Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NOC2L	26155	broad.mit.edu	37	1	881810	881810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:881810G>A	uc001abz.3	-	15	1834	c.1775C>T	c.(1774-1776)TCC>TTC	p.S592F	NOC2L_uc001aby.3_Missense_Mutation_p.S389F|NOC2L_uc009vjq.2_Missense_Mutation_p.S592F	NM_015658	NP_056473	Q9Y3T9	NOC2L_HUMAN	nucleolar complex associated 2 homolog	592						nucleolus	protein binding			ovary(1)|skin(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.86e-38)|OV - Ovarian serous cystadenocarcinoma(86;6.08e-23)|Colorectal(212;0.000161)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(365;0.000475)|Kidney(185;0.00231)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0344)|Lung(427;0.2)		GACGCCGAAGGAAACCCTCTG	0.632													31	63					0	0	1	0	0
SDF4	51150	broad.mit.edu	37	1	1152973	1152973	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:1152973G>A	uc001adh.3	-	7	1337	c.1008C>T	c.(1006-1008)CCC>CCT	p.P336P	SDF4_uc001adg.2_RNA|SDF4_uc001adi.3_3'UTR|SDF4_uc009vjv.2_Silent_p.P214P|SDF4_uc009vjw.2_RNA	NM_016176	NP_057260	Q9BRK5	CAB45_HUMAN	stromal cell derived factor 4 isoform 2	336	6 (Potential).|Necessary for intracellular retention in Golgi apparatus lumen (By similarity).|EF-hand 6.				cerebellum development|fat cell differentiation|response to ethanol|UV protection|zymogen granule exocytosis	bleb|Golgi lumen|late endosome|soluble fraction	calcium ion binding|calcium ion binding|identical protein binding|protein binding			upper_aerodigestive_tract(1)|large_intestine(1)	2	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;7.85e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.42e-21)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;4.83e-05)|Kidney(185;0.00252)|BRCA - Breast invasive adenocarcinoma(365;0.00263)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0368)|Lung(427;0.204)		GCACCTCCTCGGGCTCCAGGT	0.547													25	45					0	0	1	0	0
MMEL1	79258	broad.mit.edu	37	1	2537024	2537024	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:2537024G>C	uc001ajy.2	-	9	1003	c.789C>G	c.(787-789)TAC>TAG	p.Y263*	MMEL1_uc009vlg.1_RNA	NM_033467	NP_258428	Q495T6	MMEL1_HUMAN	membrane metallo-endopeptidase-like 1	263	Lumenal (Potential).				proteolysis	extracellular region|integral to membrane|intracellular membrane-bounded organelle	metal ion binding|metalloendopeptidase activity				0	all_cancers(77;0.000233)|all_epithelial(69;8.55e-05)|all_lung(157;0.0228)|Lung NSC(156;0.0402)|Ovarian(185;0.0634)	all_epithelial(116;1.03e-20)|all_lung(118;5.15e-09)|Lung NSC(185;9.02e-07)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;4.31e-38)|OV - Ovarian serous cystadenocarcinoma(86;8.52e-23)|GBM - Glioblastoma multiforme(42;1.49e-08)|Colorectal(212;4.79e-05)|COAD - Colon adenocarcinoma(227;0.000213)|Kidney(185;0.000371)|BRCA - Breast invasive adenocarcinoma(365;0.00219)|KIRC - Kidney renal clear cell carcinoma(229;0.00571)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.131)		CGTTGAAGTAGTACTCTCGGG	0.652													31	64					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6171884	6171884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:6171884C>T	uc001amb.1	-	36	5300	c.5200G>A	c.(5200-5202)GAC>AAC	p.D1734N	CHD5_uc001alz.1_Missense_Mutation_p.D591N|CHD5_uc001ama.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1734					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TGCCAGATGTCGTAGATTTTC	0.622													42	61					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6185911	6185911	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:6185911C>T	uc001amb.1	-	27	4186	c.4086G>A	c.(4084-4086)CAG>CAA	p.Q1362Q	CHD5_uc001alz.1_Silent_p.Q219Q|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1362					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		AGAGCTCATCCTGCCACTCTG	0.572													57	99					0	0	1	0	0
CHD5	26038	broad.mit.edu	37	1	6219501	6219501	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:6219501G>A	uc001amb.1	-	3	382	c.282C>T	c.(280-282)TCC>TCT	p.S94S		NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	94	Lys-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ttttattcGGGGAGTAGTCAC	0.299													4	7					0	0	1	0	0
GPR153	387509	broad.mit.edu	37	1	6310636	6310636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:6310636G>A	uc001amp.1	-	5	1288	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	GPR153_uc001amo.1_5'Flank	NM_207370	NP_997253	Q6NV75	GP153_HUMAN	G protein-coupled receptor 153	343	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	Ovarian(185;0.0634)	all_cancers(23;8.07e-33)|all_epithelial(116;4.45e-18)|all_lung(118;1.09e-06)|all_neural(13;3.68e-06)|Lung NSC(185;1.52e-05)|all_hematologic(16;2.39e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00475)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;1.91e-37)|GBM - Glioblastoma multiforme(13;4.87e-29)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;1.33e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.246)		ATAGTCCAGGGAGCGCTCCAA	0.617													6	10					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7700579	7700579	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:7700579G>A	uc001aoi.2	+	7	837	c.630G>A	c.(628-630)ACG>ACA	p.T210T		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	210					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CGAAATGGACGAAAGAAGAGC	0.637													56	66					0	0	1	0	0
ERRFI1	54206	broad.mit.edu	37	1	8074056	8074056	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:8074056G>A	uc001aoz.2	-	4	852	c.603C>T	c.(601-603)TTC>TTT	p.F201F	ERRFI1_uc001apa.1_Silent_p.F126F	NM_018948	NP_061821	Q9UJM3	ERRFI_HUMAN	mitogen-inducible gene 6 protein	201					lung alveolus development|lung epithelium development|lung vasculature development|negative regulation of epidermal growth factor receptor activity|negative regulation of protein autophosphorylation|regulation of keratinocyte differentiation|response to stress|skin morphogenesis	cytoplasm|extrinsic to internal side of plasma membrane|nucleus	protein kinase binding|Rho GTPase activator activity			ovary(1)	1	Ovarian(185;0.06)|all_lung(157;0.151)	all_epithelial(116;1.76e-16)|all_lung(118;3.66e-05)|Lung NSC(185;0.000163)|Renal(390;0.000469)|Colorectal(325;0.0033)|Breast(348;0.0044)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.11)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;2.33e-70)|GBM - Glioblastoma multiforme(8;8.05e-37)|Colorectal(212;6.23e-08)|COAD - Colon adenocarcinoma(227;6.9e-06)|Kidney(185;4.89e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|STAD - Stomach adenocarcinoma(132;0.000985)|READ - Rectum adenocarcinoma(331;0.0642)		CACACCCACGGAAGCTTCGCC	0.443													21	26					0	0	1	0	0
UBIAD1	29914	broad.mit.edu	37	1	11346122	11346122	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:11346122C>T	uc001asg.2	+	2	1285	c.951C>T	c.(949-951)CTC>CTT	p.L317L		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	317	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		AGCTCAACCTCCTGCTGGGAC	0.547													60	69					0	0	1	0	0
NPPB	4879	broad.mit.edu	37	1	11918270	11918270	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:11918270C>T	uc001atj.2	-	2	490	c.388_splice	c.e2+1	p.V130_splice		NM_002521	NP_002512	P16860	ANFB_HUMAN	natriuretic peptide precursor B preproprotein						body fluid secretion|cGMP biosynthetic process|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation	extracellular space	diuretic hormone activity			ovary(2)	2	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;4.88e-06)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)	Carvedilol(DB01136)|Nesiritide(DB04899)|Testosterone(DB00624)	GGGGTGCTTACCTTTGCAGCC	0.597													20	29					0	0	1	0	0
MIIP	60672	broad.mit.edu	37	1	12090088	12090088	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:12090088G>A	uc001ato.1	+	8	1029	c.849G>A	c.(847-849)GTG>GTA	p.V283V		NM_021933	NP_068752	Q5JXC2	MIIP_HUMAN	invasion inhibitory protein 45	283										ovary(1)	1						TGCGCAGGGTGAGCATCCCGC	0.667													29	45					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12304631	12304631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:12304631C>T	uc001atv.2	+	5	545	c.404C>T	c.(403-405)TCA>TTA	p.S135L	VPS13D_uc001atw.2_Missense_Mutation_p.S135L	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	135					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TATTGGTATTCAGTTACCGCC	0.418													40	62					0	0	1	0	0
VPS13D	55187	broad.mit.edu	37	1	12309337	12309337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:12309337C>T	uc001atv.2	+	6	646	c.505C>T	c.(505-507)CCT>TCT	p.P169S	VPS13D_uc001atw.2_Missense_Mutation_p.P169S	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	169					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		TCCCTCCCATCCTTTTGCTTT	0.408													19	32					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183060	13183060	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:13183060C>T	uc010obg.1	-	1	908	c.813G>A	c.(811-813)AAG>AAA	p.K271K		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	271						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						TTTCATTATTCTTGATCAAAT	0.478													17	52					0	0	1	0	0
LOC440563	440563	broad.mit.edu	37	1	13183444	13183444	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:13183444C>T	uc010obg.1	-	1	524	c.429G>A	c.(427-429)TCG>TCA	p.S143S		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	143						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GCTGGTGTTTCGAGGGCACTA	0.498													66	302					0	0	1	0	0
DNAJC16	23341	broad.mit.edu	37	1	15890581	15890581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:15890581C>T	uc001aws.2	+	10	1616	c.1496C>T	c.(1495-1497)CCT>CTT	p.P499L	DNAJC16_uc001awr.1_Missense_Mutation_p.P499L|DNAJC16_uc001awt.2_Missense_Mutation_p.P187L|DNAJC16_uc001awu.2_RNA	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	499	Cytoplasmic (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		GCAGTGCTTCCTGACCTGACC	0.552													68	169					0	0	1	0	0
AGMAT	79814	broad.mit.edu	37	1	15904213	15904213	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:15904213C>T	uc001awv.1	-	5	1010	c.867G>A	c.(865-867)GGG>GGA	p.G289G	DNAJC16_uc001awu.2_Intron	NM_024758	NP_079034	Q9BSE5	SPEB_HUMAN	agmatine ureohydrolase (agmatinase) precursor	289					putrescine biosynthetic process|spermidine biosynthetic process	mitochondrion	agmatinase activity|metal ion binding			skin(1)	1		Breast(348;0.000207)|Colorectal(325;0.000258)|Lung NSC(340;0.000359)|all_lung(284;0.000486)|Renal(390;0.000518)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.93e-07)|COAD - Colon adenocarcinoma(227;3.91e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000121)|KIRC - Kidney renal clear cell carcinoma(229;0.00257)|STAD - Stomach adenocarcinoma(313;0.00734)|READ - Rectum adenocarcinoma(331;0.0649)		TTTCAGGTGTCCCTGTCCCTG	0.517													30	69					0	0	1	0	0
FBLIM1	54751	broad.mit.edu	37	1	16095058	16095058	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:16095058C>T	uc001axd.1	+	6	917	c.474C>T	c.(472-474)CCC>CCT	p.P158P	FBLIM1_uc001axe.1_Silent_p.P158P|FBLIM1_uc001axf.2_RNA|FBLIM1_uc001axg.1_Silent_p.P158P|FBLIM1_uc001axh.1_Intron|FBLIM1_uc001axi.1_Intron	NM_017556	NP_060026	Q8WUP2	FBLI1_HUMAN	filamin-binding LIM protein-1 isoform a	158	Pro-rich.				cell adhesion|cell junction assembly|regulation of cell shape	cell cortex|cytoskeleton|cytosol|focal adhesion|intracellular membrane-bounded organelle	zinc ion binding			skin(1)	1		Colorectal(325;0.000257)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.56e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|READ - Rectum adenocarcinoma(331;0.0649)|STAD - Stomach adenocarcinoma(313;0.138)		AGCCCGGTCCCCTCAGGCCCA	0.652													16	72					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16456036	16456036	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:16456036G>A	uc001aya.1	-	16	2855	c.2718C>T	c.(2716-2718)TTC>TTT	p.F906F		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	906	SAM.|Mediates interaction with ARHGEF16 and ELMO2.|Cytoplasmic (Potential).|Negatively regulates interaction with ARHGEF16.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	ACACCGTGCGGAAGGGCACCC	0.473													36	56					0	0	1	0	0
EPHA2	1969	broad.mit.edu	37	1	16461641	16461641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:16461641G>A	uc001aya.1	-	7	1609	c.1472C>T	c.(1471-1473)TCC>TTC	p.S491F		NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	491	Extracellular (Potential).|Fibronectin type-III 2.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	CAGGGTCACGGAGAAACCCTC	0.687													72	168					0	0	1	0	0
SPATA21	374955	broad.mit.edu	37	1	16725845	16725845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:16725845C>T	uc001ayn.2	-	12	1829	c.1346G>A	c.(1345-1347)GGA>GAA	p.G449E	SPATA21_uc001ayl.1_RNA|SPATA21_uc010occ.1_Missense_Mutation_p.G426E	NM_198546	NP_940948	Q7Z572	SPT21_HUMAN	spermatogenesis associated 21	449							calcium ion binding			ovary(2)|breast(1)	3		Colorectal(325;0.000147)|Renal(390;0.00145)|Lung NSC(340;0.00215)|Breast(348;0.00224)|all_lung(284;0.00351)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|COAD - Colon adenocarcinoma(227;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;4.2e-05)|Kidney(64;0.000183)|KIRC - Kidney renal clear cell carcinoma(64;0.00269)|STAD - Stomach adenocarcinoma(313;0.0122)|READ - Rectum adenocarcinoma(331;0.0651)		CCACCTGTTTCCTTGAGATCC	0.577													20	33					0	0	1	0	0
ATP13A2	23400	broad.mit.edu	37	1	17314703	17314703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:17314703G>A	uc001baa.2	-	25	2979	c.2789C>T	c.(2788-2790)TCG>TTG	p.S930L	ATP13A2_uc001azz.1_Missense_Mutation_p.S77L|ATP13A2_uc001bab.2_Missense_Mutation_p.S925L|ATP13A2_uc001bac.2_Missense_Mutation_p.S886L	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	930	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		GACGCTGAACGAAGTGTCAAG	0.607													26	66					0	0	1	0	0
IGSF21	84966	broad.mit.edu	37	1	18702816	18702816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:18702816G>A	uc001bau.1	+	7	1411	c.1028G>A	c.(1027-1029)GGA>GAA	p.G343E	IGSF21_uc001bav.1_Missense_Mutation_p.G164E	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	343						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		GCCCCCAAAGGACCCAAAATT	0.532													73	240					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19175919	19175920	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:19175919_19175920GG>AA	uc001bba.1	-	4	1383_1384	c.1382_1383CC>TT	c.(1381-1383)CCC>CTT	p.P461L		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	461	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CGCTCTGGAAGGGATTCTGGCT	0.579													24	57					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19180849	19180849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:19180849G>A	uc001bba.1	-	3	1116	c.1115C>T	c.(1114-1116)TCC>TTC	p.S372F		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	372	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GGTGTTGAAGGACAAGGTGGC	0.632													14	19					0	0	1	0	0
TAS1R2	80834	broad.mit.edu	37	1	19181459	19181459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:19181459C>T	uc001bba.1	-	3	506	c.505G>A	c.(505-507)GAT>AAT	p.D169N		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor	169	Extracellular (Potential).				detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	CGCAGCTCATCGCTGATGGCG	0.642													30	33					0	0	1	0	0
KDM1A	23028	broad.mit.edu	37	1	23357066	23357066	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:23357066C>T	uc001bgi.2	+	2	605	c.456C>T	c.(454-456)CCC>CCT	p.P152P	KDM1A_uc001bgj.2_Silent_p.P152P	NM_015013	NP_055828	O60341	KDM1A_HUMAN	lysine-specific histone demethylase 1 isoform b	152	Poly-Pro.				blood coagulation|muscle cell development|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin	androgen receptor binding|chromatin binding|enzyme binding|flavin adenine dinucleotide binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-K9 specific)|ligand-dependent nuclear receptor transcription coactivator activity|MyoD binding|oxidoreductase activity|p53 binding|transcription regulatory region DNA binding	p.P152T(1)		ovary(1)|lung(1)	2						AGAAGCTTCCCCCACCACCCC	0.453													33	62					0	0	1	0	0
GALE	2582	broad.mit.edu	37	1	24124654	24124654	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:24124654G>A	uc009vqo.1	-	4	514	c.304C>T	c.(304-306)CTG>TTG	p.L102L	GALE_uc001bhv.1_Silent_p.L102L|GALE_uc001bhw.1_Silent_p.L102L|GALE_uc001bhx.1_Silent_p.L102L|GALE_uc009vqp.1_Silent_p.L102L|GALE_uc001bhy.1_Silent_p.L102L|GALE_uc001bhz.1_Silent_p.L28L|GALE_uc001bia.2_5'Flank|GALE_uc009vqq.1_3'UTR	NM_001127621	NP_001121093	Q14376	GALE_HUMAN	UDP-galactose-4-epimerase	102					galactose catabolic process	cytosol	coenzyme binding|protein homodimerization activity|UDP-glucose 4-epimerase activity				0		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Breast(348;0.0044)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;1.79e-24)|Colorectal(126;4.8e-08)|COAD - Colon adenocarcinoma(152;2.83e-06)|GBM - Glioblastoma multiforme(114;4.22e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000946)|KIRC - Kidney renal clear cell carcinoma(1967;0.00314)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0827)|LUSC - Lung squamous cell carcinoma(448;0.184)		TAATAATCCAGAGGCTTCTGC	0.587													34	87					0	0	1	0	0
CNR2	1269	broad.mit.edu	37	1	24201692	24201692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:24201692G>A	uc001bif.2	-	2	543	c.416C>T	c.(415-417)CCT>CTT	p.P139L		NM_001841	NP_001832	P34972	CNR2_HUMAN	cannabinoid receptor 2 (macrophage)	139	Cytoplasmic (Potential).				behavior|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|inflammatory response	dendrite|integral to plasma membrane|perikaryon	cannabinoid receptor activity			skin(2)|central_nervous_system(1)	3		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.32e-24)|Colorectal(126;6.09e-08)|COAD - Colon adenocarcinoma(152;3.33e-06)|GBM - Glioblastoma multiforme(114;2.9e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00359)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.146)	Nabilone(DB00486)	TTTGTAGGAAGGTGGATAGCG	0.582													51	73					0	0	1	0	0
CNKSR1	10256	broad.mit.edu	37	1	26515862	26515862	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:26515862G>A	uc001bln.3	+	21	2044	c.1986G>A	c.(1984-1986)CGG>CGA	p.R662R	CNKSR1_uc001blm.3_Silent_p.R655R|CNKSR1_uc009vsd.2_Silent_p.R397R|CNKSR1_uc009vse.2_Silent_p.R397R|CNKSR1_uc001blo.2_Silent_p.R397R|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	662					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		AGCAGAACCGGGAGCTGTACT	0.617													16	31					0	0	1	0	0
CCDC21	64793	broad.mit.edu	37	1	26586192	26586192	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:26586192A>G	uc001bls.1	+	7	1371	c.1240A>G	c.(1240-1242)AAG>GAG	p.K414E	CCDC21_uc001blr.2_Missense_Mutation_p.K414E|CCDC21_uc010ofa.1_Missense_Mutation_p.K363E	NM_022778	NP_073615	Q6P2H3	CEP85_HUMAN	coiled-coil domain containing 21	414	Potential.					centrosome|nucleolus|spindle pole					0		all_cancers(24;7e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.6e-26)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;9.48e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00917)|READ - Rectum adenocarcinoma(331;0.0649)		TGACCTTGAAAAGAAACTCTC	0.443													36	60					0	0	1	0	0
AIM1L	55057	broad.mit.edu	37	1	26663805	26663805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:26663805G>A	uc001bmd.3	-	9	1005	c.575C>T	c.(574-576)CCA>CTA	p.P192L	AIM1L_uc001bmf.3_Missense_Mutation_p.P83L	NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like	192	Beta/gamma crystallin 'Greek key' 4.						sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		TGACCAGTCTGGGTATTCCCC	0.617													59	73					0	0	1	0	0
NUDC	10726	broad.mit.edu	37	1	27269235	27269235	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:27269235T>C	uc001bng.1	+	5	630	c.514T>C	c.(514-516)TAC>CAC	p.Y172H	NUDC_uc001bnh.1_Missense_Mutation_p.Y229H|NUDC_uc009vsq.1_Missense_Mutation_p.Y146H	NM_006600	NP_006591	Q9Y266	NUDC_HUMAN	nuclear distribution gene C homolog	172	CS.				cell proliferation|cytokinesis|mitotic prometaphase|multicellular organismal development	cytosol|microtubule|nucleoplasm	protein binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;6.1e-51)|OV - Ovarian serous cystadenocarcinoma(117;2.87e-29)|Colorectal(126;5.74e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000281)|STAD - Stomach adenocarcinoma(196;0.000604)|KIRC - Kidney renal clear cell carcinoma(1967;0.000739)|READ - Rectum adenocarcinoma(331;0.0421)		CCTGCCCAATTACCGCTGGAC	0.567													21	32					0	0	1	0	0
SESN2	83667	broad.mit.edu	37	1	28605652	28605653	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:28605652_28605653GG>AA	uc001bps.2	+	9	1609_1610	c.1256_1257GG>AA	c.(1255-1257)CGG>CAA	p.R419Q		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2	419					cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		CTCCTGGAGCGGAACCTCAAGG	0.52													47	63					0	0	1	0	0
GMEB1	10691	broad.mit.edu	37	1	29040629	29040629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:29040629C>T	uc001bra.2	+	10	1204	c.1066C>T	c.(1066-1068)CAC>TAC	p.H356Y	GMEB1_uc001bqz.2_Missense_Mutation_p.H346Y|GMEB1_uc001brb.2_Missense_Mutation_p.H346Y	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	356	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		AGGCCAGGATCACAGGCTGAA	0.473													45	99					0	0	1	0	0
MECR	51102	broad.mit.edu	37	1	29542631	29542631	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:29542631G>A	uc001brq.1	-	3	328	c.292C>T	c.(292-294)CCT>TCT	p.P98S	MECR_uc001brp.1_Missense_Mutation_p.P22S|MECR_uc001brr.1_Missense_Mutation_p.P22S|MECR_uc001brs.1_RNA|MECR_uc001brt.1_Missense_Mutation_p.P22S|MECR_uc010ofz.1_Missense_Mutation_p.P98S	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	98					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		GGCAGTTCAGGAAGGAATCCG	0.438													31	89					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29611288	29611288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:29611288C>T	uc001bru.2	+	14	2335	c.2225C>T	c.(2224-2226)TCG>TTG	p.S742L	PTPRU_uc001brv.2_Missense_Mutation_p.S742L|PTPRU_uc001brw.2_Missense_Mutation_p.S742L|PTPRU_uc009vtq.2_Missense_Mutation_p.S742L|PTPRU_uc009vtr.2_Missense_Mutation_p.S742L	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	742	Extracellular (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		TCCCAGAGATCGGAGGAGATG	0.582													23	79					0	0	1	0	0
PTPRU	10076	broad.mit.edu	37	1	29618381	29618381	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:29618381G>A	uc001bru.2	+	16	2459	c.2349G>A	c.(2347-2349)CCG>CCA	p.P783P	PTPRU_uc001brv.2_Silent_p.G773G|PTPRU_uc001brw.2_Silent_p.G773G|PTPRU_uc009vtq.2_Silent_p.G773G|PTPRU_uc009vtr.2_Silent_p.G773G	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	783	Mediates interaction with CTNNB1 (By similarity).|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		CCCTCTCCAGGAAGCCGGTGA	0.632													12	24					0	0	1	0	0
SERINC2	347735	broad.mit.edu	37	1	31898701	31898701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:31898701C>T	uc010ogh.1	+	5	764	c.563C>T	c.(562-564)TCC>TTC	p.S188F	SERINC2_uc010ogg.1_Missense_Mutation_p.S185F|SERINC2_uc009vtw.1_Silent_p.L157L|SERINC2_uc001bst.2_Missense_Mutation_p.S184F|SERINC2_uc001bsu.2_Missense_Mutation_p.S129F|SERINC2_uc001bsv.2_Missense_Mutation_p.S129F	NM_178865	NP_849196	Q96SA4	SERC2_HUMAN	tumor differentially expressed 2-like	184						integral to membrane					0		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0541)|READ - Rectum adenocarcinoma(331;0.151)		TTTGCGCACTCCTGGAACCAG	0.637													37	40					0	0	1	0	0
AK2	204	broad.mit.edu	37	1	33478945	33478945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:33478945C>T	uc001bwp.1	-	6	599	c.557G>A	c.(556-558)CGC>CAC	p.R186H	uc001bwn.2_Intron|AK2_uc001bwo.1_Missense_Mutation_p.R186H|AK2_uc010ohq.1_Missense_Mutation_p.R178H|AK2_uc009vud.1_Missense_Mutation_p.R144H|AK2_uc010ohr.1_Missense_Mutation_p.R138H|AK2_uc001bwq.1_Missense_Mutation_p.R138H	NM_001625	NP_001616	P54819	KAD2_HUMAN	adenylate kinase 2 isoform a	186					nucleobase, nucleoside and nucleotide interconversion	mitochondrial intermembrane space	adenylate kinase activity|ATP binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				GGCTTGCAGGCGGATTTTCAA	0.532													21	34					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34089037	34089037	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:34089037C>T	uc001bxn.1	-	36	5564	c.5535G>A	c.(5533-5535)CAG>CAA	p.Q1845Q	CSMD2_uc001bxm.1_Silent_p.Q1885Q|CSMD2_uc001bxo.1_Silent_p.Q758Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1845	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGTCCCAGTTCTGCTCTGTCA	0.502													23	63					0	0	1	0	0
GJA4	2701	broad.mit.edu	37	1	35259982	35259982	+	Silent	SNP	G	A	A	rs149329150		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:35259982G>A	uc001bya.2	+	2	256	c.168G>A	c.(166-168)ACG>ACA	p.T56T	GJA4_uc009vul.2_Silent_p.T132T|GJA4_uc009vum.1_Silent_p.T56T	NM_002060	NP_002051	P35212	CXA4_HUMAN	connexin 37	56	Extracellular (Potential).				cell-cell junction assembly	integral to plasma membrane				central_nervous_system(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.234)				AGTGTAACACGGCCCAGCCAG	0.602													41	128					0	0	1	0	0
EIF2C1	26523	broad.mit.edu	37	1	36384808	36384808	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:36384808G>A	uc001bzl.2	+	18	2631	c.2418G>A	c.(2416-2418)CTG>CTA	p.L806L	EIF2C1_uc001bzk.2_Silent_p.L731L|EIF2C1_uc009vuy.2_RNA	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	806	Piwi.				negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ATGCCCGCCTGGTGGCTTTCC	0.572													16	30					0	0	1	0	0
THRAP3	9967	broad.mit.edu	37	1	36748198	36748198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:36748198C>T	uc001cae.3	+	3	258	c.34C>T	c.(34-36)CGC>TGC	p.R12C	THRAP3_uc001caf.3_Missense_Mutation_p.R12C|THRAP3_uc001cag.1_Missense_Mutation_p.R12C	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	12	Arg-rich.|Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GTCTGGATCTCGCTCTTCTCG	0.433			T	USP6	aneurysmal bone cysts								22	33					0	0	1	0	0
CSF3R	1441	broad.mit.edu	37	1	36941030	36941030	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:36941030C>T	uc001caw.1	-	4	487	c.309G>A	c.(307-309)CTG>CTA	p.L103L	CSF3R_uc001cav.1_Silent_p.L103L|CSF3R_uc001cax.1_Silent_p.L103L|CSF3R_uc001cay.1_Silent_p.L103L	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	103	Ig-like C2-type.|Extracellular (Potential).				cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TGCCCCAGTTCAGGCAGCAGG	0.612													55	61					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39802258	39802258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:39802258C>T	uc010oiu.1	+	1	5449	c.5318C>T	c.(5317-5319)CCC>CTC	p.P1773L	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3338					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GAACAAACTCCCTTCATGACT	0.463													31	57					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39926465	39926465	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:39926465C>T	uc010oiu.1	+	57	16982	c.16851C>T	c.(16849-16851)TCC>TCT	p.S5617S	MACF1_uc010ois.1_Silent_p.S5115S|MACF1_uc001cde.1_5'Flank|MACF1_uc001cdf.1_5'Flank	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7073	EF-hand 1.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			TTTTAGCATCCAGTGAGTCTA	0.423													45	118					0	0	1	0	0
PABPC4	8761	broad.mit.edu	37	1	40035300	40035300	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:40035300A>G	uc010oiv.1	-	5	1603	c.705T>C	c.(703-705)TTT>TTC	p.F235F	PABPC4_uc001cdl.2_Silent_p.F235F|PABPC4_uc001cdm.2_Silent_p.F235F|SNORA55_uc001cdo.1_5'Flank	NM_003819	NP_003810	Q13310	PABP4_HUMAN	poly A binding protein, cytoplasmic 4 isoform 2	235	RRM 3.				blood coagulation|RNA catabolic process|RNA processing|translation	cytoplasm|ribonucleoprotein complex	nucleotide binding|poly(A) RNA binding|poly(U) RNA binding|protein binding				0	Lung NSC(20;1.55e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.89e-18)|Epithelial(16;6.17e-17)|all cancers(16;1.18e-15)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			CGTAACTCACAAAGCCAAAGC	0.433													66	65					0	0	1	0	0
NT5C1A	84618	broad.mit.edu	37	1	40131848	40131848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:40131848C>T	uc001cdq.1	-	2	196	c.196G>A	c.(196-198)GAG>AAG	p.E66K		NM_032526	NP_115915	Q9BXI3	5NT1A_HUMAN	5'-nucleotidase, cytosolic IA	66					purine base metabolic process|purine nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			ovary(1)	1	Lung NSC(20;3.81e-06)|Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.87e-18)|Epithelial(16;4.3e-17)|all cancers(16;8.48e-16)|LUSC - Lung squamous cell carcinoma(16;0.000261)|Lung(16;0.000457)			TGCTGCTCCTCGTCCATGCGA	0.582													48	55					0	0	1	0	0
COL9A2	1298	broad.mit.edu	37	1	40771858	40771858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:40771858C>T	uc001cfh.1	-	20	1080	c.1010G>A	c.(1009-1011)GGT>GAT	p.G337D	COL9A2_uc001cfi.1_Missense_Mutation_p.G156D	NM_001852	NP_001843	Q14055	CO9A2_HUMAN	alpha 2 type IX collagen precursor	337	Triple-helical region 3 (COL3).				axon guidance|skeletal system development	collagen type IX				ovary(2)	2	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;2.08e-17)			GCCTGGCACACCCTGCAGAAA	0.587													17	37					0	0	1	0	0
SLFNL1	200172	broad.mit.edu	37	1	41483316	41483316	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:41483316G>A	uc001cgm.1	-	3	1168	c.948C>T	c.(946-948)GTC>GTT	p.V316V	SLFNL1_uc009vwf.1_Silent_p.V316V|SLFNL1_uc001cgn.1_Silent_p.V257V|SLFNL1_uc009vwg.1_Silent_p.V316V	NM_144990	NP_659427	Q499Z3	SLNL1_HUMAN	schlafen-like 1	316							ATP binding			skin(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0393)				CCTTGAGGGGGACGCTGGTCT	0.597													33	105					0	0	1	0	0
WDR65	149465	broad.mit.edu	37	1	43649275	43649275	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:43649275C>T	uc001cip.1	+	4	609	c.488C>T	c.(487-489)CCA>CTA	p.P163L	EBNA1BP2_uc001cio.2_Intron|WDR65_uc010ojz.1_Missense_Mutation_p.P152L|WDR65_uc001ciq.1_Missense_Mutation_p.P163L	NM_152498	NP_689711	Q96MR6	WDR65_HUMAN	WD repeat domain 65	163	WD 2.									skin(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGCTTCAGTCCACAGGATAAC	0.368													17	38					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43777489	43777489	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:43777489C>A	uc001ciu.2	+	10	1560	c.1481C>A	c.(1480-1482)TCG>TAG	p.S494*	TIE1_uc010okd.1_Nonsense_Mutation_p.S494*|TIE1_uc010oke.1_Nonsense_Mutation_p.S449*|TIE1_uc009vwq.2_Nonsense_Mutation_p.S450*|TIE1_uc010okf.1_Nonsense_Mutation_p.S139*|TIE1_uc010okg.1_Nonsense_Mutation_p.S139*	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	494	Extracellular (Potential).|Fibronectin type-III 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ATGGACTGGTCGACCATTGTG	0.602													41	58					7.05377e-20	7.17794e-20	1	1	0
TIE1	7075	broad.mit.edu	37	1	43777747	43777747	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:43777747G>A	uc001ciu.2	+	11	1654	c.1575G>A	c.(1573-1575)GGG>GGA	p.G525G	TIE1_uc010okd.1_Silent_p.G525G|TIE1_uc010oke.1_Silent_p.G480G|TIE1_uc009vwq.2_Silent_p.G481G|TIE1_uc010okf.1_Silent_p.G170G|TIE1_uc010okg.1_Silent_p.G170G	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	525	Extracellular (Potential).|Fibronectin type-III 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GCCGGCCAGGGGAAGGAGGAG	0.602													33	61					0	0	1	0	0
TIE1	7075	broad.mit.edu	37	1	43784950	43784950	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:43784950G>A	uc001ciu.2	+	18	3046	c.2967G>A	c.(2965-2967)GAG>GAA	p.E989E	TIE1_uc010oke.1_Silent_p.E944E|TIE1_uc009vwq.2_Silent_p.E945E|TIE1_uc010okg.1_Silent_p.E634E	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	989	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGGTCGGAGAGAACCTAGCCT	0.567													26	65					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44084349	44084349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:44084349C>T	uc001cjr.2	+	26	4760	c.4420C>T	c.(4420-4422)CTT>TTT	p.L1474F	PTPRF_uc001cjs.2_Missense_Mutation_p.L1465F|PTPRF_uc001cju.2_Missense_Mutation_p.L863F|PTPRF_uc009vwt.2_Missense_Mutation_p.L1034F|PTPRF_uc001cjv.2_Missense_Mutation_p.L945F|PTPRF_uc001cjw.2_Missense_Mutation_p.L700F	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1474	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GACCTGTGGCCTTATTCAGGT	0.572													69	102					0	0	1	0	0
PTPRF	5792	broad.mit.edu	37	1	44086509	44086509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:44086509G>A	uc001cjr.2	+	32	5705	c.5365G>A	c.(5365-5367)GAT>AAT	p.D1789N	PTPRF_uc001cjs.2_Missense_Mutation_p.D1780N|PTPRF_uc001cju.2_Missense_Mutation_p.D1178N|PTPRF_uc009vwt.2_Missense_Mutation_p.D1349N|PTPRF_uc001cjv.2_Missense_Mutation_p.D1260N|PTPRF_uc001cjw.2_Missense_Mutation_p.D1015N	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1789	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CCTTTCCCAGGATGGGCAGTC	0.557													21	51					0	0	1	0	0
EIF2B3	8891	broad.mit.edu	37	1	45316635	45316635	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:45316635G>A	uc001cmt.1	-	12	1474	c.1347C>T	c.(1345-1347)CTC>CTT	p.L449L	EIF2B3_uc001cmu.1_3'UTR|EIF2B3_uc001cmv.1_Silent_p.L423L	NM_020365	NP_065098	Q9NR50	EI2BG_HUMAN	eukaryotic translation initiation factor 2B,	449					negative regulation of translational initiation in response to stress|oligodendrocyte development|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex	nucleotidyltransferase activity|protein binding|translation initiation factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGATCTCCATGAGCTGGTCAT	0.453													35	97					0	0	1	0	0
CCDC163P	126661	broad.mit.edu	37	1	45960789	45960789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:45960789G>A	uc001cnw.2	-	5	745	c.380C>T	c.(379-381)TCC>TTC	p.S127F	CCDC163P_uc001cnt.2_RNA|CCDC163P_uc001cnu.2_RNA|CCDC163P_uc009vxt.1_3'UTR|CCDC163P_uc001cnv.2_RNA|CCDC163P_uc009vxu.1_RNA	NM_001102601	NP_001096071			hypothetical protein LOC126661												0						TCTGGGCATGGAGCTGAAAGA	0.473													18	62					0	0	1	0	0
TMEM69	51249	broad.mit.edu	37	1	46158923	46158923	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:46158923T>A	uc001cor.1	+	3	286	c.90T>A	c.(88-90)GAT>GAA	p.D30E		NM_016486	NP_057570	Q5SWH9	TMM69_HUMAN	transmembrane protein 69	30						integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GCAGAACAGATATACTTTCTC	0.378													134	199					0	0	1	0	0
MKNK1	8569	broad.mit.edu	37	1	47042306	47042306	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:47042306C>T	uc001cqb.2	-	5	499	c.255G>A	c.(253-255)GGG>GGA	p.G85G	MKNK1_uc010omd.1_Missense_Mutation_p.G15D|MKNK1_uc001cqc.2_Silent_p.G85G|MKNK1_uc009vyi.2_Silent_p.G85G|MKNK1_uc010ome.1_Missense_Mutation_p.G15D|MKNK1_uc009vyj.2_Silent_p.G30G|MKNK1_uc001cqd.2_Silent_p.G73G|MKNK1_uc010omf.1_Silent_p.G85G	NM_003684	NP_003675	Q9BUB5	MKNK1_HUMAN	MAP kinase-interacting serine/threonine kinase 1	85	Protein kinase.				intracellular protein kinase cascade|peptidyl-serine phosphorylation|regulation of translation	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(2)	2	Acute lymphoblastic leukemia(166;0.155)					TCCGACTGTGCCCTGCTTGTT	0.517													22	108					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47399629	47399629	+	Missense_Mutation	SNP	G	A	A	rs150346297		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:47399629G>A	uc001cqp.3	-	9	1262	c.1211C>T	c.(1210-1212)TCC>TTC	p.S404F	CYP4A11_uc001cqq.2_Missense_Mutation_p.S404F|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	404					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TTTGGGCAAGGAGCGCCCATC	0.557													14	49					0	0	1	0	0
CYP4X1	260293	broad.mit.edu	37	1	47515726	47515726	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:47515726G>A	uc001cqt.2	+	12	1660	c.1410G>A	c.(1408-1410)TTG>TTA	p.L470L	CYP4X1_uc001cqr.2_Silent_p.L469L|CYP4X1_uc001cqs.2_Silent_p.L405L	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	470						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						CCATTGCCTTGATTCTGCTCC	0.443													41	111					0	0	1	0	0
STIL	6491	broad.mit.edu	37	1	47746375	47746375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:47746375C>T	uc001crc.1	-	12	1910	c.1755G>A	c.(1753-1755)ATG>ATA	p.M585I	TAL1_uc001crb.1_Intron|STIL_uc010omn.1_Missense_Mutation_p.M538I|STIL_uc010omo.1_Missense_Mutation_p.M585I|STIL_uc001crd.1_Missense_Mutation_p.M585I|STIL_uc001cre.1_Missense_Mutation_p.M585I|STIL_uc001crf.1_Missense_Mutation_p.M198I|STIL_uc001crg.1_Missense_Mutation_p.M538I	NM_003035	NP_003026	Q15468	STIL_HUMAN	SCL/TAL1 interrupting locus isoform 2	585	PIN1-binding (By similarity).				cell proliferation|multicellular organismal development	centrosome|cytosol				lung(2)|skin(1)	3		Acute lymphoblastic leukemia(5;0.00116)|all_hematologic(5;0.00444)				TCTGAAGTTCCATTGGTCTTC	0.438													52	66					0	0	1	0	0
TTC39A	22996	broad.mit.edu	37	1	51768239	51768239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:51768239C>T	uc001csl.2	-	10	983	c.878G>A	c.(877-879)GGG>GAG	p.G293E	TTC39A_uc001csk.2_Missense_Mutation_p.G258E|TTC39A_uc010ond.1_Missense_Mutation_p.G230E|TTC39A_uc010one.1_Missense_Mutation_p.G257E|TTC39A_uc010onf.1_Missense_Mutation_p.G261E|TTC39A_uc001csn.2_Missense_Mutation_p.G292E|TTC39A_uc001cso.1_Missense_Mutation_p.G289E|TTC39A_uc009vyy.1_Missense_Mutation_p.G230E	NM_001080494	NP_001073963	Q5SRH9	TT39A_HUMAN	tetratricopeptide repeat domain 39A isoform 2	293							binding			skin(1)	1						GTTGACGTTCCCAGTACCTGG	0.562													3	9					0	0	1	0	0
NRD1	4898	broad.mit.edu	37	1	52343949	52343949	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:52343949G>A	uc001ctc.3	-	1	661	c.339C>T	c.(337-339)TAC>TAT	p.Y113Y	NRD1_uc001ctd.3_Silent_p.Y113Y|NRD1_uc001cte.2_5'Flank|NRD1_uc001ctf.2_Silent_p.Y113Y|NRD1_uc010ong.1_Intron|NRD1_uc009vzc.1_5'Flank	NM_002525	NP_002516	O43847	NRDC_HUMAN	nardilysin isoform a	113					cell migration|cell proliferation|neuromuscular junction development|positive regulation of membrane protein ectodomain proteolysis|proteolysis|regulation of endopeptidase activity	cell surface|cytosol	epidermal growth factor binding|metalloendopeptidase activity|zinc ion binding				0						TCCCTCACCGGTATTGCTTGG	0.592													23	45					0	0	1	0	0
SCP2	6342	broad.mit.edu	37	1	53420459	53420459	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:53420459G>A	uc001cur.1	+	5	500	c.379G>A	c.(379-381)GGA>AGA	p.G127R	SCP2_uc001cus.1_RNA|SCP2_uc010ono.1_Missense_Mutation_p.G46R|SCP2_uc010onp.1_Missense_Mutation_p.G103R|SCP2_uc009vzi.1_Missense_Mutation_p.G83R|SCP2_uc001cuq.1_Missense_Mutation_p.G83R	NM_002979	NP_002970	P22307	NLTP_HUMAN	sterol carrier protein 2 isoform 1 proprotein	127					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase|lipid transport	mitochondrion|nucleus|peroxisomal matrix	propanoyl-CoA C-acyltransferase activity|propionyl-CoA C2-trimethyltridecanoyltransferase activity|protein binding|sterol binding			breast(1)	1						GATGAGTAAGGGAAGCCTTGG	0.328													37	79					0	0	1	0	0
SLC1A7	6512	broad.mit.edu	37	1	53558273	53558273	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:53558273G>A	uc001cuy.2	-	7	1152	c.984C>T	c.(982-984)ATC>ATT	p.I328I	SLC1A7_uc001cux.2_5'Flank	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	328						integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	GGATGCCACGGATGAAGACGA	0.632													21	32					0	0	1	0	0
FAM151A	338094	broad.mit.edu	37	1	55078355	55078355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:55078355G>A	uc001cxn.2	-	5	736	c.604C>T	c.(604-606)CCC>TCC	p.P202S	ACOT11_uc001cxm.1_Intron	NM_176782	NP_788954	Q8WW52	F151A_HUMAN	hypothetical protein LOC338094	202						integral to membrane					0						GTAGCCTTGGGATACTTCTCC	0.567													37	59					0	0	1	0	0
C8A	731	broad.mit.edu	37	1	57340760	57340760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:57340760G>A	uc001cyo.2	+	3	442	c.310G>A	c.(310-312)GAG>AAG	p.E104K		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	104	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CCAGTGTAAGGAGACAGGTGA	0.333													15	30					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57476371	57476371	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:57476371G>A	uc001cys.1	-	16	2339	c.1665C>T	c.(1663-1665)AGC>AGT	p.S555S	DAB1_uc001cyt.1_Silent_p.S553S|DAB1_uc001cyq.1_Silent_p.S553S|DAB1_uc001cyr.1_Silent_p.S469S|DAB1_uc009vzw.1_Silent_p.S537S|DAB1_uc009vzx.1_Silent_p.S555S	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	588					cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCGCTATCTAGCTACCGGCCT	0.483													83	78					0	0	1	0	0
DAB1	1600	broad.mit.edu	37	1	57489228	57489228	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:57489228A>C	uc001cys.1	-	13	1545	c.871T>G	c.(871-873)TTC>GTC	p.F291V	DAB1_uc001cyt.1_Missense_Mutation_p.F289V|DAB1_uc001cyq.1_Missense_Mutation_p.F289V|DAB1_uc001cyr.1_Missense_Mutation_p.F205V|DAB1_uc009vzw.1_Missense_Mutation_p.F273V|DAB1_uc009vzx.1_Missense_Mutation_p.F291V	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	324				F -> L (in Ref. 1; AAC70068).	cell differentiation|nervous system development					skin(2)|ovary(1)	3						GCAGTGCCGAAAGGTACAGAA	0.512													7	14					0	0	1	0	0
CYP2J2	1573	broad.mit.edu	37	1	60377418	60377418	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:60377418G>A	uc001czq.2	-	4	551	c.546C>T	c.(544-546)TTC>TTT	p.F182F		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	182					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					TGTTGATCTTGAAATGAGGGT	0.448													29	77					0	0	1	0	0
C1orf87	127795	broad.mit.edu	37	1	60505798	60505799	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:60505798_60505799GG>AA	uc001czs.1	-	5	629_630	c.537_538CC>TT	c.(535-540)GCCCTG>GCTTTG	p.179_180AL>AL		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	179_180							calcium ion binding			ovary(1)|breast(1)	2						CTTCTGACCAGGGCAAGAAGAA	0.436													17	46					0	0	1	0	0
NFIA	4774	broad.mit.edu	37	1	61554129	61554129	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:61554129C>T	uc001czw.2	+	2	820	c.336C>T	c.(334-336)GGC>GGT	p.G112G	NFIA_uc001czy.2_Silent_p.G104G|NFIA_uc010oos.1_Silent_p.G157G|NFIA_uc001czv.2_Silent_p.G112G	NM_001134673	NP_001128145	Q12857	NFIA_HUMAN	nuclear factor I/A isoform 1	112	CTF/NF-I.				DNA replication|viral genome replication	cell junction|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)|skin(1)	2						ACCAGAAAGGCAAGATGCGAA	0.448													52	106					0	0	1	0	0
L1TD1	54596	broad.mit.edu	37	1	62675743	62675743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:62675743G>A	uc001dae.3	+	4	1599	c.1297G>A	c.(1297-1299)GAG>AAG	p.E433K		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	433	Glu-rich.									ovary(1)|skin(1)	2						ctcagggctagaggaggaaga	0.224													16	35					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740103	62740103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:62740103G>A	uc001dah.3	-	3	1050	c.673C>T	c.(673-675)CCA>TCA	p.P225S	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	225	Pro-rich.									ovary(3)|skin(2)|lung(1)	6						ACCAGCTCTGGAATCCGAGTT	0.567													24	35					0	0	1	0	0
KANK4	163782	broad.mit.edu	37	1	62740493	62740493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:62740493C>T	uc001dah.3	-	3	660	c.283G>A	c.(283-285)GTG>ATG	p.V95M	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	95										ovary(3)|skin(2)|lung(1)	6						TCCCTTGGCACCACGGGAGAC	0.607													61	91					0	0	1	0	0
SGIP1	84251	broad.mit.edu	37	1	67147806	67147806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:67147806C>T	uc001dcr.2	+	15	1286	c.1069C>T	c.(1069-1071)CCC>TCC	p.P357S	SGIP1_uc010opd.1_Intron|SGIP1_uc001dcs.2_Intron|SGIP1_uc001dct.2_Intron|SGIP1_uc009wat.2_Missense_Mutation_p.P124S	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	357	Pro-rich.				positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						CCCCCCAGGTCCCACAGGCCC	0.587													101	143					0	0	1	0	0
SGIP1	84251	broad.mit.edu	37	1	67206955	67206955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:67206955G>A	uc001dcr.2	+	24	2517	c.2300G>A	c.(2299-2301)GGG>GAG	p.G767E	SGIP1_uc010opd.1_Missense_Mutation_p.G367E|SGIP1_uc001dcs.2_Missense_Mutation_p.G367E|SGIP1_uc001dct.2_Missense_Mutation_p.G369E|SGIP1_uc009wat.2_Missense_Mutation_p.G561E|SGIP1_uc001dcu.2_Missense_Mutation_p.G272E	NM_032291	NP_115667	Q9BQI5	SGIP1_HUMAN	SH3-domain GRB2-like (endophilin) interacting	767					positive regulation of energy homeostasis|positive regulation of feeding behavior|positive regulation of receptor-mediated endocytosis|response to dietary excess	AP-2 adaptor complex	microtubule binding|phospholipid binding|SH3 domain binding			ovary(3)	3						TTTTTTTTAGGGGTGGGTTCT	0.383													17	50					0	0	1	0	0
RPE65	6121	broad.mit.edu	37	1	68896789	68896789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:68896789G>A	uc001dei.1	-	13	1463	c.1409C>T	c.(1408-1410)CCC>CTC	p.P470L		NM_000329	NP_000320	Q16518	RPE65_HUMAN	retinal pigment epithelium-specific protein	470			P -> L (in LCA2).		visual perception	cytoplasm|plasma membrane	all-trans-retinyl-palmitate hydrolase activity|metal ion binding|retinol isomerase activity			ovary(1)	1						AACAAAGATGGGTTCTGATGG	0.388													30	44					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75036823	75036823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:75036823G>A	uc001dgg.2	-	14	4790	c.4571C>T	c.(4570-4572)TCC>TTC	p.S1524F		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1524										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTTGTTGGGGGAAACATCTGC	0.512													28	136					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75072354	75072354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:75072354C>T	uc001dgg.2	-	10	1639	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E268K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	474	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTTGTCATTTCCTCCACAGCA	0.358													42	71					0	0	1	0	0
IFI44L	10964	broad.mit.edu	37	1	79101083	79101083	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:79101083A>T	uc010oro.1	+	5	964	c.785A>T	c.(784-786)GAC>GTC	p.D262V	IFI44L_uc010orp.1_5'UTR|IFI44L_uc010orq.1_5'UTR	NM_006820	NP_006811	Q53G44	IF44L_HUMAN	interferon-induced protein 44-like	262						cytoplasm					0						ATGTTGTGTGACACTATGGGG	0.373													27	82					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82408790	82408790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:82408790C>T	uc001dit.3	+	6	716	c.535C>T	c.(535-537)CGT>TGT	p.R179C	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.R179C|LPHN2_uc001div.2_Missense_Mutation_p.R179C|LPHN2_uc009wcd.2_Missense_Mutation_p.R179C	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	179	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GACTCCCTATCGTACCGATAC	0.398													35	42					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82434923	82434923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:82434923C>T	uc001dit.3	+	14	2715	c.2534C>T	c.(2533-2535)TCC>TTC	p.S845F	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.S845F|LPHN2_uc001div.2_Missense_Mutation_p.S845F|LPHN2_uc009wcd.2_Missense_Mutation_p.S845F|LPHN2_uc001diw.2_Missense_Mutation_p.S429F|LPHN2_uc009wce.1_5'Flank	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	858	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ATTGTCATTTCCCTTGTTTGC	0.398													42	121					0	0	1	0	0
TTLL7	79739	broad.mit.edu	37	1	84415548	84415548	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:84415548C>T	uc001djc.2	-	4	675	c.279G>A	c.(277-279)CAG>CAA	p.Q93Q	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_Intron|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	93	TTL.				cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		AATTTCCTACCTGATAATTTT	0.333													21	29					0	0	1	0	0
PRKACB	5567	broad.mit.edu	37	1	84647985	84647985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:84647985G>A	uc001djj.2	+	3	475	c.211G>A	c.(211-213)GCC>ACC	p.A71T	PRKACB_uc001djl.2_Missense_Mutation_p.A118T|PRKACB_uc010ort.1_Missense_Mutation_p.A78T|PRKACB_uc001djn.2_Missense_Mutation_p.A75T|PRKACB_uc010oru.1_Missense_Mutation_p.A59T|PRKACB_uc001djp.2_Missense_Mutation_p.A77T|PRKACB_uc001djq.2_Missense_Mutation_p.A74T|PRKACB_uc010orv.1_Missense_Mutation_p.A58T|PRKACB_uc001dji.2_Missense_Mutation_p.A71T|PRKACB_uc001djk.2_Missense_Mutation_p.A118T|PRKACB_uc009wcf.1_Missense_Mutation_p.A77T	NM_002731	NP_002722	P22694	KAPCB_HUMAN	cAMP-dependent protein kinase catalytic subunit	71	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein signaling, coupled to cAMP nucleotide second messenger|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|regulation of insulin secretion|synaptic transmission|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|magnesium ion binding|protein binding			lung(2)|ovary(1)	3				all cancers(265;0.00536)|Epithelial(280;0.0161)|OV - Ovarian serous cystadenocarcinoma(397;0.141)		ACAGTATTATGCCATGAAGAT	0.353													15	52					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87012829	87012829	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:87012829C>T	uc009wcs.2	+	1	71	c.27C>T	c.(25-27)TTC>TTT	p.F9F	CLCA4_uc009wct.2_5'UTR|CLCA4_uc009wcu.2_5'UTR	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	9						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GTTTTGTTTTCCTCTTAGTTC	0.368													29	94					0	0	1	0	0
BRDT	676	broad.mit.edu	37	1	92445271	92445271	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:92445271C>T	uc001dok.3	+	8	1593	c.1244C>T	c.(1243-1245)TCT>TTT	p.S415F	BRDT_uc001dol.3_Missense_Mutation_p.S415F|BRDT_uc010osz.1_Missense_Mutation_p.S419F|BRDT_uc009wdf.2_Missense_Mutation_p.S342F|BRDT_uc010ota.1_Missense_Mutation_p.S369F|BRDT_uc010otb.1_Missense_Mutation_p.S369F|BRDT_uc001dom.3_Missense_Mutation_p.S415F	NM_207189	NP_997072	Q58F21	BRDT_HUMAN	testis-specific bromodomain protein	415					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein serine/threonine kinase activity|transcription coactivator activity			stomach(2)|ovary(1)|lung(1)	4		all_lung(203;0.00531)|Lung NSC(277;0.0194)		all cancers(265;0.0228)|Epithelial(280;0.133)		TCTGATGATTCTGAAGATGAG	0.393													29	96					0	0	1	0	0
GCLM	2730	broad.mit.edu	37	1	94354692	94354692	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:94354692G>A	uc001dqg.1	-	7	972	c.679C>T	c.(679-681)CAA>TAA	p.Q227*		NM_002061	NP_002052	P48507	GSH0_HUMAN	glutamate-cysteine ligase regulatory protein	227					glutamate metabolic process|glutathione biosynthetic process|regulation of blood vessel size|response to drug|response to oxidative stress|xenobiotic metabolic process	cytosol|soluble fraction	glutamate-cysteine ligase catalytic subunit binding			ovary(1)	1		all_lung(203;0.000815)|Lung NSC(277;0.00363)		all cancers(265;0.00566)|GBM - Glioblastoma multiforme(16;0.0203)|Epithelial(280;0.131)	L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)	AGAGCTTCTTGGAAACTTGCT	0.413													8	16					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94502305	94502305	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:94502305G>A	uc001dqh.2	-	26	3957	c.3853C>T	c.(3853-3855)CTG>TTG	p.L1285L		NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1285	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CCCGCAAACAGAGGTCCTGAA	0.388													47	148					0	0	1	0	0
ABCA4	24	broad.mit.edu	37	1	94514481	94514481	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:94514481T>A	uc001dqh.2	-	18	2790	c.2686A>T	c.(2686-2688)AAG>TAG	p.K896*	ABCA4_uc010otn.1_Nonsense_Mutation_p.K822*	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	896	Cytoplasmic.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		GGCTCGGTCTTTTCCAGGGCT	0.522													22	56					0	0	1	0	0
PALMD	54873	broad.mit.edu	37	1	100155176	100155176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:100155176G>A	uc001dsg.2	+	7	1803	c.1360G>A	c.(1360-1362)GAT>AAT	p.D454N	PALMD_uc001dsf.2_Missense_Mutation_p.D454N	NM_017734	NP_060204	Q9NP74	PALMD_HUMAN	palmdelphin	454	Poly-Glu.				regulation of cell shape	cytoplasm|membrane				ovary(2)|pancreas(1)	3		all_epithelial(167;0.000813)|all_lung(203;0.0214)|Lung NSC(277;0.0216)		Epithelial(280;0.067)|all cancers(265;0.117)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)		GGAGGAGGAGGATGAAGGAGA	0.483													13	44					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103364265	103364265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:103364265C>T	uc001dul.2	-	56	4523	c.4205G>A	c.(4204-4206)GGA>GAA	p.G1402E	COL11A1_uc001duk.2_Missense_Mutation_p.G598E|COL11A1_uc001dum.2_Missense_Mutation_p.G1414E|COL11A1_uc001dun.2_Missense_Mutation_p.G1363E|COL11A1_uc009weh.2_Missense_Mutation_p.G1286E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1402	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACCAGGCTTTCCTGCAGGTCC	0.458													30	50					0	0	1	0	0
AKNAD1	254268	broad.mit.edu	37	1	109394539	109394539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:109394539C>T	uc001dwa.2	-	2	1017	c.748G>A	c.(748-750)GGC>AGC	p.G250S	AKNAD1_uc010ovb.1_Intron|AKNAD1_uc001dwb.2_RNA	NM_152763	NP_689976	Q5T1N1	AKND1_HUMAN	hypothetical protein LOC254268	250										ovary(3)	3						TGACCTTGGCCGTATTTGAAC	0.388													78	124					0	0	1	0	0
SYPL2	284612	broad.mit.edu	37	1	110022014	110022014	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:110022014C>T	uc001dxp.2	+	6	1029	c.663C>T	c.(661-663)ATC>ATT	p.I221I	SYPL2_uc010ovk.1_Silent_p.I157I	NM_001040709	NP_001035799	Q5VXT5	SYPL2_HUMAN	mitsugumin 29	221	Helical; (Potential).|MARVEL.					integral to membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0436)|READ - Rectum adenocarcinoma(129;0.0698)|Epithelial(280;0.0808)|all cancers(265;0.0869)|LUSC - Lung squamous cell carcinoma(189;0.231)		TTGGCTTTATCAACTTCTTCC	0.413													68	104					0	0	1	0	0
KCNA10	3744	broad.mit.edu	37	1	111061079	111061079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:111061079G>A	uc001dzt.1	-	1	719	c.331C>T	c.(331-333)CTC>TTC	p.L111F		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	111						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		TCTCCCAGGAGAGTCTCTGGG	0.473													35	48					0	0	1	0	0
KCNA2	3737	broad.mit.edu	37	1	111146998	111146998	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:111146998T>C	uc001dzu.2	-	2	903	c.407A>G	c.(406-408)GAA>GGA	p.E136G	KCNA2_uc009wfv.1_Missense_Mutation_p.E136G|KCNA2_uc009wfw.2_Missense_Mutation_p.E136G	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	136						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		AGGACGCTCTTCCTCCTTGAT	0.453													20	35					0	0	1	0	0
C1orf103	55791	broad.mit.edu	37	1	111494239	111494239	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:111494239G>A	uc001eaa.2	-	2	1523	c.1267C>T	c.(1267-1269)CAG>TAG	p.Q423*	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	423					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		GTCTCCATCTGGGAAGATTTA	0.403													68	209					0	0	1	0	0
DRAM2	128338	broad.mit.edu	37	1	111661467	111661467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:111661467G>A	uc001ead.3	-	8	910	c.653C>T	c.(652-654)TCC>TTC	p.S218F	DRAM2_uc001eae.3_Missense_Mutation_p.S218F|DRAM2_uc009wfy.2_RNA|DRAM2_uc001eaf.3_Missense_Mutation_p.S88F	NM_178454	NP_848549	Q6UX65	DRAM2_HUMAN	transmembrane protein 77	218	Helical; (Potential).				apoptosis|induction of apoptosis	Golgi apparatus|integral to membrane|lysosomal membrane					0						ACCAAAGAAGGAAAATGACAT	0.363													7	32					0	0	1	0	0
ADORA3	140	broad.mit.edu	37	1	112031365	112031365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:112031365C>T	uc001ebf.2	-	3	1506	c.739G>A	c.(739-741)GAT>AAT	p.D247N	ADORA3_uc001ebg.3_Missense_Mutation_p.D166N	NM_020683	NP_065734	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 1	Error:Variant_position_missing_in_P33765_after_alignment					activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	TCTGTAAAATCCATGTCATCC	0.532													15	28					0	0	1	0	0
CASQ2	845	broad.mit.edu	37	1	116310980	116310980	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:116310980A>G	uc001efx.3	-	1	447	c.183T>C	c.(181-183)TCT>TCC	p.S61S	CASQ2_uc010owu.1_Silent_p.S61S	NM_001232	NP_001223	O14958	CASQ2_HUMAN	cardiac calsequestrin 2 precursor	61					heart development|striated muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;1.25e-06)|all_epithelial(167;1.02e-06)|all_lung(203;8.03e-06)|Lung NSC(69;5.01e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CCTTATCTGAAGACACCGGCT	0.468													76	119					0	0	1	0	0
PTGFRN	5738	broad.mit.edu	37	1	117487313	117487313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:117487313C>T	uc001egv.1	+	3	568	c.431C>T	c.(430-432)TCC>TTC	p.S144F		NM_020440	NP_065173	Q9P2B2	FPRP_HUMAN	prostaglandin F2 receptor negative regulator	144	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi apparatus|integral to membrane	protein binding			liver(1)	1	Lung SC(450;0.225)	all_cancers(81;0.00104)|all_lung(203;8.97e-05)|all_epithelial(167;0.000139)|Lung NSC(69;0.000446)		Lung(183;0.0704)|LUSC - Lung squamous cell carcinoma(189;0.227)|Colorectal(144;0.248)		CTGGCCGACTCCCTGCACGTG	0.721													6	14					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118535096	118535096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:118535096G>A	uc001ehk.2	-	36	5422	c.5354C>T	c.(5353-5355)TCC>TTC	p.S1785F		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1785						cilium|flagellar axoneme|microtubule		p.S1785S(1)		upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		TACCTTAAGGGAAACCTGCAG	0.443													35	51					0	0	1	0	0
SPAG17	200162	broad.mit.edu	37	1	118558619	118558619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:118558619G>A	uc001ehk.2	-	29	4324	c.4256C>T	c.(4255-4257)TCC>TTC	p.S1419F		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1419						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GGCCTGAAAGGATAACAATGG	0.378													30	30					0	0	1	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056998	120056998	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:120056998G>A	uc001ehv.1	+	4	997	c.852G>A	c.(850-852)TGG>TGA	p.W284*	HSD3B1_uc001ehw.2_Nonsense_Mutation_p.W286*	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	284					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	ATTCCAGATGGAGCTTTCCTT	0.478													28	99					0	0	1	0	0
NBPF7	343505	broad.mit.edu	37	1	120385063	120385063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:120385063C>T	uc010oxk.1	-	2	952	c.331G>A	c.(331-333)GAG>AAG	p.E111K		NM_001047980	NP_001041445	P0C2Y1	NBPF7_HUMAN	hypothetical protein LOC343505	111	Potential.					cytoplasm				ovary(1)|skin(1)	2	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;3.66e-05)|Lung NSC(69;0.000192)|all_epithelial(167;0.0347)		Lung(183;0.0103)|LUSC - Lung squamous cell carcinoma(189;0.0544)		CACCTGAGCTCCTCAGCTTGC	0.542													122	171					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120468083	120468083	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:120468083C>T	uc001eik.2	-	25	4612	c.4356G>A	c.(4354-4356)GGG>GGA	p.G1452G		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1452	Negative regulatory region (NRR).|Extracellular (Potential).|LNR 1.				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		AACAGTCACCCCCATCCCACT	0.582			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				51	57					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145299837	145299837	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:145299837C>A	uc001end.3	+	6	921	c.886C>A	c.(886-888)CGC>AGC	p.R296S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.R296S|NBPF10_uc010oyi.1_5'Flank|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	296											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TGAGAAATTGCGCCCCCAGCT	0.488													46	395					4.00405e-42	4.10572e-42	1	1	0
ACP6	51205	broad.mit.edu	37	1	147127334	147127334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:147127334C>T	uc001epr.2	-	5	1053	c.589G>A	c.(589-591)GAT>AAT	p.D197N	ACP6_uc009wjj.1_Missense_Mutation_p.D154N	NM_016361	NP_057445	Q9NPH0	PPA6_HUMAN	acid phosphatase 6, lysophosphatidic precursor	197					lipid metabolic process	extracellular region|mitochondrion	acid phosphatase activity|protein binding			ovary(4)	4	all_hematologic(923;0.0276)					ACTTCTGAATCTGCTTCATCA	0.542													3	13					0	0	1	0	0
GJA8	2703	broad.mit.edu	37	1	147381082	147381082	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:147381082G>T	uc001epu.1	+	2	1063	c.1000G>T	c.(1000-1002)GAG>TAG	p.E334*		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	334	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					AGTGGAGGGCGAGGGGCCGCC	0.652													7	8					8.12818e-05	8.16419e-05	1	1	0
SF3B4	10262	broad.mit.edu	37	1	149895905	149895905	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:149895905C>T	uc001etj.1	-	5	966	c.915G>A	c.(913-915)GGG>GGA	p.G305G	SF3B4_uc001eti.1_Silent_p.G69G|SF3B4_uc001etk.1_Silent_p.G305G	NM_005850	NP_005841	Q15427	SF3B4_HUMAN	splicing factor 3b, subunit 4	305						nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Breast(34;0.0009)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			TCTGAGACATCCCTATGAAAA	0.363													5	7					0	0	1	0	0
OTUD7B	56957	broad.mit.edu	37	1	149916786	149916786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:149916786G>A	uc001etn.2	-	12	1858	c.1502C>T	c.(1501-1503)TCT>TTT	p.S501F		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	501					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			GTTAGCCACAGAATCTGCTCT	0.562													141	173					0	0	1	0	0
C1orf51	148523	broad.mit.edu	37	1	150257024	150257025	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:150257024_150257025CC>TT	uc001euh.2	+	5	675_676	c.539_540CC>TT	c.(538-540)ACC>ATT	p.T180I	C1orf51_uc001eui.2_Missense_Mutation_p.T92I|C1orf51_uc001euj.2_Missense_Mutation_p.T180I	NM_144697	NP_653298	Q8N365	CA051_HUMAN	hypothetical protein LOC148523	180											0	Lung NSC(24;7.29e-29)|Breast(34;0.00211)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			TACCTAGGAACCTTGCTACAGG	0.441													39	43					0	0	1	0	0
RPRD2	23248	broad.mit.edu	37	1	150445193	150445193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:150445193C>T	uc009wlr.2	+	11	3970	c.3769C>T	c.(3769-3771)CCT>TCT	p.P1257S	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.P1231S	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1257	Pro-rich.						protein binding			ovary(1)	1						TGCCCCACCCCCTCCTCCTGG	0.592													64	147					0	0	1	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150531535	150531535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:150531535G>A	uc001eux.2	+	16	2893	c.2657G>A	c.(2656-2658)GGA>GAA	p.G886E	ADAMTSL4_uc009wlw.2_Missense_Mutation_p.G909E|ADAMTSL4_uc010pcg.1_Missense_Mutation_p.G847E|ADAMTSL4_uc009wlx.2_Missense_Mutation_p.G49E	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	886	TSP type-1 4.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			GCAGGAGCAGGAACTGGGCAG	0.687													20	25					0	0	1	0	0
CTSS	1520	broad.mit.edu	37	1	150722505	150722505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:150722505G>A	uc001evn.2	-	6	903	c.770C>T	c.(769-771)CCT>CTT	p.P257L	CTSS_uc010pcj.1_Missense_Mutation_p.P207L|CTSS_uc001evo.1_Missense_Mutation_p.P257L	NM_004079	NP_004070	P25774	CATS_HUMAN	cathepsin S preproprotein	257					immune response|proteolysis	extracellular region|lysosome	cysteine-type endopeptidase activity				0	all_cancers(9;6.17e-52)|all_epithelial(9;9.7e-43)|all_lung(15;5.74e-35)|Lung NSC(24;2.09e-31)|Breast(34;0.00146)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0485)|Epithelial(6;5.02e-21)|all cancers(9;1.28e-20)|OV - Ovarian serous cystadenocarcinoma(6;1.09e-14)|BRCA - Breast invasive adenocarcinoma(12;0.00501)|LUSC - Lung squamous cell carcinoma(543;0.171)			GAAGAAAGAAGGATGACGCGC	0.323													18	47					0	0	1	0	0
SCNM1	79005	broad.mit.edu	37	1	151141550	151141550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:151141550C>T	uc001ewz.2	+	7	794	c.682C>T	c.(682-684)CCC>TCC	p.P228S	SCNM1_uc009wmn.2_RNA	NM_024041	NP_076946	Q9BWG6	SCNM1_HUMAN	sodium channel modifier 1	228					mRNA processing|RNA splicing	nucleus	metal ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|skin(1)	4	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			ACCTGATCTCCCCTTGGACTG	0.438													39	98					0	0	1	0	0
POGZ	23126	broad.mit.edu	37	1	151377413	151377413	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:151377413A>G	uc001eyd.1	-	19	4404	c.4098T>C	c.(4096-4098)TCT>TCC	p.S1366S	POGZ_uc001eye.1_Silent_p.S1313S|POGZ_uc010pdb.1_Silent_p.S1357S|POGZ_uc001eyf.1_Silent_p.S1322S|POGZ_uc010pdc.1_Silent_p.S1304S|POGZ_uc009wmv.1_Silent_p.S1271S|POGZ_uc010pdd.1_Silent_p.S857S	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	1366					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GTGGAGTGGAAGACTCAGAAT	0.483											OREG0003905	type=REGULATORY REGION|Gene=POGZ|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	41	108					0	0	1	0	0
RORC	6097	broad.mit.edu	37	1	151780050	151780050	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:151780050G>A	uc001ezh.2	-	11	1563	c.1455C>T	c.(1453-1455)ATC>ATT	p.I485I	RORC_uc001ezg.2_Silent_p.I464I|RORC_uc010pdo.1_Silent_p.I539I|RORC_uc010pdp.1_Silent_p.I473I|LINGO4_uc001ezf.1_5'Flank	NM_005060	NP_005051	P51449	RORG_HUMAN	RAR-related orphan receptor C isoform a	485	Ligand-binding.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GGTGCTGGAAGATCTGCAGCC	0.567													31	71					0	0	1	0	0
TCHHL1	126637	broad.mit.edu	37	1	152057883	152057883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152057883C>T	uc001ezo.1	-	3	2340	c.2275G>A	c.(2275-2277)GGT>AGT	p.G759S		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	759							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TTTTGGTCACCACCTTCTCCT	0.478													57	84					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152080059	152080059	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152080059C>T	uc001ezp.2	-	2	5634	c.5634G>A	c.(5632-5634)AGG>AGA	p.R1878R	TCHH_uc009wne.1_Silent_p.R1878R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1878	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCGTAATTTCCTTTCCCGTT	0.577													57	107					0	0	1	0	0
TCHH	7062	broad.mit.edu	37	1	152083878	152083878	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152083878C>T	uc001ezp.2	-	2	1815	c.1815G>A	c.(1813-1815)GAG>GAA	p.E605E	TCHH_uc009wne.1_Silent_p.E605E	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	605	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCCACCTCCTCGCGCTTCA	0.677													40	94					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128445	152128445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152128445G>A	uc001ezs.1	-	3	1195	c.1130C>T	c.(1129-1131)TCC>TTC	p.S377F		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	377	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCATAGTGGGAACTCTGACC	0.468													263	586					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152193173	152193173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152193173C>T	uc001ezt.1	-	3	1008	c.932G>A	c.(931-933)CGA>CAA	p.R311Q		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	311	3.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGACCCATGTCGGACGTGGCT	0.612													123	155					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152193774	152193774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152193774C>T	uc001ezt.1	-	3	407	c.331G>A	c.(331-333)GAA>AAA	p.E111K		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	111	1.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTTCTTGTTCCTCTTGGTGC	0.418													55	54					0	0	1	0	0
FLG	2312	broad.mit.edu	37	1	152278781	152278781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152278781C>T	uc001ezu.1	-	3	8617	c.8581G>A	c.(8581-8583)GCT>ACT	p.A2861T		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2861	Ser-rich.|Filaggrin 17.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGAGTGGAAGCTTCATGGTGA	0.577									Ichthyosis				204	588					0	0	1	0	0
CRNN	49860	broad.mit.edu	37	1	152383374	152383374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152383374C>T	uc001ezx.2	-	3	258	c.184G>A	c.(184-186)GAT>AAT	p.D62N		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	62	EF-hand.|high affinity (By similarity).				cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGTCTTCATCCAGCAGACGC	0.542													35	36					0	0	1	0	0
KPRP	448834	broad.mit.edu	37	1	152732182	152732182	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:152732182C>T	uc001fal.1	+	2	176	c.118C>T	c.(118-120)CCT>TCT	p.P40S		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	40	Gln-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGTTCAAGCCCCTTGTGAGAT	0.577													63	145					0	0	1	0	0
S100A14	57402	broad.mit.edu	37	1	153587777	153587777	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:153587777C>T	uc001fce.2	-	3	209	c.111G>A	c.(109-111)GGG>GGA	p.G37G	S100A16_uc001fcd.1_5'Flank	NM_020672	NP_065723	Q9HCY8	S10AE_HUMAN	S100 calcium binding protein A14	37	EF-hand 1.|1; low affinity (Potential).				calcium ion homeostasis|defense response to bacterium|positive regulation of granulocyte chemotaxis|positive regulation of monocyte chemotaxis|response to lipopolysaccharide|toll-like receptor 4 signaling pathway	cell junction|microtubule cytoskeleton|perinuclear region of cytoplasm	calcium ion binding|chemokine receptor binding				0	all_lung(78;1.84e-32)|Lung NSC(65;6.67e-31)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCGTCTCCTTCCCACCCTCCA	0.592													39	49					0	0	1	0	0
RAB13	5872	broad.mit.edu	37	1	153955017	153955017	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:153955017C>A	uc001fdt.1	-	6	568	c.474G>T	c.(472-474)GTG>GTT	p.V158V	RAB13_uc001fdu.1_3'UTR	NM_002870	NP_002861	P51153	RAB13_HUMAN	RAB13, member RAS oncogene family	158					cell adhesion|protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	cytoplasmic vesicle membrane|tight junction	GTP binding|GTPase activity				0	all_lung(78;3.05e-32)|Lung NSC(65;3.74e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			TCACCTCATCCACATTCATAC	0.463													53	79					1.19403e-26	1.21926e-26	1	1	0
PYGO2	90780	broad.mit.edu	37	1	154932194	154932194	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:154932194G>A	uc001fft.2	-	3	488	c.282C>T	c.(280-282)TTC>TTT	p.F94F		NM_138300	NP_612157	Q9BRQ0	PYGO2_HUMAN	pygopus homolog 2	94	Pro-rich.				Wnt receptor signaling pathway	nucleus	protein binding|zinc ion binding			skin(1)	1	all_epithelial(22;4.9e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GACTGCCAAGGAATGGAGGGG	0.642													21	24					0	0	1	0	0
ASH1L	55870	broad.mit.edu	37	1	155327174	155327174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:155327174C>T	uc009wqq.2	-	15	7483	c.7003G>A	c.(7003-7005)GAA>AAA	p.E2335K	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.E2330K	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2335					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TTGATATTTTCACTGGGTTCC	0.363													26	60					0	0	1	0	0
SEMA4A	64218	broad.mit.edu	37	1	156145008	156145008	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:156145008C>T	uc001fnl.2	+	13	1670	c.1566C>T	c.(1564-1566)ACC>ACT	p.T522T	SEMA4A_uc009wrq.2_Silent_p.T522T|SEMA4A_uc001fnm.2_Silent_p.T522T|SEMA4A_uc001fnn.2_Silent_p.T390T|SEMA4A_uc001fno.2_Silent_p.T522T	NM_022367	NP_071762	Q9H3S1	SEM4A_HUMAN	semaphorin B precursor	522	Extracellular (Potential).|PSI.				axon guidance	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					AGTCCCGAACCTGTTGCCTCC	0.617													142	304					0	0	1	0	0
BCAN	63827	broad.mit.edu	37	1	156622102	156622102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:156622102G>A	uc001fpp.2	+	8	1696	c.1360G>A	c.(1360-1362)GAG>AAG	p.E454K	BCAN_uc001fpo.2_Missense_Mutation_p.E454K	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	454	Glu-rich.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TAAGGCATTggaggaagaaga	0.348													17	53					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156834561	156834561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:156834561C>T	uc001fqh.1	+	3	385	c.329C>T	c.(328-330)GCC>GTC	p.A110V	NTRK1_uc001fqf.1_Missense_Mutation_p.A80V|NTRK1_uc009wsi.1_5'UTR|NTRK1_uc001fqi.1_Missense_Mutation_p.A110V|NTRK1_uc009wsk.1_Missense_Mutation_p.A110V	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	110	LRR 1.|Extracellular (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GCGCCAGATGCCTTCCATTTC	0.632			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			30	32					0	0	1	0	0
NTRK1	4914	broad.mit.edu	37	1	156851341	156851341	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:156851341G>A	uc001fqh.1	+	17	2354	c.2298G>A	c.(2296-2298)CGG>CGA	p.R766R	NTRK1_uc001fqf.1_Silent_p.R730R|NTRK1_uc009wsi.1_Silent_p.R465R|NTRK1_uc001fqi.1_Silent_p.R760R|NTRK1_uc009wsk.1_Silent_p.R763R	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	766	Cytoplasmic (Potential).|Protein kinase.			QR -> HG (in Ref. 9; CAA29888).	activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GCTGGCAGCGGGAGCCCCAGC	0.682			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			12	20					0	0	1	0	0
FCRL5	83416	broad.mit.edu	37	1	157490941	157490941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:157490941C>T	uc001fqu.2	-	11	2539	c.2381G>A	c.(2380-2382)GGA>GAA	p.G794E	FCRL5_uc009wsm.2_Missense_Mutation_p.G794E	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	794	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CGACCTATTTCCTAGGGTGAC	0.587													63	97					0	0	1	0	0
FCRL1	115350	broad.mit.edu	37	1	157771924	157771924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:157771924C>T	uc001frg.2	-	5	780	c.667G>A	c.(667-669)GAT>AAT	p.D223N	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.D223N|FCRL1_uc001fri.2_Missense_Mutation_p.D223N|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	223	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TCCAGCACATCCTCCACTGCA	0.592													37	41					0	0	1	0	0
OR10K2	391107	broad.mit.edu	37	1	158390564	158390564	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:158390564G>A	uc010pii.1	-	1	93	c.93C>T	c.(91-93)TTC>TTT	p.F31F		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	31	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AGAGGAGCAGGAAGATAACAA	0.527													50	82					0	0	1	0	0
OR10K1	391109	broad.mit.edu	37	1	158436237	158436237	+	Missense_Mutation	SNP	G	A	A	rs142494640		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:158436237G>A	uc010pij.1	+	1	886	c.886G>A	c.(886-888)GAA>AAA	p.E296K		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GAGAAATAAGGAATTCAAATC	0.294													44	83					0	0	1	0	0
SPTA1	6708	broad.mit.edu	37	1	158587379	158587379	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:158587379C>T	uc001fst.1	-	47	6748	c.6549_splice	c.e47-1	p.G2183_splice		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1						actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GAGCAATGATCTAGTTAAGAA	0.358													21	42					0	0	1	0	0
PYHIN1	149628	broad.mit.edu	37	1	158908923	158908923	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:158908923C>T	uc001ftb.2	+	4	710	c.465C>T	c.(463-465)TCC>TCT	p.S155S	PYHIN1_uc001fta.3_Silent_p.S155S|PYHIN1_uc001ftc.2_Silent_p.S146S|PYHIN1_uc001ftd.2_Silent_p.S155S|PYHIN1_uc001fte.2_Silent_p.S146S	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	155					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					GTAAGATGTCCAAAGAGCAGA	0.468													32	65					0	0	1	0	0
OR10J5	127385	broad.mit.edu	37	1	159505786	159505786	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:159505786C>T	uc010piw.1	-	1	12	c.12G>A	c.(10-12)AAG>AAA	p.K4K		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					CTGTGAAGTTCTTTCTCTTCA	0.343													32	45					0	0	1	0	0
FCRL6	343413	broad.mit.edu	37	1	159779289	159779289	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:159779289C>T	uc001fud.3	+	5	744	c.702C>T	c.(700-702)TCC>TCT	p.S234S	FCRL6_uc001fuc.2_Silent_p.S241S|FCRL6_uc009wsz.1_Silent_p.S139S|FCRL6_uc009wta.2_Silent_p.S234S	NM_001004310	NP_001004310	Q6DN72	FCRL6_HUMAN	Fc receptor-like 6 precursor	234	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3	all_hematologic(112;0.0597)					AGAGGGGCTCCCCTCCGATCC	0.597													34	66					0	0	1	0	0
CCDC19	25790	broad.mit.edu	37	1	159847190	159847190	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:159847190G>A	uc001fui.2	-	9	1125	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Silent_p.I284I|CCDC19_uc001ful.2_Silent_p.I284I|CCDC19_uc009wtc.1_Silent_p.I355I	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	369	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TCAAGCGTGCGATCTCCTTCT	0.542													167	237					0	0	1	0	0
CCDC19	25790	broad.mit.edu	37	1	159854279	159854279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:159854279C>T	uc001fui.2	-	7	862	c.844G>A	c.(844-846)GAG>AAG	p.E282K	CCDC19_uc009wtb.2_RNA|CCDC19_uc001fuj.2_RNA|CCDC19_uc001fuk.2_Missense_Mutation_p.E197K|CCDC19_uc001ful.2_Missense_Mutation_p.E197K|CCDC19_uc009wtc.1_Missense_Mutation_p.E268K	NM_012337	NP_036469	Q9UL16	CCD19_HUMAN	nasopharyngeal epithelium specific protein 1	282	Potential.					mitochondrion|soluble fraction				ovary(1)	1	all_hematologic(112;0.0597)		BRCA - Breast invasive adenocarcinoma(70;0.151)			TGCTCCTTCTCCTGCTCCCGC	0.522													94	204					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160091024	160091024	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:160091024C>T	uc001fvc.2	+	3	292	c.160C>T	c.(160-162)CAA>TAA	p.Q54*	ATP1A2_uc001fvb.2_Nonsense_Mutation_p.Q54*|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	54	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CCGCAAATACCAAGTGGACCT	0.423													109	242					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160105072	160105072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:160105072G>A	uc001fvc.2	+	15	2234	c.2102G>A	c.(2101-2103)GGA>GAA	p.G701E	ATP1A2_uc001fvb.2_Missense_Mutation_p.G701E|ATP1A2_uc001fvd.2_Missense_Mutation_p.G437E	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	701	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			ATTGTGGAGGGATGTCAGAGG	0.582													51	132					0	0	1	0	0
