mit.edu	37	19	54848870	54848870	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr19:54848870G>A	uc002qfj.2	-	5	810	c.753C>T	c.(751-753)ATC>ATT	p.I251I	LILRA4_uc002qfi.2_Silent_p.I185I	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	251	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GAGTGTATCTGATGTAGCCGA	0.662000													11	17					0	0	0.000978159	0	0
APOB	338	broad.mit.edu	37	2	21225528	21225528	+	Missense_Mutation	SNP	C	T	T	rs61743313	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:21225528C>T	uc002red.2	-	29	12894	c.12766G>A	c.(12766-12768)GAG>AAG	p.E4256K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4256					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCCTTAACTCGAAAGGAAGT	0.378000													261	311					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21231126	21231126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:21231126C>T	uc002red.2	-	26	8742	c.8614G>A	c.(8614-8616)GGA>AGA	p.G2872R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2872					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ACAATCACTCCATTACTAAGC	0.393000													318	320					0	0	0.00361006	0	0
CAPN13	92291	broad.mit.edu	37	2	30964797	30964797	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:30964797T>A	uc002rnn.2	-	14	1689	c.1513A>T	c.(1513-1515)ATT>TTT	p.I505F	CAPN13_uc002rnm.2_RNA|CAPN13_uc002rno.2_Missense_Mutation_p.I59F	NM_144575	NP_653176	Q6MZZ7	CAN13_HUMAN	calpain 13	505					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			large_intestine(1)|ovary(1)	2	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.155)					CTGTTGAAAATGCTTTGTTGG	0.527000													22	26					0	0	0.00395357	0	0
NRXN1	9378	broad.mit.edu	37	2	50280423	50280423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:50280423C>T	uc010fbp.2	-	4	1726	c.919G>A	c.(919-921)GAA>AAA	p.E307K	NRXN1_uc002rxb.3_Missense_Mutation_p.E1044K|NRXN1_uc010fbq.2_Missense_Mutation_p.E1412K|NRXN1_uc002rxe.3_Missense_Mutation_p.E1342K	NM_138735	NP_620072	P58400	NRX1B_HUMAN	neurexin 1 isoform beta precursor	307	Extracellular (Potential).				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CTAATGGGTTCTTTTGTCGGG	0.438000													39	73					0	0	0.00195071	0	0
PROM2	150696	broad.mit.edu	37	2	95947945	95947945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:95947945G>A	uc002suh.1	+	14	1832	c.1699G>A	c.(1699-1701)GAC>AAC	p.D567N	PROM2_uc002sui.2_Missense_Mutation_p.D567N|PROM2_uc002suj.2_Missense_Mutation_p.D221N|PROM2_uc002suk.2_Missense_Mutation_p.D567N|PROM2_uc002sul.2_Missense_Mutation_p.D93N|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	567	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						CGACTCCTACGACCTGGAGGA	0.592000													10	13					0	0	0.00136819	0	0
PLGLA	285189	broad.mit.edu	37	2	107007411	107007411	+	RNA	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:107007411G>A	uc002tdp.2	+	3		c.260G>A				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						ACAGAGGGACGATGTCCAAAA	0.448000													18	20					0	0	0.00278032	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125405373	125405373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:125405373G>A	uc002tno.2	+	13	2276	c.1912G>A	c.(1912-1914)GAG>AAG	p.E638K	CNTNAP5_uc010flu.2_Missense_Mutation_p.E639K	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	638	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		CAACAATACAGAGCTGACCCG	0.547000													13	9					0	0	0.00400662	0	0
LRP1B	53353	broad.mit.edu	37	2	141081612	141081612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:141081612C>T	uc002tvj.1	-	81	13336	c.12364G>A	c.(12364-12366)GAT>AAT	p.D4122N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4122	Extracellular (Potential).|LDL-receptor class B 36.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCAAAGATATCGATCCTATGT	0.303000										TSP Lung(27;0.18)			42	56					0	0	0.00361006	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711283	155711283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:155711283C>T	uc002tyv.1	+	3	1159	c.964C>T	c.(964-966)CTT>TTT	p.L322F	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	322	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	AGATGAAGTTCTTTGGGGTCA	0.383000													26	52					0	0	0.00209593	0	0
BAZ2B	29994	broad.mit.edu	37	2	160268984	160268984	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:160268984T>C	uc002uao.2	-	14	2891	c.2539A>G	c.(2539-2541)AGA>GGA	p.R847G	BAZ2B_uc002uap.2_Missense_Mutation_p.R811G|BAZ2B_uc002uaq.1_Missense_Mutation_p.R677G|BAZ2B_uc002uar.1_Missense_Mutation_p.R420G	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	847	Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TTTGGTGGTCTTCCTCTACGA	0.418000													15	18					0	0	0.00244969	0	0
SCN3A	6328	broad.mit.edu	37	2	165997165	165997165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:165997165G>A	uc002ucx.2	-	13	2507	c.2015C>T	c.(2014-2016)CCA>CTA	p.P672L	SCN3A_uc002ucy.2_Intron|SCN3A_uc002ucz.2_Intron|SCN3A_uc002uda.1_Intron|SCN3A_uc002udb.1_Intron	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	672						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TATCACCTCTGGGGGAAGTTG	0.478000													11	16					0	0	0.00136819	0	0
ABCB11	8647	broad.mit.edu	37	2	169792881	169792881	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:169792881G>A	uc002ueo.1	-	22	2799	c.2673C>T	c.(2671-2673)ATC>ATT	p.I891I	ABCB11_uc010zda.1_Silent_p.I333I|ABCB11_uc010zdb.1_Silent_p.I367I	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	891	ABC transmembrane type-1 2.|Helical; (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	AGAAGGCAATGATCATGGCCA	0.502000													33	53					0	0	0.000953801	0	0
DHRS9	10170	broad.mit.edu	37	2	169938290	169938290	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:169938290A>C	uc002uep.2	+	5	1703	c.199A>C	c.(199-201)ACA>CCA	p.T67P	DHRS9_uc002ueq.2_Missense_Mutation_p.T67P|DHRS9_uc010zdc.1_Missense_Mutation_p.T127P|DHRS9_uc002uer.1_Missense_Mutation_p.T67P|DHRS9_uc010zdd.1_Missense_Mutation_p.T67P|DHRS9_uc010zde.1_Missense_Mutation_p.T67P	NM_005771	NP_005762	Q9BPW9	DHRS9_HUMAN	NADP-dependent retinol dehydrogenase/reductase	67					9-cis-retinoic acid biosynthetic process|androgen metabolic process|epithelial cell differentiation|progesterone metabolic process|retinol metabolic process	integral to endoplasmic reticulum membrane|microsome	alcohol dehydrogenase (NAD) activity|binding|racemase and epimerase activity|retinol dehydrogenase activity|testosterone dehydrogenase (NAD+) activity				0						ATCAGGATCAACAGCTTTAAA	0.473000													33	44					0	0	0.00209593	0	0
TTN	7273	broad.mit.edu	37	2	179469580	179469580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:179469580G>A	uc010zfg.1	-	230	46756	c.46532C>T	c.(46531-46533)GCT>GTT	p.A15511V	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.A9206V|TTN_uc010zfi.1_Missense_Mutation_p.A9139V|TTN_uc010zfj.1_Missense_Mutation_p.A9014V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16438							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAAGATTCAGCTTTAATGTC	0.423000													22	42					0	0	0.00278032	0	0
TTN	7273	broad.mit.edu	37	2	179495596	179495596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:179495596C>T	uc010zfg.1	-	187	36609	c.36385G>A	c.(36385-36387)GAA>AAA	p.E12129K	TTN_uc010zfh.1_Missense_Mutation_p.E5824K|TTN_uc010zfi.1_Missense_Mutation_p.E5757K|TTN_uc010zfj.1_Missense_Mutation_p.E5632K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13056							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGAGATTTCGGTTTCAAAG	0.493000													50	47					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179605752	179605752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:179605752C>T	uc010zfh.1	-	46	11919	c.11695G>A	c.(11695-11697)GAA>AAA	p.E3899K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E3832K|TTN_uc010zfj.1_Missense_Mutation_p.E3707K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTGCAATTTCCTGCTCTGAG	0.428000													71	106					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179634970	179634970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:179634970G>A	uc010zfg.1	-	36	8682	c.8458C>T	c.(8458-8460)CAT>TAT	p.H2820Y	TTN_uc010zfh.1_Missense_Mutation_p.H2774Y|TTN_uc010zfi.1_Missense_Mutation_p.H2774Y|TTN_uc010zfj.1_Missense_Mutation_p.H2774Y|TTN_uc002unb.2_Missense_Mutation_p.H2820Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2820							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAGTGTCATGGGAAACACTA	0.413000													66	50					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179650817	179650817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:179650817C>T	uc010zfg.1	-	14	2352	c.2128G>A	c.(2128-2130)GAC>AAC	p.D710N	TTN_uc010zfh.1_Missense_Mutation_p.D664N|TTN_uc010zfi.1_Missense_Mutation_p.D664N|TTN_uc010zfj.1_Missense_Mutation_p.D664N|TTN_uc002unb.2_Missense_Mutation_p.D710N|TTN_uc010frg.1_Missense_Mutation_p.D292N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	710							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGGGCCTGGTCTACTGCAGCA	0.493000													23	20					0	0	0.00332997	0	0
CERKL	375298	broad.mit.edu	37	2	182409513	182409513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:182409513C>T	uc002unx.2	-	12	1458	c.1357G>A	c.(1357-1359)GGA>AGA	p.G453R	CERKL_uc002uny.2_Missense_Mutation_p.G427R|CERKL_uc010zfm.1_Missense_Mutation_p.G409R|CERKL_uc002unz.2_Missense_Mutation_p.G175R|CERKL_uc002uoa.2_Missense_Mutation_p.G358R|CERKL_uc002uob.2_Missense_Mutation_p.G175R|CERKL_uc002uoc.2_Missense_Mutation_p.G314R|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_Missense_Mutation_p.G222R|CERKL_uc002unw.2_Missense_Mutation_p.G23R	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	453					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GCCATACTTCCATTATTTAAT	0.284000													11	21					0	0	0.00136819	0	0
ZNF804A	91752	broad.mit.edu	37	2	185800571	185800571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:185800571G>A	uc002uph.2	+	4	1042	c.448G>A	c.(448-450)GAA>AAA	p.E150K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	150						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAACTGTAATGAAATTTCCCA	0.373000													23	25					0	0	0.00332997	0	0
COL3A1	1281	broad.mit.edu	37	2	189875410	189875410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:189875410C>T	uc002uqj.1	+	50	4165	c.4048C>T	c.(4048-4050)CTT>TTT	p.L1350F		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1350	Fibrillar collagen NC1.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TGAAGATGTCCTTGATGTGCA	0.438000													46	51					0	0	0.00361006	0	0
WDR75	84128	broad.mit.edu	37	2	190328664	190328664	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:190328664C>T	uc002uql.1	+	11	1150	c.1090C>T	c.(1090-1092)CAG>TAG	p.Q364*	WDR75_uc002uqm.1_Nonsense_Mutation_p.Q300*|WDR75_uc002uqn.1_Nonsense_Mutation_p.Q142*|WDR75_uc002uqo.1_Nonsense_Mutation_p.Q142*	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	364	WD 6.					nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			TTATTCTCTCCAGAGTGATAA	0.358000													26	30					0	0	0.000720815	0	0
Unknown	0	broad.mit.edu	37	2	190788427	190788427	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:190788427G>A	uc002uro.2	+	1	509	c.366G>A	c.(364-366)AGG>AGA	p.R122R						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		ATTATGATAGGATGTACAGTT	0.498000													19	21					0	0	0.000958276	0	0
STAT4	6775	broad.mit.edu	37	2	191931173	191931173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:191931173G>A	uc002usm.1	-	7	867	c.613C>T	c.(613-615)CTC>TTC	p.L205F	STAT4_uc002usn.1_Missense_Mutation_p.L205F|STAT4_uc010zgk.1_Missense_Mutation_p.L50F|STAT4_uc002uso.2_Missense_Mutation_p.L205F	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	205					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			TTGAAATCGAGGCTGTTAAGC	0.358000													18	14					0	0	0.00152264	0	0
DNAH7	56171	broad.mit.edu	37	2	196651833	196651833	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:196651833C>T	uc002utj.3	-	58	10880	c.10779G>A	c.(10777-10779)CGG>CGA	p.R3593R	DNAH7_uc002uti.3_Silent_p.R76R	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3593	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GTCCAAATTTCCGTCTTTCTT	0.413000													26	38					0	0	0.000878237	0	0
HECW2	57520	broad.mit.edu	37	2	197298137	197298137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:197298137G>A	uc002utm.1	-	2	194	c.11C>T	c.(10-12)TCA>TTA	p.S4L		NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	4					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CTCCCGGGCTGAACTAGCCAT	0.512000													14	21					0	0	0.00316338	0	0
CTLA4	1493	broad.mit.edu	37	2	204735604	204735604	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:204735604C>T	uc002vak.1	+	2	562	c.405C>T	c.(403-405)TAC>TAT	p.Y135Y	CTLA4_uc002val.1_Silent_p.Y135Y|CTLA4_uc010fty.1_Intron|CTLA4_uc010ftz.1_Intron	NM_005214	NP_005205	P16410	CTLA4_HUMAN	cytotoxic T-lymphocyte-associated protein 4	135	Ig-like V-type.|Extracellular (Potential).				B cell receptor signaling pathway|immune response|negative regulation of B cell proliferation|negative regulation of regulatory T cell differentiation|positive regulation of apoptosis|response to DNA damage stimulus|T cell costimulation	clathrin-coated endocytic vesicle|external side of plasma membrane|Golgi apparatus|integral to plasma membrane|perinuclear region of cytoplasm					0					Abatacept(DB01281)	AGCTCATGTACCCACCGCCAT	0.512000													10	29					0	0	0.000442599	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882929	228882929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:228882929G>A	uc002vpq.2	-	7	2688	c.2641C>T	c.(2641-2643)CCA>TCA	p.P881S	SPHKAP_uc002vpp.2_Missense_Mutation_p.P881S|SPHKAP_uc010zlx.1_Missense_Mutation_p.P881S	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	881						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGGGTGTTTGGGTGGATACTC	0.517000													65	95					0	0	0.00361006	0	0
SP100	6672	broad.mit.edu	37	2	231406079	231406079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:231406079C>T	uc002vqu.1	+	27	2536	c.2395C>T	c.(2395-2397)CCG>TCG	p.P799S	SP100_uc010fxp.1_Missense_Mutation_p.P117S	NM_001080391	NP_001073860	P23497	SP100_HUMAN	nuclear antigen Sp100 isoform 1	Error:Variant_position_missing_in_P23497_after_alignment					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|interspecies interaction between organisms|negative regulation of cellular component movement|negative regulation of DNA binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|negative regulation of transcription, DNA-dependent|negative regulation of viral transcription|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|response to cytokine stimulus|response to retinoic acid|response to type I interferon	cytoplasm|nuclear periphery|nucleolus|PML body	chromo shadow domain binding|DNA binding|identical protein binding|kinase binding|protein homodimerization activity|transcription coactivator activity|transcription corepressor activity|transcription factor binding			ovary(4)|central_nervous_system(1)	5		Renal(207;0.0112)|all_lung(227;0.0335)|all_hematologic(139;0.0749)|Lung NSC(271;0.142)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		CGCCTCAGAACCGTATTATGT	0.393000													20	23					0	0	0.00152264	0	0