PVRL4	81607	broad.mit.edu	37	1	161049390	161049390	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:161049390G>A	uc001fxo.2	-	2	728	c.429C>T	c.(427-429)CTC>CTT	p.L143L		NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	143	Ig-like V-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CCAGCACTCGGAGCCGCAGCC	0.667													14	17					0	0	1	0	0
KLHDC9	126823	broad.mit.edu	37	1	161069161	161069161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:161069161G>A	uc001fxr.2	+	2	725	c.553G>A	c.(553-555)GCC>ACC	p.A185T	KLHDC9_uc001fxq.2_5'UTR|KLHDC9_uc001fxs.2_Missense_Mutation_p.A185T	NM_152366	NP_689579	Q8NEP7	KLDC9_HUMAN	kelch/ankyrin repeat containing cyclin A1	185											0	all_cancers(52;1.28e-19)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CTGCCACACAGCCTCACGCTC	0.542													22	40					0	0	1	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161161952	161161952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:161161952G>A	uc001fyt.3	-	8	2418	c.1990C>T	c.(1990-1992)CGC>TGC	p.R664C		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	664	Cys-rich.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CCAATGATGCGATCACAGCCA	0.547											OREG0013940	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	53	74					0	0	1	0	0
RGS4	5999	broad.mit.edu	37	1	163042242	163042242	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:163042242A>G	uc009wuy.2	+	2	613	c.102A>G	c.(100-102)GAA>GAG	p.E34E	RGS4_uc001gcl.3_Silent_p.E131E|RGS4_uc009wuz.2_Silent_p.E34E|RGS4_uc009wva.2_Silent_p.E16E	NM_005613	NP_005604	P49798	RGS4_HUMAN	regulator of G-protein signaling 4 isoform 2	34					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(2)|central_nervous_system(1)	3						ATTCCTGTGAACACAATTCTT	0.373													34	40					0	0	1	0	0
MAEL	84944	broad.mit.edu	37	1	166958650	166958650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:166958650G>A	uc001gdy.1	+	1	132	c.61G>A	c.(61-63)GAA>AAA	p.E21K	MAEL_uc001gdz.1_Missense_Mutation_p.E21K|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	21	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GAAGATCCCCGAACTACGGCG	0.597													5	13					0	0	1	0	0
RCSD1	92241	broad.mit.edu	37	1	167666954	167666954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:167666954G>A	uc001gem.2	+	6	1280	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K	RCSD1_uc010pli.1_Missense_Mutation_p.E335K	NM_052862	NP_443094	Q6JBY9	CPZIP_HUMAN	RCSD domain containing 1	365										ovary(2)|central_nervous_system(2)|skin(1)	5	all_hematologic(923;0.215)					CCCCAAGCAGGAAAAAGGCAA	0.617													3	12					0	0	1	0	0
F5	2153	broad.mit.edu	37	1	169510044	169510044	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:169510044G>A	uc001ggg.1	-	13	4429	c.4284C>T	c.(4282-4284)TCC>TCT	p.S1428S		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1428	2-28.|35 X 9 AA approximate tandem repeats of [TNP]-L-S-P-D-L-S-Q-T.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	CTGGGGAAAGGGACATCTGAC	0.527													27	62					0	0	1	0	0
KIFAP3	22920	broad.mit.edu	37	1	170007562	170007562	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:170007562A>G	uc001ggv.2	-	5	657	c.386T>C	c.(385-387)GTT>GCT	p.V129A	KIFAP3_uc010ply.1_Missense_Mutation_p.V51A|KIFAP3_uc001ggw.1_Missense_Mutation_p.V85A	NM_014970	NP_055785	Q92845	KIFA3_HUMAN	kinesin-associated protein 3	129					blood coagulation|plus-end-directed vesicle transport along microtubule|protein complex assembly|signal transduction	centrosome|condensed nuclear chromosome|cytosol|endoplasmic reticulum|kinesin II complex|spindle microtubule	kinesin binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AATGTTAGCAACTTCATCAAT	0.358													51	133					0	0	1	0	0
FMO1	2326	broad.mit.edu	37	1	171251218	171251218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:171251218C>T	uc009wvz.2	+	7	1065	c.929C>T	c.(928-930)TCT>TTT	p.S310F	FMO1_uc010pme.1_Missense_Mutation_p.S247F|FMO1_uc001ghl.2_Missense_Mutation_p.S310F|FMO1_uc001ghm.2_Missense_Mutation_p.S310F|FMO1_uc001ghn.2_Missense_Mutation_p.S310F	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	310					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AAGGAAAACTCTGTCATATTT	0.418													29	71					0	0	1	0	0
MYOC	4653	broad.mit.edu	37	1	171605128	171605128	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:171605128C>T	uc001ghu.2	-	3	1474	c.1452G>A	c.(1450-1452)AAG>AAA	p.K484K	MYOC_uc010pmk.1_Silent_p.K426K	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	484	Olfactomedin-like.				anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					CAAAGAGCTTCTTCTCCAGGG	0.478													27	53					0	0	1	0	0
MYOC	4653	broad.mit.edu	37	1	171607853	171607853	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:171607853C>T	uc001ghu.2	-	2	636	c.614G>A	c.(613-615)TGG>TAG	p.W205*	MYOC_uc010pmk.1_Nonsense_Mutation_p.W147*	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	205					anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					GTCCAAATTCCACGTAGAAAC	0.418													37	98					0	0	1	0	0
C1orf105	92346	broad.mit.edu	37	1	172390029	172390029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:172390029G>A	uc001gik.2	+	1	200	c.4G>A	c.(4-6)GAA>AAA	p.E2K	PIGC_uc001gii.1_Intron|PIGC_uc001gij.1_Intron	NM_139240	NP_640333	O95561	CA105_HUMAN	hypothetical protein LOC92346	2										skin(1)	1						CTGAAAGATGGAAAAAAGAGA	0.423													10	19					0	0	1	0	0
FASLG	356	broad.mit.edu	37	1	172628557	172628557	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:172628557G>A	uc001gis.2	+	1	373	c.216G>A	c.(214-216)AAG>AAA	p.K72K	FASLG_uc001git.2_Silent_p.K72K	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	72	Cytoplasmic (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						caccCCTGAAGAAGAGAGGGA	0.333													7	13					0	0	1	0	0
KLHL20	27252	broad.mit.edu	37	1	173702865	173702865	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:173702865C>T	uc001gjc.2	+	3	216	c.37C>T	c.(37-39)CGA>TGA	p.R13*	KLHL20_uc010pmr.1_Intron|KLHL20_uc009wwf.2_5'UTR|KLHL20_uc001gjd.2_Nonsense_Mutation_p.R13*	NM_014458	NP_055273	Q9Y2M5	KLH20_HUMAN	kelch-like 20	13					cytoskeleton organization|negative regulation of apoptosis|proteasomal ubiquitin-dependent protein catabolic process|response to interferon-alpha	actin cytoskeleton|cell surface|Cul3-RING ubiquitin ligase complex|Golgi apparatus|perinuclear region of cytoplasm|PML body	actin binding|interferon-gamma binding|ubiquitin-protein ligase activity			ovary(1)	1						TACCAACATTCGACCAGGAGA	0.473													64	71					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175362950	175362950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:175362950G>A	uc001gkp.1	-	4	1403	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	TNR_uc009wwu.1_Missense_Mutation_p.S441F|TNR_uc010pmz.1_3'UTR	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	441	Fibronectin type-III 2.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CCCATCGAAGGAAAATGAGAA	0.458													99	201					0	0	1	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738746	176738746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:176738746G>A	uc001gkz.2	+	16	5491	c.4327G>A	c.(4327-4329)GAA>AAA	p.E1443K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1443	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TTTCTAGAAGGAAATTCTGCT	0.453													31	68					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176905426	176905427	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:176905426_176905427GT>AA	uc001glc.2	-	15	2669_2670	c.2457_2458AC>TT	c.(2455-2460)AAACTC>AATTTC	p.819_820KL>NF	ASTN1_uc001glb.1_Missense_Mutation_p.819_820KL>NF|ASTN1_uc001gld.1_Missense_Mutation_p.819_820KL>NF|ASTN1_uc009wwx.1_Missense_Mutation_p.819_820KL>NF	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	827_828					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ACTTGGTTGAGTTTGATGTGGT	0.525													36	68					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	176934337	176934337	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:176934337G>A	uc001glc.2	-	9	1772	c.1560C>T	c.(1558-1560)GAC>GAT	p.D520D	ASTN1_uc001glb.1_Silent_p.D520D|ASTN1_uc001gld.1_Silent_p.D520D|ASTN1_uc009wwx.1_Silent_p.D520D	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	528					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CCAAAACCAGGTCAAAGCCTC	0.358													45	80					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249843	177249843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:177249843G>A	uc001glf.2	+	8	1843	c.1531G>A	c.(1531-1533)GAC>AAC	p.D511N	FAM5B_uc001glg.2_Missense_Mutation_p.D406N	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	511						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						AGACTTGCAGGACCTGGAGCT	0.592													24	57					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177249950	177249950	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:177249950G>A	uc001glf.2	+	8	1950	c.1638G>A	c.(1636-1638)TGG>TGA	p.W546*	FAM5B_uc001glg.2_Nonsense_Mutation_p.W441*	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	546						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						ACCCTTCCTGGAGGAAGCGCA	0.537													9	16					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177250409	177250409	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:177250409C>T	uc001glf.2	+	8	2409	c.2097C>T	c.(2095-2097)GAC>GAT	p.D699D	FAM5B_uc001glg.2_Silent_p.D594D	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	699						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTATCCGGGACTTAATTCTCC	0.493													75	108					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177250448	177250448	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:177250448C>T	uc001glf.2	+	8	2448	c.2136C>T	c.(2134-2136)TCC>TCT	p.S712S	FAM5B_uc001glg.2_Silent_p.S607S	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	712						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTCAAGGTTCCCAGGACTCTG	0.517													59	91					0	0	1	0	0
C1orf125	126859	broad.mit.edu	37	1	179337973	179337973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:179337973C>T	uc001gmo.2	+	3	263	c.136C>T	c.(136-138)CGT>TGT	p.R46C	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Intron|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.R46C	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	46											0						TATGGTGGATCGTTCAAAACT	0.378													15	46					0	0	1	0	0
CEP350	9857	broad.mit.edu	37	1	179983358	179983358	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:179983358C>T	uc001gnt.2	+	10	2153	c.1770C>T	c.(1768-1770)CAC>CAT	p.H590H	CEP350_uc009wxl.2_Silent_p.H589H|CEP350_uc001gnu.2_Silent_p.H424H	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	590						centrosome|nucleus|spindle				ovary(4)	4						AAAGGCGCCACTATGACACAG	0.448													6	12					0	0	1	0	0
QSOX1	5768	broad.mit.edu	37	1	180158693	180158693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:180158693C>T	uc001gnz.2	+	9	1099	c.1024C>T	c.(1024-1026)CCT>TCT	p.P342S	QSOX1_uc001gny.2_Missense_Mutation_p.P342S|QSOX1_uc001goa.2_Missense_Mutation_p.P342S	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	342					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						ACAGTATTTCCCTGGCCGGCC	0.478													150	236					0	0	1	0	0
KIAA1614	57710	broad.mit.edu	37	1	180905572	180905572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:180905572C>T	uc001gok.2	+	5	2594	c.2527C>T	c.(2527-2529)CCT>TCT	p.P843S	KIAA1614_uc001gol.1_Missense_Mutation_p.P464S|KIAA1614_uc001gom.1_Intron	NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	843										ovary(3)|skin(1)	4						TGTGGGTATCCCTCGGCCTCC	0.652													34	58					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181549757	181549757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:181549757C>T	uc001gow.2	+	6	961	c.796C>T	c.(796-798)CAC>TAC	p.H266Y	CACNA1E_uc009wxr.2_Missense_Mutation_p.H173Y|CACNA1E_uc009wxs.2_Missense_Mutation_p.H173Y	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	266	I.|Extracellular (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGACCCCCCTCACCCATGTGG	0.507													158	193					0	0	1	0	0
CACNA1E	777	broad.mit.edu	37	1	181701899	181701899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:181701899G>A	uc001gow.2	+	20	2842	c.2677G>A	c.(2677-2679)GAC>AAC	p.D893N	CACNA1E_uc009wxs.2_Missense_Mutation_p.D781N|CACNA1E_uc001gox.1_Missense_Mutation_p.D119N|CACNA1E_uc009wxt.2_Missense_Mutation_p.D119N	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	893	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGGAAACTGTGACCCGACTCA	0.677													27	53					0	0	1	0	0
RNASEL	6041	broad.mit.edu	37	1	182555844	182555844	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:182555844A>G	uc001gpj.1	-	1	265	c.98T>C	c.(97-99)GTT>GCT	p.V33A	RNASEL_uc009wxz.1_Missense_Mutation_p.V33A|RNASEL_uc001gpk.2_Missense_Mutation_p.V33A|RNASEL_uc009wya.1_Missense_Mutation_p.V33A	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	33	ANK 1.				mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						TTCGTTTTGAACAGCTTTAAT	0.522									Hereditary_Prostate_Cancer				67	91					0	0	1	0	0
LAMC1	3915	broad.mit.edu	37	1	183097779	183097779	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:183097779C>T	uc001gpy.3	+	18	3431	c.3174C>T	c.(3172-3174)AAC>AAT	p.N1058N		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor	1058	Potential.|Domain II and I.				axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TCATAGCAAACCTTGGAACTG	0.458													15	43					0	0	1	0	0
SMG7	9887	broad.mit.edu	37	1	183498158	183498158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:183498158C>T	uc001gqg.2	+	7	810	c.688C>T	c.(688-690)CTT>TTT	p.L230F	SMG7_uc010pob.1_Missense_Mutation_p.L259F|SMG7_uc001gqf.2_Missense_Mutation_p.L230F|SMG7_uc001gqh.2_Missense_Mutation_p.L230F|SMG7_uc001gqi.2_Missense_Mutation_p.L188F|SMG7_uc010poc.1_Missense_Mutation_p.L188F	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	230					mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GCAAAAAGCACTTTCTAAAGC	0.408													29	75					0	0	1	0	0
ARPC5	10092	broad.mit.edu	37	1	183599703	183599703	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:183599703G>A	uc001gql.2	-	3	477	c.286C>T	c.(286-288)CAA>TAA	p.Q96*		NM_005717	NP_005708	O15511	ARPC5_HUMAN	actin related protein 2/3 complex subunit 5	96					actin cytoskeleton organization|cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cell projection|cytoplasm	actin binding|structural constituent of cytoskeleton				0						TCCAGAGATTGAACTGCCTTT	0.408													41	67					0	0	1	0	0
RGS21	431704	broad.mit.edu	37	1	192321314	192321314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:192321314G>A	uc001gsh.2	+	4	400	c.226G>A	c.(226-228)GAA>AAA	p.E76K		NM_001039152	NP_001034241	Q2M5E4	RGS21_HUMAN	regulator of G-protein signaling 21	76	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|skin(1)	2						GATTTATTCTGAATTCATTGA	0.383													13	46					0	0	1	0	0
CFH	3075	broad.mit.edu	37	1	196642283	196642283	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:196642283G>A	uc001gtj.3	+	2	474	c.234G>A	c.(232-234)AGG>AGA	p.R78R	CFH_uc001gti.3_Silent_p.R78R|CFH_uc009wyw.2_Silent_p.R78R|CFH_uc009wyx.2_Silent_p.R78R	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	78	Sushi 1.		R -> G (in AHUS1).		complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						ATCCATTAAGGAAATGTCAGA	0.333													50	75					0	0	1	0	0
CFHR3	10878	broad.mit.edu	37	1	196748950	196748950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:196748950G>A	uc001gtl.2	+	3	364	c.277G>A	c.(277-279)GAA>AAA	p.E93K	CFHR3_uc001gtk.2_Missense_Mutation_p.E93K|CFHR3_uc010poy.1_Missense_Mutation_p.E93K|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	93	Sushi 2.					extracellular space					0						TCCTTATTTGGAAAATGGATA	0.318													9	12					0	0	1	0	0
CRB1	23418	broad.mit.edu	37	1	197390881	197390881	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:197390881C>T	uc001gtz.2	+	6	2058	c.1923C>T	c.(1921-1923)GGC>GGT	p.G641G	CRB1_uc010poz.1_Silent_p.G572G|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.G529G|CRB1_uc010ppb.1_Silent_p.G641G|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.G122G|CRB1_uc001gub.1_Silent_p.G290G	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	641	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CGTTTGTAGGCTGTCTCCAAG	0.428													59	145					0	0	1	0	0
FAM58B	339521	broad.mit.edu	37	1	200183241	200183241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:200183241G>A	uc009wzi.1	+	1	586	c.550G>A	c.(550-552)GGG>AGG	p.G184R		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	184					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CAGCTACCACGGGGGGCTGTG	0.662													13	32					0	0	1	0	0
KIF21B	23046	broad.mit.edu	37	1	200948673	200948673	+	Missense_Mutation	SNP	G	A	A	rs148681629		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:200948673G>A	uc001gvs.1	-	30	4467	c.4150C>T	c.(4150-4152)CGG>TGG	p.R1384W	KIF21B_uc001gvr.1_Missense_Mutation_p.R1371W|KIF21B_uc009wzl.1_Missense_Mutation_p.R1384W|KIF21B_uc010ppn.1_Missense_Mutation_p.R1371W	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1384	WD 2.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GTGAGAGTCCGAATGCACTTG	0.597													81	88					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201012412	201012412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:201012412G>A	uc001gvv.2	-	40	5272	c.5045C>T	c.(5044-5046)TCC>TTC	p.S1682F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1682	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CCACTACCTGGAAAACACATG	0.542											OREG0014067	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	92	209					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201047153	201047153	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:201047153G>A	uc001gvv.2	-	11	1700	c.1473C>T	c.(1471-1473)TAC>TAT	p.Y491Y		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	491	II.|Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TAGACATGAAGTACTGGCGCA	0.577													80	111					0	0	1	0	0
CACNA1S	779	broad.mit.edu	37	1	201081345	201081345	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:201081345C>T	uc001gvv.2	-	1	350	c.123G>A	c.(121-123)AGG>AGA	p.R41R		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	41	Cytoplasmic (Potential).|I.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGCAGGCCTTCCTCAGGGGGT	0.602													33	68					0	0	1	0	0
LAD1	3898	broad.mit.edu	37	1	201352246	201352246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:201352246C>T	uc001gwm.2	-	7	1577	c.1342G>A	c.(1342-1344)GAA>AAA	p.E448K		NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	448						basement membrane	structural molecule activity				0						CCCGCCAGTTCCTTCTCAAAG	0.592													66	127					0	0	1	0	0
MYBPH	4608	broad.mit.edu	37	1	203138400	203138400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:203138400C>T	uc001gzh.1	-	8	1270	c.1211G>A	c.(1210-1212)AGT>AAT	p.S404N	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	404	Ig-like C2-type 2.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		AGCTCGGACACTGCAGAACAA	0.632													9	39					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203677134	203677134	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:203677134T>G	uc001gzw.2	+	10	2343	c.1459T>G	c.(1459-1461)TAC>GAC	p.Y487D	ATP2B4_uc001gzv.2_Missense_Mutation_p.Y487D|ATP2B4_uc009xaq.2_Missense_Mutation_p.Y487D	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	487	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			GGGCATCCATTACCGTCAAAT	0.498													47	101					0	0	1	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204416613	204416613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:204416613C>T	uc001haw.2	-	16	2919	c.2440G>A	c.(2440-2442)GAA>AAA	p.E814K	PIK3C2B_uc010pqv.1_Missense_Mutation_p.E814K	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	814					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			CGCTGGTCTTCTTCCCGGAGG	0.562													26	52					0	0	1	0	0
CDK18	5129	broad.mit.edu	37	1	205492641	205492641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:205492641C>T	uc001hcr.2	+	3	380	c.161C>T	c.(160-162)CCC>CTC	p.P54L	CDK18_uc009xbk.1_RNA|CDK18_uc009xbl.1_RNA|CDK18_uc010pri.1_Silent_p.P74P|CDK18_uc001hcp.2_Missense_Mutation_p.P54L|CDK18_uc001hcq.2_Missense_Mutation_p.P54L|CDK18_uc010prj.1_5'UTR|CDK18_uc001hcs.2_5'UTR|CDK18_uc009xbm.1_5'UTR	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	52							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						GGCAGAGACCCCCCGCAGGAG	0.682													3	18					0	0	1	0	0
SRGAP2	23380	broad.mit.edu	37	1	206619584	206619584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:206619584C>T	uc001hdy.2	+	15	2110	c.1777C>T	c.(1777-1779)CCA>TCA	p.P593S	SRGAP2_uc010prt.1_Missense_Mutation_p.P516S|SRGAP2_uc001hdx.2_Missense_Mutation_p.P593S|SRGAP2_uc010pru.1_Missense_Mutation_p.P516S|SRGAP2_uc010prv.1_Missense_Mutation_p.P517S	NM_015326	NP_056141	O75044	FNBP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 2	680					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding				0	Breast(84;0.137)					GAACATCTTCCCAAGCCCCAG	0.582													92	160					0	0	1	0	0
FAIM3	9214	broad.mit.edu	37	1	207087359	207087359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:207087359G>A	uc001hey.2	-	2	297	c.118C>T	c.(118-120)CCT>TCT	p.P40S	FAIM3_uc010prz.1_Intron|FAIM3_uc010psa.1_5'UTR|FAIM3_uc010psb.1_Missense_Mutation_p.P40S	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	40	Ig-like.|Extracellular (Potential).				anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					TGCATTTCAGGAAGTGGGCAC	0.522													104	146					0	0	1	0	0
CR2	1380	broad.mit.edu	37	1	207641903	207641903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:207641903G>A	uc001hfw.2	+	3	571	c.477G>A	c.(475-477)ATG>ATA	p.M159I	CR2_uc001hfv.2_Missense_Mutation_p.M159I|CR2_uc009xch.2_Missense_Mutation_p.M159I|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	159	Sushi 3.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CACTTCCTATGATCCACAATG	0.418													29	43					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207700202	207700202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:207700202G>A	uc001hfy.2	+	6	1131	c.991G>A	c.(991-993)GAC>AAC	p.D331N	CR1_uc009xcl.1_Intron|CR1_uc001hfx.2_Missense_Mutation_p.D331N|CR1_uc009xcj.1_Intron|CR1_uc009xck.1_Missense_Mutation_p.D331N|CR1_uc010psh.1_5'Flank	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	331	Sushi 5.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GCCCGGCTACGACCTCAGAGG	0.572													97	21					0	0	1	0	0
IRF6	3664	broad.mit.edu	37	1	209974602	209974602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:209974602C>T	uc001hhq.1	-	3	420	c.157G>A	c.(157-159)GAA>AAA	p.E53K	IRF6_uc010psm.1_Intron|IRF6_uc009xct.1_Missense_Mutation_p.E53K	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	53	IRF tryptophan pentad repeat.				cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		ATGGTATTTTCCTCTTCTTGT	0.423										HNSCC(57;0.16)			21	59					0	0	1	0	0
SERTAD4	56256	broad.mit.edu	37	1	210415346	210415346	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:210415346T>C	uc001hhy.2	+	4	914	c.735T>C	c.(733-735)GAT>GAC	p.D245D	SERTAD4_uc009xcw.2_Silent_p.D245D	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	245							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		GCCAGGTGGATTTTGATGTAG	0.338													16	22					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210857019	210857019	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:210857019C>T	uc001hib.2	-	11	2744	c.2574G>A	c.(2572-2574)TCG>TCA	p.S858S	KCNH1_uc001hic.2_Silent_p.S831S	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	858	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GTGTCTCCATCGACTCAGCCT	0.592													38	98					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210977405	210977405	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:210977405G>A	uc001hib.2	-	8	1736	c.1566C>T	c.(1564-1566)TTC>TTT	p.F522F	KCNH1_uc001hic.2_Silent_p.F495F	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	522	Cytoplasmic (Potential).				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		AGAGCTTCAGGAAGTCCCGAA	0.458													31	36					0	0	1	0	0
LPGAT1	9926	broad.mit.edu	37	1	212002626	212002626	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:212002626A>G	uc001hiu.2	-	2	826	c.13T>C	c.(13-15)TTG>CTG	p.L5L	LPGAT1_uc001hiv.2_Silent_p.L5L	NM_014873	NP_055688	Q92604	LGAT1_HUMAN	lysophosphatidylglycerol acyltransferase 1	5					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.00773)|all cancers(67;0.0765)|Epithelial(68;0.114)		GCTTCTTCCAAAGTTATAGCC	0.438													65	112					0	0	1	0	0
FAM71A	149647	broad.mit.edu	37	1	212798699	212798699	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:212798699G>A	uc001hjk.2	+	1	884	c.480G>A	c.(478-480)CGG>CGA	p.R160R	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	160										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		TTGACACACGGGATGACCTCT	0.493													61	159					0	0	1	0	0
FAM71A	149647	broad.mit.edu	37	1	212799041	212799041	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:212799041G>A	uc001hjk.2	+	1	1226	c.822G>A	c.(820-822)GGG>GGA	p.G274G	uc010pth.1_RNA	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	274										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		CAACAGGGGGGATTAAAGAGg	0.388													29	54					0	0	1	0	0
PROX1	5629	broad.mit.edu	37	1	214170675	214170675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:214170675C>T	uc001hkh.2	+	2	1069	c.797C>T	c.(796-798)TCG>TTG	p.S266L	PROX1_uc001hkg.1_Missense_Mutation_p.S266L	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	266					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		AGCACTGATTCGGAAAATGAT	0.527													27	45					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214813291	214813291	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:214813291T>C	uc001hkm.2	+	12	1784	c.1610T>C	c.(1609-1611)TTA>TCA	p.L537S		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	537	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GAAACCATGTTAAGAGATCTT	0.353													50	104					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214818639	214818639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:214818639C>T	uc001hkm.2	+	13	5900	c.5726C>T	c.(5725-5727)TCG>TTG	p.S1909L		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2005	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AGGATCAGATCGGAGAAAGCT	0.413													34	52					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216496835	216496835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:216496835C>T	uc001hku.1	-	8	1918	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K	USH2A_uc001hkv.2_Missense_Mutation_p.E511K	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	511	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATGGTGATTTCGTCCACTGCA	0.378										HNSCC(13;0.011)			38	76					0	0	1	0	0
ESRRG	2104	broad.mit.edu	37	1	216850624	216850624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:216850624G>A	uc001hkw.1	-	2	432	c.266C>T	c.(265-267)CCT>CTT	p.P89L	ESRRG_uc001hky.1_Missense_Mutation_p.P66L|ESRRG_uc009xdp.1_Missense_Mutation_p.P66L|ESRRG_uc001hkz.1_Missense_Mutation_p.P66L|ESRRG_uc010puc.1_Missense_Mutation_p.P66L|ESRRG_uc001hla.1_Missense_Mutation_p.P66L|ESRRG_uc001hlb.1_Missense_Mutation_p.P66L|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Missense_Mutation_p.P66L|ESRRG_uc001hld.1_Missense_Mutation_p.P66L|ESRRG_uc001hkx.1_Missense_Mutation_p.P94L|ESRRG_uc009xdo.1_Missense_Mutation_p.P66L|ESRRG_uc001hle.1_Missense_Mutation_p.P66L	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	89					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	TCCCAGGATAGGAGCAGAAGG	0.537													57	90					0	0	1	0	0
GPATCH2	55105	broad.mit.edu	37	1	217793777	217793777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:217793777C>T	uc001hlf.1	-	2	217	c.121G>A	c.(121-123)GAG>AAG	p.E41K	GPATCH2_uc001hlg.3_Missense_Mutation_p.E41K	NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	41						intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		CGAGCTTGCTCTGAGCTCTCT	0.448													24	69					0	0	1	0	0
BPNT1	10380	broad.mit.edu	37	1	220247342	220247342	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:220247342C>T	uc001hma.2	-	3	364	c.192G>A	c.(190-192)CGG>CGA	p.R64R	BPNT1_uc010pug.1_Silent_p.R9R|BPNT1_uc010puh.1_Silent_p.R64R|BPNT1_uc001hmb.3_Silent_p.R64R	NM_006085	NP_006076	O95861	BPNT1_HUMAN	3'(2'), 5'-bisphosphate nucleotidase 1	64					3'-phosphoadenosine 5'-phosphosulfate metabolic process|nervous system development|xenobiotic metabolic process	cytosol	3'(2'),5'-bisphosphate nucleotidase activity			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0558)		TGGGGAATTTCCGGGCCAATG	0.393													79	131					0	0	1	0	0
RAB3GAP2	25782	broad.mit.edu	37	1	220340700	220340700	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:220340700C>A	uc010puk.1	-	26	3186	c.3022G>T	c.(3022-3024)GAG>TAG	p.E1008*	RAB3GAP2_uc001hmf.2_RNA|RAB3GAP2_uc001hmg.2_Nonsense_Mutation_p.E588*|RAB3GAP2_uc001hmh.2_5'Flank	NM_012414	NP_036546	Q9H2M9	RBGPR_HUMAN	rab3 GTPase-activating protein, non-catalytic	1008					intracellular protein transport	cytoplasm|soluble fraction	GTPase activator activity|protein heterodimerization activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(131;0.0443)		ACATCGAGCTCAAGGCTACAA	0.408													11	48					0.000308642	0.000309798	1	1	0
MARK1	4139	broad.mit.edu	37	1	220805599	220805599	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:220805599C>T	uc001hmn.3	+	11	1663	c.1066C>T	c.(1066-1068)CAG>TAG	p.Q356*	MARK1_uc009xdw.2_Nonsense_Mutation_p.Q356*|MARK1_uc010pun.1_Nonsense_Mutation_p.Q356*|MARK1_uc001hmm.3_Nonsense_Mutation_p.Q334*	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	356	UBA.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		CTTAATAAATCAGAAGTATGA	0.303													46	161					0	0	1	0	0
DUSP10	11221	broad.mit.edu	37	1	221912312	221912312	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:221912312G>A	uc001hmy.1	-	2	957	c.775C>T	c.(775-777)CTG>TTG	p.L259L	DUSP10_uc001hmx.1_5'Flank|DUSP10_uc001hmz.1_Intron	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	259	Rhodanese.				inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		TCTCTCTTCAGGGACTCGAGG	0.483													70	131					0	0	1	0	0
TLR5	7100	broad.mit.edu	37	1	223285825	223285825	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:223285825G>A	uc001hnv.1	-	4	995	c.549C>T	c.(547-549)TTC>TTT	p.F183F	TLR5_uc001hnw.1_Silent_p.F183F	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	183	LRR 4.|Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		CACATACAAGGAATATTTGGT	0.423													16	63					0	0	1	0	0
NVL	4931	broad.mit.edu	37	1	224495718	224495718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:224495718G>A	uc001hok.2	-	6	633	c.590C>T	c.(589-591)CCT>CTT	p.P197L	NVL_uc001hol.2_Missense_Mutation_p.P91L|NVL_uc010pvd.1_Intron|NVL_uc010pve.1_Intron|NVL_uc010pvf.1_RNA	NM_002533	NP_002524	O15381	NVL_HUMAN	nuclear VCP-like isoform 1	197						aggresome|cytoplasm|nucleolus	ATP binding|nucleoside-triphosphatase activity			skin(2)	2				GBM - Glioblastoma multiforme(131;0.00501)		TGGCTTCTTAGGATTACTTTT	0.348													17	66					0	0	1	0	0
WDR26	80232	broad.mit.edu	37	1	224581617	224581617	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:224581617T>C	uc001hop.3	-	13	1798	c.1432A>G	c.(1432-1434)ATT>GTT	p.I478V	WDR26_uc001hoq.3_Missense_Mutation_p.I462V|WDR26_uc010pvh.1_Missense_Mutation_p.I185V	NM_025160	NP_079436	Q9H7D7	WDR26_HUMAN	WD repeat domain 26 isoform a	625	WD 6.					cytoplasm|nucleus					0				GBM - Glioblastoma multiforme(131;0.0104)		ATGGATGGAATCTGTGGGTTC	0.473													47	47					0	0	1	0	0
C1orf55	163859	broad.mit.edu	37	1	226173191	226173191	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:226173191A>G	uc001hpu.3	-	7	1221	c.1168T>C	c.(1168-1170)TTC>CTC	p.F390L	C1orf55_uc001hpv.2_Intron	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	390										lung(1)	1	Breast(184;0.197)					ACAGAGGTGAACGCCAATAAA	0.428													36	68					0	0	1	0	0
ITPKB	3707	broad.mit.edu	37	1	226923768	226923768	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:226923768C>T	uc010pvo.1	-	2	1732	c.1392G>A	c.(1390-1392)GGG>GGA	p.G464G	ITPKB_uc001hqh.2_Silent_p.G464G	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	464							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				CCTCCACATTCCCGGTCCCCG	0.652													18	85					0	0	1	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227333254	227333254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:227333254G>A	uc001hqr.2	-	8	2022	c.1079C>T	c.(1078-1080)CCA>CTA	p.P360L	CDC42BPA_uc001hqs.2_Missense_Mutation_p.P360L|CDC42BPA_uc009xes.2_Missense_Mutation_p.P360L|CDC42BPA_uc010pvs.1_Missense_Mutation_p.P360L	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	360	AGC-kinase C-terminal.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				ACTAACTTCTGGAATATAAGG	0.358													46	61					0	0	1	0	0
JMJD4	65094	broad.mit.edu	37	1	227923018	227923019	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:227923018_227923019GG>AA	uc001hrb.2	-	1	94_95	c.94_95CC>TT	c.(94-96)CCG>TTG	p.P32L	SNAP47_uc001hqz.2_Intron|SNAP47_uc001hra.2_Intron|SNAP47_uc001hrd.2_5'UTR|SNAP47_uc001hre.2_5'UTR|SNAP47_uc001hrf.2_5'UTR|JMJD4_uc001hrc.2_Missense_Mutation_p.P32L	NM_023007	NP_075383	Q9H9V9	JMJD4_HUMAN	jumonji domain containing 4 isoform 1	32											0		Prostate(94;0.0885)				CACTTCCGCCGGAGCGGAAACG	0.718													10	13					0	0	1	0	0
C1orf124	83932	broad.mit.edu	37	1	231475563	231475563	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:231475563C>T	uc001hur.2	+	2	718	c.270C>T	c.(268-270)ATC>ATT	p.I90I	EXOC8_uc001huq.2_5'Flank|C1orf124_uc001hus.2_Silent_p.I90I|C1orf124_uc001hut.2_Silent_p.I90I	NM_032018	NP_114407	Q9H040	CA124_HUMAN	hypothetical protein LOC83932 isoform a	90					DNA repair	nuclear speck	DNA binding|metal ion binding				0	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				TGTGTTCCATCCGTCTCAGCG	0.418													61	101					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232650179	232650179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:232650179C>T	uc001hvg.2	-	1	1065	c.907G>A	c.(907-909)GAA>AAA	p.E303K		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	303					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				TTGAAAGTTTCGTGCTCACTT	0.493													19	36					0	0	1	0	0
C1orf57	84284	broad.mit.edu	37	1	233105701	233105701	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:233105701A>G	uc001hvj.1	+	4	428	c.341A>G	c.(340-342)GAG>GGG	p.E114G	C1orf57_uc001hvi.2_Missense_Mutation_p.E114G|C1orf57_uc009xft.1_Intron	NM_032324	NP_115700	Q9BSD7	NTPCR_HUMAN	nucleoside-triphosphatase C1orf57	114	ATP (Probable).			E->T: Reduced activity, especially towards ATP, GTP and TTP.			ATP binding|nucleoside-triphosphatase activity|nucleotide phosphatase activity|transferase activity				0		all_cancers(173;0.0818)|Prostate(94;0.137)				GTCATCGATGAGATTGGGAAG	0.502													41	69					0	0	1	0	0
SLC35F3	148641	broad.mit.edu	37	1	234458822	234458822	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:234458822C>T	uc001hwa.1	+	7	1327	c.1099C>T	c.(1099-1101)CTG>TTG	p.L367L	SLC35F3_uc001hvy.1_Silent_p.L436L	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	367	Helical; (Potential).				transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CATCATCGGCCTGGGTTTTCT	0.552													19	59					0	0	1	0	0
LGALS8	3964	broad.mit.edu	37	1	236703877	236703877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:236703877G>A	uc001hxz.1	+	6	740	c.359G>A	c.(358-360)GGA>GAA	p.G120E	LGALS8_uc001hxw.1_Missense_Mutation_p.G120E|LGALS8_uc001hxy.1_Missense_Mutation_p.G120E|LGALS8_uc009xgg.1_RNA|LGALS8_uc001hya.1_Missense_Mutation_p.G120E|LGALS8_uc001hyb.1_Missense_Mutation_p.G120E|LGALS8_uc001hyc.1_Intron	NM_201543	NP_963837	O00214	LEG8_HUMAN	galectin-8 isoform b	120	Galectin 1.					cytoplasm|extracellular space	sugar binding			ovary(1)	1	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.0253)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			GCTGTAAATGGAAAACATACT	0.398													36	110					0	0	1	0	0
HEATR1	55127	broad.mit.edu	37	1	236748463	236748463	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:236748463T>A	uc001hyd.1	-	17	2228	c.2103A>T	c.(2101-2103)AAA>AAT	p.K701N	HEATR1_uc009xgh.1_5'Flank	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	701					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			GAAACGTTACTTTCTGCTTCA	0.393													35	51					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237632412	237632412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:237632412C>T	uc001hyl.1	+	17	1753	c.1633C>T	c.(1633-1635)CGT>TGT	p.R545C		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	545	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TAGAGGAAATCGTAAAAACTG	0.378													16	29					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240255646	240255646	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:240255646G>A	uc010pyd.1	+	1	462	c.237G>A	c.(235-237)CGG>CGA	p.R79R	FMN2_uc010pye.1_Silent_p.R79R	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	79					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCAACCTGCGGATCAGGAAGA	0.552													15	14					0	0	1	0	0
FMN2	56776	broad.mit.edu	37	1	240371148	240371148	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:240371148C>T	uc010pyd.1	+	5	3261	c.3036C>T	c.(3034-3036)CCC>CCT	p.P1012P	FMN2_uc010pye.1_Silent_p.P1016P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	1012	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			CCCCTCCTCCCCCTCTTCCCG	0.741													19	96					0	0	1	0	0
KMO	8564	broad.mit.edu	37	1	241753347	241753347	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:241753347T>A	uc009xgp.2	+	13	1197	c.1132T>A	c.(1132-1134)TTT>ATT	p.F378I	KMO_uc001hyy.2_Intron|KMO_uc009xgo.1_Missense_Mutation_p.F378I	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	378					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			CTGGTTCATTTTTCAGAAGAA	0.393													32	95					0	0	1	0	0
EXO1	9156	broad.mit.edu	37	1	242023858	242023858	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:242023858A>G	uc001hzh.2	+	9	1336	c.796A>G	c.(796-798)ACG>GCG	p.T266A	EXO1_uc001hzi.2_Missense_Mutation_p.T266A|EXO1_uc001hzj.2_Missense_Mutation_p.T266A|EXO1_uc009xgq.2_Missense_Mutation_p.T266A	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	266	Interaction with MSH3.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			GATGAATATCACGGTACCAGA	0.358								Direct_reversal_of_damage|Editing_and_processing_nucleases					70	80					0	0	1	0	0
KIF26B	55083	broad.mit.edu	37	1	245852057	245852057	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:245852057C>T	uc001ibf.1	+	12	6212	c.5772C>T	c.(5770-5772)TCC>TCT	p.S1924S	KIF26B_uc001ibg.1_Silent_p.S1542S|KIF26B_uc001ibh.1_Silent_p.S1166S	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1924					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			ACAGCAGCTCCGTGGGCGGCA	0.716													8	28					0	0	1	0	0
ZNF124	7678	broad.mit.edu	37	1	247320170	247320170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:247320170G>A	uc001ick.2	-	4	893	c.754C>T	c.(754-756)CAT>TAT	p.H252Y	ZNF124_uc001ici.2_Intron|ZNF124_uc001icj.1_Missense_Mutation_p.H190Y	NM_003431	NP_003422	Q15973	ZN124_HUMAN	zinc finger protein 124	252	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1	all_cancers(71;5.07e-05)|all_epithelial(71;8.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00739)			GCCTTTATATGTCCTTGCAAG	0.433													32	80					0	0	1	0	0
ZNF496	84838	broad.mit.edu	37	1	247473702	247473702	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:247473702G>A	uc001ico.2	-	6	1173	c.708C>T	c.(706-708)TCC>TCT	p.S236S	ZNF496_uc009xgv.2_Silent_p.S272S|ZNF496_uc001icp.2_Silent_p.S236S|ZNF496_uc001icq.1_Silent_p.S11S|ZNF496_uc010pyv.1_Silent_p.S236S	NM_032752	NP_116141	Q96IT1	ZN496_HUMAN	zinc finger protein 496	236	KRAB.				positive regulation of transcription, DNA-dependent|viral reproduction		DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(71;0.000136)|all_epithelial(71;2.62e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0607)|Lung NSC(105;0.0661)		OV - Ovarian serous cystadenocarcinoma(106;0.00703)			GATCTAGAAGGGACCAATCCT	0.507													15	49					0	0	1	0	0
OR2W3	343171	broad.mit.edu	37	1	248058928	248058928	+	Silent	SNP	C	T	T	rs147416022	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248058928C>T	uc001idp.1	+	3	309	c.40C>T	c.(40-42)CTA>TTA	p.L14L	OR2W3_uc010pzb.1_Silent_p.L14L	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCATTTCATCCTACTGGGATT	0.438													28	36					0	0	1	0	0
OR2L8	391190	broad.mit.edu	37	1	248112192	248112192	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248112192C>T	uc001idt.1	+	1	33	c.33C>T	c.(31-33)TTC>TTT	p.F11F	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			CAACTGATTTCATCTTATTGG	0.343													33	78					0	0	1	0	0
OR2L2	26246	broad.mit.edu	37	1	248201572	248201572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248201572G>A	uc001idw.2	+	1	99	c.3G>A	c.(1-3)ATG>ATA	p.M1I	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			AATTCCCCATGGAAAATTACA	0.289													31	66					0	0	1	0	0
OR2L3	391192	broad.mit.edu	37	1	248224630	248224630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248224630C>T	uc001idx.1	+	1	647	c.647C>T	c.(646-648)TCC>TTC	p.S216F	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ATTTCATGTTCCTATGGCCGG	0.502													55	20					0	0	1	0	0
OR2M3	127062	broad.mit.edu	37	1	248366914	248366914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248366914C>T	uc010pzg.1	+	1	545	c.545C>T	c.(544-546)CCC>CTC	p.P182L		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	182	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGTGACTTCCCCTCCCTACTA	0.413													69	199					0	0	1	0	0
OR2M7	391196	broad.mit.edu	37	1	248487415	248487415	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248487415G>A	uc010pzk.1	-	1	456	c.456C>T	c.(454-456)GGC>GGT	p.G152G		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATCTGTAGAGCCCAGGATCC	0.478													79	184					0	0	1	0	0
OR2T1	26696	broad.mit.edu	37	1	248569723	248569723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248569723C>T	uc010pzm.1	+	1	428	c.428C>T	c.(427-429)TCC>TTC	p.S143F		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	143	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGGACCATTTCCTTTGTGGGG	0.473													54	130					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616729	248616729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248616729C>T	uc001iek.1	+	1	631	c.631C>T	c.(631-633)CCT>TCT	p.P211S		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GCTGCTTATCCCTCTATCTGT	0.532													30	146					0	0	1	0	0
OR2T5	401993	broad.mit.edu	37	1	248652009	248652009	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:248652009G>A	uc001iem.1	+	1	120	c.120G>A	c.(118-120)CTG>CTA	p.L40L		NM_001004697	NP_001004697	Q6IEZ7	OR2T5_HUMAN	olfactory receptor, family 2, subfamily T,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGTTTTCCTGAAGGCGTTGT	0.478													33	91					0	0	1	0	0
CALML5	51806	broad.mit.edu	37	10	5541147	5541147	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:5541147G>A	uc001iic.2	-	1	387	c.255C>T	c.(253-255)GTC>GTT	p.V85V		NM_017422	NP_059118	Q9NZT1	CALL5_HUMAN	calmodulin-like 5	85	EF-hand 3.				epidermis development|signal transduction		calcium ion binding|protein binding				0						CGCGGAAGGCGACCTGCAGGT	0.697													13	33					0	0	1	0	0
CALML3	810	broad.mit.edu	37	10	5567446	5567446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:5567446G>A	uc001iie.1	+	1	523	c.398G>A	c.(397-399)GGA>GAA	p.G133E	uc001iid.1_5'Flank	NM_005185	NP_005176	P27482	CALL3_HUMAN	calmodulin-like 3	133	4.|EF-hand 4.						calcium ion binding				0						GACACGGACGGAGACGGACAG	0.672													16	29					0	0	1	0	0
IL2RA	3559	broad.mit.edu	37	10	6060045	6060045	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:6060045G>A	uc001iiz.1	-	7	924	c.765C>T	c.(763-765)CTC>CTT	p.L255L	IL2RA_uc009xih.1_Silent_p.L183L	NM_000417	NP_000408	P01589	IL2RA_HUMAN	interleukin 2 receptor, alpha chain precursor	255	Helical; (Potential).				cell proliferation	integral to membrane	interleukin-2 receptor activity			ovary(1)|skin(1)	2					Aldesleukin(DB00041)|Basiliximab(DB00074)|Daclizumab(DB00111)|Denileukin diftitox(DB00004)	GCCCACTCAGGAGGAGGACGC	0.617													5	36					0	0	1	0	0
TAF3	83860	broad.mit.edu	37	10	8006910	8006910	+	Silent	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:8006910G>T	uc010qbd.1	+	3	1437	c.1437G>T	c.(1435-1437)CTG>CTT	p.L479L		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	479					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						AAGCAAAACTGGGAACACCTT	0.488													42	72					1.38658e-30	1.41882e-30	1	1	0
UPF2	26019	broad.mit.edu	37	10	11984744	11984744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:11984744C>T	uc001ila.2	-	17	3772	c.3298G>A	c.(3298-3300)GGT>AGT	p.G1100S	UPF2_uc001ilb.2_Missense_Mutation_p.G1100S|UPF2_uc001ilc.2_Missense_Mutation_p.G1100S	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	1100	Sufficient for interaction with UPF1 C- terminus.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				TTAAGTCCACCGCCTTTAATC	0.333													19	41					0	0	1	0	0
BEND7	222389	broad.mit.edu	37	10	13541953	13541953	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:13541953C>T	uc001imm.2	-	3	414	c.117G>A	c.(115-117)CTG>CTA	p.L39L	BEND7_uc001imo.3_Silent_p.L39L	NM_152751	NP_689964	Q8N7W2	BEND7_HUMAN	BEN domain containing 7 isoform 1	91							protein binding			ovary(1)|breast(1)	2						AGACTAAATCCAGGTCCTGGG	0.537													24	55					0	0	1	0	0
FAM188A	80013	broad.mit.edu	37	10	15858885	15858885	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:15858885G>A	uc001iod.1	-	10	1052	c.831C>T	c.(829-831)TTC>TTT	p.F277F	FAM188A_uc001ioe.1_Silent_p.F104F|FAM188A_uc001iof.1_Silent_p.F277F	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	277					apoptosis	nucleus	calcium ion binding			ovary(1)	1						TCCAAATAGGGAATTTTGGAG	0.323													23	44					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21108397	21108397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:21108397G>A	uc001iqi.2	-	20	2408	c.2011C>T	c.(2011-2013)CCG>TCG	p.P671S	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	671	Nebulin 19.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TCTATCTCCGGGGTCATGCTT	0.423													54	188					0	0	1	0	0
NEBL	10529	broad.mit.edu	37	10	21158759	21158759	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:21158759C>T	uc001iqi.2	-	6	889	c.492G>A	c.(490-492)AGG>AGA	p.R164R	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	164	Nebulin 4.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GCACGTCTTTCCTATAAGAAA	0.363													22	44					0	0	1	0	0
GPR158	57512	broad.mit.edu	37	10	25885597	25885597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:25885597G>A	uc001isj.2	+	10	2084	c.2024G>A	c.(2023-2025)CGA>CAA	p.R675Q	GPR158_uc001isk.2_Missense_Mutation_p.R50Q	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	675	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AATAACCCACGAGATGATATT	0.393													9	22					0	0	1	0	0
MYO3A	53904	broad.mit.edu	37	10	26432466	26432467	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:26432466_26432467GG>AA	uc001isn.2	+	21	2712_2713	c.2352_2353GG>AA	c.(2350-2355)ATGGGT>ATAAGT	p.784_785MG>IS	MYO3A_uc009xko.1_Missense_Mutation_p.784_785MG>IS|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	784_785	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AAAAGCCAATGGGTTTACTTTC	0.391													11	42					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28196681	28196681	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:28196681G>A	uc009xky.2	-	17	2619	c.2521C>T	c.(2521-2523)CGT>TGT	p.R841C	ARMC4_uc010qds.1_Missense_Mutation_p.R366C|ARMC4_uc010qdt.1_Missense_Mutation_p.R533C|ARMC4_uc001itz.2_Missense_Mutation_p.R841C	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	841	ARM 6.						binding			ovary(4)|skin(2)	6						CACAACAAACGAACTCCATCT	0.423													22	55					0	0	1	0	0
ARMC4	55130	broad.mit.edu	37	10	28225794	28225794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:28225794C>T	uc009xky.2	-	15	2211	c.2113G>A	c.(2113-2115)GAA>AAA	p.E705K	ARMC4_uc010qds.1_Missense_Mutation_p.E230K|ARMC4_uc010qdt.1_Missense_Mutation_p.E397K|ARMC4_uc001itz.2_Missense_Mutation_p.E705K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	705							binding			ovary(4)|skin(2)	6						TCCCGGGTTTCCTTATCTTCA	0.488													26	37					0	0	1	0	0
SVIL	6840	broad.mit.edu	37	10	29812539	29812539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:29812539C>T	uc001iut.1	-	15	3757	c.3004G>A	c.(3004-3006)GAA>AAA	p.E1002K	SVIL_uc010qdw.1_5'Flank|SVIL_uc001iuu.1_Missense_Mutation_p.E576K	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1002					cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				TTCGCCCGTTCCAGGCTTCCT	0.517													16	36					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317446	30317446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:30317446G>A	uc001iux.2	-	2	1690	c.1631C>T	c.(1630-1632)CCT>CTT	p.P544L	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.P406L|KIAA1462_uc009xle.1_Missense_Mutation_p.P544L	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	544										ovary(4)	4						CTGTGAGTAAGGGGAGGAAAC	0.532													46	115					0	0	1	0	0
KIAA1462	57608	broad.mit.edu	37	10	30318071	30318071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:30318071C>T	uc001iux.2	-	2	1065	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.E198K|KIAA1462_uc009xle.1_Missense_Mutation_p.E336K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	336	Pro-rich.									ovary(4)	4						ACTGGAGGTTCCAATCCAGGG	0.597													76	119					0	0	1	0	0
ZNF438	220929	broad.mit.edu	37	10	31138047	31138047	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:31138047G>A	uc010qdz.1	-	7	1722	c.1287C>T	c.(1285-1287)ACC>ACT	p.T429T	ZNF438_uc001ivn.2_Silent_p.T380T|ZNF438_uc010qdy.1_Silent_p.T419T|ZNF438_uc001ivo.3_5'UTR|ZNF438_uc009xlg.2_Silent_p.T429T|ZNF438_uc001ivp.3_Silent_p.T419T|ZNF438_uc010qea.1_Silent_p.T429T|ZNF438_uc010qeb.1_Silent_p.T429T|ZNF438_uc010qec.1_5'UTR	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	429					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				ATTTTTTCAGGGTCCCCAGCT	0.428													16	29					0	0	1	0	0
ARHGAP12	94134	broad.mit.edu	37	10	32120668	32120668	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:32120668G>A	uc001ivz.1	-	10	1717	c.1447C>T	c.(1447-1449)CGA>TGA	p.R483*	ARHGAP12_uc001ivy.1_Nonsense_Mutation_p.R429*|ARHGAP12_uc009xls.2_Nonsense_Mutation_p.R434*|ARHGAP12_uc001iwb.1_Nonsense_Mutation_p.R476*|ARHGAP12_uc001iwc.1_Nonsense_Mutation_p.R451*|ARHGAP12_uc009xlq.1_Nonsense_Mutation_p.R404*|ARHGAP12_uc001iwd.1_Nonsense_Mutation_p.R451*|ARHGAP12_uc009xlr.1_Nonsense_Mutation_p.R481*	NM_018287	NP_060757	Q8IWW6	RHG12_HUMAN	Rho GTPase activating protein 12	483	PH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		Prostate(175;0.0199)				TGTACTTACCGAACCTTTTTC	0.269													11	38					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37422911	37422911	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:37422911G>T	uc001iza.1	+	5	616	c.517G>T	c.(517-519)GTT>TTT	p.V173F		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	229	ANK 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TCAGCAAAATGTTGACGTCTT	0.388													69	114					1.74474e-33	1.78594e-33	1	1	0
ANKRD30A	91074	broad.mit.edu	37	10	37436352	37436352	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:37436352C>T	uc001iza.1	+	9	1441	c.1342C>T	c.(1342-1344)CAA>TAA	p.Q448*		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	504						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GTCTATATATCAAAAAGTAAT	0.279													13	32					0	0	1	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37490162	37490162	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:37490162G>A	uc001iza.1	+	31	2710	c.2611_splice	c.e31-1	p.S871_splice		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACTTTTAACAGAGTCTCCGTG	0.284													27	48					0	0	1	0	0
ZNF33A	7581	broad.mit.edu	37	10	38343452	38343452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:38343452C>T	uc001izh.2	+	5	575	c.397C>T	c.(397-399)CCT>TCT	p.P133S	ZNF33A_uc001izg.2_Missense_Mutation_p.P134S|ZNF33A_uc010qev.1_Missense_Mutation_p.P140S|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	133						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						AAGTTCTTTTCCTTCCAGAAA	0.323													20	87					0	0	1	0	0
CXCL12	6387	broad.mit.edu	37	10	44868783	44868783	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:44868783T>C	uc001jbf.2	-	4	364	c.275A>G	c.(274-276)AAG>AGG	p.K92R		NM_000609	NP_000600	P48061	SDF1_HUMAN	chemokine (C-X-C motif) ligand 12 (stromal	92					blood circulation|cell adhesion|cellular calcium ion homeostasis|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|negative regulation of leukocyte apoptosis|positive regulation of monocyte chemotaxis|regulation of actin polymerization or depolymerization|response to virus	extracellular space	chemokine activity|growth factor activity|signal transducer activity				0					Dexamethasone(DB01234)	CTCTCACATCTTGAACCTCCT	0.607													7	9					0	0	1	0	0
GDF2	2658	broad.mit.edu	37	10	48416454	48416454	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:48416454T>A	uc001jfa.1	-	1	403	c.240A>T	c.(238-240)AAA>AAT	p.K80N		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	80					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CCACCCTGGTTTTGTCCTGCG	0.552													33	55					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49447730	49447730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:49447730C>T	uc001jgi.2	-	7	813	c.706G>A	c.(706-708)GAA>AAA	p.E236K	FRMPD2_uc001jgh.2_Missense_Mutation_p.E205K|FRMPD2_uc001jgj.2_Missense_Mutation_p.E214K	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	236					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GTGCTTCTTTCTGAAACTAAT	0.383													7	46					0	0	1	0	0
FRMPD2	143162	broad.mit.edu	37	10	49459624	49459624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:49459624C>T	uc001jgi.2	-	2	243	c.136G>A	c.(136-138)GAA>AAA	p.E46K	FRMPD2_uc001jgh.2_Missense_Mutation_p.E37K|FRMPD2_uc001jgj.2_Missense_Mutation_p.E46K	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	46	KIND.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		CGGAGGTCTTCCAGGAGCTGC	0.572													18	61					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49654499	49654499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:49654499C>T	uc001jgt.2	-	10	2329	c.2032G>A	c.(2032-2034)GAG>AAG	p.E678K	ARHGAP22_uc001jgs.2_Missense_Mutation_p.E588K|ARHGAP22_uc001jgu.2_Missense_Mutation_p.E694K|ARHGAP22_uc010qgl.1_Missense_Mutation_p.E635K|ARHGAP22_uc010qgm.1_Missense_Mutation_p.E684K|ARHGAP22_uc001jgv.2_Missense_Mutation_p.E376K|ARHGAP22_uc001jgr.2_Missense_Mutation_p.E395K	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	678	Potential.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						AAAAACTCCTCCATTTCCCTC	0.512													36	85					0	0	1	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49658916	49658916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:49658916C>T	uc001jgt.2	-	9	1553	c.1256G>A	c.(1255-1257)GGG>GAG	p.G419E	ARHGAP22_uc001jgs.2_Missense_Mutation_p.G329E|ARHGAP22_uc001jgu.2_Missense_Mutation_p.G435E|ARHGAP22_uc010qgl.1_Missense_Mutation_p.G376E|ARHGAP22_uc010qgm.1_Missense_Mutation_p.G425E|ARHGAP22_uc001jgv.2_Missense_Mutation_p.G117E|ARHGAP22_uc001jgr.2_Missense_Mutation_p.G136E	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	419					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						CACCTTCTTCCCAGGGCTGCA	0.726													5	15					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50121724	50121724	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:50121724G>A	uc001jhd.2	-	1	557	c.477C>T	c.(475-477)ATC>ATT	p.I159I	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.I159I	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	159	LRR 6.					cytoplasm				ovary(1)|pancreas(1)	2						TGCTCACGGGGATGTTGTTCA	0.537													6	17					0	0	1	0	0
LRRC18	474354	broad.mit.edu	37	10	50122172	50122172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:50122172C>T	uc001jhd.2	-	1	109	c.29G>A	c.(28-30)GGC>GAC	p.G10D	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.G10D	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	10						cytoplasm				ovary(1)|pancreas(1)	2						GATCTTCTTGCCCTTGGGGCC	0.438													21	34					0	0	1	0	0
ERCC6	2074	broad.mit.edu	37	10	50691550	50691550	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:50691550G>A	uc001jhs.3	-	9	1988	c.1834C>T	c.(1834-1836)CGA>TGA	p.R612*	ERCC6_uc010qgr.1_5'UTR|ERCC6_uc001jhr.3_Nonsense_Mutation_p.R12*	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	612	Helicase ATP-binding.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						GCAACATCTCGAATTAGTTTC	0.348								Direct_reversal_of_damage|NER					24	44					0	0	1	0	0
PGBD3	267004	broad.mit.edu	37	10	50723688	50723688	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:50723688G>A	uc001jht.2	-	2	1728	c.1473C>T	c.(1471-1473)TTC>TTT	p.F491F	ERCC6_uc001jhs.3_Intron|PGBD3_uc009xoe.2_Silent_p.F959F|PGBD3_uc001jhu.2_Silent_p.F959F	NM_170753	NP_736609	Q8N328	PGBD3_HUMAN	hypothetical protein LOC267004	491										pancreas(1)|breast(1)|skin(1)	3						AGACCAGTTCGAAACAGAACA	0.418													45	79					0	0	1	0	0
AGAP8	728404	broad.mit.edu	37	10	51225477	51225477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:51225477G>A	uc001jij.2	-	7	1631	c.1505C>T	c.(1504-1506)CCA>CTA	p.P502L	PARG_uc001jih.2_Intron|PARG_uc001jif.2_Intron|PARG_uc001jig.2_Intron|PARG_uc010qgv.1_Intron|PARG_uc009xoi.2_Intron|PARG_uc010qgw.1_Intron|PARG_uc009xoj.2_Intron|PARG_uc010qgx.1_Intron|AGAP8_uc009xom.2_Missense_Mutation_p.P417L|AGAP8_uc001jik.2_Missense_Mutation_p.P486L|AGAP8_uc010qgy.1_Missense_Mutation_p.P525L|uc001jil.1_5'Flank	NM_001077686	NP_001071154	Q5SRD3	AGAP8_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	502	Arf-GAP.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						GAGCTCAACTGGCCAGTCATC	0.527													70	135					0	0	1	0	0
SGMS1	259230	broad.mit.edu	37	10	52103403	52103403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:52103403C>T	uc001jje.2	-	7	1426	c.472G>A	c.(472-474)GAA>AAA	p.E158K	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.E158K|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	164					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GGTACTCGTTCGTGGACGACC	0.493													13	19					0	0	1	0	0
A1CF	29974	broad.mit.edu	37	10	52619641	52619641	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:52619641G>A	uc001jjj.2	-	3	248	c.60C>T	c.(58-60)CTC>CTT	p.L20L	A1CF_uc010qhn.1_5'UTR|A1CF_uc001jji.2_Silent_p.L20L|A1CF_uc001jjh.2_5'UTR|A1CF_uc010qho.1_5'UTR|A1CF_uc009xov.2_Silent_p.L20L|A1CF_uc001jjk.1_Silent_p.L20L	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	20					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCAGTGCGCGGAGGGCTGCTT	0.478													24	84					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55582442	55582442	+	Missense_Mutation	SNP	C	T	T	rs145499180	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:55582442C>T	uc001jju.1	-	33	5439	c.5044G>A	c.(5044-5046)GAA>AAA	p.E1682K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.E1679K|PCDH15_uc010qhw.1_Missense_Mutation_p.E1642K|PCDH15_uc010qhx.1_Missense_Mutation_p.E1613K|PCDH15_uc010qhy.1_Missense_Mutation_p.E1689K|PCDH15_uc010qhz.1_Missense_Mutation_p.E1684K|PCDH15_uc010qia.1_Missense_Mutation_p.E1662K|PCDH15_uc010qib.1_Missense_Mutation_p.E1659K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1682	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GATTTGAGTTCCACAGTTCTT	0.428										HNSCC(58;0.16)			24	66					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55849824	55849824	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:55849824C>T	uc001jju.1	-	16	2313	c.1918_splice	c.e16-1	p.A640_splice	PCDH15_uc010qhq.1_Splice_Site_p.A645_splice|PCDH15_uc010qhr.1_Splice_Site_p.A640_splice|PCDH15_uc010qhs.1_Splice_Site_p.A652_splice|PCDH15_uc010qht.1_Splice_Site_p.A647_splice|PCDH15_uc010qhu.1_Splice_Site_p.A640_splice|PCDH15_uc001jjv.1_Splice_Site_p.A618_splice|PCDH15_uc010qhv.1_Splice_Site_p.A640_splice|PCDH15_uc010qhw.1_Splice_Site_p.A603_splice|PCDH15_uc010qhx.1_Intron|PCDH15_uc010qhy.1_Splice_Site_p.A645_splice|PCDH15_uc010qhz.1_Splice_Site_p.A640_splice|PCDH15_uc010qia.1_Splice_Site_p.A618_splice|PCDH15_uc010qib.1_Splice_Site_p.A618_splice|PCDH15_uc001jjw.2_Splice_Site_p.A640_splice	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor						equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GATCAGTTGCCTTCAGAGAGA	0.348										HNSCC(58;0.16)			10	49					0	0	1	0	0
PCDH15	65217	broad.mit.edu	37	10	55912973	55912973	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:55912973G>A	uc001jju.1	-	14	2066	c.1671C>T	c.(1669-1671)ATC>ATT	p.I557I	PCDH15_uc010qhq.1_Silent_p.I562I|PCDH15_uc010qhr.1_Silent_p.I557I|PCDH15_uc010qhs.1_Silent_p.I569I|PCDH15_uc010qht.1_Silent_p.I564I|PCDH15_uc010qhu.1_Silent_p.I557I|PCDH15_uc001jjv.1_Silent_p.I535I|PCDH15_uc010qhv.1_Silent_p.I557I|PCDH15_uc010qhw.1_Silent_p.I520I|PCDH15_uc010qhx.1_Silent_p.I557I|PCDH15_uc010qhy.1_Silent_p.I562I|PCDH15_uc010qhz.1_Silent_p.I557I|PCDH15_uc010qia.1_Silent_p.I535I|PCDH15_uc010qib.1_Silent_p.I535I|PCDH15_uc001jjw.2_Silent_p.I557I	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	557	Cadherin 5.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTTTATTGATGATGAAGTCTC	0.502										HNSCC(58;0.16)			30	51					0	0	1	0	0
BICC1	80114	broad.mit.edu	37	10	60559994	60559994	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:60559994T>C	uc001jki.1	+	13	1766	c.1766T>C	c.(1765-1767)CTT>CCT	p.L589P	BICC1_uc001jkj.1_Missense_Mutation_p.L230P	NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	589					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						ACTTCATCACTTGGAGAAAAA	0.373													16	24					0	0	1	0	0
JMJD1C	221037	broad.mit.edu	37	10	64968324	64968324	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:64968324A>G	uc001jmn.2	-	10	3405	c.3105T>C	c.(3103-3105)TTT>TTC	p.F1035F	JMJD1C_uc001jml.2_Silent_p.F816F|JMJD1C_uc001jmm.2_Silent_p.F747F|JMJD1C_uc010qiq.1_Silent_p.F853F|JMJD1C_uc009xpi.2_Silent_p.F853F|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Silent_p.F72F	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1035					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TTTTAGTTGTAAAGGGAGCAA	0.418													55	98					0	0	1	0	0
MYPN	84665	broad.mit.edu	37	10	69881595	69881595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:69881595G>A	uc001jnm.3	+	3	585	c.400G>A	c.(400-402)GAG>AAG	p.E134K	MYPN_uc001jnl.1_Missense_Mutation_p.E134K|MYPN_uc001jnn.3_Intron|MYPN_uc001jno.3_Missense_Mutation_p.E134K|MYPN_uc001jnp.1_Missense_Mutation_p.E134K|MYPN_uc009xps.2_Missense_Mutation_p.E134K|MYPN_uc009xpt.2_Missense_Mutation_p.E134K|MYPN_uc010qit.1_5'UTR|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	134	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AAGCCCCCAGGAGGCAAAAAG	0.428													13	47					0	0	1	0	0
SUPV3L1	6832	broad.mit.edu	37	10	70954989	70954990	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:70954989_70954990CC>TT	uc001jpe.1	+	7	954_955	c.899_900CC>TT	c.(898-900)GCC>GTT	p.A300V	SUPV3L1_uc010qjd.1_Missense_Mutation_p.A169V	NM_003171	NP_003162	Q8IYB8	SUV3_HUMAN	suppressor of var1, 3-like 1 precursor	300	Helicase ATP-binding.				DNA duplex unwinding	mitochondrial nucleoid|nucleus	ATP binding|DNA binding|DNA helicase activity|RNA binding			urinary_tract(1)|ovary(1)	2						AGAGATCCAGCCAGAGGATGGG	0.371													11	46					0	0	1	0	0
HKDC1	80201	broad.mit.edu	37	10	71017139	71017139	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:71017139C>A	uc001jpf.3	+	14	2122	c.1989C>A	c.(1987-1989)ACC>ACA	p.T663T	HKDC1_uc010qje.1_Silent_p.T526T|HKDC1_uc009xqb.2_RNA	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	663					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						CCATGATGACCTGTGGCTATG	0.423													44	111					3.4597e-24	3.52791e-24	1	1	0
PRF1	5551	broad.mit.edu	37	10	72358285	72358287	+	Missense_Mutation	TNP	GGC	TAG	TAG			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:72358285_72358287GGC>TAG	uc009xqg.2	-	3	1351_1353	c.1190_1192GCC>CTA	c.(1189-1194)TGCCAT>TCTAAT	p.397_398CH>SN	PRF1_uc001jrf.3_Missense_Mutation_p.397_398CH>SN	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	397_398	EGF-like.				apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						GCTGAGCCATGGCACACACACTG	0.685			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				6	22					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73326541	73326541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:73326541G>A	uc001jrx.3	+	7	849	c.472G>A	c.(472-474)GAC>AAC	p.D158N	CDH23_uc001jrw.3_Missense_Mutation_p.D158N|CDH23_uc001jrv.2_Missense_Mutation_p.D153N|CDH23_uc009xql.2_Missense_Mutation_p.D203N	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	158	Cadherin 2.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GAATGCCACAGACCCCGACTT	0.612													18	34					0	0	1	0	0
CDH23	64072	broad.mit.edu	37	10	73447424	73447424	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:73447424C>T	uc001jrx.3	+	18	2384	c.2007C>T	c.(2005-2007)CCC>CCT	p.P669P	CDH23_uc001jry.2_Silent_p.P285P|CDH23_uc001jrz.2_Silent_p.P285P	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	669	Cadherin 6.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						ACAACCCTCCCACCTTCAGCA	0.612													16	43					0	0	1	0	0
C10orf54	64115	broad.mit.edu	37	10	73511027	73511027	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:73511027T>C	uc001jsd.2	-	7	1060	c.919A>G	c.(919-921)AAC>GAC	p.N307D	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Missense_Mutation_p.N175D|C10orf54_uc009xqm.2_Missense_Mutation_p.N145D	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	307	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						ACCTCAAAGTTTGGAGAGTCA	0.617													4	13					0	0	1	0	0
CCDC109A	90550	broad.mit.edu	37	10	74628610	74628610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:74628610C>T	uc001jtc.2	+	5	667	c.646C>T	c.(646-648)CCC>TCC	p.P216S	CCDC109A_uc009xqp.1_RNA|CCDC109A_uc009xqq.1_RNA|CCDC109A_uc010qjy.1_RNA|CCDC109A_uc009xqr.2_Intron|CCDC109A_uc001jtd.2_Missense_Mutation_p.P167S	NM_138357	NP_612366	Q8NE86	MCU_HUMAN	coiled-coil domain containing 109A	216	Potential.|Mitochondrial matrix (Potential).				elevation of mitochondrial calcium ion concentration|mitochondrial calcium ion transport|protein complex oligomerization	integral to membrane|mitochondrial inner membrane	protein binding				0	Prostate(51;0.0198)					GCAGCTGGCTCCCCTGGAAAA	0.398													7	23					0	0	1	0	0
DNAJC9	23234	broad.mit.edu	37	10	75005793	75005793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:75005793C>T	uc001jtr.2	-	3	541	c.463G>A	c.(463-465)GAG>AAG	p.E155K	DNAJC9_uc010qkg.1_Missense_Mutation_p.E155K	NM_015190	NP_056005	Q8WXX5	DNJC9_HUMAN	DnaJ homolog, subfamily C, member 9	155					protein folding		heat shock protein binding|unfolded protein binding				0	Prostate(51;0.0119)					CTGGGTTCCTCTGTGTACTGC	0.463													30	47					0	0	1	0	0
TTC18	118491	broad.mit.edu	37	10	75082833	75082833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:75082833G>A	uc009xrc.2	-	10	1131	c.1010C>T	c.(1009-1011)TCG>TTG	p.S337L	TTC18_uc001jty.2_Missense_Mutation_p.S337L|TTC18_uc009xrd.1_Missense_Mutation_p.S145L	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	337							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ACCATGAAACGAAAGCTGAGC	0.318													28	41					0	0	1	0	0
AP3M1	26985	broad.mit.edu	37	10	75896460	75896460	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:75896460G>A	uc001jwf.2	-	3	805	c.375C>T	c.(373-375)ACC>ACT	p.T125T	AP3M1_uc001jwg.2_Silent_p.T125T|AP3M1_uc001jwh.2_Silent_p.T125T|AP3M1_uc010qla.1_Intron	NM_207012	NP_996895	Q9Y2T2	AP3M1_HUMAN	adaptor-related protein complex 3, mu 1 subunit	125					protein targeting to lysosome|vesicle-mediated transport	clathrin adaptor complex|Golgi apparatus|lysosome	protein binding				0	Prostate(51;0.0112)					TGTTAGATTCGGTAGCCAGTG	0.358													9	28					0	0	1	0	0
KCNMA1	3778	broad.mit.edu	37	10	78647063	78647063	+	Silent	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:78647063G>T	uc001jxn.2	-	28	3849	c.3672C>A	c.(3670-3672)TCC>TCA	p.S1224S	KCNMA1_uc001jxj.2_Silent_p.S1170S|KCNMA1_uc001jxk.1_Silent_p.S842S|KCNMA1_uc009xrt.1_Silent_p.S1015S|KCNMA1_uc001jxl.1_Silent_p.S849S|KCNMA1_uc001jxo.2_Silent_p.S1207S|KCNMA1_uc001jxm.2_Silent_p.S1166S|KCNMA1_uc001jxq.2_Silent_p.S1196S|uc001jxp.2_5'Flank	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	1224	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GTTTGTCCCGGGACTCCCTGG	0.542													85	183					5.14759e-42	5.27646e-42	1	1	0
DLG5	9231	broad.mit.edu	37	10	79595668	79595668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:79595668C>T	uc001jzk.2	-	8	1520	c.1450G>A	c.(1450-1452)GTG>ATG	p.V484M	DLG5_uc001jzj.2_Missense_Mutation_p.V239M|DLG5_uc009xru.1_RNA|DLG5_uc001jzl.3_Missense_Mutation_p.V88M	NM_004747	NP_004738	Q8TDM6	DLG5_HUMAN	discs large homolog 5	484					cell-cell adhesion|intracellular signal transduction|negative regulation of cell proliferation|regulation of apoptosis	cell junction|cytoplasm	beta-catenin binding|cytoskeletal protein binding|receptor signaling complex scaffold activity			ovary(5)|breast(3)	8	all_cancers(46;0.0316)|all_epithelial(25;0.00147)|Breast(12;0.0015)|Prostate(51;0.0146)		Epithelial(14;0.00105)|OV - Ovarian serous cystadenocarcinoma(4;0.00151)|all cancers(16;0.00446)			TCCATTGTCACCGTGTCTTTG	0.602													27	54					0	0	1	0	0
SFTPD	6441	broad.mit.edu	37	10	81701764	81701764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:81701764C>T	uc001kbh.2	-	5	539	c.496G>A	c.(496-498)GGA>AGA	p.G166R	MBL1P_uc001kbf.2_Intron	NM_003019	NP_003010	P35247	SFTPD_HUMAN	pulmonary surfactant-associated protein D	166	Collagen-like.				cell junction assembly|innate immune response|lung alveolus development|macrophage chemotaxis|negative regulation of interleukin-2 biosynthetic process|negative regulation of T cell proliferation|positive regulation of phagocytosis|reactive oxygen species metabolic process|receptor-mediated endocytosis|respiratory gaseous exchange|surfactant homeostasis	collagen|endocytic vesicle|extracellular space|lysosome	bacterial cell surface binding|protein binding|sugar binding			skin(1)	1	Breast(12;0.000615)|Prostate(51;0.0095)|all_epithelial(25;0.027)		Epithelial(14;0.0244)|all cancers(16;0.0558)|Colorectal(32;0.109)			CCTCGCTCTCCCTTAGGGCCT	0.612													34	70					0	0	1	0	0
MAT1A	4143	broad.mit.edu	37	10	82049104	82049104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:82049104C>T	uc001kbw.2	-	1	331	c.76G>A	c.(76-78)GGA>AGA	p.G26R		NM_000429	NP_000420	Q00266	METK1_HUMAN	methionine adenosyltransferase I, alpha	26					methylation|S-adenosylmethionine biosynthetic process|xenobiotic metabolic process	cytosol	ATP binding|metal ion binding|methionine adenosyltransferase activity				0			Colorectal(32;0.229)		L-Methionine(DB00134)|S-Adenosylmethionine(DB00118)	TGTCCCTCTCCCACAGACTCC	0.473													33	95					0	0	1	0	0
CDHR1	92211	broad.mit.edu	37	10	85962834	85962834	+	Silent	SNP	C	T	T	rs141693979		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:85962834C>T	uc001kcv.2	+	8	738	c.738C>T	c.(736-738)TTC>TTT	p.F246F	CDHR1_uc001kcw.2_Silent_p.F246F|CDHR1_uc009xst.2_Silent_p.F5F	NM_033100	NP_149091	Q96JP9	CDHR1_HUMAN	protocadherin 21 precursor	246	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion		calcium ion binding|receptor activity			ovary(1)	1						CCCCTGTCTTCGTGGGCACAC	0.612													35	78					0	0	1	0	0
FAM35A	54537	broad.mit.edu	37	10	88917887	88917887	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:88917887T>C	uc001kei.3	+	4	1722	c.1608T>C	c.(1606-1608)AGT>AGC	p.S536S	FAM35A_uc001kej.3_5'UTR	NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	536										ovary(2)|skin(2)	4						ATCTTGGGAGTTATTCATCTA	0.328													9	19					0	0	1	0	0
LIPK	643414	broad.mit.edu	37	10	90492292	90492292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:90492292C>T	uc010qmv.1	+	5	653	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_001080518	NP_001073987	Q5VXJ0	LIPK_HUMAN	lipase, family member K precursor	218					lipid catabolic process	extracellular region	hydrolase activity			ovary(2)	2		Colorectal(252;0.0381)		Colorectal(12;7.03e-05)|COAD - Colon adenocarcinoma(12;8.33e-05)		ACAACCCTTTCCAGGCGAGTA	0.353													46	102					0	0	1	0	0
IFIT1B	439996	broad.mit.edu	37	10	91144316	91144316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:91144316G>A	uc001kgh.2	+	2	1326	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	416							binding				0						CCATTCCAGGGAAAAACTTCT	0.383													25	65					0	0	1	0	0
IDE	3416	broad.mit.edu	37	10	94220954	94220954	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:94220954G>A	uc001kia.2	-	22	2893	c.2817C>T	c.(2815-2817)TTC>TTT	p.F939F	IDE_uc010qnp.1_Silent_p.F384F|IDE_uc001khz.2_Silent_p.F384F	NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	939					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TTACCTTGTAGAATTTGATGA	0.199													7	18					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95791255	95791255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:95791255G>A	uc001kjk.2	+	2	1086	c.452G>A	c.(451-453)GGA>GAA	p.G151E	PLCE1_uc010qnx.1_Missense_Mutation_p.G151E	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	151					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GTGTTCCCTGGAATTCAACTG	0.443													34	59					0	0	1	0	0
CYP2C19	1557	broad.mit.edu	37	10	96535262	96535262	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:96535262C>T	uc010qnz.1	+	3	447	c.447C>T	c.(445-447)GCC>GCT	p.A149A	CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_Silent_p.A127A	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	149					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AAGAGGAAGCCCGCTGCCTTG	0.512													56	126					0	0	1	0	0
CYP2C8	1558	broad.mit.edu	37	10	96805651	96805651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:96805651C>T	uc001kkb.2	-	6	972	c.877G>A	c.(877-879)GAT>AAT	p.D293N	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.D223N|CYP2C8_uc010qob.1_Missense_Mutation_p.D207N|CYP2C8_uc010qoc.1_Missense_Mutation_p.D191N|CYP2C8_uc010qod.1_Missense_Mutation_p.D207N	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	293					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	ACAAATAGATCAGCTACAGTG	0.433													26	53					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96971740	96971740	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:96971740C>T	uc001kke.2	+	6	986	c.861C>T	c.(859-861)GCC>GCT	p.A287A	C10orf129_uc009xuu.1_Silent_p.A197A	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	287					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		TCCAAGGAGCCTGTGTGTTTC	0.498													14	56					0	0	1	0	0
ZNF518A	9849	broad.mit.edu	37	10	97916530	97916530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:97916530C>T	uc001klp.2	+	6	1308	c.451C>T	c.(451-453)CCT>TCT	p.P151S	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Missense_Mutation_p.P151S|ZNF518A_uc001klr.2_Missense_Mutation_p.P151S	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	151	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		ACCTTCATATCCTTGTGAAAT	0.368													39	115					0	0	1	0	0
TLL2	7093	broad.mit.edu	37	10	98155086	98155086	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:98155086G>A	uc001kml.1	-	13	1810	c.1584C>T	c.(1582-1584)CCC>CCT	p.P528P	TLL2_uc009xvf.1_Silent_p.P506P	NM_012465	NP_036597	Q9Y6L7	TLL2_HUMAN	tolloid-like 2 precursor	528	CUB 2.				cell differentiation|multicellular organismal development|proteolysis	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Colorectal(252;0.0846)		Epithelial(162;1.51e-07)|all cancers(201;7.59e-06)		TCTCTTCCGTGGGGCCATCCC	0.517													26	57					0	0	1	0	0
COX15	1355	broad.mit.edu	37	10	101486849	101486849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:101486849C>T	uc001kqb.3	-	4	1075	c.458G>A	c.(457-459)CGA>CAA	p.R153Q	COX15_uc001kqc.3_Missense_Mutation_p.R153Q|COX15_uc010qpj.1_Intron	NM_078470	NP_510870	Q7KZN9	COX15_HUMAN	COX15 homolog isoform 1	153					heme a biosynthetic process|respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial respiratory chain	cytochrome-c oxidase activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;3.08e-10)|all cancers(201;2.43e-08)		ACCCCACATTCGGTGTGAGTA	0.493													17	45					0	0	1	0	0
DNMBP	23268	broad.mit.edu	37	10	101646249	101646249	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:101646249C>T	uc001kqj.2	-	13	3518	c.3426G>A	c.(3424-3426)AAG>AAA	p.K1142K	DNMBP_uc010qpl.1_Silent_p.K78K|DNMBP_uc001kqg.2_Silent_p.K430K|DNMBP_uc001kqh.2_Silent_p.K774K	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	1142	Potential.|BAR.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		TCTTCTTGTCCTTTAGCTTTT	0.527													47	88					0	0	1	0	0
ERLIN1	10613	broad.mit.edu	37	10	101911949	101911949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:101911949G>A	uc001kqn.3	-	11	1337	c.986C>T	c.(985-987)TCT>TTT	p.S329F	ERLIN1_uc001kqm.3_Missense_Mutation_p.S94F|ERLIN1_uc001kqo.3_Missense_Mutation_p.S329F|ERLIN1_uc010qpm.1_Missense_Mutation_p.S245F	NM_006459	NP_006450	O75477	ERLN1_HUMAN	ER lipid raft associated 1	327	Lumenal (Potential).				ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane	protein binding				0		Colorectal(252;0.234)		Epithelial(162;3.85e-10)|all cancers(201;3.25e-08)		AGCCTCCTTAGAGGGGAGTGA	0.448													13	20					0	0	1	0	0
SEMA4G	57715	broad.mit.edu	37	10	102743575	102743575	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:102743575C>T	uc001krw.1	+	14	2603	c.2219C>T	c.(2218-2220)CCT>CTT	p.P740L	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krx.2_Intron|MRPL43_uc001kry.1_Splice_Site_p.D156_splice|MRPL43_uc010qpu.1_Splice_Site_p.G198_splice|MRPL43_uc001krz.1_Splice_Site|MRPL43_uc001ksa.1_Splice_Site_p.G198_splice|MRPL43_uc001ksb.1_Splice_Site_p.D156_splice	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	735	Cytoplasmic (Potential).				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		GGCCAGTGTCCTGGAGAGGAA	0.667													7	9					0	0	1	0	0
GBF1	8729	broad.mit.edu	37	10	104140992	104140992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:104140992C>T	uc001kux.1	+	39	5519	c.5279C>T	c.(5278-5280)CCA>CTA	p.P1760L	GBF1_uc001kuy.1_Missense_Mutation_p.P1756L|GBF1_uc001kuz.1_Missense_Mutation_p.P1757L	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1760	Pro-rich.				COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CCAGAGATTCCATCTGAGCTG	0.627													15	49					0	0	1	0	0
MIR936	100126326	broad.mit.edu	37	10	105807933	105807933	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:105807933C>T	hsa-mir-936|MI0005758	-			c.12C>T			COL17A1_uc001kxr.2_Intron																	0						TCTACTGTCCCAGTGGCCTTG	0.587													49	102					0	0	1	0	0
ADD3	120	broad.mit.edu	37	10	111872537	111872537	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:111872537C>T	uc001kyt.3	+	4	512	c.198C>T	c.(196-198)GCC>GCT	p.A66A	ADD3_uc001kys.3_Silent_p.A66A|ADD3_uc001kyu.2_Silent_p.A66A|ADD3_uc001kyv.2_Silent_p.A66A|ADD3_uc001kyw.2_Silent_p.A66A	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	66						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		TATTACAGGCCTTTCGGGAAG	0.408													22	41					0	0	1	0	0
PDCD4	27250	broad.mit.edu	37	10	112655733	112655733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:112655733C>T	uc001kzh.2	+	11	1480	c.1237C>T	c.(1237-1239)CCG>TCG	p.P413S	PDCD4_uc001kzg.2_Missense_Mutation_p.P402S|PDCD4_uc010qre.1_Missense_Mutation_p.P399S	NM_014456	NP_055271	Q53EL6	PDCD4_HUMAN	programmed cell death 4 isoform 1	413	MI 2.				apoptosis|cell aging|negative regulation of cell cycle|negative regulation of JUN kinase activity|negative regulation of transcription, DNA-dependent	cytosol|nucleus	protein binding|RNA binding			ovary(1)|breast(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.000526)|all cancers(201;0.00794)|BRCA - Breast invasive adenocarcinoma(275;0.125)		CAATGAAATTCCGGACATTAA	0.353													27	40					0	0	1	0	0
VWA2	340706	broad.mit.edu	37	10	116046165	116046165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:116046165G>A	uc001lbl.1	+	11	1786	c.1465G>A	c.(1465-1467)GAG>AAG	p.E489K	VWA2_uc001lbk.1_Missense_Mutation_p.E489K|VWA2_uc009xyf.1_Missense_Mutation_p.E185K	NM_198496	NP_940898	Q5GFL6	VWA2_HUMAN	von Willebrand factor A domain containing 2	489	VWFA 2.					extracellular region				ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5				Epithelial(162;0.036)|all cancers(201;0.0793)		AGAGCTGGAGGAGATCACAGG	0.632													38	77					0	0	1	0	0
ATRNL1	26033	broad.mit.edu	37	10	117075215	117075215	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:117075215G>A	uc001lcg.2	+	18	3392	c.3006G>A	c.(3004-3006)AAG>AAA	p.K1002K	ATRNL1_uc010qsm.1_Silent_p.K177K|ATRNL1_uc010qsn.1_RNA	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	1002	PSI 5.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		CCAAAGAAAAGAACTATGAGT	0.403													35	60					0	0	1	0	0
KCNK18	338567	broad.mit.edu	37	10	118969796	118969796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:118969796C>T	uc010qsr.1	+	3	1141	c.1141C>T	c.(1141-1143)CTT>TTT	p.L381F		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	381	Cytoplasmic (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		GTTTTACCACCTTGTTAAAAA	0.403													24	35					0	0	1	0	0
PDZD8	118987	broad.mit.edu	37	10	119043865	119043865	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:119043865G>T	uc001lde.1	-	5	2578	c.2379C>A	c.(2377-2379)TTC>TTA	p.F793L		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	793					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TCAAATATTTGAAGTGAATAG	0.378													18	53					2.94398e-08	2.96409e-08	1	1	0
PDZD8	118987	broad.mit.edu	37	10	119044584	119044584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:119044584G>A	uc001lde.1	-	5	1859	c.1660C>T	c.(1660-1662)CCG>TCG	p.P554S		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	554	Pro-rich.				intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TGAATTTTCGGTGGTAGTGGG	0.418													23	104					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123844580	123844580	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:123844580G>A	uc001lfv.2	+	4	2925	c.2565G>A	c.(2563-2565)GGG>GGA	p.G855G	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.G855G|TACC2_uc010qtv.1_Silent_p.G855G	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	855						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CTGAAAATGGGAAAGAGACTT	0.507													41	85					0	0	1	0	0
TACC2	10579	broad.mit.edu	37	10	123970781	123970781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:123970781G>A	uc001lfv.2	+	9	7201	c.6841G>A	c.(6841-6843)GAA>AAA	p.E2281K	TACC2_uc001lfw.2_Missense_Mutation_p.E427K|TACC2_uc009xzx.2_Missense_Mutation_p.E2236K|TACC2_uc010qtv.1_Missense_Mutation_p.E2285K|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.E359K|TACC2_uc001lga.2_Missense_Mutation_p.E359K|TACC2_uc009xzy.2_Missense_Mutation_p.E359K|TACC2_uc001lgb.2_Missense_Mutation_p.E316K|TACC2_uc010qtw.1_Missense_Mutation_p.E376K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2281						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CAACCAGCAGGAAAACCCCCC	0.512													10	29					0	0	1	0	0
BTBD16	118663	broad.mit.edu	37	10	124096120	124096120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:124096120G>A	uc001lgc.1	+	15	1626	c.1375G>A	c.(1375-1377)GAC>AAC	p.D459N	BTBD16_uc001lgd.1_Missense_Mutation_p.D458N	NM_144587	NP_653188	Q32M84	BTBDG_HUMAN	BTB (POZ) domain containing 16	459										skin(1)	1		all_neural(114;0.107)|Lung NSC(174;0.175)|all_lung(145;0.222)|Breast(234;0.238)				GGCCCTGGTTGACGGCAAGTG	0.547													26	43					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124361461	124361461	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:124361461C>T	uc001lgk.1	+	29	3598	c.3492C>T	c.(3490-3492)GGC>GGT	p.G1164G	DMBT1_uc001lgl.1_Silent_p.G1154G|DMBT1_uc001lgm.1_Silent_p.G665G|DMBT1_uc009xzz.1_Silent_p.G1164G|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Intron	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1164	SRCR 9.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGCAGCTGGGCTGTGGCTGGG	0.597													95	263					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124380671	124380671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:124380671G>A	uc001lgk.1	+	41	5102	c.4996G>A	c.(4996-4998)GAT>AAT	p.D1666N	DMBT1_uc001lgl.1_Missense_Mutation_p.D1656N|DMBT1_uc001lgm.1_Missense_Mutation_p.D1038N|DMBT1_uc009xzz.1_Missense_Mutation_p.D1666N|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.D369N|DMBT1_uc009yac.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1666	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AACCGTGTGTGATGACAGCTG	0.607													134	302					0	0	1	0	0
C10orf120	399814	broad.mit.edu	37	10	124459191	124459191	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:124459191G>A	uc001lgn.2	-	1	148	c.116C>T	c.(115-117)TCC>TTC	p.S39F		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	39										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				ATCCTGAAAGGAAGAGTTGGT	0.438													15	32					0	0	1	0	0
OAT	4942	broad.mit.edu	37	10	126090297	126090297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:126090297C>T	uc001lhp.2	-	8	1119	c.1012G>A	c.(1012-1014)GAG>AAG	p.E338K	OAT_uc001lhq.2_RNA|OAT_uc001lhr.2_Missense_Mutation_p.E200K	NM_000274	NP_000265	P04181	OAT_HUMAN	ornithine aminotransferase precursor	338					cellular amino acid biosynthetic process|visual perception	mitochondrial matrix	ornithine-oxo-acid transaminase activity|protein binding|pyridoxal phosphate binding				0		all_lung(145;0.0271)|Lung NSC(174;0.0436)|Colorectal(57;0.102)|all_neural(114;0.116)			L-Ornithine(DB00129)|Pyridoxal Phosphate(DB00114)	GTCTTTACCTCAAGGGCTGCG	0.448													10	31					0	0	1	0	0
FAM175B	23172	broad.mit.edu	37	10	126505149	126505149	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:126505149C>T	uc001lib.3	+	3	213	c.168C>T	c.(166-168)ATC>ATT	p.I56I		NM_032182	NP_115558	Q15018	F175B_HUMAN	hypothetical protein LOC23172	56	MPN-like.			EIH -> QIY (in Ref. 1; BAA09927).		BRISC complex	polyubiquitin binding				0						TTACAGAAATCCATAACCATC	0.289													19	37					0	0	1	0	0
DHX32	55760	broad.mit.edu	37	10	127555595	127555595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:127555595G>A	uc001ljf.1	-	2	931	c.440C>T	c.(439-441)CCT>CTT	p.P147L	DHX32_uc001ljg.1_Missense_Mutation_p.P147L	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32	147	Helicase ATP-binding.					mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GTTCTCGAAAGGGATCACGTA	0.507													49	130					0	0	1	0	0
DHX32	55760	broad.mit.edu	37	10	127569209	127569209	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:127569209A>G	uc001ljf.1	-	1	676	c.185T>C	c.(184-186)CTT>CCT	p.L62P	DHX32_uc001ljg.1_Missense_Mutation_p.L62P	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32	62						mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CCATATAGGAAGATCTTCTCT	0.388													19	33					0	0	1	0	0
MKI67	4288	broad.mit.edu	37	10	129910062	129910062	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:129910062G>T	uc001lke.2	-	11	2302	c.2107C>A	c.(2107-2109)CAC>AAC	p.H703N	MKI67_uc001lkf.2_Missense_Mutation_p.H343N|MKI67_uc009yav.1_Missense_Mutation_p.H278N|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	703					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AATTGACTGTGAACTTCGCCC	0.443													29	57					2.08457e-15	2.10744e-15	1	1	0
MKI67	4288	broad.mit.edu	37	10	129910434	129910434	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:129910434G>A	uc001lke.2	-	9	2127	c.1932C>T	c.(1930-1932)TCC>TCT	p.S644S	MKI67_uc001lkf.2_Silent_p.S284S|MKI67_uc009yav.1_Silent_p.S219S|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	644					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TTCTTCTTTTGGAACATATCA	0.373													43	67					0	0	1	0	0
EBF3	253738	broad.mit.edu	37	10	131640505	131640505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:131640505G>A	uc001lki.1	-	13	1279	c.1220C>T	c.(1219-1221)CCC>CTC	p.P407L		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	416					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GTGATTGCGGGGAACGCTGTA	0.642													57	165					0	0	1	0	0
KNDC1	85442	broad.mit.edu	37	10	135012301	135012301	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:135012301C>T	uc001llz.1	+	14	2290	c.2289C>T	c.(2287-2289)CCC>CCT	p.P763P	KNDC1_uc001lma.1_Silent_p.P698P|KNDC1_uc001lmb.1_Silent_p.P175P	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	763	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GCCCTCCACCCCAGGCCCCAG	0.731													4	15					0	0	1	0	0
CYP2E1	1571	broad.mit.edu	37	10	135345690	135345690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:135345690C>T	uc001lnj.1	+	4	583	c.550C>T	c.(550-552)CTC>TTC	p.L184F	CYP2E1_uc001lnk.1_Missense_Mutation_p.L47F|CYP2E1_uc009ybl.1_5'UTR|CYP2E1_uc009ybm.1_Intron|CYP2E1_uc001lnl.1_5'UTR	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	184					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	AGCCGACATCCTCTTCCGCAA	0.522									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				45	114					0	0	1	0	0
CYP2E1	1571	broad.mit.edu	37	10	135350649	135350649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr10:135350649G>A	uc001lnj.1	+	7	1083	c.1050G>A	c.(1048-1050)ATG>ATA	p.M350I	CYP2E1_uc001lnk.1_Missense_Mutation_p.M213I|CYP2E1_uc009ybl.1_Missense_Mutation_p.M151I|CYP2E1_uc009ybm.1_Missense_Mutation_p.M4I|CYP2E1_uc001lnl.1_Missense_Mutation_p.M151I	NM_000773	NP_000764	P05181	CP2E1_HUMAN	cytochrome P450, family 2, subfamily E,	350					drug metabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding			central_nervous_system(3)	3		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)	Acetaminophen(DB00316)|Chlorzoxazone(DB00356)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Dacarbazine(DB00851)|Dapsone(DB00250)|Enflurane(DB00228)|Eszopiclone(DB00402)|Ethanol(DB00898)|Ethosuximide(DB00593)|Fomepizole(DB01213)|Glutathione(DB00143)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Isoniazid(DB00951)|Menadione(DB00170)|Mephenytoin(DB00532)|Methoxyflurane(DB01028)|Midazolam(DB00683)|Mitoxantrone(DB01204)|Nicotine(DB00184)|Nifedipine(DB01115)|Nitrofurantoin(DB00698)|Orphenadrine(DB01173)|Phenelzine(DB00780)|Quinidine(DB00908)|S-Adenosylmethionine(DB00118)|Sevoflurane(DB01236)|Theophylline(DB00277)|Tolbutamide(DB01124)	TGCCCTACATGGATGCTGTGG	0.522									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				39	83					0	0	1	0	0
ODF3	113746	broad.mit.edu	37	11	198237	198237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:198237G>A	uc001lob.2	+	4	643	c.349G>A	c.(349-351)GAC>AAC	p.D117N	ODF3_uc010qvk.1_Missense_Mutation_p.D117N|ODF3_uc001loc.2_3'UTR	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3	117					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GTACGTGTTCGACTCAGCACC	0.597													10	24					0	0	1	0	0
ATHL1	80162	broad.mit.edu	37	11	292007	292008	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:292007_292008TC>AT	uc010qvu.1	+	5	1053_1054	c.938_939TC>AT	c.(937-939)TTC>TAT	p.F313Y	ATHL1_uc001lor.3_Missense_Mutation_p.F136Y|ATHL1_uc001los.1_Missense_Mutation_p.F313Y|ATHL1_uc001lou.3_5'Flank|ATHL1_uc001lov.3_5'Flank	NM_025092	NP_079368	Q32M88	ATHL1_HUMAN	ATH1, acid trehalase-like 1	313					carbohydrate metabolic process		hydrolase activity, acting on glycosyl bonds			liver(1)|central_nervous_system(1)|skin(1)	3		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.38e-28)|Epithelial(43;3.25e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		ATCCTGATGTTCCACCCAGAAG	0.658													6	10					0	0	1	0	0
PKP3	11187	broad.mit.edu	37	11	404129	404129	+	Missense_Mutation	SNP	G	A	A	rs79659860	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:404129G>A	uc001lpc.2	+	11	2340	c.2264G>A	c.(2263-2265)CGG>CAG	p.R755Q		NM_007183	NP_009114	Q9Y446	PKP3_HUMAN	plakophilin 3	755					cell adhesion	desmosome|nucleus	binding			skin(1)	1		all_cancers(49;3.02e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AAGAAGAAGCGGGACAGGTAG	0.612													19	64					0	0	1	0	0
PTDSS2	81490	broad.mit.edu	37	11	489449	489449	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:489449C>T	uc001lpj.2	+	9	1080	c.904C>T	c.(904-906)CGC>TGC	p.R302C		NM_030783	NP_110410	Q9BVG9	PTSS2_HUMAN	phosphatidylserine synthase 2	302	Cytoplasmic (Potential).					integral to membrane					0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;2.76e-26)|Epithelial(43;2.56e-25)|OV - Ovarian serous cystadenocarcinoma(40;7.54e-20)|BRCA - Breast invasive adenocarcinoma(625;8.76e-05)|Lung(200;0.0407)|LUSC - Lung squamous cell carcinoma(625;0.0735)	Phosphatidylserine(DB00144)	CAGCTGGGTTCGCTTCGAGTG	0.622													19	30					0	0	1	0	0
IRF7	3665	broad.mit.edu	37	11	613080	613081	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:613080_613081GG>AA	uc001lqh.2	-	10	1644_1645	c.1274_1275CC>TT	c.(1273-1275)TCC>TTT	p.S425F	IRF7_uc009ycb.2_Missense_Mutation_p.S319F|IRF7_uc010qwf.1_Missense_Mutation_p.S424F|IRF7_uc001lqf.2_Missense_Mutation_p.S132F|IRF7_uc010qwg.1_Missense_Mutation_p.S132F|IRF7_uc001lqg.2_Missense_Mutation_p.S438F|IRF7_uc001lqi.2_Missense_Mutation_p.S396F|IRF7_uc010qwh.1_Missense_Mutation_p.S132F	NM_001572	NP_001563	Q92985	IRF7_HUMAN	interferon regulatory factor 7 isoform a	425					interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of interferon-alpha production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(49;1.69e-08)|all_epithelial(84;1.65e-05)|Breast(177;0.000231)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;7.68e-28)|Epithelial(43;7.44e-27)|OV - Ovarian serous cystadenocarcinoma(40;3.53e-21)|BRCA - Breast invasive adenocarcinoma(625;6.96e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TATAGCGTGGGGAGCCACGGCG	0.634													4	19					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1261118	1261118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:1261118G>A	uc009ycr.1	+	44	5878	c.5752G>A	c.(5752-5754)GGA>AGA	p.G1918R	MUC5B_uc001ltb.2_Missense_Mutation_p.G1228R|MUC5B_uc001lta.2_Missense_Mutation_p.G893R	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1225	Cys-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CGACAAGGACGGAAACTACTA	0.652													3	24					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1269775	1269775	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:1269775G>A	uc009ycr.1	+	50	13375	c.13249G>A	c.(13249-13251)GTG>ATG	p.V4417M	MUC5B_uc001ltb.2_Missense_Mutation_p.V3892M	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	3889	7 X Cys-rich subdomain repeats.|11 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CACGCCTCCAGTGTGGATCAG	0.652													41	64					0	0	1	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1643249	1643249	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:1643249G>A	uc009ycy.1	-	1	120	c.33C>T	c.(31-33)GGC>GGT	p.G11G		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	25						keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		cacagccagagccacagcccc	0.254													43	73					0	0	1	0	0
CTSD	1509	broad.mit.edu	37	11	1776238	1776238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:1776238C>T	uc001luc.1	-	6	858	c.725G>A	c.(724-726)GGG>GAG	p.G242E	CTSD_uc009yda.1_RNA	NM_001909	NP_001900	P07339	CATD_HUMAN	cathepsin D preproprotein	242					cell death|proteolysis	extracellular space|lysosome|melanosome	aspartic-type endopeptidase activity				0		all_epithelial(84;0.00018)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0684)|LUSC - Lung squamous cell carcinoma(625;0.0822)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CAGCTCACCCCCAGGCTGCGC	0.592													29	65					0	0	1	0	0
SYT8	90019	broad.mit.edu	37	11	1858082	1858082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:1858082G>A	uc001lue.1	+	7	951	c.823G>A	c.(823-825)GGA>AGA	p.G275R	SYT8_uc001lud.2_Missense_Mutation_p.G275R|SYT8_uc001luf.1_Missense_Mutation_p.G261R|TNNI2_uc010qxc.1_5'Flank|TNNI2_uc010qxd.1_5'Flank	NM_138567	NP_612634	Q8NBV8	SYT8_HUMAN	synaptotagmin VIII	275	C2 2.|Cytoplasmic (Potential).					acrosomal vesicle|integral to membrane|plasma membrane|synaptic vesicle	transporter activity			ovary(1)	1		all_epithelial(84;0.000138)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00136)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		CCTGCGTCCAGGACTTGCAGG	0.682													10	18					0	0	1	0	0
TH	7054	broad.mit.edu	37	11	2185486	2185486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:2185486G>A	uc001lvq.2	-	14	1583	c.1564C>T	c.(1564-1566)CAT>TAT	p.H522Y	TH_uc001lvp.2_Missense_Mutation_p.H518Y|TH_uc001lvr.2_Missense_Mutation_p.H491Y|TH_uc010qxj.1_Missense_Mutation_p.H495Y|TH_uc001lvs.2_Missense_Mutation_p.H397Y|TH_uc001lvt.2_Missense_Mutation_p.H401Y	NM_199292	NP_954986	P07101	TY3H_HUMAN	tyrosine hydroxylase isoform a	522					dopamine biosynthetic process from tyrosine|embryonic camera-type eye morphogenesis|epinephrine biosynthetic process|eye photoreceptor cell development|heart morphogenesis|hormone biosynthetic process|learning|locomotory behavior|memory|neurotransmitter biosynthetic process|neurotransmitter secretion|norepinephrine biosynthetic process|pigmentation|regulation of heart contraction|response to ethanol|response to hypoxia|synaptic transmission, dopaminergic|visual perception	cytosol|internal side of plasma membrane|melanosome membrane|nucleus|perikaryon|smooth endoplasmic reticulum	protein binding|tyrosine 3-monooxygenase activity				0		all_epithelial(84;1.46e-23)|Lung NSC(207;4.44e-11)|all_lung(207;1.11e-09)|Ovarian(85;1.78e-06)|Breast(177;1.78e-05)|Medulloblastoma(188;0.0208)|all_neural(188;0.0416)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;8.45e-09)|Lung(200;0.000152)|LUSC - Lung squamous cell carcinoma(625;0.00154)	L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Metyrosine(DB00765)|Tetrahydrobiopterin(DB00360)	CTCAGCGCATGGGCAAGGGTG	0.682													4	9					0	0	1	0	0
OSBPL5	114879	broad.mit.edu	37	11	3141658	3141658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:3141658G>A	uc001lxk.2	-	6	757	c.599C>T	c.(598-600)GCC>GTC	p.A200V	OSBPL5_uc010qxq.1_Intron|OSBPL5_uc009ydw.2_Intron|OSBPL5_uc001lxl.2_Intron|OSBPL5_uc009ydx.2_Missense_Mutation_p.A224V	NM_020896	NP_065947	Q9H0X9	OSBL5_HUMAN	oxysterol-binding protein-like protein 5 isoform	200	PH.				cholesterol metabolic process|cholesterol transport|Golgi to plasma membrane transport	cytosol	oxysterol binding|protein binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(84;0.000236)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)		BRCA - Breast invasive adenocarcinoma(625;0.00607)|LUSC - Lung squamous cell carcinoma(625;0.207)		CACCTTCACGGCCCAGACGGA	0.652													9	7					0	0	1	0	0
ART1	417	broad.mit.edu	37	11	3681198	3681198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:3681198C>T	uc001lye.1	+	3	550	c.449C>T	c.(448-450)TCC>TTC	p.S150F	ART1_uc009yeb.1_Missense_Mutation_p.S150F	NM_004314	NP_004305	P52961	NAR1_HUMAN	ADP-ribosyltransferase 1 precursor	150					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane|sarcoplasmic reticulum membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity				0		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0351)|LUSC - Lung squamous cell carcinoma(625;0.195)	Becaplermin(DB00102)	CACCACTTCTCCTTCAAGACA	0.667													17	55					0	0	1	0	0
OR52K1	390036	broad.mit.edu	37	11	4510780	4510780	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:4510780T>C	uc001lza.1	+	1	650	c.650T>C	c.(649-651)ATC>ACC	p.I217T		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		CTCTTTGTTATCCTGTCTTAT	0.502													60	143					0	0	1	0	0
OR52M1	119772	broad.mit.edu	37	11	4566853	4566853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:4566853C>T	uc010qyf.1	+	1	433	c.433C>T	c.(433-435)CGT>TGT	p.R145C		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGTGGTGGGTCGTTTGGGGCT	0.522													12	48					0	0	1	0	0
OR52I1	390037	broad.mit.edu	37	11	4616188	4616188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:4616188G>A	uc010qyi.1	+	1	920	c.920G>A	c.(919-921)GGA>GAA	p.G307E		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		TTGCTGGAGGGAATATGGAGT	0.468													30	95					0	0	1	0	0
OR51S1	119692	broad.mit.edu	37	11	4870102	4870102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:4870102G>A	uc010qyo.1	-	1	337	c.337C>T	c.(337-339)CAT>TAT	p.H113Y		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAAAAGACATGGATAAAAACC	0.567													36	52					0	0	1	0	0
OR51A7	119687	broad.mit.edu	37	11	4929415	4929415	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:4929415G>A	uc010qyq.1	+	1	816	c.816G>A	c.(814-816)GTG>GTA	p.V272V		NM_001004749	NP_001004749	Q8NH64	O51A7_HUMAN	olfactory receptor, family 51, subfamily A,	272	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTCTTGTTGTGATCCTTATTG	0.493													55	108					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5011056	5011056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5011056C>T	uc001lzv.2	+	2	296	c.278C>T	c.(277-279)TCG>TTG	p.S93L		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	93					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		ACCTCCATCTCGCCAGGAAGA	0.517													21	39					0	0	1	0	0
OR51L1	119682	broad.mit.edu	37	11	5020830	5020830	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5020830T>C	uc010qyu.1	+	1	618	c.618T>C	c.(616-618)ATT>ATC	p.I206I		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTGTAGTCATTGCCACACTAG	0.433													10	49					0	0	1	0	0
OR52A1	23538	broad.mit.edu	37	11	5172726	5172726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5172726G>A	uc010qyy.1	-	1	874	c.874C>T	c.(874-876)CCA>TCA	p.P292S		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TAGACAAGTGGATTGAGAAAT	0.388													24	91					0	0	1	0	0
OR51V1	283111	broad.mit.edu	37	11	5221254	5221254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5221254G>A	uc010qyz.1	-	1	677	c.677C>T	c.(676-678)TCC>TTC	p.S226F		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	226	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAGGATGTAGGAGAAAAGGAT	0.448													21	31					0	0	1	0	0
HBB	3043	broad.mit.edu	37	11	5248189	5248189	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5248189C>T	uc001mae.1	-	1	113	c.63G>A	c.(61-63)GTG>GTA	p.V21V		NM_000518	NP_000509	P68871	HBB_HUMAN	beta globin	21					blood coagulation|hydrogen peroxide catabolic process|nitric oxide transport|positive regulation of cell death|positive regulation of nitric oxide biosynthetic process|protein heterooligomerization|regulation of blood pressure|regulation of blood vessel size	haptoglobin-hemoglobin complex|hemoglobin complex	heme binding|hemoglobin binding|oxygen binding|oxygen transporter activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)	Iron Dextran(DB00893)	CAACTTCATCCACGTTCACCT	0.512									Sickle_Cell_Trait				18	54					0	0	1	0	0
HBE1	3046	broad.mit.edu	37	11	5290895	5290895	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5290895A>T	uc001mal.1	-	2	357	c.104T>A	c.(103-105)GTT>GAT	p.V35D	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Missense_Mutation_p.V35D	NM_005330	NP_005321	P02100	HBE_HUMAN	epsilon globin	35					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.34e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCAGGGGTAAACAACGAGGAG	0.458													16	19					0	0	1	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529468	5529468	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5529468A>G	uc001may.1	-	2	1407	c.1321T>C	c.(1321-1323)TTG>CTG	p.L441L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	441										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGATCAGGCAAGTTTGTGCTA	0.537													31	59					0	0	1	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5664813	5664813	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5664813C>T	uc001mbf.2	+	14	2647	c.2403C>T	c.(2401-2403)TTC>TTT	p.F801F	HBG2_uc001mak.1_Intron|TRIM34_uc001mbh.2_Silent_p.F447F|TRIM34_uc009yeq.2_Silent_p.F202F|TRIM34_uc001mbi.2_Silent_p.F447F|TRIM78P_uc009yer.2_Intron	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	801						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		TCTCATTTTTCAATGTCACAA	0.468													30	58					0	0	1	0	0
OR52N1	79473	broad.mit.edu	37	11	5809542	5809542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5809542G>A	uc010qzo.1	-	1	505	c.505C>T	c.(505-507)CCA>TCA	p.P169S	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		TTGCAGTATGGAAGGCGCTTG	0.478													13	31					0	0	1	0	0
OR56A3	390083	broad.mit.edu	37	11	5968870	5968870	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5968870C>T	uc010qzt.1	+	1	294	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCATCAGCTTCCCTGCCTGCT	0.532													45	106					0	0	1	0	0
OR56A5	390084	broad.mit.edu	37	11	5989598	5989598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:5989598C>T	uc010qzu.1	-	1	127	c.127G>A	c.(127-129)GGG>AGG	p.G43R		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	43	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						GCATTGGCCCCCATGGCCAGG	0.567													11	21					0	0	1	0	0
OR52L1	338751	broad.mit.edu	37	11	6008009	6008009	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:6008009A>T	uc001mcd.2	-	1	207	c.152T>A	c.(151-153)ATC>AAC	p.I51N		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	51	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAGGTAAAGGATGCCCAGGGG	0.493													4	26					0	0	1	0	0
OR56A4	120793	broad.mit.edu	37	11	6024279	6024279	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:6024279T>C	uc010qzv.1	-	1	100	c.100A>G	c.(100-102)ACT>GCT	p.T34A		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGTAGAGAAGTACAGAAACAT	0.418													22	38					0	0	1	0	0
DNHD1	144132	broad.mit.edu	37	11	6519549	6519550	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:6519549_6519550CC>TT	uc001mdw.3	+	3	668_669	c.104_105CC>TT	c.(103-105)CCC>CTT	p.P35L	DNHD1_uc001mdp.2_Missense_Mutation_p.P35L	NM_144666	NP_653267	Q96M86	DNHD1_HUMAN	dynein heavy chain domain 1 isoform 1	35					microtubule-based movement	dynein complex	microtubule motor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.171)		Epithelial(150;3.93e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		AAAGAACAGCCCTTGGCCTGCC	0.535													58	207					0	0	1	0	0
ZNF215	7762	broad.mit.edu	37	11	6964834	6964835	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:6964834_6964835GG>AA	uc001mey.2	+	6	1262_1263	c.674_675GG>AA	c.(673-675)TGG>TAA	p.W225*	ZNF215_uc010raw.1_Missense_Mutation_p.G181K|ZNF215_uc010rax.1_Intron|ZNF215_uc001mez.1_Nonsense_Mutation_p.W225*	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	225	KRAB.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		AAAAAAAGATGGATAATGGAGA	0.342													18	67					0	0	1	0	0
NLRP14	338323	broad.mit.edu	37	11	7064407	7064407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:7064407G>A	uc001mfb.1	+	4	1473	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	384	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GCAGCAAATGGAGAAGGGTGG	0.468													47	84					0	0	1	0	0
PPFIBP2	8495	broad.mit.edu	37	11	7656819	7656819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:7656819C>T	uc001mfj.3	+	14	1619	c.1231C>T	c.(1231-1233)CCC>TCC	p.P411S	PPFIBP2_uc010rbb.1_Missense_Mutation_p.P334S|PPFIBP2_uc001mfk.1_Intron|PPFIBP2_uc010rbc.1_Missense_Mutation_p.P334S|PPFIBP2_uc010rbd.1_Missense_Mutation_p.P253S|PPFIBP2_uc010rbe.1_Missense_Mutation_p.P299S|PPFIBP2_uc001mfl.3_Missense_Mutation_p.P268S|PPFIBP2_uc009yfj.1_Missense_Mutation_p.P55S	NM_003621	NP_003612	Q8ND30	LIPB2_HUMAN	PTPRF interacting protein, binding protein 2	411					cell communication|DNA integration	intracellular	DNA binding|integrase activity|protein binding			ovary(2)|breast(2)	4				Epithelial(150;2.01e-07)|BRCA - Breast invasive adenocarcinoma(625;0.236)		GGTGTTAGAACCCAAGGTACA	0.398													20	42					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7981250	7981250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:7981250C>T	uc001mfv.1	-	2	1926	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	637							ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		GTAGAAGCTTCCTTTTGTGTT	0.323													7	18					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7981922	7981922	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:7981922G>A	uc001mfv.1	-	2	1254	c.1237C>T	c.(1237-1239)CTG>TTG	p.L413L		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	413	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGGGAGCACAGACTCCTCAGG	0.542													10	39					0	0	1	0	0
NLRP10	338322	broad.mit.edu	37	11	7982421	7982421	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:7982421G>A	uc001mfv.1	-	2	755	c.738C>T	c.(736-738)TTC>TTT	p.F246F		NM_176821	NP_789791	Q86W26	NAL10_HUMAN	NLR family, pyrin domain containing 10	246	NACHT.						ATP binding			lung(4)|ovary(2)|pancreas(1)|kidney(1)|skin(1)	9				Epithelial(150;1.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CATCCAGGATGAACAGGAGCC	0.537													15	34					0	0	1	0	0
STK33	65975	broad.mit.edu	37	11	8496277	8496277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:8496277C>T	uc001mgi.1	-	1	1095	c.176G>A	c.(175-177)AGA>AAA	p.R59K	STK33_uc001mgj.1_Missense_Mutation_p.R59K|STK33_uc001mgk.1_Missense_Mutation_p.R59K|STK33_uc010rbn.1_Missense_Mutation_p.R18K|STK33_uc001mgl.3_Intron|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	59						Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		TTCTTTTTTTCTCTCCAGTGA	0.378													12	19					0	0	1	0	0
SCUBE2	57758	broad.mit.edu	37	11	9048913	9048913	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:9048913G>A	uc001mhh.1	-	19	2692	c.2612C>T	c.(2611-2613)ACC>ATC	p.T871I	SCUBE2_uc001mhi.1_Missense_Mutation_p.T843I|SCUBE2_uc001mhj.1_Intron	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	871	CUB.					extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		AGACGCACAGGTTTTCCGCAT	0.587													8	19					0	0	1	0	0
DENND5A	23258	broad.mit.edu	37	11	9164351	9164351	+	Silent	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:9164351A>T	uc001mhl.2	-	21	3684	c.3429T>A	c.(3427-3429)CTT>CTA	p.L1143L	DENND5A_uc001mhk.2_Silent_p.L486L|DENND5A_uc010rbw.1_Silent_p.L1143L	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	1143	RUN 2.									liver(1)	1						AGGCCGAGACAAGGCCACACT	0.552													30	60					0	0	1	0	0
IPO7	10527	broad.mit.edu	37	11	9459350	9459350	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:9459350T>G	uc001mho.2	+	21	2460	c.2318T>G	c.(2317-2319)GTT>GGT	p.V773G		NM_006391	NP_006382	O95373	IPO7_HUMAN	importin 7	773					interspecies interaction between organisms|signal transduction	Golgi apparatus|nuclear pore|soluble fraction	protein transporter activity|Ran GTPase binding|small GTPase regulator activity			lung(1)|breast(1)	2				all cancers(16;8.29e-09)|Epithelial(150;4.76e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0217)		ACAAGAGAGGTTAAGACAAGT	0.363													15	24					0	0	1	0	0
ZNF143	7702	broad.mit.edu	37	11	9517924	9517924	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:9517924A>G	uc001mhr.2	+	9	958	c.840A>G	c.(838-840)ACA>ACG	p.T280T	ZNF143_uc009yfu.2_Silent_p.T279T|ZNF143_uc010rby.1_Silent_p.T249T	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	280	C2H2-type 2.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		CATTTGCAACAGGTAAAAGTA	0.463													13	30					0	0	1	0	0
SBF2	81846	broad.mit.edu	37	11	9878064	9878064	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:9878064G>A	uc001mib.2	-	19	2442	c.2304C>T	c.(2302-2304)CTC>CTT	p.L768L	SBF2_uc001mif.3_Silent_p.L524L|uc001mig.2_Intron	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	768					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		ATGTTCTTAGGAGCTTGTTTT	0.473													30	68					0	0	1	0	0
AMPD3	272	broad.mit.edu	37	11	10518398	10518398	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:10518398G>A	uc001mio.1	+	10	1805	c.1470G>A	c.(1468-1470)GGG>GGA	p.G490G	AMPD3_uc010rbz.1_Silent_p.G331G|AMPD3_uc001min.1_Silent_p.G499G|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Silent_p.G497G|AMPD3_uc009yfy.2_Silent_p.G490G	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	490					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		CAAACTTTGGGAAGATGCTGG	0.498													33	66					0	0	1	0	0
MRVI1	10335	broad.mit.edu	37	11	10615147	10615147	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:10615147C>T	uc010rcc.1	-	17	2454	c.2068_splice	c.e17-1	p.N690_splice	uc001miu.2_Intron|MRVI1_uc001miw.2_Splice_Site_p.N681_splice|MRVI1_uc010rcb.1_Splice_Site_p.N682_splice|MRVI1_uc009ygb.1_Splice_Site_p.N375_splice|MRVI1_uc001mix.2_Splice_Site_p.N375_splice|MRVI1_uc001miz.2_Splice_Site_p.N599_splice|MRVI1_uc009ygc.1_Splice_Site_p.N599_splice|MRVI1_uc010rcd.1_Splice_Site_p.N484_splice|MRVI1_uc009ygd.1_Splice_Site_p.N375_splice|MRVI1_uc010rce.1_Splice_Site	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c						platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GAGGCATATTCTGCAGGAAGA	0.507													10	20					0	0	1	0	0
GALNTL4	374378	broad.mit.edu	37	11	11400639	11400639	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:11400639G>A	uc001mjo.2	-	4	1189	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	256	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		AGCCCACATTGAACTCCACGT	0.597													7	20					0	0	1	0	0
GALNTL4	374378	broad.mit.edu	37	11	11400809	11400809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:11400809C>T	uc001mjo.2	-	4	1019	c.598G>A	c.(598-600)GAA>AAA	p.E200K		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	200	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		TCCTTCAGTTCCTCTGTCAGG	0.532													13	48					0	0	1	0	0
BTBD10	84280	broad.mit.edu	37	11	13435174	13435174	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:13435174G>A	uc001mkz.2	-	6	968	c.711C>T	c.(709-711)ATC>ATT	p.I237I	BTBD10_uc010rcl.1_Silent_p.I245I|BTBD10_uc001mla.2_Silent_p.I221I|BTBD10_uc009ygn.2_RNA|BTBD10_uc010rcm.1_Silent_p.I189I|BTBD10_uc010rcn.1_Silent_p.I206I|BTBD10_uc009ygo.2_Silent_p.I189I	NM_032320	NP_115696	Q9BSF8	BTBDA_HUMAN	K+ channel tetramerization protein	237	BTB.					nucleus					0				Epithelial(150;0.0214)		CAGGACAACGGATTATTCCTG	0.338													12	40					0	0	1	0	0
FAR1	84188	broad.mit.edu	37	11	13732391	13732391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:13732391G>A	uc001mld.2	+	5	852	c.697G>A	c.(697-699)GGT>AGT	p.G233S	FAR1_uc009ygp.2_Missense_Mutation_p.G233S	NM_032228	NP_115604	Q8WVX9	FACR1_HUMAN	fatty acyl CoA reductase 1	233					ether lipid biosynthetic process	integral to membrane|peroxisomal matrix|peroxisomal membrane	protein binding			ovary(1)|skin(1)	2						ATCGATTGTTGGTGCCAGTTG	0.353													22	32					0	0	1	0	0
SPON1	10418	broad.mit.edu	37	11	14101567	14101567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:14101567C>T	uc001mle.2	+	6	1214	c.676C>T	c.(676-678)CGT>TGT	p.R226C		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	226	Spondin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		GGATTACCCTCGTGAGTAGAG	0.488													15	42					0	0	1	0	0
INSC	387755	broad.mit.edu	37	11	15267541	15267542	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:15267541_15267542GG>AA	uc001mly.2	+	13	1741_1742	c.1695_1696GG>AA	c.(1693-1698)GTGGAC>GTAAAC	p.D566N	INSC_uc001mlz.2_Missense_Mutation_p.D519N|INSC_uc001mma.2_3'UTR|INSC_uc010rcs.1_Missense_Mutation_p.D554N|INSC_uc001mmb.2_Missense_Mutation_p.D519N|INSC_uc001mmc.2_Missense_Mutation_p.D477N	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	566					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						CTCGGCTGGTGGACTCCTTCTT	0.545													19	46					0	0	1	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16838404	16838404	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:16838404C>T	uc001mmo.2	-	11	1824	c.1809G>A	c.(1807-1809)AGG>AGA	p.R603R	PLEKHA7_uc010rcu.1_Silent_p.R603R|PLEKHA7_uc010rcv.1_Silent_p.R177R|PLEKHA7_uc001mmn.2_Silent_p.R311R	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	603	Interaction with CTNND1.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TGTCCACACTCCTCCTCTGGT	0.657													27	78					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17464396	17464396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:17464396C>T	uc001mnc.2	-	10	1627	c.1501G>A	c.(1501-1503)GAG>AAG	p.E501K	ABCC8_uc010rcy.1_Missense_Mutation_p.E500K	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	501	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.		E -> K (in HHF1).		carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CGGAGCATCTCGTTGGTCTGC	0.622													39	50					0	0	1	0	0
ABCC8	6833	broad.mit.edu	37	11	17496474	17496474	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:17496474G>A	uc001mnc.2	-	2	375	c.249C>T	c.(247-249)TTC>TTT	p.F83F	ABCC8_uc010rcy.1_Silent_p.F83F	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	83	Helical; Name=2; (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	ACACCAGGACGAAGAGCAGCA	0.547													28	59					0	0	1	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195525	18195525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:18195525G>A	uc001mnv.1	+	1	1142	c.722G>A	c.(721-723)AGG>AAG	p.R241K		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	241	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						CTAATTTACAGGATGCACCTG	0.502													15	33					0	0	1	0	0
LOC494141	494141	broad.mit.edu	37	11	18231962	18231962	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:18231962G>A	uc009yhh.2	+	2		c.986G>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						GATTGGTGGGGAATTTCAGTC	0.403													10	23					0	0	1	0	0
IGSF22	283284	broad.mit.edu	37	11	18729410	18729410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:18729410C>T	uc009yht.2	-	20	3411	c.3221G>A	c.(3220-3222)CGA>CAA	p.R1074Q	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(4)|large_intestine(2)|kidney(1)	7						AAGCAAGATTCGGTACACCCC	0.527													3	12					0	0	1	0	0
IGSF22	283284	broad.mit.edu	37	11	18739511	18739511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:18739511C>T	uc009yht.2	-	9	1130	c.940G>A	c.(940-942)GAT>AAT	p.D314N	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	314	Ig-like 2.									ovary(4)|large_intestine(2)|kidney(1)	7						ATCCGCTTATCGCCCACGGAC	0.552													43	103					0	0	1	0	0
E2F8	79733	broad.mit.edu	37	11	19251088	19251088	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:19251088T>C	uc001mpm.2	-	10	2328	c.1806A>G	c.(1804-1806)AGA>AGG	p.R602R	E2F8_uc009yhv.2_Intron|E2F8_uc001mpn.3_Silent_p.R602R	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	602					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TCTTTGAGCCTCTTTCTCCAG	0.522													51	87					0	0	1	0	0
DBX1	120237	broad.mit.edu	37	11	20178090	20178090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:20178090C>T	uc001mpw.1	-	4	819	c.819G>A	c.(817-819)ATG>ATA	p.M273I		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	234	Homeobox.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TCCGCCATTTCATGCGTCGGT	0.637													27	44					0	0	1	0	0
SLC6A5	9152	broad.mit.edu	37	11	20625925	20625925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:20625925G>A	uc001mqd.2	+	3	907	c.634G>A	c.(634-636)GGC>AGC	p.G212S	SLC6A5_uc009yic.2_Intron	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	212	Helical; Name=1; (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AGTGGGGCTGGGCAATGTCTG	0.637													46	130					0	0	1	0	0
NELL1	4745	broad.mit.edu	37	11	20805234	20805234	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:20805234A>T	uc001mqe.2	+	3	346	c.193A>T	c.(193-195)AGA>TGA	p.R65*	NELL1_uc001mqf.2_Nonsense_Mutation_p.R65*|NELL1_uc009yid.2_Nonsense_Mutation_p.R93*|NELL1_uc010rdo.1_Nonsense_Mutation_p.R65*|NELL1_uc010rdp.1_Translation_Start_Site	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	65					cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						AGACATAGAAAGAGAGATCCA	0.259													10	23					0	0	1	0	0
ANO5	203859	broad.mit.edu	37	11	22249119	22249119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:22249119C>T	uc001mqi.2	+	7	952	c.635C>T	c.(634-636)TCA>TTA	p.S212L	ANO5_uc001mqj.2_Missense_Mutation_p.S211L	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	212	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CCATCCTCATCAAGAAACAGA	0.438													19	69					0	0	1	0	0
ANO3	63982	broad.mit.edu	37	11	26655809	26655809	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:26655809C>T	uc001mqt.3	+	19	2077	c.1932C>T	c.(1930-1932)TTC>TTT	p.F644F	ANO3_uc010rdr.1_Silent_p.F628F|ANO3_uc010rds.1_Silent_p.F483F|ANO3_uc010rdt.1_Silent_p.F498F	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	644	Helical; (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TGTTCCTCTTCCAGTTTGTCA	0.368													6	27					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	31128377	31128377	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:31128377T>G	uc009yjk.1	-	1	131	c.62A>C	c.(61-63)CAA>CCA	p.Q21P	uc009yjl.1_5'UTR|DCDC1_uc001msu.1_Missense_Mutation_p.Q192P					RecName: Full=Doublecortin domain-containing protein 5;																		CCAAATTTTTTGCTCATTCTT	0.423											OREG0020856	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	35					0	0	1	0	0
DCDC1	341019	broad.mit.edu	37	11	31312208	31312208	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:31312208C>A	uc001msv.2	-	7	1148	c.946G>T	c.(946-948)GAA>TAA	p.E316*	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	316					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					TTCATTGTTTCTTTTCCCACT	0.323													15	28					2.48551e-13	2.50934e-13	1	1	0
DCDC1	341019	broad.mit.edu	37	11	31312210	31312210	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:31312210T>A	uc001msv.2	-	7	1146	c.944A>T	c.(943-945)AAA>ATA	p.K315I	DCDC1_uc001msu.1_Intron	NM_181807	NP_861523	P59894	DCDC1_HUMAN	doublecortin domain containing 1	315					intracellular signal transduction					skin(1)	1	Lung SC(675;0.225)					CATTGTTTCTTTTCCCACTGT	0.323													15	31					0	0	1	0	0
CCDC73	493860	broad.mit.edu	37	11	32632691	32632691	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:32632691A>G	uc001mtv.2	-	17	3061	c.3017T>C	c.(3016-3018)TTT>TCT	p.F1006S		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	1006										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTCTGTGGGAAAAGAGGAATC	0.398													60	103					0	0	1	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34113512	34113512	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:34113512A>G	uc001mvh.1	+	15	1803	c.1614A>G	c.(1612-1614)CAA>CAG	p.Q538Q	CAPRIN1_uc001mvg.2_Silent_p.Q538Q|CAPRIN1_uc001mvi.2_Silent_p.Q538Q|CAPRIN1_uc001mvj.1_Silent_p.Q457Q	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	538					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				TAAAACAGCAAAATCAGTACC	0.373													16	36					0	0	1	0	0
PRDM11	56981	broad.mit.edu	37	11	45246215	45246215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:45246215C>T	uc001myo.2	+	8	1541	c.1292C>T	c.(1291-1293)TCC>TTC	p.S431F		NM_020229	NP_064614	Q9NQV5	PRD11_HUMAN	PR domain containing 11	431										upper_aerodigestive_tract(1)	1						GCCGAGGCCTCCCTTGCATCT	0.547													64	182					0	0	1	0	0
CHST1	8534	broad.mit.edu	37	11	45671859	45671859	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:45671859G>A	uc001mys.1	-	4	1286	c.615C>T	c.(613-615)ATC>ATT	p.I205I		NM_003654	NP_003645	O43916	CHST1_HUMAN	carbohydrate (keratan sulfate Gal-6)	205	Lumenal (Potential).				galactose metabolic process|inflammatory response|keratan sulfate metabolic process	Golgi membrane|integral to membrane	keratan sulfotransferase activity			skin(4)|pancreas(1)	5				GBM - Glioblastoma multiforme(35;3e-06)|BRCA - Breast invasive adenocarcinoma(625;0.0781)		GCACCGTCTTGATGGCCACGT	0.687													26	35					0	0	1	0	0
CRY2	1408	broad.mit.edu	37	11	45868996	45868996	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:45868996C>T	uc010rgn.1	+	1	40	c.18C>T	c.(16-18)GTC>GTT	p.V6V	CRY2_uc009ykw.2_Intron	NM_021117	NP_066940	Q49AN0	CRY2_HUMAN	cryptochrome 2 (photolyase-like) isoform 1	Error:Variant_position_missing_in_Q49AN0_after_alignment					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	blue light photoreceptor activity|damaged DNA binding|DNA photolyase activity|nucleotide binding|protein binding|single-stranded DNA binding			central_nervous_system(1)	1						GGGTCCACGTCGCCTACCGGG	0.537													8	16					0	0	1	0	0
CRY2	1408	broad.mit.edu	37	11	45868998	45868998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:45868998C>T	uc010rgn.1	+	1	42	c.20C>T	c.(19-21)GCC>GTC	p.A7V	CRY2_uc009ykw.2_Intron	NM_021117	NP_066940	Q49AN0	CRY2_HUMAN	cryptochrome 2 (photolyase-like) isoform 1	Error:Variant_position_missing_in_Q49AN0_after_alignment					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	blue light photoreceptor activity|damaged DNA binding|DNA photolyase activity|nucleotide binding|protein binding|single-stranded DNA binding			central_nervous_system(1)	1						GTCCACGTCGCCTACCGGGGC	0.542													7	15					0	0	1	0	0
GYLTL1B	120071	broad.mit.edu	37	11	45950285	45950286	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:45950285_45950286CC>TT	uc001nbv.1	+	14	2166_2167	c.2055_2056CC>TT	c.(2053-2058)TGCCTC>TGTTTC	p.L686F	GYLTL1B_uc001nbw.1_Missense_Mutation_p.L655F|GYLTL1B_uc001nbx.1_Missense_Mutation_p.L686F|GYLTL1B_uc001nby.1_Missense_Mutation_p.L369F|GYLTL1B_uc001nbz.1_Missense_Mutation_p.A34V	NM_152312	NP_689525	Q8N3Y3	LARG2_HUMAN	glycosyltransferase-like 1B	686	Lumenal (Potential).				muscle cell homeostasis	Golgi membrane|integral to membrane	transferase activity, transferring glycosyl groups			ovary(2)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.226)		ATCGTGACTGCCTCCAGGCCCT	0.649													21	85					0	0	1	0	0
AMBRA1	55626	broad.mit.edu	37	11	46430162	46430162	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:46430162G>A	uc010rgu.1	-	17	3664	c.3304C>T	c.(3304-3306)CAG>TAG	p.Q1102*	AMBRA1_uc010rgt.1_Intron|AMBRA1_uc009ylc.1_Nonsense_Mutation_p.Q1073*|AMBRA1_uc001ncu.1_Nonsense_Mutation_p.Q1012*|AMBRA1_uc001ncv.2_Nonsense_Mutation_p.Q1105*|AMBRA1_uc001ncw.2_Nonsense_Mutation_p.Q983*|AMBRA1_uc001ncx.2_Nonsense_Mutation_p.Q1042*	NM_017749	NP_060219	Q9C0C7	AMRA1_HUMAN	activating molecule in beclin-1-regulated	1102					autophagy|cell differentiation|nervous system development	autophagic vacuole|cytoplasmic vesicle				large_intestine(1)|ovary(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(35;0.0435)|Lung(87;0.182)		TGGGTGCCCTGAGATGTCACT	0.612													25	29					0	0	1	0	0
MADD	8567	broad.mit.edu	37	11	47303127	47303127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:47303127C>T	uc001ner.1	+	8	1483	c.1292C>T	c.(1291-1293)GCC>GTC	p.A431V	MADD_uc001neq.2_Missense_Mutation_p.A431V|MADD_uc001nev.1_Missense_Mutation_p.A431V|MADD_uc001nes.1_Missense_Mutation_p.A431V|MADD_uc001net.1_Missense_Mutation_p.A431V|MADD_uc009yln.1_Missense_Mutation_p.A431V|MADD_uc001neu.1_Missense_Mutation_p.A431V|MADD_uc001nex.2_Missense_Mutation_p.A431V|MADD_uc001nez.2_Missense_Mutation_p.A431V|MADD_uc001new.2_Missense_Mutation_p.A431V	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	431					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		GTTCCACAGGCCTTGGCCAGC	0.512													13	43					0	0	1	0	0
MYBPC3	4607	broad.mit.edu	37	11	47353722	47353722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:47353722C>T	uc001nfa.3	-	32	3770	c.3715G>A	c.(3715-3717)GAG>AAG	p.E1239K		NM_000256	NP_000247	Q14896	MYPC3_HUMAN	myosin binding protein C, cardiac	1238	Ig-like C2-type 7.				cardiac muscle contraction|cell adhesion|muscle filament sliding|regulation of muscle filament sliding|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	C zone|cytosol|striated muscle myosin thick filament	actin binding|ATPase activator activity|metal ion binding|myosin heavy chain binding|structural constituent of muscle|titin binding			ovary(2)|central_nervous_system(1)	3				Lung(87;0.176)		TTTCTAATCTCCAGAGTCAAC	0.572													23	57					0	0	1	0	0
SPI1	6688	broad.mit.edu	37	11	47397211	47397211	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:47397211G>T	uc001nfc.1	-	2	338	c.115C>A	c.(115-117)CTC>ATC	p.L39I	SPI1_uc001nfb.1_Missense_Mutation_p.L40I|SLC39A13_uc001nfd.2_Intron|SPI1_uc009ylp.1_Missense_Mutation_p.L33I	NM_003120	NP_003111	P17947	SPI1_HUMAN	hematopoietic transcription factor PU.1 isoform	39					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|regulation of erythrocyte differentiation	nucleus	protein binding|RNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)	2				Lung(87;0.0967)		TCACTGCTGAGATAGGGGTAA	0.602													35	117					2.75727e-19	2.80194e-19	1	1	0
FNBP4	23360	broad.mit.edu	37	11	47741550	47741550	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:47741550G>A	uc009ylv.2	-	16	3047	c.2894C>T	c.(2893-2895)TCC>TTC	p.S965F	FNBP4_uc001ngi.2_Missense_Mutation_p.S279F|FNBP4_uc001ngj.2_Missense_Mutation_p.S872F	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	965										ovary(1)	1						CTCTTCACTGGAACTAGAATT	0.433													15	27					0	0	1	0	0
FNBP4	23360	broad.mit.edu	37	11	47767640	47767641	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:47767640_47767641GG>AA	uc009ylv.2	-	7	1365_1366	c.1212_1213CC>TT	c.(1210-1215)ACCCTT>ACTTTT	p.L405F	FNBP4_uc001ngj.2_Missense_Mutation_p.L312F|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	405										ovary(1)	1						TCCAGTTCAAGGGTATCTTGTT	0.396													31	82					0	0	1	0	0
PTPRJ	5795	broad.mit.edu	37	11	48152026	48152026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:48152026C>T	uc001ngp.3	+	8	1728	c.1373C>T	c.(1372-1374)TCT>TTT	p.S458F	PTPRJ_uc001ngo.3_Missense_Mutation_p.S458F	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	458	Extracellular (Potential).|Fibronectin type-III 5.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GTTCCAGTTTCTGACTTCCGA	0.463													22	52					0	0	1	0	0
OR4S1	256148	broad.mit.edu	37	11	48328206	48328206	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:48328206G>A	uc010rhu.1	+	1	432	c.432G>A	c.(430-432)GGG>GGA	p.G144G		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGCTAGCGGGGGCCTCCTGGT	0.567													10	49					0	0	1	0	0
LOC440040	440040	broad.mit.edu	37	11	49598123	49598123	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:49598123G>A	uc010rhy.1	+	2	714	c.236G>A	c.(235-237)AGC>AAC	p.S79N	LOC440040_uc009ymb.2_Missense_Mutation_p.S79N	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						CTAGAGCAGAGCATTGAGTTC	0.527													5	22					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411636	51411636	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:51411636T>A	uc001nhi.1	-	1	760	c.760A>T	c.(760-762)ATA>TTA	p.I254L		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				CTAACATATATGAAAATACAG	0.393													9	54					0	0	1	0	0
OR4C46	119749	broad.mit.edu	37	11	51515952	51515952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:51515952G>A	uc010ric.1	+	1	671	c.671G>A	c.(670-672)AGG>AAG	p.R224K		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGCTCCCTAAGGACTCATAGC	0.483													14	46					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136144	55136144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55136144G>A	uc010rif.1	+	1	785	c.785G>A	c.(784-786)CGA>CAA	p.R262Q		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	262	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GAAGGGAAACGAAAAGCTTTC	0.438													25	60					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55540930	55540930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55540930G>A	uc010ril.1	+	1	17	c.17G>A	c.(16-18)AGA>AAA	p.R6K		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R6I(1)		ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				GCATCTGAAAGAAATCAAAGC	0.378													27	69					0	0	1	0	0
OR5D14	219436	broad.mit.edu	37	11	55563600	55563600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55563600C>T	uc010rim.1	+	1	569	c.569C>T	c.(568-570)TCT>TTT	p.S190F		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				ATCTCTGTGTCTGGCTCTGAT	0.448													54	134					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55579402	55579402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55579402G>A	uc001nhw.1	+	1	460	c.460G>A	c.(460-462)GTG>ATG	p.V154M		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				CTGTGGGACGGTGTGTTCTCT	0.458													38	94					0	0	1	0	0
OR5L1	219437	broad.mit.edu	37	11	55579670	55579670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55579670C>T	uc001nhw.1	+	1	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				ACCTGTGCTTCCCACCTCACA	0.522													25	60					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587294	55587294	+	Silent	SNP	C	T	T	rs145410438		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55587294C>T	uc010rin.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.F63F(1)		skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TGTACTTTTTCCTCAGCCAAC	0.418													60	117					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587350	55587350	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55587350T>G	uc010rin.1	+	1	245	c.245T>G	c.(244-246)ATG>AGG	p.M82R		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				GCTCCCAAGATGTTGGTGAAC	0.398													65	153					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55797981	55797981	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55797981G>A	uc010riw.1	+	1	87	c.87G>A	c.(85-87)TTG>TTA	p.L29L		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					CACTGTTCTTGGTATTCCTTC	0.328													15	35					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798066	55798066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55798066C>T	uc010riw.1	+	1	172	c.172C>T	c.(172-174)CCC>TCC	p.P58S		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					CCTTCAAATTCCCATGTATTA	0.338													11	24					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55872591	55872591	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55872591C>T	uc010riy.1	+	1	73	c.73C>T	c.(73-75)CAG>TAG	p.Q25*		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TGAAGAGATCCAGATGGCTCT	0.433										HNSCC(53;0.14)			56	148					0	0	1	0	0
OR8H2	390151	broad.mit.edu	37	11	55873104	55873104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55873104G>A	uc010riy.1	+	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					ATACAACACCGAAATCCTGAT	0.388										HNSCC(53;0.14)			71	131					0	0	1	0	0
OR5J2	282775	broad.mit.edu	37	11	55944578	55944578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55944578G>A	uc010rjb.1	+	1	485	c.485G>A	c.(484-486)AGC>AAC	p.S162N		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	162	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					CACACAATCAGCTTGAGGAGA	0.438													22	68					0	0	1	0	0
OR5T2	219464	broad.mit.edu	37	11	55999642	55999642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:55999642C>T	uc010rjc.1	-	1	1020	c.1020G>A	c.(1018-1020)ATG>ATA	p.M340I		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	340	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ACATTTTTTTCATTGAGTCTT	0.333													8	36					0	0	1	0	0
OR5T3	390154	broad.mit.edu	37	11	56020266	56020266	+	Silent	SNP	C	T	T	rs138884931		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:56020266C>T	uc010rjd.1	+	1	591	c.591C>T	c.(589-591)TCC>TCT	p.S197S		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					TTAGCCTGTCCTTCTGTGGAT	0.433													61	126					0	0	1	0	0
OR5M11	219487	broad.mit.edu	37	11	56310292	56310292	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:56310292A>C	uc010rjl.1	-	1	442	c.442T>G	c.(442-444)TAT>GAT	p.Y148D		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	148	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCATAGACATAGGGAAATGTG	0.522													10	18					0	0	1	0	0
OR5M10	390167	broad.mit.edu	37	11	56344943	56344943	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:56344943G>A	uc001niz.1	-	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTTCTGAGAGGAAATTGTGCA	0.433													17	34					0	0	1	0	0
OR10W1	81341	broad.mit.edu	37	11	58034436	58034436	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:58034436T>C	uc001nmq.1	-	1	1297	c.895A>G	c.(895-897)AAC>GAC	p.N299D		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				GAAAGGCAGTTCCTGGTAAGA	0.498													32	77					0	0	1	0	0
OR5AN1	390195	broad.mit.edu	37	11	59132000	59132000	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:59132000G>A	uc010rks.1	+	1	69	c.69G>A	c.(67-69)AGG>AGA	p.R23R		NM_001004729	NP_001004729	Q8NGI8	O5AN1_HUMAN	olfactory receptor, family 5, subfamily AN,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATTTTCCCAGGATCATAAAAG	0.433													11	46					0	0	1	0	0
OR5A2	219981	broad.mit.edu	37	11	59189496	59189496	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:59189496C>A	uc010rkt.1	-	1	931	c.931G>T	c.(931-933)GGG>TGG	p.G311W		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGAGAAATCCCGGGGTCCCTT	0.413													35	80					1.22384e-17	1.23982e-17	1	1	0
MS4A1	931	broad.mit.edu	37	11	60230595	60230595	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:60230595G>A	uc001npp.2	+	4	695	c.279_splice	c.e4+1	p.M93_splice	MS4A1_uc009ymy.1_Splice_Site_p.M93_splice|MS4A1_uc001npq.2_Splice_Site_p.M93_splice|MS4A1_uc009yna.2_Splice_Site_p.M93_splice|MS4A1_uc009ymz.2_Splice_Site_p.M93_splice|MS4A1_uc010rlc.1_Intron	NM_152866	NP_690605	P11836	CD20_HUMAN	membrane-spanning 4-domains, subfamily A, member						B cell activation|immune response	integral to plasma membrane				ovary(3)|lung(2)	5					Ibritumomab(DB00078)|Rituximab(DB00073)|Tositumomab(DB00081)	AGGCATTATGGTGAGTAAAAG	0.473													31	67					0	0	1	0	0
MS4A10	341116	broad.mit.edu	37	11	60557983	60557983	+	Missense_Mutation	SNP	G	A	A	rs149409172		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:60557983G>A	uc001npz.1	+	2	271	c.175G>A	c.(175-177)GAG>AAG	p.E59K		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	59	Cytoplasmic (Potential).					integral to membrane	receptor activity	p.E59K(1)		ovary(1)|skin(1)	2						CCTTCTTAAGGAGCTGGGGGT	0.622													15	23					0	0	1	0	0
SLC15A3	51296	broad.mit.edu	37	11	60705349	60705349	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:60705349C>T	uc001nqn.2	-	7	1818	c.1584G>A	c.(1582-1584)AAG>AAA	p.K528K	SLC15A3_uc001nqo.2_3'UTR	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	528					oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						CACCAAAGTCCTTGGGGCAGT	0.607													7	19					0	0	1	0	0
C11orf10	746	broad.mit.edu	37	11	61557365	61557365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:61557365G>A	uc001nsf.2	-	3	197	c.142C>T	c.(142-144)CGT>TGT	p.R48C	FEN1_uc001nsg.2_5'Flank	NM_014206	NP_055021	P61165	CK010_HUMAN	hypothetical protein LOC746	48						integral to membrane				breast(1)	1						TAGATATCACGAGTGTACTTG	0.542													8	7					0	0	1	0	0
SLC22A25	387601	broad.mit.edu	37	11	62997056	62997056	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:62997056G>A	uc001nwr.1	-	1	69	c.69C>T	c.(67-69)TTC>TTT	p.F23F	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Silent_p.F23F	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	23	Helical; Name=1; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						ACATTATAAGGAAAACCATCT	0.468													18	34					0	0	1	0	0
ESRRA	2101	broad.mit.edu	37	11	64081797	64081797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:64081797C>T	uc001nzq.1	+	4	706	c.529C>T	c.(529-531)CCT>TCT	p.P177S	ESRRA_uc001nzr.1_Missense_Mutation_p.P177S|ESRRA_uc001nzs.1_Missense_Mutation_p.P177S|ESRRA_uc009ypn.1_RNA	NM_004451	NP_004442	P11474	ERR1_HUMAN	estrogen-related receptor alpha	177					positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein domain specific binding|sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0						GGGCCCCTTCCCTGCTGGGCC	0.672													5	5					0	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64109170	64109170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:64109170G>A	uc001nzy.2	+	7	675	c.631G>A	c.(631-633)GGG>AGG	p.G211R	CCDC88B_uc009ypo.1_Missense_Mutation_p.G208R|CCDC88B_uc001nzz.1_5'Flank	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	211					microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GAGCCTGATGGGGACACTGTC	0.692													9	22					0	0	1	0	0
ATG2A	23130	broad.mit.edu	37	11	64681879	64681879	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:64681879G>A	uc001obx.2	-	2	380	c.265C>T	c.(265-267)CTG>TTG	p.L89L	ATG2A_uc010rnt.1_Silent_p.L89L	NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	89							protein binding			ovary(1)|central_nervous_system(1)	2						TCGGTGAGCAGAGCAGCCCAG	0.682													11	15					0	0	1	0	0
OVOL1	5017	broad.mit.edu	37	11	65561716	65561716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:65561716G>A	uc001ofp.2	+	2	631	c.315G>A	c.(313-315)ATG>ATA	p.M105I	OVOL1_uc001ofq.2_Missense_Mutation_p.M43I	NM_004561	NP_004552	O14753	OVOL1_HUMAN	OVO-like 1 binding protein	105					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				READ - Rectum adenocarcinoma(159;0.17)		GCACCAAGATGAAGGTAATGC	0.617													21	22					0	0	1	0	0
PELI3	246330	broad.mit.edu	37	11	66241232	66241232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:66241232C>T	uc001oic.3	+	7	840	c.676C>T	c.(676-678)CCA>TCA	p.P226S	PELI3_uc001oib.2_Missense_Mutation_p.P226S|PELI3_uc001oid.3_Missense_Mutation_p.P202S|PELI3_uc001oie.3_Missense_Mutation_p.P77S|PELI3_uc010rpd.1_Missense_Mutation_p.P67S	NM_145065	NP_659502	Q8N2H9	PELI3_HUMAN	pellino 3 alpha isoform 1	226						cytosol	protein binding			ovary(1)	1						ATGGCGGACCCCAGATGGCCT	0.667													13	48					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66359225	66359225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:66359225G>A	uc001oiq.3	-	1	1330	c.1262C>T	c.(1261-1263)TCC>TTC	p.S421F	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	421										ovary(1)|skin(1)	2						AAGTGGAAAGGATTTGGGGGG	0.567													13	34					0	0	1	0	0
RCE1	9986	broad.mit.edu	37	11	66613527	66613527	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:66613527G>A	uc001ojk.1	+	8	995	c.951G>A	c.(949-951)TTG>TTA	p.L317L	RCE1_uc001ojl.1_Silent_p.L213L	NM_005133	NP_005124	Q9Y256	FACE2_HUMAN	prenyl protein peptidase RCE1 isoform 1	317					proteolysis	endoplasmic reticulum membrane|integral to plasma membrane	metalloendopeptidase activity			ovary(1)|breast(1)	2						GTGTGCTTTTGGAGCGGGCAG	0.632													31	82					0	0	1	0	0
RAD9A	5883	broad.mit.edu	37	11	67161032	67161032	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:67161032C>T	uc001okr.2	+	4	393	c.300C>T	c.(298-300)TCC>TCT	p.S100S	RAD9A_uc001oks.2_5'Flank	NM_004584	NP_004575	Q99638	RAD9A_HUMAN	RAD9 homolog	100					DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint	nucleoplasm	3'-5' exonuclease activity|exodeoxyribonuclease III activity|histone deacetylase binding|protein kinase binding|SH3 domain binding				0			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			GCTGCATCTCCCTGAATGGCC	0.602								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					11	65					0	0	1	0	0
CABP4	57010	broad.mit.edu	37	11	67223794	67223794	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:67223794T>G	uc001olo.2	+	3	499	c.422T>G	c.(421-423)TTT>TGT	p.F141C	CABP4_uc001oln.2_Missense_Mutation_p.F36C	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	141	EF-hand 1.				visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			TTCGAGGAGTTTGACACTGAC	0.652													28	84					0	0	1	0	0
ALDH3B2	222	broad.mit.edu	37	11	67434405	67434405	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:67434405A>C	uc001omr.2	-	3	441	c.2T>G	c.(1-3)ATG>AGG	p.M1R	ALDH3B2_uc001oms.2_Missense_Mutation_p.M1R|ALDH3B2_uc009ysa.1_Missense_Mutation_p.M1R	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	1					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	TTCATCCTTCATCCAGGCCTG	0.617													23	48					0	0	1	0	0
SHANK2	22941	broad.mit.edu	37	11	70336414	70336414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:70336414G>A	uc001oqc.2	-	19	2596	c.2518C>T	c.(2518-2520)CCT>TCT	p.P840S	SHANK2_uc010rqn.1_Missense_Mutation_p.P252S|SHANK2_uc001opz.2_Missense_Mutation_p.P245S|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Missense_Mutation_p.P242S|SHANK2_uc001opy.2_5'UTR|SHANK2_uc010rqo.1_Missense_Mutation_p.P53S	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	461					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			GTACCTCGAGGGATGCCCAGA	0.567													22	53					0	0	1	0	0
ARAP1	116985	broad.mit.edu	37	11	72421435	72421435	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:72421435G>A	uc001osu.2	-	10	1600	c.1411C>T	c.(1411-1413)CTA>TTA	p.L471L	ARAP1_uc001osv.2_Silent_p.L471L|ARAP1_uc001osr.2_Silent_p.L231L|ARAP1_uc001oss.2_Silent_p.L226L|ARAP1_uc009yth.2_Silent_p.L226L|ARAP1_uc010rre.1_Silent_p.L226L	NM_001040118	NP_001035207	Q96P48	ARAP1_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	471	PH 2.				actin filament reorganization involved in cell cycle|negative regulation of stress fiber assembly|positive regulation of Cdc42 GTPase activity|positive regulation of filopodium assembly|regulation of ARF GTPase activity|regulation of cell shape|regulation of cellular component movement|small GTPase mediated signal transduction	cytosol|Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|protein binding|Rho GTPase activator activity|zinc ion binding			skin(1)	1						AGCACCTCTAGATTCTTGTAG	0.592													48	120					0	0	1	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74876915	74876915	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:74876915C>T	uc001owb.2	+	4	756	c.369C>T	c.(367-369)ATC>ATT	p.I123I	SLCO2B1_uc010rrq.1_Intron|SLCO2B1_uc010rrr.1_Intron|SLCO2B1_uc010rrs.1_Silent_p.I7I|SLCO2B1_uc001owc.2_Silent_p.I7I|SLCO2B1_uc001owd.2_Silent_p.I101I	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	123	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	ATGGGGCTATCCTTGTGGCCC	0.592													57	112					0	0	1	0	0
GDPD5	81544	broad.mit.edu	37	11	75168812	75168812	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:75168812C>T	uc001owo.3	-	6	778	c.241G>A	c.(241-243)GGC>AGC	p.G81S	GDPD5_uc001owp.3_Missense_Mutation_p.G81S|GDPD5_uc009yuc.2_5'UTR|GDPD5_uc009yud.2_Intron|GDPD5_uc009yue.1_Missense_Mutation_p.G2S	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	81	Extracellular (Potential).				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						CTCCAGTAGCCCATGCGGTTG	0.622													12	41					0	0	1	0	0
LRRC32	2615	broad.mit.edu	37	11	76371759	76371759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:76371759G>A	uc001oxq.3	-	3	1121	c.878C>T	c.(877-879)CCT>CTT	p.P293L	LRRC32_uc001oxr.3_Missense_Mutation_p.P293L|LRRC32_uc010rsf.1_Missense_Mutation_p.P293L	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	293	Extracellular (Potential).					integral to plasma membrane					0						GCCCTCGGAAGGTGCGTGGAT	0.637													13	29					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78440676	78440676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:78440676C>T	uc001ozl.3	-	22	3614	c.3151G>A	c.(3151-3153)GAA>AAA	p.E1051K		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1051	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						ATAGAGATTTCCTCCTGCAAA	0.582													39	72					0	0	1	0	0
C11orf82	220042	broad.mit.edu	37	11	82643743	82643743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:82643743C>T	uc001ozt.2	+	6	1607	c.1363C>T	c.(1363-1365)CAT>TAT	p.H455Y	C11orf82_uc010rsr.1_Missense_Mutation_p.H154Y|C11orf82_uc010rss.1_Missense_Mutation_p.H154Y|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	455					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						TGATAAATTTCATGCAGACCA	0.423													17	28					0	0	1	0	0
PCF11	51585	broad.mit.edu	37	11	82868563	82868563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:82868563G>A	uc001ozx.3	+	1	427	c.82G>A	c.(82-84)GAC>AAC	p.D28N	PCF11_uc010rsu.1_Missense_Mutation_p.D28N|PCF11_uc001ozy.2_Missense_Mutation_p.D28N	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	28	CID.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						ATCGCTCGAAGACCTGACCTT	0.632													38	87					0	0	1	0	0
ME3	10873	broad.mit.edu	37	11	86153922	86153922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:86153922C>T	uc001pbz.2	-	13	1848	c.1594G>A	c.(1594-1596)GGG>AGG	p.G532R	ME3_uc001pca.2_Missense_Mutation_p.G532R|ME3_uc009yvk.2_Missense_Mutation_p.G532R	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	532					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	TAGAGTCTCCCCTGGGACAGA	0.532													27	71					0	0	1	0	0
FOLH1B	219595	broad.mit.edu	37	11	89424095	89424095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:89424095G>A	uc001pda.2	+	11	1271	c.745G>A	c.(745-747)GAA>AAA	p.E249K		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	249					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						CAGTGTCTATGAAACATATGA	0.368													10	36					0	0	1	0	0
UBTFL1	642623	broad.mit.edu	37	11	89819193	89819193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:89819193C>T	uc010rub.1	+	1	76	c.76C>T	c.(76-78)CGC>TGC	p.R26C		NM_001143975	NP_001137447	P0CB47	UBFL1_HUMAN	upstream binding transcription factor, RNA	26					multicellular organismal development	cytoplasm|nucleus	DNA binding				0						GGAGAATAATCGCCCATCTGA	0.418													26	76					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92087738	92087738	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:92087738T>A	uc001pdj.3	+	1	2477	c.2460T>A	c.(2458-2460)AAT>AAA	p.N820K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	820	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TGACCATCAATGTGGAGGATG	0.408										TCGA Ovarian(4;0.039)			18	28					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92616136	92616136	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:92616136T>C	uc001pdj.3	+	23	12531	c.12514T>C	c.(12514-12516)TTC>CTC	p.F4172L	FAT3_uc001pdi.3_Missense_Mutation_p.F612L	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	4172	Helical; (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGTGGTTCTCTTCATAGTCTT	0.572										TCGA Ovarian(4;0.039)			5	8					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93797524	93797524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:93797524G>A	uc001pep.2	+	4	813	c.656G>A	c.(655-657)CGG>CAG	p.R219Q		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	219	Plastocyanin-like 2.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TCAGGGACACGGAATGATGTG	0.388													8	27					0	0	1	0	0
FOLR4	390243	broad.mit.edu	37	11	94039822	94039822	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:94039822C>T	uc010rud.1	+	2	282	c.282C>T	c.(280-282)ATC>ATT	p.I94I		NM_001080486	NP_001073955	A6ND01	FOLR4_HUMAN	folate receptor 4 (delta) homolog	94						extracellular region	folic acid binding|receptor activity			ovary(1)	1						TCCAGGCTATCTGCTTCTATG	0.562													28	54					0	0	1	0	0
MAML2	84441	broad.mit.edu	37	11	95712866	95712866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:95712866G>A	uc001pfw.1	-	5	4002	c.2717C>T	c.(2716-2718)CCT>CTT	p.P906L		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	906					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				TGGCATCATAGGGTTGTTTTG	0.408			T	MECT1|CRTC3	salivary gland mucoepidermoid								32	72					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99786792	99786792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:99786792G>A	uc001pga.2	+	7	923	c.584G>A	c.(583-585)GGA>GAA	p.G195E	CNTN5_uc009ywv.1_Missense_Mutation_p.G195E|CNTN5_uc001pfz.2_Missense_Mutation_p.G195E|CNTN5_uc001pgb.2_Missense_Mutation_p.G121E	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	195					cell adhesion	anchored to membrane|plasma membrane	protein binding	p.G195E(1)		skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ACAGATCTGGGAAATTTTAGT	0.423													5	10					0	0	1	0	0
BIRC3	330	broad.mit.edu	37	11	102198822	102198822	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:102198822C>T	uc001pgx.2	+	5	1215	c.993C>T	c.(991-993)ATC>ATT	p.I331I		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	331					anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		AGGAGTTCATCCGTCAAGTTC	0.318			T	MALT1	MALT								12	40					0	0	1	0	0
MMP20	9313	broad.mit.edu	37	11	102465482	102465482	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:102465482G>A	uc001phc.2	-	7	973	c.960C>T	c.(958-960)TTC>TTT	p.F320F		NM_004771	NP_004762	O60882	MMP20_HUMAN	matrix metalloproteinase 20 preproprotein	320	Hemopexin-like 1.				proteolysis|regulation of enamel mineralization	extracellular space|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|protein binding|zinc ion binding			urinary_tract(1)|skin(1)	2	all_cancers(8;8.95e-05)|all_epithelial(12;0.00227)|Lung NSC(15;0.139)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0033)	Epithelial(9;0.0216)|Lung(13;0.0711)|all cancers(10;0.0889)|LUSC - Lung squamous cell carcinoma(19;0.13)	BRCA - Breast invasive adenocarcinoma(274;0.0161)		GCCGTCTCCAGAAAATCCTAT	0.418													13	24					0	0	1	0	0
MMP13	4322	broad.mit.edu	37	11	102826187	102826187	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:102826187G>A	uc001phl.2	-	2	184	c.156C>T	c.(154-156)CTC>CTT	p.L52L		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	52					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GGATTCCCGCGAGATTTGTAG	0.463													54	104					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103124109	103124109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:103124109C>T	uc001pho.2	+	66	10282	c.10138C>T	c.(10138-10140)CCA>TCA	p.P3380S	DYNC2H1_uc001phn.1_Missense_Mutation_p.P3387S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3380	AAA 5 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TCCTTTTATTCCACCGGATGC	0.363													20	38					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103128387	103128387	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:103128387C>T	uc001pho.2	+	69	10656	c.10512C>T	c.(10510-10512)TTC>TTT	p.F3504F	DYNC2H1_uc001phn.1_Silent_p.F3511F|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	3504					cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AGATGTACTTCATTATTTCTG	0.423													4	23					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	104777798	104777798	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:104777798C>T	uc001phy.2	-	1		c.1635G>A			uc001phz.2_RNA|uc001pia.1_Intron					Homo sapiens mRNA; cDNA DKFZp667O0320 (from clone DKFZp667O0320).																		AGACATGACTCCCAAAGATGC	0.458													6	3					0	0	1	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106849459	106849459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:106849459C>T	uc001pjg.1	-	3	763	c.373G>A	c.(373-375)GAT>AAT	p.D125N	GUCY1A2_uc010rvo.1_Missense_Mutation_p.D125N|GUCY1A2_uc009yxn.1_Missense_Mutation_p.D125N	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	125					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		TTTTCTGCATCCCTGTAACTA	0.383													10	24					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108384070	108384070	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:108384070T>C	uc001pkk.2	-	6	2275	c.2164A>G	c.(2164-2166)AAG>GAG	p.K722E	EXPH5_uc010rvy.1_Missense_Mutation_p.K534E|EXPH5_uc010rvz.1_Missense_Mutation_p.K566E|EXPH5_uc010rwa.1_Missense_Mutation_p.K646E	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	722					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TCACCTGCCTTGTTTGTCTGG	0.418													13	39					0	0	1	0	0