HJURP	55355	broad.mit.edu	37	2	234750117	234750117	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:234750117G>A	uc002vvg.2	-	8	1375	c.1309C>T	c.(1309-1311)CGA>TGA	p.R437*	HJURP_uc010znd.1_Nonsense_Mutation_p.R376*|HJURP_uc010zne.1_Nonsense_Mutation_p.R345*	NM_018410	NP_060880	Q8NCD3	HJURP_HUMAN	Holliday junction recognition protein	437					cell cycle|CenH3-containing nucleosome assembly at centromere|centromeric core chromatin assembly|chromosome segregation|regulation of DNA binding|regulation of protein complex assembly	condensed chromosome kinetochore|cytoplasm|nucleolus|nucleoplasm	DNA binding|histone binding			ovary(1)	1		Breast(86;0.00204)|all_lung(227;0.00433)|Renal(207;0.00685)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0719)|Lung SC(224;0.128)		Epithelial(121;2.01e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000186)|Lung(119;0.00521)|LUSC - Lung squamous cell carcinoma(224;0.00829)		TGATCAAATCGGATTTCAATC	0.488000													59	83					0	0	0.00361006	0	0
KLHL30	377007	broad.mit.edu	37	2	239057733	239057733	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:239057733C>T	uc002vxr.1	+	6	1404	c.1371C>T	c.(1369-1371)CTC>CTT	p.L457L		NM_198582	NP_940984	Q0D2K2	KLH30_HUMAN	kelch-like 30	475	Kelch 5.										0		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		AGCTCTACCTCATTGGGGACA	0.657000													15	16					0	0	0.00074312	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239306319	239306320	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:239306319_239306320AG>GA	uc002vye.2	+	16	2028_2029	c.1909_1910AG>GA	c.(1909-1911)AGG>GAG	p.R637E	TRAF3IP1_uc002vyf.2_Missense_Mutation_p.R571E	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	637	Potential.|DISC1-interaction domain.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		GCAGGAGCAGAGGTGGGGGGTA	0.639000													19	19					0	0	6.4e-05	0	0
OR6B3	150681	broad.mit.edu	37	2	240984753	240984753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:240984753G>A	uc010zoe.1	-	1	737	c.737C>T	c.(736-738)ACC>ATC	p.T246I	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		GGTGACCACGGTGAGGTGAGA	0.577000													28	34					0	0	0.000720815	0	0
C2orf85	285093	broad.mit.edu	37	2	242814966	242814966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:242814966C>T	uc010fzu.1	+	2	1282	c.1259C>T	c.(1258-1260)TCC>TTC	p.S420F		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	420						integral to membrane				ovary(1)	1						GTCAAGGGCTCCCTTGCCCTC	0.632000													12	15					0	0	0.00136819	0	0
TMC2	117532	broad.mit.edu	37	20	2593840	2593840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:2593840G>A	uc002wgf.1	+	14	1759	c.1744G>A	c.(1744-1746)GAA>AAA	p.E582K	TMC2_uc002wgg.1_Missense_Mutation_p.E566K|TMC2_uc010zpw.1_Missense_Mutation_p.E414K|TMC2_uc010zpx.1_Missense_Mutation_p.E413K	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	582	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						TCCTCTGCAGGAATTCATGAG	0.537000													10	19					0	0	0.000673444	0	0
FAM113A	64773	broad.mit.edu	37	20	2816131	2816132	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:2816131_2816132GG>AA	uc002wgz.1	-	8	1838_1839	c.1341_1342CC>TT	c.(1339-1344)GCCCAT>GCTTAT	p.H448Y	FAM113A_uc002whb.1_Missense_Mutation_p.H299Y|FAM113A_uc002wha.1_Missense_Mutation_p.H299Y|FAM113A_uc010zqa.1_Missense_Mutation_p.H295Y|FAM113A_uc002whc.1_Missense_Mutation_p.H397Y	NM_022760	NP_073597	Q9H1Q7	F113A_HUMAN	hypothetical protein LOC64773	448							hydrolase activity|protein binding			ovary(2)	2						GTCCCCGAATGGGCAGGAGGCC	0.624000													12	26					0	0	6.4e-05	0	0
CDC25B	994	broad.mit.edu	37	20	3779075	3779075	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:3779075C>T	uc002wjn.2	+	3	1123	c.345C>T	c.(343-345)TCC>TCT	p.S115S	CDC25B_uc010zqk.1_Silent_p.S51S|CDC25B_uc010zql.1_Silent_p.S37S|CDC25B_uc010zqm.1_Silent_p.S51S|CDC25B_uc002wjl.2_Silent_p.S3S|CDC25B_uc002wjm.2_Silent_p.S3S|CDC25B_uc002wjo.2_Silent_p.S101S|CDC25B_uc002wjp.2_Silent_p.S115S|CDC25B_uc002wjq.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	115					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						GCATGGATTCCCCCAGCCCTA	0.478000													49	69					0	0	0.00361006	0	0
SPTLC3	55304	broad.mit.edu	37	20	13055077	13055077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:13055077C>T	uc002wod.1	+	4	828	c.539C>T	c.(538-540)TCT>TTT	p.S180F		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	180					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	TATGATGAGTCTATGAGGACA	0.428000													50	55					0	0	0.00361006	0	0
BPI	671	broad.mit.edu	37	20	36953197	36953197	+	Nonsense_Mutation	SNP	C	T	T	rs150749170		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:36953197C>T	uc002xib.2	+	9	1029	c.967C>T	c.(967-969)CGA>TGA	p.R323*		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	323					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				GTCCAAATTTCGACTGACAAC	0.507000													26	44					0	0	0.00428921	0	0
PTPRT	11122	broad.mit.edu	37	20	40944419	40944419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:40944419G>A	uc002xkg.2	-	12	2267	c.2083C>T	c.(2083-2085)CTC>TTC	p.L695F	PTPRT_uc010ggj.2_Missense_Mutation_p.L695F	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	695	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				AGGGGAGAGAGAGGAGGGTTC	0.498000													26	43					0	0	0.000720815	0	0
SEMG2	6407	broad.mit.edu	37	20	43851480	43851480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:43851480G>A	uc010ggz.2	+	2	1264	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	SEMG2_uc002xnk.2_Missense_Mutation_p.E403K|SEMG2_uc002xnl.2_Intron	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	403	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				TGGCCATAAGGAAAATAAAAT	0.383000													22	26					0	0	0.00229938	0	0
Unknown	0	broad.mit.edu	37	20	56063587	56063587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:56063587C>T	uc010zzl.1	-	1	497	c.497G>A	c.(496-498)GGA>GAA	p.G166E		NM_001008735	NP_001008735			high-mobility group box 1-like 1																		CTCAGGCTTTCCTTTAGCTTG	0.318000													13	16					0	0	0.00185496	0	0
CDH26	60437	broad.mit.edu	37	20	58587777	58587777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:58587777C>T	uc002ybe.2	+	18	2791	c.2491C>T	c.(2491-2493)CCT>TCT	p.P831S	CDH26_uc002ybf.1_Intron|CDH26_uc010zzy.1_RNA|CDH26_uc002ybg.2_Missense_Mutation_p.P322S|CDH26_uc002ybh.2_Missense_Mutation_p.P164S|CDH26_uc002ybi.2_Missense_Mutation_p.P123S	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	Error:Variant_position_missing_in_Q8IXH8_after_alignment					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			GTCAGGTGTTCCTTCCTAAAA	0.408000													22	24					0	0	0.00278032	0	0
MYT1	4661	broad.mit.edu	37	20	62830252	62830252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr20:62830252G>A	uc002yii.2	+	3	402	c.38G>A	c.(37-39)CGA>CAA	p.R13Q	MYT1_uc002yih.2_Missense_Mutation_p.R13Q	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	13					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GCTCGCACCCGATCCAAGGCC	0.562000													17	32					0	0	0.000566183	0	0
DOPEY2	9980	broad.mit.edu	37	21	37618713	37618713	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr21:37618713C>T	uc002yvg.2	+	19	4514	c.4435C>T	c.(4435-4437)CAG>TAG	p.Q1479*	DOPEY2_uc011aeb.1_Nonsense_Mutation_p.Q1428*|DOPEY2_uc002yvh.2_Nonsense_Mutation_p.Q330*	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1479					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						CCTGAACTTCCAGCAGGCCAT	0.662000													9	1					0	0	0.000274275	0	0
ETS2	2114	broad.mit.edu	37	21	40190402	40190402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr21:40190402G>A	uc002yxg.2	+	7	839	c.643G>A	c.(643-645)GGC>AGC	p.G215S	ETS2_uc002yxf.2_Missense_Mutation_p.G355S	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	215					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				TTACCCCAAAGGCGGCCTCCT	0.562000													65	7					0	0	0.00361006	0	0
DSCAM	1826	broad.mit.edu	37	21	41711242	41711242	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr21:41711242C>T	uc002yyq.1	-	7	1763	c.1311G>A	c.(1309-1311)ACG>ACA	p.T437T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	437	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCCACGTGATCGTGGGCAAAG	0.532000													23	1					0	0	0.00229938	0	0
DSCAM	1826	broad.mit.edu	37	21	42080489	42080489	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr21:42080489G>A	uc002yyq.1	-	2	704	c.252C>T	c.(250-252)TTC>TTT	p.F84F	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	84	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GAGGGAAGGGGAAAATTTGGA	0.498000													36	7					0	0	0.00375469	0	0
IGLL1	3543	broad.mit.edu	37	22	23915600	23915600	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr22:23915600G>A	uc002zxd.2	-	3	613	c.495C>T	c.(493-495)CCC>CCT	p.P165P	IGLL1_uc002zxe.2_3'UTR	NM_020070	NP_064455	P15814	IGLL1_HUMAN	immunoglobulin lambda-like polypeptide 1 isoform	165	C region (By similarity to lambda light- chain).|Ig-like C1-type.				immune response	extracellular region|membrane					0						TCTGTTTGGAGGGCGTGGTCA	0.587000													60	46					0	0	0.00361006	0	0
NEFH	4744	broad.mit.edu	37	22	29885119	29885119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr22:29885119G>A	uc003afo.2	+	4	1561	c.1490G>A	c.(1489-1491)GGA>GAA	p.G497E	NEFH_uc003afp.2_5'Flank	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	497	Tail.				cell death|nervous system development	neurofilament					0						gcagaagggggagaagaagAA	0.269000													11	17					0	0	0.000673444	0	0
MORC2	22880	broad.mit.edu	37	22	31331235	31331235	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr22:31331235C>T	uc003aje.1	-	19	2990	c.1626G>A	c.(1624-1626)GAG>GAA	p.E542E		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	604							ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						TGGACTTCACCTCAGTGGAAG	0.517000													8	10					0	0	0.000442599	0	0
SSTR3	6753	broad.mit.edu	37	22	37602744	37602745	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr22:37602744_37602745CC>TT	uc003ara.2	-	2	1160_1161	c.1098_1099GG>AA	c.(1096-1101)AAGGGG>AAAAGG	p.G367R	SSTR3_uc003arb.2_Missense_Mutation_p.G367R	NM_001051	NP_001042	P32745	SSR3_HUMAN	somatostatin receptor 3	367	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|induction of apoptosis by hormones|negative regulation of cell proliferation	integral to plasma membrane|nonmotile primary cilium	somatostatin receptor activity			lung(1)	1						ATCTCCTTCCCCTTGCCCCCCT	0.579000													14	13					0	0	6.4e-05	0	0
PLA2G6	8398	broad.mit.edu	37	22	38525475	38525475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr22:38525475G>A	uc003auy.1	-	8	1308	c.1172C>T	c.(1171-1173)TCC>TTC	p.S391F	PLA2G6_uc003auz.1_Missense_Mutation_p.S391F|PLA2G6_uc003ava.1_Missense_Mutation_p.S391F|PLA2G6_uc003avb.2_Missense_Mutation_p.S391F|PLA2G6_uc010gxk.1_RNA|PLA2G6_uc011ano.1_Missense_Mutation_p.S356F	NM_003560	NP_003551	O60733	PA2G6_HUMAN	phospholipase A2, group VI isoform a	391					cardiolipin biosynthetic process|cell death|lipid catabolic process	centrosome|membrane				ovary(1)	1	Melanoma(58;0.045)				Quinacrine(DB01103)	GCCGATTTTGGAGGCTAGGAA	0.567000													23	31					0	0	0.00332997	0	0
TNRC6B	23112	broad.mit.edu	37	22	40711294	40711294	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr22:40711294C>A	uc011aor.1	+	20	4897	c.4686C>A	c.(4684-4686)TTC>TTA	p.F1562L	TNRC6B_uc003aym.2_Missense_Mutation_p.F758L|TNRC6B_uc003ayn.3_Missense_Mutation_p.F1452L|TNRC6B_uc003ayo.2_Missense_Mutation_p.F1309L	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1562					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CAGCAAAGTTCCCTGATTACA	0.383000													19	23					7.41877e-09	2.03552e-08	0.00188189	1	0
CNTN4	152330	broad.mit.edu	37	3	2967440	2967440	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:2967440G>A	uc003bpc.2	+	12	1556	c.1335G>A	c.(1333-1335)AGG>AGA	p.R445R	CNTN4_uc003bpb.1_Silent_p.R117R|CNTN4_uc003bpd.1_Silent_p.R445R|CNTN4_uc003bpe.2_Silent_p.R117R|CNTN4_uc003bpf.2_Silent_p.R117R	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	445	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AGAAAGGAAGGGATATATTAA	0.343000													48	52					0	0	0.00361006	0	0
SRGAP3	9901	broad.mit.edu	37	3	9032286	9032286	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:9032286G>A	uc003brf.1	-	21	3472	c.2796C>T	c.(2794-2796)TCC>TCT	p.S932S	SRGAP3_uc003brg.1_Silent_p.S908S	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	932					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		AGTGCCCTTCGGAGAGCGCCT	0.652000			T	RAF1	pilocytic astrocytoma								5	11					0	0	0.000602214	0	0
COLQ	8292	broad.mit.edu	37	3	15498041	15498041	+	Nonsense_Mutation	SNP	G	A	A	rs113708721		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:15498041G>A	uc003bzx.2	-	14	1126	c.1000C>T	c.(1000-1002)CAA>TAA	p.Q334*	COLQ_uc003bzv.2_Nonsense_Mutation_p.Q324*|COLQ_uc003bzz.2_Nonsense_Mutation_p.Q325*|COLQ_uc010heo.2_Nonsense_Mutation_p.Q300*|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Nonsense_Mutation_p.Q193*|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	334					acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						ATGGCGTTTTGGGTGTTCAGC	0.547000													15	37					0	0	0.00316338	0	0
SCN10A	6336	broad.mit.edu	37	3	38751082	38751082	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:38751082C>T	uc003ciq.2	-	24	4168	c.4168G>A	c.(4168-4170)GAC>AAC	p.D1390N		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1390	III.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TACACGTTGTCCTCCCACTTG	0.363000													16	19					0	0	0.00074312	0	0
SCN10A	6336	broad.mit.edu	37	3	38798227	38798227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:38798227C>T	uc003ciq.2	-	9	1228	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	410					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCTTCAATTTCATCAGTGGTT	0.498000													70	63					0	0	0.00361006	0	0
SLC6A20	54716	broad.mit.edu	37	3	45812857	45812857	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:45812857C>T	uc011bai.1	-	6	911	c.787G>A	c.(787-789)GCC>ACC	p.A263T	SLC6A20_uc003cow.2_5'UTR|SLC6A20_uc011baj.1_Missense_Mutation_p.A226T	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	263	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TTGTAGCTGGCGAAGGCGATC	0.552000													41	43					0	0	0.00148497	0	0
CCR3	1232	broad.mit.edu	37	3	46307124	46307124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:46307124G>A	uc003cpg.1	+	4	1018	c.475G>A	c.(475-477)GGC>AGC	p.G159S	CCR3_uc003cpi.1_Missense_Mutation_p.G159S|CCR3_uc003cpj.1_Missense_Mutation_p.G159S|CCR3_uc003cpk.1_Missense_Mutation_p.G180S|CCR3_uc010hjb.1_Missense_Mutation_p.G177S|CCR3_uc003cpl.1_Missense_Mutation_p.G192S	NM_178329	NP_847899	P51677	CCR3_HUMAN	CC chemokine receptor 3 isoform 1	159	Helical; Name=4; (Potential).				cell adhesion|cellular defense response|chemotaxis|elevation of cytosolic calcium ion concentration|G-protein signaling, coupled to cAMP nucleotide second messenger|inflammatory response|interspecies interaction between organisms|positive regulation of angiogenesis	integral to plasma membrane				ovary(3)|lung(3)|breast(1)|kidney(1)	8				BRCA - Breast invasive adenocarcinoma(193;0.00119)|KIRC - Kidney renal clear cell carcinoma(197;0.0183)|Kidney(197;0.0216)		CGTCACCTGGGGCCTGGCAGT	0.507000													29	38					0	0	0.00209593	0	0
PRKAR2A	5576	broad.mit.edu	37	3	48802507	48802507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:48802507G>A	uc010hki.1	-	8	1044	c.803C>T	c.(802-804)TCA>TTA	p.S268L	PRKAR2A_uc003cux.1_Missense_Mutation_p.S268L|PRKAR2A_uc003cuy.1_Missense_Mutation_p.S268L	NM_004157	NP_004148	P13861	KAP2_HUMAN	cAMP-dependent protein kinase, regulatory	268	cAMP 2.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|membrane fraction	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000176)|Kidney(197;0.00246)|KIRC - Kidney renal clear cell carcinoma(197;0.00261)		CATTCGTTCTGACACCTGAAA	0.378000													19	15					0	0	0.00188189	0	0
DOCK3	1795	broad.mit.edu	37	3	51267025	51267025	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:51267025G>A	uc011bds.1	+	19	1925	c.1902G>A	c.(1900-1902)GGG>GGA	p.G634G		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	634	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		ATGTCAGTGGGGAGGAAATTG	0.463000													17	22					0	0	0.000958276	0	0
ITIH3	3699	broad.mit.edu	37	3	52836375	52836375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:52836375C>T	uc003dfv.2	+	12	1445	c.1409C>T	c.(1408-1410)CCA>CTA	p.P470L	ITIH3_uc011bek.1_Missense_Mutation_p.P470L	NM_002217	NP_002208	Q06033	ITIH3_HUMAN	inter-alpha (globulin) inhibitor H3	470					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|liver(1)	3				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		GTGGCCAACCCACTGCTGACG	0.592000													11	22					0	0	0.00400662	0	0
C3orf67	200844	broad.mit.edu	37	3	58849474	58849475	+	Missense_Mutation	DNP	TC	GT	GT	rs112633530		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:58849474_58849475TC>GT	uc003dkt.1	-	12	1436_1437	c.1027_1028GA>AC	c.(1027-1029)GAG>ACG	p.E343T	C3orf67_uc003dks.1_Missense_Mutation_p.E158T|uc003dku.1_Intron|C3orf67_uc003dkv.1_Missense_Mutation_p.E158T|C3orf67_uc003dkw.2_Missense_Mutation_p.E238T	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	343											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		CTGGGATTCCTCTGCCTGCTGG	0.515000													57	79					0	0	6.4e-05	0	0
CNTN3	5067	broad.mit.edu	37	3	74334516	74334517	+	Missense_Mutation	DNP	AA	GC	GC			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:74334516_74334517AA>GC	uc003dpm.1	-	19	2723_2724	c.2643_2644TT>GC	c.(2641-2646)GCTTAC>GCGCAC	p.Y882H		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	882	Fibronectin type-III 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		GCACTGTTGTAAGCCCGGACAG	0.485000													55	98					0	0	6.4e-05	0	0
POU1F1	5449	broad.mit.edu	37	3	87313611	87313611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:87313611C>T	uc003dqq.1	-	3	391	c.266G>A	c.(265-267)GGA>GAA	p.G89E	POU1F1_uc010hoj.1_Missense_Mutation_p.G115E	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	89					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		AGGAGGAAATCCATGACTCAA	0.423000													49	43					0	0	0.00361006	0	0
OR5H1	26341	broad.mit.edu	37	3	97852162	97852162	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:97852162G>A	uc011bgt.1	+	1	621	c.621G>A	c.(619-621)CAG>CAA	p.Q207Q		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GTTCAATTCAGGTATTCAGCA	0.313000													19	29					0	0	0.000958276	0	0
KIAA1524	57650	broad.mit.edu	37	3	108279545	108279545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:108279545G>A	uc003dxb.3	-	14	2047	c.1778C>T	c.(1777-1779)CCT>CTT	p.P593L	KIAA1524_uc010hpv.1_3'UTR	NM_020890	NP_065941	Q8TCG1	CIP2A_HUMAN	p90 autoantigen	593						cytoplasm|integral to membrane	protein binding			ovary(2)|central_nervous_system(1)	3						ATTCAATCCAGGAACACCATC	0.343000													67	86					0	0	0.00361006	0	0
PLCXD2	257068	broad.mit.edu	37	3	111432890	111432890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:111432890C>T	uc003dya.2	+	3	1367	c.781C>T	c.(781-783)CAT>TAT	p.H261Y	PLCXD2_uc003dyb.2_Missense_Mutation_p.H261Y|PLCXD2_uc003dxz.2_Missense_Mutation_p.H261Y	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	261					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						GGGCTCCTTCCATGTCTCCCA	0.557000													19	28					0	0	0.000958276	0	0
TAGLN3	29114	broad.mit.edu	37	3	111719781	111719781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:111719781G>A	uc003dym.2	+	3	721	c.343G>A	c.(343-345)GAT>AAT	p.D115N	TAGLN3_uc003dyl.2_Missense_Mutation_p.D115N|TAGLN3_uc003dyn.2_Missense_Mutation_p.D115N|TAGLN3_uc003dyo.2_Missense_Mutation_p.D115N	NM_001008272	NP_001008273	Q9UI15	TAGL3_HUMAN	transgelin 3	115	CH.				central nervous system development|muscle organ development						0						TCAGACGGTGGATCTATGGGA	0.478000													54	91					0	0	0.00361006	0	0
CCDC80	151887	broad.mit.edu	37	3	112356885	112356885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:112356885C>T	uc003dzf.2	-	2	2086	c.1868G>A	c.(1867-1869)CGA>CAA	p.R623Q	CCDC80_uc011bhv.1_Missense_Mutation_p.R623Q|CCDC80_uc003dzg.2_Missense_Mutation_p.R623Q|CCDC80_uc003dzh.1_Missense_Mutation_p.R623Q	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	623										ovary(2)	2						AAGGAGTCTTCGTTTGCCTTC	0.463000													69	74					0	0	0.00361006	0	0
CD200R1	131450	broad.mit.edu	37	3	112647745	112647745	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:112647745C>T	uc003dzk.1	-	4	851	c.618G>A	c.(616-618)TGG>TGA	p.W206*	CD200R1_uc003dzj.1_Nonsense_Mutation_p.W229*|CD200R1_uc011bhx.1_Nonsense_Mutation_p.W184*	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	206	Ig-like C2-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TGTGGACCTCCCAGTGGCATG	0.498000													20	22					0	0	0.00332997	0	0
KIAA2018	205717	broad.mit.edu	37	3	113374842	113374842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:113374842G>A	uc003eam.2	-	7	6098	c.5687C>T	c.(5686-5688)CCT>CTT	p.P1896L	KIAA2018_uc003eal.2_Missense_Mutation_p.P1840L	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1896					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						ACTTGAAAAAGGAATATTCAA	0.408000													36	46					0	0	0.00375469	0	0
STXBP5L	9515	broad.mit.edu	37	3	120876460	120876460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:120876460C>T	uc003eec.3	+	9	1003	c.863C>T	c.(862-864)ACC>ATC	p.T288I	STXBP5L_uc011bji.1_Missense_Mutation_p.T288I	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	288					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		CCTTTCCAGACCACAATTCCA	0.418000													19	26					0	0	0.00152264	0	0
STXBP5L	9515	broad.mit.edu	37	3	120941960	120941960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:120941960C>T	uc003eec.3	+	11	1207	c.1067C>T	c.(1066-1068)CCT>CTT	p.P356L	STXBP5L_uc011bji.1_Missense_Mutation_p.P356L	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	356					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		ATGGATCATCCTATTGTTGAA	0.328000													36	42					0	0	0.00111076	0	0
STXBP5L	9515	broad.mit.edu	37	3	121001148	121001148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:121001148C>T	uc003eec.3	+	20	2286	c.2146C>T	c.(2146-2148)CCT>TCT	p.P716S	STXBP5L_uc011bji.1_Intron	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	716					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TAACTTTTATCCTGATTTAAC	0.388000													26	23					0	0	0.00106085	0	0
ILDR1	286676	broad.mit.edu	37	3	121712360	121712361	+	Missense_Mutation	DNP	GG	AA	AA	rs144533401		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:121712360_121712361GG>AA	uc003ees.2	-	7	1341_1342	c.1235_1236CC>TT	c.(1234-1236)CCC>CTT	p.P412L	ILDR1_uc003eeq.2_Missense_Mutation_p.P380L|ILDR1_uc003eer.2_Missense_Mutation_p.P368L|ILDR1_uc010hrg.2_Missense_Mutation_p.P323L	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	412	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		ACCAGTGTATGGGTGACCCATT	0.609000													13	16					0	0	6.4e-05	0	0
ILDR1	286676	broad.mit.edu	37	3	121712468	121712468	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:121712468G>A	uc003ees.2	-	7	1234	c.1128C>T	c.(1126-1128)TTC>TTT	p.F376F	ILDR1_uc003eeq.2_Silent_p.F344F|ILDR1_uc003eer.2_Silent_p.F332F|ILDR1_uc010hrg.2_Silent_p.F287F	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	376	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GCTCCTGGTGGAAATCAGGGT	0.602000													33	12					0	0	0.00375469	0	0
COL6A6	131873	broad.mit.edu	37	3	130285721	130285721	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:130285721G>A	uc010htl.2	+	4	1489	c.1458G>A	c.(1456-1458)TTG>TTA	p.L486L		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	486	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GCTGGGACTTGGAATTTGAGA	0.483000													61	55					0	0	0.00361006	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133666219	133666219	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:133666219G>A	uc003eqa.3	-	9	1450	c.1176C>T	c.(1174-1176)TTC>TTT	p.F392F	SLCO2A1_uc003eqb.3_Silent_p.F316F|SLCO2A1_uc011blv.1_Silent_p.F211F	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	392	Helical; Name=9; (Potential).				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						CTTGTAGAGAGAAAACAAAGC	0.507000													13	17					0	0	0.00185496	0	0
STAG1	10274	broad.mit.edu	37	3	136240063	136240063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:136240063G>A	uc003era.1	-	7	960	c.668C>T	c.(667-669)ACC>ATC	p.T223I	STAG1_uc003erb.1_Missense_Mutation_p.T223I|STAG1_uc003erc.1_5'UTR|STAG1_uc010hua.1_Missense_Mutation_p.T86I|STAG1_uc003erd.2_Missense_Mutation_p.T126I|STAG1_uc003ere.2_Missense_Mutation_p.T223I	NM_005862	NP_005853	Q8WVM7	STAG1_HUMAN	stromal antigen 1	223					cell division|chromosome segregation|mitotic metaphase/anaphase transition|mitotic prometaphase	cell junction|chromatin|chromosome, centromeric region|nucleoplasm	protein binding			ovary(2)	2						ACCAGCCAGGGTACTTGTATG	0.323000													29	24					0	0	0.00106085	0	0
DZIP1L	199221	broad.mit.edu	37	3	137822710	137822710	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:137822710C>A	uc003erq.2	-	2	467	c.104G>T	c.(103-105)TGG>TTG	p.W35L	DZIP1L_uc003err.1_Missense_Mutation_p.W35L	NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	35						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						AATGCGTCTCCAGTCCATGCT	0.592000													8	214					0.00307968	0.00838521	0.00307968	1	0
XRN1	54464	broad.mit.edu	37	3	142090133	142090133	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:142090133G>A	uc003eus.2	-	26	3083	c.3016C>T	c.(3016-3018)CAA>TAA	p.Q1006*	XRN1_uc010huu.2_Nonsense_Mutation_p.Q472*|XRN1_uc003eut.2_Nonsense_Mutation_p.Q1006*|XRN1_uc003euu.2_Nonsense_Mutation_p.Q1006*	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	1006					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						ACATCCTCTTGGCTATTTTTG	0.313000													21	34					0	0	0.00332997	0	0
ATR	545	broad.mit.edu	37	3	142215206	142215206	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:142215206G>A	uc003eux.3	-	34	6017	c.5895C>T	c.(5893-5895)TCC>TCT	p.S1965S		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1965	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CCATTACCTTGGACCAGAGCC	0.363000								Other_conserved_DNA_damage_response_genes					19	37					0	0	0.000958276	0	0
IGSF10	285313	broad.mit.edu	37	3	151165605	151165605	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:151165605G>A	uc011bod.1	-	4	2164	c.2164C>T	c.(2164-2166)CGG>TGG	p.R722W		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	722					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTTAATTCCCGATAGTTGTGC	0.493000													24	27					0	0	0.000720815	0	0
WDR49	151790	broad.mit.edu	37	3	167246977	167246977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:167246977C>T	uc003fev.1	-	10	1519	c.1213G>A	c.(1213-1215)GAT>AAT	p.D405N	WDR49_uc003feu.1_Missense_Mutation_p.D230N|WDR49_uc011bpd.1_Missense_Mutation_p.D469N|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	405	WD 6.									large_intestine(1)|ovary(1)|skin(1)	3						TTATATATATCCCAAAATCTG	0.383000													18	27					0	0	0.000958276	0	0
EIF4G1	1981	broad.mit.edu	37	3	184052517	184052517	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:184052517C>T	uc003fnp.2	+	33	4819	c.4621C>T	c.(4621-4623)CTG>TTG	p.L1541L	EIF4G1_uc003fnt.2_Silent_p.L1252L|EIF4G1_uc003fnq.2_Silent_p.L1454L|EIF4G1_uc003fnr.2_Silent_p.L1377L|EIF4G1_uc010hxx.2_Silent_p.L1548L|EIF4G1_uc003fns.2_Silent_p.L1501L|EIF4G1_uc010hxy.2_Silent_p.L1548L|EIF4G1_uc003fnv.3_Silent_p.L1542L|EIF4G1_uc003fnu.3_Silent_p.L1541L|EIF4G1_uc003fnw.2_Silent_p.L1548L|EIF4G1_uc003fny.3_Silent_p.L1345L|EIF4G1_uc003foa.2_Silent_p.L213L|FAM131A_uc003fob.1_5'Flank|FAM131A_uc003foc.2_5'Flank|FAM131A_uc003fod.1_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	1541	W2.|EIF4A-binding.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCTTGCAGACCTGCTGCGGAT	0.602000													20	16					0	0	0.00278032	0	0
FGF12	2257	broad.mit.edu	37	3	191861816	191861816	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:191861816C>T	uc003fsx.2	-	5	1540	c.714G>A	c.(712-714)GTG>GTA	p.V238V	FGF12_uc003fsy.2_Silent_p.V176V	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	238				TPTMNGGKVVNQDST -> HHHDGGKL (in Ref. 2; AAB18786).	cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		AATCTTGATTCACAACTTTGC	0.269000													65	83					0	0	0.00361006	0	0
ATP13A4	84239	broad.mit.edu	37	3	193185144	193185144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:193185144C>T	uc003ftd.2	-	10	1183	c.1075G>A	c.(1075-1077)GCT>ACT	p.A359T	ATP13A4_uc003fte.1_Missense_Mutation_p.A359T|ATP13A4_uc011bsr.1_5'UTR|ATP13A4_uc010hzi.2_RNA|ATP13A4_uc003ftf.3_Missense_Mutation_p.A65T	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	359	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CCAGAGCAAGCTGCCTTGGCC	0.498000													24	20					0	0	0.00229938	0	0
TMEM44	93109	broad.mit.edu	37	3	194349132	194349132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:194349132C>T	uc010hzn.2	-	2	413	c.244G>A	c.(244-246)GCC>ACC	p.A82T	TMEM44_uc003fue.2_Missense_Mutation_p.A82T|TMEM44_uc003fud.2_Missense_Mutation_p.A82T|TMEM44_uc003fuf.2_Missense_Mutation_p.A82T|TMEM44_uc011bsv.1_Missense_Mutation_p.A82T|TMEM44_uc003fuh.1_RNA	NM_001011655	NP_001011655	Q2T9K0	TMM44_HUMAN	transmembrane protein 44 isoform b	82	Helical; (Potential).					integral to membrane					0	all_cancers(143;1.41e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;4.34e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;9.06e-06)		AGCTGTCTGGCCAGAAGAGCC	0.527000													4	10					0	0	0.00116845	0	0
LOC220729	220729	broad.mit.edu	37	3	197348674	197348674	+	RNA	SNP	A	G	G	rs144273946	by1000genomes	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr3:197348674A>G	uc011bug.1	-	4		c.417T>C			LOC220729_uc003fxw.2_RNA|LOC220729_uc003fxy.2_RNA|LOC220729_uc010iao.1_Intron					Homo sapiens cDNA FLJ60865 complete cds, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC 1.3.5.1).												0						GGCTCTGTCCACCAAATGCAC	0.478000													3	80					0	0	6.4e-05	0	0
FAM193A	8603	broad.mit.edu	37	4	2661700	2661700	+	Missense_Mutation	SNP	C	T	T	rs140213757		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:2661700C>T	uc010icl.2	+	8	1142	c.791C>T	c.(790-792)TCG>TTG	p.S264L	FAM193A_uc010ick.2_Missense_Mutation_p.S464L|FAM193A_uc003gfd.2_Missense_Mutation_p.S264L|FAM193A_uc011bvm.1_Missense_Mutation_p.S288L|FAM193A_uc011bvn.1_Missense_Mutation_p.S264L|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.S118L	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	264										ovary(3)	3						TCTGCAAGCTCGGGGTCCGGC	0.547000													13	24					0	0	0.00185496	0	0