EXPH5	23086	broad.mit.edu	37	11	108384777	108384777	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:108384777C>T	uc001pkk.2	-	6	1568	c.1457G>A	c.(1456-1458)GGA>GAA	p.G486E	EXPH5_uc010rvy.1_Missense_Mutation_p.G298E|EXPH5_uc010rvz.1_Missense_Mutation_p.G330E|EXPH5_uc010rwa.1_Missense_Mutation_p.G410E	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	486					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GAAAGAATGTCCTTTCTCTTG	0.423													25	64					0	0	1	0	0
ZC3H12C	85463	broad.mit.edu	37	11	110035850	110035850	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:110035850C>T	uc009yxw.2	+	6	2091	c.2040C>T	c.(2038-2040)TTC>TTT	p.F680F	ZC3H12C_uc010rwc.1_Silent_p.F681F|ZC3H12C_uc010rwd.1_Silent_p.F681F|ZC3H12C_uc001pkr.3_Silent_p.F649F	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	680							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		TGCAGAATTTCCACGACCCCT	0.547													56	188					0	0	1	0	0
ZC3H12C	85463	broad.mit.edu	37	11	110035986	110035987	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:110035986_110035987CC>TT	uc009yxw.2	+	6	2227_2228	c.2176_2177CC>TT	c.(2176-2178)CCC>TTC	p.P726F	ZC3H12C_uc010rwc.1_Missense_Mutation_p.P727F|ZC3H12C_uc010rwd.1_Missense_Mutation_p.P727F|ZC3H12C_uc001pkr.3_Missense_Mutation_p.P695F	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	726							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		TGGCGACTACCCCTCTCCTCCA	0.584													46	108					0	0	1	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110451632	110451633	+	Missense_Mutation	DNP	TG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:110451632_110451633TG>AA	uc001pkz.1	-	16	2322_2323	c.2037_2038CA>TT	c.(2035-2040)GCCATG>GCTTTG	p.M680L	ARHGAP20_uc001pky.1_Missense_Mutation_p.M657L|ARHGAP20_uc009yyb.1_Missense_Mutation_p.M644L|ARHGAP20_uc001pla.1_Missense_Mutation_p.M644L|ARHGAP20_uc001plb.2_Missense_Mutation_p.M223L	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	680					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		GGTGTGCACATGGCAGATGGGG	0.53													16	37					0	0	1	0	0
POU2AF1	5450	broad.mit.edu	37	11	111228391	111228391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:111228391C>T	uc001plg.3	-	4	490	c.235G>A	c.(235-237)GAG>AAG	p.E79K		NM_006235	NP_006226	Q16633	OBF1_HUMAN	POU class 2 associating factor 1	79					humoral immune response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			kidney(1)	1		all_cancers(61;1.36e-12)|all_epithelial(67;1.87e-07)|Melanoma(852;1.46e-05)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|all_neural(223;0.0146)|Medulloblastoma(222;0.0245)|Breast(348;0.0389)		Epithelial(105;1.01e-06)|BRCA - Breast invasive adenocarcinoma(274;3.12e-06)|all cancers(92;1.8e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0364)		GCAGCCTCCTCTGTCACTGCA	0.612			T	BCL6	NHL								6	18					0	0	1	0	0
BTG4	54766	broad.mit.edu	37	11	111368763	111368763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:111368763C>T	uc001plj.2	-	3	456	c.271G>A	c.(271-273)GAG>AAG	p.E91K	BTG4_uc001plk.2_Missense_Mutation_p.E91K	NM_017589	NP_060059	Q9NY30	BTG4_HUMAN	B-cell translocation gene 4	91					cell cycle arrest|negative regulation of cell proliferation|neuron differentiation						0		all_cancers(61;3.78e-13)|all_epithelial(67;5.29e-08)|Melanoma(852;3.15e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0204)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;1.22e-06)|BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|all cancers(92;2.18e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0509)		ATGGTCATCTCCTTCGGAAGT	0.403													17	47					0	0	1	0	0
SIK2	23235	broad.mit.edu	37	11	111571730	111571730	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:111571730T>C	uc001plt.2	+	5	717	c.599T>C	c.(598-600)ATC>ACC	p.I200T		NM_015191	NP_056006	Q9H0K1	SIK2_HUMAN	SNF1-like kinase 2	200	Protein kinase.				intracellular protein kinase cascade|regulation of insulin receptor signaling pathway	Golgi apparatus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|skin(1)	3						CAGCTGGACATCTGGGTACTG	0.468													17	32					0	0	1	0	0
ZW10	9183	broad.mit.edu	37	11	113607479	113607479	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:113607479G>A	uc001poe.2	-	15	2119	c.2082C>T	c.(2080-2082)CCC>CCT	p.P694P	ZW10_uc009yyv.2_RNA	NM_004724	NP_004715	O43264	ZW10_HUMAN	centromere/kinetochore protein zw10	694					cell division|ER to Golgi vesicle-mediated transport|establishment of mitotic spindle orientation|meiosis|mitotic cell cycle checkpoint|mitotic metaphase plate congression|mitotic prometaphase|protein complex assembly|protein localization to kinetochore|protein transport|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|endoplasmic reticulum membrane|kinetochore microtubule|nucleus|spindle pole	centromeric DNA binding|protein binding			central_nervous_system(1)|skin(1)	2		all_cancers(61;3.84e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000237)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.94e-06)|Epithelial(105;0.000103)|all cancers(92;0.000786)		CAAATACTTGGGGTCCTTCAT	0.378													33	100					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117304180	117304180	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:117304180C>T	uc001prh.1	-	28	5066	c.5064G>A	c.(5062-5064)AAG>AAA	p.K1688K		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1628	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CTGCCAAACTCTTTGCATCTG	0.512													4	29					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117352743	117352743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:117352743C>T	uc001prh.1	-	12	2676	c.2674G>A	c.(2674-2676)GAC>AAC	p.D892N		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	832	Extracellular (Potential).|Ig-like C2-type 9.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		ATGACGCGGTCAGGGTCGATG	0.632													15	66					0	0	1	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117784497	117784497	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:117784497G>A	uc001prs.1	-	5	897	c.804C>T	c.(802-804)TTC>TTT	p.F268F	TMPRSS13_uc009yzr.1_5'UTR|TMPRSS13_uc001prt.1_5'UTR|TMPRSS13_uc001pru.1_Silent_p.F268F	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	263	Extracellular (Potential).|SRCR.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		GTTACCTCTCGAAACCCAGCT	0.502													20	62					0	0	1	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117789465	117789465	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:117789465G>C	uc001prs.1	-	2	203	c.110C>G	c.(109-111)GCC>GGC	p.A37G	TMPRSS13_uc009yzr.1_5'UTR|TMPRSS13_uc001prt.1_5'UTR|TMPRSS13_uc001pru.1_Missense_Mutation_p.A37G	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	37	1-4.|4 X 5 AA repeats of T-P-P-G-R.|12 X 5 AA repeats of A-S-P-A-[GLQR].|Cytoplasmic (Potential).|Ala-rich.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		AGATGCCTGGGCTGGAGATGC	0.632													3	94					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118373290	118373290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:118373290C>T	uc001pta.2	+	27	6697	c.6674C>T	c.(6673-6675)TCC>TTC	p.S2225F	MLL_uc001ptb.2_Missense_Mutation_p.S2228F	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2225					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AATAATGTTTCCTCAGTCTCC	0.468			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								22	24					0	0	1	0	0
PHLDB1	23187	broad.mit.edu	37	11	118498462	118498463	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:118498462_118498463CC>TT	uc001ptr.1	+	7	1276_1277	c.923_924CC>TT	c.(922-924)TCC>TTT	p.S308F	PHLDB1_uc010ryh.1_Missense_Mutation_p.S307F|PHLDB1_uc001pts.2_Missense_Mutation_p.S308F|PHLDB1_uc001ptt.2_Missense_Mutation_p.S308F|PHLDB1_uc001ptu.1_RNA|PHLDB1_uc001ptv.1_Missense_Mutation_p.S108F|PHLDB1_uc001ptw.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	308											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GGTGCTCGCTCCGAGAGTCCTC	0.668													16	41					0	0	1	0	0
BCL9L	283149	broad.mit.edu	37	11	118769512	118769512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:118769512G>A	uc001pug.2	-	8	5077	c.4112C>T	c.(4111-4113)CCC>CTC	p.P1371L	BCL9L_uc009zal.2_Missense_Mutation_p.P1366L	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1371	Pro-rich.				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		AGGCCGAGAGGGAGTCTGCTC	0.627													13	25					0	0	1	0	0
HYOU1	10525	broad.mit.edu	37	11	118925984	118925984	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:118925984G>C	uc001puu.2	-	5	525	c.332C>G	c.(331-333)CCC>CGC	p.P111R	HYOU1_uc001put.2_Missense_Mutation_p.P76R|HYOU1_uc010ryu.1_Missense_Mutation_p.P131R|HYOU1_uc010ryv.1_Intron|HYOU1_uc001pux.3_Missense_Mutation_p.P111R|HYOU1_uc010ryw.1_RNA|HYOU1_uc001puw.1_Missense_Mutation_p.P111R	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	111						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		AGCTACATGGGGGTTATCTGC	0.542													42	106					0	0	1	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120348212	120348212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:120348212C>T	uc001pxl.1	+	36	3516	c.3509C>T	c.(3508-3510)TCA>TTA	p.S1170L	ARHGEF12_uc009zat.2_Missense_Mutation_p.S1151L|ARHGEF12_uc010rzn.1_Missense_Mutation_p.S1067L|ARHGEF12_uc009zau.1_Missense_Mutation_p.S1067L	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	1170					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		CATGGCATTTCAGTCACTGGT	0.323			T	MLL	AML								16	37					0	0	1	0	0
TBCEL	219899	broad.mit.edu	37	11	120924358	120924358	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:120924358C>T	uc009zay.2	+	4	450	c.372C>T	c.(370-372)TCC>TCT	p.S124S	TBCEL_uc001pxo.2_Silent_p.S124S|TBCEL_uc001pxp.2_5'UTR|TBCEL_uc001pxq.2_Intron	NM_001130047	NP_001123519	Q5QJ74	TBCEL_HUMAN	tubulin folding cofactor E-like	124	LRR 3.					cytoplasm|cytoskeleton				skin(1)	1		Breast(109;0.00526)|Medulloblastoma(222;0.0523)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;5.89e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.121)		GTGCTGGGTCCTTCTCTGGGG	0.453													23	48					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	121000613	121000613	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:121000613G>A	uc010rzo.1	+	9	2634	c.2634G>A	c.(2632-2634)TGG>TGA	p.W878*		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	878	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TGGAAAGCTGGACAACTTTCG	0.562													18	70					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121428058	121428058	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:121428058C>T	uc001pxx.2	+	19	2687	c.2607C>T	c.(2605-2607)ATC>ATT	p.I869I		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	869	Extracellular (Potential).|LDL-receptor class B 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GACTCACAATCGTCAATTCCT	0.522													31	109					0	0	1	0	0
UBASH3B	84959	broad.mit.edu	37	11	122646962	122646962	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:122646962T>C	uc001pyi.3	+	2	557	c.197T>C	c.(196-198)GTT>GCT	p.V66A		NM_032873	NP_116262	Q8TF42	UBS3B_HUMAN	ubiquitin associated and SH3 domain containing,	66	UBA.					cytoplasm|nucleus	protein tyrosine phosphatase activity			central_nervous_system(1)	1		Breast(109;0.00254)|Medulloblastoma(222;0.00877)|Lung NSC(97;0.0183)|all_lung(97;0.0186)|all_neural(223;0.0381)|all_hematologic(192;0.104)		BRCA - Breast invasive adenocarcinoma(274;1.37e-05)|OV - Ovarian serous cystadenocarcinoma(99;0.0463)		GGAAGAAGTGTTCAGGCAGCA	0.403													12	38					0	0	1	0	0
LOC341056	341056	broad.mit.edu	37	11	122889339	122889339	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:122889339G>A	uc010rzt.1	+	1		c.1066G>A				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						GCATGAAGGGGAATGGGATTC	0.552													10	32					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123814182	123814182	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:123814182G>A	uc010sab.1	-	1	364	c.364C>T	c.(364-366)CGT>TGT	p.R122C		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GCCAGGTAACGATCCAGAGAC	0.527													9	21					0	0	1	0	0
OR6T1	219874	broad.mit.edu	37	11	123814471	123814471	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:123814471G>A	uc010sab.1	-	1	75	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GGAACACCAGGAACTGTATGA	0.488													10	67					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123886642	123886642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:123886642C>T	uc010sac.1	+	1	361	c.361C>T	c.(361-363)CGC>TGC	p.R121C		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GTCCTATGATCGCTACTTGGC	0.572													4	151					0	0	1	0	0
OR10G4	390264	broad.mit.edu	37	11	123886691	123886691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:123886691G>A	uc010sac.1	+	1	410	c.410G>A	c.(409-411)GGG>GAG	p.G137E		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		ATGATGAGTGGGAGCAGGTGT	0.562													13	249					0	0	1	0	0
OR10G9	219870	broad.mit.edu	37	11	123894208	123894208	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:123894208C>T	uc010sad.1	+	1	489	c.489C>T	c.(487-489)TTC>TTT	p.F163F		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		TATTGACTTTCCATTTGCCCT	0.557													81	177					0	0	1	0	0
OR10G9	219870	broad.mit.edu	37	11	123894476	123894476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:123894476C>T	uc010sad.1	+	1	757	c.757C>T	c.(757-759)CCC>TCC	p.P253S		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CTTTTTTGTTCCCTGTGTTTT	0.537													23	64					0	0	1	0	0
OR8G2	26492	broad.mit.edu	37	11	124095962	124095962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:124095962C>T	uc010saf.1	+	1	565	c.565C>T	c.(565-567)CAT>TAT	p.H189Y		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	189						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TGTGATTAACCATTATTTTTG	0.428													55	149					0	0	1	0	0
TMEM218	219854	broad.mit.edu	37	11	124967576	124967577	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:124967576_124967577GG>AA	uc001qbs.2	-	4	925_926	c.273_274CC>TT	c.(271-276)TTCCTT>TTTTTT	p.L92F	TMEM218_uc001qbr.2_Missense_Mutation_p.L118F|TMEM218_uc010saw.1_Missense_Mutation_p.L127F|TMEM218_uc010sax.1_Missense_Mutation_p.L92F|TMEM218_uc001qbt.2_Missense_Mutation_p.L127F|TMEM218_uc010say.1_RNA	NM_001080546	NP_001074015	A2RU14	TM218_HUMAN	transmembrane protein 218	92	Helical; (Potential).					integral to membrane					0						AGGCCTCCAAGGAAGATGGCAC	0.436													9	17					0	0	1	0	0
STT3A	3703	broad.mit.edu	37	11	125478120	125478120	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:125478120C>T	uc001qcd.2	+	9	1007	c.897C>T	c.(895-897)TTC>TTT	p.F299F	STT3A_uc009zbm.2_Silent_p.F299F|STT3A_uc001qce.2_Silent_p.F299F|STT3A_uc010sbg.1_Silent_p.F207F|STT3A_uc009zbn.2_Silent_p.F73F	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	299	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		AAGTTCTTTTCCGGAGCGTCA	0.478													26	39					0	0	1	0	0
RPUSD4	84881	broad.mit.edu	37	11	126080839	126080839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:126080839G>A	uc001qde.2	-	2	355	c.301C>T	c.(301-303)CAC>TAC	p.H101Y	FAM118B_uc001qdf.2_5'Flank|FAM118B_uc009zca.2_5'Flank|FAM118B_uc001qdg.2_5'Flank|RPUSD4_uc009zbz.2_Missense_Mutation_p.H101Y|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	101					pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		TTGTCCTGGTGGAGAATTCCT	0.567													41	89					0	0	1	0	0
RPUSD4	84881	broad.mit.edu	37	11	126081383	126081384	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:126081383_126081384GG>AA	uc001qde.2	-	1	204_205	c.150_151CC>TT	c.(148-153)CTCCGA>CTTTGA	p.R51*	FAM118B_uc001qdf.2_5'Flank|FAM118B_uc009zca.2_5'Flank|FAM118B_uc001qdg.2_5'Flank|RPUSD4_uc009zbz.2_Nonsense_Mutation_p.R51*|RPUSD4_uc009zby.2_RNA	NM_032795	NP_116184	Q96CM3	RUSD4_HUMAN	RNA pseudouridylate synthase domain containing 4	51	Potential.				pseudouridine synthesis		protein binding|pseudouridine synthase activity|RNA binding			breast(1)	1	all_hematologic(175;0.145)	Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0761)		TTCTGGGCTCGGAGCTTCTCCG	0.569													50	156					0	0	1	0	0
KIRREL3	84623	broad.mit.edu	37	11	126299111	126299111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:126299111C>T	uc001qea.2	-	15	2130	c.1769G>A	c.(1768-1770)CGG>CAG	p.R590Q	KIRREL3_uc001qeb.2_Missense_Mutation_p.R578Q|ST3GAL4_uc001qdx.1_Intron	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	590	Cytoplasmic (Potential).				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		CTCACCCTCCCGACCAGAGGC	0.493													10	23					0	0	1	0	0
KIRREL3	84623	broad.mit.edu	37	11	126306834	126306834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:126306834G>A	uc001qea.2	-	12	1785	c.1424C>T	c.(1423-1425)ACC>ATC	p.T475I	KIRREL3_uc001qeb.2_Missense_Mutation_p.T475I|KIRREL3_uc001qec.1_Missense_Mutation_p.T475I|ST3GAL4_uc001qdx.1_Intron	NM_032531	NP_115920	Q8IZU9	KIRR3_HUMAN	kin of IRRE like 3 isoform 1	475	Extracellular (Potential).|Ig-like C2-type 5.				hemopoiesis	extracellular region|integral to membrane|plasma membrane	protein binding			ovary(3)	3	all_hematologic(175;0.145)	Lung NSC(97;0.0484)|all_lung(97;0.0522)|Medulloblastoma(222;0.0523)|Breast(109;0.0949)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;6.03e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.12)		GCCCTCCTCGGTGCTGATGGT	0.632													7	14					0	0	1	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128844600	128844600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:128844600G>A	uc009zcp.2	-	20	2450	c.2450C>T	c.(2449-2451)TCC>TTC	p.S817F	ARHGAP32_uc009zcq.1_Missense_Mutation_p.S777F|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.S468F	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	817					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						ATCTAAAAAGGAAGCACCACT	0.458													17	59					0	0	1	0	0
BARX2	8538	broad.mit.edu	37	11	129306903	129306903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:129306903G>A	uc001qfc.3	+	2	495	c.445G>A	c.(445-447)GAG>AAG	p.E149K		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	149	Homeobox.										0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		CATGGGCCTGGAGAAGAAATT	0.607													9	12					0	0	1	0	0
ZBTB44	29068	broad.mit.edu	37	11	130131663	130131663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:130131663G>A	uc001qga.2	-	2	500	c.106C>T	c.(106-108)CGT>TGT	p.R36C	ZBTB44_uc001qgb.3_Missense_Mutation_p.R36C|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qgc.1_Missense_Mutation_p.R36C|ZBTB44_uc001qfz.2_Missense_Mutation_p.R36C	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	36	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		TCCTGGACACGAATAGTGATA	0.438													37	100					0	0	1	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130289092	130289092	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:130289092G>A	uc001qgg.3	-	2	1174	c.816C>T	c.(814-816)ATC>ATT	p.I272I		NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	272	Peptidase M12B.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		CATCTTCTACGATCAGCACTT	0.527													42	124					0	0	1	0	0
SNX19	399979	broad.mit.edu	37	11	130785374	130785374	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:130785374A>G	uc001qgk.3	-	1	1009	c.461T>C	c.(460-462)GTT>GCT	p.V154A	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_Intron|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Missense_Mutation_p.V154A|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	154	PXA.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		ACTCTGGGCAACAGCATGACT	0.557													21	34					0	0	1	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790737	133790737	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:133790737G>A	uc001qgx.3	-	18	3114	c.2883C>T	c.(2881-2883)TTC>TTT	p.F961F		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	961	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		GGCCATGGTGGAAGGGCCGGG	0.721													5	19					0	0	1	0	0
SLC6A13	6540	broad.mit.edu	37	12	336799	336799	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:336799G>A	uc001qic.1	-	8	920	c.867C>T	c.(865-867)TCC>TCT	p.S289S	SLC6A13_uc009zdj.1_Silent_p.S289S|SLC6A13_uc010sdl.1_Silent_p.S197S|SLC6A13_uc010sdm.1_Silent_p.S170S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	289	Helical; Name=6; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			AGATGGCGAAGGAGAAGAATA	0.572													24	54					0	0	1	0	0
KDM5A	5927	broad.mit.edu	37	12	463297	463297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:463297G>A	uc001qif.1	-	8	1337	c.974C>T	c.(973-975)CCT>CTT	p.P325L	KDM5A_uc001qie.1_Missense_Mutation_p.P325L|KDM5A_uc010sdn.1_Missense_Mutation_p.P284L|KDM5A_uc010sdo.1_Intron	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	325	PHD-type 1.				chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						AGGTAGTGGAGGAATTAGACA	0.393			T 	NUP98	AML								44	89					0	0	1	0	0
B4GALNT3	283358	broad.mit.edu	37	12	653569	653569	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:653569G>A	uc001qii.1	+	4	416	c.416G>A	c.(415-417)AGG>AAG	p.R139K	B4GALNT3_uc001qij.1_Missense_Mutation_p.R41K	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	139	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			CAGCAGCTCAGGAGGAACCTG	0.612													76	140					0	0	1	0	0
WNK1	65125	broad.mit.edu	37	12	995046	995046	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:995046C>T	uc001qio.3	+	19	5583	c.5076C>T	c.(5074-5076)ATC>ATT	p.I1692I	WNK1_uc001qip.3_Silent_p.I1445I|WNK1_uc001qir.3_Silent_p.I865I	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1692					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CACCAGGCATCCCAACTACTG	0.493													56	117					0	0	1	0	0
LRTM2	654429	broad.mit.edu	37	12	1943807	1943807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:1943807G>A	uc001qjt.2	+	5	1839	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.E345K|LRTM2_uc010sdx.1_Missense_Mutation_p.E345K|LRTM2_uc001qjv.2_Missense_Mutation_p.E107K	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	345	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GTACCACCGGGAGCTCAAAAA	0.647													25	56					0	0	1	0	0
CACNA1C	775	broad.mit.edu	37	12	2694603	2694603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:2694603G>A	uc009zdu.1	+	17	2714	c.2401G>A	c.(2401-2403)GAG>AAG	p.E801K	CACNA1C_uc009zdv.1_Missense_Mutation_p.E798K|CACNA1C_uc001qkb.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkc.2_Missense_Mutation_p.E801K|CACNA1C_uc001qke.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkf.2_Missense_Mutation_p.E801K|CACNA1C_uc001qjz.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkd.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkg.2_Missense_Mutation_p.E801K|CACNA1C_uc009zdw.1_Missense_Mutation_p.E801K|CACNA1C_uc001qkh.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkl.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkn.2_Missense_Mutation_p.E801K|CACNA1C_uc001qko.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkp.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkr.2_Missense_Mutation_p.E801K|CACNA1C_uc001qku.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkq.2_Missense_Mutation_p.E801K|CACNA1C_uc001qks.2_Missense_Mutation_p.E801K|CACNA1C_uc001qkt.2_Missense_Mutation_p.E801K|CACNA1C_uc001qka.1_Missense_Mutation_p.E336K|CACNA1C_uc001qki.1_Missense_Mutation_p.E537K|CACNA1C_uc001qkj.1_Missense_Mutation_p.E537K|CACNA1C_uc001qkk.1_Missense_Mutation_p.E537K|CACNA1C_uc001qkm.1_Missense_Mutation_p.E537K|CACNA1C_uc001qkw.2_Missense_Mutation_p.E90K	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	801	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GGAATCCAAGGAGGAGAAGAT	0.552													5	13					0	0	1	0	0
FKBP4	2288	broad.mit.edu	37	12	2910422	2910423	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:2910422_2910423CC>TT	uc001qkz.2	+	9	1370_1371	c.1172_1173CC>TT	c.(1171-1173)ACC>ATT	p.T391I		NM_002014	NP_002005	Q02790	FKBP4_HUMAN	FK506 binding protein 52	391	Interaction with tubulin (By similarity).				negative regulation of microtubule polymerization or depolymerization|negative regulation of neuron projection development|protein folding	axonal growth cone|cytosol|membrane|microtubule|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity|protein binding, bridging				0			OV - Ovarian serous cystadenocarcinoma(31;0.00105)		Dimethyl sulfoxide(DB01093)	GCCGCCAAGACCCAGCTGGCTG	0.594													44	104					0	0	1	0	0
ITFG2	55846	broad.mit.edu	37	12	2933032	2933032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:2933032G>A	uc001qlb.1	+	11	1227	c.1163G>A	c.(1162-1164)CGG>CAG	p.R388Q	ITFG2_uc010seb.1_Missense_Mutation_p.R211Q|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	388											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			CAGCTGGAGCGGATGGAGTCT	0.582													74	109					0	0	1	0	0
NRIP2	83714	broad.mit.edu	37	12	2937127	2937127	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:2937127C>T	uc001qlc.2	-	4	737	c.665G>A	c.(664-666)GGG>GAG	p.G222E	ITFG2_uc010sec.1_Intron|NRIP2_uc010sed.1_Missense_Mutation_p.G222E	NM_031474	NP_113662	Q9BQI9	NRIP2_HUMAN	nuclear receptor interacting protein 2	222					proteolysis|transcription, DNA-dependent	cytoplasm|nucleus	aspartic-type endopeptidase activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			AGTCTCCTGCCCCAGCTGTAG	0.612													31	53					0	0	1	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3806092	3806092	+	Missense_Mutation	SNP	C	T	T	rs143641818		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:3806092C>T	uc001qmj.2	-	4	646	c.74G>A	c.(73-75)GGG>GAG	p.G25E	EFCAB4B_uc010sen.1_Missense_Mutation_p.G25E|EFCAB4B_uc010seo.1_Missense_Mutation_p.G25E	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	25					activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			GGCTCCACTCCCCTTTGGCCC	0.602													18	30					0	0	1	0	0
PARP11	57097	broad.mit.edu	37	12	3939121	3939121	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:3939121C>G	uc001qmk.1	-	1	116	c.61G>C	c.(61-63)GAC>CAC	p.D21H	PARP11_uc001qml.2_Missense_Mutation_p.D28H|PARP11_uc009zef.2_RNA|PARP11_uc001qmm.2_5'UTR|PARP11_uc001qmn.2_5'UTR	NM_020367	NP_065100	Q9NR21	PAR11_HUMAN	poly (ADP-ribose) polymerase family, member 11	21	WWE.						NAD+ ADP-ribosyltransferase activity			ovary(1)|central_nervous_system(1)	2			all cancers(3;1.58e-07)|OV - Ovarian serous cystadenocarcinoma(31;0.00287)|GBM - Glioblastoma multiforme(3;0.0141)|COAD - Colon adenocarcinoma(12;0.0264)			TCTGACGTGTCCATGTCATCC	0.408													33	53					0	0	1	0	0
FGF6	2251	broad.mit.edu	37	12	4543548	4543548	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:4543548G>A	uc001qmr.1	-	3	504	c.460C>T	c.(460-462)CAA>TAA	p.Q154*		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	154					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			CATTCTTCTTGGAAGCTGGGC	0.532													53	141					0	0	1	0	0
FGF6	2251	broad.mit.edu	37	12	4554710	4554710	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:4554710G>A	uc001qmr.1	-	1	71	c.27C>T	c.(25-27)ATC>ATT	p.I9I		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	9					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			GGGACATAGTGATGAACAGTT	0.587													19	23					0	0	1	0	0
AKAP3	10566	broad.mit.edu	37	12	4737609	4737609	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:4737609T>A	uc001qnb.3	-	4	688	c.459A>T	c.(457-459)AAA>AAT	p.K153N		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	153					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GATAGACACATTTGTTTTCAG	0.453													75	127					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4920518	4920518	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:4920518C>T	uc001qng.2	+	1	2177	c.1311C>T	c.(1309-1311)ATC>ATT	p.I437I		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	437	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GGGGAAAGATCGTGGGCTCGC	0.592										HNSCC(72;0.22)			40	82					0	0	1	0	0
KCNA5	3741	broad.mit.edu	37	12	5154291	5154291	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:5154291C>T	uc001qni.2	+	1	1207	c.978C>T	c.(976-978)ATC>ATT	p.I326I		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	326	Helical; Name=Segment S2; (Potential).					Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						CCTTCTTCATCGTGGAGACCA	0.672													50	117					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6076679	6076679	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:6076679C>T	uc001qnn.1	-	47	8110	c.7860G>A	c.(7858-7860)AGG>AGA	p.R2620R	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2620	VWFC 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AGGTGGTCTTCCTGCACTCCA	0.622													80	139					0	0	1	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6426818	6426818	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:6426818A>T	uc001qnr.2	+	9	1121	c.973A>T	c.(973-975)AAG>TAG	p.K325*	PLEKHG6_uc001qns.2_Nonsense_Mutation_p.K325*|PLEKHG6_uc010sew.1_Nonsense_Mutation_p.K325*|PLEKHG6_uc010sex.1_Nonsense_Mutation_p.K293*	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	325	DH.				regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						TGCTGTGCTCAAGAGGAGCCC	0.617													22	38					0	0	1	0	0
CD27	939	broad.mit.edu	37	12	6559706	6559706	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:6559706G>A	uc001qod.2	+	4	660	c.449_splice	c.e4-1	p.E150_splice	LOC678655_uc001qob.2_Intron|LOC678655_uc001qoc.2_RNA|LOC678655_uc009zel.1_RNA|CD27_uc001qoe.2_Splice_Site|LOC678655_uc009zem.1_RNA|LOC678655_uc001qof.2_Intron|TAPBPL_uc001qog.3_5'Flank|TAPBPL_uc001qoh.3_5'Flank|TAPBPL_uc001qoi.1_5'Flank	NM_001242	NP_001233	P26842	CD27_HUMAN	tumor necrosis factor receptor superfamily,						anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway|immunoglobulin mediated immune response|induction of apoptosis|positive regulation of B cell differentiation|positive regulation of JNK cascade|release of cytoplasmic sequestered NF-kappaB	extracellular region|integral to plasma membrane	caspase inhibitor activity|protein binding|transmembrane receptor activity				0						TGTTTTTCCAGAGATGCTGGA	0.582													52	85					0	0	1	0	0
NOP2	4839	broad.mit.edu	37	12	6669313	6669313	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:6669313G>A	uc001qph.1	-	15	1908	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	NOP2_uc009zeq.1_Silent_p.F292F|NOP2_uc001qpi.1_Silent_p.F576F|NOP2_uc001qpj.1_Silent_p.F5F	NM_001033714	NP_001028886	P46087	NOP2_HUMAN	nucleolar protein 1, 120kDa	580					positive regulation of cell proliferation|rRNA processing	nucleolus	protein binding|RNA binding|S-adenosylmethionine-dependent methyltransferase activity			ovary(2)	2						ACTTGGCAATGAAGAACCCAT	0.478													23	46					0	0	1	0	0
LAG3	3902	broad.mit.edu	37	12	6882409	6882409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:6882409G>A	uc001qqt.3	+	2	459	c.110G>A	c.(109-111)GGG>GAG	p.G37E	LAG3_uc001qqs.2_Missense_Mutation_p.G37E|LAG3_uc001qqu.2_5'UTR	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	37	Ig-like V-type.|Extracellular (Potential).					integral to membrane	antigen binding|MHC class II protein binding				0						GCCCAGGAGGGGGCTCCTGCC	0.657													27	52					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7556215	7556215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:7556215C>T	uc001qsy.2	-	6	1350	c.1324G>A	c.(1324-1326)GAG>AAG	p.E442K	CD163L1_uc010sge.1_Missense_Mutation_p.E452K	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	442	SRCR 4.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGAGCTGACTCATTCCCAGTG	0.453													33	82					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7559343	7559343	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:7559343C>T	uc001qsy.2	-	5	898	c.872G>A	c.(871-873)TGG>TAG	p.W291*	CD163L1_uc010sge.1_Nonsense_Mutation_p.W301*	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	291	SRCR 3.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGCATTGTTCCACTTATGGTG	0.502													57	115					0	0	1	0	0
CD163L1	283316	broad.mit.edu	37	12	7586146	7586146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:7586146C>T	uc001qsy.2	-	3	295	c.269G>A	c.(268-270)GGA>GAA	p.G90E	CD163L1_uc010sge.1_Missense_Mutation_p.G90E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	90	SRCR 1.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AAATGGACATCCAAGCTGTTT	0.473													63	92					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7633791	7633791	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:7633791C>T	uc001qsz.3	-	15	3437	c.3309G>A	c.(3307-3309)CTG>CTA	p.L1103L	CD163_uc001qta.3_Silent_p.L1103L|CD163_uc009zfw.2_Silent_p.L1136L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1103	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CATCTGCATTCAGGCAAGAAT	0.473													56	86					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7635321	7635321	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:7635321C>T	uc001qsz.3	-	14	3293	c.3165G>A	c.(3163-3165)GGG>GGA	p.G1055G	CD163_uc001qta.3_Silent_p.G1055G|CD163_uc009zfw.2_Silent_p.G1088G	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1055	Helical; (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						CCCCAAGGATCCCGACTGCAA	0.428													41	75					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7649413	7649413	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:7649413A>G	uc001qsz.3	-	5	1223	c.1095T>C	c.(1093-1095)TGT>TGC	p.C365C	CD163_uc001qta.3_Silent_p.C365C|CD163_uc009zfw.2_Silent_p.C365C	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	365	SRCR 3.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						ACTTACCAGAACATGTCACGC	0.348													25	53					0	0	1	0	0
CLEC4C	170482	broad.mit.edu	37	12	7890163	7890163	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:7890163G>A	uc001qtg.1	-	4	417	c.243C>T	c.(241-243)AGC>AGT	p.S81S	CLEC4C_uc001qth.1_Silent_p.S81S|CLEC4C_uc001qti.1_Silent_p.S50S	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	81	Extracellular (Potential).				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		TTGGGCAGCAGCTCCAATCTT	0.368													32	54					0	0	1	0	0
CLEC4D	338339	broad.mit.edu	37	12	8672856	8672856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:8672856C>T	uc001qun.2	+	5	612	c.419C>T	c.(418-420)TCC>TTC	p.S140F		NM_080387	NP_525126	Q8WXI8	CLC4D_HUMAN	C-type lectin domain family 4, member D	140	C-type lectin.|Extracellular (Potential).				innate immune response	integral to membrane	sugar binding				0	Lung SC(5;0.184)					AGACGGCTTTCCTATTTCCTT	0.403													32	67					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	9000193	9000193	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:9000193G>C	uc001quz.3	+	15	1830	c.1732G>C	c.(1732-1734)GAG>CAG	p.E578Q	A2ML1_uc001qva.1_Missense_Mutation_p.E158Q|A2ML1_uc010sgm.1_Missense_Mutation_p.E78Q	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	422						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						AGCAGAAGTGGAGCTGCAGCT	0.602													74	145					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	9000234	9000234	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:9000234C>T	uc001quz.3	+	15	1871	c.1773C>T	c.(1771-1773)CTC>CTT	p.L591L	A2ML1_uc001qva.1_Silent_p.L171L|A2ML1_uc010sgm.1_Silent_p.L91L	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	435						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TGTGTGCGCTCCGGGCGGTGG	0.612													80	133					0	0	1	0	0
PHC1	1911	broad.mit.edu	37	12	9074344	9074344	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:9074344C>G	uc001qvd.2	+	5	610	c.454C>G	c.(454-456)CGG>GGG	p.R152G	PHC1_uc001qvc.1_Missense_Mutation_p.R115G|PHC1_uc010sgn.1_Missense_Mutation_p.R152G|PHC1_uc001qve.2_Missense_Mutation_p.R152G	NM_004426	NP_004417	P78364	PHC1_HUMAN	polyhomeotic 1-like	152					multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|breast(1)	2						GATGTATCTACGGGTAAGCCA	0.488													48	89					0	0	1	0	0
TAS2R10	50839	broad.mit.edu	37	12	10978133	10978133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:10978133C>T	uc001qyy.1	-	1	736	c.736G>A	c.(736-738)GAA>AAA	p.E246K		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	246	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						CATGATATTTCTATGGCCATG	0.378													35	70					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11420522	11420522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:11420522G>A	uc001qzs.2	-	3	699	c.661C>T	c.(661-663)CGT>TGT	p.R221C	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	221	9.|10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|Pro-rich.					extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			TTTCCCGGACGAGGTGGGGGA	0.627													14	278					0	0	1	0	0
PRB3	5544	broad.mit.edu	37	12	11420585	11420585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:11420585G>A	uc001qzs.2	-	3	636	c.598C>T	c.(598-600)CGT>TGT	p.R200C	PRB4_uc001qzf.1_Intron	NM_006249	NP_006240	Q04118	PRB3_HUMAN	proline-rich protein BstNI subfamily 3	200	10 X 21 AA tandem repeats of [RH]-P-G-K- P-[EQ]-G-[PQS]-P-[PS]-Q-[GE]-G-N-[QK]- [SP]-[QR]-[GR]-P-P-P.|8.|Pro-rich.		Missing (in allele S).			extracellular region	Gram-negative bacterial cell surface binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(49;0.201)			TTTCCCGGACGAGGTGGGGGA	0.637													123	384					0	0	1	0	0
PRB2	653247	broad.mit.edu	37	12	11546170	11546170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:11546170C>T	uc010shk.1	-	3	877	c.842G>A	c.(841-843)GGA>GAA	p.G281E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGTGG	0.612													138	240					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716752	13716752	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:13716752C>T	uc001rbt.2	-	13	3599	c.3420G>A	c.(3418-3420)AAG>AAA	p.K1140K		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1140	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTGAGTTCTCCTTTGTTCGGA	0.607													23	53					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14794085	14794085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:14794085C>T	uc001rcd.2	-	18	2136	c.1999G>A	c.(1999-2001)GGG>AGG	p.G667R		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	667	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GCGATGATCCCATAGCTGTAC	0.483													41	61					0	0	1	0	0
RERGL	79785	broad.mit.edu	37	12	18242180	18242180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:18242180G>A	uc001rdq.2	-	2	232	c.38C>T	c.(37-39)TCT>TTT	p.S13F	RERGL_uc001rdr.2_Intron	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	13	Small GTPase-like.|GTP (By similarity).				signal transduction	membrane	GTP binding|GTPase activity				0						AACAGAAACAGATTTCTCATT	0.333													6	16					0	0	1	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891529	18891529	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:18891529C>T	uc001rdy.2	+	1	485	c.327C>T	c.(325-327)ATC>ATT	p.I109I	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	109					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GTCATGGTATCATTCAGAATG	0.388													29	50					0	0	1	0	0
PDE3A	5139	broad.mit.edu	37	12	20832975	20832975	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:20832975T>A	uc001reh.1	+	16	3218	c.3196T>A	c.(3196-3198)TTC>ATC	p.F1066I		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	1066	Catalytic (By similarity).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	AAAGAAGACTTTCAAAAGGAG	0.358													14	22					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20885978	20885978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:20885978C>T	uc001rej.3	+	11	1677	c.1322C>T	c.(1321-1323)TCC>TTC	p.S441F	SLCO1C1_uc010sii.1_Missense_Mutation_p.S441F|SLCO1C1_uc010sij.1_Missense_Mutation_p.S392F|SLCO1C1_uc009zip.2_Missense_Mutation_p.S275F|SLCO1C1_uc001rei.2_Missense_Mutation_p.S441F|SLCO1C1_uc010sik.1_Missense_Mutation_p.S323F	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	441	Helical; Name=9; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					CTATTTCTTTCCCTGTTTGCA	0.418													73	140					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21032498	21032498	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:21032498C>T	uc001rek.2	+	10	1390	c.1264C>T	c.(1264-1266)CAA>TAA	p.Q422*	SLCO1B3_uc001rel.2_Nonsense_Mutation_p.Q422*|SLCO1B3_uc010sil.1_Nonsense_Mutation_p.Q422*|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Nonsense_Mutation_p.Q247*	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	422	Helical; Name=9; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CTTCTTGTTTCAACTTCTATA	0.313													19	34					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036376	21036376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:21036376G>A	uc001rek.2	+	12	1648	c.1522G>A	c.(1522-1524)GAA>AAA	p.E508K	SLCO1B3_uc001rel.2_Missense_Mutation_p.E508K|SLCO1B3_uc010sil.1_Missense_Mutation_p.E508K|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Missense_Mutation_p.E333K	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	508	Extracellular (Potential).|Kazal-like.				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TAGTTGTGTGGAAGTAACTGG	0.318													30	47					0	0	1	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21036450	21036450	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:21036450G>A	uc001rek.2	+	12	1722	c.1596G>A	c.(1594-1596)AGG>AGA	p.R532R	SLCO1B3_uc001rel.2_Silent_p.R532R|SLCO1B3_uc010sil.1_Silent_p.R532R|LST-3TM12_uc010sim.1_Intron|SLCO1B3_uc001reo.2_Silent_p.R357R	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	532	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					CTTGTACAAGGAAATTTTTCA	0.373													18	57					0	0	1	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21325684	21325684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:21325684C>T	uc001req.3	+	3	289	c.185C>T	c.(184-186)TCC>TTC	p.S62F		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	62	Extracellular (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	TTTGAGATATCCTCTTCTCTT	0.313													10	25					0	0	1	0	0
SLCO1B1	10599	broad.mit.edu	37	12	21327511	21327511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:21327511G>A	uc001req.3	+	4	331	c.227G>A	c.(226-228)GGA>GAA	p.G76E		NM_006446	NP_006437	Q9Y6L6	SO1B1_HUMAN	solute carrier organic anion transporter family,	76	Helical; Name=2; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	bile acid transmembrane transporter activity|sodium-independent organic anion transmembrane transporter activity|thyroid hormone transmembrane transporter activity			ovary(3)|skin(3)|pancreas(1)|central_nervous_system(1)	8					Digoxin(DB00390)|Gemfibrozil(DB01241)|Pravastatin(DB00175)	CCCTTTCTAGGAAATTTGCTT	0.358													11	16					0	0	1	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21453304	21453304	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:21453304C>T	uc001rer.2	-	7	1139	c.888G>A	c.(886-888)AAG>AAA	p.K296K	SLCO1A2_uc001res.2_Silent_p.K296K|SLCO1A2_uc010siq.1_Silent_p.K164K|SLCO1A2_uc010sio.1_Silent_p.K164K|SLCO1A2_uc010sip.1_Silent_p.K164K|SLCO1A2_uc001ret.2_Silent_p.K294K|SLCO1A2_uc001reu.2_Silent_p.K276K	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	296	Cytoplasmic (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CATATTTTTCCTTCTTGACCT	0.294													6	23					0	0	1	0	0
ABCC9	10060	broad.mit.edu	37	12	22078907	22078907	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:22078907G>A	uc001rfi.1	-	3	395	c.375C>T	c.(373-375)ATC>ATT	p.I125I	ABCC9_uc001rfh.2_Silent_p.I125I|ABCC9_uc001rfj.1_Silent_p.I125I|ABCC9_uc001rfk.2_Silent_p.I125I|ABCC9_uc001rfl.1_Silent_p.I125I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	125	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TTGATGTTTCGATATTATGAT	0.383													25	47					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26714877	26714877	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:26714877G>A	uc001rhg.2	-	35	5056	c.4639C>T	c.(4639-4641)CGT>TGT	p.R1547C		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1547	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GCAATTCCACGATTTTTTGCT	0.323													12	38					0	0	1	0	0
BICD1	636	broad.mit.edu	37	12	32520652	32520652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:32520652C>T	uc001rku.2	+	9	2894	c.2813C>T	c.(2812-2814)GCC>GTC	p.A938V	BICD1_uc001rkv.2_3'UTR|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	938					anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			TCACAACTAGCCGGGAGGCAA	0.512													36	56					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32974436	32974436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:32974436C>T	uc001rlj.3	-	10	2114	c.1999G>A	c.(1999-2001)GAA>AAA	p.E667K	PKP2_uc001rlk.3_Missense_Mutation_p.E623K|PKP2_uc010skj.1_Missense_Mutation_p.E620K	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	667					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TTGCTCTTTTCCTCCGGCATC	0.478													30	71					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	32994000	32994000	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:32994000G>A	uc001rlj.3	-	7	1765	c.1650C>T	c.(1648-1650)CTC>CTT	p.L550L	PKP2_uc001rlk.3_Silent_p.L506L|PKP2_uc010skj.1_Silent_p.L506L	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	550					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGTCAAAATCGAGCAAACCAT	0.438													66	125					0	0	1	0	0
PKP2	5318	broad.mit.edu	37	12	33021996	33021996	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:33021996C>T	uc001rlj.3	-	4	1150	c.1035G>A	c.(1033-1035)GGG>GGA	p.G345G	PKP2_uc001rlk.3_Silent_p.G345G|PKP2_uc010skj.1_Silent_p.G345G	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	345	ARM 1.				cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGTCTGCATTCCTAGACAAAC	0.532													42	87					0	0	1	0	0
SYT10	341359	broad.mit.edu	37	12	33560283	33560283	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:33560283G>A	uc001rll.1	-	3	815	c.518C>T	c.(517-519)TCC>TTC	p.S173F	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	173	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TCTTCGGAAGGAACTGTGGCT	0.438													40	79					0	0	1	0	0
SYT10	341359	broad.mit.edu	37	12	33579150	33579150	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:33579150G>A	uc001rll.1	-	2	729	c.432C>T	c.(430-432)GTC>GTT	p.V144V	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	144	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					AAGCAGTTTGGACTTCTGCTG	0.368													90	143					0	0	1	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967546	41967546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:41967546G>A	uc010skn.1	+	10	2436	c.2368G>A	c.(2368-2370)GAA>AAA	p.E790K	PDZRN4_uc001rmq.3_Missense_Mutation_p.E731K|PDZRN4_uc009zjz.2_Missense_Mutation_p.E729K|PDZRN4_uc001rmr.2_Missense_Mutation_p.E616K	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	989							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				CAATATCATTGAACTGAGTCA	0.478													13	22					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43821191	43821191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:43821191C>T	uc010skx.1	-	27	4027	c.4027G>A	c.(4027-4029)GAT>AAT	p.D1343N	ADAMTS20_uc001rno.1_Missense_Mutation_p.D461N	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1343	TSP type-1 9.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GAGGCTGCATCGCAGTAACTA	0.473													29	44					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43825277	43825277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:43825277C>T	uc010skx.1	-	22	3119	c.3119G>A	c.(3118-3120)GGA>GAA	p.G1040E	ADAMTS20_uc001rno.1_Missense_Mutation_p.G194E|ADAMTS20_uc001rnp.1_Missense_Mutation_p.G194E	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1040	TSP type-1 5.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CTGCTTTGTTCCTTTACCACA	0.383													64	114					0	0	1	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43846451	43846451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:43846451C>T	uc010skx.1	-	13	1808	c.1808G>A	c.(1807-1809)CGA>CAA	p.R603Q		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	603	TSP type-1 1.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ATTACATGATCGAAATTTCAT	0.398													8	20					0	0	1	0	0
DBX2	440097	broad.mit.edu	37	12	45410272	45410272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:45410272G>A	uc001rok.1	-	4	989	c.817C>T	c.(817-819)CCT>TCT	p.P273S		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	273						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		CATGGAGAAGGGAAACCCAGA	0.488													44	118					0	0	1	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459056	45459056	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:45459056C>T	uc001rol.2	-	1		c.139G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						AATTGGAGTTCGTTTCCTTCC	0.443													16	34					0	0	1	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46318574	46318574	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:46318574G>A	uc001rox.2	-	12	4130	c.3843C>T	c.(3841-3843)CCC>CCT	p.P1281P	SFRS2IP_uc001row.2_Silent_p.P966P	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	1281	Pro-rich.				spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		GTGGGGGAGGGGGTGGTGGTG	0.493													63	126					0	0	1	0	0
SFRS2IP	9169	broad.mit.edu	37	12	46321796	46321796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:46321796G>A	uc001rox.2	-	11	1975	c.1688C>T	c.(1687-1689)CCT>CTT	p.P563L	SFRS2IP_uc001row.2_Missense_Mutation_p.P248L|SFRS2IP_uc001roy.1_Missense_Mutation_p.P637L	NM_004719	NP_004710	Q99590	SCAFB_HUMAN	splicing factor, arginine/serine-rich 2,	563					spliceosome assembly	nucleus	protein binding|zinc ion binding				0	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.209)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.1)		ACAAGATACAGGTTGGTACAC	0.353													30	68					0	0	1	0	0
SLC38A4	55089	broad.mit.edu	37	12	47173432	47173432	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:47173432C>T	uc001rpi.2	-	10	1078	c.679G>A	c.(679-681)GGA>AGA	p.G227R	SLC38A4_uc001rpj.2_Missense_Mutation_p.G227R|SLC38A4_uc009zkl.2_Missense_Mutation_p.G227R	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	227	Helical; (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity	p.G227E(1)		ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					AGAGAAAATCCACTGGTATAG	0.348													38	99					0	0	1	0	0
ENDOU	8909	broad.mit.edu	37	12	48110139	48110140	+	Missense_Mutation	DNP	CT	TC	TC			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:48110139_48110140CT>TC	uc001rpu.1	-	6	848_849	c.694_695AG>GA	c.(694-696)AGA>GAA	p.R232E	ENDOU_uc010sll.1_5'UTR|ENDOU_uc001rpt.1_Missense_Mutation_p.R191E|ENDOU_uc010slm.1_Missense_Mutation_p.R169E|uc001rpv.2_5'Flank	NM_006025	NP_006016	P21128	ENDOU_HUMAN	placental protein 11 precursor	232					female pregnancy|immune response|proteolysis	cytoplasm|extracellular space|plasma membrane	endoribonuclease activity|growth factor activity|manganese ion binding|polysaccharide binding|RNA binding|scavenger receptor activity|serine-type peptidase activity			ovary(2)|pancreas(1)	3						CATGATCTCTCTGAGGAAGGCG	0.579											OREG0021752	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	41	65					0	0	1	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48133002	48133002	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:48133002C>T	uc009zkp.2	-	23	2699	c.2259G>A	c.(2257-2259)TGG>TGA	p.W753*	uc001rpv.2_Intron|RAPGEF3_uc001rpw.2_Nonsense_Mutation_p.W88*|RAPGEF3_uc001rpx.2_Nonsense_Mutation_p.W210*|RAPGEF3_uc010sln.1_Nonsense_Mutation_p.W250*|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Nonsense_Mutation_p.W753*|RAPGEF3_uc001rpz.3_Nonsense_Mutation_p.W795*	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	753					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		CCCGGTGGTTCCATGAGGGAT	0.557													23	27					0	0	1	0	0
COL2A1	1280	broad.mit.edu	37	12	48375124	48375124	+	Splice_Site	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:48375124A>C	uc001rqu.2	-	37	2644	c.2463_splice	c.e37+1	p.P821_splice	COL2A1_uc009zkw.2_Splice_Site|COL2A1_uc001rqv.2_Splice_Site_p.P752_splice	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor						axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GCAGACACTCACCGGAGCGCC	0.657													5	19					0	0	1	0	0
CACNB3	784	broad.mit.edu	37	12	49221400	49221400	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:49221400G>A	uc001rsl.1	+	13	1374	c.1173G>A	c.(1171-1173)GAG>GAA	p.E391E	CACNB3_uc010sly.1_Silent_p.E378E|CACNB3_uc010slz.1_Silent_p.E390E|CACNB3_uc001rsk.1_Silent_p.E238E	NM_000725	NP_000716	P54284	CACB3_HUMAN	calcium channel, voltage-dependent, beta 3	391					axon guidance|membrane depolarization|synaptic transmission	cytosol|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity				0					Verapamil(DB00661)	GTGGCGAGGAGCACTCCCCCC	0.632													17	33					0	0	1	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50189359	50189360	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:50189359_50189360CC>TT	uc009zlk.2	-	8	2485_2486	c.2283_2284GG>AA	c.(2281-2286)GTGGAC>GTAAAC	p.D762N	NCKAP5L_uc001rvc.3_5'UTR|NCKAP5L_uc001rvb.2_Missense_Mutation_p.D355N	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	758										central_nervous_system(1)	1						GGCTCCAGGTCCACCCGGGCCC	0.663													14	14					0	0	1	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50190431	50190431	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:50190431G>A	uc009zlk.2	-	8	1414	c.1212C>T	c.(1210-1212)CCC>CCT	p.P404P	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_5'UTR	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	400	Pro-rich.									central_nervous_system(1)	1						TGCTAAGGAAGGGGAGGGGCC	0.632													11	20					0	0	1	0	0
ACCN2	41	broad.mit.edu	37	12	50473723	50473723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:50473723G>A	uc001rvw.2	+	8	1319	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K	ACCN2_uc001rvv.2_Missense_Mutation_p.E364K|ACCN2_uc009zln.2_Missense_Mutation_p.E155K|ACCN2_uc009zlo.2_Missense_Mutation_p.E364K	NM_001095	NP_001086	P78348	ACCN2_HUMAN	amiloride-sensitive cation channel 2, neuronal	364	Extracellular (By similarity).				calcium ion transport|response to pH|signal transduction	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(1)	1					Amiloride(DB00594)	CTGCGTGTGTGAAATGCCTTG	0.547													71	157					0	0	1	0	0
CELA1	1990	broad.mit.edu	37	12	51723610	51723610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:51723610G>A	uc001ryi.1	-	7	658	c.617C>T	c.(616-618)TCT>TTT	p.S206F		NM_001971	NP_001962	Q9UNI1	CELA1_HUMAN	chymotrypsin-like elastase family, member 1	206	Peptidase S1.	Charge relay system (By similarity).			proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			breast(1)	1						GGGGCCCCCAGAGTCACCCTG	0.547													34	93					0	0	1	0	0
SLC4A8	9498	broad.mit.edu	37	12	51882498	51882498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:51882498C>T	uc001rys.1	+	18	2480	c.2302C>T	c.(2302-2304)CGC>TGC	p.R768C	SLC4A8_uc001rym.2_Missense_Mutation_p.R715C|SLC4A8_uc001ryn.2_Missense_Mutation_p.R715C|SLC4A8_uc001ryo.2_Missense_Mutation_p.R715C|SLC4A8_uc010snj.1_Missense_Mutation_p.R795C|SLC4A8_uc001ryr.2_Missense_Mutation_p.R768C	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	768	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		AAGGGATGATCGCGGATGGAT	0.378													51	109					0	0	1	0	0
GRASP	160622	broad.mit.edu	37	12	52408567	52408568	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:52408567_52408568CC>TT	uc001rzo.1	+	8	828_829	c.772_773CC>TT	c.(772-774)CCC>TTC	p.P258F	GRASP_uc001rzp.1_Missense_Mutation_p.P115F	NM_181711	NP_859062	Q7Z6J2	GRASP_HUMAN	GRP1 (general receptor for phosphoinositides	258	Interaction with PSCD3 (By similarity).					cell junction|perinuclear region of cytoplasm|postsynaptic membrane				central_nervous_system(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.0967)		GGGCTCGCTGCCCTTCGGGCCT	0.738													5	1					0	0	1	0	0
KRT7	3855	broad.mit.edu	37	12	52632527	52632527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:52632527G>A	uc001saa.1	+	4	788	c.661G>A	c.(661-663)GAG>AAG	p.E221K	KRT7_uc009zmf.1_Missense_Mutation_p.E221K	NM_005556	NP_005547	P08729	K2C7_HUMAN	keratin 7	221	Rod.|Coil 1B.				cytoskeleton organization|DNA replication|interphase|interspecies interaction between organisms|regulation of translation	Golgi apparatus|keratin filament|nucleus	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.105)		CCTGAATGATGAGATCAACTT	0.562													47	112					0	0	1	0	0
KRT75	9119	broad.mit.edu	37	12	52827961	52827961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:52827961C>T	uc001saj.2	-	1	150	c.128G>A	c.(127-129)GGG>GAG	p.G43E		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	43	Gly-rich.|Head.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		GCCCCCACTCCCTGCTGCAGA	0.672													40	66					0	0	1	0	0
KRT6A	3853	broad.mit.edu	37	12	52884658	52884658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:52884658C>T	uc001sam.2	-	4	1105	c.896G>A	c.(895-897)AGA>AAA	p.R299K		NM_005554	NP_005545	P02538	K2C6A_HUMAN	keratin 6A	299	Coil 1B.|Rod.				cell differentiation|ectoderm development|positive regulation of cell proliferation	keratin filament	protein binding|structural constituent of cytoskeleton			ovary(4)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.189)		ATACAAGGCTCTCAGGAAGTT	0.483													34	70					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52966443	52966443	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:52966443G>A	uc001sap.1	-	2	528	c.480C>T	c.(478-480)TTC>TTT	p.F160F		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	160	Coil 1A.|Rod.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		GCTGCTCTAGGAAGCGTACCT	0.542													19	29					0	0	1	0	0
KRT2	3849	broad.mit.edu	37	12	53038870	53038870	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53038870C>A	uc001sat.2	-	9	1886	c.1853G>T	c.(1852-1854)GGT>GTT	p.G618V		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	618	Tail.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		AGAGCTAGAACCCCCACCTCC	0.547													32	90					1.59361e-14	1.61054e-14	1	1	0
KRT2	3849	broad.mit.edu	37	12	53045727	53045727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53045727C>T	uc001sat.2	-	1	233	c.200G>A	c.(199-201)GGA>GAA	p.G67E		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	67	Head.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		CTTGGTCCCTCCAAGGCCAAC	0.378													16	59					0	0	1	0	0
KRT76	51350	broad.mit.edu	37	12	53166002	53166002	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53166002A>G	uc001sax.2	-	5	1067	c.1013T>C	c.(1012-1014)GTG>GCG	p.V338A		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	338	Rod.|Linker 12.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						GGACAGAACCACAGACGTGTC	0.567													18	55					0	0	1	0	0
SPRYD3	84926	broad.mit.edu	37	12	53470949	53470949	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53470949G>A	uc001sbt.1	-	2	141	c.120C>T	c.(118-120)TTC>TTT	p.F40F	SPRYD3_uc010snw.1_5'UTR	NM_032840	NP_116229	Q8NCJ5	SPRY3_HUMAN	SPRY domain containing 3	40	B30.2/SPRY.									central_nervous_system(1)	1						CCTGATATCGGAAAGCTCGGA	0.473													45	78					0	0	1	0	0
ESPL1	9700	broad.mit.edu	37	12	53682885	53682885	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53682885C>T	uc001sck.2	+	21	4811	c.4720C>T	c.(4720-4722)CTG>TTG	p.L1574L	ESPL1_uc001scj.2_Silent_p.L1249L	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	1574					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						TCTTTCTACCCTGGACTCCAT	0.498													21	51					0	0	1	0	0
AAAS	8086	broad.mit.edu	37	12	53701346	53701346	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53701346G>T	uc001scr.3	-	16	1731	c.1568C>A	c.(1567-1569)CCA>CAA	p.P523Q	AAAS_uc001scs.3_Missense_Mutation_p.P490Q	NM_015665	NP_056480	Q9NRG9	AAAS_HUMAN	achalasia, adrenocortical insufficiency,	523					carbohydrate metabolic process|glucose transport|nucleocytoplasmic transport|regulation of glucose transport|regulation of nucleocytoplasmic transport|transmembrane transport|viral reproduction	nuclear pore				ovary(1)	1						GGCAGAGGTTGGGGATGTCTC	0.562													23	41					9.86323e-18	9.99546e-18	1	1	0
SP1	6667	broad.mit.edu	37	12	53803251	53803251	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53803251T>C	uc001scw.2	+	5	2047	c.1950T>C	c.(1948-1950)CAT>CAC	p.H650H	SP1_uc010sog.1_Silent_p.H643H	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	650	VZV IE62-binding.|C2H2-type 1.				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		TGCGCTGGCATACAGGCGAGA	0.532													38	64					0	0	1	0	0
ATP5G2	517	broad.mit.edu	37	12	54063657	54063657	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:54063657C>T	uc009znc.2	-	4	816	c.115G>A	c.(115-117)GAG>AAG	p.E39K	ATP5G2_uc001sec.2_Missense_Mutation_p.E96K|ATP5G2_uc001sed.2_Missense_Mutation_p.E55K	NM_001002031	NP_001002031	Q06055	AT5G2_HUMAN	ATP synthase, H+ transporting, mitochondrial F0	39					ATP hydrolysis coupled proton transport|ATP synthesis coupled proton transport	integral to membrane|mitochondrial proton-transporting ATP synthase complex|proton-transporting ATP synthase complex, coupling factor F(o)	hydrogen ion transmembrane transporter activity|lipid binding			ovary(1)	1						TAAGGTACCTCATCTGTCAGT	0.552													23	73					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54795612	54795612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:54795612G>A	uc001sga.2	-	22	2322	c.2254C>T	c.(2254-2256)CCT>TCT	p.P752S		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	752	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						CGGAGATGAGGGACTGTAAAC	0.552													21	49					0	0	1	0	0
ITGA5	3678	broad.mit.edu	37	12	54799100	54799100	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:54799100G>A	uc001sga.2	-	12	1143	c.1075C>T	c.(1075-1077)CCT>TCT	p.P359S	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	359	Extracellular (Potential).|FG-GAP 5.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						ACCTCCTGAGGCCGCCCGTCA	0.632													14	37					0	0	1	0	0
OR6C1	390321	broad.mit.edu	37	12	55714946	55714946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55714946C>T	uc010spi.1	+	1	563	c.563C>T	c.(562-564)TCA>TTA	p.S188L		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	188	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						CTTGCTTGTTCAGACACAAAA	0.353													35	49					0	0	1	0	0
OR6C1	390321	broad.mit.edu	37	12	55715170	55715170	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55715170A>G	uc010spi.1	+	1	787	c.787A>G	c.(787-789)AAA>GAA	p.K263E		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						ACCCTCAGCAAAAGATAGAGT	0.433													64	110					0	0	1	0	0
OR6C3	254786	broad.mit.edu	37	12	55725967	55725967	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55725967C>T	uc010spj.1	+	1	483	c.483C>T	c.(481-483)CTC>CTT	p.L161L		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	161	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TGCTTCTCCTCCAGCTGGATT	0.443													94	205					0	0	1	0	0
OR6C75	390323	broad.mit.edu	37	12	55758905	55758905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55758905C>T	uc010spk.1	+	1	11	c.11C>T	c.(10-12)TCC>TTC	p.S4F		NM_001005497	NP_001005497	A6NL08	O6C75_HUMAN	olfactory receptor, family 6, subfamily C,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3						ATGAGAAATTCCACAGCAGTA	0.323													27	77					0	0	1	0	0
OR6C76	390326	broad.mit.edu	37	12	55820040	55820040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55820040G>A	uc010spm.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CATCAGAAATGAAAAATAGAA	0.348													33	47					0	0	1	0	0
OR6C76	390326	broad.mit.edu	37	12	55820648	55820648	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55820648T>C	uc010spm.1	+	1	611	c.611T>C	c.(610-612)CTT>CCT	p.L204P		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTTTACTCTTATATCCACT	0.383													9	19					0	0	1	0	0
OR6C76	390326	broad.mit.edu	37	12	55820738	55820739	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55820738_55820739CC>TT	uc010spm.1	+	1	701_702	c.701_702CC>TT	c.(700-702)GCC>GTT	p.A234V		NM_001005183	NP_001005183	A6NM76	O6C76_HUMAN	olfactory receptor, family 6, subfamily C,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGAAAAAAAGCCTTTTCAACCT	0.376													9	22					0	0	1	0	0
OR6C2	341416	broad.mit.edu	37	12	55846191	55846191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:55846191C>T	uc001sgz.1	+	1	194	c.194C>T	c.(193-195)TCC>TTC	p.S65F		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	65	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AGAAATTTTTCCTTCTTAGAA	0.398													40	63					0	0	1	0	0
ITGA7	3679	broad.mit.edu	37	12	56086729	56086729	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:56086729C>T	uc001shh.2	-	21	2975	c.2755G>A	c.(2755-2757)GAG>AAG	p.E919K	ITGA7_uc001shg.2_Missense_Mutation_p.E915K|ITGA7_uc010sps.1_Missense_Mutation_p.E822K|ITGA7_uc009znw.2_Missense_Mutation_p.E162K|ITGA7_uc009znx.2_Missense_Mutation_p.E796K	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	959	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						GGCTCCAGCTCCCGCCGCCTC	0.592													28	50					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57584759	57584759	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:57584759C>T	uc001snd.2	+	43	7669	c.7203C>T	c.(7201-7203)ATC>ATT	p.I2401I		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2401	LDL-receptor class B 24.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	TGGACAAGATCGAGCGGTGCG	0.642													16	42					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57594309	57594310	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:57594309_57594310CC>TT	uc001snd.2	+	63	10565_10566	c.10099_10100CC>TT	c.(10099-10101)CCG>TTG	p.P3367L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3367	Extracellular (Potential).|LDL-receptor class A 21.				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	AGACGAGCCCCCGGACTGCCGT	0.639													45	59					0	0	1	0	0
LRP1	4035	broad.mit.edu	37	12	57603498	57603498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:57603498G>A	uc001snd.2	+	80	12752	c.12286G>A	c.(12286-12288)GAC>AAC	p.D4096N		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4096	LDL-receptor class B 34.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CTTCAGCATCGACGTCTTTGA	0.562													43	47					0	0	1	0	0
R3HDM2	22864	broad.mit.edu	37	12	57662177	57662177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:57662177G>A	uc009zpm.1	-	16	1932	c.1897C>T	c.(1897-1899)CCT>TCT	p.P633S	R3HDM2_uc010srn.1_RNA|R3HDM2_uc001snu.2_Missense_Mutation_p.P328S|R3HDM2_uc001snr.2_Missense_Mutation_p.P360S|R3HDM2_uc001sns.2_Missense_Mutation_p.P633S|R3HDM2_uc001snt.2_Missense_Mutation_p.P647S|R3HDM2_uc009zpn.1_Intron	NM_014925	NP_055740	Q9Y2K5	R3HD2_HUMAN	R3H domain containing 2	633	Gln-rich.					nucleus	nucleic acid binding			ovary(2)	2						TGGCTCACAGGGACCAGCATG	0.557													43	84					0	0	1	0	0
KIF5A	3798	broad.mit.edu	37	12	57965879	57965879	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:57965879C>T	uc001sor.1	+	14	1606	c.1398C>T	c.(1396-1398)GTC>GTT	p.V466V	KIF5A_uc010srr.1_Silent_p.V377V	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	466					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						ACGAGAAGGTCCAGCGGGAGC	0.572													19	30					0	0	1	0	0
KIF5A	3798	broad.mit.edu	37	12	57976385	57976385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:57976385G>A	uc001sor.1	+	27	3201	c.2993G>A	c.(2992-2994)GGA>GAA	p.G998E	KIF5A_uc010srr.1_Missense_Mutation_p.G909E|uc001sos.2_5'Flank	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	998	Globular.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						ATCTCTTCAGGAAATGCCACA	0.438													76	168					0	0	1	0	0
FAM19A2	338811	broad.mit.edu	37	12	62147424	62147424	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:62147424C>T	uc001sqw.2	-	4	1876	c.363G>A	c.(361-363)GGG>GGA	p.G121G	FAM19A2_uc001sqv.2_RNA|FAM19A2_uc001sqx.2_Silent_p.G121G|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	121						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		TGACTTTATTCCCAGAGGAAC	0.433													32	48					0	0	1	0	0
SRGAP1	57522	broad.mit.edu	37	12	64502736	64502736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:64502736C>T	uc010ssp.1	+	16	1894	c.1838C>T	c.(1837-1839)GCG>GTG	p.A613V	SRGAP1_uc001srv.2_Missense_Mutation_p.A550V	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	613	Rho-GAP.				axon guidance	cytosol		p.A613V(1)		ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		TATGAGAGGGCGCTTCACATC	0.443													41	83					0	0	1	0	0
SRGAP1	57522	broad.mit.edu	37	12	64521498	64521498	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:64521498T>A	uc010ssp.1	+	20	2590	c.2534T>A	c.(2533-2535)TTA>TAA	p.L845*	SRGAP1_uc001srv.2_Nonsense_Mutation_p.L782*	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	845					axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		GACGGCTATTTAGCCAGGTAA	0.592													25	43					0	0	1	0	0
GNS	2799	broad.mit.edu	37	12	65146506	65146506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:65146506C>T	uc001ssg.3	-	2	394	c.224G>A	c.(223-225)GGA>GAA	p.G75E	GNS_uc001ssf.2_Missense_Mutation_p.G19E|GNS_uc010ssq.1_Missense_Mutation_p.G107E|GNS_uc010ssr.1_Intron	NM_002076	NP_002067	P15586	GNS_HUMAN	glucosamine (N-acetyl)-6-sulfatase precursor	75						lysosome	metal ion binding|N-acetylglucosamine-6-sulfatase activity|protein binding			central_nervous_system(1)	1	Lung NSC(1;7.25e-14)|all_lung(1;1.25e-12)		LUAD - Lung adenocarcinoma(6;0.115)	GBM - Glioblastoma multiforme(28;0.0435)		CCCCATCTCTCCGATGAGAGC	0.348													14	16					0	0	1	0	0
WIF1	11197	broad.mit.edu	37	12	65462560	65462560	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:65462560A>C	uc001ssk.2	-	4	667	c.522T>G	c.(520-522)TTT>TTG	p.F174L		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	174	WIF.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		GACATGTTTTAAAGAAGATAG	0.373			T	HMGA2	pleomorphic salivary gland adenoma								34	66					0	0	1	0	0
RPSAP52	204010	broad.mit.edu	37	12	66152165	66152165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:66152165G>A	uc001sso.2	-	2	779	c.358C>T	c.(358-360)CCT>TCT	p.P120S		NR_026825				SubName: Full=Putative uncharacterized protein RPSAP52;												0						GTCTCTTCAGGATCTCTGTAG	0.478													3	12					0	0	1	0	0
CAND1	55832	broad.mit.edu	37	12	67701251	67701251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:67701251C>T	uc001stn.2	+	11	3441	c.3004C>T	c.(3004-3006)CCA>TCA	p.P1002S	CAND1_uc001sto.2_Missense_Mutation_p.P512S	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	1002	HEAT 24.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		ACCTATTGATCCACTGTTAAA	0.348													9	21					0	0	1	0	0
NUP107	57122	broad.mit.edu	37	12	69114938	69114938	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:69114938T>C	uc001suf.2	+	15	1407	c.1292T>C	c.(1291-1293)TTA>TCA	p.L431S	NUP107_uc001sug.2_Missense_Mutation_p.L278S|NUP107_uc010stj.1_Missense_Mutation_p.L402S	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	431					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			TATGCAGCTTTAAGTGGGAAT	0.244													47	80					0	0	1	0	0
FRS2	10818	broad.mit.edu	37	12	69965945	69965945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:69965945C>T	uc001suy.2	+	9	970	c.460C>T	c.(460-462)CCC>TCC	p.P154S	FRS2_uc001suz.2_Missense_Mutation_p.P154S|FRS2_uc009zrj.2_Missense_Mutation_p.P154S|FRS2_uc009zrk.2_Missense_Mutation_p.P154S	NM_006654	NP_006645	Q8WU20	FRS2_HUMAN	fibroblast growth factor receptor substrate 2	154					activation of MAPKK activity|activation of phospholipase C activity|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|transmembrane receptor protein tyrosine phosphatase signaling pathway	endomembrane system|endosome|integral to plasma membrane|membrane fraction	fibroblast growth factor receptor binding|insulin receptor binding|phosphatase activator activity|transmembrane receptor protein tyrosine kinase adaptor activity			prostate(1)|kidney(1)	2	Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.94e-18)|Lung(24;9.68e-05)|OV - Ovarian serous cystadenocarcinoma(12;0.000984)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TCCCCGATATCCCTCATTTGG	0.478													38	56					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71032987	71032987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:71032987G>A	uc001swi.1	-	14	2367	c.1951C>T	c.(1951-1953)CTT>TTT	p.L651F	PTPRR_uc001swf.1_RNA|PTPRR_uc001swg.1_RNA|PTPRR_uc001swh.1_Missense_Mutation_p.L406F|PTPRR_uc009zrs.2_Missense_Mutation_p.L500F|PTPRR_uc010stq.1_Missense_Mutation_p.L539F|PTPRB_uc001swc.3_5'Flank|PTPRB_uc001swa.3_5'Flank|PTPRB_uc001swd.3_5'Flank|PTPRB_uc009zrr.1_5'Flank|PTPRB_uc001swe.2_5'Flank	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	651	Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TCTGCTGAAAGTCTGCTCTCA	0.443													87	168					0	0	1	0	0
TPH2	121278	broad.mit.edu	37	12	72338074	72338074	+	Missense_Mutation	SNP	G	A	A	rs77828767		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:72338074G>A	uc009zrw.1	+	3	397	c.256G>A	c.(256-258)GAA>AAA	p.E86K	TPH2_uc001swy.2_5'UTR	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	86	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	GTTTCCACAGGAAAAACGTGT	0.423													29	53					0	0	1	0	0
TPH2	121278	broad.mit.edu	37	12	72343389	72343389	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:72343389C>T	uc009zrw.1	+	5	703	c.562C>T	c.(562-564)CGA>TGA	p.R188*	TPH2_uc001swy.2_Nonsense_Mutation_p.R98*	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	188					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	CAATGTCTATCGACAGAGAAG	0.348													30	56					0	0	1	0	0
LIN7A	8825	broad.mit.edu	37	12	81205386	81205386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:81205386C>T	uc001szj.1	-	5	753	c.560G>A	c.(559-561)CGA>CAA	p.R187Q	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	187	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						TGGGGTGTATCGCACCACCAG	0.448													25	47					0	0	1	0	0
PPFIA2	8499	broad.mit.edu	37	12	81741400	81741400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:81741400C>T	uc001szo.1	-	18	2305	c.2144G>A	c.(2143-2145)AGT>AAT	p.S715N	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_Intron	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	641										ovary(3)|lung(2)|pancreas(1)	6						GGGAGATGAACTGGCCAGCGA	0.542													82	181					0	0	1	0	0
SLC6A15	55117	broad.mit.edu	37	12	85279304	85279304	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:85279304T>A	uc001szv.2	-	4	977	c.484A>T	c.(484-486)ATT>TTT	p.I162F	SLC6A15_uc010sul.1_Missense_Mutation_p.I55F|SLC6A15_uc001szy.2_Missense_Mutation_p.I162F	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	162	Helical; Name=3; (Potential).				cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						CTCCAGCCAATGATGACGTTG	0.378													19	55					0	0	1	0	0
CEP290	80184	broad.mit.edu	37	12	88500490	88500490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:88500490C>T	uc001tar.2	-	25	3123	c.2779G>A	c.(2779-2781)GAA>AAA	p.E927K	CEP290_uc001taq.2_5'Flank|CEP290_uc001tat.2_Missense_Mutation_p.E720K	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	927	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TCACAAACTTCAGCCTCCATT	0.274													4	22					0	0	1	0	0
FGD6	55785	broad.mit.edu	37	12	95566440	95566440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:95566440G>A	uc001tdp.3	-	3	2746	c.2522C>T	c.(2521-2523)TCT>TTT	p.S841F	FGD6_uc009zsx.2_5'UTR	NM_018351	NP_060821	Q6ZV73	FGD6_HUMAN	FYVE, RhoGEF and PH domain containing 6	841					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|breast(1)	3						ATCTTCATCAGAACTGTTGAT	0.453													54	88					0	0	1	0	0
METAP2	10988	broad.mit.edu	37	12	95869888	95869888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:95869888G>A	uc001tec.2	+	2	327	c.193G>A	c.(193-195)GAT>AAT	p.D65N	METAP2_uc010suv.1_Missense_Mutation_p.D65N|METAP2_uc009ztd.2_Intron|METAP2_uc001ted.2_Missense_Mutation_p.D64N|METAP2_uc001tef.2_Missense_Mutation_p.D64N|METAP2_uc001tee.2_RNA	NM_006838	NP_006829	P50579	AMPM2_HUMAN	methionyl aminopeptidase 2	65					N-terminal protein amino acid modification|peptidyl-methionine modification|protein processing|proteolysis	cytoplasm	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0					L-Methionine(DB00134)	AGCCTCAGTGGATGAAGTAGC	0.358													15	17					0	0	1	0	0
C12orf63	374467	broad.mit.edu	37	12	97093801	97093801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:97093801C>T	uc001tet.1	+	13	1757	c.1679C>T	c.(1678-1680)TCC>TTC	p.S560F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	560										skin(6)|ovary(1)	7						TATGAGATATCCCAAATTTTC	0.318													33	58					0	0	1	0	0
MIR135A2	406926	broad.mit.edu	37	12	97957657	97957657	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:97957657G>A	hsa-mir-135a-2|MI0000453	+			c.68G>A			RMST_uc001tfa.1_Intron|uc001tfb.2_RNA																	0						CTCATGTAGGGATGGAAGCCA	0.378													5	13					0	0	1	0	0
GAS2L3	283431	broad.mit.edu	37	12	101018124	101018124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:101018124C>T	uc001thu.2	+	10	1767	c.1541C>T	c.(1540-1542)TCT>TTT	p.S514F	GAS2L3_uc009zty.2_Missense_Mutation_p.S514F|GAS2L3_uc001thv.2_Missense_Mutation_p.S410F	NM_174942	NP_777602	Q86XJ1	GA2L3_HUMAN	growth arrest-specific 2 like 3	514					cell cycle arrest					skin(1)	1						CCTAAACCTTCTTTCCAGTCC	0.438													32	44					0	0	1	0	0
ANO4	121601	broad.mit.edu	37	12	101520726	101520726	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:101520726C>T	uc010svm.1	+	27	3318	c.2746C>T	c.(2746-2748)CGA>TGA	p.R916*	ANO4_uc001thw.2_Nonsense_Mutation_p.R881*|ANO4_uc001thx.2_Nonsense_Mutation_p.R916*|ANO4_uc001thy.2_Nonsense_Mutation_p.R436*	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	916	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CCTAAGGGATCGAATGAGAAG	0.438										HNSCC(74;0.22)			29	47					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101552103	101552103	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:101552103C>T	uc001thz.3	-	14	2024	c.1634G>A	c.(1633-1635)GGA>GAA	p.G545E		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	545	Cytoplasmic (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						CTGTTTTCTTCCTCCTGGAAA	0.343													33	87					0	0	1	0	0