SORCS2	57537	broad.mit.edu	37	4	7705995	7705995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:7705995G>A	uc003gkb.3	+	14	1852	c.1852G>A	c.(1852-1854)GAG>AAG	p.E618K	SORCS2_uc011bwi.1_Missense_Mutation_p.E446K	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	618	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						GCCAGGGGACGAGACGCTGGT	0.657000													5	6					0	0	0.00116845	0	0
ZNF518B	85460	broad.mit.edu	37	4	10445217	10445217	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:10445217C>T	uc003gmn.2	-	3	3223	c.2736G>A	c.(2734-2736)AAG>AAA	p.K912K		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	912					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						TTGAAGGATCCTTGAGACAGC	0.413000													49	61					0	0	0.00361006	0	0
LGI2	55203	broad.mit.edu	37	4	25030187	25030187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:25030187C>T	uc003grf.2	-	2	310	c.211G>A	c.(211-213)GGG>AGG	p.G71R		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	71						extracellular region					0		Breast(46;0.173)				GAAAACGTCCCATTTACCAGG	0.507000													4	13					0	0	0.00024832	0	0
ARAP2	116984	broad.mit.edu	37	4	36069787	36069787	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:36069787C>T	uc003gsq.1	-	33	5195	c.4857G>A	c.(4855-4857)AAG>AAA	p.K1619K	ARAP2_uc003gso.2_Intron	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	1619					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						GTTTATCGTCCTTGTGCTCCA	0.512000													51	69					0	0	0.00361006	0	0
TXK	7294	broad.mit.edu	37	4	48116367	48116367	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:48116367C>T	uc003gxx.3	-	2	155	c.69G>A	c.(67-69)AAG>AAA	p.K23K	TXK_uc003gxy.1_Silent_p.K23K	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	23						cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						AGACTTACCGCTTCTGCACTG	0.373000													23	21					0	0	0.00278032	0	0
LPHN3	23284	broad.mit.edu	37	4	62849229	62849229	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:62849229G>A	uc010ihh.2	+	16	3113	c.2940G>A	c.(2938-2940)AGG>AGA	p.R980R	LPHN3_uc003hcq.3_Silent_p.R980R|LPHN3_uc003hct.2_Silent_p.R373R	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	967	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						ATTCACGTAGGAAATACTTTT	0.453000													60	90					0	0	0.00361006	0	0
PARM1	25849	broad.mit.edu	37	4	75938092	75938092	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:75938092G>A	uc003hih.1	+	2	741	c.501G>A	c.(499-501)GAG>GAA	p.E167E		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	167	Extracellular (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CACCACCTGAGGTCTTTTCTG	0.582000													99	117					0	0	0.00361006	0	0
PRKG2	5593	broad.mit.edu	37	4	82063963	82063963	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:82063963G>A	uc003hmh.2	-	10	1406	c.1392C>T	c.(1390-1392)TTC>TTT	p.F464F	PRKG2_uc011ccf.1_Silent_p.F44F|PRKG2_uc011ccg.1_Silent_p.F44F|PRKG2_uc011cch.1_Intron	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	464	Protein kinase.|ATP (By similarity).				platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						CAACTCTTCCGAACCCACCAA	0.423000													88	16					0	0	0.00361006	0	0
ADH6	130	broad.mit.edu	37	4	100134848	100134848	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:100134848C>T	uc003hup.3	-	3	271	c.177G>A	c.(175-177)TTG>TTA	p.L59L	uc003hum.1_Intron|ADH6_uc003huo.2_Silent_p.L59L|ADH6_uc011cef.1_Intron|ADH6_uc010ile.2_Silent_p.L59L	NM_000672	NP_000663	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 2	59					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	ACAAGAGGTCCAAGTGTTTAC	0.502000													31	40					0	0	0.001512	0	0
TET2	54790	broad.mit.edu	37	4	106156322	106156322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:106156322C>T	uc003hxk.2	+	3	1609	c.1223C>T	c.(1222-1224)CCC>CTC	p.P408L	TET2_uc011cez.1_Missense_Mutation_p.P429L|TET2_uc003hxj.2_RNA|TET2_uc010ilp.1_Missense_Mutation_p.P408L|TET2_uc003hxi.1_Missense_Mutation_p.P408L	NM_001127208	NP_001120680	Q6N021	TET2_HUMAN	tet oncogene family member 2 isoform a	408	Pro-rich.				cell cycle|myeloid cell differentiation		metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			haematopoietic_and_lymphoid_tissue(732)|pancreas(1)	733		Myeloproliferative disorder(5;0.0393)		OV - Ovarian serous cystadenocarcinoma(123;7.18e-08)		CTTCTTTCTCCCCCTCCTCCT	0.468000			Mis N|F		MDS								45	40					0	0	0.00361006	0	0
ADAD1	132612	broad.mit.edu	37	4	123350868	123350868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:123350868C>T	uc003ieo.2	+	13	1937	c.1705C>T	c.(1705-1707)CCC>TCC	p.P569S	ADAD1_uc003iep.2_Missense_Mutation_p.P558S|ADAD1_uc003ieq.2_Missense_Mutation_p.P551S	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	569	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TGTGAAATCTCCCTGCATAGA	0.333000													31	54					0	0	0.0024448	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148944420	148944420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:148944420C>T	uc003ilf.2	+	19	1723	c.1723C>T	c.(1723-1725)CGG>TGG	p.R575W	ARHGAP10_uc003ilg.2_Missense_Mutation_p.R224W|ARHGAP10_uc003ilh.2_Missense_Mutation_p.R156W|ARHGAP10_uc003ili.2_Missense_Mutation_p.R8W	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	575					apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		GAAGATTTTTCGGACGCCGCC	0.488000													32	37					0	0	0.00375469	0	0
PDGFC	56034	broad.mit.edu	37	4	157771501	157771501	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:157771501C>T	uc003iph.1	-	2	677	c.186G>A	c.(184-186)AGG>AGA	p.R62R	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_Intron|PDGFC_uc011cir.1_5'UTR	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	62	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		TATGAGGAAACCTTGGGCTGT	0.368000													21	36					0	0	0.00229938	0	0
TMEM144	55314	broad.mit.edu	37	4	159136446	159136447	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:159136446_159136447GG>AA	uc003ipx.2	+	4	733_734	c.213_214GG>AA	c.(211-216)GGGGGC>GGAAGC	p.G72S	TMEM144_uc010iqi.2_RNA	NM_018342	NP_060812	Q7Z5S9	TM144_HUMAN	transmembrane protein 144	72	Helical; (Potential).					integral to membrane					0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0539)		CAATGCTTGGGGGCTGCATTTG	0.381000													40	28					0	0	6.4e-05	0	0
KIAA0947	23379	broad.mit.edu	37	5	5463006	5463006	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:5463006T>C	uc003jdm.3	+	13	3781	c.3559T>C	c.(3559-3561)TAT>CAT	p.Y1187H		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1187										ovary(1)|central_nervous_system(1)	2						GTTAGGGGATTATAGTTCAGG	0.373000													3	20					0	0	0.00024832	0	0
DNAH5	1767	broad.mit.edu	37	5	13901400	13901400	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:13901400C>T	uc003jfd.2	-	14	2055	c.2013G>A	c.(2011-2013)CTG>CTA	p.L671L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	671	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCTCAAACTCCAGGAGGACCT	0.517000									Kartagener_syndrome				41	26					0	0	0.00321405	0	0
PRDM9	56979	broad.mit.edu	37	5	23509604	23509604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:23509604C>T	uc003jgo.2	+	3	277	c.95C>T	c.(94-96)TCC>TTC	p.S32F		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	32	KRAB-related.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						AAAGACATTTCCATATACTTC	0.413000										HNSCC(3;0.000094)			68	183					0	0	0.00361006	0	0
CDH9	1007	broad.mit.edu	37	5	26885885	26885885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:26885885C>T	uc003jgs.1	-	11	1889	c.1720G>A	c.(1720-1722)GAT>AAT	p.D574N	CDH9_uc011cnv.1_Missense_Mutation_p.D167N	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	574	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ATTGGATAATCGTTGTCAAAG	0.453000													16	29					0	0	0.00316338	0	0
CDH6	1004	broad.mit.edu	37	5	31323206	31323206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:31323206G>A	uc003jhe.1	+	12	2490	c.2164G>A	c.(2164-2166)GAA>AAA	p.E722K		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	722	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						AAGGTTAAAGGAAAATGACAC	0.562000													14	41					0	0	0.00244969	0	0
IL7R	3575	broad.mit.edu	37	5	35875648	35875648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:35875648C>T	uc003jjs.2	+	7	924	c.835C>T	c.(835-837)CAT>TAT	p.H279Y	IL7R_uc011coo.1_Silent_p.I247I|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	279	Box 1 motif.|Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			TCTCCCCGATCATAAGAAGAC	0.443000													45	33					0	0	0.00361006	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049425	36049425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:36049425C>T	uc003jjz.1	-	4	502	c.409G>A	c.(409-411)GAG>AAG	p.E137K	UGT3A2_uc011cos.1_Missense_Mutation_p.E103K|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	137	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCGAAGTTCTCATTCTTTAAG	0.363000													62	31					0	0	0.00361006	0	0
OSMR	9180	broad.mit.edu	37	5	38886151	38886151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:38886151G>A	uc003jln.1	+	7	1217	c.850G>A	c.(850-852)GAA>AAA	p.E284K	OSMR_uc003jlm.1_Missense_Mutation_p.E284K	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	284	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					ATTTTCTGGGGAAAAGAAACT	0.338000													19	41					0	0	0.00121646	0	0
CMYA5	202333	broad.mit.edu	37	5	79031658	79031658	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:79031658G>A	uc003kgc.2	+	2	7142	c.7070G>A	c.(7069-7071)TGG>TAG	p.W2357*		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2357						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCATCTAAATGGAATATTTCT	0.373000													15	5					0	0	0.00244969	0	0
GPR98	84059	broad.mit.edu	37	5	89970009	89970009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:89970009G>A	uc003kju.2	+	23	5164	c.5068G>A	c.(5068-5070)GAA>AAA	p.E1690K	GPR98_uc003kjt.2_5'UTR|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1690	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCCTGAAAAGGAAACGACTGA	0.423000													9	4					0	0	0.000673444	0	0
FSTL4	23105	broad.mit.edu	37	5	132535121	132535121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:132535121G>A	uc003kyn.1	-	16	2413	c.2195C>T	c.(2194-2196)TCG>TTG	p.S732L	FSTL4_uc003kym.1_Missense_Mutation_p.S381L	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	732						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGAGATGCCCGAGTTTATTTG	0.572000													25	2					0	0	0.00127121	0	0
SEC24A	10802	broad.mit.edu	37	5	134002605	134002605	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:134002605C>T	uc003kzs.2	+	3	946	c.658C>T	c.(658-660)CCA>TCA	p.P220S	SEC24A_uc011cxu.1_5'UTR	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	220	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AGGCCCACCCCCAGTGAGGGC	0.522000													35	5					0	0	0.000953801	0	0
DNAJC18	202052	broad.mit.edu	37	5	138773084	138773084	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:138773084C>T	uc003len.2	-	2	209	c.204G>A	c.(202-204)GAG>GAA	p.E68E	DNAJC18_uc010jff.2_Silent_p.E68E	NM_152686	NP_689899	Q9H819	DJC18_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 18	68					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			ovary(1)|kidney(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GCAGCTGTTCCTCACTATACG	0.368000													19	1					0	0	0.000958276	0	0
PCDHB10	56126	broad.mit.edu	37	5	140572788	140572788	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:140572788C>T	uc003lix.2	+	1	837	c.663C>T	c.(661-663)TCC>TCT	p.S221S		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	221	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGTCTCCATCCAGGTCTGGGA	0.542000													43	3					0	0	0.00195071	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140744593	140744593	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:140744593C>T	uc003lju.1	+	1	696	c.696C>T	c.(694-696)GTC>GTT	p.V232V	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.V232V	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	232	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGTTACGGTCCTCGACGCAA	0.587000													20	6					0	0	0.00229938	0	0
GABRP	2568	broad.mit.edu	37	5	170222424	170222424	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:170222424C>T	uc003mau.2	+	5	651	c.453C>T	c.(451-453)GCC>GCT	p.A151A	GABRP_uc011dev.1_Silent_p.A151A	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	151	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCCTGTATGCCCTCAGGTACG	0.532000													24	1					0	0	0.00278032	0	0
FLT4	2324	broad.mit.edu	37	5	180043405	180043405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:180043405C>T	uc003mma.3	-	23	3260	c.3181G>A	c.(3181-3183)GAC>AAC	p.D1061N	FLT4_uc003mlz.3_Missense_Mutation_p.D1061N	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	1061	Cytoplasmic (Potential).|Protein kinase.				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TTGTAGATGTCCCGGGCAAGG	0.607000									Congenital_Hereditary_Lymphedema				24	0					0	0	0.00395357	0	0
F13A1	2162	broad.mit.edu	37	6	6174883	6174883	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:6174883G>A	uc003mwv.2	-	12	1800	c.1677C>T	c.(1675-1677)ACC>ACT	p.T559T	F13A1_uc011dib.1_Silent_p.T496T	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	559					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	CGGTGTAGAAGGTGATGTTGG	0.502000													38	62					0	0	0.00428921	0	0
SNRNP48	154007	broad.mit.edu	37	6	7606281	7606281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:7606281C>T	uc003mxr.2	+	8	883	c.824C>T	c.(823-825)TCA>TTA	p.S275L	SNRNP48_uc003mxs.2_RNA|SNRNP48_uc003mxt.1_Missense_Mutation_p.S27L	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	275					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						GAAAGGCGATCAGCTTCAGTA	0.418000													28	44					0	0	0.00127121	0	0
JARID2	3720	broad.mit.edu	37	6	15511561	15511561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:15511561G>A	uc003nbj.2	+	13	3125	c.2881G>A	c.(2881-2883)GAA>AAA	p.E961K	JARID2_uc011div.1_Missense_Mutation_p.E789K	NM_004973	NP_004964	Q92833	JARD2_HUMAN	jumonji, AT rich interactive domain 2 protein	961	JmjC.				central nervous system development|chromatin modification|negative regulation of histone methylation|positive regulation of histone H3-K9 methylation|stem cell differentiation|transcription, DNA-dependent		chromatin binding			ovary(2)|lung(1)|pancreas(1)	4	Breast(50;0.0142)|Ovarian(93;0.103)	all_hematologic(90;0.00612)				GAACAAGCTGGAAGATGTGGT	0.572000													34	58					0	0	0.00428921	0	0
SLC17A3	10786	broad.mit.edu	37	6	25862543	25862543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:25862543G>A	uc003nfi.3	-	3	331	c.221C>T	c.(220-222)TCC>TTC	p.S74F	SLC17A3_uc003nfk.3_Missense_Mutation_p.S74F|SLC17A3_uc011djz.1_Missense_Mutation_p.S74F|SLC17A3_uc011dka.1_Missense_Mutation_p.S74F	NM_006632	NP_006623	O00476	NPT4_HUMAN	solute carrier family 17 (sodium phosphate),	74					glucose-6-phosphate transport|urate metabolic process	apical plasma membrane|brush border membrane|endoplasmic reticulum membrane|integral to plasma membrane|perinuclear region of cytoplasm	drug transmembrane transporter activity|efflux transmembrane transporter activity|organic anion transmembrane transporter activity|sodium:phosphate symporter activity|toxin transporter activity|urate transmembrane transporter activity|voltage-gated anion channel activity				0						ATTGAGCTGGGATTGAGGGCT	0.448000													31	38					0	0	0.00209593	0	0