SLC5A8	160728	broad.mit.edu	37	12	101584311	101584311	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:101584311G>A	uc001thz.3	-	6	1158	c.768C>T	c.(766-768)ATC>ATT	p.I256I		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	256	Helical; (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						TGACACCGTAGATGCTGGTCC	0.383													43	90					0	0	1	0	0
UTP20	27340	broad.mit.edu	37	12	101715405	101715405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:101715405G>A	uc001tia.1	+	25	3195	c.3039G>A	c.(3037-3039)ATG>ATA	p.M1013I		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1013					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						CTATTCTGATGAGGTATTTAT	0.323													28	68					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102057248	102057248	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:102057248G>C	uc001tii.2	+	20	2293	c.2191G>C	c.(2191-2193)GAC>CAC	p.D731H	MYBPC1_uc001tig.2_Missense_Mutation_p.D756H|MYBPC1_uc010svq.1_Missense_Mutation_p.D718H|MYBPC1_uc001tih.2_Missense_Mutation_p.D756H|MYBPC1_uc001tij.2_Missense_Mutation_p.D731H|MYBPC1_uc010svr.1_Missense_Mutation_p.D731H|MYBPC1_uc010svs.1_Missense_Mutation_p.D731H|MYBPC1_uc010svt.1_Missense_Mutation_p.D719H|MYBPC1_uc010svu.1_Missense_Mutation_p.D712H|MYBPC1_uc001tik.2_Missense_Mutation_p.D705H|MYBPC1_uc001til.2_5'Flank|MYBPC1_uc001tim.2_5'Flank	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	731	Fibronectin type-III 2.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						CTCTGTCACTGACACGACTGT	0.443													69	104					0	0	1	0	0
C12orf42	374470	broad.mit.edu	37	12	103696003	103696003	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:103696003G>A	uc001tjt.2	-	6	1054	c.966C>T	c.(964-966)TTC>TTT	p.F322F	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Silent_p.F322F|C12orf42_uc001tju.2_Silent_p.F227F	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	322										ovary(1)|central_nervous_system(1)	2						TCTTGGAGGGGAAATGGGTGG	0.622													38	73					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104131471	104131471	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:104131471C>T	uc001tjw.2	+	53	5796	c.5610C>T	c.(5608-5610)GAC>GAT	p.D1870D	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1870	Extracellular (Potential).|FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TCTTGTTTGACCTGGGTGTGG	0.448													42	78					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104138999	104139000	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:104138999_104139000CC>TT	uc001tjw.2	+	57	6266_6267	c.6080_6081CC>TT	c.(6079-6081)TCC>TTT	p.S2027F	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2027	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						ATCACGGGCTCCGGGCAGTGCC	0.589													16	38					0	0	1	0	0
HSP90B1	7184	broad.mit.edu	37	12	104327931	104327932	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:104327931_104327932CC>TT	uc001tkb.1	+	5	714_715	c.609_610CC>TT	c.(607-612)TTCCTT>TTTTTT	p.L204F	HSP90B1_uc010swg.1_Intron|HSP90B1_uc009zui.1_Missense_Mutation_p.L204F	NM_003299	NP_003290	P14625	ENPL_HUMAN	heat shock protein 90kDa beta, member 1	204					actin rod assembly|anti-apoptosis|cellular response to ATP|ER-associated protein catabolic process|protein folding|protein transport|regulation of phosphoprotein phosphatase activity|response to hypoxia|sequestering of calcium ion	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|melanosome|microsome|midbody|perinuclear region of cytoplasm	ATP binding|calcium ion binding|low-density lipoprotein particle receptor binding|protein phosphatase binding|RNA binding|unfolded protein binding|virion binding			ovary(2)|skin(1)	3					Rifabutin(DB00615)	ATTCCGCCTTCCTTGTAGCAGA	0.431													25	68					0	0	1	0	0
GLT8D2	83468	broad.mit.edu	37	12	104391273	104391273	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:104391273T>C	uc001tkh.1	-	7	849	c.443A>G	c.(442-444)CAA>CGA	p.Q148R	GLT8D2_uc001tki.1_Missense_Mutation_p.Q148R	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	148	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						TTTCTCGTGTTGGTGGATAAG	0.408													70	126					0	0	1	0	0
KIAA1033	23325	broad.mit.edu	37	12	105551072	105551072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:105551072C>T	uc001tld.2	+	28	2971	c.2884C>T	c.(2884-2886)CTT>TTT	p.L962F	KIAA1033_uc010swr.1_Missense_Mutation_p.L963F|KIAA1033_uc010sws.1_Missense_Mutation_p.L774F	NM_015275	NP_056090	Q2M389	WAHS7_HUMAN	hypothetical protein LOC23325	962					endosome transport	WASH complex				kidney(1)|central_nervous_system(1)	2						AGAAGAAGGTCTTGCAGAAGA	0.294													21	46					0	0	1	0	0
APPL2	55198	broad.mit.edu	37	12	105582226	105582226	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:105582226C>T	uc001tlf.1	-	17	1678	c.1460_splice	c.e17-1	p.D487_splice	APPL2_uc010swt.1_Splice_Site_p.D444_splice|APPL2_uc001tlg.1_Splice_Site_p.D241_splice|APPL2_uc010swu.1_Splice_Site_p.D493_splice|APPL2_uc009zuq.2_Splice_Site_p.D444_splice	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH						cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						AAAAGAGAATCTGGAAGACAG	0.428													15	23					0	0	1	0	0
BTBD11	121551	broad.mit.edu	37	12	108013852	108013852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:108013852G>A	uc001tmk.1	+	11	3063	c.2542G>A	c.(2542-2544)GAG>AAG	p.E848K	BTBD11_uc009zut.1_Missense_Mutation_p.E729K|BTBD11_uc001tmj.2_Missense_Mutation_p.E848K|BTBD11_uc001tml.1_Missense_Mutation_p.E385K	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	848	ANK 5.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						CTTGTTAAAGGAGTTTAAGAC	0.562													19	54					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111748373	111748373	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:111748373A>G	uc001tsa.1	+	15	1940	c.1787A>G	c.(1786-1788)AAG>AGG	p.K596R		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	596	CUT 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCCCGGCCCAAGCCCTGGCGC	0.597													51	81					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111758418	111758418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:111758418C>T	uc001tsa.1	+	17	2758	c.2605C>T	c.(2605-2607)CCG>TCG	p.P869S		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	869						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						GCCCTACTACCCGGCCTACGT	0.726													6	17					0	0	1	0	0
CUX2	23316	broad.mit.edu	37	12	111785460	111785460	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:111785460G>A	uc001tsa.1	+	22	3945	c.3792G>A	c.(3790-3792)GAG>GAA	p.E1264E		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1264						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CTGACTCTGAGACTGAGGACC	0.632													35	58					0	0	1	0	0
ATXN2	6311	broad.mit.edu	37	12	111951182	111951182	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:111951182A>G	uc001tsj.2	-	11	2179	c.2017T>C	c.(2017-2019)TGG>CGG	p.W673R	ATXN2_uc001tsh.2_Missense_Mutation_p.W408R|ATXN2_uc001tsi.2_Missense_Mutation_p.W384R|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Missense_Mutation_p.W408R	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	673	Pro-rich.				cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						ACTGATGACCACGTTCCCCCC	0.502													30	78					0	0	1	0	0
ALDH2	217	broad.mit.edu	37	12	112227635	112227636	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:112227635_112227636CC>TT	uc001tst.2	+	5	890_891	c.449_450CC>TT	c.(448-450)GCC>GTT	p.A150V	ALDH2_uc010syi.1_Missense_Mutation_p.A103V|ALDH2_uc009zvy.2_Missense_Mutation_p.A150V	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	150					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity	p.A150T(1)		skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	AGGTATTATGCCGGCTGGGCTG	0.505			T	HMGA2	leiomyoma								15	31					0	0	1	0	0
ALDH2	217	broad.mit.edu	37	12	112237856	112237856	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:112237856G>A	uc001tst.2	+	11	1836	c.1395G>A	c.(1393-1395)GCG>GCA	p.A465A	ALDH2_uc010syi.1_Silent_p.A418A|ALDH2_uc009zvy.2_Silent_p.A389A	NM_000690	NP_000681	P05091	ALDH2_HUMAN	mitochondrial aldehyde dehydrogenase 2	465					carbohydrate metabolic process|ethanol oxidation|neurotransmitter biosynthetic process|xenobiotic metabolic process	mitochondrial matrix	aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase|electron carrier activity			skin(2)|ovary(1)|central_nervous_system(1)	4					Disulfiram(DB00822)|Guanidine(DB00536)|NADH(DB00157)|Nitroglycerin(DB00727)	CCCTCCAGGCGGGCACTGTGT	0.567			T	HMGA2	leiomyoma								16	16					0	0	1	0	0
NAA25	80018	broad.mit.edu	37	12	112491380	112491380	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:112491380A>G	uc001ttm.2	-	15	1730	c.1710T>C	c.(1708-1710)TTT>TTC	p.F570F	NAA25_uc001ttn.3_RNA|NAA25_uc009zvz.1_Silent_p.F542F|NAA25_uc009zwa.1_Silent_p.F570F	NM_024953	NP_079229	Q14CX7	NAA25_HUMAN	mitochondrial distribution and morphology 20	570						cytoplasm	protein binding			ovary(1)|breast(1)|pancreas(1)	3						GGTTGGAGTGAAAAAACCTGA	0.418													14	19					0	0	1	0	0
C12orf51	283450	broad.mit.edu	37	12	112673321	112673321	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:112673321A>T	uc009zwc.2	-	29	4464	c.4446T>A	c.(4444-4446)GAT>GAA	p.D1482E		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GAACCACATAATCTGCCAGCT	0.557													35	41					0	0	1	0	0
OAS1	4938	broad.mit.edu	37	12	113344883	113344883	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:113344883C>A	uc001tud.2	+	1	145	c.39C>A	c.(37-39)GAC>GAA	p.D13E	OAS1_uc010syn.1_Missense_Mutation_p.D12E|OAS1_uc010syo.1_Missense_Mutation_p.D12E|OAS1_uc001tub.2_Missense_Mutation_p.D13E|OAS1_uc001tuc.2_Missense_Mutation_p.D13E|OAS1_uc009zwf.2_Missense_Mutation_p.D12E	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	13					interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						AATCTCTGGACAAGTTCATTG	0.473													76	121					5.62478e-27	5.74562e-27	1	1	0
OAS2	4939	broad.mit.edu	37	12	113425020	113425020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:113425020G>A	uc001tuj.2	+	2	495	c.355G>A	c.(355-357)GAG>AAG	p.E119K	OAS2_uc001tuh.2_Missense_Mutation_p.E119K|OAS2_uc001tui.1_Missense_Mutation_p.E119K	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	119	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						AAACAATTTCGAGATCCAGAA	0.458													31	76					0	0	1	0	0
DTX1	1840	broad.mit.edu	37	12	113532914	113532914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:113532914G>A	uc001tuk.1	+	7	1790	c.1454G>A	c.(1453-1455)GGG>GAG	p.G485E		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	485					negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						CAGCCGCCTGGGAAGATGGAG	0.647													42	79					0	0	1	0	0
SDS	10993	broad.mit.edu	37	12	113835141	113835142	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:113835141_113835142CC>TT	uc001tvg.2	-	6	603_604	c.481_482GG>AA	c.(481-483)GGG>AAG	p.G161K	SDS_uc001tvh.1_Missense_Mutation_p.G161K	NM_006843	NP_006834	P20132	SDHL_HUMAN	serine dehydratase	161					gluconeogenesis|L-serine catabolic process|pyruvate biosynthetic process	cytoplasm	L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|protein homodimerization activity|pyridoxal phosphate binding			pancreas(1)	1					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CGCGATGGCCCCCGGCTTTTCC	0.673													40	89					0	0	1	0	0
LHX5	64211	broad.mit.edu	37	12	113909184	113909184	+	Silent	SNP	C	T	T	rs142448695		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:113909184C>T	uc001tvj.1	-	1	694	c.120G>A	c.(118-120)TCG>TCA	p.S40S		NM_022363	NP_071758	Q9H2C1	LHX5_HUMAN	LIM homeobox protein 5	40	LIM zinc-binding 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGCACTTCTCCGAGAGGTTGG	0.612													11	41					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114282522	114282522	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:114282522G>A	uc009zwi.2	-	23	2880	c.2736C>T	c.(2734-2736)TCC>TCT	p.S912S	RBM19_uc001tvn.3_Silent_p.S912S|RBM19_uc001tvm.2_Silent_p.S912S	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	912	RRM 6.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GGGTCACCTCGGAGTCGGCCC	0.642													12	27					0	0	1	0	0
RBM19	9904	broad.mit.edu	37	12	114384269	114384269	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:114384269G>A	uc009zwi.2	-	12	1563	c.1419C>T	c.(1417-1419)CTC>CTT	p.L473L	RBM19_uc001tvn.3_Silent_p.L473L|RBM19_uc001tvm.2_Silent_p.L473L	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	473	RRM 3.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					GTAACACGTGGAGCATCCTGC	0.557													16	51					0	0	1	0	0
MED13L	23389	broad.mit.edu	37	12	116435009	116435009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:116435009G>A	uc001tvw.2	-	15	2651	c.2596C>T	c.(2596-2598)CCC>TCC	p.P866S		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	866					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		GGTGGAGTGGGAAACATCCTT	0.398													32	67					0	0	1	0	0
FBXW8	26259	broad.mit.edu	37	12	117426628	117426628	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:117426628T>C	uc001twg.1	+	7	1275	c.1193T>C	c.(1192-1194)GTT>GCT	p.V398A	FBXW8_uc001twf.1_Missense_Mutation_p.V332A|FBXW8_uc009zwp.1_RNA	NM_153348	NP_699179	Q8N3Y1	FBXW8_HUMAN	F-box and WD repeat domain containing 8 isoform	398							protein binding			ovary(2)|pancreas(1)	3	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0353)		GCCAACCAAGTTGCTTTTGGT	0.463													61	122					0	0	1	0	0
FBXW8	26259	broad.mit.edu	37	12	117462069	117462070	+	Silent	DNP	CC	AT	AT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:117462069_117462070CC>AT	uc001twg.1	+	9	1567_1568	c.1485_1486CC>AT	c.(1483-1488)GGCCTG>GGATTG	p.495_496GL>GL	FBXW8_uc001twf.1_Silent_p.429_430GL>GL|FBXW8_uc009zwp.1_RNA	NM_153348	NP_699179	Q8N3Y1	FBXW8_HUMAN	F-box and WD repeat domain containing 8 isoform	495_496	WD 5.						protein binding			ovary(2)|pancreas(1)	3	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0353)		GCGAGGAAGGCCTGGTGTCCGT	0.559													29	59					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117672529	117672529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:117672529C>T	uc001twm.1	-	21	3762	c.3076G>A	c.(3076-3078)GGG>AGG	p.G1026R		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1026	FAD-binding FR-type.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TCCTGGCTCCCGTTGGTGTGG	0.577													15	29					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117696830	117696830	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:117696830C>T	uc001twm.1	-	15	3158	c.2472_splice	c.e15+1	p.E824_splice	NOS1_uc001twn.1_5'Flank	NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal						multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	GCTCATCTCACCTCCCCATTC	0.488													19	46					0	0	1	0	0
NOS1	4842	broad.mit.edu	37	12	117768314	117768314	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:117768314G>A	uc001twm.1	-	2	1247	c.561C>T	c.(559-561)CCC>CCT	p.P187P		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	187	Interaction with NOSIP (By similarity).|PIN (nNOS-inhibiting protein) binding.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTTTCTTCGCGGGGTCCTGGC	0.632													65	123					0	0	1	0	0
TAOK3	51347	broad.mit.edu	37	12	118598005	118598005	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:118598005G>A	uc001twx.2	-	19	2593	c.2298C>T	c.(2296-2298)GCC>GCT	p.A766A	TAOK3_uc001twv.2_Silent_p.A306A|TAOK3_uc001tww.2_Silent_p.A596A|TAOK3_uc001twy.3_Silent_p.A766A	NM_016281	NP_057365	Q9H2K8	TAOK3_HUMAN	TAO kinase 3	766	Potential.				MAPKKK cascade|negative regulation of JNK cascade|positive regulation of JNK cascade|protein autophosphorylation	mitochondrion|plasma membrane	ATP binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CTGCCAAAATGGCAAGTTTTC	0.418													48	106					0	0	1	0	0
PRKAB1	5564	broad.mit.edu	37	12	120114362	120114362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:120114362G>A	uc009zwu.2	+	6	656	c.553G>A	c.(553-555)GGA>AGA	p.G185R	PRKAB1_uc001txg.2_Missense_Mutation_p.G185R	NM_006253	NP_006244	Q9Y478	AAKB1_HUMAN	AMP-activated protein kinase beta 1	185					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid oxidation	cytosol					0	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.166)	Adenosine monophosphate(DB00131)|Metformin(DB00331)	TTCTCCCCCAGGACCCTACCA	0.522													52	93					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120572391	120572391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:120572391G>A	uc001txo.2	-	52	7161	c.7148C>T	c.(7147-7149)CCC>CTC	p.P2383L		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2383					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGTGAAGAGGGGGTCCACCTT	0.627													52	68					0	0	1	0	0
KDM2B	84678	broad.mit.edu	37	12	121868128	121868129	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:121868128_121868129CC>TT	uc001uat.2	-	23	4077_4078	c.3973_3974GG>AA	c.(3973-3975)GGG>AAG	p.G1325K	KDM2B_uc001uaq.2_Missense_Mutation_p.G765K|KDM2B_uc010szy.1_Missense_Mutation_p.G765K|KDM2B_uc001uar.2_Missense_Mutation_p.G916K|KDM2B_uc001uas.2_Intron|KDM2B_uc001uau.2_3'UTR|RNF34_uc001uam.1_Missense_Mutation_p.P452L|KDM2B_uc001uao.2_Missense_Mutation_p.G573K|KDM2B_uc010szx.1_Missense_Mutation_p.G573K|KDM2B_uc001uap.2_Intron	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1325	LRR 7.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						TTCTACTTGCCCAAACTGGACA	0.465													33	107					0	0	1	0	0
KNTC1	9735	broad.mit.edu	37	12	123073312	123073312	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:123073312A>T	uc001ucv.2	+	40	4111	c.3948A>T	c.(3946-3948)AAA>AAT	p.K1316N	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	1316					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		TGGAATTGAAAGAAAAAGCTG	0.274													4	4					0	0	1	0	0
SBNO1	55206	broad.mit.edu	37	12	123834984	123834984	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:123834984A>C	uc010tap.1	-	1	5	c.5T>G	c.(4-6)GTG>GGG	p.V2G	SBNO1_uc010tao.1_Missense_Mutation_p.V2G|SBNO1_uc010taq.1_5'UTR|SBNO1_uc001uet.2_Missense_Mutation_p.V2G|SBNO1_uc001ueu.2_Missense_Mutation_p.V2G|SBNO1_uc001uev.2_Missense_Mutation_p.V2G|SBNO1_uc009zxy.1_Missense_Mutation_p.V2G	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	2							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		CCCTGGCTCCACCATCTTTAA	0.363													103	189					0	0	1	0	0
EIF2B1	1967	broad.mit.edu	37	12	124114824	124114825	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:124114824_124114825GG>AA	uc001ufm.2	-	4	403_404	c.260_261CC>TT	c.(259-261)TCC>TTT	p.S87F	EIF2B1_uc001ufn.2_Missense_Mutation_p.S87F|EIF2B1_uc010tat.1_Missense_Mutation_p.S87F	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,	87					cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		TTTTACATTTGGAGTAATCCTA	0.406													47	95					0	0	1	0	0
TCTN2	79867	broad.mit.edu	37	12	124181719	124181719	+	Silent	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:124181719G>C	uc001ufp.2	+	13	1607	c.1479G>C	c.(1477-1479)GGG>GGC	p.G493G	TCTN2_uc009zya.2_Silent_p.G492G	NM_024809	NP_079085	Q96GX1	TECT2_HUMAN	tectonic family member 2 isoform 1	493	Extracellular (Potential).				cilium assembly|smoothened signaling pathway	integral to membrane				ovary(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000163)|Epithelial(86;0.000502)|all cancers(50;0.00451)		TAGAAGTCGGGATTAATGAAA	0.363													47	115					0	0	1	0	0
DNAH10	196385	broad.mit.edu	37	12	124311422	124311422	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:124311422G>A	uc001uft.3	+	24	4039	c.4014G>A	c.(4012-4014)TTG>TTA	p.L1338L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1338	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TTCTTGACTTGAAAAACGAGG	0.423													11	16					0	0	1	0	0
TMEM132B	114795	broad.mit.edu	37	12	126138444	126138444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:126138444G>A	uc001uhe.1	+	9	2433	c.2425G>A	c.(2425-2427)GAA>AAA	p.E809K	TMEM132B_uc001uhf.1_Missense_Mutation_p.E321K	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	809	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CATAAATCGGGAATATAAAGA	0.488													29	56					0	0	1	0	0
RIMBP2	23504	broad.mit.edu	37	12	130927093	130927093	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:130927093G>A	uc001uil.2	-	8	917	c.753C>T	c.(751-753)TTC>TTT	p.F251F	RIMBP2_uc001uim.2_Silent_p.F159F|RIMBP2_uc001uin.1_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	251						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		AATGGTTGATGAAGTTCTGAT	0.607													51	90					0	0	1	0	0
GPR133	283383	broad.mit.edu	37	12	131620698	131620698	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:131620698A>G	uc001uit.3	+	22	2943	c.2384A>G	c.(2383-2385)AAC>AGC	p.N795S	GPR133_uc010tbm.1_Missense_Mutation_p.N827S|GPR133_uc009zyo.2_Missense_Mutation_p.N77S|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	795	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		GCCACGCTCAACTCCCTGCAG	0.652													13	31					0	0	1	0	0
ULK1	8408	broad.mit.edu	37	12	132398374	132398374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:132398374C>T	uc001uje.2	+	15	1508	c.1240C>T	c.(1240-1242)CCC>TCC	p.P414S		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	414	Interaction with GABARAP and GABARAPL2.				autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CTCCCCCAGTCCCTCAGGGTA	0.692													17	39					0	0	1	0	0
GALNT9	50614	broad.mit.edu	37	12	132683752	132683752	+	Silent	SNP	C	T	T	rs61745417		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:132683752C>T	uc001ukc.3	-	9	1580	c.1464G>A	c.(1462-1464)GCG>GCA	p.A488A	GALNT9_uc009zyr.2_Silent_p.A262A|GALNT9_uc001ukb.2_Silent_p.A345A|GALNT9_uc001uka.2_Silent_p.A122A	NM_001122636	NP_001116108	Q9HCQ5	GALT9_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	488	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.241)		OV - Ovarian serous cystadenocarcinoma(86;7.49e-08)|Epithelial(86;3.55e-07)|all cancers(50;2.09e-05)		GGTAGAGGATCGCCCGGTCGC	0.647													40	51					0	0	1	0	0
PGAM5	192111	broad.mit.edu	37	12	133294599	133294599	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:133294599C>T	uc009zyv.2	+	5	639	c.612C>T	c.(610-612)ATC>ATT	p.I204I	PGAM5_uc010tbr.1_RNA|PGAM5_uc001uku.2_Silent_p.I204I	NM_138575	NP_612642	Q96HS1	PGAM5_HUMAN	phosphoglycerate mutase family member 5	204						integral to membrane|mitochondrial outer membrane	phosphoprotein phosphatase activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.89e-08)|Epithelial(86;1.14e-07)|all cancers(50;3.57e-06)		GAGCCCGGATCGAGGCCGCCT	0.622													31	81					0	0	1	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19625494	19625494	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:19625494G>A	uc001umb.1	-	8		c.3029C>T				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						TCTTGGGGTGGGACAGGAAGG	0.552													7	4					0	0	1	0	0
SKA3	221150	broad.mit.edu	37	13	21734066	21734066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:21734066G>A	uc001unt.2	-	6	984	c.890C>T	c.(889-891)CCA>CTA	p.P297L	SKA3_uc001unv.2_Missense_Mutation_p.P215L|SKA3_uc001unu.2_Missense_Mutation_p.P297L	NM_145061	NP_659498	Q8IX90	SKA3_HUMAN	SKA3	297					cell division|chromosome segregation|mitosis|regulation of microtubule polymerization or depolymerization	condensed chromosome outer kinetochore|cytoplasm|spindle microtubule	protein binding				0						CTTTGTAGATGGAATTTTCAA	0.358													70	61					0	0	1	0	0
FGF9	2254	broad.mit.edu	37	13	22246207	22246207	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:22246207G>A	uc001uog.2	+	1	993	c.156G>A	c.(154-156)ACG>ACA	p.T52T		NM_002010	NP_002001	P31371	FGF9_HUMAN	fibroblast growth factor 9 precursor	52					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|male gonad development|positive regulation of cell division	extracellular space	growth factor activity|heparin binding				0		all_cancers(29;1.23e-20)|all_epithelial(30;9.83e-19)|all_lung(29;9.64e-17)|Lung SC(185;0.0262)|Breast(139;0.106)		all cancers(112;3.92e-05)|Epithelial(112;0.000166)|OV - Ovarian serous cystadenocarcinoma(117;0.00314)|Lung(94;0.163)		CCGCAGTCACGGACTTGGATC	0.557													56	28					0	0	1	0	0
FRY	10129	broad.mit.edu	37	13	32798488	32798488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:32798488C>T	uc001utx.2	+	37	5378	c.4882C>T	c.(4882-4884)CCG>TCG	p.P1628S	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1628					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		TGACTATCTCCCGGAGACCAT	0.562													30	17					0	0	1	0	0
SMAD9	4093	broad.mit.edu	37	13	37447020	37447020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:37447020C>T	uc001uvw.2	-	3	788	c.445G>A	c.(445-447)GAA>AAA	p.E149K	SMAD9_uc001uvx.2_Missense_Mutation_p.E149K|SMAD9_uc010tep.1_5'UTR	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	149					BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GGGTTATATTCACTGTGTCTT	0.522													31	29					0	0	1	0	0
COG6	57511	broad.mit.edu	37	13	40268836	40268836	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:40268836C>T	uc001uxh.2	+	12	1240	c.1140C>T	c.(1138-1140)CTC>CTT	p.L380L	COG6_uc001uxi.2_Silent_p.L328L|COG6_uc010acb.2_Silent_p.L380L	NM_020751	NP_065802	Q9Y2V7	COG6_HUMAN	component of oligomeric golgi complex 6 isoform	380					protein transport	Golgi membrane|Golgi transport complex				kidney(1)|skin(1)	2		Lung NSC(96;0.000124)|Breast(139;0.0199)|Prostate(109;0.0233)|Lung SC(185;0.0367)		all cancers(112;6.03e-09)|Epithelial(112;7e-07)|OV - Ovarian serous cystadenocarcinoma(117;0.00015)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.0168)		TTTCTAATCTCCTCAAATTTT	0.313													28	22					0	0	1	0	0
ELF1	1997	broad.mit.edu	37	13	41523980	41523981	+	Missense_Mutation	DNP	GG	AA	AA	rs138109960	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:41523980_41523981GG>AA	uc001uxs.2	-	5	863_864	c.490_491CC>TT	c.(490-492)CCG>TTG	p.P164L	ELF1_uc010tfc.1_Missense_Mutation_p.P140L|ELF1_uc010acd.2_Missense_Mutation_p.P57L	NM_172373	NP_758961	P32519	ELF1_HUMAN	E74-like factor 1 (ets domain transcription	164					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung NSC(96;8.3e-05)|Prostate(109;0.0233)|Breast(139;0.0296)|Lung SC(185;0.0367)		all cancers(112;1.87e-08)|Epithelial(112;8.45e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000202)|GBM - Glioblastoma multiforme(144;0.00266)|BRCA - Breast invasive adenocarcinoma(63;0.072)		TGAGGCTCCCGGTGAGTCTGCA	0.465													63	50					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42275549	42275549	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:42275549A>C	uc001uyj.2	-	28	3413	c.3343T>G	c.(3343-3345)TGT>GGT	p.C1115G		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1115						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		GCAATGTCACAGATTATATTA	0.328													46	26					0	0	1	0	0
AKAP11	11215	broad.mit.edu	37	13	42874187	42874187	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:42874187C>T	uc001uys.1	+	8	1480	c.1305C>T	c.(1303-1305)CGC>CGT	p.R435R		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	435					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		ATTCTCCTCGCCCAGTGAAGG	0.468													116	60					0	0	1	0	0
RB1	5925	broad.mit.edu	37	13	48923137	48923137	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:48923137G>A	uc001vcb.2	+	6	751	c.585G>A	c.(583-585)TGG>TGA	p.W195*	RB1_uc010acs.1_Intron	NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1	195					androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(5)|p.W195fs*8(1)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AAGTTTCTTGGATCACATTTT	0.264		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			40	29					0	0	1	0	0
FNDC3A	22862	broad.mit.edu	37	13	49760215	49760215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:49760215C>T	uc001vcm.2	+	15	2038	c.1733C>T	c.(1732-1734)TCA>TTA	p.S578L	FNDC3A_uc001vcn.2_Missense_Mutation_p.S578L|FNDC3A_uc001vco.2_RNA|FNDC3A_uc001vcp.1_Missense_Mutation_p.S504L|FNDC3A_uc001vcq.2_Missense_Mutation_p.S522L	NM_001079673	NP_001073141	Q9Y2H6	FND3A_HUMAN	fibronectin type III domain containing 3A	578	Fibronectin type-III 4.					Golgi membrane|integral to membrane				lung(2)	2		all_lung(13;7.44e-08)|Lung NSC(96;4.08e-06)|Breast(56;0.000111)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|Lung SC(185;0.187)|all_neural(104;0.19)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;2.94e-09)		AAGATACATTCACACAGTTTT	0.299													31	24					0	0	1	0	0
MYCBP2	23077	broad.mit.edu	37	13	77754364	77754364	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:77754364C>T	uc001vkf.2	-	35	5008	c.4917G>A	c.(4915-4917)CTG>CTA	p.L1639L	MYCBP2_uc010aev.2_Silent_p.L1043L	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	1639					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTTCTCTCCTCAGGCTGTTCC	0.493													64	53					0	0	1	0	0
SLAIN1	122060	broad.mit.edu	37	13	78320910	78320910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:78320910C>T	uc010thy.1	+	4	729	c.686C>T	c.(685-687)CCT>CTT	p.P229L	SLAIN1_uc001vkk.1_Missense_Mutation_p.P152L|SLAIN1_uc001vkl.1_Missense_Mutation_p.P108L|SLAIN1_uc010thz.1_Missense_Mutation_p.P107L|SLAIN1_uc010aex.1_Intron|SLAIN1_uc010aey.1_Intron|SLAIN1_uc001vkm.2_Missense_Mutation_p.P108L	NM_144595	NP_653196	Q8ND83	SLAI1_HUMAN	SLAIN motif family, member 1 B	371										ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0853)		CAGTATTTTCCTTCAAATAAT	0.453													51	24					0	0	1	0	0
DZIP1	22873	broad.mit.edu	37	13	96238358	96238358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:96238358C>T	uc001vmk.2	-	21	3103	c.2251G>A	c.(2251-2253)GAA>AAA	p.E751K	DZIP1_uc001vmi.2_5'UTR|DZIP1_uc001vmj.2_Missense_Mutation_p.E227K|DZIP1_uc001vml.2_Missense_Mutation_p.E732K|DZIP1_uc001vmm.2_5'Flank	NM_198968	NP_945319	Q86YF9	DZIP1_HUMAN	DAZ interacting protein 1 isoform 2	751					germ cell development|multicellular organismal development|spermatogenesis	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	all_neural(89;0.0878)|Breast(111;0.148)|Medulloblastoma(90;0.163)		BRCA - Breast invasive adenocarcinoma(86;0.141)			AACATCTTTTCAACTTTTTCA	0.308													16	5					0	0	1	0	0
FARP1	10160	broad.mit.edu	37	13	99083332	99083332	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:99083332C>T	uc001vnj.2	+	18	2277	c.1941C>T	c.(1939-1941)GCC>GCT	p.A647A	FARP1_uc001vnh.2_Silent_p.A647A	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	647	DH.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			ACAGCGAGGCCTTGGAGGCCC	0.587													36	17					0	0	1	0	0
NALCN	259232	broad.mit.edu	37	13	101726006	101726006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:101726006C>T	uc001vox.1	-	37	4316	c.4127G>A	c.(4126-4128)GGA>GAA	p.G1376E		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1376	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					AATAGCTTTTCCAGCCGAAGA	0.358													30	19					0	0	1	0	0
FAM70B	348013	broad.mit.edu	37	13	114498132	114498132	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:114498132G>A	uc001vuh.2	+	4	291	c.264G>A	c.(262-264)GCG>GCA	p.A88A		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	88	Helical; (Potential).					integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			TGGTGGCAGCGATCGTGTTTA	0.542													30	25					0	0	1	0	0
RASA3	22821	broad.mit.edu	37	13	114793396	114793396	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr13:114793396C>A	uc001vui.2	-	6	588	c.457G>T	c.(457-459)GAG>TAG	p.E153*	RASA3_uc010tkk.1_Nonsense_Mutation_p.E121*|RASA3_uc001vuj.2_5'UTR|RASA3_uc010tkl.1_RNA|RASA3_uc010aha.1_RNA	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	153	C2 2.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			CCCTGGCACTCGACGATGCTG	0.627													25	19					9.22233e-05	9.26002e-05	1	1	0
POTEG	404785	broad.mit.edu	37	14	19553749	19553749	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:19553749G>A	uc001vuz.1	+	1	385	c.333G>A	c.(331-333)GGG>GGA	p.G111G	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	111										ovary(1)	1						GCTGCAGGGGGAGCGGCAAGA	0.597													72	700					0	0	1	0	0
OR4N2	390429	broad.mit.edu	37	14	20295862	20295862	+	Silent	SNP	C	T	T	rs139052676	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:20295862C>T	uc010tkv.1	+	1	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGTGGACTTCCTCTCTGCGA	0.527													72	200					0	0	1	0	0
OR4K5	79317	broad.mit.edu	37	14	20389080	20389080	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:20389080C>T	uc010tkw.1	+	1	315	c.315C>T	c.(313-315)CAC>CAT	p.H105H		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTTTATTCACCTTTTTACTG	0.433													12	219					0	0	1	0	0
OR4K1	79544	broad.mit.edu	37	14	20404428	20404428	+	Silent	SNP	G	A	A	rs149331677	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:20404428G>A	uc001vwj.1	+	1	603	c.603G>A	c.(601-603)ACG>ACA	p.T201T		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TGACCCTAACGAACAGTGGCC	0.448													35	56					0	0	1	0	0
OR4K13	390433	broad.mit.edu	37	14	20502478	20502478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:20502478G>A	uc010tkz.1	-	1	440	c.440C>T	c.(439-441)TCC>TTC	p.S147F		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TGCATAGGAGGATAACAGTAG	0.463													66	49					0	0	1	0	0
OR4K13	390433	broad.mit.edu	37	14	20502786	20502786	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:20502786G>A	uc010tkz.1	-	1	132	c.132C>T	c.(130-132)CTC>CTT	p.L44L		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		TCACCAAGATGAGCAGGTTTC	0.403													3	27					0	0	1	0	0
TEP1	7011	broad.mit.edu	37	14	20848394	20848394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:20848394C>T	uc001vxe.2	-	34	5043	c.5003G>A	c.(5002-5004)AGC>AAC	p.S1668N	TEP1_uc010ahk.2_Missense_Mutation_p.S1011N|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.S1560N|TEP1_uc010tlh.1_Missense_Mutation_p.S6N	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1668					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AAGGTCTTACCTTTGCTGATT	0.517													78	69					0	0	1	0	0
RNASE11	122651	broad.mit.edu	37	14	21052426	21052426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21052426C>T	uc010ahv.2	-	2	393	c.208G>A	c.(208-210)GAT>AAT	p.D70N	RNASE11_uc010ahx.2_Missense_Mutation_p.D70N|RNASE11_uc010ahw.2_Missense_Mutation_p.D70N|RNASE11_uc001vxs.2_Missense_Mutation_p.D70N	NM_145250	NP_660293	Q8TAA1	RNS11_HUMAN	ribonuclease, RNase A family, 11 (non-active)	70						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(3)	3	all_cancers(95;0.00238)	all_lung(585;0.235)	Epithelial(56;1.85e-06)|all cancers(55;1.46e-05)	GBM - Glioblastoma multiforme(265;0.0139)		GAAGACATATCATCCTTGGAC	0.388													91	93					0	0	1	0	0
OR6S1	341799	broad.mit.edu	37	14	21109737	21109737	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21109737G>A	uc001vxv.1	-	1	114	c.114C>T	c.(112-114)CTC>CTT	p.L38L		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		TCAGATTCAGGAGATAGACAA	0.483													44	57					0	0	1	0	0
RNASE3	6037	broad.mit.edu	37	14	21360273	21360273	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21360273C>A	uc001vyj.2	+	2	482	c.428C>A	c.(427-429)CCA>CAA	p.P143Q		NM_002935	NP_002926	P12724	ECP_HUMAN	ribonuclease, RNase A family, 3 (eosinophil	143					defense response to bacterium|RNA catabolic process	extracellular region|soluble fraction	nucleic acid binding|pancreatic ribonuclease activity				0	all_cancers(95;0.00453)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)	Pranlukast(DB01411)	AACAGAGATCCACGGGATTCT	0.483													4	84					0.00909568	0.00912353	1	1	0
FLJ10357	55701	broad.mit.edu	37	14	21544721	21544722	+	Splice_Site	DNP	GG	AA	AA	rs11620774		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21544721_21544722GG>AA	uc001vzp.2	+	7	1866	c.1837_splice	c.e7-1	p.D613_splice	FLJ10357_uc001vzo.1_Splice_Site|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Splice_Site	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701						regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		TCTGCCCTTAGGACTCAGGAGA	0.515													65	69					0	0	1	0	0
RPGRIP1	57096	broad.mit.edu	37	14	21793453	21793453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21793453C>T	uc001wag.2	+	15	2278	c.2278C>T	c.(2278-2280)CCC>TCC	p.P760S	RPGRIP1_uc001wah.2_Missense_Mutation_p.P402S|RPGRIP1_uc001wai.2_Intron|RPGRIP1_uc001wak.2_Missense_Mutation_p.P235S|RPGRIP1_uc010aim.2_Missense_Mutation_p.P143S|RPGRIP1_uc001wal.2_Missense_Mutation_p.P119S|RPGRIP1_uc001wam.2_Missense_Mutation_p.P77S	NM_020366	NP_065099	Q96KN7	RPGR1_HUMAN	retinitis pigmentosa GTPase regulator	760					response to stimulus|visual perception	cilium				ovary(4)|breast(2)|pancreas(1)	7	all_cancers(95;0.0017)	all_cancers(140;0.0973)	Epithelial(56;6.24e-07)|all cancers(55;6.56e-06)	GBM - Glioblastoma multiforme(265;0.00888)		CCCCATAAAACCCAGCCTACA	0.527													9	12					0	0	1	0	0
SUPT16H	11198	broad.mit.edu	37	14	21834651	21834651	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21834651G>A	uc001wao.2	-	8	1332	c.993C>T	c.(991-993)GAC>GAT	p.D331D		NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	331					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		TTTTAACCACGTCCATGACAG	0.353													17	162					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21873897	21873897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21873897G>A	uc001was.1	-	15	2291	c.2197C>T	c.(2197-2199)CTC>TTC	p.L733F	CHD8_uc001war.1_Missense_Mutation_p.L629F|CHD8_uc001wav.1_Missense_Mutation_p.L175F	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1012					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		TCTGTCTTGAGATCCCCAAAG	0.413													13	183					0	0	1	0	0
TOX4	9878	broad.mit.edu	37	14	21960511	21960511	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21960511T>C	uc001waz.2	+	6	970	c.867T>C	c.(865-867)GCT>GCC	p.A289A	TOX4_uc001way.2_Silent_p.A159A|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Silent_p.A266A|TOX4_uc010tlv.1_Silent_p.A159A	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	289	HMG box.					chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		CACTGGCTGCTTACAAAGACA	0.363													59	56					0	0	1	0	0
SALL2	6297	broad.mit.edu	37	14	21992561	21992561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:21992561G>A	uc001wbe.2	-	2	1583	c.1301C>T	c.(1300-1302)CCA>CTA	p.P434L	SALL2_uc010tly.1_Missense_Mutation_p.P432L|SALL2_uc010tlz.1_Missense_Mutation_p.P297L|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.P299L|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	434							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		TACTGGGTGTGGGTTCATCTG	0.527													37	30					0	0	1	0	0
DAD1	1603	broad.mit.edu	37	14	23058021	23058021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:23058021C>T	uc001wgl.2	-	1	123	c.43G>A	c.(43-45)GAG>AAG	p.E15K		NM_001344	NP_001335	P61803	DAD1_HUMAN	defender against cell death 1	15					anti-apoptosis|apoptosis|post-translational protein modification	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity			ovary(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0156)		CTCAAGTACTCTTCTAAGAAC	0.572													7	61					0	0	1	0	0
SLC7A7	9056	broad.mit.edu	37	14	23282439	23282439	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:23282439C>A	uc001wgr.3	-	2	307	c.169G>T	c.(169-171)GTT>TTT	p.V57F	SLC7A7_uc001wgs.3_Missense_Mutation_p.V57F|SLC7A7_uc001wgt.3_Missense_Mutation_p.V57F|SLC7A7_uc001wgu.3_Missense_Mutation_p.V57F|SLC7A7_uc001wgv.3_Missense_Mutation_p.V57F	NM_003982	NP_003973	Q9UM01	YLAT1_HUMAN	solute carrier family 7 member 7	57	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	basolateral plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity			ovary(1)|breast(1)	2	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.00741)		TTGGGGGAAACAAAGATGCCC	0.577													9	110					0.0809354	0.0811004	1	1	0
LRP10	26020	broad.mit.edu	37	14	23345369	23345369	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:23345369C>T	uc001whd.2	+	5	1765	c.1212C>T	c.(1210-1212)TTC>TTT	p.F404F	LRP10_uc001whe.2_Silent_p.F280F	NM_014045	NP_054764	Q7Z4F1	LRP10_HUMAN	low density lipoprotein receptor-related protein	404	LDL-receptor class A 4.|Extracellular (Potential).				endocytosis	coated pit|integral to membrane				central_nervous_system(1)	1	all_cancers(95;4.69e-05)			GBM - Glioblastoma multiforme(265;0.00549)		CTGGCAATTTCCGATGCCGGG	0.592													73	55					0	0	1	0	0
BCL2L2	599	broad.mit.edu	37	14	23778028	23778028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:23778028G>A	uc001wjg.3	+	4	624	c.436G>A	c.(436-438)GAG>AAG	p.E146K	PABPN1_uc001wjh.3_Intron|BCL2L2_uc001wji.3_Missense_Mutation_p.E146K	NM_004050	NP_004041	Q92843	B2CL2_HUMAN	BCL2-like 2 protein	146	BH2.				anti-apoptosis|apoptosis|spermatogenesis	mitochondrial membrane	protein binding			central_nervous_system(1)	1	all_cancers(95;5.54e-06)			GBM - Glioblastoma multiforme(265;0.00654)		CCCACAGGCGGAGTTCACAGC	0.517													42	37					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23858697	23858697	+	Missense_Mutation	SNP	C	T	T	rs34935550	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:23858697C>T	uc001wjv.2	-	28	3950	c.3883G>A	c.(3883-3885)GAA>AAA	p.E1295K	uc010tnn.1_5'Flank|MIR208A_hsa-mir-208a|MI0000251_5'Flank	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1295	Potential.		E -> Q.		adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GCCTCCTTTTCCTCTAGCTGC	0.587													41	42					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24528363	24528363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24528363C>T	uc001wlj.2	+	20	1748	c.1591C>T	c.(1591-1593)CAC>TAC	p.H531Y	LRRC16B_uc001wlk.2_5'Flank	NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	531										ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GGAGATCCTCCACAAGCTGGT	0.642													6	3					0	0	1	0	0
DCAF11	80344	broad.mit.edu	37	14	24586911	24586911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24586911C>T	uc001wlv.2	+	5	726	c.446C>T	c.(445-447)TCC>TTC	p.S149F	NRL_uc001wlq.2_5'Flank|DCAF11_uc001wlw.2_Missense_Mutation_p.S149F|DCAF11_uc001wlz.2_Intron|DCAF11_uc001wly.2_Missense_Mutation_p.S105F|DCAF11_uc001wme.2_Intron|DCAF11_uc010tny.1_Missense_Mutation_p.S16F|DCAF11_uc001wmd.2_Missense_Mutation_p.S149F|DCAF11_uc001wmc.2_Intron|DCAF11_uc001wmb.3_Missense_Mutation_p.S123F|DCAF11_uc001wma.3_Missense_Mutation_p.S149F	NM_001163484	NP_001156956	Q8TEB1	DCA11_HUMAN	DDB1 and CUL4 associated factor 11 isoform 1	149						CUL4 RING ubiquitin ligase complex	protein binding				0						GGAAGCTTCTCCCTTGGAGAA	0.498													39	23					0	0	1	0	0
RNF31	55072	broad.mit.edu	37	14	24619980	24619980	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24619980C>T	uc001wmn.1	+	8	1620	c.1371C>T	c.(1369-1371)CCC>CCT	p.P457P	RNF31_uc001wml.1_Silent_p.P306P|RNF31_uc001wmm.1_Intron|RNF31_uc010alg.1_Silent_p.P272P|RNF31_uc001wmo.1_5'Flank|RNF31_uc001wmp.2_5'Flank	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	457	Polyubiquitin-binding.				CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		AGGGACCCCCCAAGCCTGGGC	0.627													8	95					0	0	1	0	0
RNF31	55072	broad.mit.edu	37	14	24627402	24627402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24627402C>T	uc001wmn.1	+	18	3142	c.2893C>T	c.(2893-2895)CCT>TCT	p.P965S	RNF31_uc001wml.1_Missense_Mutation_p.P814S|RNF31_uc010alg.1_Missense_Mutation_p.P724S|RNF31_uc001wmo.1_Missense_Mutation_p.P432S|RNF31_uc001wmp.2_RNA|RNF31_uc010alh.1_Missense_Mutation_p.P149S	NM_017999	NP_060469	Q96EP0	RNF31_HUMAN	ring finger protein 31	965					CD40 signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein linear polyubiquitination|T cell receptor signaling pathway	CD40 receptor complex|internal side of plasma membrane|LUBAC complex	ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(265;0.00861)		CCGGGCAGTCCCTGGAGGTGA	0.488													5	90					0	0	1	0	0
REC8	9985	broad.mit.edu	37	14	24647299	24647299	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24647299G>A	uc001wmr.2	+	14	1294	c.867G>A	c.(865-867)AGG>AGA	p.R289R	REC8_uc001wms.2_Silent_p.R289R	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	289	Pro-rich.|Glu-rich.			R -> G (in Ref. 2; BAF83880).	mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		CTCAACAGAGGAGGCCCCCAG	0.617													5	79					0	0	1	0	0
TGM1	7051	broad.mit.edu	37	14	24718746	24718746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24718746C>T	uc001wod.2	-	15	2351	c.2227G>A	c.(2227-2229)GAC>AAC	p.D743N	TGM1_uc010tog.1_Missense_Mutation_p.D301N	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	743					cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	CCTCCAATGTCCCTGTGGGCA	0.597													12	10					0	0	1	0	0
NFATC4	4776	broad.mit.edu	37	14	24845926	24845926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24845926C>T	uc001wpc.2	+	9	2804	c.2483C>T	c.(2482-2484)TCC>TTC	p.S828F	NFATC4_uc010tok.1_Missense_Mutation_p.S891F|NFATC4_uc010tol.1_Missense_Mutation_p.S891F|NFATC4_uc010alr.2_Intron|NFATC4_uc010tom.1_Missense_Mutation_p.S841F|NFATC4_uc010ton.1_Missense_Mutation_p.S841F|NFATC4_uc010too.1_Intron|NFATC4_uc010alt.2_Missense_Mutation_p.S860F|NFATC4_uc010top.1_Missense_Mutation_p.S860F|NFATC4_uc010toq.1_Intron|NFATC4_uc010tor.1_Intron|NFATC4_uc010tos.1_Missense_Mutation_p.S758F|NFATC4_uc010tot.1_Missense_Mutation_p.S816F|NFATC4_uc010tou.1_Missense_Mutation_p.S758F|NFATC4_uc010tov.1_Intron|NFATC4_uc010tow.1_Intron|NFATC4_uc010alv.2_Missense_Mutation_p.S816F|NFATC4_uc010tox.1_Missense_Mutation_p.S758F|NFATC4_uc001wpd.2_Missense_Mutation_p.S363F|NFATC4_uc010toy.1_Intron|NFATC4_uc010toz.1_Missense_Mutation_p.S363F|NFATC4_uc010tpa.1_Missense_Mutation_p.S116F|NFATC4_uc010tpb.1_Missense_Mutation_p.S116F	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	828	Pro-rich.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CCCTTCCCTTCCCAGAGTGAT	0.642													13	165					0	0	1	0	0
NYNRIN	57523	broad.mit.edu	37	14	24885171	24885171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:24885171C>T	uc001wpf.3	+	9	4534	c.4216C>T	c.(4216-4218)CCT>TCT	p.P1406S		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1406					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						GGCTCCACTCCCTCACCCAAG	0.582													47	52					0	0	1	0	0
FOXG1	2290	broad.mit.edu	37	14	29237430	29237430	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:29237430C>T	uc001wqe.2	+	1	1144	c.945C>T	c.(943-945)TCC>TCT	p.S315S		NM_005249	NP_005240	P55316	FOXG1_HUMAN	forkhead box G1	315				RAGSLYWPMSPFLSLHHPR -> APAPSTGPCRPSCPCTTP (in Ref. 1; CAA52240 and 2; CAA55038).	axon midline choice point recognition|central nervous system neuron development|dorsal/ventral pattern formation|embryo development ending in birth or egg hatching|hindbrain development|inner ear morphogenesis|negative regulation of neuron differentiation|negative regulation of transcription, DNA-dependent|nonmotile primary cilium assembly|nose development|positive regulation of cell cycle|positive regulation of neuroblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of mitotic cell cycle|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)|lung(2)	4			LUAD - Lung adenocarcinoma(48;0.011)|Lung(238;0.0575)	GBM - Glioblastoma multiforme(265;0.00413)		CCTTCCTGTCCCTGCACCACC	0.662													87	72					0	0	1	0	0
HECTD1	25831	broad.mit.edu	37	14	31604173	31604173	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:31604173A>G	uc001wrc.1	-	22	3972	c.3483T>C	c.(3481-3483)TCT>TCC	p.S1161S	HECTD1_uc001wrd.1_Silent_p.S676S	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	1161					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		TTCTCAGTGCAGACCTTCCAT	0.443													55	42					0	0	1	0	0
AKAP6	9472	broad.mit.edu	37	14	33292869	33292869	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:33292869G>A	uc001wrq.2	+	13	6020	c.5850G>A	c.(5848-5850)AAG>AAA	p.K1950K		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1950					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		CTGCTGGCAAGGAATTTGTTT	0.383													35	24					0	0	1	0	0
NPAS3	64067	broad.mit.edu	37	14	34269129	34269129	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:34269129A>G	uc001wru.2	+	12	1680	c.1616A>G	c.(1615-1617)AAC>AGC	p.N539S	NPAS3_uc001wrs.2_Missense_Mutation_p.N526S|NPAS3_uc001wrt.2_Missense_Mutation_p.N507S|NPAS3_uc001wrv.2_Missense_Mutation_p.N509S	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	539					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		GACTTTGAGAACCCCAAGGCG	0.637													10	26					0	0	1	0	0
MIA2	117153	broad.mit.edu	37	14	39717191	39717191	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:39717191G>A	uc001wux.2	+	4	1607	c.1413G>A	c.(1411-1413)CAG>CAA	p.Q471Q	MIA2_uc010amy.1_Silent_p.Q402Q	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	471						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		GGAACTTCCAGAACATTCCAA	0.313													4	56					0	0	1	0	0
MDGA2	161357	broad.mit.edu	37	14	47504474	47504474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:47504474G>A	uc001wwj.3	-	8	1548	c.1352C>T	c.(1351-1353)TCA>TTA	p.S451L	MDGA2_uc001wwi.3_Missense_Mutation_p.S222L|MDGA2_uc010ani.2_Missense_Mutation_p.S11L	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	451	Ig-like 5.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						GACCAATGGTGATTTTTCCTG	0.378													32	33					0	0	1	0	0
TRIM9	114088	broad.mit.edu	37	14	51467517	51467517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:51467517C>T	uc001wyx.3	-	6	2113	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	TRIM9_uc001wyy.2_Missense_Mutation_p.E446K|TRIM9_uc001wyz.3_Missense_Mutation_p.E450K	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	450	Fibronectin type-III.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					GTACAACATTCCTCCAGCTGT	0.498													30	30					0	0	1	0	0
C14orf37	145407	broad.mit.edu	37	14	58604911	58604911	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:58604911G>A	uc001xdc.2	-	2	1277	c.1166C>T	c.(1165-1167)TCA>TTA	p.S389L	C14orf37_uc010tro.1_Missense_Mutation_p.S427L|C14orf37_uc001xdd.2_Missense_Mutation_p.S389L|C14orf37_uc001xde.2_Missense_Mutation_p.S389L	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	389	Extracellular (Potential).					integral to membrane	binding				0						GAAAGCAGGTGATCTCTCATT	0.532													7	123					0	0	1	0	0
SIX4	51804	broad.mit.edu	37	14	61180921	61180921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:61180921C>T	uc001xfc.2	-	3	1550	c.1550G>A	c.(1549-1551)GGT>GAT	p.G517D		NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	517						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		TGAGATATTACCTAAAAAAAA	0.378													17	16					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62463260	62463260	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:62463260G>T	uc001xfu.1	+	1	720	c.523G>T	c.(523-525)GTC>TTC	p.V175F	SYT16_uc010tsd.1_Missense_Mutation_p.V175F	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	175				V -> I (in Ref. 1; BAC76810).						central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		AAAAAAGCAAGGTAAGCTAGC	0.383													50	38					2.74695e-27	2.80791e-27	1	1	0
KCNH5	27133	broad.mit.edu	37	14	63269224	63269224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:63269224G>A	uc001xfx.2	-	9	1696	c.1645C>T	c.(1645-1647)CCT>TCT	p.P549S	KCNH5_uc001xfy.2_Missense_Mutation_p.P549S|KCNH5_uc001xfz.1_Missense_Mutation_p.P491S	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	549	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CGAAAAGCAGGATGTTCATTA	0.493													33	30					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64593101	64593101	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:64593101C>T	uc001xgm.2	+	72	13841	c.13611C>T	c.(13609-13611)TTC>TTT	p.F4537F	SYNE2_uc001xgl.2_Silent_p.F4537F|SYNE2_uc010apy.2_Silent_p.F922F|SYNE2_uc010apz.1_Silent_p.F429F	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	4537	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TTGAACTATTCCTGACCCTCA	0.418													19	18					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64630183	64630183	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:64630183C>T	uc001xgm.2	+	89	16593	c.16363C>T	c.(16363-16365)CGA>TGA	p.R5455*	SYNE2_uc001xgl.2_Nonsense_Mutation_p.R5455*|SYNE2_uc010apy.2_Nonsense_Mutation_p.R1840*|SYNE2_uc001xgn.2_Nonsense_Mutation_p.R417*|SYNE2_uc001xgo.2_RNA|SYNE2_uc010aqa.2_5'UTR	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5455	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TGTCCTGGATCGACTCCCACA	0.527													6	55					0	0	1	0	0
ESR2	2100	broad.mit.edu	37	14	64716295	64716295	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:64716295G>A	uc001xha.1	-	7	1662	c.1194C>T	c.(1192-1194)CTC>CTT	p.L398L	ESR2_uc001xgu.2_Silent_p.L398L|ESR2_uc001xgv.2_Silent_p.L398L|ESR2_uc001xgw.2_RNA|ESR2_uc001xgx.2_Silent_p.L398L|ESR2_uc001xgy.1_Silent_p.L398L|ESR2_uc001xgz.1_Silent_p.L398L|ESR2_uc010aqb.1_RNA|ESR2_uc010aqc.1_Intron|ESR2_uc010aqd.1_Intron	NM_001437	NP_001428	Q92731	ESR2_HUMAN	estrogen receptor beta isoform 1	398	Steroid-binding.				cell-cell signaling|negative regulation of cell growth|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	mitochondrion|nucleoplasm	enzyme binding|estrogen receptor activity|receptor antagonist activity|sequence-specific DNA binding transcription factor activity|steroid binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3				all cancers(60;0.00916)|OV - Ovarian serous cystadenocarcinoma(108;0.0111)|BRCA - Breast invasive adenocarcinoma(234;0.0437)	Bicalutamide(DB01128)|Estradiol(DB00783)|Estramustine(DB01196)|Raloxifene(DB00481)|Tamoxifen(DB00675)|Trilostane(DB01108)	CCTTGACACAGAGATATTCTT	0.428													54	49					0	0	1	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65210329	65210329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:65210329G>A	uc001xho.1	+	17	3837	c.3568G>A	c.(3568-3570)GAA>AAA	p.E1190K	PLEKHG3_uc001xhn.1_Missense_Mutation_p.E1134K|PLEKHG3_uc001xhp.2_Missense_Mutation_p.E1311K|PLEKHG3_uc010aqh.1_Missense_Mutation_p.E732K|PLEKHG3_uc001xhq.1_Missense_Mutation_p.E695K	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	1190					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		CCAGCCGAAGGAAGAGGGTTC	0.617													11	17					0	0	1	0	0
SPTB	6710	broad.mit.edu	37	14	65242052	65242052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:65242052C>T	uc001xht.2	-	22	4687	c.4633G>A	c.(4633-4635)GTG>ATG	p.V1545M	SPTB_uc001xhr.2_Missense_Mutation_p.V1545M|SPTB_uc001xhs.2_Missense_Mutation_p.V1545M|SPTB_uc001xhu.2_Missense_Mutation_p.V1545M|SPTB_uc010aqi.2_Missense_Mutation_p.V206M	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1545	Spectrin 12.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		GCCGCCTCCACCAGCTGCTGC	0.682													16	10					0	0	1	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634273	70634273	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:70634273C>T	uc001xly.2	-	2	1621	c.867G>A	c.(865-867)GGG>GGA	p.G289G	SLC8A3_uc001xlw.2_Silent_p.G289G|SLC8A3_uc001xlx.2_Silent_p.G289G|SLC8A3_uc001xlz.2_Silent_p.G289G|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	289	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TCATCATTTTCCCATCCATCT	0.473													3	34					0	0	1	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713742	70713742	+	Silent	SNP	G	A	A	rs115439852	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:70713742G>A	uc010ttg.1	-	1	777	c.126C>T	c.(124-126)CTC>CTT	p.L42L		NR_003951				SubName: Full=ADAM21-like protein;												0						CCACAACAACGAGCTCCAGAA	0.433													6	61					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71543097	71543097	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:71543097C>T	uc001xmo.2	+	28	5744	c.5298C>T	c.(5296-5298)TAC>TAT	p.Y1766Y	PCNX_uc010are.1_Silent_p.Y1655Y|PCNX_uc010arf.1_Silent_p.Y554Y	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1766						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GTGTGATTTACCTCAACTGGA	0.408													5	58					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71575489	71575489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:71575489C>T	uc001xmo.2	+	34	6916	c.6470C>T	c.(6469-6471)TCG>TTG	p.S2157L	PCNX_uc010are.1_Missense_Mutation_p.S2046L|PCNX_uc010arf.1_Missense_Mutation_p.S945L|PCNX_uc001xmp.2_Missense_Mutation_p.S241L	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	2157	Ser-rich.					integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		AGTCAGATATCGCTTCGAAAC	0.567													3	52					0	0	1	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72137902	72137902	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:72137902C>T	uc001xms.2	+	8	2670	c.2322C>T	c.(2320-2322)TTC>TTT	p.F774F	SIPA1L1_uc001xmt.2_Silent_p.F774F|SIPA1L1_uc001xmu.2_Silent_p.F774F|SIPA1L1_uc001xmv.2_Silent_p.F774F|SIPA1L1_uc010ttm.1_Silent_p.F249F	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	774	Rap-GAP.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GGGTCACTTTCCCTAAGTCAA	0.483													17	138					0	0	1	0	0
HEATR4	399671	broad.mit.edu	37	14	73989577	73989577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:73989577C>T	uc010tub.1	-	3	602	c.280G>A	c.(280-282)GAC>AAC	p.D94N	HEATR4_uc010tua.1_Missense_Mutation_p.D47N	NM_203309	NP_976054			HEAT repeat containing 4											ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00386)|OV - Ovarian serous cystadenocarcinoma(108;0.0719)		TAGAGGTGGTCAAAGCTGTAC	0.512													26	31					0	0	1	0	0
LTBP2	4053	broad.mit.edu	37	14	74995270	74995270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:74995270C>T	uc001xqa.2	-	12	2671	c.2284G>A	c.(2284-2286)GGG>AGG	p.G762R		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	762					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GGCAGTGCCCCGCTGCTCCTC	0.677													26	25					0	0	1	0	0
PROX2	283571	broad.mit.edu	37	14	75330535	75330535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:75330535C>T	uc001xqr.1	-	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I	PROX2_uc001xqq.1_5'UTR	NM_001080408	NP_001073877	Q3B8N5	PROX2_HUMAN	prospero homeobox 2	1					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00652)		AGTTTGGATCCATCCCAGGCA	0.547													3	42					0	0	1	0	0
C14orf179	112752	broad.mit.edu	37	14	76488726	76488726	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:76488726G>A	uc010asm.1	+	3	238	c.204G>A	c.(202-204)GTG>GTA	p.V68V	C14orf179_uc001xsf.2_RNA|C14orf179_uc010asl.1_Silent_p.V68V|C14orf179_uc001xsg.2_Silent_p.V68V|C14orf179_uc010tve.1_RNA|C14orf179_uc001xse.2_Silent_p.V68V	NM_001102564	NP_001096034	Q96FT9	IFT43_HUMAN	hypothetical protein LOC112752 isoform 2	68					cilium morphogenesis|intraflagellar retrograde transport						0				BRCA - Breast invasive adenocarcinoma(234;0.0199)		GTGATTCCGTGAAGGCTTCGA	0.463													8	179					0	0	1	0	0
VASH1	22846	broad.mit.edu	37	14	77236309	77236309	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:77236309C>T	uc001xst.2	+	2	1243	c.313C>T	c.(313-315)CCC>TCC	p.P105S	VASH1_uc001xss.2_Missense_Mutation_p.P105S	NM_014909	NP_055724	Q7L8A9	VASH1_HUMAN	vasohibin 1	105					cell cycle arrest|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of endothelial cell proliferation	endoplasmic reticulum|extracellular space					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0283)		TCCCCAGATCCCCATACCGAG	0.602													55	52					0	0	1	0	0
ADCK1	57143	broad.mit.edu	37	14	78392222	78392222	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:78392222C>T	uc001xui.2	+	9	1223	c.1124C>T	c.(1123-1125)CCC>CTC	p.P375L	ADCK1_uc010tvo.1_RNA|ADCK1_uc001xuj.2_Missense_Mutation_p.P307L|ADCK1_uc001xul.2_Missense_Mutation_p.P82L	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	382	Protein kinase.					extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		GATCTCTACCCCTTGTTTGCC	0.602													130	125					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79175782	79175782	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:79175782G>A	uc001xun.2	+	4	816	c.325G>A	c.(325-327)GGC>AGC	p.G109S	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.G243S	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	482	Extracellular (Potential).|Laminin G-like 3.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		AGAGCCCAATGGCCTGATCCT	0.512													32	36					0	0	1	0	0
NRXN3	9369	broad.mit.edu	37	14	79434647	79434647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:79434647G>A	uc001xun.2	+	11	2472	c.1981G>A	c.(1981-1983)GAT>AAT	p.D661N	NRXN3_uc001xum.1_RNA|NRXN3_uc010asv.1_Missense_Mutation_p.D786N	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1034	Extracellular (Potential).|Laminin G-like 5.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		CCTCATCAATGATGCTCTTCA	0.507													38	37					0	0	1	0	0
C14orf145	145508	broad.mit.edu	37	14	80971341	80971342	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:80971341_80971342CC>TT	uc001xux.2	-	23	3265_3266	c.3094_3095GG>AA	c.(3094-3096)GGT>AAT	p.G1032N	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	1032						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		AGTGTGGGAACCTTCCAGAAAG	0.431													14	17					0	0	1	0	0
C14orf145	145508	broad.mit.edu	37	14	81244351	81244351	+	Missense_Mutation	SNP	G	A	A	rs140809152		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:81244351G>A	uc001xux.2	-	15	2422	c.2251C>T	c.(2251-2253)CGT>TGT	p.R751C	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	751	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		AGCTGACCACGATGAATTTTA	0.368													36	36					0	0	1	0	0
SEL1L	6400	broad.mit.edu	37	14	81969214	81969214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:81969214G>A	uc010tvv.1	-	6	745	c.628C>T	c.(628-630)CTC>TTC	p.L210F	SEL1L_uc001xvo.3_Missense_Mutation_p.L210F	NM_005065	NP_005056	Q9UBV2	SE1L1_HUMAN	sel-1 suppressor of lin-12-like precursor	210	Lumenal (Potential).|Interaction with ERLEC1, OS9 and SYVN1.|Sel1-like 1.				Notch signaling pathway	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0299)		GCCTTTTGGAGATACCGATAT	0.363													4	39					0	0	1	0	0
SPATA7	55812	broad.mit.edu	37	14	88892634	88892634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:88892634C>T	uc001xwq.2	+	6	582	c.431C>T	c.(430-432)TCA>TTA	p.S144L	SPATA7_uc001xwr.2_Missense_Mutation_p.S112L|SPATA7_uc001xws.2_Missense_Mutation_p.S80L|SPATA7_uc001xwt.2_Missense_Mutation_p.S38L	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	144					response to stimulus|visual perception					ovary(1)	1						AATGGATTTTCATCCTTTGCA	0.403													4	34					0	0	1	0	0
SPATA7	55812	broad.mit.edu	37	14	88892806	88892806	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:88892806A>G	uc001xwq.2	+	6	754	c.603A>G	c.(601-603)AGA>AGG	p.R201R	SPATA7_uc001xwr.2_Silent_p.R169R|SPATA7_uc001xws.2_Silent_p.R137R|SPATA7_uc001xwt.2_Silent_p.R95R|SPATA7_uc001xwu.2_5'Flank	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	201					response to stimulus|visual perception					ovary(1)	1						TGTATGGCAGAAGGCCCAGAA	0.507													34	38					0	0	1	0	0
CATSPERB	79820	broad.mit.edu	37	14	92189528	92189528	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:92189528G>A	uc001xzs.1	-	4	314	c.174C>T	c.(172-174)ATC>ATT	p.I58I		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	58					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				AGAAACACTGGATTTTCTTTA	0.348													3	24					0	0	1	0	0
FBLN5	10516	broad.mit.edu	37	14	92403441	92403441	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:92403441G>A	uc001xzx.3	-	4	702	c.229C>T	c.(229-231)CGA>TGA	p.R77*	FBLN5_uc010aud.2_Nonsense_Mutation_p.R82*|FBLN5_uc010aue.2_Nonsense_Mutation_p.R118*	NM_006329	NP_006320	Q9UBX5	FBLN5_HUMAN	fibulin 5 precursor	77	EGF-like 1; calcium-binding (Potential).				cell-matrix adhesion|elastic fiber assembly|protein localization at cell surface|regulation of removal of superoxide radicals	extracellular space|proteinaceous extracellular matrix|soluble fraction	calcium ion binding|integrin binding|protein C-terminus binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		all_cancers(154;0.0722)				tagggCCCTCGATACACAGGG	0.473													40	24					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94060035	94060035	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:94060035G>A	uc001ybv.1	+	20	2594	c.2511G>A	c.(2509-2511)AGG>AGA	p.R837R	KIAA1409_uc001ybs.1_Silent_p.R837R	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1014						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GCCTGTGGAGGGTCGTCAAAT	0.473													4	116					0	0	1	0	0
PPP4R4	57718	broad.mit.edu	37	14	94722890	94722890	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:94722890G>A	uc001ycs.1	+	17	2113	c.1959G>A	c.(1957-1959)AGG>AGA	p.R653R		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	653						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TGTGTGTGAGGAAACTCCTGT	0.368													5	25					0	0	1	0	0
BDKRB2	624	broad.mit.edu	37	14	96706956	96706956	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:96706956G>A	uc010avm.1	+	3	487	c.291G>A	c.(289-291)GGG>GGA	p.G97G	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.G70G|BDKRB2_uc001yfg.2_Silent_p.G97G	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	97	Helical; Name=2; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		TCTACCTGGGGAACCTGGCCG	0.607													86	92					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101350867	101350867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:101350867C>T	uc010txj.1	-	1	318	c.259G>A	c.(259-261)GAA>AAA	p.E87K	MIR432_hsa-mir-432|MI0003133_RNA|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	87										pancreas(1)	1						TCCTCTATTTCCTTACGTGGG	0.557													20	24					0	0	1	0	0
RTL1	388015	broad.mit.edu	37	14	101351016	101351016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:101351016G>A	uc010txj.1	-	1	169	c.110C>T	c.(109-111)TCG>TTG	p.S37L	uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	37										pancreas(1)	1						TCCACTGCCCGACGTCGCCTC	0.597													4	19					0	0	1	0	0
MIR496	574454	broad.mit.edu	37	14	101526986	101526986	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:101526986C>T	hsa-mir-496|MI0003136	+			c.77C>T			uc010awh.1_5'Flank|MIR377_hsa-mir-377|MI0000785_5'Flank																	0						TGGCCAATCTCCTTTCGGTAC	0.527													9	9					0	0	1	0	0
MIR410	574434	broad.mit.edu	37	14	101532322	101532322	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:101532322C>T	hsa-mir-410|MI0002465	+			c.74C>T			MIR656_hsa-mir-656|MI0003678_5'Flank																	0						GGCCTGTTTTCAGTACCGCTA	0.537													14	27					0	0	1	0	0
TECPR2	9895	broad.mit.edu	37	14	102891482	102891482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:102891482G>A	uc001ylw.1	+	6	953	c.805G>A	c.(805-807)GAA>AAA	p.E269K	TECPR2_uc010txw.1_3'UTR|TECPR2_uc010awl.2_Missense_Mutation_p.E269K|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	269							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						CAAGCCTTTTGAACTGCACCC	0.547													29	24					0	0	1	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104206791	104206791	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:104206791G>A	uc001yof.1	-	12	2245	c.1962C>T	c.(1960-1962)CCC>CCT	p.P654P	PPP1R13B_uc010awv.1_RNA|PPP1R13B_uc001yog.1_Silent_p.P521P	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1	654	Pro-rich.				apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				CGGGGGCGGCGGGGCCATCCT	0.647													70	52					0	0	1	0	0
KIAA0284	283638	broad.mit.edu	37	14	105353335	105353335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:105353335C>T	uc010axb.2	+	12	2983	c.2759C>T	c.(2758-2760)GCC>GTC	p.A920V	INF2_uc010tyi.1_Intron|KIAA0284_uc001ypr.2_Missense_Mutation_p.A850V|KIAA0284_uc001yps.2_Missense_Mutation_p.A826V|KIAA0284_uc001ypt.2_5'Flank	NM_001112726	NP_001106197	Q9Y4F5	K0284_HUMAN	hypothetical protein LOC283638 isoform 1	920						cytoplasm|microtubule				breast(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000472)|OV - Ovarian serous cystadenocarcinoma(23;0.00596)|Epithelial(46;0.0149)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.178)		ACGGAGACGGCCCTGGCGGCC	0.682													29	20					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105406959	105406959	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:105406959A>G	uc010axc.1	-	7	14949	c.14829T>C	c.(14827-14829)GAT>GAC	p.D4943D	AHNAK2_uc001ypx.2_Silent_p.D4843D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4943						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CGTGGTCAGCATCTTCAGAAG	0.552													5	25					0	0	1	0	0
AHNAK2	113146	broad.mit.edu	37	14	105411707	105411707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:105411707G>A	uc010axc.1	-	7	10201	c.10081C>T	c.(10081-10083)CCT>TCT	p.P3361S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P3261S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	3361						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCCACAGAAGGGAGCTGAATG	0.672													79	85					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106173760	106173760	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:106173760C>T	uc010tyt.1	-	3633		c.60138G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001ysc.2_5'Flank					Parts of antibodies, mostly variable regions.												0						GGGGCAGCTCCTGTGACCCCT	0.677													5	41					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106321303	106321303	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:106321303G>A	uc010tyt.1	-	3600		c.55848C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						GGCAAAGGATGGGGGGATGGC	0.597													12	180					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106610562	106610562	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:106610562G>A	uc010tyt.1	-	1167		c.26269C>T								Parts of antibodies, mostly variable regions.												0						AGAGTCTAAGGGACCCCCCAG	0.587													48	63					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106791212	106791212	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:106791212G>A	uc010tyt.1	-	386		c.14406C>T								Parts of antibodies, mostly variable regions.												0						CATAGCTACTGAAGGTGAATC	0.567													5	93					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106815929	106815929	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:106815929G>A	uc010tyt.1	-	342		c.13230C>T								Parts of antibodies, mostly variable regions.												0						CATAGCTACTGAAGGTGAATC	0.572													5	8					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	107083416	107083416	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr14:107083416C>T	uc010tyt.1	-	113		c.5377G>A								Parts of antibodies, mostly variable regions.												0						CCACTCCAGTCCCTTCCCTGG	0.552													35	63					0	0	1	0	0
BCL8	606	broad.mit.edu	37	15	20874966	20874967	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:20874966_20874967CC>TT	uc010tze.1	-	3	379	c.172_splice	c.e3-1	p.V58_splice	BCL8_uc010tzd.1_Splice_Site	NR_027992				RecName: Full=Putative protein BCL8;												0						GAAAGTTGAACCTAATACAGAA	0.287													7	26					0	0	1	0	0
OR4M2	390538	broad.mit.edu	37	15	22369419	22369419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:22369419C>T	uc010tzu.1	+	1	844	c.844C>T	c.(844-846)CCT>TCT	p.P282S	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TTTAATATTCCCTTTACGTAA	0.378													21	93					0	0	1	0	0
NIPA1	123606	broad.mit.edu	37	15	23052734	23052734	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:23052734G>A	uc001yvc.2	-	4	364	c.339C>T	c.(337-339)CTC>CTT	p.L113L	NIPA1_uc001yvd.2_5'UTR|NIPA1_uc001yve.2_Silent_p.L38L	NM_144599	NP_653200	Q7RTP0	NIPA1_HUMAN	non-imprinted in Prader-Willi/Angelman syndrome	113	Cytoplasmic (Potential).				cell death	early endosome|integral to membrane|plasma membrane					0		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;4.18e-06)|Epithelial(43;3.97e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00165)		TTTCCTTCAGGAGATAGGAAG	0.418													37	60					0	0	1	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889360	23889360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:23889360G>A	uc001ywj.3	-	1	1816	c.1721C>T	c.(1720-1722)CCC>CTC	p.P574L		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		ATACTCTGCGGGCTCAGTGTA	0.502													17	20					0	0	1	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890549	23890549	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:23890549C>T	uc001ywj.3	-	1	627	c.532G>A	c.(532-534)GAG>AAG	p.E178K		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GCAAAGGTCTCCGGTGTGGCA	0.592													27	37					0	0	1	0	0
UBE3A	7337	broad.mit.edu	37	15	25616661	25616661	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:25616661A>T	uc001zaq.2	-	4	669	c.669T>A	c.(667-669)AAT>AAA	p.N223K	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.N200K|UBE3A_uc001zas.2_Missense_Mutation_p.N220K|UBE3A_uc001zat.2_Missense_Mutation_p.N200K	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	223					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		ATTTTTGCAAATTGTTGTCTC	0.413													75	123					0	0	1	0	0
ATP10A	57194	broad.mit.edu	37	15	26107965	26107965	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:26107965G>A	uc010ayu.2	-	1	385	c.279C>T	c.(277-279)TTC>TTT	p.F93F	ATP10A_uc001zax.2_RNA	NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	93	Helical; (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		GCAGCGCGATGAAGACAAAGT	0.627													9	15					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	29092295	29092295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:29092295C>T	uc010uar.1	-	2	221	c.92G>A	c.(91-93)GGA>GAA	p.G31E						SubName: Full=cDNA FLJ59069, weakly similar to Golgin subfamily A member 6;																		GTCGGTTGCTCCGGTACCAAC	0.483													5	15					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31330321	31330321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:31330321G>A	uc001zfm.2	-	18	2427	c.2299C>T	c.(2299-2301)CGC>TGC	p.R767C	TRPM1_uc010azy.2_Missense_Mutation_p.R674C|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	767	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		TCATATGTGCGAAATTCCAAA	0.388													18	23					0	0	1	0	0
TRPM1	4308	broad.mit.edu	37	15	31332543	31332543	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:31332543G>A	uc001zfm.2	-	17	2156	c.2028C>T	c.(2026-2028)TTC>TTT	p.F676F	TRPM1_uc010azy.2_Silent_p.F583F|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	676	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		CAAGCTGGCCGAAGTCTCTGG	0.522													19	61					0	0	1	0	0
C15orf29	79768	broad.mit.edu	37	15	34455820	34455820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:34455820G>A	uc001zhp.2	-	2	218	c.58C>T	c.(58-60)CAT>TAT	p.H20Y	C15orf29_uc010ubz.1_Intron|C15orf29_uc010uca.1_Missense_Mutation_p.H20Y	NM_024713	NP_078989	Q9H079	CO029_HUMAN	hypothetical protein LOC79768	20						nucleolus				ovary(1)	1		all_lung(180;1.86e-06)		all cancers(64;5.49e-18)|GBM - Glioblastoma multiforme(113;8.91e-07)|BRCA - Breast invasive adenocarcinoma(123;0.026)|Lung(196;0.229)		TCAATGAAATGATCCTCAATC	0.279													19	29					0	0	1	0	0
TMCO5A	145942	broad.mit.edu	37	15	38234401	38234401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:38234401G>A	uc001zjw.2	+	8	617	c.514G>A	c.(514-516)GAA>AAA	p.E172K	TMCO5A_uc001zjv.1_Missense_Mutation_p.E172K|TMCO5A_uc010bbc.1_Missense_Mutation_p.E172K	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	172	Potential.					integral to membrane				central_nervous_system(1)	1						GAAGTACCAGGAAACGTTGAA	0.368													44	94					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39874481	39874481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:39874481C>T	uc001zkh.2	+	3	334	c.155C>T	c.(154-156)CCC>CTC	p.P52L		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	52	TSP N-terminal.|Heparin-binding.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GTGAAGGGCCCCGACCCTTCC	0.612													36	55					0	0	1	0	0
GPR176	11245	broad.mit.edu	37	15	40099353	40099353	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:40099353G>A	uc001zkj.1	-	2	1145	c.279C>T	c.(277-279)GTC>GTT	p.V93V	GPR176_uc010uck.1_Silent_p.V33V	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	93	Helical; Name=2; (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		AGGGCACACAGACCAGGCTGG	0.493													86	162					0	0	1	0	0
C15orf23	90417	broad.mit.edu	37	15	40675107	40675107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:40675107C>T	uc001zll.2	+	1	186	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C15orf23_uc010ucp.1_Missense_Mutation_p.S24F|C15orf23_uc001zlo.2_Missense_Mutation_p.S24F|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	24						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GAGTGCGATTCCCACCCACTT	0.567													25	45					0	0	1	0	0
EHD4	30844	broad.mit.edu	37	15	42193053	42193053	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:42193053C>T	uc001zot.2	-	6	1479	c.1416G>A	c.(1414-1416)AAG>AAA	p.K472K		NM_139265	NP_644670	Q9H223	EHD4_HUMAN	EH-domain containing 4	472	EH.				endocytic recycling|protein homooligomerization	early endosome membrane|endoplasmic reticulum|nucleus|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			ovary(2)	2		all_cancers(109;2.54e-12)|all_epithelial(112;6.59e-11)|Lung NSC(122;2.17e-07)|all_lung(180;8.79e-07)|Melanoma(134;0.091)		OV - Ovarian serous cystadenocarcinoma(18;1.6e-19)|GBM - Glioblastoma multiforme(94;3.77e-06)|COAD - Colon adenocarcinoma(120;0.0474)|Colorectal(105;0.0538)		TCACCATCTCCTTCTTGGCGT	0.582													30	59					0	0	1	0	0
TRIM69	140691	broad.mit.edu	37	15	45050926	45050926	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:45050926G>A	uc001zuf.2	+	5	1582	c.687G>A	c.(685-687)GGG>GGA	p.G229G	TRIM69_uc001zui.1_Silent_p.G25G|TRIM69_uc010bdy.1_Silent_p.G25G|TRIM69_uc001zug.1_Silent_p.G229G|TRIM69_uc001zuh.1_Silent_p.G70G	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	229	Potential.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		GGGAAGAGGGGAAAGCCTTGA	0.473													26	34					0	0	1	0	0
FBN1	2200	broad.mit.edu	37	15	48719898	48719898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:48719898G>A	uc001zwx.1	-	58	7398	c.7070C>T	c.(7069-7071)CCC>CTC	p.P2357L	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	2357	TB 9.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TTTGGTGACGGGGTTCCTGTT	0.542													26	53					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50211112	50211112	+	Silent	SNP	C	T	T	rs116571500	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:50211112C>T	uc001zxu.2	-	19	2101	c.1959G>A	c.(1957-1959)CAG>CAA	p.Q653Q	ATP8B4_uc010ber.2_Silent_p.Q526Q|ATP8B4_uc010ufd.1_Silent_p.Q463Q|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	653	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TAACACCCTCCTGTAACTTAT	0.348													43	82					0	0	1	0	0
SPPL2A	84888	broad.mit.edu	37	15	51040950	51040950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:51040950C>T	uc001zyv.2	-	3	475	c.295G>A	c.(295-297)GAA>AAA	p.E99K		NM_032802	NP_116191	Q8TCT8	PSL2_HUMAN	signal peptide peptidase-like 2A	99	Cytoplasmic (Potential).|PA.					integral to membrane	aspartic-type endopeptidase activity				0				all cancers(107;0.000712)|GBM - Glioblastoma multiforme(94;0.00314)		CTGGCTTTTTCAAGAAAATGG	0.393													66	143					0	0	1	0	0
CYP19A1	1588	broad.mit.edu	37	15	51507376	51507376	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:51507376C>T	uc001zyz.3	-	9	1163	c.912G>A	c.(910-912)CTG>CTA	p.L304L	CYP19A1_uc001zza.3_Silent_p.L304L|CYP19A1_uc001zzb.2_Silent_p.L304L	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	304					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	GAGCTGCGATCAGCATTTCCA	0.398													35	68					0	0	1	0	0
MYO5C	55930	broad.mit.edu	37	15	52500759	52500759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:52500759C>T	uc010bff.2	-	36	4515	c.4378G>A	c.(4378-4380)GGA>AGA	p.G1460R	MYO5C_uc010uga.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1460	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		ACCTCTTCTCCGCTGTACTGC	0.463											OREG0023129	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	37	70					0	0	1	0	0
PRTG	283659	broad.mit.edu	37	15	55931935	55931935	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:55931935C>T	uc002adg.2	-	13	2277	c.2229G>A	c.(2227-2229)AGG>AGA	p.R743R		NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	743	Fibronectin type-III 4.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		ATGCAGGCCTCCTCCAGTGCA	0.507													62	117					0	0	1	0	0
PRTG	283659	broad.mit.edu	37	15	55964805	55964805	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:55964805C>T	uc002adg.2	-	11	1927	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K	PRTG_uc002adh.2_Missense_Mutation_p.E129K	NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	627	Fibronectin type-III 3.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TTCAGAGGCTCCAAATGCAAC	0.438													12	21					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57809164	57809164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:57809164G>A	uc002aeg.2	+	9	2666	c.2590G>A	c.(2590-2592)GAA>AAA	p.E864K	CGNL1_uc010bfw.2_Missense_Mutation_p.E864K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	864	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CAAGGCGAAGGAAACGCTGAA	0.547													15	27					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57838293	57838293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:57838293C>T	uc002aeg.2	+	18	3705	c.3629C>T	c.(3628-3630)GCC>GTC	p.A1210V	CGNL1_uc010bfw.2_Missense_Mutation_p.A1210V	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	1210	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		CGTTTGAAAGCCATGAAGCGG	0.577													13	37					0	0	1	0	0
GCOM1	145781	broad.mit.edu	37	15	57918077	57918077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:57918077C>T	uc002aei.2	+	5	631	c.512C>T	c.(511-513)TCC>TTC	p.S171F	GCOM1_uc002aej.2_Missense_Mutation_p.S171F|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_Intron|GCOM1_uc002aem.2_Missense_Mutation_p.S171F|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Missense_Mutation_p.S171F|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	171					intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GCATCAGATTCCATTGGCCTG	0.483													19	36					0	0	1	0	0
RAB8B	51762	broad.mit.edu	37	15	63547712	63547712	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:63547712A>G	uc002alz.2	+	4	349	c.253A>G	c.(253-255)ATG>GTG	p.M85V	RAB8B_uc010uih.1_Missense_Mutation_p.M85V	NM_016530	NP_057614	Q92930	RAB8B_HUMAN	RAB8B, member RAS oncogene family	85					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			ovary(1)|kidney(1)	2						ATAGGGCATTATGCTGGTCTA	0.313													16	29					0	0	1	0	0
KBTBD13	390594	broad.mit.edu	37	15	65370324	65370324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:65370324G>A	uc010uis.1	+	1	1171	c.1171G>A	c.(1171-1173)GGA>AGA	p.G391R	RASL12_uc010uir.1_5'Flank	NM_001101362	NP_001094832	C9JR72	KBTBD_HUMAN	hypothetical protein LOC390594	391	Kelch 5.					cytoplasm					0						CAACAGCAAGGGAGCGCTCTT	0.657													18	38					0	0	1	0	0
CILP	8483	broad.mit.edu	37	15	65491335	65491335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:65491335C>T	uc002aon.2	-	9	1470	c.1289G>A	c.(1288-1290)GGA>GAA	p.G430E		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	430					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						AGGGCAGCGTCCCACGTCATA	0.527													31	66					0	0	1	0	0
DENND4A	10260	broad.mit.edu	37	15	65994202	65994202	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:65994202G>A	uc002aph.2	-	18	2835	c.2457C>T	c.(2455-2457)CTC>CTT	p.L819L	DENND4A_uc002api.2_Silent_p.L819L|DENND4A_uc002apj.3_Silent_p.L819L	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	819	PPR 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						ATTGTCCACAGAGTTGCATAA	0.363													48	116					0	0	1	0	0
MAP2K1	5604	broad.mit.edu	37	15	66727557	66727557	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:66727557C>T	uc010bhq.2	+	2	748	c.273C>T	c.(271-273)GGC>GGT	p.G91G	MAP2K1_uc010ujp.1_Silent_p.G69G	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	91	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						AGCCTTCTGGCCTGGTCATGG	0.512									Cardiofaciocutaneous_syndrome				72	113					0	0	1	0	0
ITGA11	22801	broad.mit.edu	37	15	68624324	68624324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:68624324G>A	uc002ari.2	-	14	1730	c.1643C>T	c.(1642-1644)TCA>TTA	p.S548L	ITGA11_uc010bib.2_Missense_Mutation_p.S548L	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	548	FG-GAP 6.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	GTCTCGAACTGAGGCAATGGA	0.522													13	19					0	0	1	0	0
THAP10	56906	broad.mit.edu	37	15	71174914	71174914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:71174914C>T	uc002asv.2	-	3	795	c.653G>A	c.(652-654)AGA>AAA	p.R218K	LRRC49_uc002asu.2_Intron	NM_020147	NP_064532	Q9P2Z0	THA10_HUMAN	THAP domain containing 10	218							DNA binding|metal ion binding	p.R218R(1)		ovary(1)|skin(1)	2						AGAGGAAGTTCTAGACCACAA	0.393													35	64					0	0	1	0	0
THSD4	79875	broad.mit.edu	37	15	72057395	72057395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:72057395G>A	uc002atb.1	+	15	2705	c.2626G>A	c.(2626-2628)GAG>AAG	p.E876K	THSD4_uc002ate.2_Missense_Mutation_p.E516K|THSD4_uc002atg.1_Missense_Mutation_p.E79K	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	876	TSP type-1 5.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						GCAACAGAGGGAGGTGATTTG	0.512													40	88					0	0	1	0	0
MYO9A	4649	broad.mit.edu	37	15	72119127	72119128	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:72119127_72119128GG>AA	uc002atl.3	-	42	7913_7914	c.7440_7441CC>TT	c.(7438-7443)TTCCTG>TTTTTG	p.2480_2481FL>FL	MYO9A_uc002atj.2_Silent_p.411_412FL>FL|MYO9A_uc002atk.2_Silent_p.1275_1276FL>FL	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2480_2481	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TTGTCTTCCAGGAATTTGGTCT	0.441													43	84					0	0	1	0	0
HIGD2B	123346	broad.mit.edu	37	15	72968449	72968450	+	RNA	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:72968449_72968450GG>AA	uc002ava.2	-	3		c.790_791CC>TT				NR_002780				Homo sapiens HIG1 domain family, member 2B pseudogene, mRNA (cDNA clone IMAGE:5742106).												0						TGGCTGCAATGGTGAAGCCCTG	0.574													12	15					0	0	1	0	0
HIGD2B	123346	broad.mit.edu	37	15	72968672	72968672	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:72968672G>A	uc002ava.2	-	3		c.568C>T				NR_002780				Homo sapiens HIG1 domain family, member 2B pseudogene, mRNA (cDNA clone IMAGE:5742106).												0						GGGCTTCGATGATTCAAAGGG	0.483													7	3					0	0	1	0	0
NEO1	4756	broad.mit.edu	37	15	73593698	73593698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:73593698C>T	uc002avm.3	+	28	4344	c.4202C>T	c.(4201-4203)TCC>TTC	p.S1401F	NEO1_uc010ukx.1_Missense_Mutation_p.S1390F|NEO1_uc010uky.1_Missense_Mutation_p.S1348F|NEO1_uc010ukz.1_Missense_Mutation_p.S814F|NEO1_uc002avn.3_Missense_Mutation_p.S1039F	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	1401	Cytoplasmic (Potential).				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						AAGACAGCCTCCATCGGGACT	0.567													27	44					0	0	1	0	0
IMP3	55272	broad.mit.edu	37	15	75932124	75932124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:75932124G>A	uc002bat.2	-	2	1330	c.386C>T	c.(385-387)GCC>GTC	p.A129V	IMP3_uc010bkl.1_Missense_Mutation_p.A129V	NM_018285	NP_060755	Q9NV31	IMP3_HUMAN	IMP3, U3 small nucleolar ribonucleoprotein	129	S4 RNA-binding.				rRNA processing	nucleolus|ribonucleoprotein complex	protein binding|rRNA binding				0						CTCCACAAAGGCCACGGCAGC	0.662													30	54					0	0	1	0	0
SCAPER	49855	broad.mit.edu	37	15	77134244	77134244	+	Missense_Mutation	SNP	G	A	A	rs75375920	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:77134244G>A	uc002bby.2	-	4	283	c.224C>T	c.(223-225)TCG>TTG	p.S75L	SCAPER_uc002bbx.2_5'UTR|SCAPER_uc002bbz.1_5'UTR|SCAPER_uc002bca.1_5'UTR|SCAPER_uc002bcb.1_Missense_Mutation_p.S75L|SCAPER_uc002bcc.1_Missense_Mutation_p.S75L	NM_020843	NP_065894	Q9BY12	SCAPE_HUMAN	S-phase cyclin A-associated protein in the ER	74						endoplasmic reticulum|nucleus	zinc ion binding			large_intestine(1)|lung(1)|ovary(1)	3						AGTCGTAGACGATGTTATTTT	0.348													26	47					0	0	1	0	0
RASGRF1	5923	broad.mit.edu	37	15	79296452	79296452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:79296452G>A	uc002beq.2	-	16	2564	c.2189C>T	c.(2188-2190)TCC>TTC	p.S730F	RASGRF1_uc002bep.2_Missense_Mutation_p.S714F|RASGRF1_uc010blm.1_Missense_Mutation_p.S639F|RASGRF1_uc002ber.3_Missense_Mutation_p.S714F|RASGRF1_uc010unh.1_Missense_Mutation_p.S125F|RASGRF1_uc002beo.2_5'UTR	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	730	N-terminal Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GGCGCGCGGGGACTTGGGGGG	0.627													41	74					0	0	1	0	0
KIAA1199	57214	broad.mit.edu	37	15	81176591	81176591	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:81176591C>T	uc002bfw.1	+	6	953	c.693C>T	c.(691-693)ATC>ATT	p.I231I	KIAA1199_uc010unn.1_Silent_p.I231I	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	231										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						ATGGCAGGATCCTTTCTGTTG	0.478													46	74					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81624960	81624960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:81624960C>T	uc002bgo.1	-	22	3103	c.3103G>A	c.(3103-3105)GAG>AAG	p.E1035K	TMC3_uc010blr.1_RNA	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	1035	Cytoplasmic (Potential).					integral to membrane				ovary(1)|liver(1)	2						AGGGATGGCTCGAACCTGGGC	0.612													15	40					0	0	1	0	0
TMC3	342125	broad.mit.edu	37	15	81633859	81633859	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:81633859C>T	uc002bgo.1	-	16	1716	c.1716G>A	c.(1714-1716)TGG>TGA	p.W572*	TMC3_uc010blr.1_RNA|TMC3_uc002bgp.2_Nonsense_Mutation_p.W572*	NM_001080532	NP_001074001	Q7Z5M5	TMC3_HUMAN	transmembrane channel-like 3	572	Helical; (Potential).					integral to membrane				ovary(1)|liver(1)	2						AGGCCCCCATCCTGGAACCAT	0.532													5	9					0	0	1	0	0
CPEB1	64506	broad.mit.edu	37	15	83222244	83222244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:83222244C>T	uc002bit.2	-	7	1353	c.1216G>A	c.(1216-1218)GGC>AGC	p.G406S	CPEB1_uc002biq.2_Missense_Mutation_p.G271S|CPEB1_uc002bir.2_Missense_Mutation_p.G271S|CPEB1_uc002bis.2_Missense_Mutation_p.G271S|CPEB1_uc010uod.1_Missense_Mutation_p.G120S|CPEB1_uc010uoe.1_Missense_Mutation_p.G349S|CPEB1_uc002biu.2_Missense_Mutation_p.G373S|CPEB1_uc010uof.1_Missense_Mutation_p.G271S|CPEB1_uc002biv.2_Missense_Mutation_p.G346S|CPEB1_uc002bip.2_Missense_Mutation_p.G120S	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	346	RRM 1.|Necessary for stress granule assembly and correct localization in dcp1 bodies.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			GGATGCTTGCCATCCTTACCA	0.458													20	50					0	0	1	0	0
AP3B2	8120	broad.mit.edu	37	15	83334282	83334282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:83334282G>A	uc010uoh.1	-	16	2075	c.1898C>T	c.(1897-1899)GCC>GTC	p.A633V	AP3B2_uc010uoi.1_Missense_Mutation_p.A633V|AP3B2_uc010uoj.1_Missense_Mutation_p.A601V|AP3B2_uc010bmp.2_5'Flank|AP3B2_uc010uog.1_Missense_Mutation_p.A269V|AP3B2_uc002biy.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	633					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TGTGGCCTTGGCATTAAGCAG	0.597													57	142					0	0	1	0	0
BNC1	646	broad.mit.edu	37	15	83932100	83932100	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:83932100C>A	uc002bjt.1	-	4	1991	c.1903G>T	c.(1903-1905)GAG>TAG	p.E635*	BNC1_uc010uos.1_Nonsense_Mutation_p.E623*	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	635					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						TGCTCAGTCTCCCTCTCTGAA	0.542													37	90					2.95478e-19	3.00058e-19	1	1	0
BNC1	646	broad.mit.edu	37	15	83933099	83933099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:83933099C>T	uc002bjt.1	-	4	992	c.904G>A	c.(904-906)GAT>AAT	p.D302N	BNC1_uc010uos.1_Missense_Mutation_p.D290N	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	302					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						AAACACTGATCTTTTTCAACC	0.443													20	46					0	0	1	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84506958	84506958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:84506958C>T	uc002bjz.3	+	7	942	c.718C>T	c.(718-720)CCT>TCT	p.P240S	ADAMTSL3_uc002bjy.1_Missense_Mutation_p.P240S|ADAMTSL3_uc010bmt.1_Missense_Mutation_p.P240S|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.P240S	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	240						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			ACACGTTTCTCCTGAAAAAAG	0.423													29	33					0	0	1	0	0
ALPK3	57538	broad.mit.edu	37	15	85383804	85383804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:85383804G>A	uc002ble.2	+	5	2067	c.1900G>A	c.(1900-1902)GAG>AAG	p.E634K		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	634					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			TCTTGGGGAAGAGGGACCCCA	0.662													13	38					0	0	1	0	0
AGBL1	123624	broad.mit.edu	37	15	87066061	87066061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:87066061G>A	uc002blz.1	+	18	2518	c.2438G>A	c.(2437-2439)GGG>GAG	p.G813E		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	813					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						TCACTGAGCGGGGAAGATTTG	0.433													33	56					0	0	1	0	0
NTRK3	4916	broad.mit.edu	37	15	88483884	88483884	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:88483884C>A	uc002bme.1	-	14	1848	c.1686G>T	c.(1684-1686)CCG>CCT	p.P562P	NTRK3_uc002bmh.2_Silent_p.P554P|NTRK3_uc002bmf.1_Silent_p.P562P|NTRK3_uc010upl.1_Silent_p.P464P|NTRK3_uc010bnh.1_Silent_p.P554P	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	562	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGTCCTTGGTCGGGCTGAGGT	0.587			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			50	112					3.28156e-27	3.35322e-27	1	1	0
ACAN	176	broad.mit.edu	37	15	89385095	89385095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:89385095G>A	uc010upo.1	+	5	1128	c.754G>A	c.(754-756)GAG>AAG	p.E252K	ACAN_uc002bmx.2_Missense_Mutation_p.E252K|ACAN_uc010upp.1_Missense_Mutation_p.E252K|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	252					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CGAGGAGATGGAGGGTGAGCT	0.597													30	73					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89400951	89400951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:89400951G>A	uc010upo.1	+	12	5509	c.5135G>A	c.(5134-5136)GGA>GAA	p.G1712E	ACAN_uc010upp.1_Missense_Mutation_p.G1712E|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1712					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			CTCCCTTCAGGAACTGAACTC	0.537													82	189					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90335399	90335399	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:90335399G>A	uc002bop.3	-	18	2812	c.2520C>T	c.(2518-2520)ATC>ATT	p.I840I		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	840	Extracellular.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	ACCTGTTCAGGATCCACAACT	0.617													40	69					0	0	1	0	0
CRTC3	64784	broad.mit.edu	37	15	91172683	91172683	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:91172683T>C	uc002bpp.2	+	11	1291	c.1185T>C	c.(1183-1185)CTT>CTC	p.L395L	CRTC3_uc002bpo.2_Silent_p.L395L	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	395					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			CTCTCACGCTTTCTCCTGGCC	0.577			T	MAML2	salivary gland mucoepidermoid								99	152					0	0	1	0	0
CHD2	1106	broad.mit.edu	37	15	93499745	93499745	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:93499745G>A	uc002bsp.2	+	16	2441	c.1866G>A	c.(1864-1866)TTG>TTA	p.L622L	CHD2_uc002bso.1_Silent_p.L622L	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	622	Helicase ATP-binding.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			CCCATCGGTTGAAGAATGATG	0.453													51	72					0	0	1	0	0
MCTP2	55784	broad.mit.edu	37	15	94884127	94884127	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:94884127G>A	uc002btj.2	+	6	1008	c.943G>A	c.(943-945)GTA>ATA	p.V315I	MCTP2_uc010urg.1_Missense_Mutation_p.V315I|MCTP2_uc002bti.2_Missense_Mutation_p.V315I|MCTP2_uc010boj.2_Missense_Mutation_p.V44I|MCTP2_uc010bok.2_Missense_Mutation_p.V315I|MCTP2_uc002btg.3_Missense_Mutation_p.V315I|MCTP2_uc002bth.3_Missense_Mutation_p.V315I	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	315					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GAACCTAGTGGTAAAACAGGG	0.373													19	45					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	66966	66966	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:66966G>A	uc002cfg.1	-	5	1329	c.670C>T	c.(670-672)CTG>TTG	p.L224L		NM_182905	NP_878908			WAS protein family homolog 1																		GCATCAAACAGCTTCTCCTCT	0.577													9	51					0	0	1	0	0
NHLRC4	283948	broad.mit.edu	37	16	618306	618306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:618306G>A	uc002chl.2	+	2	855	c.259G>A	c.(259-261)GAG>AAG	p.E87K	PIGQ_uc010bqw.2_Intron|PIGQ_uc002chm.2_5'Flank|PIGQ_uc002chn.2_5'Flank|PIGQ_uc002cho.2_5'Flank	NM_176677	NP_788850	P0CG21	NHLC4_HUMAN	hypothetical protein LOC283948	87	NHL 2.										0						CCTGGTGTCAGAGGGGCTTGG	0.627													9	5					0	0	1	0	0
RAB40C	57799	broad.mit.edu	37	16	675940	675940	+	Silent	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:675940G>T	uc002chr.2	+	5	500	c.384G>T	c.(382-384)CTG>CTT	p.L128L	RAB40C_uc002chq.2_Intron	NM_021168	NP_066991	Q96S21	RB40C_HUMAN	RAB40C, member RAS oncogene family	128	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0		Hepatocellular(780;0.0218)				GAAACCGGCTGCACCTGGCCT	0.642													15	18					1.33834e-09	1.34886e-09	1	1	0
TPSG1	25823	broad.mit.edu	37	16	1271985	1271985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:1271985G>A	uc002ckw.2	-	6	771	c.769C>T	c.(769-771)CGT>TGT	p.R257C		NM_012467	NP_036599	Q9NRR2	TRYG1_HUMAN	transmembrane tryptase preproprotein	257	Peptidase S1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				GCAGGGACACGAGTGTAGACT	0.672													29	24					0	0	1	0	0
HAGH	3029	broad.mit.edu	37	16	1867245	1867246	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:1867245_1867246CC>TT	uc002cna.2	-	6	975_976	c.568_569GG>AA	c.(568-570)GGG>AAG	p.G190K	HAGH_uc002cmz.2_Missense_Mutation_p.G142K|HAGH_uc010uvp.1_Missense_Mutation_p.G154R|HAGH_uc002cnb.1_Missense_Mutation_p.G142K	NM_005326	NP_005317	Q16775	GLO2_HUMAN	hydroxyacylglutathione hydrolase isoform 1	190					glutathione biosynthetic process	cytoplasm|mitochondrial matrix|mitochondrial matrix	hydroxyacylglutathione hydrolase activity|zinc ion binding			ovary(1)	1		Hepatocellular(780;0.00335)			Glutathione(DB00143)	ATAGAACTTCCCGCAGCCAGCC	0.634													27	21					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2162876	2162876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2162876G>A	uc002cos.1	-	13	3283	c.3074C>T	c.(3073-3075)TCC>TTC	p.S1025F	PKD1_uc002cot.1_Missense_Mutation_p.S1025F	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1025	PKD 5.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CGGCACTGTGGAGACCTGCAG	0.642													6	67					0	0	1	0	0
TRAF7	84231	broad.mit.edu	37	16	2223270	2223270	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2223270G>A	uc002cow.2	+	10	981	c.882G>A	c.(880-882)ACG>ACA	p.T294T		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	294					activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						TGCAGCAGACGGATGACCGCT	0.612													10	11					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2369634	2369634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2369634G>A	uc002cpy.1	-	8	1533	c.821C>T	c.(820-822)ACC>ATC	p.T274I	ABCA3_uc010bsk.1_Missense_Mutation_p.T274I|ABCA3_uc010bsl.1_Missense_Mutation_p.T274I	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	274	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GGTGAGCGCGGTGTAGGTGAA	0.612													59	35					0	0	1	0	0
ABCA3	21	broad.mit.edu	37	16	2376113	2376113	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2376113G>A	uc002cpy.1	-	5	929	c.217C>T	c.(217-219)CCG>TCG	p.P73S	ABCA3_uc010bsk.1_Missense_Mutation_p.P73S|ABCA3_uc010bsl.1_Missense_Mutation_p.P73S|ABCA3_uc002cpz.1_Missense_Mutation_p.P73S	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	73					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				TCTCCTGGCGGAGGGAAGGTG	0.582													4	54					0	0	1	0	0
KCTD5	54442	broad.mit.edu	37	16	2757314	2757314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2757314G>A	uc002crd.2	+	6	746	c.691G>A	c.(691-693)GGC>AGC	p.G231S		NM_018992	NP_061865	Q9NXV2	KCTD5_HUMAN	potassium channel tetramerisation domain	231					interspecies interaction between organisms	cytosol|nucleus|voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity				0						GCAAGAACGAGGCTCAAGGAT	0.483													6	61					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2807934	2807934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2807934C>T	uc002crk.2	+	4	1052	c.503C>T	c.(502-504)CCC>CTC	p.P168L	SRRM2_uc002crj.1_Missense_Mutation_p.P72L|SRRM2_uc002crl.1_Missense_Mutation_p.P168L|SRRM2_uc010bsu.1_Missense_Mutation_p.P72L	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	168						Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCTGAGCCTCCCAAACCTTAC	0.353													6	60					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2817115	2817115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2817115C>T	uc002crk.2	+	11	7135	c.6586C>T	c.(6586-6588)CCT>TCT	p.P2196S	SRRM2_uc002crj.1_Missense_Mutation_p.P2100S|SRRM2_uc002crl.1_Missense_Mutation_p.P2196S|SRRM2_uc010bsu.1_Missense_Mutation_p.P2100S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	2196	Ala-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CGCTCGGCCTCCTCCGTCCAT	0.577													5	80					0	0	1	0	0
FLYWCH1	84256	broad.mit.edu	37	16	2987314	2987314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2987314C>T	uc002csd.2	+	7	2069	c.1706C>T	c.(1705-1707)CCG>CTG	p.P569L	FLYWCH1_uc002csb.2_Missense_Mutation_p.P568L|FLYWCH1_uc002csc.2_Missense_Mutation_p.P568L|FLYWCH1_uc010bsv.2_Missense_Mutation_p.P293L|FLYWCH1_uc002cse.2_Missense_Mutation_p.P24L	NM_032296	NP_115672	Q4VC44	FWCH1_HUMAN	FLYWCH-type zinc finger 1 isoform a	569						nucleus	DNA binding|metal ion binding				0						TGCCACCCACCGGACCTGGGC	0.726													14	5					0	0	1	0	0
MMP25	64386	broad.mit.edu	37	16	3100450	3100450	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:3100450G>A	uc002cth.2	+	4	801	c.564G>A	c.(562-564)TTG>TTA	p.L188L	MMP25_uc002cti.1_Silent_p.L124L	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	188					inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						TCGACGGGTTGGGGGGCACCC	0.602													35	22					0	0	1	0	0
ZNF205	7755	broad.mit.edu	37	16	3168911	3168911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:3168911C>T	uc002cub.2	+	6	625	c.490C>T	c.(490-492)CCC>TCC	p.P164S	ZNF205_uc002cua.2_Missense_Mutation_p.P164S	NM_001042428	NP_001035893	O95201	ZN205_HUMAN	zinc finger protein 205	164	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						GGCAGGCTTTCCCTTCAGCAG	0.637													56	48					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3297131	3297131	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:3297131A>G	uc002cun.1	-	5	1512	c.1472T>C	c.(1471-1473)GTT>GCT	p.V491A		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	491					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	GATCTGCCCAACCATCTGGCC	0.582													11	192					0	0	1	0	0
CLUAP1	23059	broad.mit.edu	37	16	3562382	3562382	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:3562382G>A	uc002cvk.1	+	5	505	c.400_splice	c.e5-1	p.I134_splice	CLUAP1_uc002cvj.1_Splice_Site_p.I134_splice|CLUAP1_uc002cvl.1_Splice_Site_p.I134_splice|CLUAP1_uc002cvm.1_Intron	NM_015041	NP_055856	Q96AJ1	CLUA1_HUMAN	clusterin associated protein 1 isoform 1							nucleus	protein binding			ovary(1)|breast(1)|pancreas(1)	3						TTTCCTTCCAGATTGCAGATT	0.323													34	28					0	0	1	0	0
NLRC3	197358	broad.mit.edu	37	16	3604304	3604304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:3604304C>T	uc010btn.2	-	9	2617	c.2206G>A	c.(2206-2208)GAT>AAT	p.D736N	NLRC3_uc010bto.1_5'UTR	NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	736	LRR 5.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						GCACCATCATCCCTAACGGTG	0.587													4	40					0	0	1	0	0
PPL	5493	broad.mit.edu	37	16	4945320	4945320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:4945320C>T	uc002cyd.1	-	11	1274	c.1184G>A	c.(1183-1185)CGG>CAG	p.R395Q		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	395	Spectrin 2.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CGGAGTCTCCCGGCGGTACTT	0.612													10	53					0	0	1	0	0
C16orf89	146556	broad.mit.edu	37	16	5115762	5115762	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:5115762G>A	uc010bud.2	-	1	350	c.262C>T	c.(262-264)CTA>TTA	p.L88L	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Silent_p.L88L	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	50						extracellular region				ovary(1)|skin(1)	2						CTCTGTTCTAGGAAGACGGTG	0.587													16	75					0	0	1	0	0
A2BP1	54715	broad.mit.edu	37	16	7568264	7568264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:7568264C>T	uc002cys.2	+	5	1131	c.143C>T	c.(142-144)CCC>CTC	p.P48L	A2BP1_uc010buf.1_Missense_Mutation_p.P48L|A2BP1_uc002cyr.1_Missense_Mutation_p.P48L|A2BP1_uc002cyt.2_Missense_Mutation_p.P48L|A2BP1_uc010uxz.1_Missense_Mutation_p.P91L|A2BP1_uc010uya.1_Missense_Mutation_p.P84L|A2BP1_uc002cyv.1_Missense_Mutation_p.P48L|A2BP1_uc010uyb.1_Missense_Mutation_p.P48L|A2BP1_uc002cyw.2_Missense_Mutation_p.P68L|A2BP1_uc002cyy.2_Missense_Mutation_p.P68L|A2BP1_uc002cyx.2_Missense_Mutation_p.P68L|A2BP1_uc010uyc.1_Missense_Mutation_p.P68L	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	48					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		CATCCCCACCCCGCGCCAGAG	0.662													93	114					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857534	9857534	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:9857534C>A	uc002czo.3	-	13	4415	c.3867G>T	c.(3865-3867)CAG>CAT	p.Q1289H	GRIN2A_uc010uym.1_Missense_Mutation_p.Q1289H|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1289	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGTAGGAATGCTGACGGCTAA	0.532													4	80					0.014758	0.0147981	1	1	0
ATF7IP2	80063	broad.mit.edu	37	16	10524907	10524907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:10524907G>A	uc002czu.2	+	3	657	c.430G>A	c.(430-432)GAT>AAT	p.D144N	ATF7IP2_uc002czv.2_Missense_Mutation_p.D144N|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.D144N|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TTCTGAAAACGATTCTGAGCA	0.438													17	65					0	0	1	0	0
TEKT5	146279	broad.mit.edu	37	16	10721542	10721542	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:10721542G>C	uc002czz.1	-	7	1428	c.1356C>G	c.(1354-1356)CAC>CAG	p.H452Q		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	452					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TGGCGAGCTCGTGCTCCAGCC	0.632													39	43					0	0	1	0	0
CLEC16A	23274	broad.mit.edu	37	16	11051708	11051708	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:11051708C>A	uc002dao.2	+	2	380	c.150C>A	c.(148-150)ACC>ACA	p.T50T	CLEC16A_uc002dan.3_Silent_p.T50T	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	50										ovary(1)|central_nervous_system(1)	2						TAGTGGAGACCATCCGTTCCA	0.413													16	72					1.99824e-07	2.01051e-07	1	1	0
TXNDC11	51061	broad.mit.edu	37	16	11785865	11785865	+	Missense_Mutation	SNP	C	T	T	rs147703115		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:11785865C>T	uc010buu.1	-	9	1324	c.1262G>A	c.(1261-1263)CGG>CAG	p.R421Q	TXNDC11_uc002dbg.1_Missense_Mutation_p.R394Q	NM_015914	NP_056998	Q6PKC3	TXD11_HUMAN	thioredoxin domain containing 11	421					cell redox homeostasis	endoplasmic reticulum membrane|integral to membrane					0						ATCCACCCGCCGCAGGTGCTG	0.612													31	38					0	0	1	0	0
KIAA0430	9665	broad.mit.edu	37	16	15711387	15711387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:15711387C>T	uc002ddr.2	-	14	2919	c.2726G>A	c.(2725-2727)GGA>GAA	p.G909E	KIAA0430_uc002ddq.2_Missense_Mutation_p.G743E|KIAA0430_uc010uzv.1_Missense_Mutation_p.G905E|KIAA0430_uc010uzw.1_Missense_Mutation_p.G908E	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	908						peroxisome	nucleotide binding|RNA binding				0						CAACTTGTGTCCAAACCTAAA	0.408													13	30					0	0	1	0	0
TMC7	79905	broad.mit.edu	37	16	19073159	19073159	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:19073159G>A	uc002dfq.2	+	16	2296	c.2166G>A	c.(2164-2166)AGG>AGA	p.R722R	TMC7_uc010vap.1_Silent_p.R612R	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	722	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						GGGACATGAGGAACTAACTAG	0.423													18	38					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19485449	19485449	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:19485449C>T	uc002dgc.3	+	12	2690	c.1941C>T	c.(1939-1941)TTC>TTT	p.F647F	TMC5_uc010vaq.1_Silent_p.F595F|TMC5_uc002dgb.3_Silent_p.F647F|TMC5_uc010var.1_Silent_p.F647F|TMC5_uc002dgd.1_Silent_p.F401F|TMC5_uc002dge.3_Silent_p.F401F|TMC5_uc002dgf.3_Silent_p.F330F|TMC5_uc002dgg.3_Silent_p.F288F	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	647	Extracellular (Potential).					integral to membrane				skin(1)	1						CCCTGCAGTTCCTGAAGACAC	0.522													54	173					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19490827	19490827	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:19490827C>T	uc002dgc.3	+	14	2993	c.2244C>T	c.(2242-2244)TCC>TCT	p.S748S	TMC5_uc010vaq.1_Silent_p.S696S|TMC5_uc002dgb.3_Silent_p.S748S|TMC5_uc010var.1_Silent_p.S748S|TMC5_uc002dgd.1_Silent_p.S502S|TMC5_uc002dge.3_Silent_p.S502S|TMC5_uc002dgf.3_Silent_p.S431S|TMC5_uc002dgg.3_Silent_p.S389S	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	748	Helical; (Potential).					integral to membrane				skin(1)	1						TAGTCAATTCCTTCCTGGGGG	0.463													75	103					0	0	1	0	0
TMC5	79838	broad.mit.edu	37	16	19498649	19498649	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:19498649G>A	uc002dgc.3	+	17	3322	c.2573_splice	c.e17+1	p.R858_splice	TMC5_uc010vaq.1_Splice_Site_p.R806_splice|TMC5_uc002dgb.3_Splice_Site_p.R858_splice|TMC5_uc010var.1_Splice_Site_p.R858_splice|TMC5_uc002dgd.1_Splice_Site_p.R612_splice|TMC5_uc002dge.3_Splice_Site_p.R612_splice|TMC5_uc002dgf.3_Splice_Site_p.R541_splice|TMC5_uc002dgg.3_Splice_Site_p.R499_splice	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a							integral to membrane				skin(1)	1						CCATCTGGAGGTAGGAGAAGG	0.418													13	48					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043818	20043818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:20043818C>T	uc002dgu.1	-	2	463	c.301G>A	c.(301-303)GAC>AAC	p.D101N	GPR139_uc010vaw.1_Missense_Mutation_p.D8N	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	101	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)	2						ATGATCTTGTCGGGGACCTGA	0.483													16	30					0	0	1	0	0
GPR139	124274	broad.mit.edu	37	16	20043849	20043849	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:20043849G>A	uc002dgu.1	-	2	432	c.270C>T	c.(268-270)TTC>TTT	p.F90F	GPR139_uc010vaw.1_5'UTR	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	90	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(2)	2						TGTTCAAGATGAAATCTTCCA	0.463													10	30					0	0	1	0	0
GP2	2813	broad.mit.edu	37	16	20329515	20329515	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:20329515G>A	uc002dgv.2	-	8	1337	c.1254C>T	c.(1252-1254)ATC>ATT	p.I418I	GP2_uc002dgw.2_Silent_p.I415I|GP2_uc002dgx.2_Silent_p.I271I|GP2_uc002dgy.2_Silent_p.I268I	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	418	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						ACCTGTTTCTGATGATGAAAT	0.458													19	100					0	0	1	0	0
PDILT	204474	broad.mit.edu	37	16	20371928	20371928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:20371928C>T	uc002dhc.1	-	11	1691	c.1468G>A	c.(1468-1470)GAA>AAA	p.E490K		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	490					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						ATGTGGCTTTCCAGGAAGTCA	0.468													44	190					0	0	1	0	0
ACSM5	54988	broad.mit.edu	37	16	20429495	20429495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:20429495G>A	uc002dhe.2	+	3	466	c.319G>A	c.(319-321)GGG>AGG	p.G107R	ACSM5_uc002dhd.1_Missense_Mutation_p.G107R	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	107					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CAATGTGCTGGGGGGTGCATG	0.612													21	51					0	0	1	0	0
ACSM3	6296	broad.mit.edu	37	16	20781555	20781555	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:20781555C>A	uc002dhr.2	+	2	386	c.199C>A	c.(199-201)CAA>AAA	p.Q67K	ACSM3_uc002dhq.2_Missense_Mutation_p.Q67K|ACSM3_uc010vba.1_Missense_Mutation_p.Q59K	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	67					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						TGTCCTGGACCAATGGACTGA	0.338													18	22					1.90627e-21	1.9405e-21	1	1	0
DNAH3	55567	broad.mit.edu	37	16	20966157	20966157	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:20966157C>T	uc010vbe.1	-	55	11049	c.11049G>A	c.(11047-11049)GAG>GAA	p.E3683E	DNAH3_uc010vbd.1_Silent_p.E1118E	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3683	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGTTTCTTCTCTCTTGAACAA	0.493													21	111					0	0	1	0	0
UQCRC2	7385	broad.mit.edu	37	16	21991911	21991911	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:21991911G>C	uc002djx.2	+	13	1304	c.1168G>C	c.(1168-1170)GAG>CAG	p.E390Q	UQCRC2_uc002djy.2_Intron|UQCRC2_uc010bxa.2_RNA	NM_003366	NP_003357	P22695	QCR2_HUMAN	ubiquinol-cytochrome c reductase core protein II	390					aerobic respiration|oxidative phosphorylation|proteolysis|respiratory electron transport chain|transport		metalloendopeptidase activity|zinc ion binding			large_intestine(2)	2				GBM - Glioblastoma multiforme(48;0.0264)		GGAGTCTTCTGAGTGTTTCCT	0.443													16	88					0	0	1	0	0
SCNN1G	6340	broad.mit.edu	37	16	23226449	23226449	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:23226449C>T	uc002dlm.1	+	13	1748	c.1609C>T	c.(1609-1611)CTG>TTG	p.L537L		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	537	Helical; (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	CCAGCTGGGCCTGTGGATGAG	0.547													13	31					0	0	1	0	0
SCNN1B	6338	broad.mit.edu	37	16	23366772	23366772	+	Silent	SNP	C	T	T	rs141889317		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:23366772C>T	uc002dln.2	+	4	914	c.738C>T	c.(736-738)ATC>ATT	p.I246I		NM_000336	NP_000327	P51168	SCNNB_HUMAN	sodium channel, nonvoltage-gated 1, beta	246	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(3)|breast(2)|large_intestine(1)|pancreas(1)	7				GBM - Glioblastoma multiforme(48;0.0465)	Amiloride(DB00594)|Triamterene(DB00384)	AGCAGATGATCCTGGCCTGCC	0.527													43	59					0	0	1	0	0
ERN2	10595	broad.mit.edu	37	16	23718360	23718360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:23718360G>A	uc002dma.3	-	5	660	c.491C>T	c.(490-492)CCC>CTC	p.P164L	ERN2_uc010bxp.2_Missense_Mutation_p.P164L|ERN2_uc010bxq.1_5'UTR	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	116	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		GCTGCGGCAGGGAGAGGCATG	0.552													33	44					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251334	25251334	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:25251334G>A	uc002dod.3	-	7	3114	c.2707C>T	c.(2707-2709)CGA>TGA	p.R903*	ZKSCAN2_uc010vcl.1_Nonsense_Mutation_p.R699*	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	903	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		CGATGTTCTCGAAATCTCGTA	0.458													5	36					0	0	1	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25251393	25251393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:25251393C>T	uc002dod.3	-	7	3055	c.2648G>A	c.(2647-2649)GGG>GAG	p.G883E	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.G679E	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	883					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		GGGATTCTCCCCAGTGTGAAC	0.478													7	52					0	0	1	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147315	26147315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:26147315G>A	uc002dof.2	+	2	1509	c.1117G>A	c.(1117-1119)GAT>AAT	p.D373N		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	373	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		CAAAGTACAGGATTTTCTAGG	0.507													14	40					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27445715	27445715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:27445715G>A	uc002doq.1	+	3	330	c.97G>A	c.(97-99)GTC>ATC	p.V33I	IL21R_uc002dor.1_Missense_Mutation_p.V33I|IL21R_uc002dos.1_Missense_Mutation_p.V33I	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	33	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CCTCCAGACGGTCATCTGCAT	0.632			T	BCL6	NHL								10	57					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27448861	27448862	+	Missense_Mutation	DNP	AG	CT	CT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:27448861_27448862AG>CT	uc002doq.1	+	4	438_439	c.205_206AG>CT	c.(205-207)AGG>CTG	p.R69L	IL21R_uc002dor.1_Missense_Mutation_p.R69L|IL21R_uc002dos.1_Missense_Mutation_p.R69L	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	69	Extracellular (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CAGCCTCCACAGGTCGGCCCAC	0.574			T	BCL6	NHL								40	58					0	0	1	0	0
IL21R	50615	broad.mit.edu	37	16	27457401	27457401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:27457401G>A	uc002doq.1	+	8	1092	c.859G>A	c.(859-861)GAC>AAC	p.D287N	IL21R_uc002dor.1_Missense_Mutation_p.D287N|IL21R_uc002dos.1_Missense_Mutation_p.D287N	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	287	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CTGCAGCGGAGACTTCAAGGT	0.652			T	BCL6	NHL								15	30					0	0	1	0	0
CLN3	1201	broad.mit.edu	37	16	28499933	28499933	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:28499933G>A	uc002dpo.2	-	4	596	c.273C>T	c.(271-273)GAC>GAT	p.D91D	uc010vct.1_Intron|CLN3_uc002dpl.2_Intron|CLN3_uc010vcu.1_Missense_Mutation_p.T18I|CLN3_uc002dpn.2_Silent_p.D91D|CLN3_uc002dpm.2_Silent_p.D37D|CLN3_uc010vcv.1_Intron|CLN3_uc010byd.2_Silent_p.D91D|CLN3_uc002dpp.2_Silent_p.D91D|CLN3_uc002dpt.1_Missense_Mutation_p.T18I|CLN3_uc002dpq.1_Silent_p.D91D|CLN3_uc010bye.1_Silent_p.D91D|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Intron|CLN3_uc002dpu.1_Silent_p.D37D|CLN3_uc002dpw.1_Silent_p.D37D|CLN3_uc010vcw.1_Silent_p.D37D|CLN3_uc002dqa.2_Silent_p.D142D|CLN3_uc010vcx.1_Missense_Mutation_p.T18I|CLN3_uc002dpx.1_Intron|CLN3_uc002dpy.1_Silent_p.D34D|CLN3_uc002dpz.1_Intron	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	91					amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						CAGAGTTGCAGTCAAATCGTG	0.577													86	113					0	0	1	0	0
APOB48R	55911	broad.mit.edu	37	16	28509498	28509498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:28509498C>T	uc002dqb.1	+	4	3035	c.3025C>T	c.(3025-3027)CGT>TGT	p.R1009C	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.R547C	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	1009					cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCCCTCTTTTCGTCGGACTCC	0.682													5	3					0	0	1	0	0
SULT1A1	6817	broad.mit.edu	37	16	28620125	28620125	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:28620125C>G	uc002dqi.2	-	1	525	c.52G>C	c.(52-54)GTC>CTC	p.V18L	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.V18L|SULT1A1_uc002dqk.2_Missense_Mutation_p.V18L|SULT1A1_uc002dql.2_Missense_Mutation_p.V18L|SULT1A1_uc002dqm.2_Intron|SULT1A1_uc002dqn.2_Missense_Mutation_p.V109L|SULT1A1_uc002dqo.2_Missense_Mutation_p.V18L|SULT1A1_uc002dqp.2_Missense_Mutation_p.V18L	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	18					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						ATGAGCGGGACCCCCTTCACG	0.632													10	90					0	0	1	0	0
ATP2A1	487	broad.mit.edu	37	16	28906196	28906197	+	Silent	DNP	CC	TT	TT	rs145073993		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:28906196_28906197CC>TT	uc002dro.1	+	12	1525_1526	c.1341_1342CC>TT	c.(1339-1344)ACCCTG>ACTTTG	p.447_448TL>TL	uc010vct.1_Intron|ATP2A1_uc002drn.1_Silent_p.447_448TL>TL|ATP2A1_uc002drp.1_Silent_p.322_323TL>TL	NM_173201	NP_775293	O14983	AT2A1_HUMAN	ATPase, Ca++ transporting, fast twitch 1 isoform	447_448	Cytoplasmic (By similarity).				apoptosis in response to endoplasmic reticulum stress|apoptotic mitochondrial changes|ATP biosynthetic process|calcium ion import|elevation of endoplasmic reticulum calcium ion concentration|elevation of mitochondrial calcium ion concentration|maintenance of mitochondrion location|negative regulation of striated muscle contraction|platelet activation|positive regulation of fast-twitch skeletal muscle fiber contraction|reduction of endoplasmic reticulum calcium ion concentration|relaxation of skeletal muscle|response to endoplasmic reticulum stress	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|H zone|I band|microsome|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum|sarcoplasmic reticulum membrane	ATP binding|ATP binding|calcium ion binding|calcium ion binding|calcium-transporting ATPase activity|protein homodimerization activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CACTCACCACCCTGGTGGAGAA	0.599													23	33					0	0	1	0	0
DOC2A	8448	broad.mit.edu	37	16	30020339	30020339	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:30020339C>T	uc002dvm.2	-	5	605	c.505G>A	c.(505-507)GAC>AAC	p.D169N	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|DOC2A_uc002dvl.2_Missense_Mutation_p.D169N|DOC2A_uc002dvn.2_Missense_Mutation_p.D169N|DOC2A_uc010vef.1_RNA|DOC2A_uc002dvo.2_Missense_Mutation_p.D169N|DOC2A_uc002dvp.2_Missense_Mutation_p.D169N|DOC2A_uc002dvq.2_Missense_Mutation_p.D169N	NM_003586	NP_003577	Q14183	DOC2A_HUMAN	double C2-like domains, alpha	169	C2 1.				nervous system development|regulation of calcium ion-dependent exocytosis	cell junction|lysosome|synaptic vesicle membrane|synaptosome	calcium-dependent phospholipid binding|protein binding|transporter activity			ovary(2)	2						TGCGTGATGTCGTCATCTGTG	0.557													16	81					0	0	1	0	0
CORO1A	11151	broad.mit.edu	37	16	30198725	30198725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:30198725G>A	uc002dww.2	+	6	781	c.659G>A	c.(658-660)GGG>GAG	p.G220E	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CORO1A_uc010bzq.2_Missense_Mutation_p.G220E|CORO1A_uc010bzr.2_Missense_Mutation_p.G220E|CORO1A_uc002dwx.2_Missense_Mutation_p.G114E|CORO1A_uc002dwy.1_Missense_Mutation_p.G64E|LOC606724_uc002dwz.1_5'Flank	NM_007074	NP_009005	P31146	COR1A_HUMAN	coronin, actin binding protein, 1A	220	WD 5.				cell-substrate adhesion|innate immune response|leukocyte chemotaxis|negative regulation of actin nucleation|phagolysosome assembly|positive chemotaxis|regulation of cell shape|uropod organization	actin filament|cortical actin cytoskeleton|lamellipodium|phagocytic cup|phagocytic vesicle membrane	actin filament binding|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein homodimerization activity				0						CCCCACGAGGGGACCCGGCCC	0.667													30	35					0	0	1	0	0
ITGAM	3684	broad.mit.edu	37	16	31332896	31332896	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:31332896G>A	uc002ebq.2	+	16	2048	c.1950G>A	c.(1948-1950)GAG>GAA	p.E650E	ITGAM_uc002ebr.2_Silent_p.E651E|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Silent_p.E56E|ITGAM_uc002ebs.1_Silent_p.E56E	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	650	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						AAGCCGGAGAGGTCAGAGTCT	0.507													31	113					0	0	1	0	0
ABCC11	85320	broad.mit.edu	37	16	48234384	48234384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:48234384C>T	uc002eff.1	-	14	2235	c.1885G>A	c.(1885-1887)GAG>AAG	p.E629K	ABCC11_uc002efg.1_Missense_Mutation_p.E629K|ABCC11_uc002efh.1_Missense_Mutation_p.E629K|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	629	ABC transporter 1.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AGGCCCCGCTCTCCAATCTGC	0.597									Cerumen_Type				11	31					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49669702	49669702	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:49669702G>A	uc002efs.2	-	5	3659	c.3361C>T	c.(3361-3363)CGT>TGT	p.R1121C	ZNF423_uc010vgn.1_Missense_Mutation_p.R1004C	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	1121	C2H2-type 26.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TCGGGGCAACGGAGGCCGGCA	0.721													30	95					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49671547	49671547	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:49671547G>C	uc002efs.2	-	5	1814	c.1516C>G	c.(1516-1518)CCC>GCC	p.P506A	ZNF423_uc010vgn.1_Missense_Mutation_p.P389A	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	506					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TTGGCGTTGGGGCCGCAGTGG	0.572													21	35					0	0	1	0	0
ADCY7	113	broad.mit.edu	37	16	50326721	50326721	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:50326721C>T	uc002egd.1	+	4	940	c.672C>T	c.(670-672)ATC>ATT	p.I224I	ADCY7_uc002egb.1_Silent_p.I224I|ADCY7_uc002egc.1_Silent_p.I224I	NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	224	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	AGCTGCGCATCGAGAAGCGCC	0.592													30	112					0	0	1	0	0
NOD2	64127	broad.mit.edu	37	16	50744602	50744602	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:50744602G>A	uc002egm.1	+	4	885	c.780G>A	c.(778-780)TGG>TGA	p.W260*	NOD2_uc010cbk.1_Nonsense_Mutation_p.W233*|NOD2_uc002egl.1_Nonsense_Mutation_p.W38*|NOD2_uc010cbl.1_Nonsense_Mutation_p.W38*|NOD2_uc010cbm.1_Nonsense_Mutation_p.W38*|NOD2_uc010cbn.1_RNA|NOD2_uc010cbo.1_RNA|NOD2_uc010cbp.1_5'Flank|NOD2_uc010cbq.1_5'Flank|NOD2_uc010cbr.1_5'Flank	NM_022162	NP_071445	Q9HC29	NOD2_HUMAN	nucleotide-binding oligomerization domain	260					activation of MAPK activity involved in innate immune response|cytokine production involved in immune response|detection of bacterium|detection of muramyl dipeptide|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of macrophage apoptosis|nucleotide-binding oligomerization domain containing 2 signaling pathway|positive regulation of B cell activation|positive regulation of dendritic cell antigen processing and presentation|positive regulation of epithelial cell proliferation|positive regulation of ERK1 and ERK2 cascade|positive regulation of gamma-delta T cell activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-10 production|positive regulation of interleukin-17 production|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of Notch signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of prostaglandin-E synthase activity|positive regulation of prostaglandin-endoperoxide synthase activity|positive regulation of stress-activated MAPK cascade|positive regulation of tumor necrosis factor production|positive regulation of type 2 immune response|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|plasma membrane|vesicle	ATP binding|CARD domain binding|muramyl dipeptide binding|protein kinase binding			ovary(3)|skin(1)	4		all_cancers(37;0.0156)				TGGAGGTCTGGGCAGATGTGG	0.607													9	22					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51173698	51173698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:51173698G>A	uc010vgs.1	-	2	2466	c.2435C>T	c.(2434-2436)TCC>TTC	p.S812F	SALL1_uc010vgr.1_Missense_Mutation_p.S715F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	812					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CTCATCAAAGGAACCTGTGTC	0.507													61	91					0	0	1	0	0
SALL1	6299	broad.mit.edu	37	16	51175914	51175914	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:51175914G>A	uc010vgs.1	-	2	250	c.219C>T	c.(217-219)ATC>ATT	p.I73I	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	73					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TTTCATTTACGATTAAAACTA	0.448													29	101					0	0	1	0	0
TOX3	27324	broad.mit.edu	37	16	52473800	52473800	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:52473800G>A	uc002egw.2	-	7	1239	c.1068C>T	c.(1066-1068)CTC>CTT	p.L356L	TOX3_uc010vgt.1_Silent_p.L351L|TOX3_uc010vgu.1_Silent_p.L356L	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	356					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						TGTTGAGAAGGAGAGAGGATG	0.527													26	90					0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	53404654	53404654	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:53404654C>T	uc002ehh.2	-	1		c.229G>A								Homo sapiens mRNA; cDNA DKFZp313P036 (from clone DKFZp313P036).																		ATCATCTTTTCGTTCCTCTTC	0.333													4	10					0	0	1	0	0
LPCAT2	54947	broad.mit.edu	37	16	55562455	55562455	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:55562455T>C	uc002eie.3	+	3	659	c.478T>C	c.(478-480)TTA>CTA	p.L160L		NM_017839	NP_060309	Q7L5N7	PCAT2_HUMAN	lysophosphatidylcholine acyltransferase 2	160	Lumenal (Potential).				cellular membrane organization|platelet activating factor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|Golgi stack|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding				0						TGTAGCTGGGTTACCTTCTAT	0.403													58	75					0	0	1	0	0
NLRC5	84166	broad.mit.edu	37	16	57073707	57073707	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:57073707C>T	uc002ekk.1	+	16	3041	c.2816C>T	c.(2815-2817)ACT>ATT	p.T939I	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.T688I|NLRC5_uc002ekl.2_Missense_Mutation_p.T744I|NLRC5_uc002ekm.2_Missense_Mutation_p.T744I|NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_5'Flank|NLRC5_uc002ekp.1_5'Flank	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	939	LRR 7.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CAGCACAAAACTGTGATCTTC	0.463													79	108					0	0	1	0	0
CCDC102A	92922	broad.mit.edu	37	16	57552640	57552640	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:57552640T>G	uc002elw.2	-	5	1148	c.935A>C	c.(934-936)AAG>ACG	p.K312T		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	312	Potential.									ovary(1)	1						GTGCGCCTCCTTCAGGATGCT	0.637													6	6					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57735982	57735982	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:57735982G>A	uc002emi.2	+	5	728	c.639G>A	c.(637-639)CTG>CTA	p.L213L	CCDC135_uc002emj.2_Silent_p.L213L|CCDC135_uc002emk.2_Intron	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	213						cytoplasm				central_nervous_system(1)	1						ACGGCTCGCTGGACCTGTGCC	0.582													11	77					0	0	1	0	0
CCDC135	84229	broad.mit.edu	37	16	57761217	57761217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:57761217G>A	uc002emi.2	+	15	2181	c.2092G>A	c.(2092-2094)GAG>AAG	p.E698K	CCDC135_uc002emj.2_Missense_Mutation_p.E698K|CCDC135_uc002emk.2_Missense_Mutation_p.E633K	NM_032269	NP_115645	Q8IY82	CC135_HUMAN	coiled-coil domain containing 135	698	Potential.					cytoplasm				central_nervous_system(1)	1						TCAGGTGCTGGAGATTCTGAA	0.413													28	107					0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	58001157	58001157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:58001157G>A	uc002emt.2	-	2	99	c.34C>T	c.(34-36)CCC>TCC	p.P12S	CNGB1_uc010cdh.2_Missense_Mutation_p.P12S|CNGB1_uc002emu.2_Missense_Mutation_p.P12S	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	12					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						GTCCCTGGGGGCTGAGGCAGC	0.602													29	34					0	0	1	0	0
SLC38A7	55238	broad.mit.edu	37	16	58713876	58713876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:58713876G>A	uc002eod.1	-	3	548	c.155C>T	c.(154-156)TCC>TTC	p.S52F	SLC38A7_uc002eob.1_RNA|SLC38A7_uc002eoc.1_Missense_Mutation_p.S52F|SLC38A7_uc010vil.1_Intron|SLC38A7_uc002eoe.1_Missense_Mutation_p.S52F	NM_018231	NP_060701	Q9NVC3	S38A7_HUMAN	solute carrier family 38, member 7	52					amino acid transport|sodium ion transport	integral to membrane				ovary(1)	1						CCCAAGTGTGGAAGTGGTGCC	0.657													10	10					0	0	1	0	0
CDH8	1006	broad.mit.edu	37	16	61851436	61851436	+	Silent	SNP	G	A	A	rs140336916	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:61851436G>A	uc002eog.1	-	7	1476	c.1224C>T	c.(1222-1224)TCC>TCT	p.S408S	CDH8_uc002eoh.2_Silent_p.S177S	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	408	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GCCCAATCACGGAGTTTAGAG	0.443													26	35					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66424473	66424473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:66424473G>A	uc002eom.3	+	6	1105	c.949G>A	c.(949-951)GGC>AGC	p.G317S	CDH5_uc002eon.1_Missense_Mutation_p.G317S	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	317	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		CCACAACGAGGGCATCATCAA	0.572													41	48					0	0	1	0	0
CDH5	1003	broad.mit.edu	37	16	66436827	66436827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:66436827G>A	uc002eom.3	+	12	2266	c.2110G>A	c.(2110-2112)GAG>AAG	p.E704K		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	704	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		AGGGCCCGGGGAGATGGCAGC	0.612													18	9					0	0	1	0	0
DYNC1LI2	1783	broad.mit.edu	37	16	66785211	66785211	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:66785211G>A	uc002eqb.1	-	2	177	c.146C>T	c.(145-147)TCC>TTC	p.S49F	DYNC1LI2_uc010vis.1_Missense_Mutation_p.S49F|DYNC1LI2_uc010vit.1_Missense_Mutation_p.S49F|DYNC1LI2_uc010viu.1_Missense_Mutation_p.S49F	NM_006141	NP_006132	O43237	DC1L2_HUMAN	dynein, cytoplasmic, light intermediate	49					transport	centrosome|cytoplasmic dynein complex|microtubule	ATP binding|motor activity			central_nervous_system(3)|skin(1)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0907)|Epithelial(162;0.212)		CGGCAGCTTGGACCTGGCGCG	0.582													29	41					0	0	1	0	0
E2F4	1874	broad.mit.edu	37	16	67228832	67228832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:67228832C>T	uc002erz.2	+	6	820	c.757C>T	c.(757-759)CCT>TCT	p.P253S		NM_001950	NP_001941	Q16254	E2F4_HUMAN	E2F transcription factor 4	253					G1 phase of mitotic cell cycle	transcription factor complex	DNA binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000697)|Epithelial(162;0.00303)|all cancers(182;0.0325)		CACTGCTGTCCCTGGCAGTGC	0.582													38	47					0	0	1	0	0
ELMO3	79767	broad.mit.edu	37	16	67237733	67237733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:67237733C>T	uc002esa.2	+	20	2318	c.2275C>T	c.(2275-2277)CCC>TCC	p.P759S	ELMO3_uc002esb.2_Missense_Mutation_p.P742S|ELMO3_uc002esc.2_Missense_Mutation_p.P593S|uc010vjf.1_5'Flank|MIR328_hsa-mir-328|MI0000804_5'Flank	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	706	SH3-binding.				apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		GCCCCCACCCCCCACCAACTT	0.642													12	34					0	0	1	0	0
LRRC29	26231	broad.mit.edu	37	16	67242286	67242286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:67242286G>A	uc002esd.2	-	2	1111	c.214C>T	c.(214-216)CTC>TTC	p.L72F	LRRC29_uc002ese.2_Missense_Mutation_p.L72F|LRRC29_uc002esf.2_Missense_Mutation_p.L72F|LRRC29_uc002esg.2_Missense_Mutation_p.L72F	NM_012163	NP_036295	Q8WV35	LRC29_HUMAN	F-box and leucine-rich repeat protein 9	72	LRR 2.										0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		CGCAGCGTGAGCAGGGAGGGG	0.637													55	49					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67681469	67681469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:67681469G>A	uc002etn.2	+	11	955	c.835G>A	c.(835-837)GAG>AAG	p.E279K	RLTPR_uc010cel.1_Missense_Mutation_p.E279K|RLTPR_uc010vjr.1_Missense_Mutation_p.E279K	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	279	LRR 4.									breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		TGGGCTGCGGGAGCTCAGCCT	0.657													7	13					0	0	1	0	0
C16orf48	84080	broad.mit.edu	37	16	67697082	67697082	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:67697082G>A	uc002etw.1	-	7	1306	c.1023C>T	c.(1021-1023)TTC>TTT	p.F341F	ACD_uc002etp.3_5'Flank|ACD_uc002etq.3_5'Flank|ACD_uc002etr.3_5'Flank|ACD_uc010vjt.1_5'Flank|C16orf48_uc002etv.1_Silent_p.F223F|C16orf48_uc010cem.1_3'UTR	NM_032140	NP_115516	Q9H0I2	CP048_HUMAN	hypothetical protein LOC84080	341						microtubule cytoskeleton	protein binding				0		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		CCATCTTCACGAAGACTTTGG	0.592													13	41					0	0	1	0	0
TMED6	146456	broad.mit.edu	37	16	69385509	69385509	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:69385509G>A	uc002exc.1	-	1	181	c.148C>T	c.(148-150)CCA>TCA	p.P50S		NM_144676	NP_653277	Q8WW62	TMED6_HUMAN	transmembrane emp24 protein transport domain	50	Lumenal (Potential).				transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1						GTGCCTCCTGGAGGTATCATG	0.522													29	118					0	0	1	0	0
SF3B3	23450	broad.mit.edu	37	16	70590141	70590141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:70590141G>A	uc002ezf.2	+	14	1981	c.1770G>A	c.(1768-1770)ATG>ATA	p.M590I		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	590					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				TGGTGTGCATGAGTCTGGCCA	0.537													35	149					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70891662	70891662	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:70891662C>T	uc002ezr.2	-	72	12366	c.12238G>A	c.(12238-12240)GAA>AAA	p.E4080K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	4081										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ATGAGAGGTTCGGTAGTTTTG	0.483													19	84					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70896078	70896078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:70896078C>T	uc002ezr.2	-	69	11775	c.11647G>A	c.(11647-11649)GAG>AAG	p.E3883K	HYDIN_uc010cfy.2_RNA	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3884										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGGGAACCCTCGGCCCAGTGG	0.562													5	34					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	70926412	70926412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:70926412C>T	uc002ezr.2	-	56	9394	c.9266G>A	c.(9265-9267)GGG>GAG	p.G3089E		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3090										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGTTGAAATCCCTACAGAGTC	0.433													21	46					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71218869	71218869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:71218869C>T	uc002ezr.2	-	3	288	c.160G>A	c.(160-162)GAA>AAA	p.E54K	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.E54K|HYDIN_uc010vmc.1_Missense_Mutation_p.E71K|HYDIN_uc010vmd.1_Missense_Mutation_p.E81K|HYDIN_uc002ezw.3_Missense_Mutation_p.E71K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	54										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGGGACATTTCCTTCAGGAAC	0.408													11	49					0	0	1	0	0
DHX38	9785	broad.mit.edu	37	16	72138966	72138966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:72138966C>T	uc002fcb.2	+	16	2547	c.2192C>T	c.(2191-2193)TCC>TTC	p.S731F	DHX38_uc010vmp.1_Intron	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	731	Helicase C-terminal.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				GTGAAGCAGTCCTTGCAGGTG	0.597													8	67					0	0	1	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184530	72184530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:72184530C>T	uc002fcc.3	-	5	785	c.613G>A	c.(613-615)GAA>AAA	p.E205K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E205K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.E60K	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	205	Potential.									ovary(2)	2		Ovarian(137;0.179)				CCGCCGAGTTCCCCCTGCAAC	0.532													53	240					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72822425	72822425	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:72822425T>A	uc002fck.2	-	10	10423	c.9750A>T	c.(9748-9750)AAA>AAT	p.K3250N	ZFHX3_uc002fcl.2_Missense_Mutation_p.K2336N	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3250					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GGGGTTCCCCTTTCCCTTTGT	0.587													48	147					0	0	1	0	0
WDR59	79726	broad.mit.edu	37	16	74922121	74922121	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:74922121G>A	uc002fdh.1	-	22	2394	c.2292C>T	c.(2290-2292)CCC>CCT	p.P764P	WDR59_uc002fdf.1_Silent_p.P209P|WDR59_uc002fdg.1_Silent_p.P356P	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	764										ovary(1)|breast(1)	2						AAGGCCCAAAGGGGTTTGGTA	0.468													13	38					0	0	1	0	0
WDR59	79726	broad.mit.edu	37	16	74942837	74942837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:74942837G>A	uc002fdh.1	-	17	1783	c.1681C>T	c.(1681-1683)CGG>TGG	p.R561W	WDR59_uc002fdi.2_Missense_Mutation_p.R561W|WDR59_uc002fdg.1_Missense_Mutation_p.R153W	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	561										ovary(1)|breast(1)	2						GACACCGCCCGATGCATTGTC	0.562													35	51					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064358	78064358	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:78064358A>C	uc002ffh.3	+	3	295	c.214A>C	c.(214-216)ACT>CCT	p.T72P		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	72					skeletal system development	extracellular region	sugar binding				0						TCTCCGAGGCACTAAAGTTCA	0.413													22	79					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81134757	81134757	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:81134757G>A	uc002fgh.1	-	45	7351	c.7351C>T	c.(7351-7353)CGA>TGA	p.R2451*	PKD1L2_uc002fgf.1_Nonsense_Mutation_p.R251*|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2451	Extracellular (Potential).|Interaction with GNAS and GNAI1.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGTGCTGGTCGAGAGTGGCGA	0.582													10	46					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81232296	81232296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:81232296C>T	uc002fgh.1	-	7	1514	c.1514G>A	c.(1513-1515)GGG>GAG	p.G505E	PKD1L2_uc002fgj.2_Missense_Mutation_p.G505E	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	505	REJ.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCGGCAAATCCCAAATGGCTC	0.572													9	37					0	0	1	0	0
BCMO1	53630	broad.mit.edu	37	16	81293407	81293407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:81293407C>T	uc002fgn.1	+	3	538	c.320C>T	c.(319-321)TCC>TTC	p.S107F	BCMO1_uc002fgm.1_Missense_Mutation_p.S107F|BCMO1_uc010vnp.1_Intron	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	107					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						AACATATTTTCCAAGTAACTG	0.408													19	90					0	0	1	0	0
USP10	9100	broad.mit.edu	37	16	84778389	84778389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:84778389C>T	uc002fii.2	+	4	444	c.302C>T	c.(301-303)CCT>CTT	p.P101L	USP10_uc010voe.1_Missense_Mutation_p.P105L|USP10_uc010vof.1_Intron|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	101					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						AAAATAACCCCTGATGGTATC	0.498													30	54					0	0	1	0	0
MVD	4597	broad.mit.edu	37	16	88719738	88719738	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:88719738G>A	uc002flg.1	-	9	1099	c.1092C>T	c.(1090-1092)CCC>CCT	p.P364P	CYBA_uc002flb.2_5'Flank|CYBA_uc002fld.1_5'Flank|CYBA_uc010chx.1_5'Flank|CYBA_uc002fle.1_5'Flank|MVD_uc002flf.1_Silent_p.P233P	NM_002461	NP_002452	P53602	MVD1_HUMAN	diphosphomevalonate decarboxylase	364					cholesterol biosynthetic process|positive regulation of cell proliferation	cytosol	ATP binding|diphosphomevalonate decarboxylase activity|Hsp70 protein binding|kinase activity|protein homodimerization activity				0				BRCA - Breast invasive adenocarcinoma(80;0.0478)		TGACCCCACCGGGGGTCGGCT	0.667													3	32					0	0	1	0	0
CBFA2T3	863	broad.mit.edu	37	16	88967947	88967947	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:88967947C>T	uc002fmm.1	-	2	455	c.269G>A	c.(268-270)GGG>GAG	p.G90E	CBFA2T3_uc002fml.1_Missense_Mutation_p.G29E|CBFA2T3_uc010cif.1_Missense_Mutation_p.G29E|CBFA2T3_uc002fmn.1_Missense_Mutation_p.G90E	NM_005187	NP_005178	O75081	MTG16_HUMAN	myeloid translocation gene on chromosome 16	90	Mediates localization to the nucleus (By similarity).|Pro-rich.|Mediates interaction with PDE7A (in isoform 2).|Required for nucleolar targeting (in isoform 1).				cell proliferation|granulocyte differentiation	Golgi membrane|nucleolus|nucleoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			large_intestine(3)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(80;0.0275)		GCGTGTGGCCCCCTGGGATGC	0.687			T	RUNX1	AML								10	40					0	0	1	0	0
CDH15	1013	broad.mit.edu	37	16	89260232	89260232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:89260232C>T	uc002fmt.2	+	13	2139	c.2062C>T	c.(2062-2064)CGC>TGC	p.R688C		NM_004933	NP_004924	P55291	CAD15_HUMAN	cadherin 15 preproprotein	688	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	calcium ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0261)		GCCGCCACTTCGCAGAGATGC	0.682													3	14					0	0	1	0	0
ZNF778	197320	broad.mit.edu	37	16	89294610	89294610	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:89294610C>T	uc002fmv.2	+	6	2169	c.1830C>T	c.(1828-1830)ACC>ACT	p.T610T	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Silent_p.T568T|ZNF778_uc010vpg.1_Silent_p.T373T	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	610	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		ACATAAGAACCCACACCGGTG	0.478													17	74					0	0	1	0	0
ANKRD11	29123	broad.mit.edu	37	16	89347874	89347874	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:89347874G>A	uc002fmx.1	-	9	5537	c.5076C>T	c.(5074-5076)TCC>TCT	p.S1692S	ANKRD11_uc002fmy.1_Silent_p.S1692S|ANKRD11_uc002fnc.1_Silent_p.S1692S|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.S1649S	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1692						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		CAGGCCTGGGGGACGCAGGCA	0.637													57	71					0	0	1	0	0
ZNF276	92822	broad.mit.edu	37	16	89800407	89800407	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:89800407G>A	uc002fos.3	+	9	1532	c.1435G>A	c.(1435-1437)GAC>AAC	p.D479N	ZNF276_uc010ciq.2_Missense_Mutation_p.D265N|ZNF276_uc002fop.2_Missense_Mutation_p.D387N|ZNF276_uc002foq.3_Missense_Mutation_p.D404N|ZNF276_uc010cir.2_RNA|ZNF276_uc002for.3_Missense_Mutation_p.D265N|ZNF276_uc010cis.2_Missense_Mutation_p.D238N|ZNF276_uc002fot.3_RNA|ZNF276_uc010vpm.1_Missense_Mutation_p.D317N|ZNF276_uc010cit.1_Missense_Mutation_p.D238N	NM_001113525	NP_001106997	Q8N554	ZN276_HUMAN	zinc finger protein 276 isoform a	479	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		TTTCATGATCGACCGCTACCT	0.627													29	41					0	0	1	0	0
TIMM22	29928	broad.mit.edu	37	17	902026	902026	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:902026C>T	uc002fsc.2	+	2	272	c.246C>T	c.(244-246)GTC>GTT	p.V82V		NM_013337	NP_037469	Q9Y584	TIM22_HUMAN	translocase of inner mitochondrial membrane 22	82	Helical; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	protein transporter activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TAGGATTTGTCTTAGGAGGTG	0.473													34	30					0	0	1	0	0
SLC43A2	124935	broad.mit.edu	37	17	1478904	1478904	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:1478904G>A	uc002fsv.2	-	14	1793	c.1704C>T	c.(1702-1704)TTC>TTT	p.F568F	SLC43A2_uc002fsu.2_Silent_p.F572F	NM_152346	NP_689559	Q8N370	LAT4_HUMAN	solute carrier family 43, member 2	568					cellular nitrogen compound metabolic process|ion transport	integral to membrane|plasma membrane					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0883)		GCCACTACACGAAGGCCTCCT	0.627													18	16					0	0	1	0	0
PRPF8	10594	broad.mit.edu	37	17	1585293	1585293	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:1585293C>T	uc002fte.2	-	5	588	c.474G>A	c.(472-474)AGG>AGA	p.R158R		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	158						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TGAAATGCCTCCTATCTCTTT	0.458													20	20					0	0	1	0	0
OR3A1	4994	broad.mit.edu	37	17	3195593	3195593	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:3195593A>G	uc002fvh.1	-	1	284	c.284T>C	c.(283-285)GTT>GCT	p.V95A		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						CCCACAGGGAACTGCACGCTT	0.557													21	10					0	0	1	0	0
P2RX5	5026	broad.mit.edu	37	17	3585257	3585257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:3585257C>T	uc002fwi.2	-	10	1281	c.997G>A	c.(997-999)GAC>AAC	p.D333N	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Missense_Mutation_p.D332N|P2RX5_uc010vrx.1_Missense_Mutation_p.D273N|P2RX5_uc002fwj.2_Missense_Mutation_p.D308N|P2RX5_uc002fwk.2_Missense_Mutation_p.D332N|P2RX5_uc002fwl.2_Missense_Mutation_p.D309N	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	333	Helical; Name=2; (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						AGTACCAGGTCGCAGAAGAAA	0.418													17	9					0	0	1	0	0
GSG2	83903	broad.mit.edu	37	17	3628901	3628901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:3628901G>A	uc002fwp.2	+	1	1705	c.1672G>A	c.(1672-1674)GGG>AGG	p.G558R	ITGAE_uc002fwo.3_Intron|ITGAE_uc002fwn.3_5'Flank	NM_031965	NP_114171	Q8TF76	HASP_HUMAN	haspin	558	Protein kinase.				cell cycle|chromatin modification|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity				0						AGGCTTTATCGGGCTGAACTC	0.502													39	23					0	0	1	0	0
ITGAE	3682	broad.mit.edu	37	17	3656664	3656664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:3656664C>T	uc002fwo.3	-	14	1687	c.1588G>A	c.(1588-1590)GAC>AAC	p.D530N		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	530	Potential.|FG-GAP 5.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		AGCAAGAAGTCCGTGCTTCCA	0.562													19	16					0	0	1	0	0
ALOX15	246	broad.mit.edu	37	17	4536586	4536586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:4536586G>A	uc002fyh.2	-	10	1287	c.1273C>T	c.(1273-1275)CAC>TAC	p.H425Y	ALOX15_uc010vsd.1_Missense_Mutation_p.H386Y|ALOX15_uc010vse.1_Missense_Mutation_p.H447Y	NM_001140	NP_001131	P16050	LOX15_HUMAN	arachidonate 15-lipoxygenase	425	Lipoxygenase.				inflammatory response|leukotriene biosynthetic process	nucleus	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			skin(3)|ovary(1)|lung(1)	5				READ - Rectum adenocarcinoma(115;0.0327)	Ciclopirox(DB01188)|Masoprocol(DB00179)|Zileuton(DB00744)	AGCTGCACGTGGCCTCCCCCA	0.582													17	10					0	0	1	0	0
PELP1	27043	broad.mit.edu	37	17	4578167	4578167	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:4578167G>A	uc002fyi.3	-	12	1585	c.1359C>T	c.(1357-1359)GCC>GCT	p.A453A	PELP1_uc010vsf.1_Silent_p.A306A	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	453					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						CCTCTCCAGAGGCTCCTCCCT	0.602													54	38					0	0	1	0	0
FBXO39	162517	broad.mit.edu	37	17	6683991	6683991	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:6683991C>T	uc010vtg.1	+	2	924	c.804C>T	c.(802-804)ATC>ATT	p.I268I		NM_153230	NP_694962	Q8N4B4	FBX39_HUMAN	F-box protein 39	268										ovary(1)|skin(1)	2						GACAGGTCATCTGGGGTATGT	0.547													42	29					0	0	1	0	0
TP53	7157	broad.mit.edu	37	17	7578211	7578211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:7578211C>T	uc002gim.2	-	6	832	c.638G>A	c.(637-639)CGA>CAA	p.R213Q	TP53_uc002gig.1_Missense_Mutation_p.R213Q|TP53_uc002gih.2_Missense_Mutation_p.R213Q|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R81Q|TP53_uc010cng.1_Missense_Mutation_p.R81Q|TP53_uc002gii.1_Missense_Mutation_p.R81Q|TP53_uc010cnh.1_Missense_Mutation_p.R213Q|TP53_uc010cni.1_Missense_Mutation_p.R213Q|TP53_uc002gij.2_Missense_Mutation_p.R213Q|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.R120Q|TP53_uc002gio.2_Missense_Mutation_p.R81Q|TP53_uc010vug.1_Missense_Mutation_p.R174Q	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	213	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> L (in sporadic cancers; somatic mutation).|R -> W (in sporadic cancers; somatic mutation).|R -> Q (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in sporadic cancers; somatic mutation).|R -> P (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R213*(182)|p.R213L(25)|p.R213Q(22)|p.R213fs*34(10)|p.0?(7)|p.R213P(5)|p.R213G(2)|p.K164_P219del(1)|p.D208_V216delDRNTFRHSV(1)|p.D207_R213delDDRNTFR(1)|p.T211_S215delTFRHS(1)|p.R213*33(1)|p.D208fs*1(1)|p.R213>L(1)|p.R209_R213delRNTFR(1)|p.R213fs*2(1)|p.T211fs*28(1)|p.R213_S215>X(1)|p.D207_V216del10(1)|p.R213R(1)|p.R213fs*32(1)|p.R209fs*6(1)|p.R213W(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CACACTATGTCGAAAAGTGTT	0.532		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			24	16					0	0	1	0	0
DNAH2	146754	broad.mit.edu	37	17	7671250	7671250	+	Silent	SNP	C	T	T	rs147333435	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:7671250C>T	uc002giu.1	+	22	3722	c.3708C>T	c.(3706-3708)ATC>ATT	p.I1236I		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	1236	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				TCTGGGAGATCGCACGAGACT	0.612													28	18					0	0	1	0	0
PIK3R5	23533	broad.mit.edu	37	17	8814784	8814784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:8814784C>T	uc002glt.2	-	2	95	c.28G>A	c.(28-30)GAG>AAG	p.E10K	PIK3R5_uc010vuz.1_Missense_Mutation_p.E10K|PIK3R5_uc002glu.3_5'UTR|PIK3R5_uc010coa.1_Missense_Mutation_p.E10K|PIK3R5_uc010cob.1_Intron	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	10					platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						ATGCGGTCCTCCGTGCATGTC	0.667													42	32					0	0	1	0	0
GLP2R	9340	broad.mit.edu	37	17	9737125	9737125	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:9737125T>C	uc002gmd.1	+	2	191	c.191T>C	c.(190-192)GTT>GCT	p.V64A	GLP2R_uc010cog.1_RNA	NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	64	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	TTTGCTCAGGTTACAGGATCC	0.488													27	15					0	0	1	0	0
GLP2R	9340	broad.mit.edu	37	17	9739711	9739711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:9739711G>A	uc002gmd.1	+	3	301	c.301G>A	c.(301-303)GAT>AAT	p.D101N	GLP2R_uc010cog.1_RNA	NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	101	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	CGGGACATTTGATCAGTACGT	0.448													89	67					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10398588	10398588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:10398588G>A	uc002gmo.2	-	36	5310	c.5216C>T	c.(5215-5217)TCC>TTC	p.S1739F	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1739	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTGGATTTGGGAAATGTCTGT	0.433													57	42					0	0	1	0	0
DNAH9	1770	broad.mit.edu	37	17	11648245	11648245	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:11648245G>A	uc002gne.2	+	31	6311	c.6243G>A	c.(6241-6243)AAG>AAA	p.K2081K	DNAH9_uc010coo.2_Silent_p.K1375K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2081					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACATCCCCAAGATTGTGACTG	0.597													16	21					0	0	1	0	0
RICH2	9912	broad.mit.edu	37	17	12847413	12847413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:12847413G>A	uc002gnr.3	+	10	1088	c.761G>A	c.(760-762)GGG>GAG	p.G254E	RICH2_uc010vvk.1_Missense_Mutation_p.G254E|RICH2_uc010vvl.1_Missense_Mutation_p.G254E|RICH2_uc002gns.3_Missense_Mutation_p.G54E|RICH2_uc010vvm.1_Missense_Mutation_p.G254E|RICH2_uc010vvn.1_RNA|RICH2_uc002gnt.1_5'UTR	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	254					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						CCTTCCTTCGGGAAGCCGCTG	0.587													8	6					0	0	1	0	0
ELAC2	60528	broad.mit.edu	37	17	12896136	12896136	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:12896136C>T	uc002gnz.3	-	24	2575	c.2480G>A	c.(2479-2481)TGA>TAA	p.*827*	ELAC2_uc002gnu.3_Silent_p.*224*|ELAC2_uc002gnv.3_Silent_p.*455*|ELAC2_uc002gnw.3_Silent_p.*483*|ELAC2_uc002gnx.3_Silent_p.*587*|ELAC2_uc010vvo.1_Silent_p.*625*|ELAC2_uc010vvp.1_Silent_p.*808*|ELAC2_uc010vvq.1_Silent_p.*826*|ELAC2_uc010vvr.1_Silent_p.*787*	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	827					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						CCCAGATCTTCACTGGGCTCT	0.627									Hereditary_Prostate_Cancer				19	15					0	0	1	0	0
HS3ST3A1	9955	broad.mit.edu	37	17	13400005	13400005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:13400005C>T	uc002gob.1	-	2	1528	c.730G>A	c.(730-732)GAC>AAC	p.D244N		NM_006042	NP_006033	Q9Y663	HS3SA_HUMAN	heparan sulfate D-glucosaminyl	244	PAPS and substrate.|Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 3 activity			ovary(1)|central_nervous_system(1)	2		all_lung(20;0.114)		UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GTCACCGGGTCCCGCACCACC	0.632													43	39					0	0	1	0	0