ZNF184	7738	broad.mit.edu	37	6	27419892	27419892	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:27419892G>A	uc003njj.2	-	5	2257	c.1446C>T	c.(1444-1446)GCC>GCT	p.A482A	ZNF184_uc010jqv.2_Silent_p.A482A|ZNF184_uc003nji.2_Silent_p.A482A	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	482	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGTAACTGAAGGCCTTTCCAC	0.403000													21	34					0	0	0.00278032	0	0
ZNF323	64288	broad.mit.edu	37	6	28294089	28294089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:28294089C>T	uc003nla.2	-	4	1475	c.1075G>A	c.(1075-1077)GCC>ACC	p.A359T	ZNF323_uc003nld.2_Missense_Mutation_p.A359T|ZNF323_uc010jra.2_Missense_Mutation_p.A359T|ZNF323_uc003nlb.2_Missense_Mutation_p.A200T|ZNF323_uc010jrb.2_Missense_Mutation_p.A200T|ZNF323_uc003nlc.2_Missense_Mutation_p.A359T	NM_001135216	NP_001128688	Q96LW9	ZN323_HUMAN	zinc finger protein 323	359	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGAATGAAGGCTTTGCCACAC	0.502000													89	93					0	0	0.00361006	0	0
GPX6	257202	broad.mit.edu	37	6	28472261	28472261	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:28472261C>T	uc011dlj.1	-	6	524	c.474G>A	c.(472-474)CCG>CCA	p.P158P	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	158					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	GATCAGAGGTCGGAGGGCAGG	0.443000													21	21					0	0	0.00121646	0	0
CDSN	1041	broad.mit.edu	37	6	31084213	31084213	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:31084213G>A	uc003nsm.1	-	2	1206	c.1179C>T	c.(1177-1179)CCC>CCT	p.P393P	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	393	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						GAGAACTGGAGGGAGAGCAGG	0.642000													4	0					0	0	0.00024832	0	0
HLA-DMB	3109	broad.mit.edu	37	6	32905009	32905009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:32905009C>T	uc003ocl.1	-	3	795	c.562G>A	c.(562-564)GAC>AAC	p.D188N	HLA-DMB_uc003ocj.1_3'UTR|HLA-DMB_uc003ock.1_5'Flank|HLA-DMB_uc010jud.1_Missense_Mutation_p.D57N|HLA-DMB_uc010jue.1_Missense_Mutation_p.D57N|HLA-DMB_uc010juf.1_Missense_Mutation_p.D57N|HLA-DMB_uc011dql.1_Missense_Mutation_p.D188N	NM_002118	NP_002109	P28068	DMB_HUMAN	major histocompatibility complex, class II, DM	188	Lumenal (Potential).|Ig-like C1-type.|Beta-2.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex					0						GTGTAAGTGTCCCCGTAAGAG	0.552000													32	39					0	0	0.00178596	0	0
HLA-DPB1	3115	broad.mit.edu	37	6	33052914	33052914	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:33052914C>T	uc003ocu.1	+	3	611	c.552C>T	c.(550-552)ATC>ATT	p.I184I	HLA-DPB1_uc011dqo.1_RNA|HLA-DPB1_uc011dqp.1_Silent_p.I183I|HLA-DPB1_uc011dqq.1_Silent_p.I80I	NM_002121	NP_002112	P04440	DPB1_HUMAN	major histocompatibility complex, class II, DP	184	Beta-2.|Ig-like C1-type.|Extracellular (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex				ovary(1)	1						CCTTCCAGATCCTGGTGATGC	0.562000													40	45					0	0	0.00128727	0	0
MAPK13	5603	broad.mit.edu	37	6	36107085	36107085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:36107085G>A	uc003ols.2	+	12	1131	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K	MAPK13_uc003olt.2_RNA	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	345					cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						CATCTACAAGGAGATTGTGAA	0.567000													29	35					0	0	0.001512	0	0
FGD2	221472	broad.mit.edu	37	6	36981496	36981496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:36981496G>A	uc010jwp.1	+	5	810	c.639G>A	c.(637-639)TGG>TGA	p.W213*	FGD2_uc003ong.2_5'UTR|FGD2_uc011dtv.1_5'UTR|FGD2_uc003oni.1_Nonsense_Mutation_p.W19*	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	213	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						TGGCCACCTGGACCGACAAGT	0.597000													9	18					0	0	0.000442599	0	0
DNAH8	1769	broad.mit.edu	37	6	38980370	38980370	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:38980370G>A	uc003ooe.1	+	89	13620	c.13020G>A	c.(13018-13020)GGG>GGA	p.G4340G		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TATTTGAAGGGAGGCCTAATG	0.428000													72	103					0	0	0.00361006	0	0
TREM1	54210	broad.mit.edu	37	6	41248754	41248754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:41248754C>T	uc003oqf.1	-	3	608	c.544G>A	c.(544-546)GAT>AAT	p.D182N	TREM1_uc003oqg.1_Intron	NM_018643	NP_061113	Q9NP99	TREM1_HUMAN	triggering receptor expressed on myeloid cells 1	182	Extracellular (Potential).				blood coagulation|humoral immune response|intracellular signal transduction|leukocyte migration	extracellular region|integral to membrane|intracellular|plasma membrane	receptor activity			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)				Glutathione(DB00143)	GTGGAGACATCGGCAGTTGAC	0.512000													23	33					0	0	0.00278032	0	0
PGK2	5232	broad.mit.edu	37	6	49754589	49754589	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:49754589C>T	uc003ozu.2	-	1	419	c.312G>A	c.(310-312)GTG>GTA	p.V104V		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	104					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AGGCTTTCTCCACTTCTGCGC	0.527000													47	53					0	0	0.00361006	0	0
GFRAL	389400	broad.mit.edu	37	6	55192369	55192369	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:55192369T>G	uc003pcm.1	+	1	103	c.17T>G	c.(16-18)TTC>TGC	p.F6C		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	6						integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GTGTTTATTTTCTTGGGTAAG	0.368000													41	51					0	0	0.00361006	0	0
PHF3	23469	broad.mit.edu	37	6	64422811	64422811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:64422811C>T	uc003pep.1	+	15	5353	c.5327C>T	c.(5326-5328)CCT>CTT	p.P1776L	PHF3_uc003pen.2_Missense_Mutation_p.P1688L|PHF3_uc011dxs.1_Missense_Mutation_p.P1045L	NM_015153	NP_055968	Q92576	PHF3_HUMAN	PHD finger protein 3	1776					multicellular organismal development|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	all_cancers(3;0.0241)|all_epithelial(2;0.00306)|Lung NSC(77;0.121)		LUSC - Lung squamous cell carcinoma(74;0.0644)|Lung(124;0.148)			TCAGAATTTCCTTCTAAAAGC	0.428000													32	39					0	0	0.00178596	0	0
FILIP1	27145	broad.mit.edu	37	6	76022865	76022865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:76022865C>T	uc003pia.2	-	5	3056	c.2683G>A	c.(2683-2685)GGG>AGG	p.G895R	FILIP1_uc003phy.1_Missense_Mutation_p.G895R|FILIP1_uc003phz.2_Missense_Mutation_p.G796R|FILIP1_uc010kbe.2_Missense_Mutation_p.G898R|FILIP1_uc003pib.1_Missense_Mutation_p.G647R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	895										skin(3)|ovary(1)	4						CCTGGGTGCCCTGGACTGGAA	0.532000													39	60					0	0	0.00128727	0	0
KLHL32	114792	broad.mit.edu	37	6	97562260	97562260	+	Missense_Mutation	SNP	G	A	A	rs150244885		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:97562260G>A	uc010kcm.1	+	7	1701	c.1229G>A	c.(1228-1230)CGC>CAC	p.R410H	KLHL32_uc003poy.2_Missense_Mutation_p.R410H|KLHL32_uc011ead.1_Missense_Mutation_p.R374H|KLHL32_uc003poz.2_Intron|KLHL32_uc011eae.1_Missense_Mutation_p.R341H|KLHL32_uc003ppa.2_Intron	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	410	Kelch 3.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		AATGAACTGCGCCAGGTTCTG	0.498000													20	26					0	0	0.00152264	0	0
ROS1	6098	broad.mit.edu	37	6	117622160	117622160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:117622160C>T	uc003pxp.1	-	42	6909	c.6710G>A	c.(6709-6711)GGA>GAA	p.G2237E	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2237	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ATTTATGACTCCACTGTTGTT	0.328000			T	GOPC|ROS1	glioblastoma|NSCLC								37	24					0	0	0.00195071	0	0
TRDN	10345	broad.mit.edu	37	6	123539823	123539823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:123539823G>A	uc003pzj.1	-	41	2135	c.2113C>T	c.(2113-2115)CCT>TCT	p.P705S	TRDN_uc010kem.1_Missense_Mutation_p.P206S	NM_006073	NP_006064	Q13061	TRDN_HUMAN	triadin	705	Lumenal.				muscle contraction	integral to membrane|plasma membrane|sarcoplasmic reticulum membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.184)		GGAGTGAAAGGAAACTGAAAT	0.458000													13	13					0	0	0.00136819	0	0
STL	7955	broad.mit.edu	37	6	125232280	125232280	+	RNA	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:125232280C>T	uc003pzq.2	-	7		c.2454G>A				NR_026876				Homo sapiens mRNA; cDNA DKFZp451I132 (from clone DKFZp451I132).												0						TTTCCTGAACCTTTGCTCCTG	0.343000			T	ETV6	B-ALL								9	6					0	0	0.000274275	0	0
C6orf174	387104	broad.mit.edu	37	6	127796803	127796803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:127796803G>A	uc003qbd.2	-	6	3233	c.2368C>T	c.(2368-2370)CGC>TGC	p.R790C	C6orf174_uc003qbc.2_5'UTR	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	790						integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		GTGAGGCAGCGGATGTTGCGC	0.701000													21	21					0	0	0.00229938	0	0
THEMIS	387357	broad.mit.edu	37	6	128135017	128135017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:128135017C>T	uc003qbi.2	-	5	1088	c.769G>A	c.(769-771)GAT>AAT	p.D257N	THEMIS_uc010kfa.2_Missense_Mutation_p.D160N|THEMIS_uc011ebt.1_Missense_Mutation_p.D257N|THEMIS_uc010kfb.2_Missense_Mutation_p.D222N	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	257	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCGTAAGAATCAGTGATGTCT	0.353000													57	80					0	0	0.00361006	0	0
ZC3H12D	340152	broad.mit.edu	37	6	149795658	149795658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:149795658C>T	uc003qmn.1	-	1	92	c.22G>A	c.(22-24)GAA>AAA	p.E8K	PPIL4_uc010kic.2_Intron|ZC3H12D_uc003qmm.2_Missense_Mutation_p.E8K|ZC3H12D_uc010kid.2_Missense_Mutation_p.E8K	NM_207360	NP_997243	A2A288	ZC12D_HUMAN	zinc finger CCCH-type containing 12D	8						cytoplasm|nucleus	endonuclease activity|nucleic acid binding|zinc ion binding				0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;1.23e-11)|GBM - Glioblastoma multiforme(68;0.0921)		TGGAAGAATTCCATCTTGCTG	0.622000													7	7					0	0	0.000274275	0	0
MYCT1	80177	broad.mit.edu	37	6	153043010	153043010	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:153043010G>A	uc003qpd.3	+	2	338	c.330G>A	c.(328-330)AGG>AGA	p.R110R	MYCT1_uc010kjc.1_Intron|MYCT1_uc003qpc.3_Silent_p.R110R	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	110	Bipartite nuclear localization signal (Potential).					nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		GTTCAAGCAGGAGATCTAGGT	0.517000													39	54					0	0	0.00170553	0	0
TTLL2	83887	broad.mit.edu	37	6	167755012	167755012	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:167755012C>T	uc003qvs.1	+	3	1712	c.1624C>T	c.(1624-1626)CTG>TTG	p.L542L	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	542					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		CCCGTGTGTCCTGTCAGACCG	0.537000													31	44					0	0	0.0024448	0	0
KIF25	3834	broad.mit.edu	37	6	168445645	168445645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:168445645C>T	uc003qwk.1	+	9	1386	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	KIF25_uc003qwl.1_Missense_Mutation_p.S323F	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	375					microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CCGCCCAGCTCCCAAACGGAG	0.547000													33	34					0	0	0.00327116	0	0
MICALL2	79778	broad.mit.edu	37	7	1474304	1474304	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:1474304G>A	uc003skj.3	-	17	2790	c.2643C>T	c.(2641-2643)CTC>CTT	p.L881L	MICALL2_uc003skh.3_Missense_Mutation_p.P89S|MICALL2_uc003ski.3_Missense_Mutation_p.P367S	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	881						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		TCTTCCTCTGGAGGCCTAGGG	0.617000													55	32					0	0	0.00361006	0	0
C7orf27	221927	broad.mit.edu	37	7	2583254	2583254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:2583254G>A	uc003smi.2	-	5	815	c.773C>T	c.(772-774)TCG>TTG	p.S258L	C7orf27_uc003smh.3_5'Flank|C7orf27_uc003smj.1_Missense_Mutation_p.S258L	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	258					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		GTCCACGAACGAGTGTGCGGC	0.687000													54	37					0	0	0.00361006	0	0
SDK1	221935	broad.mit.edu	37	7	4056966	4056966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:4056966G>A	uc003smx.2	+	17	2723	c.2584G>A	c.(2584-2586)GAG>AAG	p.E862K	SDK1_uc010kso.2_Missense_Mutation_p.E138K	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	862	Fibronectin type-III 2.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		GGCAGTGACCGAGTACACCTT	0.562000													22	32					0	0	0.000720815	0	0
TSPAN13	27075	broad.mit.edu	37	7	16816728	16816729	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:16816728_16816729CC>TT	uc003stq.2	+	3	535_536	c.293_294CC>TT	c.(292-294)GCC>GTT	p.A98V		NM_014399	NP_055214	O95857	TSN13_HUMAN	tetraspan NET-6	98	Extracellular (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		GCTTGTTTAGCCCTGAACCAGG	0.312000													52	52					0	0	6.4e-05	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066929	18066929	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:18066929G>A	uc003stz.2	-	1	558	c.477C>T	c.(475-477)ATC>ATT	p.I159I		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	159					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					TCCACTCAGGGATATTCTCCC	0.453000													31	72					0	0	0.00283554	0	0
ITGB8	3696	broad.mit.edu	37	7	20418903	20418903	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:20418903G>A	uc003suu.2	+	4	1323	c.618G>A	c.(616-618)AGG>AGA	p.R206R	ITGB8_uc011jyh.1_Silent_p.R71R|ITGB8_uc003sut.2_Silent_p.R206R	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	206	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						ACCCCGAAAGGATTCATAATC	0.338000													39	24					0	0	0.00195071	0	0
HOXA1	3198	broad.mit.edu	37	7	27135280	27135280	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:27135280C>T	uc003sye.2	-	1	346	c.252G>A	c.(250-252)GGG>GGA	p.G84G	HOXA1_uc003syd.2_Silent_p.G84G|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	84						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						CCCCCAGGTTCCCGGAAGTCT	0.488000											OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	52	21					0	0	0.00361006	0	0
PDE1C	5137	broad.mit.edu	37	7	32209531	32209531	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:32209531G>A	uc003tco.1	-	3	768	c.174C>T	c.(172-174)ATC>ATT	p.I58I		NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	Error:Variant_position_missing_in_Q14123_after_alignment					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TGAGCCCATCGATGAGGGAGT	0.532000													123	72					0	0	0.00361006	0	0
AMPH	273	broad.mit.edu	37	7	38574543	38574543	+	Silent	SNP	G	A	A	rs140832560	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:38574543G>A	uc003tgu.2	-	2	207	c.138C>T	c.(136-138)TTC>TTT	p.F46F	AMPH_uc003tgv.2_Silent_p.F46F	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	46	BAR.|Potential.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						CTTGCCGTTTGAAGTTCTGGA	0.338000													26	62					0	0	0.001512	0	0
MYO1G	64005	broad.mit.edu	37	7	45016598	45016598	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:45016598G>A	uc003tmh.2	-	2	312	c.168C>T	c.(166-168)CCC>CCT	p.P56P	MYO1G_uc003tmg.2_5'Flank|MYO1G_uc010kym.2_Intron|MYO1G_uc003tmi.1_5'UTR|MYO1G_uc003tmj.2_5'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	56	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						GCCCATACAGGGGCAGCTCCT	0.622000													31	23					0	0	0.00428921	0	0
PKD1L1	168507	broad.mit.edu	37	7	47968881	47968882	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:47968881_47968882CC>AA	uc003tny.1	-	7	979_980	c.979_980GG>TT	c.(979-981)GGG>TTG	p.G327L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	327	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGAACTGTCCCCGAAATCCATC	0.510000													8	277					0	0	6.4e-05	0	0
ABCA13	154664	broad.mit.edu	37	7	48315402	48315402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:48315402G>A	uc003toq.2	+	17	6164	c.6139G>A	c.(6139-6141)GAA>AAA	p.E2047K	ABCA13_uc010kyr.2_Missense_Mutation_p.E1550K	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2047					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AAGTTTTATTGAAAAAAGTGA	0.358000													24	11					0	0	0.000878237	0	0
AUTS2	26053	broad.mit.edu	37	7	69364456	69364456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:69364456G>A	uc003tvw.3	+	2	1237	c.494G>A	c.(493-495)AGA>AAA	p.R165K	AUTS2_uc003tvv.3_Missense_Mutation_p.R165K|AUTS2_uc003tvx.3_Missense_Mutation_p.R165K	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	165										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CTTGGGAAGAGAAAGAAAATG	0.517000													64	38					0	0	0.00361006	0	0
WBSCR17	64409	broad.mit.edu	37	7	70886063	70886063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:70886063G>A	uc003tvy.2	+	5	934	c.934G>A	c.(934-936)GAC>AAC	p.D312N	WBSCR17_uc003tvz.2_Missense_Mutation_p.D11N	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	312	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				AGACTGGTGGGACGCCGGAGA	0.592000													26	49					0	0	0.00106085	0	0
UPK3B	80761	broad.mit.edu	37	7	76144447	76144447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:76144447C>T	uc003ufq.2	+	4	1067	c.842C>T	c.(841-843)CCC>CTC	p.P281L	UPK3B_uc003ufo.2_Missense_Mutation_p.P253S|UPK3B_uc010ldk.1_Missense_Mutation_p.P226L	NM_030570	NP_085047	Q9BT76	UPK3B_HUMAN	uroplakin 3B isoform a	281	Cytoplasmic (Potential).				negative regulation of gene expression	integral to membrane|plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(862;0.204)				CCACCACATCCCACCCAGAGA	0.706000													6	8					0	0	0.00116845	0	0
PION	54103	broad.mit.edu	37	7	77006657	77006657	+	Silent	SNP	G	A	A	rs138204887	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:77006657G>A	uc003ugf.2	-	9	706	c.627C>T	c.(625-627)TTC>TTT	p.F209F	PION_uc003ugg.1_5'UTR	NM_017439	NP_059135	A4D1B5	GSAP_HUMAN	pigeon homolog	209					beta-amyloid formation|regulation of proteolysis	trans-Golgi network	beta-amyloid binding			central_nervous_system(1)	1						GAGCCCAAACGAAATCCTCAG	0.303000													77	191					0	0	0.00361006	0	0
PCLO	27445	broad.mit.edu	37	7	82390007	82390007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:82390007G>A	uc003uhx.2	-	24	15525	c.15236C>T	c.(15235-15237)TCG>TTG	p.S5079L		NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	5002	C2 2.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCATTAAACGAAGGCTCTCG	0.323000													43	71					0	0	0.00361006	0	0
PCLO	27445	broad.mit.edu	37	7	82457228	82457228	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:82457228C>T	uc003uhx.2	-	17	14593	c.14304G>A	c.(14302-14304)TGG>TGA	p.W4768*	PCLO_uc003uhv.2_Nonsense_Mutation_p.W4768*|PCLO_uc003uht.1_Nonsense_Mutation_p.W210*|PCLO_uc003uhu.1_Nonsense_Mutation_p.W189*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4630	C2 1.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTGTTTGATTCCACTCAGGAT	0.333000													20	18					0	0	0.00278032	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86521099	86521099	+	Missense_Mutation	SNP	C	T	T	rs117082571	by1000genomes	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:86521099C>T	uc011kha.1	-	21	3156	c.2971G>A	c.(2971-2973)GAA>AAA	p.E991K	KIAA1324L_uc003uif.1_Missense_Mutation_p.E751K|KIAA1324L_uc011kgz.1_Missense_Mutation_p.E877K|KIAA1324L_uc003uie.2_Missense_Mutation_p.E824K	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	991	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					TATACAACTTCCTCTTCATTA	0.378000													53	31					0	0	0.00361006	0	0
COL1A2	1278	broad.mit.edu	37	7	94054461	94054461	+	Silent	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:94054461T>C	uc003ung.1	+	42	3177	c.2706T>C	c.(2704-2706)CCT>CCC	p.P902P	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	902					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TTGCCGGCCCTCCTGGGGCCC	0.532000										HNSCC(75;0.22)			40	39					0	0	0.00361006	0	0
MUC17	140453	broad.mit.edu	37	7	100683911	100683911	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:100683911G>T	uc003uxp.1	+	3	9267	c.9214G>T	c.(9214-9216)GAC>TAC	p.D3072Y	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3072	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|49.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTGTTGACTCCAACAG	0.483000													262	125					7.13028e-133	1.99088e-132	0.00361006	1	0
PRKRIP1	79706	broad.mit.edu	37	7	102038085	102038085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:102038085C>T	uc003uzh.2	+	2	200	c.145C>T	c.(145-147)CCA>TCA	p.P49S	PRKRIP1_uc003uzf.2_5'UTR|PRKRIP1_uc003uzg.2_5'UTR|PRKRIP1_uc011kkq.1_Intron|PRKRIP1_uc011kkr.1_Missense_Mutation_p.P49S	NM_024653	NP_078929	Q9H875	PKRI1_HUMAN	PRKR interacting protein 1 (IL11 inducible)	49	Interaction with EIF2AK2 (By similarity).					nucleolus				ovary(1)	1						AGTTCCAATTCCAGAGAAAAT	0.313000													33	64					0	0	0.00428921	0	0
RELN	5649	broad.mit.edu	37	7	103191669	103191669	+	Silent	SNP	C	T	T	rs116750302	by1000genomes	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:103191669C>T	uc003vca.2	-	41	6307	c.6147G>A	c.(6145-6147)GCG>GCA	p.A2049A	RELN_uc010liz.2_Silent_p.A2049A	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2049	BNR 9.				axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		GGTGCCAGGTCGCCCCGAAGT	0.547000													33	16					0	0	0.00170553	0	0
CFTR	1080	broad.mit.edu	37	7	117180348	117180348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:117180348C>T	uc003vjd.2	+	8	1196	c.1064C>T	c.(1063-1065)CCC>CTC	p.P355L	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	355	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding	p.P355S(1)		central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CGGCAATTTCCCTGGGCTGTA	0.403000									Cystic_Fibrosis				43	90					0	0	0.00361006	0	0
C7orf58	79974	broad.mit.edu	37	7	120739987	120739987	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:120739987A>G	uc003vjq.3	+	7	1204	c.757A>G	c.(757-759)ACG>GCG	p.T253A	C7orf58_uc003vjr.1_Missense_Mutation_p.T253A|C7orf58_uc003vjs.3_Missense_Mutation_p.T253A|C7orf58_uc003vjt.3_Missense_Mutation_p.T33A|C7orf58_uc010lkk.1_Missense_Mutation_p.T33A	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	253						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TAGGAATGAAACGACAGTCCT	0.378000													37	22					0	0	0.00195071	0	0
SLC13A1	6561	broad.mit.edu	37	7	122839966	122839966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:122839966C>T	uc003vkm.2	-	1	60	c.35G>A	c.(34-36)CGA>CAA	p.R12Q	SLC13A1_uc010lks.2_5'UTR	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	12						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	GAAGAGAAATCGGCGATAAAC	0.438000													31	51					0	0	0.00428921	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192399	132192399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:132192399C>T	uc003vra.3	-	2	1283	c.1054G>A	c.(1054-1056)GAG>AAG	p.E352K	PLXNA4_uc003vrc.2_Missense_Mutation_p.E352K|PLXNA4_uc003vrb.2_Missense_Mutation_p.E352K	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	352	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						AGGGCCGACTCATCCAGGGAT	0.577000													47	25					0	0	0.00361006	0	0
CHRM2	1129	broad.mit.edu	37	7	136700761	136700761	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:136700761G>A	uc003vtf.1	+	4	1772	c.1149G>A	c.(1147-1149)AAG>AAA	p.K383K	CHRM2_uc003vtg.1_Silent_p.K383K|CHRM2_uc003vtj.1_Silent_p.K383K|CHRM2_uc003vtk.1_Silent_p.K383K|CHRM2_uc003vtl.1_Silent_p.K383K|CHRM2_uc003vtm.1_Silent_p.K383K|CHRM2_uc003vti.1_Silent_p.K383K|CHRM2_uc003vto.1_Silent_p.K383K|CHRM2_uc003vtn.1_Silent_p.K383K|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	383	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CCCGGGAAAAGAAAGTCACCA	0.458000													74	41					0	0	0.00361006	0	0
DGKI	9162	broad.mit.edu	37	7	137237234	137237234	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:137237234G>A	uc003vtt.2	-	20	2029	c.2028C>T	c.(2026-2028)CCC>CCT	p.P676P	DGKI_uc003vtu.2_Silent_p.P376P	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	676					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						CCACTTGCATGGGGATGGATT	0.507000													131	80					0	0	0.00361006	0	0
TRIM24	8805	broad.mit.edu	37	7	138239496	138239496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:138239496C>T	uc003vuc.2	+	9	1530	c.1315C>T	c.(1315-1317)CCT>TCT	p.P439S	TRIM24_uc003vub.2_Missense_Mutation_p.P439S	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	439					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						TAAGCAGAATCCTGTCGTGGA	0.418000													90	50					0	0	0.00361006	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				61	30					0	0	0.00361006	0	0
MGAM	8972	broad.mit.edu	37	7	141754626	141754626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:141754626C>T	uc003vwy.2	+	27	3286	c.3232C>T	c.(3232-3234)CCT>TCT	p.P1078S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1078	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATCCAGCACCCCTGAGGGTCA	0.448000													117	63					0	0	0.00361006	0	0
MGAM	8972	broad.mit.edu	37	7	141758123	141758123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:141758123C>T	uc003vwy.2	+	31	3868	c.3814C>T	c.(3814-3816)CCT>TCT	p.P1272S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1272	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGCCCAGATCCCTTATGTACG	0.478000													153	92					0	0	0.00361006	0	0
OR2A12	346525	broad.mit.edu	37	7	143793010	143793010	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:143793010G>A	uc011kty.1	+	1	810	c.810G>A	c.(808-810)AGG>AGA	p.R270R		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	270	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					AAGAACGGAGGAAGATCCTTT	0.527000													106	234					0	0	0.00361006	0	0
ZNF786	136051	broad.mit.edu	37	7	148768085	148768085	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:148768085G>A	uc003wfh.2	-	4	1916	c.1779C>T	c.(1777-1779)TTC>TTT	p.F593F	ZNF786_uc011kuk.1_Silent_p.F556F|ZNF786_uc003wfi.2_Silent_p.F507F	NM_152411	NP_689624	Q8N393	ZN786_HUMAN	zinc finger protein 786	593	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|skin(1)	4	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CTGGGCACTGGAAGGGTCTCT	0.647000													21	7					0	0	0.00188189	0	0
RARRES2	5919	broad.mit.edu	37	7	150037221	150037221	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:150037221T>A	uc003wha.2	-	3	364	c.247A>T	c.(247-249)AAG>TAG	p.K83*	RARRES2_uc010lpp.1_Nonsense_Mutation_p.K83*	NM_002889	NP_002880	Q99969	RARR2_HUMAN	chemerin preproprotein	83					embryonic digestive tract development|in utero embryonic development|positive regulation of macrophage chemotaxis|retinoid metabolic process	extracellular matrix	receptor binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			TCGGGTTTCTTCCAGTCCCTC	0.572000													374	219					0	0	0.00361006	0	0
PTPRN2	5799	broad.mit.edu	37	7	158109571	158109571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr7:158109571C>T	uc003wno.2	-	3	338	c.217G>A	c.(217-219)GAG>AAG	p.E73K	PTPRN2_uc003wnp.2_Missense_Mutation_p.E56K|PTPRN2_uc003wnq.2_Missense_Mutation_p.E73K|PTPRN2_uc003wnr.2_Intron|PTPRN2_uc011kwa.1_Missense_Mutation_p.E96K	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	73	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGCGACACCTCGTAGCGGTAA	0.607000													31	10					0	0	0.00111076	0	0
USP17L2	377630	broad.mit.edu	37	8	11994741	11994741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:11994741C>T	uc003wvc.1	-	1	1529	c.1529G>A	c.(1528-1530)GGG>GAG	p.G510E	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	510					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						CCTGGTCCTCCCTTGCAGAGA	0.552000													28	63					0	0	0.00178596	0	0
SLC18A1	6570	broad.mit.edu	37	8	20004826	20004826	+	Silent	SNP	G	A	A	rs17215766	byFrequency	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:20004826G>A	uc011kyq.1	-	16	1878	c.1407C>T	c.(1405-1407)ATC>ATT	p.I469I	SLC18A1_uc003wzl.2_Silent_p.I256I|SLC18A1_uc003wzm.2_Silent_p.I469I|SLC18A1_uc011kyr.1_Intron|SLC18A1_uc003wzn.2_Silent_p.I437I|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Silent_p.I437I	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	469	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		GAGCATAGACGATGTTGATGA	0.512000													15	21					0	0	0.00400662	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24259437	24259437	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:24259437C>T	uc003xdz.2	+	12	1372	c.1152C>T	c.(1150-1152)TTC>TTT	p.F384F	ADAMDEC1_uc010lub.2_Silent_p.F305F|ADAMDEC1_uc011lab.1_Silent_p.F305F	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	384	Peptidase M12B.				integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GTTCAAAATTCCCAAAGGATT	0.363000													22	32					0	0	0.000720815	0	0
DUSP26	78986	broad.mit.edu	37	8	33449605	33449605	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:33449605T>G	uc003xjp.2	-	4	895	c.562A>C	c.(562-564)ATC>CTC	p.I188L	DUSP26_uc003xjq.2_Missense_Mutation_p.I188L	NM_024025	NP_076930	Q9BV47	DUS26_HUMAN	dual specificity phosphatase 26	188	Tyrosine-protein phosphatase.					Golgi apparatus|nucleus	protein binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0				KIRC - Kidney renal clear cell carcinoma(67;0.0918)|Kidney(114;0.111)		TTGGGGATGATGCCTCGGTGG	0.647000													14	24					0	0	0.00400662	0	0
ADAM18	8749	broad.mit.edu	37	8	39495113	39495113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:39495113G>A	uc003xni.2	+	9	718	c.718G>A	c.(718-720)GAA>AAA	p.E240K	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.E216K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	240	Peptidase M12B.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GTGGTCAAATGAAAACCAGAT	0.358000													27	23					0	0	0.000878237	0	0
ADAM2	2515	broad.mit.edu	37	8	39604026	39604026	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:39604026C>T	uc003xnj.2	-	19	2214	c.2139G>A	c.(2137-2139)AGG>AGA	p.R713R	ADAM2_uc003xnk.2_Silent_p.R694R|ADAM2_uc011lck.1_Silent_p.R650R|ADAM2_uc003xnl.2_Silent_p.R557R	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	713	Cytoplasmic (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		TCCATTTTTTCCTTTGGAAAT	0.284000													45	80					0	0	0.00361006	0	0