TRIM16	10626	broad.mit.edu	37	17	15510940	15510940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:15510940C>T	uc002gor.1	-	12	2447	c.2110G>A	c.(2110-2112)GAG>AAG	p.E704K	CDRT1_uc002gov.3_Missense_Mutation_p.E394K|CDRT1_uc002gou.2_Missense_Mutation_p.E2K			O95361	TRI16_HUMAN	SubName: Full=Putative uncharacterized protein; Flags: Fragment;	Error:Variant_position_missing_in_O95361_after_alignment					histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		TTTCTCTCCTCCATCAGGACC	0.463													25	14					0	0	1	0	0
TTC19	54902	broad.mit.edu	37	17	15903505	15903505	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:15903505G>C	uc002gph.1	+	2	639	c.621G>C	c.(619-621)GAG>GAC	p.E207D	ZSWIM7_uc002gpe.2_5'Flank|ZSWIM7_uc002gpf.2_5'Flank|ZSWIM7_uc002gpg.2_5'Flank|TTC19_uc010cox.1_RNA	NM_017775	NP_060245	Q6DKK2	TTC19_HUMAN	tetratricopeptide repeat domain 19	86					cell cycle|cytokinesis|mitochondrial respiratory chain complex III assembly	centrosome|midbody|mitochondrial inner membrane	protein binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CCGCTGCCGAGGACGGGGCGG	0.726													7	7					0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18030147	18030147	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:18030147C>T	uc010vxh.1	+	6	4247	c.3909C>T	c.(3907-3909)CTC>CTT	p.L1303L		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1303	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CCAAAATGCTCGATGCCAAAC	0.552													122	77					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	20332083	20332083	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:20332083C>T	uc010cqz.2	+	3		c.603C>T								Homo sapiens cDNA, FLJ17707.																		GCTGGTCACTCCTCAGGACCA	0.557													30	16					0	0	1	0	0
CCDC144NL	339184	broad.mit.edu	37	17	20796748	20796748	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:20796748C>T	uc002gyf.2	-	2	492	c.372G>A	c.(370-372)AAG>AAA	p.K124K	uc002gyg.1_Intron|uc002gyh.1_Intron	NM_001004306	NP_001004306	Q6NUI1	C144L_HUMAN	coiled-coil domain containing 144 family,	124											0						TCTGTTTTTCCTTATATTCAG	0.249													17	18					0	0	1	0	0
PHF12	57649	broad.mit.edu	37	17	27250966	27250966	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:27250966G>A	uc002hdg.1	-	4	1206	c.676C>T	c.(676-678)CAG>TAG	p.Q226*	PHF12_uc010wbb.1_Nonsense_Mutation_p.Q208*|PHF12_uc002hdi.1_Nonsense_Mutation_p.Q222*|PHF12_uc002hdj.1_Nonsense_Mutation_p.Q226*|PHF12_uc010crw.1_Intron|uc002hdl.2_5'Flank|PHF12_uc002hdh.1_Nonsense_Mutation_p.Q9*	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	226	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			TTGGGCAACTGAAATTGGGTG	0.567													8	9					0	0	1	0	0
MYO18A	399687	broad.mit.edu	37	17	27493534	27493534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:27493534G>A	uc002hdt.1	-	2	583	c.425C>T	c.(424-426)TCC>TTC	p.S142F	MYO18A_uc010csa.1_Missense_Mutation_p.S142F|MYO18A_uc002hdu.1_Missense_Mutation_p.S142F	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	142					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			GCTACGCTGGGAGAAGGAAAA	0.622													13	11					0	0	1	0	0
CPD	1362	broad.mit.edu	37	17	28712022	28712022	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:28712022A>G	uc002hfb.1	+	2	777	c.762A>G	c.(760-762)GGA>GGG	p.G254G	CPD_uc010wbo.1_Silent_p.G7G|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	254	Extracellular (Potential).|Carboxypeptidase-like 1.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						TGCTTTCTGGAAATCTGCATG	0.363													100	71					0	0	1	0	0
SUZ12P	440423	broad.mit.edu	37	17	29061941	29061941	+	RNA	SNP	T	C	C	rs112064181	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:29061941T>C	uc002hfn.1	+	2		c.1143T>C			SUZ12P_uc002hfo.2_Intron|SUZ12P_uc002hfp.2_RNA|SUZ12P_uc002hfq.2_RNA					Homo sapiens cDNA clone IMAGE:5299523, containing frame-shift errors.												0						TAGATTTCTTTGAACTCGGAA	0.303													4	38					0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29654857	29654858	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:29654857_29654858GG>AA	uc002hgg.2	+	38	5942	c.5609_splice	c.e38+1	p.R1870_splice	NF1_uc002hgh.2_Splice_Site_p.R1849_splice|NF1_uc002hgi.1_Splice_Site_p.R882_splice|NF1_uc010cso.2_Splice_Site_p.R58_splice	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.S1871fs*13(1)|p.?(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		CCGAGTTTACGGTAGGTTTTTT	0.376			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			17	13					0	0	1	0	0
UTP6	55813	broad.mit.edu	37	17	30226702	30226702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:30226702C>T	uc002hgr.2	-	2	223	c.140G>A	c.(139-141)AGA>AAA	p.R47K	UTP6_uc010cst.2_5'UTR|UTP6_uc010wbw.1_Missense_Mutation_p.R47K	NM_018428	NP_060898	Q9NYH9	UTP6_HUMAN	hepatocellular carcinoma-associated antigen 66	47					rRNA processing	nucleolus	binding			ovary(1)	1		all_hematologic(16;0.0149)|Ovarian(249;0.021)|Myeloproliferative disorder(56;0.0255)|Acute lymphoblastic leukemia(14;0.0257)|Breast(31;0.231)				GAAAAGGGTTCTTCTCTGGAT	0.259													12	31					0	0	1	0	0
SLFN12L	342615	broad.mit.edu	37	17	33802297	33802297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:33802297G>A	uc002hjn.2	-	5	2378	c.1499C>T	c.(1498-1500)CCT>CTT	p.P500L		NM_001145027	NP_001138499			schlafen family member 12-like											ovary(1)	1						TAGGACTGGAGGCTTGTCCTG	0.453													24	34					0	0	1	0	0
AP2B1	163	broad.mit.edu	37	17	33966762	33966762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:33966762C>T	uc002hjr.2	+	11	1609	c.1420C>T	c.(1420-1422)CAC>TAC	p.H474Y	AP2B1_uc002hjq.2_Missense_Mutation_p.H474Y|AP2B1_uc010wci.1_Missense_Mutation_p.H436Y|AP2B1_uc002hjs.2_Missense_Mutation_p.H417Y|AP2B1_uc002hjt.2_Missense_Mutation_p.H474Y|AP2B1_uc010ctv.2_Missense_Mutation_p.H474Y|AP2B1_uc010wcj.1_Missense_Mutation_p.H211Y	NM_001282	NP_001273	P63010	AP2B1_HUMAN	adaptor-related protein complex 2, beta 1	474					axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|vesicle-mediated transport|viral reproduction	clathrin adaptor complex|coated pit|cytosol|endocytic vesicle membrane|plasma membrane	clathrin binding|protein transporter activity			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0227)		GGAGGGTTTTCACGATGAAAG	0.418													39	67					0	0	1	0	0
GAS2L2	246176	broad.mit.edu	37	17	34079764	34079764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:34079764C>T	uc002hjv.1	-	1	134	c.106G>A	c.(106-108)GAA>AAA	p.E36K		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	36	CH.				cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GCCAGGTCTTCCTTCATGGCC	0.632													39	65					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	34233603	34233603	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:34233603G>A	uc010ctx.1	-	1		c.3351C>T								Homo sapiens cDNA FLJ43944 fis, clone TESTI4014392.																		CTACTGTATTGGAGAGGGGTT	0.532													14	37					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35468504	35468504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:35468504C>T	uc002hnm.2	-	52	6607	c.6416G>A	c.(6415-6417)CGG>CAG	p.R2139Q	ACACA_uc002hnk.2_Missense_Mutation_p.R2061Q|ACACA_uc002hnl.2_Missense_Mutation_p.R2081Q|ACACA_uc002hnn.2_Missense_Mutation_p.R2139Q|ACACA_uc002hno.2_Missense_Mutation_p.R2176Q|ACACA_uc010cuy.2_Missense_Mutation_p.R784Q|ACACA_uc010wdb.1_Missense_Mutation_p.R177Q|ACACA_uc010wdc.1_Missense_Mutation_p.R265Q	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	2139	Carboxyltransferase.				acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TGGGTCCACCCGACGCATGGT	0.463													53	140					0	0	1	0	0
ACACA	31	broad.mit.edu	37	17	35600415	35600415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:35600415C>T	uc002hnm.2	-	22	2883	c.2692G>A	c.(2692-2694)GAA>AAA	p.E898K	ACACA_uc002hnk.2_Missense_Mutation_p.E820K|ACACA_uc002hnl.2_Missense_Mutation_p.E840K|ACACA_uc002hnn.2_Missense_Mutation_p.E898K|ACACA_uc002hno.2_Missense_Mutation_p.E935K|ACACA_uc010cuz.2_Missense_Mutation_p.E898K	NM_198836	NP_942133	Q13085	ACACA_HUMAN	acetyl-Coenzyme A carboxylase alpha isoform 2	898					acetyl-CoA metabolic process|energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|triglyceride biosynthetic process	cytosol	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			large_intestine(1)|ovary(1)	2		Breast(25;0.00157)|Ovarian(249;0.15)			Biotin(DB00121)	TCTTGCAATTCTAGGAGAGGC	0.448													99	192					0	0	1	0	0
TBC1D3	729873	broad.mit.edu	37	17	36288274	36288274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:36288274G>A	uc002hoo.2	+	6	517	c.360G>A	c.(358-360)ATG>ATA	p.M120I	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.M40I|TBC1D3_uc010cvf.1_Missense_Mutation_p.M120I|TBC1D3_uc002hoq.2_Missense_Mutation_p.M120I|TBC1D3_uc010wdk.1_Missense_Mutation_p.M181I|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	120	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGAGGAAATGAAGTTGAAAA	0.557													52	679					0	0	1	0	0
GPR179	440435	broad.mit.edu	37	17	36487162	36487162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:36487162C>T	uc002hpz.2	-	11	2311	c.2290G>A	c.(2290-2292)GGG>AGG	p.G764R		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	764	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GCTGGTGTCCCCTCGGGTTCC	0.682													3	8					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	37187418	37187418	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:37187418C>T	uc002hrd.1	+	1		c.1260C>T								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		CCAGAGACACCTACAGAGGTT	0.473													4	5					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	37209131	37209131	+	RNA	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:37209131T>C	uc002hrd.1	+	5		c.3253T>C								Homo sapiens cDNA FLJ43826 fis, clone TESTI4002703.																		AGAATGGAGGTTGCACTATTC	0.527													9	25					0	0	1	0	0
PLXDC1	57125	broad.mit.edu	37	17	37265618	37265618	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:37265618G>A	uc002hrg.2	-	3	494	c.282C>T	c.(280-282)TCC>TCT	p.S94S	PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	94	Extracellular (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						CATAGAGACGGGACACATAAT	0.587													7	16					0	0	1	0	0
RPL19	6143	broad.mit.edu	37	17	37358611	37358611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:37358611C>T	uc002hrq.1	+	3	216	c.154C>T	c.(154-156)CGC>TGC	p.R52C	RPL19_uc002hrr.1_Missense_Mutation_p.R50C	NM_000981	NP_000972	P84098	RL19_HUMAN	ribosomal protein L19	52					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0						GCTGATCATCCGCAAGCCTGT	0.567													35	65					0	0	1	0	0
IKZF3	22806	broad.mit.edu	37	17	37922608	37922608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:37922608G>A	uc002hsu.2	-	8	1027	c.965C>T	c.(964-966)CCC>CTC	p.P322L	IKZF3_uc002htd.2_Missense_Mutation_p.P288L|IKZF3_uc010cwd.2_Missense_Mutation_p.P179L|IKZF3_uc002hsv.2_Missense_Mutation_p.P249L|IKZF3_uc010cwe.2_Missense_Mutation_p.P188L|IKZF3_uc010cwf.2_Missense_Mutation_p.P140L|IKZF3_uc010cwg.2_Missense_Mutation_p.P101L|IKZF3_uc002hsw.2_Missense_Mutation_p.P283L|IKZF3_uc002hsx.2_Missense_Mutation_p.P266L|IKZF3_uc002hsy.2_Missense_Mutation_p.P283L|IKZF3_uc002hsz.2_Missense_Mutation_p.P227L|IKZF3_uc002hta.2_Missense_Mutation_p.P244L|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Missense_Mutation_p.P235L|IKZF3_uc002htc.2_Missense_Mutation_p.P75L|IKZF3_uc010wel.1_Missense_Mutation_p.P75L	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	322					B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CTGGACCAAGGGGCGCAGGGC	0.557													46	63					0	0	1	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	C	C	rs141357429	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:39274087G>C	uc002hvz.2	-	1	520	c.481C>G	c.(481-483)CTG>GTG	p.L161V		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	161	27.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACTGGACGCAGGcagcagcag	0.323													4	33					0	0	1	0	0
KRT31	3881	broad.mit.edu	37	17	39551755	39551756	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:39551755_39551756CC>TT	uc002hwn.2	-	4	761_762	c.708_709GG>AA	c.(706-711)GTGGAA>GTAAAA	p.E237K	KRT31_uc010cxn.2_Missense_Mutation_p.E237K	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	237	Coil 2.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				CGGTTGGTTTCCACCAGGGCCT	0.634													37	86					0	0	1	0	0
KRT9	3857	broad.mit.edu	37	17	39724825	39724826	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:39724825_39724826CC>TT	uc002hxe.3	-	5	1170_1171	c.1104_1105GG>AA	c.(1102-1107)AAGGAG>AAAAAG	p.E369K	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	369	Rod.|Coil 2.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				TGGGTCACCTCCTTGGCACTGG	0.55													179	416					0	0	1	0	0
JUP	3728	broad.mit.edu	37	17	39921212	39921212	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:39921212G>A	uc002hxq.2	-	6	1294	c.1017C>T	c.(1015-1017)TCC>TCT	p.S339S	JUP_uc010wfs.1_Intron|JUP_uc002hxr.2_Silent_p.S339S|JUP_uc002hxs.2_Silent_p.S339S	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	339					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		TGGGACACACGGATAGCACCT	0.592													67	135					0	0	1	0	0
CNTD1	124817	broad.mit.edu	37	17	40956392	40956392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:40956392G>A	uc002ibm.3	+	3	627	c.395G>A	c.(394-396)AGC>AAC	p.S132N	CNTD1_uc010wha.1_Missense_Mutation_p.S49N	NM_173478	NP_775749	Q8N815	CNTD1_HUMAN	cyclin N-terminal domain containing 1	132	Cyclin N-terminal.									central_nervous_system(1)	1		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CAGCTGGCCAGCAAACTTTCC	0.473													52	120					0	0	1	0	0
AOC3	8639	broad.mit.edu	37	17	41003568	41003568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:41003568G>A	uc002ibv.2	+	1	368	c.208G>A	c.(208-210)GCT>ACT	p.A70T		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	70	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	GGAGCTGACGGCTGTGATGCG	0.642													87	144					0	0	1	0	0
LOC90586	90586	broad.mit.edu	37	17	41019659	41019659	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:41019659G>A	uc002ibw.1	+	1	498	c.364G>A	c.(364-366)GAG>AAG	p.E122K	LOC90586_uc002ibx.2_5'Flank	NR_002773				Homo sapiens amine oxidase pseudogene mRNA, splice variant HLAO1.												0						ACCTGCCCGGGAGGCACTGGC	0.657													11	21					0	0	1	0	0
G6PC	2538	broad.mit.edu	37	17	41059602	41059602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:41059602C>T	uc002icb.1	+	3	482	c.403C>T	c.(403-405)CTT>TTT	p.L135F	G6PC_uc010whf.1_Intron	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	135	Helical; (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CACATCTACTCTTTCCATCTT	0.512									Glycogen_Storage_Disease_type_Ia				36	51					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42335549	42335549	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:42335549C>T	uc002igf.3	-	11	1237	c.1088_splice	c.e11-1	p.D363_splice	SLC4A1_uc002igg.3_Splice_Site_p.D363_splice	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member						bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		CCATTTAAGTCTGTGGTGGAG	0.597													36	73					0	0	1	0	0
SLC4A1	6521	broad.mit.edu	37	17	42338150	42338150	+	Missense_Mutation	SNP	C	T	T	rs13306787		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:42338150C>T	uc002igf.3	-	5	351	c.202G>A	c.(202-204)GAA>AAA	p.E68K	SLC4A1_uc002igg.3_Missense_Mutation_p.E68K	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	68	Cytoplasmic.			E -> EE (in Ref. 7; AA sequence).	bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		TGGTTCTTTTCGTCCATCACC	0.617													33	63					0	0	1	0	0
RUNDC3A	10900	broad.mit.edu	37	17	42392170	42392171	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:42392170_42392171GG>AA	uc002igl.3	+	5	800_801	c.526_527GG>AA	c.(526-528)GGA>AAA	p.G176K	RUNDC3A_uc002igi.2_Missense_Mutation_p.G176K|RUNDC3A_uc002igj.2_Missense_Mutation_p.G171K|RUNDC3A_uc002igk.2_Missense_Mutation_p.G172K	NM_001144825	NP_001138297	Q59EK9	RUN3A_HUMAN	RUN domain containing 3A isoform 1	176	Interaction with RAP2A (By similarity).|RUN.				small GTPase mediated signal transduction		small GTPase regulator activity				0		Prostate(33;0.0233)		BRCA - Breast invasive adenocarcinoma(366;0.189)		AATGCTGATCGGACTGAGCGCC	0.609													27	68					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42475591	42475591	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:42475591G>A	uc002igw.1	-	8	3918	c.3854C>T	c.(3853-3855)CCC>CTC	p.P1285L	GPATCH8_uc002igv.1_Missense_Mutation_p.P1207L|GPATCH8_uc010wiz.1_Missense_Mutation_p.P1207L	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	1285						intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		ATCCCCACTGGGAGGTGCATA	0.582													102	173					0	0	1	0	0
HEXIM2	124790	broad.mit.edu	37	17	43246726	43246726	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:43246726C>A	uc002iih.1	+	4	650	c.411C>A	c.(409-411)CCC>CCA	p.P137P	HEXIM2_uc010daf.1_Silent_p.P159P|HEXIM2_uc002iii.1_Silent_p.P137P|HEXIM2_uc002iij.1_Silent_p.P137P|uc002iik.1_RNA	NM_144608	NP_653209	Q96MH2	HEXI2_HUMAN	hexamthylene bis-acetamide inducible 2	137					negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding				0						AAGGCCAGCCCGTGGCCCCCT	0.627													34	102					1.08052e-11	1.09013e-11	1	1	0
ARHGAP27	201176	broad.mit.edu	37	17	43480185	43480185	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:43480185C>T	uc002iix.2	-	9	1065	c.616_splice	c.e9-1	p.R206_splice	ARHGAP27_uc010dak.2_Splice_Site_p.R179_splice|ARHGAP27_uc010wjl.1_Splice_Site_p.R325_splice	NM_199282	NP_954976	Q6ZUM4	RHG27_HUMAN	Rho GTPase activating protein 27 isoform a						positive regulation of Cdc42 GTPase activity|receptor-mediated endocytosis|signal transduction	cytoplasm|membrane	Rac GTPase activator activity|SH3 domain binding				0	Renal(3;0.0405)					AAGGCTGCCTCTGTGGGAGAG	0.582													34	101					0	0	1	0	0
LRRC37A2	474170	broad.mit.edu	37	17	44626249	44626249	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:44626249G>A	uc002ikn.1	+	9	3747	c.3744G>A	c.(3742-3744)CTG>CTA	p.L1248L	ARL17A_uc002iko.3_Intron|LRRC37A2_uc002ikq.1_Silent_p.L209L|LRRC37A2_uc010dax.1_Silent_p.L178L	NM_001006607	NP_001006608	A6NM11	L37A2_HUMAN	c114 SLIT-like testicular protein precursor	1248	Extracellular (Potential).					integral to membrane					0		Melanoma(429;0.211)		BRCA - Breast invasive adenocarcinoma(366;0.232)		TCTCTGTGCTGAAACCCTTCT	0.547													47	95					0	0	1	0	0
ITGB3	3690	broad.mit.edu	37	17	45368447	45368447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:45368447G>A	uc002ilj.2	+	9	1273	c.1253G>A	c.(1252-1254)GGA>GAA	p.G418E	ITGB3_uc002ili.1_Missense_Mutation_p.G418E|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	418	Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	CTCAAGATTGGAGACACGGTG	0.542													62	71					0	0	1	0	0
NPEPPS	9520	broad.mit.edu	37	17	45681379	45681379	+	Silent	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:45681379G>T	uc002ilr.3	+	16	2062	c.1839G>T	c.(1837-1839)GTG>GTT	p.V613V	NPEPPS_uc010wkt.1_Silent_p.V609V|NPEPPS_uc010wku.1_Silent_p.V577V|NPEPPS_uc010wkv.1_Silent_p.V167V|NPEPPS_uc002ils.1_Silent_p.V46V	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	613					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						TGCCCCCTGTGGATCGACTTG	0.428													33	49					7.63091e-17	7.72525e-17	1	1	0
SKAP1	8631	broad.mit.edu	37	17	46423311	46423311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:46423311G>A	uc002ini.1	-	4	348	c.236C>T	c.(235-237)TCC>TTC	p.S79F	SKAP1_uc002inj.1_Missense_Mutation_p.S79F|SKAP1_uc010dbd.1_5'UTR|SKAP1_uc010dbe.1_Missense_Mutation_p.S79F	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	79					positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						GGATGTGAGGGACAGGCCAAG	0.463													30	48					0	0	1	0	0
HOXB3	3213	broad.mit.edu	37	17	46629704	46629704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:46629704C>T	uc002inn.2	-	1	533	c.133G>A	c.(133-135)GGC>AGC	p.G45S	HOXB3_uc010wlm.1_5'UTR|HOXB3_uc010dbf.2_Missense_Mutation_p.G45S|HOXB3_uc010dbg.2_Missense_Mutation_p.G45S|HOXB3_uc002ino.2_Missense_Mutation_p.G45S|HOXB3_uc010wlk.1_Intron|HOXB3_uc010wll.1_5'UTR	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	45					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGGTAGTCGCCCTCCAGGTGC	0.647													42	30					0	0	1	0	0
B4GALNT2	124872	broad.mit.edu	37	17	47230163	47230163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:47230163G>A	uc002ion.2	+	4	594	c.535G>A	c.(535-537)GAA>AAA	p.E179K	B4GALNT2_uc010wlt.1_Missense_Mutation_p.E93K|B4GALNT2_uc010wlu.1_Missense_Mutation_p.E119K	NM_153446	NP_703147	Q8NHY0	B4GN2_HUMAN	beta-1,4-N-acetyl-galactosaminyl transferase 2	179	Lumenal (Potential).				lipid glycosylation|negative regulation of cell-cell adhesion|UDP-N-acetylgalactosamine metabolic process	integral to Golgi membrane	acetylgalactosaminyltransferase activity			large_intestine(1)|ovary(1)	2			all cancers(6;0.000316)			TTCCTGCAGAGAAGGGCTGCC	0.612													8	18					0	0	1	0	0
COL1A1	1277	broad.mit.edu	37	17	48270171	48270171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:48270171G>A	uc002iqm.2	-	27	1988	c.1862C>T	c.(1861-1863)CCC>CTC	p.P621L		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	621	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	AGGGCCAGGGGGTCCCTGAGC	0.642			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						17	56					0	0	1	0	0
SPATA20	64847	broad.mit.edu	37	17	48628957	48628957	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:48628957C>T	uc002irf.2	+	12	1755	c.1614C>T	c.(1612-1614)TTC>TTT	p.F538F	SPATA20_uc002irc.2_Silent_p.F205F|SPATA20_uc002ire.2_Silent_p.F494F|SPATA20_uc002ird.2_Silent_p.F554F|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	538					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			GTGCCAAGTTCCTGAAGCGGC	0.612													43	118					0	0	1	0	0
STXBP4	252983	broad.mit.edu	37	17	53150371	53150371	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:53150371C>T	uc002iuf.1	+	13	1329	c.1122C>T	c.(1120-1122)ATC>ATT	p.I374I	STXBP4_uc010dcd.1_Silent_p.I352I	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4	374	Potential.					cytoplasm	calcium ion binding			ovary(1)	1						AAGAAGTGATCCGTCTGTTAG	0.443													49	111					0	0	1	0	0
DGKE	8526	broad.mit.edu	37	17	54912183	54912183	+	Silent	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:54912183G>C	uc002iur.2	+	2	207	c.27G>C	c.(25-27)CCG>CCC	p.P9P	DGKE_uc002ius.1_Silent_p.P9P|C17orf67_uc002iuq.2_5'Flank	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	9					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					GGCCGGCGCCGGGCTCGCCCT	0.652													114	408					0	0	1	0	0
DGKE	8526	broad.mit.edu	37	17	54923092	54923092	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:54923092C>T	uc002iur.2	+	4	846	c.666C>T	c.(664-666)ATC>ATT	p.I222I	DGKE_uc002ius.1_Silent_p.I222I	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	222	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					CATTAATAATCCTGGCCAACT	0.373													65	57					0	0	1	0	0
MPO	4353	broad.mit.edu	37	17	56350878	56350878	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:56350878T>C	uc002ivu.1	-	9	1695	c.1518A>G	c.(1516-1518)CAA>CAG	p.Q506Q		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	506					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	ACATGAAGGGTTGGATGAGGG	0.597													161	157					0	0	1	0	0
MTMR4	9110	broad.mit.edu	37	17	56573512	56573512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:56573512C>T	uc002iwj.2	-	16	2101	c.1991G>A	c.(1990-1992)GGA>GAA	p.G664E		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	664						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTGAGGCCCTCCTACCCCAGA	0.532													54	66					0	0	1	0	0
MTMR4	9110	broad.mit.edu	37	17	56581115	56581115	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:56581115A>G	uc002iwj.2	-	15	1911	c.1801T>C	c.(1801-1803)TCT>CCT	p.S601P		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	601						cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CTGTCCAGAGAGCGGCCAGAG	0.453													48	126					0	0	1	0	0
C17orf47	284083	broad.mit.edu	37	17	56621276	56621276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:56621276C>T	uc002iwq.1	-	1	408	c.272G>A	c.(271-273)GGA>GAA	p.G91E		NM_001038704	NP_001033793	Q8NEP4	CQ047_HUMAN	hypothetical protein LOC284083	91										breast(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TGTTCTTGGTCCAGTCTCGGG	0.542													61	50					0	0	1	0	0
C17orf71	55181	broad.mit.edu	37	17	57292291	57292291	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:57292291C>T	uc002ixi.2	+	4	2946	c.2904C>T	c.(2902-2904)TTC>TTT	p.F968F		NM_018149	NP_060619	Q8ND04	SMG8_HUMAN	SMG8 protein	968					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of protein kinase activity		protein binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					GACCTTGTTTCCCCCCTAAGG	0.443													66	82					0	0	1	0	0
APPBP2	10513	broad.mit.edu	37	17	58539383	58539383	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:58539383A>G	uc002iys.1	-	7	1090	c.802T>C	c.(802-804)TTA>CTA	p.L268L	APPBP2_uc010ddl.1_Silent_p.L197L	NM_006380	NP_006371	Q92624	APBP2_HUMAN	amyloid beta precursor protein-binding protein	268					intracellular protein transport	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|nucleus	microtubule motor activity|protein binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.67e-13)|all cancers(12;1.44e-11)|Colorectal(3;0.01)			TGTTTAATTAACTGTTCTGCC	0.294													142	173					0	0	1	0	0
NACA2	342538	broad.mit.edu	37	17	59668335	59668335	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:59668335C>T	uc002izj.2	-	1	233	c.207G>A	c.(205-207)CAG>CAA	p.Q69Q		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	69					protein transport	cytoplasm|nucleus				ovary(1)	1	all_epithelial(1;3.12e-14)					CACTCCGACTCTGTTTTGCTT	0.473													90	249					0	0	1	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342489	60342489	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:60342489G>A	uc010woz.1	-	14		c.1640C>T				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TGCCCTGGTCGGAATCAGTGC	0.622													39	175					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60493449	60493449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:60493449G>A	uc002izu.1	+	10	1154	c.1076G>A	c.(1075-1077)GGG>GAG	p.G359E	EFCAB3_uc010wpc.1_Missense_Mutation_p.G411E	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	359							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			AAGATCCGAGGGGATTTGATT	0.423													60	61					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60754833	60754833	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:60754833C>T	uc002jad.2	+	12	2440	c.2038C>T	c.(2038-2040)CGG>TGG	p.R680W	MRC2_uc010ddq.1_RNA	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	680	Extracellular (Potential).|C-type lectin 4.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CACCAAACTCCGGTATTGCTA	0.662													7	31					0	0	1	0	0
MARCH10	162333	broad.mit.edu	37	17	60779115	60779115	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:60779115C>T	uc010ddr.2	-	11	2614	c.2376G>A	c.(2374-2376)TCG>TCA	p.S792S	MARCH10_uc002jag.3_Silent_p.S792S|MARCH10_uc010dds.2_Silent_p.S830S	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	792							ligase activity|zinc ion binding				0						CTCCCAACTCCGAATCTGGAA	0.587													64	168					0	0	1	0	0
TANC2	26115	broad.mit.edu	37	17	61498921	61498921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:61498921C>T	uc002jal.3	+	25	5601	c.5578C>T	c.(5578-5580)CAC>TAC	p.H1860Y	TANC2_uc010wpe.1_3'UTR|TANC2_uc002jao.3_Missense_Mutation_p.H971Y	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	1860							binding			ovary(2)	2						GCAGTACCCCCACCTCCACCA	0.582													53	177					0	0	1	0	0
KCNH6	81033	broad.mit.edu	37	17	61601686	61601686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:61601686G>A	uc002jay.2	+	2	343	c.263G>A	c.(262-264)GGG>GAG	p.G88E	KCNH6_uc002jax.1_Missense_Mutation_p.G88E|KCNH6_uc010wpl.1_Intron|KCNH6_uc010wpm.1_Missense_Mutation_p.G88E|KCNH6_uc002jaz.1_Missense_Mutation_p.G88E	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	88	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GCCCTGCTGGGGGCTGAGGAG	0.632													29	80					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62018265	62018265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:62018265C>T	uc002jds.1	-	24	5454	c.5377G>A	c.(5377-5379)GAG>AAG	p.E1793K		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1793					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CCCTTCTCCTCCGGGCTTGGC	0.672													17	44					0	0	1	0	0
TEX2	55852	broad.mit.edu	37	17	62290899	62290899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:62290899G>A	uc002jec.2	-	2	852	c.679C>T	c.(679-681)CGG>TGG	p.R227W	TEX2_uc002jed.2_Missense_Mutation_p.R227W|TEX2_uc002jee.2_Missense_Mutation_p.R227W	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	227					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		GACTCCTGCCGGGAAGTGTCC	0.532													51	121					0	0	1	0	0
RGS9	8787	broad.mit.edu	37	17	63221224	63221224	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:63221224G>A	uc002jfe.2	+	18	1622	c.1512G>A	c.(1510-1512)AGG>AGA	p.R504R	RGS9_uc010dem.2_Silent_p.R501R|RGS9_uc002jfd.2_Silent_p.R501R|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Silent_p.R275R	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	504					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						GCTCCCCCAGGAAGCCTTTCG	0.662													156	145					0	0	1	0	0
CCDC46	201134	broad.mit.edu	37	17	64049913	64049913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:64049913C>T	uc002jfl.2	-	12	1378	c.1159G>A	c.(1159-1161)GAT>AAT	p.D387N	CCDC46_uc010deo.2_Missense_Mutation_p.D129N|CCDC46_uc002jfm.2_Missense_Mutation_p.D387N|CCDC46_uc010dep.2_Missense_Mutation_p.D345N	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	387	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			ACATTTGTATCCTCAAGCAAT	0.388													75	197					0	0	1	0	0
ABCA5	23461	broad.mit.edu	37	17	67249976	67249976	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:67249976G>A	uc002jif.2	-	32	5497	c.4279C>T	c.(4279-4281)CAG>TAG	p.Q1427*	ABCA5_uc002jib.2_Nonsense_Mutation_p.Q393*|ABCA5_uc002jic.2_Nonsense_Mutation_p.Q650*|ABCA5_uc002jid.2_Nonsense_Mutation_p.Q344*|ABCA5_uc002jie.2_RNA|ABCA5_uc002jig.2_Nonsense_Mutation_p.Q1427*	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	1427	ABC transporter 2.				cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					ACAGTCTTCTGAAGATGTTCT	0.308													59	70					0	0	1	0	0
SLC39A11	201266	broad.mit.edu	37	17	70845917	70845917	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:70845917G>A	uc002jjb.2	-	6	593	c.478C>T	c.(478-480)CAG>TAG	p.Q160*	SLC39A11_uc002jja.2_Nonsense_Mutation_p.Q153*|SLC39A11_uc002jjc.1_Nonsense_Mutation_p.Q153*	NM_001159770	NP_001153242	Q8N1S5	S39AB_HUMAN	solute carrier family 39, member 11 isoform 1	160					zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)	1						TTCTTTCTCTGATATGCCTCA	0.532													17	57					0	0	1	0	0
C17orf77	146723	broad.mit.edu	37	17	72588510	72588510	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:72588510A>T	uc002jla.1	+	3	687	c.325A>T	c.(325-327)AAG>TAG	p.K109*	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	109						extracellular region					0						ATTAGGAGAAAAGAGGTGTCA	0.423													75	70					0	0	1	0	0
CD300LF	146722	broad.mit.edu	37	17	72700768	72700768	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:72700768C>A	uc002jlg.2	-	2	334	c.231G>T	c.(229-231)AGG>AGT	p.R77S	RAB37_uc002jlc.2_Intron|RAB37_uc010dfu.2_Intron|RAB37_uc002jld.2_Intron|CD300LF_uc002jlf.2_Missense_Mutation_p.R80S|CD300LF_uc010dfw.2_RNA|CD300LF_uc002jlh.2_Missense_Mutation_p.R77S|CD300LF_uc002jli.2_Missense_Mutation_p.R80S|CD300LF_uc010wra.1_Missense_Mutation_p.R77S|CD300LF_uc002jlj.1_Missense_Mutation_p.R80S	NM_139018	NP_620587	Q8TDQ1	CLM1_HUMAN	NK inhibitory receptor precursor	77	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			upper_aerodigestive_tract(1)	1						ACACCCGGTCCCTCTTCACCT	0.507													189	197					4.31785e-110	4.43365e-110	1	1	0
USH1G	124590	broad.mit.edu	37	17	72916375	72916375	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:72916375G>A	uc002jme.1	-	2	739	c.556C>T	c.(556-558)CTG>TTG	p.L186L	USH1G_uc010wro.1_Silent_p.L83L	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	186					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					CGGCGGCTCAGGGTGCTGGAC	0.682													21	54					0	0	1	0	0
C17orf28	283987	broad.mit.edu	37	17	72959173	72959173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:72959173C>T	uc002jmj.3	-	4	540	c.391G>A	c.(391-393)GGA>AGA	p.G131R	C17orf28_uc010wrs.1_5'UTR|C17orf28_uc002jmk.2_Missense_Mutation_p.G130R	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	131						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					TCCTCTTCTCCCTGCTGGGGA	0.657													8	11					0	0	1	0	0
KIAA0195	9772	broad.mit.edu	37	17	73489155	73489155	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:73489155C>T	uc002jnz.3	+	16	2333	c.2058C>T	c.(2056-2058)ATC>ATT	p.I686I	KIAA0195_uc010wsa.1_Silent_p.I696I|KIAA0195_uc010wsb.1_Silent_p.I326I|KIAA0195_uc002job.3_5'Flank	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	686					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCCACATGATCAGCCTCTTCA	0.637													11	50					0	0	1	0	0
RECQL5	9400	broad.mit.edu	37	17	73625348	73625348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:73625348C>T	uc010dgl.2	-	16	2311	c.2155G>A	c.(2155-2157)GGC>AGC	p.G719S	RECQL5_uc010dgk.2_Missense_Mutation_p.G692S|RECQL5_uc002jot.3_5'Flank	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	719					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			TGAGCGCTGCCTCCAGGGACC	0.682								Other_identified_genes_with_known_or_suspected_DNA_repair_function					10	26					0	0	1	0	0
AFMID	125061	broad.mit.edu	37	17	76183458	76183458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:76183458G>A	uc002jva.3	+	1	22	c.7G>A	c.(7-9)GAT>AAT	p.D3N	TK1_uc002juw.2_5'Flank|TK1_uc002jux.2_5'Flank|AFMID_uc002juy.3_RNA|AFMID_uc010dhj.2_Missense_Mutation_p.D3N|AFMID_uc002jvb.3_Missense_Mutation_p.D3N|AFMID_uc002juz.3_Missense_Mutation_p.D3N	NM_001010982	NP_001010982	Q63HM1	AFMID_HUMAN	arylformamidase isoform 1	3						cytosol|nucleus	arylformamidase activity			large_intestine(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|OV - Ovarian serous cystadenocarcinoma(97;0.134)			CGCCATGATGGATGTGTCTGG	0.597													42	118					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76455240	76455240	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:76455240G>C	uc010dhp.1	-	6	926	c.704C>G	c.(703-705)TCC>TGC	p.S235C	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GGCGGCCGTGGACTTGGAGCG	0.542													226	270					0	0	1	0	0
DNAH17	8632	broad.mit.edu	37	17	76501436	76501436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:76501436C>T	uc010wtu.1	-	5	947	c.770G>A	c.(769-771)GGA>GAA	p.G257E						full-length cDNA clone CS0DJ002YI14 of T cells (Jurkat cell line) Cot 10-normalized of Homo sapiens (human).											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			GCTGTACATTCCCAGGCCCAC	0.557													28	53					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78323704	78323704	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:78323704C>T	uc002jyh.1	+	5	4528	c.4305C>T	c.(4303-4305)GTC>GTT	p.V1435V		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TCAAAGAAGTCCGGTGAGGTT	0.592													39	44					0	0	1	0	0
RNF213	57674	broad.mit.edu	37	17	78346396	78346396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:78346396C>T	uc002jyh.1	+	23	7055	c.6832C>T	c.(6832-6834)CTT>TTT	p.L2278F	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.L660F	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			AGGTCGTTTCCTTAAGGCATA	0.522													22	25					0	0	1	0	0
CHMP6	79643	broad.mit.edu	37	17	78970822	78970822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:78970822G>A	uc002jyw.3	+	5	442	c.364G>A	c.(364-366)GAG>AAG	p.E122K		NM_024591	NP_078867	Q96FZ7	CHMP6_HUMAN	chromatin modifying protein 6	122	Potential.				cellular membrane organization|endosome transport|protein transport	cytosol|endomembrane system|late endosome membrane	protein N-terminus binding			ovary(1)	1	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0175)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GTCCATTGAAGAGGTGGAGAG	0.642													31	79					0	0	1	0	0
TMEM105	284186	broad.mit.edu	37	17	79287665	79287665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:79287665G>A	uc002kad.1	-	3	726	c.176C>T	c.(175-177)TCC>TTC	p.S59F		NM_178520	NP_848615	Q8N8V8	TM105_HUMAN	transmembrane protein 105	59						integral to membrane		p.S59S(1)		ovary(1)	1	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.0892)			CCGAGGTGGGGACCCCTGGGG	0.627													71	119					0	0	1	0	0
C17orf70	80233	broad.mit.edu	37	17	79514505	79514505	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:79514505A>G	uc002kaq.2	-	5	1658	c.1603T>C	c.(1603-1605)TTC>CTC	p.F535L	C17orf70_uc002kao.1_Missense_Mutation_p.F184L|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Missense_Mutation_p.F384L	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	535					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			TCCAGGCTGAAGCTGCTGCTG	0.647													82	101					0	0	1	0	0
C17orf62	79415	broad.mit.edu	37	17	80407105	80407105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:80407105G>A	uc002kez.2	-	1	74	c.26C>T	c.(25-27)ACC>ATC	p.T9I	C17orf62_uc002key.2_5'Flank|C17orf62_uc002kfa.2_Missense_Mutation_p.T9I|C17orf62_uc010dir.2_Missense_Mutation_p.T9I|C17orf62_uc002kfb.3_Missense_Mutation_p.T9I|C17orf62_uc002kfc.3_Missense_Mutation_p.T9I|C17orf62_uc002kfd.3_5'UTR|C17orf62_uc002kfe.3_Intron|C17orf62_uc010dis.1_Missense_Mutation_p.T9I	NM_001100407	NP_001093877	Q9BQA9	CQ062_HUMAN	hypothetical protein LOC79415 isoform a	9						integral to membrane	protein binding				0	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GCGGGAGCTGGTGCGGGTCTC	0.647													4	11					0	0	1	0	0
METRNL	284207	broad.mit.edu	37	17	81052115	81052115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:81052115C>T	uc002kgh.2	+	4	856	c.731C>T	c.(730-732)CCC>CTC	p.P244L	METRNL_uc002kgi.2_Missense_Mutation_p.P162L	NM_001004431	NP_001004431	Q641Q3	METRL_HUMAN	meteorin, glial cell differentiation	244						extracellular region					0	Breast(20;0.000443)|all_neural(118;0.0779)		BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			GAGCCGGTGCCCGAGGGTGAC	0.652													45	54					0	0	1	0	0
SMCHD1	23347	broad.mit.edu	37	18	2732330	2732331	+	Missense_Mutation	DNP	TA	CT	CT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:2732330_2732331TA>CT	uc002klm.3	+	25	3305_3306	c.3116_3117TA>CT	c.(3115-3117)CTA>CCT	p.L1039P	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	1039					chromosome organization		ATP binding				0						GTTGCAAGACTACAAATATTCA	0.371													49	82					0	0	1	0	0
EMILIN2	84034	broad.mit.edu	37	18	2884977	2884977	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:2884977C>T	uc002kln.2	+	3	432	c.273C>T	c.(271-273)TTC>TTT	p.F91F		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	91	EMI.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		GAGTGAACTTCAGACCTAGAT	0.498													31	50					0	0	1	0	0
MYOM1	8736	broad.mit.edu	37	18	3126851	3126851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:3126851G>A	uc002klp.2	-	19	3173	c.2839C>T	c.(2839-2841)CGT>TGT	p.R947C	MYOM1_uc002klq.2_Missense_Mutation_p.R851C	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	947	Fibronectin type-III 4.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						ATTGAGTCACGAAAACTTTCA	0.423													5	17					0	0	1	0	0
MYL12B	103910	broad.mit.edu	37	18	3277816	3277816	+	Missense_Mutation	SNP	T	C	C	rs144447000		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:3277816T>C	uc010dkl.2	+	4	559	c.400T>C	c.(400-402)TTT>CTT	p.F134L	MYL12B_uc002klt.3_Missense_Mutation_p.F112L|MYL12B_uc010wyv.1_Missense_Mutation_p.F134L	NM_001144944	NP_001138416	O14950	ML12B_HUMAN	myosin regulatory light chain MRCL2 isoform A	134	EF-hand 3.				axon guidance|muscle contraction	cytosol|myosin complex	calcium ion binding				0						GGGGGATCGGTTTACAGATGA	0.448													14	43					0	0	1	0	0
TGIF1	7050	broad.mit.edu	37	18	3457604	3457604	+	Missense_Mutation	SNP	C	T	T	rs121909069		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:3457604C>T	uc002klz.2	+	3	1259	c.872C>T	c.(871-873)TCC>TTC	p.S291F	TGIF1_uc002klu.2_Missense_Mutation_p.S142F|TGIF1_uc002klv.2_Missense_Mutation_p.S176F|TGIF1_uc002klx.2_Missense_Mutation_p.S142F|TGIF1_uc002klw.2_Missense_Mutation_p.S162F|TGIF1_uc002kly.2_Missense_Mutation_p.S162F|TGIF1_uc002kma.2_Missense_Mutation_p.S142F|TGIF1_uc002kmb.2_Missense_Mutation_p.S142F|TGIF1_uc002kmc.2_Missense_Mutation_p.S142F	NM_170695	NP_733796	Q15583	TGIF1_HUMAN	TG-interacting factor isoform a	291			S -> F (in HPE4).		negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Esophageal squamous(4;0.0859)	Colorectal(8;0.0104)				AAGCCGTCATCCCCGGGATCA	0.532													21	51					0	0	1	0	0
DLGAP1	9229	broad.mit.edu	37	18	3814214	3814214	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:3814214G>A	uc002kmf.2	-	2	1084	c.1017C>T	c.(1015-1017)TGC>TGT	p.C339C	DLGAP1_uc010wyz.1_Silent_p.C339C|DLGAP1_uc002kme.1_Silent_p.C37C|DLGAP1_uc010dkn.2_Silent_p.C37C|DLGAP1_uc010wyw.1_Silent_p.C45C|DLGAP1_uc010wyx.1_Silent_p.C51C|DLGAP1_uc010wyy.1_Silent_p.C51C|DLGAP1_uc002kmg.2_Silent_p.C37C|DLGAP1_uc002kmk.2_Silent_p.C339C	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	339					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GCATTCTTCGGCATGGAATTT	0.453													53	122					0	0	1	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6243326	6243326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:6243326C>T	uc002kmz.3	-	7	587	c.427G>A	c.(427-429)GAA>AAA	p.E143K	L3MBTL4_uc010dkt.2_Missense_Mutation_p.E143K|L3MBTL4_uc002kmy.3_5'Flank	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	143	MBT 1.				chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				TTGGTCTTTTCACACCATCCT	0.373													61	75					0	0	1	0	0
ARHGAP28	79822	broad.mit.edu	37	18	6909015	6909015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:6909015G>A	uc010wzi.1	+	16	1794	c.1556G>A	c.(1555-1557)GGA>GAA	p.G519E	ARHGAP28_uc002kne.2_Missense_Mutation_p.G537E			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	519					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				GAAATTGGAGGAAATATAGGT	0.259													14	55					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	7013906	7013906	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:7013906C>T	uc002knm.2	-	23	3365	c.3271G>A	c.(3271-3273)GAC>AAC	p.D1091N	LAMA1_uc010wzj.1_Missense_Mutation_p.D567N	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1091	Laminin EGF-like 13.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGGTCACAGTCACAGGGAACA	0.597													16	11					0	0	1	0	0
ANKRD12	23253	broad.mit.edu	37	18	9255333	9255333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:9255333G>A	uc002knv.2	+	9	2325	c.2068G>A	c.(2068-2070)GAA>AAA	p.E690K	ANKRD12_uc002knw.2_Missense_Mutation_p.E667K|ANKRD12_uc002knx.2_Missense_Mutation_p.E667K|ANKRD12_uc010dkx.1_Missense_Mutation_p.E397K	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	690						nucleus				ovary(2)|central_nervous_system(1)	3						gaggagtgtggaatttgatag	0.065													19	26					0	0	1	0	0
ANKRD12	23253	broad.mit.edu	37	18	9275539	9275539	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:9275539C>T	uc002knv.2	+	11	6038	c.5781C>T	c.(5779-5781)TCC>TCT	p.S1927S	ANKRD12_uc002knw.2_Silent_p.S1904S|ANKRD12_uc002knx.2_Silent_p.S1904S	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1927						nucleus				ovary(2)|central_nervous_system(1)	3						TCATTGTATCCAACGAACAAG	0.274													62	120					0	0	1	0	0
MC5R	4161	broad.mit.edu	37	18	13826628	13826628	+	Silent	SNP	C	T	T	rs142287236	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:13826628C>T	uc010xaf.1	+	1	864	c.864C>T	c.(862-864)TCC>TCT	p.S288S		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	288	Helical; Name=7; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						TGTGTAATTCCGTGATGGACC	0.463													72	105					0	0	1	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478457	14478457	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:14478457C>T	uc010xai.1	-	3		c.1107G>A				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						ACTTACTTTTCGTATTTTTCT	0.453													5	8					0	0	1	0	0
ABHD3	171586	broad.mit.edu	37	18	19244145	19244145	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:19244145A>G	uc002ktl.2	-	5	742	c.602T>C	c.(601-603)GTT>GCT	p.V201A	ABHD3_uc002ktm.2_Intron|ABHD3_uc010xao.1_RNA|ABHD3_uc002ktk.2_5'UTR	NM_138340	NP_612213	Q8WU67	ABHD3_HUMAN	alpha/beta hydrolase domain containing protein	201						integral to membrane	carboxylesterase activity			central_nervous_system(1)	1						ATGGTGAATAACTGTCTCCAA	0.423													26	36					0	0	1	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995558	19995558	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:19995558G>A	uc002ktv.1	-	1	2321	c.2217C>T	c.(2215-2217)TTC>TTT	p.F739F		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	739	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGGCTGGGGGGAAAAATGCAG	0.498													19	31					0	0	1	0	0
DSG3	1830	broad.mit.edu	37	18	29052749	29052749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:29052749C>T	uc002kws.2	+	14	2208	c.2099C>T	c.(2098-2100)TCT>TTT	p.S700F	DSG3_uc002kwt.2_5'Flank	NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	700	Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding			skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			ATGGAAAGTTCTGGTAAGTGG	0.318													15	38					0	0	1	0	0
DSG2	1829	broad.mit.edu	37	18	29126391	29126391	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:29126391C>T	uc002kwu.3	+	15	3230	c.3042C>T	c.(3040-3042)GTC>GTT	p.V1014V	uc002kwv.3_Intron	NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	1014	Desmoglein repeat 5.|Cytoplasmic (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			TACCTTACGTCATGGTGAGGG	0.502													35	39					0	0	1	0	0
KLHL14	57565	broad.mit.edu	37	18	30275462	30275462	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:30275462A>G	uc002kxm.1	-	4	1511	c.1123T>C	c.(1123-1125)TTC>CTC	p.F375L	KLHL14_uc010dmd.1_5'UTR	NM_020805	NP_065856	Q9P2G3	KLH14_HUMAN	kelch-like 14	375	Kelch 2.					cytosol|endoplasmic reticulum membrane				ovary(1)	1						CCCAACACGAACAAGAAGTTT	0.403													23	37					0	0	1	0	0
ASXL3	80816	broad.mit.edu	37	18	31322862	31322862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:31322862C>T	uc010dmg.1	+	12	3105	c.3050C>T	c.(3049-3051)TCC>TTC	p.S1017F	ASXL3_uc002kxq.2_Missense_Mutation_p.S724F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1017					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						ATTCAGCTTTCCAAAATTGGG	0.433													9	13					0	0	1	0	0
SYT4	6860	broad.mit.edu	37	18	40850388	40850388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:40850388C>T	uc002law.2	-	4	1565	c.1196G>A	c.(1195-1197)GGA>GAA	p.G399E	SYT4_uc010dng.2_RNA|SYT4_uc010xcm.1_Missense_Mutation_p.G381E|SYT4_uc010dnh.2_RNA	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	399	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						TCCACCAGTTCCTTCTGCTGC	0.493													92	170					0	0	1	0	0
SETBP1	26040	broad.mit.edu	37	18	42532894	42532894	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:42532894C>T	uc010dni.2	+	4	3885	c.3589C>T	c.(3589-3591)CTC>TTC	p.L1197F		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	1197						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		AGACAAAGAGCTCCCGCTGGT	0.542									Schinzel-Giedion_syndrome				23	65					0	0	1	0	0
SMAD2	4087	broad.mit.edu	37	18	45371801	45371801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:45371801G>A	uc002lcy.2	-	10	1438	c.1190C>T	c.(1189-1191)TCT>TTT	p.S397F	SMAD2_uc002lcz.2_Missense_Mutation_p.S397F|SMAD2_uc010xdc.1_Missense_Mutation_p.S367F|SMAD2_uc010xdd.1_Missense_Mutation_p.S367F	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	397	MH2.				anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						CTGATTAACAGACTGAGCCAG	0.378													53	73					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47479676	47479676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:47479676C>T	uc002leb.2	-	14	1994	c.1706G>A	c.(1705-1707)AGA>AAA	p.R569K	MYO5B_uc002lec.1_Missense_Mutation_p.R568K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	569	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CACCGTGTCTCTGTTTTTCTC	0.517													36	71					0	0	1	0	0
MYO5B	4645	broad.mit.edu	37	18	47581731	47581731	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:47581731G>A	uc002leb.2	-	2	333	c.45C>T	c.(43-45)ATC>ATT	p.I15I	MYO5B_uc002lec.1_Silent_p.I14I	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	15	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CAGGGTCAGGGATCCAGACCC	0.453													36	56					0	0	1	0	0
CCDC11	220136	broad.mit.edu	37	18	47778153	47778153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:47778153C>T	uc002lee.2	-	4	566	c.475G>A	c.(475-477)GAA>AAA	p.E159K		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	159										ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TCACAGCGTTCCCTGAAAGGA	0.433													52	113					0	0	1	0	0
MAPK4	5596	broad.mit.edu	37	18	48190868	48190868	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:48190868C>T	uc002lev.2	+	2	1540	c.540C>T	c.(538-540)TCC>TCT	p.S180S	MAPK4_uc010xdm.1_Intron|MAPK4_uc010doz.2_Silent_p.S180S	NM_002747	NP_002738	P31152	MK04_HUMAN	mitogen-activated protein kinase 4	180	Protein kinase.				cell cycle		ATP binding|MAP kinase activity			lung(4)|skin(2)	6		Colorectal(6;0.0297)		Colorectal(21;0.156)		AGCATTACTCCCACAAGGTAT	0.517													48	111					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50592420	50592420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:50592420G>A	uc002lfe.1	+	7	1732	c.1145G>A	c.(1144-1146)GGA>GAA	p.G382E	DCC_uc010xdr.1_Missense_Mutation_p.G230E|DCC_uc010dpf.1_Missense_Mutation_p.G37E	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	382	Extracellular (Potential).|Ig-like C2-type 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CCCTAGGGAGGAAGCAACTTA	0.413													53	117					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50683882	50683882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:50683882G>A	uc002lfe.1	+	8	2005	c.1418G>A	c.(1417-1419)AGG>AAG	p.R473K	DCC_uc010xdr.1_Missense_Mutation_p.R321K|DCC_uc010dpf.1_Missense_Mutation_p.R128K	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	473	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GGTGACAACAGGTAGGTGATG	0.478													21	27					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50918201	50918201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:50918201G>A	uc002lfe.1	+	17	3219	c.2632G>A	c.(2632-2634)GTG>ATG	p.V878M	DCC_uc010xdr.1_Missense_Mutation_p.V706M|DCC_uc010dpf.1_Missense_Mutation_p.V513M	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	878	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		GACGTCTGAGGTGCGACTTTA	0.473													36	77					0	0	1	0	0
DCC	1630	broad.mit.edu	37	18	50976955	50976955	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:50976955C>T	uc002lfe.1	+	23	3902	c.3315C>T	c.(3313-3315)ACC>ACT	p.T1105T	DCC_uc010dpf.1_Silent_p.T740T	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1105	Helical; (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TTGTGGTCACCGTTGGTGTCA	0.542													29	44					0	0	1	0	0
TCF4	6925	broad.mit.edu	37	18	52895477	52895477	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:52895477C>T	uc002lfz.2	-	19	2595	c.1983G>A	c.(1981-1983)TCG>TCA	p.S661S	TCF4_uc002lfw.3_Silent_p.S505S|TCF4_uc010xdu.1_Silent_p.S531S|TCF4_uc010xdv.1_Silent_p.S531S|TCF4_uc002lfx.2_Silent_p.S594S|TCF4_uc010xdw.1_Silent_p.S531S|TCF4_uc002lfy.2_Silent_p.S619S|TCF4_uc010xdx.1_Silent_p.S637S|TCF4_uc010dph.1_Silent_p.S665S|TCF4_uc010xdy.1_Silent_p.S641S|TCF4_uc002lga.2_Silent_p.S767S|TCF4_uc002lgb.1_Silent_p.S501S|TCF4_uc010dpi.2_Silent_p.S671S|TCF4_uc002lfv.2_Silent_p.S444S	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	661					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		CCATGTGATTCGATGCGTCTC	0.488													40	63					0	0	1	0	0
TXNL1	9352	broad.mit.edu	37	18	54278258	54278258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:54278258G>A	uc002lgg.2	-	7	1055	c.806C>T	c.(805-807)CCA>CTA	p.P269L	TXNL1_uc010xdz.1_RNA|TXNL1_uc002lgh.2_RNA|TXNL1_uc002lgi.2_Missense_Mutation_p.P269L|TXNL1_uc002lgj.1_Missense_Mutation_p.P269L	NM_004786	NP_004777	O43396	TXNL1_HUMAN	thioredoxin-like 1	269	PITH.				cell redox homeostasis|electron transport chain|glycerol ether metabolic process|transport	cytoplasm	electron carrier activity|protein disulfide oxidoreductase activity				0				READ - Rectum adenocarcinoma(59;0.193)|Colorectal(16;0.211)		TGCCTGGACTGGAGTACCAAT	0.279													28	36					0	0	1	0	0
ALPK2	115701	broad.mit.edu	37	18	56202538	56202538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:56202538C>T	uc002lhj.3	-	5	5095	c.4881G>A	c.(4879-4881)ATG>ATA	p.M1627I	ALPK2_uc002lhk.1_Missense_Mutation_p.M958I	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1627							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TAGGTTCCTCCATTTTGTGGC	0.458													20	44					0	0	1	0	0
PIGN	23556	broad.mit.edu	37	18	59824980	59824980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:59824980G>A	uc002lii.3	-	5	731	c.283C>T	c.(283-285)CGG>TGG	p.R95W	PIGN_uc002lij.3_Missense_Mutation_p.R95W	NM_176787	NP_789744	O95427	PIGN_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	95	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	phosphotransferase activity, for other substituted phosphate groups			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5		Colorectal(73;0.187)				TGACCTGGCCGAGATTCTGTT	0.383													11	17					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61326740	61326740	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:61326740G>A	uc002ljg.2	-	3	270	c.244C>T	c.(244-246)CAT>TAT	p.H82Y	SERPINB3_uc002lji.2_Missense_Mutation_p.H82Y|SERPINB3_uc010dqa.2_Missense_Mutation_p.H82Y|SERPINB3_uc010dqb.2_Missense_Mutation_p.H82Y			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	82					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						AACTGGTGATGAACATTTCCT	0.368													40	77					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61326748	61326748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:61326748C>T	uc002ljg.2	-	3	262	c.236G>A	c.(235-237)GGA>GAA	p.G79E	SERPINB3_uc002lji.2_Missense_Mutation_p.G79E|SERPINB3_uc010dqa.2_Missense_Mutation_p.G79E|SERPINB3_uc010dqb.2_Missense_Mutation_p.G79E			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	79					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						ATGAACATTTCCTGACCTATC	0.378													26	87					0	0	1	0	0
SERPINB10	5273	broad.mit.edu	37	18	61600305	61600305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:61600305G>A	uc010xev.1	+	7	747	c.657G>A	c.(655-657)ATG>ATA	p.M219I	SERPINB10_uc010xew.1_Missense_Mutation_p.M219I	NM_005024	NP_005015	P48595	SPB10_HUMAN	serine (or cysteine) proteinase inhibitor, clade	219						cytoplasm|nucleus	serine-type endopeptidase inhibitor activity			lung(1)|kidney(1)|skin(1)	3		Esophageal squamous(42;0.131)				CAGTGCAAATGATGTTTATGA	0.348													41	65					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63476994	63476994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:63476994G>A	uc002ljz.2	+	3	590	c.265G>A	c.(265-267)GAA>AAA	p.E89K	CDH7_uc002lka.2_Missense_Mutation_p.E89K|CDH7_uc002lkb.2_Missense_Mutation_p.E89K	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	89	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CTTGTCAGGCGAAGGGGCAAG	0.443													26	76					0	0	1	0	0
CDH7	1005	broad.mit.edu	37	18	63477036	63477036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:63477036G>A	uc002ljz.2	+	3	632	c.307G>A	c.(307-309)GAT>AAT	p.D103N	CDH7_uc002lka.2_Missense_Mutation_p.D103N|CDH7_uc002lkb.2_Missense_Mutation_p.D103N	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	103	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GAACACTGGGGATATTCATGC	0.502													27	42					0	0	1	0	0
CDH19	28513	broad.mit.edu	37	18	64211364	64211364	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:64211364G>T	uc002lkc.1	-	7	1196	c.1058C>A	c.(1057-1059)TCC>TAC	p.S353Y	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Missense_Mutation_p.S353Y|CDH19_uc002lkd.2_Missense_Mutation_p.S353Y	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	353	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				GAAAGTGGTGGAAGCCTCAGT	0.423													19	27					4.96729e-08	4.99951e-08	1	1	0
DOK6	220164	broad.mit.edu	37	18	67365639	67365639	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:67365639G>A	uc002lkl.2	+	5	600	c.410_splice	c.e5-1	p.E137_splice		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6								insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				TCTCTTCACAGAGAGATTCAA	0.388													29	46					0	0	1	0	0
CNDP2	55748	broad.mit.edu	37	18	72173110	72173110	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:72173110C>T	uc002llm.1	+	4	393	c.231C>T	c.(229-231)CTC>CTT	p.L77L	CNDP2_uc002lln.1_Intron|CNDP2_uc002llo.2_Silent_p.L77L|CNDP2_uc002llp.1_5'Flank	NM_018235	NP_060705	Q96KP4	CNDP2_HUMAN	CNDP dipeptidase 2	77						cytoplasm	carboxypeptidase activity|metal ion binding|metallopeptidase activity|protein binding|tripeptidase activity			ovary(2)|skin(1)	3		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.22)		AGATCCCGCTCCCTCCTATTC	0.552													24	53					0	0	1	0	0
ZNF407	55628	broad.mit.edu	37	18	72353073	72353073	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:72353073C>T	uc002llw.2	+	2	4854	c.4797C>T	c.(4795-4797)GTC>GTT	p.V1599V	ZNF407_uc010xfc.1_Silent_p.V1599V|ZNF407_uc010dqu.1_Silent_p.V1599V	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1599	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		AGTGTCATGTCTGTGGGTGAG	0.463													56	96					0	0	1	0	0
ZNF516	9658	broad.mit.edu	37	18	74091637	74091637	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:74091637G>A	uc010dqx.1	-	3	2668	c.2433C>T	c.(2431-2433)TCC>TCT	p.S811S	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	811					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		GTCCGCTCCGGGAAAGGAAAA	0.612													33	53					0	0	1	0	0
ZNF236	7776	broad.mit.edu	37	18	74611020	74611020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:74611020C>T	uc002lmi.2	+	11	1928	c.1730C>T	c.(1729-1731)ACC>ATC	p.T577I	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	577	C2H2-type 13.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		AAATTTCGAACCTCAGGCCAT	0.388													34	76					0	0	1	0	0
ZNF236	7776	broad.mit.edu	37	18	74625730	74625730	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:74625730G>A	uc002lmi.2	+	18	3129	c.2931G>A	c.(2929-2931)AAG>AAA	p.K977K	ZNF236_uc002lmj.2_RNA	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	977	C2H2-type 18.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		AAGGCTTTAAGAAGTCCAGCC	0.488													26	58					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76754750	76754750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:76754750C>T	uc002lmt.2	+	2	2759	c.2759C>T	c.(2758-2760)CCG>CTG	p.P920L	SALL3_uc010dra.2_Missense_Mutation_p.P527L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	920					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TCCAAGTCCCCGGGCCTGGGC	0.602													10	7					0	0	1	0	0
ATP9B	374868	broad.mit.edu	37	18	76973991	76973992	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:76973991_76973992GG>AA	uc002lmx.2	+	11	1074_1075	c.1060_1061GG>AA	c.(1060-1062)GGA>AAA	p.G354K	ATP9B_uc002lmv.1_Intron|ATP9B_uc002lmw.1_Missense_Mutation_p.G354K|ATP9B_uc002lmy.1_RNA|ATP9B_uc002lmz.1_Missense_Mutation_p.G48K	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	354	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		CATTTATACCGGAAAAGAGACT	0.327													9	30					0	0	1	0	0
KCNG2	26251	broad.mit.edu	37	18	77659616	77659616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr18:77659616G>A	uc010xfl.1	+	2	1201	c.1201G>A	c.(1201-1203)GTC>ATC	p.V401I		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	401	Helical; Name=Segment S6; (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		GGCCTTCCCGGTCACCTCCAT	0.692													47	73					0	0	1	0	0
MED16	10025	broad.mit.edu	37	19	868150	868150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:868150G>A	uc002lqd.1	-	16	2736	c.2585C>T	c.(2584-2586)CCC>CTC	p.P862L	MED16_uc010drw.1_3'UTR|MED16_uc002lqe.2_3'UTR|MED16_uc002lqf.2_3'UTR	NM_005481	NP_005472	Q9Y2X0	MED16_HUMAN	mediator complex subunit 16	862					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	receptor activity|thyroid hormone receptor binding|thyroid hormone receptor coactivator activity|vitamin D receptor binding				0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGGGGTCCTGGGAGAGTGGTG	0.682													12	7					0	0	1	0	0
ATP8B3	148229	broad.mit.edu	37	19	1808278	1808278	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:1808278C>A	uc002ltw.2	-	5	693	c.459G>T	c.(457-459)CTG>CTT	p.L153L	ATP8B3_uc002ltv.2_Silent_p.L100L|ATP8B3_uc002ltx.2_RNA|ATP8B3_uc002lty.1_5'Flank|ATP8B3_uc002ltz.1_Silent_p.L100L	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	153	Helical; (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		actgctcgtacaggttcagcg	0.239													25	24					8.88839e-20	9.04175e-20	1	1	0
SF3A2	8175	broad.mit.edu	37	19	2247013	2247013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:2247013G>A	uc002lvg.2	+	7	660	c.538G>A	c.(538-540)GCC>ACC	p.A180T	AMH_uc002lvh.2_5'Flank	NM_007165	NP_009096	Q15428	SF3A2_HUMAN	splicing factor 3a, subunit 2	180					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex	nucleic acid binding|zinc ion binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGAGACCATTGCCTTCAAGGT	0.647													32	30					0	0	1	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2408369	2408369	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:2408369G>A	uc010xgx.1	+	7	756	c.756G>A	c.(754-756)ACG>ACA	p.T252T	TMPRSS9_uc002lvv.1_Silent_p.T286T	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	252	Extracellular (Potential).|Peptidase S1 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGACCCGACGAAGTGGGTGG	0.502													36	27					0	0	1	0	0
THOP1	7064	broad.mit.edu	37	19	2799783	2799783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:2799783G>A	uc002lwj.2	+	5	738	c.583G>A	c.(583-585)GAG>AAG	p.E195K	THOP1_uc010xgz.1_Missense_Mutation_p.E74K	NM_003249	NP_003240	P52888	THOP1_HUMAN	thimet oligopeptidase 1	195					proteolysis	cytoplasm	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACGCTCCAGGAGCTAGGTAG	0.627													8	87					0	0	1	0	0
TJP3	27134	broad.mit.edu	37	19	3739054	3739054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:3739054G>A	uc010xhv.1	+	12	1652	c.1652G>A	c.(1651-1653)CGA>CAA	p.R551Q	TJP3_uc010xhs.1_Missense_Mutation_p.R518Q|TJP3_uc010xht.1_Missense_Mutation_p.R482Q|TJP3_uc010xhu.1_Missense_Mutation_p.R527Q|TJP3_uc010xhw.1_Missense_Mutation_p.R537Q	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	532	SH3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		AGCCACGCACGAGGAGGCCAC	0.692													54	35					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4511009	4511009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:4511009G>A	uc002mar.1	-	3	2921	c.2921C>T	c.(2920-2922)GCT>GTT	p.A974V	PLIN4_uc010dub.1_5'UTR	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	974	27.|27 X 33 AA approximate tandem repeat.					lipid particle|plasma membrane					0						CATAAGCACAGCCTTGGAGGC	0.612													27	28					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4516634	4516634	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:4516634C>T	uc002mar.1	-	2	208	c.208G>A	c.(208-210)GAA>AAA	p.E70K		NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	70						lipid particle|plasma membrane					0						CTCACCTTTTCCGAAGGTTGC	0.637													6	0					0	0	1	0	0
LRG1	116844	broad.mit.edu	37	19	4540018	4540018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:4540018G>A	uc002mau.2	-	1	19	c.8C>T	c.(7-9)TCT>TTT	p.S3F	PLIN5_uc002mat.1_5'UTR	NM_052972	NP_443204	P02750	A2GL_HUMAN	leucine-rich alpha-2-glycoprotein 1 precursor	3						extracellular region|membrane				ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		TCTGCTCCAAGAGGACATGGT	0.577													90	128					0	0	1	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456627	5456627	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:5456627C>T	uc002mca.3	+	1	1202	c.1125C>T	c.(1123-1125)TCC>TCT	p.S375S		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	375	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		AGGACCCCTCCCTACCGGGCC	0.682													38	37					0	0	1	0	0
DENND1C	79958	broad.mit.edu	37	19	6480023	6480023	+	Silent	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:6480023C>G	uc002mfe.2	-	2	149	c.57G>C	c.(55-57)GCG>GCC	p.A19A	DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Intron	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	19						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						CAGGGCAGGCCGCTTCGAAGA	0.617													8	5					0	0	1	0	0
VAV1	7409	broad.mit.edu	37	19	6828894	6828894	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:6828894G>A	uc002mfu.1	+	13	1345	c.1248G>A	c.(1246-1248)CGG>CGA	p.R416R	VAV1_uc010xjh.1_Silent_p.R384R|VAV1_uc010dva.1_Silent_p.R416R|VAV1_uc002mfv.1_Silent_p.R361R	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	416	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity	p.R416R(1)		lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CGGTGGAACGGCGCTCCAAGA	0.612													21	29					0	0	1	0	0
EMR1	2015	broad.mit.edu	37	19	6908754	6908754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:6908754G>A	uc002mfw.2	+	10	1131	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K	EMR1_uc010dvc.2_Missense_Mutation_p.E365K|EMR1_uc010dvb.2_Missense_Mutation_p.E313K|EMR1_uc010xji.1_Missense_Mutation_p.E224K|EMR1_uc010xjj.1_Missense_Mutation_p.E188K	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	365	Ser/Thr-rich.|Extracellular (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					CAAAGTGTGTGAAAATAAAAC	0.383													35	28					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8136957	8136957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:8136957C>T	uc002mjf.2	-	62	8084	c.8063G>A	c.(8062-8064)CGA>CAA	p.R2688Q	FBN3_uc002mje.2_Missense_Mutation_p.R484Q	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2688						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						GGCACTGCGTCGTGGCCGGTC	0.637													59	58					0	0	1	0	0
FBN3	84467	broad.mit.edu	37	19	8136997	8136997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:8136997C>T	uc002mjf.2	-	62	8044	c.8023G>A	c.(8023-8025)GAA>AAA	p.E2675K	FBN3_uc002mje.2_Missense_Mutation_p.E471K	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2675						proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						ATCTTGCATTCGTAGCAGGCT	0.662													15	149					0	0	1	0	0
HNRNPM	4670	broad.mit.edu	37	19	8550496	8550496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:8550496G>A	uc010dwe.2	+	14	1264	c.1184G>A	c.(1183-1185)GGA>GAA	p.G395E	HNRNPM_uc010xke.1_Missense_Mutation_p.G341E|HNRNPM_uc010dwd.2_Missense_Mutation_p.G356E|HNRNPM_uc002mka.2_Missense_Mutation_p.G260E|HNRNPM_uc002mkb.1_5'Flank	NM_005968	NP_005959	P52272	HNRPM_HUMAN	heterogeneous nuclear ribonucleoprotein M	395	Poly-Gly.				alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|integral to plasma membrane|nuclear matrix|nucleolus|paraspeckles	nucleotide binding|protein domain specific binding|RNA binding				0						GGTGGAGGTGGAGGAAGCGTC	0.622													84	95					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8610545	8610545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:8610545C>T	uc002mkg.2	-	13	1459	c.1345G>A	c.(1345-1347)GAA>AAA	p.E449K	MYO1F_uc002mkh.2_3'UTR	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	449	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						AGCTTGTTTTCGATGAGGTCA	0.572													189	197					0	0	1	0	0
MYO1F	4542	broad.mit.edu	37	19	8618077	8618077	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:8618077C>T	uc002mkg.2	-	6	564	c.450G>A	c.(448-450)CTG>CTA	p.L150L	MYO1F_uc002mkh.2_Silent_p.L150L|MYO1F_uc010xkf.1_Silent_p.L150L	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	150	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						AGGCCTCGAGCAGCGGGTTGG	0.592													16	143					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	8994513	8994513	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:8994513G>A	uc002mkp.2	-	64	41583	c.41379C>T	c.(41377-41379)TTC>TTT	p.F13793F	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Silent_p.F610F|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13795	Extracellular (Potential).|SEA 12.|ANK 1.			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTTGAGGGTGAATAGTATCA	0.448													48	50					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9049034	9049034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9049034G>A	uc002mkp.2	-	5	32801	c.32597C>T	c.(32596-32598)CCA>CTA	p.P10866L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10868	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTTGGAGTTGGAACAGCTGA	0.458													46	46					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9056568	9056568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9056568C>T	uc002mkp.2	-	3	31082	c.30878G>A	c.(30877-30879)GGA>GAA	p.G10293E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10295	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCGTGGAACTCCAGTGGTGGC	0.517													13	84					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9057400	9057400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9057400C>T	uc002mkp.2	-	3	30250	c.30046G>A	c.(30046-30048)GAA>AAA	p.E10016K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10018	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTAGTTTTTTCCACAAAGAGA	0.438													14	17					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9064771	9064771	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9064771C>A	uc002mkp.2	-	3	22879	c.22675G>T	c.(22675-22677)GCA>TCA	p.A7559S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7561	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACAGTGTTTGCTTCTGTGGCT	0.493													43	44					4.64027e-19	4.71057e-19	1	1	0
MUC16	94025	broad.mit.edu	37	19	9088103	9088103	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9088103T>C	uc002mkp.2	-	1	3916	c.3712A>G	c.(3712-3714)ACC>GCC	p.T1238A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1238	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGCTGAGGGTTGGAAGTCCC	0.507													46	308					0	0	1	0	0
OR1M1	125963	broad.mit.edu	37	19	9204289	9204289	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9204289C>T	uc010xkj.1	+	1	369	c.369C>T	c.(367-369)TTC>TTT	p.F123F		NM_001004456	NP_001004456	Q8NGA1	OR1M1_HUMAN	olfactory receptor, family 1, subfamily M,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3						ATGACCGGTTCGTGGCCATCT	0.552													38	38					0	0	1	0	0
OR7D2	162998	broad.mit.edu	37	19	9297370	9297370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9297370C>T	uc002mkz.1	+	1	1101	c.913C>T	c.(913-915)CTC>TTC	p.L305F		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	305	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						GGGGAGTCTCCTCAGCAGGGC	0.507													29	48					0	0	1	0	0
ZNF177	7730	broad.mit.edu	37	19	9490759	9490759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:9490759G>A	uc002mli.2	+	11	943	c.280G>A	c.(280-282)GAT>AAT	p.D94N	ZNF177_uc002mlj.2_5'UTR|ZNF177_uc002mlk.2_Missense_Mutation_p.D94N	NM_003451	NP_003442	Q13360	ZN177_HUMAN	zinc finger protein 177	94					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TAAACCAAAAGATACAATTGC	0.388													36	19					0	0	1	0	0
C3P1	388503	broad.mit.edu	37	19	10157488	10157488	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:10157488G>A	uc010dwx.1	+	9		c.1322G>A				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						GGCTCTGGAGGAAGTTCACTC	0.537													29	31					0	0	1	0	0
PPAN	56342	broad.mit.edu	37	19	10221786	10221786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:10221786C>T	uc002mmz.1	+	12	1473	c.1367C>T	c.(1366-1368)TCC>TTC	p.S456F	PPAN-P2RY11_uc010xla.1_Intron|PPAN-P2RY11_uc002mna.2_Intron|P2RY11_uc002mnc.2_5'Flank|PPAN_uc002mnb.1_Missense_Mutation_p.S403F	NM_020230	NP_064615	Q9NQ55	SSF1_HUMAN	peter pan homolog	456					RNA splicing	nucleolus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(20;2.19e-08)|Epithelial(33;1.76e-05)|all cancers(31;3.54e-05)			AGAGGGGCTTCCCGGGATGGT	0.682													3	16					0	0	1	0	0
RAVER1	125950	broad.mit.edu	37	19	10434089	10434089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:10434089G>A	uc002moa.2	-	4	1041	c.961C>T	c.(961-963)CGC>TGC	p.R321C		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	304						cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			AGCATACTGCGGCCGGGGGGC	0.731													5	2					0	0	1	0	0
DOCK6	57572	broad.mit.edu	37	19	11311656	11311656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:11311656C>T	uc002mqs.3	-	45	5802	c.5761G>A	c.(5761-5763)GAG>AAG	p.E1921K	DOCK6_uc002mqr.3_Missense_Mutation_p.E321K|DOCK6_uc010xlq.1_Missense_Mutation_p.E1260K	NM_020812	NP_065863	Q96HP0	DOCK6_HUMAN	dedicator of cytokinesis 6	1921	DHR-2.				blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						GGGTCCTGCTCGGTGGCAAAG	0.617													29	22					0	0	1	0	0
CNN1	1264	broad.mit.edu	37	19	11651918	11651918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:11651918G>A	uc002msc.1	+	2	255	c.91G>A	c.(91-93)GAG>AAG	p.E31K	CNN1_uc010xmb.1_5'UTR|CNN1_uc010xmc.1_5'UTR	NM_001299	NP_001290	P51911	CNN1_HUMAN	calponin 1, basic, smooth muscle	31	CH.				actomyosin structure organization|regulation of smooth muscle contraction	cytoskeleton	actin binding|calmodulin binding				0						CCACCAGCGGGAGCAGGAGCT	0.627													10	13					0	0	1	0	0
ZNF439	90594	broad.mit.edu	37	19	11977055	11977055	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:11977055C>T	uc002mss.2	+	1	212	c.84C>T	c.(82-84)TTC>TTT	p.F28F	ZNF439_uc002msr.2_Intron	NM_152262	NP_689475	Q8NDP4	ZN439_HUMAN	zinc finger protein 439	28	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CTGTGAACTTCACCCAGGAGG	0.493													82	90					0	0	1	0	0
ZNF844	284391	broad.mit.edu	37	19	12187891	12187891	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:12187891T>C	uc002mtb.2	+	4	2099	c.1956T>C	c.(1954-1956)GTT>GTC	p.V652V	ZNF844_uc010dym.1_Silent_p.V495V	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	652					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCATTCAGTTTGCCTGGTTC	0.413													2	13					0	0	1	0	0
ZNF564	163050	broad.mit.edu	37	19	12638133	12638133	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:12638133G>C	uc002mty.2	-	4	999	c.789C>G	c.(787-789)GAC>GAG	p.D263E	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	263	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AACTGGGGCGGTCAAAGGCTT	0.398													43	48					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12963181	12963181	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:12963181A>G	uc002mvm.2	+	10	1177	c.1049A>G	c.(1048-1050)AAC>AGC	p.N350S	MAST1_uc002mvk.2_Missense_Mutation_p.N346S	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	350					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GGTGGTTCCAACACCCCTGAG	0.393													37	39					0	0	1	0	0
MAST1	22983	broad.mit.edu	37	19	12975863	12975863	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:12975863C>T	uc002mvm.2	+	14	1637	c.1509C>T	c.(1507-1509)CTC>CTT	p.L503L		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	503	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						CCTACAGCCTCCTTATCACCT	0.557													44	39					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13397556	13397556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:13397556G>A	uc010dze.2	-	20	3553	c.3317C>T	c.(3316-3318)CCC>CTC	p.P1106L	CACNA1A_uc010dzc.2_Missense_Mutation_p.P631L|CACNA1A_uc002mwy.3_Missense_Mutation_p.P1105L|CACNA1A_uc010xne.1_Missense_Mutation_p.P634L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	1106	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GGCCAGCATGGGGCCGGGGTC	0.726													11	12					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14150599	14150600	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:14150599_14150600GG>AA	uc002mxx.2	+	4	834_835	c.411_412GG>AA	c.(409-414)GTGGAC>GTAAAC	p.D138N		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	138	Extracellular (Potential).|Fibronectin type-III 1.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						GCCCTGACGTGGACTTTTCCGA	0.604													11	74					0	0	1	0	0
OR7C1	26664	broad.mit.edu	37	19	14910263	14910263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:14910263G>A	uc010xnz.1	-	1	686	c.686C>T	c.(685-687)TCC>TTC	p.S229F		NM_198944	NP_945182	O76099	OR7C1_HUMAN	olfactory receptor, family 7, subfamily C,	229	Cytoplasmic (Potential).				sensory perception of smell|spermatogenesis	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						CCCAGCTGAGGAAATCCTCAG	0.448													23	18					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15355557	15355557	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:15355557T>C	uc002nar.2	-	12	2397	c.2175A>G	c.(2173-2175)TCA>TCG	p.S725S		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	725					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			CCTTCTTTTTTGACTTCGGAG	0.567			T	NUT|C15orf55	lethal midline carcinoma of young people								14	151					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	15871692	15871692	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:15871692G>A	uc002nbo.2	-	9		c.1315C>T								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		GAGTTGAAGCGGAAGGGGTTG	0.577													32	28					0	0	1	0	0