PRKDC	5591	broad.mit.edu	37	8	48740752	48740752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:48740752G>A	uc003xqi.2	-	63	8611	c.8554C>T	c.(8554-8556)CCA>TCA	p.P2852S	PRKDC_uc003xqj.2_Missense_Mutation_p.P2852S|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2852	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				ACAAAGGGTGGAAAGAAAGAG	0.363000								NHEJ					16	28					0	0	0.000566183	0	0
RP1	6101	broad.mit.edu	37	8	55540733	55540733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:55540733G>A	uc003xsd.1	+	4	4439	c.4291G>A	c.(4291-4293)GAA>AAA	p.E1431K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1431					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GTTTCAGGATGAAAATGCATA	0.373000													12	27					0	0	0.00244969	0	0
PREX2	80243	broad.mit.edu	37	8	69046338	69046338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:69046338C>T	uc003xxv.1	+	32	3838	c.3811C>T	c.(3811-3813)CTT>TTT	p.L1271F		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1271					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						CTGCCAGACTCTTGTGGCCAC	0.468000													36	37					0	0	0.00128727	0	0
KCNB2	9312	broad.mit.edu	37	8	73848366	73848366	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:73848366G>A	uc003xzb.2	+	3	1364	c.776G>A	c.(775-777)TGG>TAG	p.W259*		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	259	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CCAAATAAATGGAAGTTCTTC	0.458000													42	43					0	0	0.00195071	0	0
KCNB2	9312	broad.mit.edu	37	8	73849983	73849983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:73849983C>T	uc003xzb.2	+	3	2981	c.2393C>T	c.(2392-2394)TCA>TTA	p.S798L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	798	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CCTTTCTCTTCAAGAGAGAGG	0.552000													15	29					0	0	0.000566183	0	0
PSKH2	85481	broad.mit.edu	37	8	87060806	87060806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:87060806G>A	uc011lfy.1	-	3	1043	c.1043C>T	c.(1042-1044)TCT>TTT	p.S348F		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	348							ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			AGGACTCTGAGAGTGGGGAGA	0.507000													38	39					0	0	0.00111076	0	0
ATP6V0D2	245972	broad.mit.edu	37	8	87165160	87165160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:87165160C>T	uc003ydp.1	+	8	1076	c.1007C>T	c.(1006-1008)TCA>TTA	p.S336L		NM_152565	NP_689778	Q8N8Y2	VA0D2_HUMAN	ATPase, H+ transporting, lysosomal 38kDa, V0	336					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	apical plasma membrane|endosome membrane|proton-transporting V-type ATPase, V0 domain|vacuolar proton-transporting V-type ATPase complex	hydrogen ion transmembrane transporter activity|protein binding				0						GAATGTATTTCACAGAGGCAT	0.333000													25	32					0	0	0.00278032	0	0
DPYS	1807	broad.mit.edu	37	8	105463604	105463604	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:105463604A>T	uc003yly.3	-	2	422	c.293T>A	c.(292-294)ATT>AAT	p.I98N		NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	98					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GAAATCAATAATCATGGTGGT	0.453000													25	27					0	0	0.00127121	0	0
TMEM74	157753	broad.mit.edu	37	8	109797321	109797321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:109797321G>A	uc003ymy.1	-	2	112	c.7C>T	c.(7-9)CTC>TTC	p.L3F	TMEM74_uc003ymx.2_Intron	NM_153015	NP_694560	Q96NL1	TMM74_HUMAN	transmembrane protein 74	3					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(57;3.08e-10)			AGGTAGTGGAGCTCCATGAGA	0.527000													19	19					0	0	0.00152264	0	0
FAM135B	51059	broad.mit.edu	37	8	139144881	139144881	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:139144881G>A	uc003yuy.2	-	20	4347	c.4176C>T	c.(4174-4176)TTC>TTT	p.F1392F	FAM135B_uc003yux.2_Silent_p.F1293F|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1392								p.F1392S(1)		ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			ACTTCTCCAGGAAGAGTTCTG	0.527000										HNSCC(54;0.14)			85	112					0	0	0.00361006	0	0
FAM83H	286077	broad.mit.edu	37	8	144812588	144812588	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:144812588G>A	uc003yzk.2	-	2	234	c.165C>T	c.(163-165)TTC>TTT	p.F55F	FAM83H_uc010mfk.1_5'Flank	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	55					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CAGGGCACAGGAAGTCTGGTG	0.622000													28	35					0	0	0.00127121	0	0
EPPK1	83481	broad.mit.edu	37	8	144940344	144940344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:144940344C>T	uc003zaa.1	-	2	15101	c.15088G>A	c.(15088-15090)GAC>AAC	p.D5030N		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5030	Plectin 64.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TAGGCCACGTCCACGGGCACG	0.692000													13	374					0	0	0.00400662	0	0
EPPK1	83481	broad.mit.edu	37	8	144940451	144940451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:144940451G>A	uc003zaa.1	-	2	14994	c.14981C>T	c.(14980-14982)GCC>GTC	p.A4994V		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4994	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CTTCTGCATGGCCTGGAAGAG	0.697000													13	266					0	0	0.000566183	0	0
EPPK1	83481	broad.mit.edu	37	8	144944881	144944881	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:144944881C>T	uc003zaa.1	-	1	2554	c.2541G>A	c.(2539-2541)AGG>AGA	p.R847R		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	847						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCAGCTGCCTCCTGCGGCCCT	0.642000													11	9					0	0	0.00136819	0	0
PTPRD	5789	broad.mit.edu	37	9	8341932	8341932	+	Silent	SNP	A	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:8341932A>G	uc003zkk.2	-	39	5419	c.4708T>C	c.(4708-4710)TTA>CTA	p.L1570L	PTPRD_uc003zkp.2_Silent_p.L1164L|PTPRD_uc003zkq.2_Silent_p.L1163L|PTPRD_uc003zkr.2_Silent_p.L1154L|PTPRD_uc003zks.2_Silent_p.L1163L|PTPRD_uc003zkl.2_Silent_p.L1561L|PTPRD_uc003zkm.2_Silent_p.L1557L|PTPRD_uc003zkn.2_Silent_p.L1159L|PTPRD_uc003zko.2_Silent_p.L1160L	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1570	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATTCTTTCTAACATGGCATCT	0.378000										TSP Lung(15;0.13)			24	2					0	0	0.00278032	0	0
IFNA17	3451	broad.mit.edu	37	9	21227840	21227840	+	Silent	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:21227840T>C	uc003zos.1	-	1	382	c.333A>G	c.(331-333)GAA>GAG	p.E111E	IFNA14_uc003zoo.1_Intron	NM_021268	NP_067091	P01571	IFN17_HUMAN	interferon, alpha 17 precursor	111					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				Lung(24;2.13e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		GCTGGTAAAGTTCAGTGGAAA	0.488000													55	14					0	0	0.00361006	0	0
GALT	2592	broad.mit.edu	37	9	34648802	34648802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:34648802C>T	uc003zve.2	+	8	798	c.731C>T	c.(730-732)CCC>CTC	p.P244L	GALT_uc003zvf.2_Missense_Mutation_p.P135L|GALT_uc003zvg.2_Missense_Mutation_p.P116L|GALT_uc003zvh.2_Missense_Mutation_p.P196L|GALT_uc011lop.1_Missense_Mutation_p.P196L|IL11RA_uc003zvi.2_5'Flank	NM_000155	NP_000146	P07902	GALT_HUMAN	galactose-1-phosphate uridylyltransferase	244					galactose catabolic process	cytosol	UDP-glucose:hexose-1-phosphate uridylyltransferase activity|zinc ion binding				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		GTACTGGTCCCCTTCTGGGCA	0.582000									Galactosemia				65	7					0	0	0.00361006	0	0
CD72	971	broad.mit.edu	37	9	35610665	35610665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:35610665G>A	uc003zxb.2	-	8	1160	c.1036C>T	c.(1036-1038)CTT>TTT	p.L346F	CD72_uc003zxc.1_Missense_Mutation_p.L131F|CD72_uc010mkt.1_Missense_Mutation_p.L131F	NM_001782	NP_001773	P21854	CD72_HUMAN	CD72 molecule	346	C-type lectin.|Extracellular (Potential).				axon guidance|cell adhesion	integral to plasma membrane	receptor binding|sugar binding|transmembrane receptor activity				0			Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			ATGTAGGGAAGAGAACTTCTA	0.448000													24	2					0	0	0.00229938	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39177402	39177402	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:39177402G>A	uc004abi.2	-	6	1079	c.840C>T	c.(838-840)CTC>CTT	p.L280L	CNTNAP3_uc004abj.2_Silent_p.L280L|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Silent_p.L280L|CNTNAP3_uc011lqs.1_Silent_p.L280L|CNTNAP3_uc004abl.1_Silent_p.L192L	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	280	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CCTGCGTGTCGAGGAGCTCGA	0.498000													42	6					0	0	0.00222228	0	0
NOL8	55035	broad.mit.edu	37	9	95062242	95062242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:95062242G>A	uc004arv.2	-	14	3569	c.3232C>T	c.(3232-3234)CGT>TGT	p.R1078C	NOL8_uc010mqw.2_RNA|NOL8_uc004arw.2_Missense_Mutation_p.R310C|NOL8_uc011ltw.1_Missense_Mutation_p.R1010C	NM_017948	NP_060418	Q76FK4	NOL8_HUMAN	nucleolar protein 8	1078					DNA replication|positive regulation of cell growth	nucleolus	nucleotide binding|protein binding|RNA binding			ovary(1)	1						TCTTGTAAACGAGGGTCTTCC	0.413000													116	140					0	0	0.00361006	0	0
SMC2	10592	broad.mit.edu	37	9	106901545	106901545	+	Silent	SNP	G	A	A	rs144844202		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:106901545G>A	uc004bbv.2	+	25	3831	c.3543G>A	c.(3541-3543)AAG>AAA	p.K1181K	SMC2_uc004bbw.2_Silent_p.K1181K|SMC2_uc011lvl.1_Silent_p.K1181K|SMC2_uc004bbx.2_Silent_p.K1181K|SMC2_uc004bby.2_RNA	NM_001042551	NP_001036016	O95347	SMC2_HUMAN	structural maintenance of chromosomes 2	1181					cell division|mitotic chromosome condensation|symbiosis, encompassing mutualism through parasitism	condensin complex|cytoplasm|nuclear chromosome	ATP binding|protein heterodimerization activity			ovary(4)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|breast(1)	9						AGATTTCAAAGGAAGCAAAAT	0.343000													18	35					0	0	0.00152264	0	0
TNC	3371	broad.mit.edu	37	9	117853196	117853196	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:117853196C>T	uc004bjj.3	-	2	464	c.102G>A	c.(100-102)CAG>CAA	p.Q34Q	TNC_uc010mvf.2_Silent_p.Q34Q	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	34					cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TCACCCCACTCTGTCGCTTGT	0.562000													21	27					0	0	0.00229938	0	0
PAPPA	5069	broad.mit.edu	37	9	119158837	119158837	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:119158837G>T	uc004bjn.2	+	22	5207	c.4826G>T	c.(4825-4827)CGG>CTG	p.R1609L	PAPPA_uc011lxq.1_Missense_Mutation_p.R984L	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1609					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGTGCTTGTCGGGACCCCCAG	0.517000													69	89					2.0493e-37	5.69961e-37	0.00361006	1	0
ASTN2	23245	broad.mit.edu	37	9	119625875	119625875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:119625875G>A	uc004bjs.1	-	11	2128	c.2027C>T	c.(2026-2028)TCC>TTC	p.S676F	ASTN2_uc004bjr.1_Missense_Mutation_p.S672F|ASTN2_uc004bjt.1_Missense_Mutation_p.S625F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	676	Extracellular (Potential).|EGF-like 2.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						ACATCCCGAGGAATCCACCTG	0.607000													23	34					0	0	0.00395357	0	0
OR1N2	138882	broad.mit.edu	37	9	125316283	125316283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:125316283C>T	uc011lyx.1	+	1	835	c.835C>T	c.(835-837)CCT>TCT	p.P279S		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	279	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GTATTTACTTCCTCCATCAAC	0.463000													43	56					0	0	0.00321405	0	0
OR1B1	347169	broad.mit.edu	37	9	125391601	125391601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:125391601C>T	uc011lyz.1	-	1	214	c.214G>A	c.(214-216)GAC>AAC	p.D72N		NM_001004450	NP_001004450	Q8NGR6	OR1B1_HUMAN	olfactory receptor, family 1, subfamily B,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCCCCATGTCTATCACAGAG	0.532000													18	16					0	0	0.000958276	0	0
PPAPDC3	84814	broad.mit.edu	37	9	134165543	134165543	+	Silent	SNP	T	G	G			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:134165543T>G	uc004cal.2	+	1	463	c.159T>G	c.(157-159)GGT>GGG	p.G53G		NM_032728	NP_116117	Q8NBV4	PPAC3_HUMAN	phosphatidic acid phosphatase type 2 domain	53	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	hydrolase activity			breast(1)	1	all_hematologic(7;0.0119)			OV - Ovarian serous cystadenocarcinoma(145;1.22e-05)|Epithelial(140;0.000173)		CACCTGCTGGTGACGGGGCCA	0.677000													7	7					0	0	0.00198382	0	0
EHMT1	79813	broad.mit.edu	37	9	140728854	140728854	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr9:140728854C>T	uc011mfc.1	+	26	3631	c.3594C>T	c.(3592-3594)TTC>TTT	p.F1198F	EHMT1_uc004coe.2_Silent_p.F103F	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1198	SET.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		TCAGCCGGTTCATCAACCACC	0.662000													10	21					0	0	0.000673444	0	0
SLC25A6	293	broad.mit.edu	37	X	1505546	1505546	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:1505546C>A	uc004cpt.2	-	4	942	c.846G>T	c.(844-846)ATG>ATT	p.M282I	SLC25A6_uc004cpu.2_RNA	NM_001636	NP_001627	P12236	ADT3_HUMAN	adenine nucleotide translocator 3	282	Helical; Name=6; (By similarity).|Solcar 3.				active induction of host immune response by virus|apoptosis|energy reserve metabolic process|regulation of insulin secretion|viral infectious cycle	integral to membrane|mitochondrial inner membrane presequence translocase complex	ATP:ADP antiporter activity|protein binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Clodronate(DB00720)	AGGCGCCCCCCATGCCCCGCA	0.607000													63	76					2.26907e-38	6.32319e-38	0.00361006	1	0
MXRA5	25878	broad.mit.edu	37	X	3261695	3261695	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:3261695G>A	uc004crg.3	-	2	337	c.180C>T	c.(178-180)ATC>ATT	p.I60I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	60	LRR 1.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACCCCAAATTGATTCTTTCCA	0.532000													14	1					0	0	0.00400662	0	0
FAM47A	158724	broad.mit.edu	37	X	34150008	34150008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:34150008G>A	uc004ddg.2	-	1	421	c.388C>T	c.(388-390)CCC>TCC	p.P130S		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	130										ovary(4)|central_nervous_system(1)	5						ATGGCCAAGGGATGCTTGGCC	0.557000													49	3					0	0	0.00361006	0	0
SYTL5	94122	broad.mit.edu	37	X	37979702	37979702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:37979702C>T	uc004ddu.2	+	15	2222	c.1688C>T	c.(1687-1689)CCA>CTA	p.P563L	SYTL5_uc004ddv.2_Missense_Mutation_p.P563L|SYTL5_uc004ddx.2_Missense_Mutation_p.P585L	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	563					intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						CTGATGCTTCCACCAGAACAA	0.433000													54	9					0	0	0.00361006	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83351247	83351247	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:83351247G>A	uc004eej.1	-	20	2003	c.1926C>T	c.(1924-1926)TTC>TTT	p.F642F	RPS6KA6_uc011mqt.1_Silent_p.F642F|RPS6KA6_uc011mqu.1_Silent_p.F539F	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	642	Protein kinase 2.				axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						CACTCAAAGAGAATTTTCCAT	0.348000													37	2					0	0	0.00148497	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449830	105449830	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:105449830G>A	uc004emf.1	+	4	1054	c.405G>A	c.(403-405)CGG>CGA	p.R135R	MUM1L1_uc004emg.1_Silent_p.R135R	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	135										ovary(2)|pancreas(1)|skin(1)	4						AAAAATACCGGAAGGATGAAG	0.418000													19	3					0	0	0.00229938	0	0
COL4A5	1287	broad.mit.edu	37	X	107850056	107850056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:107850056C>T	uc004enz.1	+	29	2531	c.2329C>T	c.(2329-2331)CGT>TGT	p.R777C	COL4A5_uc011mso.1_Missense_Mutation_p.R777C|COL4A5_uc004eob.1_Missense_Mutation_p.R385C	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	777	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AAAAGGTGATCGTGGTTTCCC	0.547000									Alport_syndrome_with_Diffuse_Leiomyomatosis				66	5					0	0	0.00361006	0	0
KLHL13	90293	broad.mit.edu	37	X	117043917	117043917	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:117043917T>C	uc004eql.2	-	5	775	c.713A>G	c.(712-714)GAG>GGG	p.E238G	KLHL13_uc004eqk.2_Missense_Mutation_p.E187G|KLHL13_uc011mtn.1_Missense_Mutation_p.E78G|KLHL13_uc011mto.1_Missense_Mutation_p.E232G|KLHL13_uc011mtp.1_Missense_Mutation_p.E240G|KLHL13_uc004eqm.2_Missense_Mutation_p.E187G|KLHL13_uc011mtq.1_Missense_Mutation_p.E222G	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	238	BACK.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						GGCAAGACGCTCAAAAGGGAG	0.463000													3	88					0	0	6.4e-05	0	0
GPR112	139378	broad.mit.edu	37	X	135433683	135433683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:135433683G>A	uc004ezu.1	+	7	7096	c.6805G>A	c.(6805-6807)GAA>AAA	p.E2269K	GPR112_uc010nsb.1_Missense_Mutation_p.E2064K|GPR112_uc010nsc.1_Intron	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2269	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGTTATAAATGAATTTACGGA	0.249000													50	1					0	0	0.00361006	0	0
F9	2158	broad.mit.edu	37	X	138630614	138630614	+	Nonsense_Mutation	SNP	C	T	T	rs137852272		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:138630614C>T	uc004fas.1	+	5	513	c.484C>T	c.(484-486)CGA>TGA	p.R162*	F9_uc004fat.1_Nonsense_Mutation_p.R124*	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	162	EGF-like 2.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	TGAGGGATATCGACTTGCAGA	0.358000													45	2					0	0	0.00361006	0	0
GPR50	9248	broad.mit.edu	37	X	150349230	150349230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:150349230C>T	uc010ntg.1	+	2	1310	c.1175C>T	c.(1174-1176)TCC>TTC	p.S392F	uc004fes.1_5'Flank	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	392	Cytoplasmic (Potential).|Pro-rich.				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CATTCCAGATCCTCCTCTGCC	0.582000													50	3					0	0	0.00361006	0	0
PASD1	139135	broad.mit.edu	37	X	150791487	150791487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:150791487G>A	uc004fev.3	+	7	829	c.497G>A	c.(496-498)CGG>CAG	p.R166Q		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	166						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAGGAGGATCGGCTTTATCTT	0.502000													62	8					0	0	0.00361006	0	0
CNGA2	1260	broad.mit.edu	37	X	150908112	150908112	+	Silent	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:150908112C>T	uc004fey.1	+	4	506	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	94	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTGACTCATTCCTCGAGCGTT	0.537000													17	0					0	0	0.000958276	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16734201	16734201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrY:16734201G>A	uc004ftg.2	+	2	454	c.202G>A	c.(202-204)GGT>AGT	p.G68S	NLGN4Y_uc004fte.2_Intron|NLGN4Y_uc011nas.1_Missense_Mutation_p.G68S|NLGN4Y_uc004ftf.2_5'UTR|NLGN4Y_uc004fth.2_Missense_Mutation_p.G68S|NLGN4Y_uc004fti.3_Missense_Mutation_p.G68S	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	68	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						TGAGATCTTGGGTCCAGTGGA	0.527000													41	1					0	0	0.00148497	0	0
NLGN4Y	22829	broad.mit.edu	37	Y	16941773	16941773	+	Silent	SNP	G	A	A			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrY:16941773G>A	uc004ftg.2	+	5	1227	c.975G>A	c.(973-975)GAG>GAA	p.E325E	NLGN4Y_uc004fte.2_Silent_p.E157E|NLGN4Y_uc011nas.1_Silent_p.E345E|NLGN4Y_uc004ftf.2_Silent_p.E18E|NLGN4Y_uc004fth.2_Silent_p.E325E	NM_014893	NP_055708	Q8NFZ3	NLGNY_HUMAN	neuroligin 4, Y-linked isoform 1	325	Extracellular (Potential).				brainstem development|cell adhesion|cerebellum development|male courtship behavior|positive regulation of organ growth|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|integral to plasma membrane|synapse	neurexin binding|receptor activity				0						ACTACAAGGAGCTCATCCAGC	0.572000													32	0					0	0	0.0024448	0	0
RBMY1A1	5940	broad.mit.edu	37	Y	23702640	23702640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrY:23702640C>T	uc004fuq.3	+	4	482	c.370C>T	c.(370-372)CCC>TCC	p.P124S	RBMY1A1_uc010nxa.2_Missense_Mutation_p.P124S|RBMY1A1_uc004fur.3_Intron|RBMY1A1_uc011nbd.1_Missense_Mutation_p.P89S	NM_001006120	NP_001006120	Q15414	RBY1A_HUMAN	RNA binding motif protein, Y-linked, family 1,	124					mRNA processing|RNA splicing|spermatogenesis	nucleus	nucleotide binding|RNA binding				0						AGGGTGGCTTCCCTCACATGA	0.433000													19	75					0	0	0.00395357	0	0
CENPL	91687	broad.mit.edu	37	1	173772132	173772133	+	Frame_Shift_Del	DEL	AC	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr1:173772132_173772133delAC	uc001gje.3	-	4	1145_1146	c.931_932delGT	c.(931-933)GTAfs	p.V311fs	CENPL_uc009wwg.2_Frame_Shift_Del_p.V185fs|CENPL_uc001gjg.3_Frame_Shift_Del_p.V357fs|CENPL_uc001gjf.3_Frame_Shift_Del_p.V311fs	NM_033319	NP_201576	Q8N0S6	CENPL_HUMAN	centromere protein L isoform 2	311					mitotic prometaphase	chromosome, centromeric region|cytosol|nucleus					0						TGCTGAAGCTACAGATGTTGAA	0.307													17	40	---	---	---	---					
PTEN	5728	broad.mit.edu	37	10	89690811	89690812	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr10:89690811_89690812delAA	uc001kfb.2	+	5	1249_1250	c.218_219delAA	c.(217-219)GAAfs	p.E73fs		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	73	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.L70fs*7(4)|p.R55fs*1(4)|p.?(2)|p.C71fs*6(2)|p.Y27fs*1(2)|p.Y27_N212>Y(2)|p.E73*(1)|p.E73fs*25(1)|p.E73fs*4(1)|p.E73V(1)|p.F56fs*2(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		AGTTGTGCTGAAAGACATTATG	0.267		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			18	7	---	---	---	---					
C14orf49	161176	broad.mit.edu	37	14	95923537	95923537	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr14:95923537delT	uc001yei.3	-	4	781	c.766delA	c.(766-768)ACGfs	p.T256fs	C14orf49_uc010avi.2_Frame_Shift_Del_p.T256fs|C14orf49_uc001yej.1_Frame_Shift_Del_p.T256fs	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	256	Spectrin 1.|Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		AGGCGCTGCGTGATGGGCAGC	0.572													26	12	---	---	---	---					
KIAA0556	23247	broad.mit.edu	37	16	27751863	27751863	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr16:27751863delG	uc002dow.2	+	15	2269	c.2245delG	c.(2245-2247)GGGfs	p.G749fs		NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	749										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						TGAGCCACCCGGGAAAACCCC	0.572													43	62	---	---	---	---					
CDH19	28513	broad.mit.edu	37	18	64221643	64221645	+	In_Frame_Del	DEL	TGT	-	-	rs141895623		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr18:64221643_64221645delTGT	uc002lkc.1	-	4	745_747	c.607_609delACA	c.(607-609)ACAdel	p.T203del	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_In_Frame_Del_p.T203del|CDH19_uc002lkd.2_In_Frame_Del_p.T203del	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	203	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				CACAAATACCTGTTGTTGGTTCA	0.389													28	6	---	---	---	---					
ANKRD23	200539	broad.mit.edu	37	2	97505794	97505794	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:97505794delC	uc002sxa.2	-	7	692	c.663delG	c.(661-663)CGGfs	p.R221fs	ANKRD23_uc002sxb.2_RNA|ANKRD23_uc002sxc.2_Frame_Shift_Del_p.R179fs	NM_144994	NP_659431	Q86SG2	ANR23_HUMAN	diabetes related ankyrin repeat protein	221	ANK 3.					nucleus				ovary(1)	1						AGTCGGGGTGCCGGGTGCGCA	0.647													2	4	---	---	---	---					
GRB14	2888	broad.mit.edu	37	2	165365287	165365288	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:165365287_165365288insT	uc002ucl.2	-	7	1432_1433	c.891_892insA	c.(889-894)AAACATfs	p.K297fs	GRB14_uc010zcv.1_Frame_Shift_Ins_p.K210fs|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	297_298	PH.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GGTGCTCCATGTTTTTTTTTGC	0.371													8	121	---	---	---	---					
NCKAP1	10787	broad.mit.edu	37	2	183817137	183817152	+	Frame_Shift_Del	DEL	AGTTCAGCAACTTGTG	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr2:183817137_183817152delAGTTCAGCAACTTGTG	uc002upc.2	-	23	2984_2999	c.2582_2597delCACAAGTTGCTGAACT	c.(2581-2598)TCACAAGTTGCTGAACTTfs	p.S861fs	NCKAP1_uc002upb.2_Frame_Shift_Del_p.S867fs	NM_013436	NP_038464	Q9Y2A7	NCKP1_HUMAN	NCK-associated protein 1 isoform 1	861_866					apoptosis|central nervous system development	integral to membrane|lamellipodium membrane	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			TATTACCTTAAGTTCAGCAACTTGTGATGAAATATG	0.296													12	81	---	---	---	---					
CDC42EP1	11135	broad.mit.edu	37	22	37964409	37964429	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	-	-	rs66468174	by1000genomes	TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr22:37964409_37964429delCAGCGCCTGCTGCAAACCCCT	uc003asz.3	+	3	1161_1181	c.758_778delCAGCGCCTGCTGCAAACCCCT	c.(757-780)CCAGCGCCTGCTGCAAACCCCTCA>CCA	p.APAANPS254del		NM_152243	NP_689449	Q00587	BORG5_HUMAN	CDC42 effector protein 1	254_260	6.|8 X 7 AA tandem repeats of [PT]-[AT]-A- [ENT]-[PT]-[PTS]-[AG].				positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|endomembrane system|Golgi apparatus|plasma membrane	protein binding				0	Melanoma(58;0.0574)					GCAAACCCCCCAGCGCCTGCTGCAAACCCCTCAGCACCTGC	0.665													4	8	---	---	---	---					
CRMP1	1400	broad.mit.edu	37	4	5837637	5837641	+	Splice_Site	DEL	CTTAC	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:5837637_5837641delCTTAC	uc003gip.2	-	12	1382	c.1281_splice	c.e12+1	p.S427_splice	CRMP1_uc003gin.1_Splice_Site_p.S339_splice|CRMP1_uc003giq.2_Splice_Site_p.S427_splice|CRMP1_uc003gir.2_Splice_Site_p.S422_splice|CRMP1_uc003gis.2_Splice_Site_p.S541_splice	NM_001313	NP_001304	Q14194	DPYL1_HUMAN	collapsin response mediator protein 1 isoform 2						axon guidance|pyrimidine base catabolic process	cytosol|microtubule organizing center|spindle	dihydropyrimidinase activity|protein binding			ovary(2)	2				Colorectal(103;0.0721)		TAGGCCAGGACTTACCGACTTGTGA	0.449													35	62	---	---	---	---					
WFS1	7466	broad.mit.edu	37	4	6302505	6302507	+	In_Frame_Del	DEL	TCT	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:6302505_6302507delTCT	uc003giy.2	+	8	1149_1151	c.983_985delTCT	c.(982-987)ATCTTC>ATC	p.F331del	WFS1_uc003gix.2_In_Frame_Del_p.F331del|WFS1_uc003giz.2_In_Frame_Del_p.F149del	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	331	Helical; (Potential).				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		AACGCGCTCATCTTCTTCTTCAT	0.542													136	472	---	---	---	---					
KIAA1211	57482	broad.mit.edu	37	4	57182826	57182828	+	In_Frame_Del	DEL	CTT	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:57182826_57182828delCTT	uc003hbk.2	+	8	3549_3551	c.3158_3160delCTT	c.(3157-3162)CCTTCT>CCT	p.S1054del	KIAA1211_uc010iha.2_In_Frame_Del_p.S1047del|KIAA1211_uc011bzz.1_In_Frame_Del_p.S964del|KIAA1211_uc003hbm.1_In_Frame_Del_p.S940del	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	1054										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CAAGAGAAACCTTCTCAAACACC	0.463													14	25	---	---	---	---					
CAMK2D	817	broad.mit.edu	37	4	114435031	114435033	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr4:114435031_114435033delCTC	uc003ibi.2	-	11	1715_1717	c.856_858delGAG	c.(856-858)GAGdel	p.E286del	CAMK2D_uc003ibj.2_In_Frame_Del_p.E286del|CAMK2D_uc003ibk.2_In_Frame_Del_p.E286del|CAMK2D_uc003ibo.3_In_Frame_Del_p.E286del|CAMK2D_uc003ibm.2_In_Frame_Del_p.E286del|CAMK2D_uc003ibn.2_In_Frame_Del_p.E286del|CAMK2D_uc003ibl.2_In_Frame_Del_p.E286del	NM_001221	NP_001212	Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II	286	Autoinhibitory domain (By similarity).				interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		AGTCTACAGTCTCCTGTCTGTGC	0.325													18	27	---	---	---	---					
DND1	373863	broad.mit.edu	37	5	140052285	140052285	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr5:140052285delT	uc003lgt.2	-	3	393	c.349delA	c.(349-351)ACGfs	p.T117fs		NM_194249	NP_919225	Q8IYX4	DND1_HUMAN	dead end homolog 1	117	RRM 1.				multicellular organismal development|negative regulation of gene silencing by miRNA	cytoplasm|nucleus	AU-rich element binding|nucleotide binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGTGCAGCGTGGCGATGGCG	0.682													3	5	---	---	---	---					
SYNCRIP	10492	broad.mit.edu	37	6	86324551	86324553	+	In_Frame_Del	DEL	CAC	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr6:86324551_86324553delCAC	uc003pla.2	-	11	2334_2336	c.1793_1795delGTG	c.(1792-1797)GGTGAT>GAT	p.G598del	SYNCRIP_uc003pku.2_Intron|SYNCRIP_uc003pkw.2_Intron|SYNCRIP_uc003pky.2_Intron|SYNCRIP_uc003pkv.2_Intron|SYNCRIP_uc003pkx.2_Intron|SYNCRIP_uc003pkz.2_In_Frame_Del_p.G563del	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	598					CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CCAGAATGATCACCACCTTGGAG	0.478													39	60	---	---	---	---					
MCPH1	79648	broad.mit.edu	37	8	6302515	6302516	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chr8:6302515_6302516insT	uc003wqi.2	+	8	1340_1341	c.1272_1273insT	c.(1270-1275)AGGTATfs	p.R424fs	MCPH1_uc003wqh.2_Frame_Shift_Ins_p.R424fs|MCPH1_uc011kwl.1_Frame_Shift_Ins_p.R376fs	NM_024596	NP_078872	Q8NEM0	MCPH1_HUMAN	microcephalin	424_425						microtubule organizing center				central_nervous_system(1)|skin(1)	2		Hepatocellular(245;0.0663)		Colorectal(4;0.0505)		TTAAGGAAAGGTATTCAGAGAA	0.465													42	54	---	---	---	---					
SYTL5	94122	broad.mit.edu	37	X	37965921	37965923	+	In_Frame_Del	DEL	CTT	-	-			TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:37965921_37965923delCTT	uc004ddu.2	+	12	1765_1767	c.1231_1233delCTT	c.(1231-1233)CTTdel	p.L412del	SYTL5_uc004ddv.2_In_Frame_Del_p.L412del|SYTL5_uc004ddx.2_In_Frame_Del_p.L434del	NM_001163335	NP_001156807	Q8TDW5	SYTL5_HUMAN	synaptotagmin-like 5 isoform 1	412	C2 1.				intracellular protein transport	membrane	metal ion binding|Rab GTPase binding			skin(1)	1						TGGTGAAATCCTTCTCCATATCA	0.429													8	39	---	---	---	---					
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	-	-	rs72249350		TCGA-EE-A3AH-06A-11D-A196-08	TCGA-EE-A3AH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	75df565b-121f-48fe-ba84-354b1d6cfa05	27cebc43-9d75-4968-8947-ad88e54ebdb4	g.chrX:38079976_38079978delGCA	uc004ddy.1	-	1	154_156	c.68_70delTGC	c.(67-72)CTGCGC>CGC	p.L23del	SRPX_uc004ddz.1_In_Frame_Del_p.L23del|SRPX_uc011mkh.1_In_Frame_Del_p.L23del|SRPX_uc011mki.1_In_Frame_Del_p.L23del	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	23			Missing.		cell adhesion	cell surface|membrane					0						GGCGGGACGCgcagcagcagcag	0.576											OREG0019726	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	2	---	---	---	---					