CYP4F11	57834	broad.mit.edu	37	19	16034838	16034838	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:16034838C>T	uc002nbu.2	-	7	738	c.702G>A	c.(700-702)AAG>AAA	p.K234K	CYP4F11_uc010eab.1_Silent_p.K234K|CYP4F11_uc002nbt.2_Silent_p.K234K	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	234					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GCTGGTTTCTCTTTTCTACAA	0.512													7	92					0	0	1	0	0
CHERP	10523	broad.mit.edu	37	19	16641421	16641421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:16641421G>A	uc002nei.1	-	7	925	c.851C>T	c.(850-852)CCA>CTA	p.P284L	MED26_uc002nee.2_Intron	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	284	Gln-rich.|CID.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						CCCCAGGGCTGGGCTCTGTAG	0.632													16	200					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17737587	17737587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:17737587G>A	uc002nhd.2	-	34	4192	c.4192C>T	c.(4192-4194)CCG>TCG	p.P1398S		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1310					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TCAATGTGCGGCTGGAAGCTG	0.557													3	29					0	0	1	0	0
UNC13A	23025	broad.mit.edu	37	19	17740067	17740067	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:17740067G>A	uc002nhd.2	-	31	3999	c.3999C>T	c.(3997-3999)TCC>TCT	p.S1333S		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	1245					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						CCTTCTCCTTGGAGCAGTAGG	0.577													8	5					0	0	1	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922646	17922646	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:17922646C>T	uc002nhk.1	+	3	919	c.834C>T	c.(832-834)TTC>TTT	p.F278F	B3GNT3_uc002nhl.1_Silent_p.F278F|B3GNT3_uc010ebd.1_Silent_p.F278F|B3GNT3_uc010ebe.1_Silent_p.F278F	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	278	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						TGTCCCGCTTCACGGCCGCTG	0.577													9	91					0	0	1	0	0
SSBP4	170463	broad.mit.edu	37	19	18542189	18542189	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:18542189C>T	uc002niy.2	+	6	634	c.396C>T	c.(394-396)CCC>CCT	p.P132P	SSBP4_uc010ebp.2_Silent_p.P132P|SSBP4_uc002niz.2_Intron	NM_032627	NP_116016	Q9BWG4	SSBP4_HUMAN	single stranded DNA binding protein 4 isoform a	132	Pro-rich.					nucleus	single-stranded DNA binding				0						AGCCGTCCCCCCACAACCCCA	0.701													12	4					0	0	1	0	0
KLHL26	55295	broad.mit.edu	37	19	18778810	18778810	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:18778810C>T	uc002njz.1	+	3	630	c.603C>T	c.(601-603)TTC>TTT	p.F201F		NM_018316	NP_060786	Q53HC5	KLH26_HUMAN	kelch-like 26	201	BACK.									ovary(1)	1						AGGAGGATTTCCTGCGCCTGC	0.662													40	39					0	0	1	0	0
CRTC1	23373	broad.mit.edu	37	19	18853836	18853836	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:18853836G>A	uc002nkb.3	+	2	331	c.243G>A	c.(241-243)CAG>CAA	p.Q81Q	CRTC1_uc010ebv.2_Silent_p.Q81Q	NM_015321	NP_056136	Q6UUV9	CRTC1_HUMAN	mucoepidermoid carcinoma translocated 1 isoform	81					interspecies interaction between organisms|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	cAMP response element binding protein binding|protein binding		CRTC1/MAML2(516)	salivary_gland(474)|lung(35)|thyroid(4)|breast(3)|skin(2)|ovary(1)	519						TGCCCTTCCAGGTGAGTGCCC	0.657													19	29					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19337652	19337652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:19337652C>T	uc002nlz.2	+	7	1529	c.1430C>T	c.(1429-1431)CCT>CTT	p.P477L	NCAN_uc010ecc.1_Missense_Mutation_p.P41L	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	477					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			GACCCTATGCCTAGGAGAAGG	0.662													6	41					0	0	1	0	0
YJEFN3	374887	broad.mit.edu	37	19	19648222	19648222	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:19648222C>T	uc002nmt.1	+	7	811	c.789C>T	c.(787-789)TTC>TTT	p.F263F	YJEFN3_uc010ecf.1_Silent_p.F213F|YJEFN3_uc002nmu.1_RNA|CILP2_uc002nmv.3_5'Flank|CILP2_uc002nmw.3_5'Flank	NM_198537	NP_940939	A6XGL0	YJEN3_HUMAN	YjeF N-terminal domain containing 3	263	YjeF N-terminal.										0						CTGGCCGCTTCTCCGGGCGCC	0.716													5	5					0	0	1	0	0
ZNF430	80264	broad.mit.edu	37	19	21205628	21205628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:21205628G>A	uc002npj.2	+	2	147	c.37G>A	c.(37-39)GAA>AAA	p.E13K	ZNF430_uc002npk.2_Missense_Mutation_p.E13K	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	13					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						TCCTCTCAAGGAAGCAAGTGG	0.453													22	43					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	22780106	22780106	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:22780106G>A	uc002nqu.3	+	2		c.184G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		ATCAGTGGAGGAACAGCCCTG	0.338													37	32					0	0	1	0	0
ZNF492	57615	broad.mit.edu	37	19	22846622	22846622	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:22846622C>T	uc002nqw.3	+	4	395	c.151C>T	c.(151-153)CGA>TGA	p.R51*		NM_020855	NP_065906	Q9P255	ZN492_HUMAN	zinc finger protein 492	51					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.0266)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00203)|Hepatocellular(1079;0.244)				TTATTTTGCCCGAGACCTTTG	0.279													7	5					0	0	1	0	0
RHPN2	85415	broad.mit.edu	37	19	33503559	33503559	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:33503559C>T	uc002nuf.2	-	5	528	c.462G>A	c.(460-462)CTG>CTA	p.L154L	RHPN2_uc010xro.1_Silent_p.L3L|RHPN2_uc002nue.2_5'UTR	NM_033103	NP_149094	Q8IUC4	RHPN2_HUMAN	rhophilin, Rho GTPase binding protein 2	154	BRO1.				signal transduction	perinuclear region of cytoplasm	protein binding			central_nervous_system(5)|ovary(1)	6	Esophageal squamous(110;0.137)					TTACTTGTCTCAGATCCATAA	0.408													44	37					0	0	1	0	0
GPATCH1	55094	broad.mit.edu	37	19	33585094	33585094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:33585094G>A	uc002nug.1	+	5	786	c.472G>A	c.(472-474)GAA>AAA	p.E158K		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	158	G-patch.					catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					TGTTGGTTTCGAATTGCTAAG	0.393													26	42					0	0	1	0	0
LRP3	4037	broad.mit.edu	37	19	33696318	33696318	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:33696318G>A	uc010edh.2	+	5	735	c.642G>A	c.(640-642)GGG>GGA	p.G214G	LRP3_uc010xrp.1_Silent_p.G88G|LRP3_uc002nuk.3_Silent_p.G88G	NM_002333	NP_002324	O75074	LRP3_HUMAN	low density lipoprotein receptor-related protein	214	Extracellular (Potential).|LDL-receptor class A 2.				receptor-mediated endocytosis	coated pit|integral to membrane	receptor activity			pancreas(2)|ovary(1)	3	Esophageal squamous(110;0.137)					TGTGCCCCGGGGGGACCTTCC	0.726													8	11					0	0	1	0	0
GRAMD1A	57655	broad.mit.edu	37	19	35514221	35514221	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:35514221C>T	uc010xse.1	+	18	2072	c.1935C>T	c.(1933-1935)TCC>TCT	p.S645S	GRAMD1A_uc002nxk.2_Silent_p.S634S|GRAMD1A_uc002nxl.2_Silent_p.S407S|GRAMD1A_uc010xsf.1_Silent_p.S646S|GRAMD1A_uc002nxm.1_RNA|GRAMD1A_uc002nxn.1_Silent_p.S256S	NM_020895	NP_065946	Q96CP6	GRM1A_HUMAN	GRAM domain containing 1A isoform 1	645						integral to membrane					0	all_lung(56;2.66e-08)|Lung NSC(56;4.13e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			CCTTTGAGTCCTGGCACAGCC	0.647													92	287					0	0	1	0	0
ATP4A	495	broad.mit.edu	37	19	36046382	36046382	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:36046382G>C	uc002oal.1	-	14	2146	c.2117C>G	c.(2116-2118)CCC>CGC	p.P706R	ATP4A_uc010eee.1_5'UTR	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	706	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	CTTCTGCTGGGGGCTGGTGCG	0.662													14	20					0	0	1	0	0
PRODH2	58510	broad.mit.edu	37	19	36291082	36291082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:36291082G>A	uc002obx.1	-	11	1487	c.1469C>T	c.(1468-1470)TCC>TTC	p.S490F	uc002obw.1_5'Flank	NM_021232	NP_067055	Q9UF12	PROD2_HUMAN	kidney and liver proline oxidase 1	490					glutamate biosynthetic process|proline catabolic process		proline dehydrogenase activity			ovary(2)	2	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTCCTCCAAGGAGCCATAGGG	0.483													3	7					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36335128	36335128	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:36335128G>T	uc002oby.2	-	16	2089	c.2089C>A	c.(2089-2091)CGC>AGC	p.R697S		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	697	Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			GACAGGATGCGATGCCGGGGG	0.672													3	35					0.150653	0.150807	1	1	0
NPHS1	4868	broad.mit.edu	37	19	36339032	36339032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:36339032C>T	uc002oby.2	-	11	1351	c.1351G>A	c.(1351-1353)GAG>AAG	p.E451K		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	451	Extracellular (Potential).|Ig-like C2-type 5.				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TTCTGGCCCTCTGGGGGACCC	0.617													26	100					0	0	1	0	0
NPHS1	4868	broad.mit.edu	37	19	36342239	36342239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:36342239C>T	uc002oby.2	-	3	322	c.322G>A	c.(322-324)GAG>AAG	p.E108K		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	108	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CACTCATACTCCGCGTCATCG	0.647													4	13					0	0	1	0	0
Unknown	0	broad.mit.edu	37	19	36913503	36913503	+	RNA	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:36913503T>C	uc002odz.1	+	1		c.1428T>C								Homo sapiens cDNA FLJ35203 fis, clone PLACE6018441, moderately similar to Mus musculus peroxisomal long chain acyl-CoA thioesterase Ib (Pte1b) gene.																		GGGACTGGGCTTTACACTGAG	0.517													7	38					0	0	1	0	0
ZNF566	84924	broad.mit.edu	37	19	36940091	36940091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:36940091G>A	uc002oea.3	-	5	1127	c.1045C>T	c.(1045-1047)CGT>TGT	p.R349C	ZNF566_uc010xte.1_Missense_Mutation_p.R349C|ZNF566_uc010xtf.1_Missense_Mutation_p.R350C|ZNF566_uc002oeb.3_Missense_Mutation_p.R349C|ZNF566_uc002oec.3_Missense_Mutation_p.R245C|ZNF566_uc010xtg.1_Missense_Mutation_p.R245C	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	349	C2H2-type 5.|C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					GAGCCAGAACGAAAAGCCTTT	0.403													27	32					0	0	1	0	0
ZNF260	339324	broad.mit.edu	37	19	37006080	37006080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:37006080G>A	uc002oee.1	-	4	905	c.61C>T	c.(61-63)CAT>TAT	p.H21Y	ZNF260_uc002oed.1_Missense_Mutation_p.H18Y|ZNF260_uc010eey.1_Missense_Mutation_p.H18Y|ZNF260_uc002oef.1_Missense_Mutation_p.H18Y	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	21					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TCTCCAGTATGAATTTGATCA	0.353													10	36					0	0	1	0	0
ZNF345	25850	broad.mit.edu	37	19	37367916	37367916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:37367916C>T	uc002oex.2	+	3	562	c.184C>T	c.(184-186)CTT>TTT	p.L62F	ZNF345_uc002oey.3_Missense_Mutation_p.L62F|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	62	C2H2-type 1.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TGAGAAACTCCTTGAATGTAA	0.393													40	49					0	0	1	0	0
ZNF585B	92285	broad.mit.edu	37	19	37677466	37677466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:37677466G>A	uc002ofq.2	-	5	1227	c.973C>T	c.(973-975)CCC>TCC	p.P325S	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Missense_Mutation_p.P139S	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	325					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CATATATAGGGCTTCACTCTT	0.378													63	125					0	0	1	0	0
PPP1R14A	94274	broad.mit.edu	37	19	38741973	38741973	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:38741973C>A	uc002ohq.2	-	4	622	c.429G>T	c.(427-429)CGG>CGT	p.R143R	PPP1R14A_uc010efv.2_Silent_p.R116R	NM_033256	NP_150281	Q96A00	PP14A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	143					regulation of phosphorylation	cytoplasm	protein binding|protein phosphatase inhibitor activity				0	all_cancers(60;9.57e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGTGAGCAGTCCGGGCCCGGT	0.627													9	9					0.0581538	0.0582922	1	1	0
CATSPERG	57828	broad.mit.edu	37	19	38850153	38850153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:38850153G>A	uc002oih.3	+	14	1627	c.1540G>A	c.(1540-1542)GAA>AAA	p.E514K	CATSPERG_uc002oig.3_Missense_Mutation_p.E474K|CATSPERG_uc002oif.3_Missense_Mutation_p.E154K|CATSPERG_uc010efw.2_RNA	NM_021185	NP_067008	Q6ZRH7	CTSRG_HUMAN	cation channel, sperm-associated, gamma	514	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(1)|skin(1)	2						CTTCCCCAAGGAACTGTCCAT	0.587													27	52					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38949968	38949968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:38949968G>A	uc002oit.2	+	19	2480	c.2350G>A	c.(2350-2352)GCT>ACT	p.A784T	RYR1_uc002oiu.2_Missense_Mutation_p.A784T	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	784	Cytoplasmic.|B30.2/SPRY 1.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CAGCTTCTCGGCTGGTGTCAA	0.612													14	33					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38956829	38956829	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:38956829A>T	uc002oit.2	+	24	3099	c.2969A>T	c.(2968-2970)AAT>ATT	p.N990I	RYR1_uc002oiu.2_Missense_Mutation_p.N990I	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	990	2.|Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGGCAGAAAATGGGCACAAC	0.657													23	25					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38964189	38964189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:38964189G>A	uc002oit.2	+	28	4068	c.3938G>A	c.(3937-3939)GGC>GAC	p.G1313D	RYR1_uc002oiu.2_Missense_Mutation_p.G1313D	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1313	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GCACCTCCTGGCCTGCAGCCC	0.692													6	4					0	0	1	0	0
CAPN12	147968	broad.mit.edu	37	19	39227957	39227957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:39227957C>T	uc002ojd.1	-	10	1510	c.1201G>A	c.(1201-1203)GAA>AAA	p.E401K	CAPN12_uc010egd.1_5'Flank|CAPN12_uc002ojc.1_5'Flank	NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	401	Domain III.				proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CAGGGCCCTTCCTCATCCTCG	0.642													8	5					0	0	1	0	0
CAPN12	147968	broad.mit.edu	37	19	39234776	39234776	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:39234776G>A	uc002ojd.1	-	1	339	c.30C>T	c.(28-30)ATC>ATT	p.I10I		NM_144691	NP_653292	Q6ZSI9	CAN12_HUMAN	calpain 12	10					proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2	all_cancers(60;2.87e-05)|Ovarian(47;0.0454)		Lung(45;0.00416)|LUSC - Lung squamous cell carcinoma(53;0.00741)			CCACGAGCTGGATGGTGACCC	0.652													64	62					0	0	1	0	0
SARS2	54938	broad.mit.edu	37	19	39412175	39412175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:39412175G>A	uc002oka.2	-	4	686	c.526C>T	c.(526-528)CCA>TCA	p.P176S	SARS2_uc002ojz.2_5'UTR|SARS2_uc010xup.1_Missense_Mutation_p.P178S|SARS2_uc002okb.2_Missense_Mutation_p.P176S|SARS2_uc010xuq.1_Missense_Mutation_p.P176S|SARS2_uc010xur.1_RNA	NM_017827	NP_060297	Q9NP81	SYSM_HUMAN	seryl-tRNA synthetase 2 isoform b precursor	176					seryl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|serine-tRNA ligase activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(60;2.74e-06)|all_epithelial(25;4.36e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			ACCACGTCTGGGTGGGTCTGG	0.657													13	32					0	0	1	0	0
PAPL	390928	broad.mit.edu	37	19	39597622	39597622	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:39597622C>T	uc002oki.2	+	12	1423	c.1149C>T	c.(1147-1149)TTC>TTT	p.F383F	PAPL_uc010egl.2_Intron	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	383						extracellular region	acid phosphatase activity|metal ion binding				0						TTGCTGTCTTCCCGAGGCCCT	0.642													12	52					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39798497	39798497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:39798497G>A	uc002okw.2	-	2	2092	c.2092C>T	c.(2092-2094)CCG>TCG	p.P698S		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	698	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			TGCGGCCTCGGCCGGGCCGCG	0.721													5	10					0	0	1	0	0
LRFN1	57622	broad.mit.edu	37	19	39804912	39804912	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:39804912C>T	uc002okw.2	-	1	1065	c.1065G>A	c.(1063-1065)CTG>CTA	p.L355L		NM_020862	NP_065913	Q9P244	LRFN1_HUMAN	leucine rich repeat and fibronectin type III	355	Ig-like.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic density|postsynaptic membrane				ovary(2)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			TGGTCACATCCAGCGTCCCGT	0.682													10	19					0	0	1	0	0
PAF1	54623	broad.mit.edu	37	19	39879777	39879778	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:39879777_39879778GG>AA	uc002old.2	-	7	697_698	c.522_523CC>TT	c.(520-525)AGCCAG>AGTTAG	p.Q175*	PAF1_uc002ole.1_Nonsense_Mutation_p.Q165*|PAF1_uc010xuv.1_RNA|MED29_uc010xuw.1_5'Flank|MED29_uc002olf.2_5'Flank|MED29_uc010xux.1_5'Flank	NM_019088	NP_061961	Q8N7H5	PAF1_HUMAN	Paf1, RNA polymerase II associated factor,	175					histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			pancreas(1)	1	all_cancers(60;9.14e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;1.88e-06)|Ovarian(47;0.0512)		Epithelial(26;9.6e-28)|all cancers(26;9.14e-25)|Lung(45;0.000168)|LUSC - Lung squamous cell carcinoma(53;0.000199)			GCTGTGATCTGGCTATCCCTGT	0.505													68	113					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40398498	40398498	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:40398498A>G	uc002omp.3	-	14	6477	c.6469T>C	c.(6469-6471)TTC>CTC	p.F2157L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2157	VWFD 5.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			AGAGTGACGAACACGCCGTCC	0.373													4	36					0	0	1	0	0
PLD3	23646	broad.mit.edu	37	19	40884017	40884017	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:40884017C>T	uc002onm.3	+	13	1808	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S	PLD3_uc002onj.3_Silent_p.S470S|PLD3_uc002onk.3_Silent_p.S470S|PLD3_uc002onl.3_Silent_p.S470S|PLD3_uc002onn.2_Silent_p.S470S	NM_001031696	NP_001026866	Q8IV08	PLD3_HUMAN	phospholipase D3	470	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum membrane|integral to membrane	NAPE-specific phospholipase D activity|phospholipase D activity|protein binding			skin(2)|ovary(1)	3			Lung(22;0.000636)|LUSC - Lung squamous cell carcinoma(20;0.00248)			ACTGGGACTCCCCTTACAGCC	0.672													46	166					0	0	1	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442126	41442126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:41442126G>A	uc010ehg.1	+	2	304	c.296G>A	c.(295-297)GGA>GAA	p.G99E	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Missense_Mutation_p.G99E|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						TCTGGCCGGGGAAAAATCGTC	0.607													24	27					0	0	1	0	0
CYP2A13	1553	broad.mit.edu	37	19	41600922	41600922	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:41600922A>G	uc002opt.2	+	8	1229	c.1220A>G	c.(1219-1221)AAC>AGC	p.N407S		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	407					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	TTCTTCTCCAACCCCCGGGAC	0.542													33	140					0	0	1	0	0
GRIK5	2901	broad.mit.edu	37	19	42507525	42507525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:42507525C>T	uc002osj.1	-	18	2508	c.2473G>A	c.(2473-2475)GAA>AAA	p.E825K	GRIK5_uc002osi.1_Missense_Mutation_p.E397K	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	825	Cytoplasmic (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	CATATGAATTCCATGACCGCC	0.592													31	69					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42840485	42840485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:42840485C>T	uc002otl.3	+	6	1866	c.1231C>T	c.(1231-1233)CCC>TCC	p.P411S	MEGF8_uc002otm.3_5'Flank	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	411	Extracellular (Potential).|Kelch 4.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TGGACACCGGCCCTCCACTGC	0.637													13	20					0	0	1	0	0
MEGF8	1954	broad.mit.edu	37	19	42858152	42858152	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:42858152C>T	uc002otl.3	+	21	4421	c.3786C>T	c.(3784-3786)TCC>TCT	p.S1262S	MEGF8_uc002otm.3_Silent_p.S870S	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	1329	Extracellular (Potential).|CUB 2.					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				TCACCTTCTCCCCCGACAGCA	0.652													8	14					0	0	1	0	0
PSG6	5675	broad.mit.edu	37	19	43411959	43411959	+	Missense_Mutation	SNP	C	T	T	rs146009558		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:43411959C>T	uc002ovj.1	-	4	806	c.754G>A	c.(754-756)GAG>AAG	p.E252K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E259K|PSG6_uc002ovi.2_Missense_Mutation_p.E253K|PSG6_uc010xwk.1_Missense_Mutation_p.E92K|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Missense_Mutation_p.E42K|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Missense_Mutation_p.E252K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	252	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TCCTTCTTCTCCCTGGGGTTT	0.507													59	215					0	0	1	0	0
PSG7	5676	broad.mit.edu	37	19	43430749	43430749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:43430749C>T	uc002ovl.3	-	5	931	c.829G>A	c.(829-831)GGT>AGT	p.G277S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Missense_Mutation_p.G155S	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	277	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				AGGCTCTGACCATTTAGCCAC	0.468													91	298					0	0	1	0	0
PHLDB3	653583	broad.mit.edu	37	19	43979579	43979579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:43979579C>T	uc002own.3	-	16	2165	c.1906G>A	c.(1906-1908)GAA>AAA	p.E636K	PHLDB3_uc010eit.2_Missense_Mutation_p.E306K	NM_198850	NP_942147	Q6NSJ2	PHLB3_HUMAN	pleckstrin homology-like domain, family B,	636											0		Prostate(69;0.0153)				GCGTGGTTTTCGTCAGCGGCG	0.552													24	38					0	0	1	0	0
ETHE1	23474	broad.mit.edu	37	19	44011004	44011004	+	Nonstop_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:44011004A>G	uc002owp.2	-	7	830	c.763T>C	c.(763-765)TGA>CGA	p.*255R	PHLDB3_uc002own.3_5'Flank|PHLDB3_uc002owo.2_5'Flank	NM_014297	NP_055112	O95571	ETHE1_HUMAN	ETHE1 protein precursor	255						mitochondrial matrix|nucleus	hydrolase activity|metal ion binding				0		Prostate(69;0.0153)				AAGTGAGATCAGGCAGTGGGT	0.522													25	71					0	0	1	0	0
ZNF222	7673	broad.mit.edu	37	19	44536184	44536184	+	Silent	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:44536184T>G	uc002oyc.2	+	4	540	c.357T>G	c.(355-357)GGT>GGG	p.G119G	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Silent_p.G159G|ZNF222_uc002oyd.2_Silent_p.G65G	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	119					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				CTTTCCAGGGTGAAAATTGTA	0.388													32	53					0	0	1	0	0
ZNF227	7770	broad.mit.edu	37	19	44739578	44739578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:44739578G>A	uc002oyu.2	+	6	1200	c.995G>A	c.(994-996)GGA>GAA	p.G332E	ZNF227_uc010xwu.1_Missense_Mutation_p.G281E|ZNF227_uc002oyv.2_Missense_Mutation_p.G332E|ZNF227_uc010xwv.1_Missense_Mutation_p.G281E|ZNF227_uc010xww.1_Missense_Mutation_p.G253E|ZNF227_uc002oyw.2_Missense_Mutation_p.G304E|ZNF227_uc010ejh.2_Missense_Mutation_p.G325E|ZNF235_uc002oyx.1_Intron	NM_182490	NP_872296	Q86WZ6	ZN227_HUMAN	zinc finger protein 227	332	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(69;0.0435)				TGCGGCAAGGGATTCAGTAGC	0.393													30	50					0	0	1	0	0
ZNF233	353355	broad.mit.edu	37	19	44777580	44777580	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:44777580G>A	uc002oyz.1	+	5	894	c.767G>A	c.(766-768)GGA>GAA	p.G256E	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Missense_Mutation_p.G71E	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	256					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				ATCCAATCAGGAGAGCAAACC	0.393													16	60					0	0	1	0	0
CEACAM20	125931	broad.mit.edu	37	19	45024667	45024667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:45024667C>T	uc010ejn.1	-	5	887	c.871G>A	c.(871-873)GGC>AGC	p.G291S	CEACAM20_uc010ejo.1_Missense_Mutation_p.G291S|CEACAM20_uc010ejp.1_Missense_Mutation_p.G291S|CEACAM20_uc010ejq.1_Missense_Mutation_p.G291S	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	291	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				AGGGGCTGGCCACTTAGGAAC	0.572													14	65					0	0	1	0	0
CEACAM19	56971	broad.mit.edu	37	19	45185854	45185854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:45185854C>T	uc002ozo.3	+	7	1288	c.808C>T	c.(808-810)CCA>TCA	p.P270S	CEACAM19_uc002ozp.3_Missense_Mutation_p.P270S	NM_020219	NP_064604	Q7Z692	CEA19_HUMAN	carcinoembryonic antigen-related cell adhesion	270	Cytoplasmic (Potential).					integral to membrane					0	Lung NSC(12;0.00308)|all_lung(12;0.00806)	Prostate(69;0.0376)				GCCCACACCCCCACACCTGCA	0.587													5	5					0	0	1	0	0
APOC2	344	broad.mit.edu	37	19	45452002	45452002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:45452002C>T	uc002pah.2	+	3	203	c.100C>T	c.(100-102)CCG>TCG	p.P34S		NM_000483	NP_000474	P02655	APOC2_HUMAN	apolipoprotein C-II precursor	34					cholesterol efflux|chylomicron remnant clearance|high-density lipoprotein particle clearance|lipid catabolic process|lipoprotein metabolic process|negative regulation of cholesterol transport|negative regulation of lipid metabolic process|negative regulation of receptor-mediated endocytosis|negative regulation of very-low-density lipoprotein particle clearance|phospholipid efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of phospholipase activity|positive regulation of phospholipid catabolic process|positive regulation of triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	chylomicron|intermediate-density lipoprotein particle|low-density lipoprotein particle|spherical high-density lipoprotein particle|very-low-density lipoprotein particle	lipase inhibitor activity|lipid binding|lipoprotein lipase activator activity|phospholipase activator activity|phospholipase binding|protein homodimerization activity			kidney(1)	1	Lung NSC(12;0.00858)|all_lung(12;0.0197)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|Epithelial(262;0.174)		GATGCCTAGCCCGACCTTCCT	0.607													31	97					0	0	1	0	0
ERCC2	2068	broad.mit.edu	37	19	45855602	45855602	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:45855602G>A	uc002pbj.2	-	22	2102	c.2055C>T	c.(2053-2055)GCC>GCT	p.A685A	ERCC2_uc002pbh.2_Silent_p.A248A|ERCC2_uc002pbi.2_Silent_p.A378A|ERCC2_uc010ejz.2_Silent_p.A607A|ERCC2_uc002pbk.2_Silent_p.A661A	NM_000400	NP_000391	P18074	ERCC2_HUMAN	excision repair cross-complementing rodent	685	Nuclear localization signal (Potential).				cell cycle checkpoint|chromosome segregation|hair cell differentiation|induction of apoptosis|interspecies interaction between organisms|mRNA capping|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|response to oxidative stress|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|UV protection|viral reproduction	cytoplasm|holo TFIIH complex|MMXD complex	5'-3' DNA helicase activity|ATP binding|ATP-dependent DNA helicase activity|DNA binding|iron-sulfur cluster binding|metal ion binding|protein C-terminus binding|protein N-terminus binding			lung(2)|pancreas(1)	3		Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0226)		TGTCCCCACGGGCAAACCGCT	0.647			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				22	60					0	0	1	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45895485	45895485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:45895485G>A	uc002pbn.2	-	8	1545	c.1468C>T	c.(1468-1470)CCC>TCC	p.P490S	PPP1R13L_uc002pbm.2_Missense_Mutation_p.P69S|PPP1R13L_uc002pbo.2_Missense_Mutation_p.P490S	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	490	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		AGCCTCGTGGGGCTGAGAGGC	0.672													12	22					0	0	1	0	0
ERCC1	2067	broad.mit.edu	37	19	45920149	45920149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:45920149G>A	uc002pbs.1	-	6	678	c.532C>T	c.(532-534)CCC>TCC	p.P178S	ERCC1_uc002pbt.1_Missense_Mutation_p.P178S|ERCC1_uc002pbu.1_Missense_Mutation_p.P106S|ERCC1_uc002pbv.2_Missense_Mutation_p.P178S	NM_001983	NP_001974	P07992	ERCC1_HUMAN	excision repair cross-complementing 1 isofrom 2	178					mitotic recombination|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|response to oxidative stress|transcription-coupled nucleotide-excision repair	cytoplasm|nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair complex	damaged DNA binding|endonuclease activity|protein C-terminus binding|protein domain specific binding|single-stranded DNA binding			ovary(2)	2		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0247)		GCCTGCTGGGGATCTTTCTGG	0.388								NER					16	23					0	0	1	0	0
QPCTL	54814	broad.mit.edu	37	19	46202122	46202122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:46202122C>T	uc010xxr.1	+	5	1071	c.850C>T	c.(850-852)CGC>TGC	p.R284C	QPCTL_uc010ekn.2_Missense_Mutation_p.R190C	NM_017659	NP_060129	Q9NXS2	QPCTL_HUMAN	glutaminyl-peptide cyclotransferase-like isoform	284					peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase|proteolysis	Golgi membrane|integral to membrane	acyltransferase activity|glutaminyl-peptide cyclotransferase activity|peptidase activity|protein binding|zinc ion binding			skin(1)	1		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0059)|GBM - Glioblastoma multiforme(486;0.0882)|Epithelial(262;0.208)		CCACTTCCCTCGCACGGTCCG	0.622													26	119					0	0	1	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387947	46387947	+	Silent	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:46387947G>T	uc002pds.1	-	1	1430	c.1086C>A	c.(1084-1086)CTC>CTA	p.L362L		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	362					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		GTGGGCCACAGAGAGCCGCAG	0.751													10	14					1.61879e-10	1.63208e-10	1	1	0
CCDC61	729440	broad.mit.edu	37	19	46498687	46498687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:46498687G>A	uc002pdw.2	+	2	85	c.85G>A	c.(85-87)GAG>AAG	p.E29K		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		AATCAGAAGCGAGAACGCCGG	0.607													5	11					0	0	1	0	0
NPAS1	4861	broad.mit.edu	37	19	47535945	47535945	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:47535945C>T	uc002pfw.2	+	5	673	c.477C>T	c.(475-477)TTC>TTT	p.F159F	NPAS1_uc002pfx.2_5'UTR|NPAS1_uc002pfy.2_Silent_p.F159F|NPAS1_uc010xyj.1_5'Flank	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	159	PAS 1.				central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		AAGGAAAATTCCTCTACATCT	0.577											OREG0025585	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	50	50					0	0	1	0	0
C5AR1	728	broad.mit.edu	37	19	47823884	47823884	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:47823884C>T	uc002pgj.1	+	2	899	c.850C>T	c.(850-852)CTG>TTG	p.L284L		NM_001736	NP_001727	P21730	C5AR_HUMAN	complement component 5 receptor 1	284	Helical; Name=7; (Potential).				activation of MAPK activity|activation of phospholipase C activity|cellular defense response|elevation of cytosolic calcium ion concentration|immune response|sensory perception of chemical stimulus	integral to plasma membrane	C5a anaphylatoxin receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_cancers(25;2e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000267)|OV - Ovarian serous cystadenocarcinoma(262;0.000618)|Epithelial(262;0.0142)|GBM - Glioblastoma multiforme(486;0.0242)		GCTGGACTCCCTGTGTGTCTC	0.567													58	79					0	0	1	0	0
CRX	1406	broad.mit.edu	37	19	48339556	48339556	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:48339556G>A	uc002phq.3	+	3	361	c.157G>A	c.(157-159)GAG>AAG	p.E53K	CRX_uc010elm.1_RNA	NM_000554	NP_000545	O43186	CRX_HUMAN	cone-rod homeobox protein	53	Homeobox.				organ morphogenesis|response to stimulus|visual perception		leucine zipper domain binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2		all_cancers(25;2.76e-09)|all_epithelial(76;7.01e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000266)|all cancers(93;0.000788)|Epithelial(262;0.0226)|GBM - Glioblastoma multiforme(486;0.0521)		CCAACTGGAGGAGCTGGAGGC	0.632													12	65					0	0	1	0	0
GRIN2D	2906	broad.mit.edu	37	19	48925085	48925085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:48925085C>T	uc002pjc.3	+	10	2223	c.2135C>T	c.(2134-2136)ACC>ATC	p.T712I	GRIN2D_uc010elx.2_5'UTR	NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	712	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	AAGTTTGGGACCGTGCCCAAC	0.602													30	80					0	0	1	0	0
GRWD1	83743	broad.mit.edu	37	19	48956168	48956168	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:48956168C>A	uc002pjd.2	+	7	1460	c.1227C>A	c.(1225-1227)TTC>TTA	p.F409L	KCNJ14_uc002pje.1_5'Flank	NM_031485	NP_113673	Q9BQ67	GRWD1_HUMAN	glutamate-rich WD repeat containing 1	409						nucleolus				ovary(1)	1		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000206)|all cancers(93;0.000207)|Epithelial(262;0.0125)|GBM - Glioblastoma multiforme(486;0.0222)		AGCTGCTGTTCGTGCACCAGG	0.687													35	46					2.2871e-25	2.3338e-25	1	1	0
KCNJ14	3770	broad.mit.edu	37	19	48967992	48967992	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:48967992C>T	uc002pje.1	+	3	1674	c.1269C>T	c.(1267-1269)CCC>CCT	p.P423P	KCNJ14_uc002pjf.1_Silent_p.P423P	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	423	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		CTGCTAGCCCCCGAGTTCTCA	0.567													34	82					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49001493	49001494	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:49001493_49001494CC>TT	uc002pjk.2	-	12	2919_2920	c.2919_2920GG>AA	c.(2917-2922)GCGGAG>GCAAAG	p.E974K		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		GCCCCATTCTCCGCCGCCTTCT	0.634													18	63					0	0	1	0	0
LMTK3	114783	broad.mit.edu	37	19	49013314	49013314	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:49013314G>A	uc002pjk.2	-	4	414	c.414C>T	c.(412-414)TCC>TCT	p.S138S		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		GCATTGGCAGGGAGACCTCAG	0.622													7	40					0	0	1	0	0
PLEKHA4	57664	broad.mit.edu	37	19	49363626	49363626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:49363626G>A	uc002pkx.2	-	6	1008	c.457C>T	c.(457-459)CGT>TGT	p.R153C	PLEKHA4_uc002pkw.1_5'Flank|PLEKHA4_uc010eml.2_Missense_Mutation_p.R153C	NM_020904	NP_065955	Q9H4M7	PKHA4_HUMAN	pleckstrin homology domain containing family A	153	PH.					cytoplasm|membrane	1-phosphatidylinositol binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;0.000108)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.00027)|all cancers(93;0.00084)|GBM - Glioblastoma multiforme(486;0.0244)|Epithelial(262;0.0364)		CCCTCCGCACGGGAGGCCCGG	0.657													22	79					0	0	1	0	0
DHDH	27294	broad.mit.edu	37	19	49448111	49448111	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:49448111C>T	uc002ple.1	+	7	966	c.926C>T	c.(925-927)TCG>TTG	p.S309L		NM_014475	NP_055290	Q9UQ10	DHDH_HUMAN	dimeric dihydrodiol dehydrogenase	309					carbohydrate metabolic process		binding|D-xylose 1-dehydrogenase (NADP+) activity|electron carrier activity|NAD(P)+ transhydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000158)|all cancers(93;0.000258)|Epithelial(262;0.0173)|GBM - Glioblastoma multiforme(486;0.0179)		ATTCCCCTGTCGGAAAGTGAG	0.522													55	85					0	0	1	0	0
TRPM4	54795	broad.mit.edu	37	19	49691975	49691975	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:49691975G>A	uc002pmw.2	+	13	1893	c.1821G>A	c.(1819-1821)GAG>GAA	p.E607E	TRPM4_uc010emu.2_Silent_p.E607E|TRPM4_uc010yak.1_Silent_p.E71E|TRPM4_uc002pmx.2_Silent_p.E433E|TRPM4_uc010emv.2_Silent_p.E492E|TRPM4_uc010yal.1_Silent_p.E253E|TRPM4_uc002pmy.2_5'UTR	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	607	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CTGACGCTGAGGAGGCAGCAC	0.647													18	47					0	0	1	0	0
CCDC155	147872	broad.mit.edu	37	19	49912525	49912525	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:49912525C>T	uc002pnm.1	+	14	1305	c.1131C>T	c.(1129-1131)ATC>ATT	p.I377I	CCDC155_uc010emx.1_Silent_p.I350I	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	377						integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						GCTTGGAGATCGAGGCCATTC	0.597													13	16					0	0	1	0	0
FLT3LG	2323	broad.mit.edu	37	19	49983634	49983634	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:49983634C>T	uc010yau.1	+	7	651	c.561C>T	c.(559-561)CTC>CTT	p.L187L	FLT3LG_uc002pnv.2_Silent_p.L105L|FLT3LG_uc002pnw.2_Silent_p.L105L|FLT3LG_uc002pnu.2_Silent_p.L187L|FLT3LG_uc002pnx.2_Silent_p.L187L|FLT3LG_uc010yav.1_Silent_p.L105L	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	187	Helical; (Potential).				positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CCCCTCTGCTCCTCCTACTGC	0.701													7	24					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50243069	50243069	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:50243069G>A	uc002ppm.2	-	11	1754	c.1743C>T	c.(1741-1743)ACC>ACT	p.T581T		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	581							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GTTTTGGGGGGGTTCCTGCAC	0.542													23	88					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50248481	50248481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:50248481G>A	uc002ppm.2	-	7	1176	c.1165C>T	c.(1165-1167)CGG>TGG	p.R389W		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	389							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		TCATCCGCCCGACCTCGCAGC	0.682													42	39					0	0	1	0	0
MED25	81857	broad.mit.edu	37	19	50334627	50334628	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:50334627_50334628CC>TT	uc002ppw.1	+	10	1192_1193	c.1139_1140CC>TT	c.(1138-1140)TCC>TTT	p.S380F	MED25_uc010ybe.1_Missense_Mutation_p.S167F|MED25_uc002ppx.1_Missense_Mutation_p.S161F	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	380	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		AGCGGCCCTTCCCCAGCCCAGC	0.698													5	5					0	0	1	0	0
ATF5	22809	broad.mit.edu	37	19	50436307	50436307	+	Silent	SNP	C	T	T	rs141235467		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:50436307C>T	uc010enq.1	+	4	1374	c.807C>T	c.(805-807)ATC>ATT	p.I269I	ATF5_uc002prd.2_Silent_p.I269I	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	269					regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity	p.I269I(1)		skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		ACCTGCTCATCGAGGTTTACA	0.642													25	14					0	0	1	0	0
MYBPC2	4606	broad.mit.edu	37	19	50951635	50951635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:50951635C>T	uc002psf.2	+	13	1511	c.1460C>T	c.(1459-1461)TCC>TTC	p.S487F		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	487	Ig-like C2-type 4.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		ATCACCATTTCCCATGTAGGC	0.433													58	178					0	0	1	0	0
LRRC4B	94030	broad.mit.edu	37	19	51021509	51021509	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51021509G>A	uc002pss.2	-	3	1598	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	487	Gly-rich.|Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		TCACCGTGGTGAAGTAGGTGT	0.443													5	12					0	0	1	0	0
SHANK1	50944	broad.mit.edu	37	19	51165791	51165791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51165791C>T	uc002psx.1	-	23	5936	c.5917G>A	c.(5917-5919)GCC>ACC	p.A1973T	SHANK1_uc002psw.1_Missense_Mutation_p.A1357T	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	1973	Poly-Ser.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GAGGAGGAGGCTGAGGGTGAG	0.721													3	10					0	0	1	0	0
KLK15	55554	broad.mit.edu	37	19	51329058	51329058	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51329058C>T	uc002ptl.2	-	5	796	c.765G>A	c.(763-765)AGG>AGA	p.R255R	KLK1_uc002ptk.1_5'Flank|KLK1_uc010ycg.1_5'Flank|KLK15_uc002ptm.2_Silent_p.R170R|KLK15_uc002ptn.2_3'UTR|KLK15_uc002pto.2_Silent_p.R254R|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_3'UTR|KLK15_uc010eod.2_RNA	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	255					proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		ATAGTCAGTTCCTCTTCATGG	0.562													29	45					0	0	1	0	0
KLK15	55554	broad.mit.edu	37	19	51329958	51329958	+	Silent	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51329958A>T	uc002ptl.2	-	4	568	c.537T>A	c.(535-537)TCT>TCA	p.S179S	KLK1_uc002ptk.1_5'Flank|KLK1_uc010ycg.1_5'Flank|KLK15_uc002ptm.2_Intron|KLK15_uc002ptn.2_Intron|KLK15_uc002pto.2_Silent_p.S178S|KLK15_uc010ych.1_RNA|KLK15_uc010yci.1_Intron|KLK15_uc010eod.2_Intron	NM_017509	NP_059979	Q9H2R5	KLK15_HUMAN	kallikrein-related peptidase 15 isoform 4	179	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			lung(1)|breast(1)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.0143)		TCTTGTCACAAGATGTGTCCG	0.567													28	96					0	0	1	0	0
KLK8	11202	broad.mit.edu	37	19	51499431	51499431	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51499431G>A	uc002pur.1	-	6	846	c.667C>T	c.(667-669)CAG>TAG	p.Q223*	KLK8_uc002puq.1_Nonsense_Mutation_p.Q268*|KLK8_uc002pus.1_Nonsense_Mutation_p.Q82*|KLK8_uc002put.1_3'UTR|KLK8_uc002puu.1_Nonsense_Mutation_p.Q223*|KLK9_uc002puv.1_RNA	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	223	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		GTGATGCCCTGGAGTGCACCA	0.562													18	89					0	0	1	0	0
KLK8	11202	broad.mit.edu	37	19	51503315	51503315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51503315G>A	uc002pur.1	-	4	609	c.430C>T	c.(430-432)CAT>TAT	p.H144Y	KLK8_uc002puq.1_Missense_Mutation_p.H189Y|KLK8_uc002pus.1_Intron|KLK8_uc002put.1_Intron|KLK8_uc002puu.1_Missense_Mutation_p.H144Y|KLK9_uc002puv.1_Intron	NM_007196	NP_009127	O60259	KLK8_HUMAN	kallikrein 8 isoform 1 preproprotein	144	Peptidase S1.				cell death|keratinocyte proliferation|memory|negative regulation of axon regeneration|negative regulation of myelination|neuron projection morphogenesis|proteolysis|regulation of synapse organization|response to wounding	cytoplasm|extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.0033)|GBM - Glioblastoma multiforme(134;0.00888)		TGGGTGCAATGATCTGCCAGG	0.592													17	27					0	0	1	0	0
KLK11	11012	broad.mit.edu	37	19	51527505	51527506	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51527505_51527506GG>AA	uc002pvd.1	-	4	466_467	c.354_355CC>TT	c.(352-357)ACCCGG>ACTTGG	p.R119W	KLK11_uc002pvb.1_Missense_Mutation_p.R112W|KLK11_uc002pve.1_5'UTR|KLK11_uc002pvf.1_Missense_Mutation_p.R87W|KLK11_uc002pvc.3_Missense_Mutation_p.R87W|KLK11_uc010eom.2_3'UTR	NM_144947	NP_659196	Q9UBX7	KLK11_HUMAN	kallikrein 11 isoform 2 precursor	119	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|GBM - Glioblastoma multiforme(134;0.00878)		GTGGCTGTCCGGGTCTGCTCAC	0.589													28	105					0	0	1	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51629089	51629089	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51629089G>A	uc002pvu.2	+	2	724	c.657G>A	c.(655-657)GGG>GGA	p.G219G	SIGLEC9_uc010yct.1_Silent_p.G219G	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	219	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		CCTTCCCTGGGGCCAGCGTGA	0.667													40	119					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647786	51647786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51647786G>A	uc002pvv.1	+	2	626	c.557G>A	c.(556-558)GGG>GAG	p.G186E	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	186	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		TCCTGGATGGGGACCTCTGTG	0.652													68	139					0	0	1	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51656403	51656403	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51656403C>T	uc002pvv.1	+	7	1374	c.1305C>T	c.(1303-1305)ATC>ATT	p.I435I	SIGLEC7_uc002pvw.1_Silent_p.I342I|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_3'UTR	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	435	Cytoplasmic (Potential).|ITIM motif.				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		AAAGAGAGATCCAGTATGCAC	0.537													69	77					0	0	1	0	0
CD33	945	broad.mit.edu	37	19	51729253	51729253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51729253G>A	uc002pwa.2	+	3	653	c.613G>A	c.(613-615)GAC>AAC	p.D205N	CD33_uc010eos.1_Missense_Mutation_p.D205N|CD33_uc010eot.1_Missense_Mutation_p.D78N|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	205	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	ACGGCCCCAGGACCACGGCAC	0.617													26	39					0	0	1	0	0
NKG7	4818	broad.mit.edu	37	19	51875730	51875730	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51875730C>T	uc002pwj.2	-	1	231	c.60G>A	c.(58-60)CTG>CTA	p.L20L	NKG7_uc002pwk.2_Silent_p.L20L	NM_005601	NP_005592	Q16617	NKG7_HUMAN	natural killer cell group 7 sequence	20	Helical; (Potential).					integral to plasma membrane				central_nervous_system(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000211)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TCAAAGCAATCAGGCAGAACA	0.542													26	62					0	0	1	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918103	51918103	+	Silent	SNP	C	T	T	rs145601049	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51918103C>T	uc002pwo.2	-	8	2206	c.1590G>A	c.(1588-1590)CAG>CAA	p.Q530Q	SIGLEC10_uc002pwp.2_Silent_p.Q472Q|SIGLEC10_uc002pwq.2_Intron|SIGLEC10_uc002pwr.2_Intron|SIGLEC10_uc010ycy.1_Intron|SIGLEC10_uc010ycz.1_Intron|SIGLEC10_uc010eow.2_Intron|SIGLEC10_uc002pws.1_Intron	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	530	Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		TGGATCCACTCTGGGCCCCAT	0.657													60	64					0	0	1	0	0
CEACAM18	729767	broad.mit.edu	37	19	51986417	51986417	+	Silent	SNP	C	T	T	rs61746192		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:51986417C>T	uc002pwv.1	+	5	1003	c.1003C>T	c.(1003-1005)CTG>TTG	p.L335L		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	335	Ig-like C2-type.					integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGGCTCCCTCCTGAACTTCTC	0.527													69	103					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52001429	52001429	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:52001429C>T	uc002pwx.1	-	5	1304	c.1248G>A	c.(1246-1248)GGG>GGA	p.G416G	SIGLEC12_uc002pww.1_Silent_p.G298G|SIGLEC12_uc010eoy.1_Silent_p.G143G	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	416	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GGGTCAGGCTCCCCCAGGTCC	0.622													31	60					0	0	1	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52003322	52003322	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:52003322G>A	uc002pwx.1	-	2	716	c.660C>T	c.(658-660)TTC>TTT	p.F220F	SIGLEC12_uc002pww.1_Silent_p.F102F|SIGLEC12_uc010eoy.1_Intron	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	220	Ig-like V-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CAAGGAGGAGGAATCGACCGT	0.537													56	91					0	0	1	0	0
FPR3	2359	broad.mit.edu	37	19	52327666	52327666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:52327666G>A	uc002pxt.1	+	2	849	c.665G>A	c.(664-666)GGG>GAG	p.G222E		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	222	Helical; Name=5; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						GTCTGCTATGGGATCATCGCT	0.473													9	20					0	0	1	0	0
ZNF480	147657	broad.mit.edu	37	19	52825009	52825009	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:52825009A>C	uc010ydl.1	+	5	576	c.506A>C	c.(505-507)GAA>GCA	p.E169A	ZNF480_uc002pyv.2_Missense_Mutation_p.E92A|ZNF480_uc010ydm.1_Missense_Mutation_p.E126A|ZNF480_uc010epn.2_5'UTR|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	169					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		TGTCTTCAAGAAATGTCTTCC	0.363													26	31					0	0	1	0	0
ZNF765	91661	broad.mit.edu	37	19	53911944	53911944	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:53911944G>A	uc010ydx.1	+	6	1463	c.1136G>A	c.(1135-1137)GGA>GAA	p.G379E	ZNF765_uc002qbm.2_Missense_Mutation_p.G379E|ZNF765_uc002qbn.2_Intron	NM_001040185	NP_001035275	Q7L2R6	ZN765_HUMAN	zinc finger protein 765	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00379)		GTTCATACTGGAGAGAAACCT	0.403													56	89					0	0	1	0	0
ZNF761	388561	broad.mit.edu	37	19	53959559	53959559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:53959559C>T	uc010eqp.2	+	7	2256	c.1798C>T	c.(1798-1800)CAT>TAT	p.H600Y	ZNF761_uc010ydy.1_Missense_Mutation_p.H546Y|ZNF761_uc002qbt.1_Missense_Mutation_p.H546Y	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	600	C2H2-type 14; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		TCAGAAAATTCATACTGAAGA	0.413													22	99					0	0	1	0	0
ZNF331	55422	broad.mit.edu	37	19	54080487	54080487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54080487C>T	uc002qbx.1	+	7	2107	c.673C>T	c.(673-675)CGG>TGG	p.R225W	ZNF331_uc002qby.1_Missense_Mutation_p.R225W|ZNF331_uc002qbz.1_Missense_Mutation_p.R225W|ZNF331_uc002qca.1_Missense_Mutation_p.R225W|ZNF331_uc010eqr.1_Missense_Mutation_p.R225W|ZNF331_uc002qcb.1_Missense_Mutation_p.R225W|ZNF331_uc002qcc.1_Missense_Mutation_p.R225W|ZNF331_uc002qcd.1_Missense_Mutation_p.R225W	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	225	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		AAAGGCCTTTCGGCGTGGTGA	0.473			T	?	follicular thyroid adenoma								19	45					0	0	1	0	0
MIR520B	574473	broad.mit.edu	37	19	54204520	54204520	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54204520G>A	hsa-mir-520b|MI0003155	+			c.40G>A			MIR518B_hsa-mir-518b|MI0003156_5'Flank																	0						TGAAAGAAAAGAAAGTGCTTC	0.428													14	31					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54299120	54299120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54299120C>T	uc002qch.3	-	9	3311	c.3091G>A	c.(3091-3093)GTC>ATC	p.V1031I	NLRP12_uc010eqw.2_Missense_Mutation_p.V257I|NLRP12_uc002qci.3_Missense_Mutation_p.V974I|NLRP12_uc002qcj.3_Missense_Mutation_p.V1032I|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	1031	LRR 8.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CACCAGAGGACTCGGAGTTTG	0.552													11	24					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54313484	54313484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54313484C>T	uc002qch.3	-	3	1649	c.1429G>A	c.(1429-1431)GAG>AAG	p.E477K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E477K|NLRP12_uc002qcj.3_Missense_Mutation_p.E477K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E477K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	477	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TCCTGCTCCTCAAATAGGATT	0.587													23	83					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54314235	54314235	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54314235C>A	uc002qch.3	-	3	898	c.678G>T	c.(676-678)CTG>CTT	p.L226L	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.L226L|NLRP12_uc002qcj.3_Silent_p.L226L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.L226L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	226	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CCTTGTGTGCCAGCATGGACT	0.577													27	73					4.74835e-14	4.79717e-14	1	1	0
PRKCG	5582	broad.mit.edu	37	19	54395022	54395022	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54395022G>A	uc002qcq.1	+	6	906	c.624G>A	c.(622-624)ACG>ACA	p.T208T	PRKCG_uc010eqz.1_Silent_p.T208T|PRKCG_uc010yef.1_Silent_p.T208T|PRKCG_uc010yeg.1_Silent_p.T208T|PRKCG_uc010yeh.1_Silent_p.T95T	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	208	C2.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding	p.T208T(1)		lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GGAACCTGACGAAACAGAAGA	0.522													21	83					0	0	1	0	0
TMC4	147798	broad.mit.edu	37	19	54673270	54673270	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54673270C>T	uc010erf.2	-	3	572	c.440G>A	c.(439-441)TGG>TAG	p.W147*	TMC4_uc002qdo.2_Nonsense_Mutation_p.W141*	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	147	Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					CTTCAGTGTCCACGCCCAGGG	0.448													38	60					0	0	1	0	0
TMC4	147798	broad.mit.edu	37	19	54675776	54675776	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54675776A>G	uc010erf.2	-	2	306	c.174T>C	c.(172-174)CCT>CCC	p.P58P	TMC4_uc002qdo.2_Silent_p.P52P	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	58	Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GCGCCCCCCAAGGCAGCACCC	0.657													15	56					0	0	1	0	0
MBOAT7	79143	broad.mit.edu	37	19	54678032	54678033	+	Missense_Mutation	DNP	GG	AA	AA	rs148671781	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54678032_54678033GG>AA	uc002qdq.2	-	9	1390_1391	c.1124_1125CC>TT	c.(1123-1125)GCC>GTT	p.A375V	TMC4_uc010erf.2_5'Flank|TMC4_uc002qdo.2_5'Flank|MBOAT7_uc010erg.2_Missense_Mutation_p.A59V|MBOAT7_uc010yem.1_Missense_Mutation_p.A357V|MBOAT7_uc002qdr.2_Missense_Mutation_p.A375V|MBOAT7_uc002qds.2_Missense_Mutation_p.A302V|MBOAT7_uc010yen.1_Missense_Mutation_p.A302V	NM_024298	NP_077274	Q96N66	MBOA7_HUMAN	membrane bound O-acyltransferase domain	375	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	acyltransferase activity				0	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GCCGGCCCTCGGCAGCCAGGCA	0.688													42	61					0	0	1	0	0
LILRA6	79168	broad.mit.edu	37	19	54744200	54744200	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54744200T>C	uc002qeu.1	-	6	1332	c.1208A>G	c.(1207-1209)AAC>AGC	p.N403S	LILRB3_uc002qeh.1_Intron|LILRB3_uc002qeg.1_Intron|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Missense_Mutation_p.N403S|LILRB3_uc010erh.1_Intron|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Missense_Mutation_p.N403S|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Intron|LILRB3_uc002qep.1_Intron|LILRB3_uc002qeq.1_Intron|LILRB3_uc002qer.1_Intron|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Missense_Mutation_p.N403S|LILRA6_uc010yeq.1_Missense_Mutation_p.N403S|LILRA6_uc002qet.3_RNA|LILRA6_uc002qev.1_Missense_Mutation_p.N264S	NM_024318	NP_077294	Q6PI73	LIRA6_HUMAN	leukocyte immunoglobulin-like receptor,	403	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane	receptor activity			skin(2)	2	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CAGGTGGGGGTTGGAGCTGTA	0.597													23	332					0	0	1	0	0
LILRA4	23547	broad.mit.edu	37	19	54848304	54848304	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54848304G>A	uc002qfj.2	-	6	1120	c.1063C>T	c.(1063-1065)CTG>TTG	p.L355L	LILRA4_uc002qfi.2_Silent_p.L289L	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	355	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		TCCTTGGTCAGAAGGAAAGTG	0.587													56	99					0	0	1	0	0
TTYH1	57348	broad.mit.edu	37	19	54947051	54947051	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54947051C>T	uc002qfq.2	+	12	1404	c.1312C>T	c.(1312-1314)CAG>TAG	p.Q438*	TTYH1_uc010yey.1_3'UTR|TTYH1_uc002qfr.2_Intron|TTYH1_uc002qft.2_Nonsense_Mutation_p.Q438*	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1	438	Cytoplasmic (Potential).				cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		TTTCAACCCTCAGGTACTGGA	0.333													58	54					0	0	1	0	0
LENG8	114823	broad.mit.edu	37	19	54963334	54963334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54963334G>A	uc002qfv.1	+	3	247	c.103G>A	c.(103-105)GAG>AAG	p.E35K	LENG8_uc002qfw.2_Missense_Mutation_p.E35K			Q96PV6	LENG8_HUMAN	RecName: Full=Leukocyte receptor cluster member 8;	35							protein binding			central_nervous_system(1)|pancreas(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.139)		GCCGATGCACGAGAACCCGGA	0.622													58	70					0	0	1	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55045032	55045032	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55045032C>T	uc010yfa.1	+	3		c.258C>T			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		TCCTGTCATTCCCATCTTCGG	0.542													21	41					0	0	1	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55239286	55239286	+	Missense_Mutation	SNP	C	T	T	rs113773573		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55239286C>T	uc002qgu.1	+	4	583	c.565C>T	c.(565-567)CTT>TTT	p.L189F	KIR2DL3_uc002qgv.2_Intron	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	189	Ig-like C2-type 2.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		GACACCTGCCCTTGCAGGGAC	0.567													34	40					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55447703	55447703	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55447703G>A	uc002qih.3	-	6	2302	c.2226C>T	c.(2224-2226)ATC>ATT	p.I742I	NLRP7_uc002qig.3_Silent_p.I714I|NLRP7_uc002qii.3_Silent_p.I742I|NLRP7_uc010esk.2_Silent_p.I742I|NLRP7_uc010esl.2_Silent_p.I770I	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	742							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GTTCCCACTCGATGTGCCCTG	0.552													11	56					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55449476	55449476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55449476C>T	uc002qih.3	-	5	2141	c.2065G>A	c.(2065-2067)GAC>AAC	p.D689N	NLRP7_uc002qig.3_Missense_Mutation_p.D661N|NLRP7_uc002qii.3_Missense_Mutation_p.D689N|NLRP7_uc010esk.2_Missense_Mutation_p.D689N|NLRP7_uc010esl.2_Missense_Mutation_p.D717N	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	689	LRR 2.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		ACAGAAGAGTCACTCAGGAAG	0.483													56	186					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55450892	55450892	+	Missense_Mutation	SNP	C	T	T	rs148981739	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55450892C>T	uc002qih.3	-	4	1371	c.1295G>A	c.(1294-1296)CGA>CAA	p.R432Q	NLRP7_uc002qig.3_Missense_Mutation_p.R432Q|NLRP7_uc002qii.3_Missense_Mutation_p.R432Q|NLRP7_uc010esk.2_Missense_Mutation_p.R432Q|NLRP7_uc010esl.2_Missense_Mutation_p.R460Q	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	432	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CAGGTCCTCTCGGTGGAACAC	0.687													25	32					0	0	1	0	0
NLRP2	55655	broad.mit.edu	37	19	55501871	55501871	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55501871T>C	uc002qij.2	+	10	2625	c.2539T>C	c.(2539-2541)TTG>CTG	p.L847L	NLRP2_uc010yfp.1_Silent_p.L824L|NLRP2_uc010esn.2_Silent_p.L823L|NLRP2_uc010eso.2_Silent_p.L844L|NLRP2_uc010esp.2_Silent_p.L825L	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	847	LRR 2.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		CTTTTGTAGGTTGGAAAACTG	0.512													25	40					0	0	1	0	0
PTPRH	5794	broad.mit.edu	37	19	55710238	55710238	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55710238T>C	uc002qjq.2	-	8	1536	c.1463A>G	c.(1462-1464)AAC>AGC	p.N488S	PTPRH_uc010esv.2_Missense_Mutation_p.N310S|PTPRH_uc002qjs.2_Missense_Mutation_p.N495S	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	488	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		AATGGTGCTGTTGGTCCAGTC	0.592													17	28					0	0	1	0	0
SUV420H2	84787	broad.mit.edu	37	19	55854202	55854202	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:55854202C>T	uc002qkj.3	+	4	617	c.369C>T	c.(367-369)ATC>ATT	p.I123I	SUV420H2_uc010esx.1_Silent_p.I123I|SUV420H2_uc002qkk.1_Silent_p.I123I|SUV420H2_uc002qkl.2_Silent_p.I8I	NM_032701	NP_116090	Q86Y97	SV422_HUMAN	suppressor of variegation 4-20 homolog 2	123	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding				0	Breast(117;0.191)		BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		GGGCCAAGATCGTGTCCACTC	0.587													23	65					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56228155	56228155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56228155C>T	uc002qly.2	-	5	2297	c.2269G>A	c.(2269-2271)GAA>AAA	p.E757K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	757	LRR 1.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		GTCATTCCTTCGTCCCTCAAG	0.527													45	63					0	0	1	0	0
NLRP9	338321	broad.mit.edu	37	19	56243537	56243537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56243537C>T	uc002qly.2	-	2	1688	c.1660G>A	c.(1660-1662)GAA>AAA	p.E554K		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	554						cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		AATTCTTTTTCCTGAGTTTCA	0.348													16	34					0	0	1	0	0
NLRP11	204801	broad.mit.edu	37	19	56320573	56320573	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56320573T>G	uc010ygf.1	-	5	2114	c.1403A>C	c.(1402-1404)AAC>ACC	p.N468T	NLRP11_uc002qlz.2_Missense_Mutation_p.N369T|NLRP11_uc002qmb.2_Missense_Mutation_p.N369T|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	468	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		GATCAGATAGTTGGGTACTGC	0.398													22	56					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56413429	56413429	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56413429G>A	uc010ygg.1	-	9	2786	c.2761C>T	c.(2761-2763)CGC>TGC	p.R921C		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	921							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCATCTGGGCGACCCAAGGCC	0.547													25	40					0	0	1	0	0
NLRP5	126206	broad.mit.edu	37	19	56539571	56539571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56539571C>T	uc002qmj.2	+	7	1972	c.1972C>T	c.(1972-1974)CCC>TCC	p.P658S	NLRP5_uc002qmi.2_Missense_Mutation_p.P639S	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	658						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTGTCCCGTTCCCCTGGGGGT	0.587													35	34					0	0	1	0	0
ZNF787	126208	broad.mit.edu	37	19	56600191	56600191	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56600191G>C	uc010eth.1	-	3	469	c.350C>G	c.(349-351)ACG>AGG	p.T117R		NM_001002836	NP_001002836	Q6DD87	ZN787_HUMAN	zinc finger protein 787	117					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;3.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0559)		CTTCTCGCCCGTGTGGATGCG	0.682													9	12					0	0	1	0	0
ZNF582	147948	broad.mit.edu	37	19	56895747	56895748	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56895747_56895748CC>TT	uc002qmz.1	-	5	1197_1198	c.1038_1039GG>AA	c.(1036-1041)AAGGCT>AAAACT	p.A347T	ZNF582_uc002qmy.2_Missense_Mutation_p.A378T	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	347	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		TGATTAAAAGCCTTCCCACATT	0.421													48	67					0	0	1	0	0
ZNF667	63934	broad.mit.edu	37	19	56969610	56969610	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:56969610G>A	uc002qnd.2	-	4	329	c.167C>T	c.(166-168)TCC>TTC	p.S56F	ZNF667_uc010etl.2_5'UTR|ZNF667_uc002qne.2_Missense_Mutation_p.S56F|ZNF667_uc010etm.2_5'UTR	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	56	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TCTCCGAAAGGAAAGACCTGT	0.498													6	29					0	0	1	0	0
ZNF835	90485	broad.mit.edu	37	19	57175863	57175863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:57175863G>A	uc010ygo.1	-	2	770	c.770C>T	c.(769-771)TCG>TTG	p.S257L	ZNF835_uc010ygn.1_Missense_Mutation_p.S235L	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						TATCAGGGACGAGCGGTTGCG	0.697													27	25					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57326492	57326492	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:57326492G>A	uc002qnu.2	-	7	3669	c.3318C>T	c.(3316-3318)ATC>ATT	p.I1106I	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.I1077I|PEG3_uc002qnv.2_Silent_p.I1106I|PEG3_uc002qnw.2_Silent_p.I982I|PEG3_uc002qnx.2_Silent_p.I980I|PEG3_uc010etr.2_Silent_p.I1106I	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1106					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CACATTCATAGATTTTGTCAT	0.522													21	49					0	0	1	0	0
PEG3	5178	broad.mit.edu	37	19	57326576	57326576	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:57326576G>A	uc002qnu.2	-	7	3585	c.3234C>T	c.(3232-3234)ACC>ACT	p.T1078T	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.T1049T|PEG3_uc002qnv.2_Silent_p.T1078T|PEG3_uc002qnw.2_Silent_p.T954T|PEG3_uc002qnx.2_Silent_p.T952T|PEG3_uc010etr.2_Silent_p.T1078T	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1078					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCTGACCATGGGTCTCCTCGC	0.488													19	68					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57649966	57649966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:57649966C>T	uc002qnz.1	-	3	402	c.16G>A	c.(16-18)GGA>AGA	p.G6R		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	6					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTCACTCTTCCCTGTAACAAC	0.478													49	70					0	0	1	0	0
ZNF606	80095	broad.mit.edu	37	19	58491078	58491078	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:58491078G>A	uc002qqw.2	-	7	1588	c.970C>T	c.(970-972)CAA>TAA	p.Q324*	ZNF606_uc010yhp.1_Nonsense_Mutation_p.Q234*	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	324	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		TTAAAGATTTGATGGCATTCC	0.313													36	43					0	0	1	0	0
FAM110C	642273	broad.mit.edu	37	2	46054	46054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:46054C>T	uc010yim.1	-	1	332	c.332G>A	c.(331-333)CGA>CAA	p.R111Q		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	111						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		GCCCGATCCTCGCACGAATTC	0.562													30	38					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	905346	905346	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:905346C>T	uc010ewg.2	-	1		c.237G>A			uc010ewh.1_Silent_p.Q200Q					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		TTTCACAAAGCTGGTGTTTCA	0.512													67	72					0	0	1	0	0
SNTG2	54221	broad.mit.edu	37	2	1079255	1079255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:1079255G>A	uc002qwq.2	+	2	252	c.124G>A	c.(124-126)GAC>AAC	p.D42N	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Missense_Mutation_p.D42N	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	42					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		AAATGCCTATGACATCCGGCT	0.483													26	59					0	0	1	0	0
MYT1L	23040	broad.mit.edu	37	2	1926730	1926730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:1926730C>T	uc002qxe.2	-	10	1638	c.811G>A	c.(811-813)GGA>AGA	p.G271R	MYT1L_uc002qxd.2_Missense_Mutation_p.G271R|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	271					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ACACCGTGTCCTTGGGCTAAT	0.413													59	98					0	0	1	0	0
TTC15	51112	broad.mit.edu	37	2	3483043	3483043	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:3483043C>T	uc002qxm.1	+	12	2225	c.2019C>T	c.(2017-2019)TCC>TCT	p.S673S	TTC15_uc002qxn.1_Silent_p.S673S|TTC15_uc010ewm.1_Intron	NM_016030	NP_057114	Q8WVT3	TTC15_HUMAN	tetratricopeptide repeat domain 15	673	TPR 4.						binding			ovary(2)|breast(1)|pancreas(1)	4	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)	all_cancers(51;0.214)		OV - Ovarian serous cystadenocarcinoma(76;0.0402)|Epithelial(75;0.0986)|all cancers(51;0.149)		TCAAGGACTCCCTGCGGCAGC	0.622													40	73					0	0	1	0	0
RPS7	6201	broad.mit.edu	37	2	3628410	3628410	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:3628410G>A	uc002qxw.2	+	7	629	c.523G>A	c.(523-525)GGT>AGT	p.G175S	RPS7_uc002qxy.2_RNA	NM_001011	NP_001002	P62081	RS7_HUMAN	ribosomal protein S7	175					endocrine pancreas development|ribosomal small subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleolus|small-subunit processome	protein binding|RNA binding|structural constituent of ribosome				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0963)|Epithelial(75;0.208)		AACTTTTTCTGGTGTCTATAA	0.323													20	30					0	0	1	0	0
ALLC	55821	broad.mit.edu	37	2	3743350	3743350	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:3743350A>T	uc010ewt.2	+	8	716	c.555A>T	c.(553-555)AAA>AAT	p.K185N	ALLC_uc002qyf.2_Translation_Start_Site	NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	204							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		CTGGACAAAAAGACTGGACTG	0.443										HNSCC(21;0.051)			13	35					0	0	1	0	0
YWHAQ	10971	broad.mit.edu	37	2	9728436	9728436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:9728436C>T	uc002qzw.2	-	3	604	c.440G>A	c.(439-441)GGA>GAA	p.G147E	YWHAQ_uc002qzx.2_Missense_Mutation_p.G147E	NM_006826	NP_006817	P27348	1433T_HUMAN	tyrosine 3/tryptophan 5 -monooxygenase	147					negative regulation of transcription, DNA-dependent	centrosome|nucleus	protein N-terminus binding			breast(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.241)		TTGGTAAGCTCCTTGGGAATT	0.378													14	44					0	0	1	0	0
GRHL1	29841	broad.mit.edu	37	2	10136059	10136059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:10136059C>T	uc002raa.2	+	13	1723	c.1552C>T	c.(1552-1554)CCT>TCT	p.P518S	GRHL1_uc002rab.2_RNA|GRHL1_uc002rad.2_Missense_Mutation_p.P329S|GRHL1_uc010yjb.1_Missense_Mutation_p.P367S	NM_198182	NP_937825	Q9NZI5	GRHL1_HUMAN	grainyhead-like 1	518					cellular lipid metabolic process|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding			pancreas(1)|skin(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.246)		TGCTGTCCCTCCTTCTACCAA	0.458													74	172					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11742532	11742532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:11742532G>A	uc002rbk.1	+	17	2830	c.2530G>A	c.(2530-2532)GGA>AGA	p.G844R	GREB1_uc002rbo.1_Missense_Mutation_p.G478R	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	844						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		TTTGTTTTAGGGAGTGGACTT	0.507													64	125					0	0	1	0	0
GREB1	9687	broad.mit.edu	37	2	11775492	11775492	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:11775492C>T	uc002rbk.1	+	30	5607	c.5307C>T	c.(5305-5307)ATC>ATT	p.I1769I	GREB1_uc002rbp.1_Silent_p.I767I	NM_014668	NP_055483	Q4ZG55	GREB1_HUMAN	growth regulation by estrogen in breast cancer 1	1769						integral to membrane				ovary(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.115)|OV - Ovarian serous cystadenocarcinoma(76;0.186)		AGAAGCAGATCGTGGTGGGCG	0.627													23	65					0	0	1	0	0
LPIN1	23175	broad.mit.edu	37	2	11964770	11964770	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:11964770C>T	uc010yjn.1	+	21	2800	c.2526C>T	c.(2524-2526)CTC>CTT	p.L842L	LPIN1_uc010yjm.1_Silent_p.L927L|LPIN1_uc002rbt.2_Silent_p.L842L|LPIN1_uc010yjo.1_Silent_p.L343L	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	842					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		ATGTGAGACTCTGTGAAGTAG	0.488													20	54					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17697103	17697103	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:17697103C>T	uc002rcl.1	-	1	2604	c.2580G>A	c.(2578-2580)GAG>GAA	p.E860E	RAD51AP2_uc010exn.1_Silent_p.E851E	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	860										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					AACTATCTTTCTCTTCCTTTT	0.279													4	4					0	0	1	0	0
RAD51AP2	729475	broad.mit.edu	37	2	17698508	17698508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:17698508G>A	uc002rcl.1	-	1	1199	c.1175C>T	c.(1174-1176)TCT>TTT	p.S392F	RAD51AP2_uc010exn.1_Missense_Mutation_p.S383F	NM_001099218	NP_001092688	Q09MP3	R51A2_HUMAN	RAD51 associated protein 2	392										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CCAGTTTTGAGATTTTTCCAG	0.328													20	30					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21231268	21231268	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:21231268C>T	uc002red.2	-	26	8600	c.8472G>A	c.(8470-8472)CTG>CTA	p.L2824L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2824					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTGACTCCTTCAGAGCCAGCG	0.423													50	122					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21236086	21236086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:21236086G>A	uc002red.2	-	25	4290	c.4162C>T	c.(4162-4164)CGT>TGT	p.R1388C		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1388					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATGTGGTAACGAGCCCGAAGG	0.527													67	135					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21255324	21255324	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:21255324G>A	uc002red.2	-	10	1382	c.1254C>T	c.(1252-1254)ATC>ATT	p.I418I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	418	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGGGCTCGGGGATCAGGGCCA	0.597													23	64					0	0	1	0	0
EPT1	85465	broad.mit.edu	37	2	26596326	26596326	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:26596326T>C	uc010ykz.1	+	5	549	c.402T>C	c.(400-402)GTT>GTC	p.V134V	EPT1_uc010eyl.1_RNA	NM_033505	NP_277040	Q9C0D9	EPT1_HUMAN	selenoprotein I	134	Helical; (Potential).				phospholipid biosynthetic process	integral to membrane	ethanolaminephosphotransferase activity|metal ion binding				0						GGTCATGTGTTTACTTTGTTG	0.423													11	23					0	0	1	0	0
CAD	790	broad.mit.edu	37	2	27456398	27456399	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:27456398_27456399CC>TT	uc002rji.2	+	20	3372_3373	c.3210_3211CC>TT	c.(3208-3213)GACCTC>GATTTC	p.L1071F	CAD_uc010eyw.2_Missense_Mutation_p.L1008F	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	1071	CPSase B.|ATP-grasp 2.|CPSase (Carbamoyl-phosphate synthase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	AGCTCAGTGACCTCGAGGTGGG	0.579													18	33					0	0	1	0	0
PPM1G	5496	broad.mit.edu	37	2	27605022	27605022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:27605022G>A	uc002rkl.2	-	10	1512	c.1405C>T	c.(1405-1407)CTT>TTT	p.L469F	ZNF513_uc002rkj.2_5'Flank|ZNF513_uc002rkk.2_5'Flank|PPM1G_uc002rkm.2_Missense_Mutation_p.L250F	NM_002707	NP_002698	O15355	PPM1G_HUMAN	protein phosphatase 1G	469					cell cycle arrest|protein dephosphorylation	cytoplasm|nucleus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AATAACCGAAGCTCCCCATTT	0.473													26	81					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28763257	28763257	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:28763257C>T	uc002rmb.1	+	12	723	c.723C>T	c.(721-723)TGC>TGT	p.C241C	PLB1_uc010ezj.1_Silent_p.C252C	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	241	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					CCTGTAATTGCTCAGAGGAGA	0.622													24	30					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28763259	28763259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:28763259C>T	uc002rmb.1	+	12	725	c.725C>T	c.(724-726)TCA>TTA	p.S242L	PLB1_uc010ezj.1_Missense_Mutation_p.S253L	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	242	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TGTAATTGCTCAGAGGAGACC	0.622													24	29					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28812360	28812360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:28812360G>A	uc002rmb.1	+	27	1859	c.1859G>A	c.(1858-1860)AGG>AAG	p.R620K	PLB1_uc010ezj.1_Missense_Mutation_p.R609K|PLB1_uc002rmc.2_Missense_Mutation_p.R308K|PLB1_uc002rmd.1_Missense_Mutation_p.R130K	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	620	4 X 308-326 AA approximate repeats.|2.|Extracellular (Potential).				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TATGACACAAGGGAAGATTTT	0.488													27	81					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28863814	28863814	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:28863814A>G	uc002rmb.1	+	57	4120	c.4120A>G	c.(4120-4122)ACT>GCT	p.T1374A	PLB1_uc010ezj.1_Missense_Mutation_p.T1363A|PLB1_uc002rme.1_Missense_Mutation_p.T339A|PLB1_uc002rmf.1_RNA	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	1374	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|4.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					GGGCCGCAAGACTACCTCCAA	0.577													17	32					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29295495	29295495	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:29295495T>G	uc002rmt.1	-	1	1633	c.1633A>C	c.(1633-1635)AAG>CAG	p.K545Q		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	545					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						ATTGACTCCTTCATCTTCAGA	0.577													36	45					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29451761	29451761	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:29451761C>A	uc002rmy.2	-	16	3711	c.2804G>T	c.(2803-2805)GGA>GTA	p.G935V		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	935	Gly-rich.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	TATATATCCTCCGCCTCCTCC	0.507			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				36	63					3.05275e-18	3.09474e-18	1	1	0
CRIM1	51232	broad.mit.edu	37	2	36737185	36737185	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:36737185C>T	uc002rpd.2	+	9	1600	c.1561C>T	c.(1561-1563)CTT>TTT	p.L521F		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	521	Antistasin-like 2.|Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				CTTCGGTTTCCTTACTGATGC	0.478													25	89					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40366589	40366589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:40366589C>T	uc002rrx.2	-	9	2521	c.2497G>A	c.(2497-2499)GAT>AAT	p.D833N	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.D828N|SLC8A1_uc002rrz.2_Missense_Mutation_p.D820N|SLC8A1_uc002rsa.2_Missense_Mutation_p.D797N|SLC8A1_uc002rsd.3_Missense_Mutation_p.D797N	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	833	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	GTCACAGAATCTTTCAGGCCA	0.483													20	33					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656049	40656049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:40656049C>T	uc002rrx.2	-	1	1396	c.1372G>A	c.(1372-1374)GAA>AAA	p.E458K	SLC8A1_uc002rry.2_Missense_Mutation_p.E458K|SLC8A1_uc002rrz.2_Missense_Mutation_p.E458K|SLC8A1_uc002rsa.2_Missense_Mutation_p.E458K|SLC8A1_uc002rsd.3_Missense_Mutation_p.E458K|SLC8A1_uc002rsb.1_Missense_Mutation_p.E458K|SLC8A1_uc010fan.1_Missense_Mutation_p.E458K|SLC8A1_uc002rsc.1_Missense_Mutation_p.E458K	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	458	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	TCAGTAAATTCATAATCAGAC	0.423													30	44					0	0	1	0	0
OXER1	165140	broad.mit.edu	37	2	42990124	42990124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:42990124C>T	uc002rss.2	-	1	1278	c.1196G>A	c.(1195-1197)AGG>AAG	p.R399K		NM_148962	NP_683765	Q8TDS5	OXER1_HUMAN	G-protein coupled receptor TG1019	399	Cytoplasmic (Potential).				regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding|G-protein coupled receptor activity			breast(1)	1						CTCCGCCTTCCTAGAGGCCTC	0.687													20	67					0	0	1	0	0
THADA	63892	broad.mit.edu	37	2	43768301	43768301	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:43768301C>T	uc002rsw.3	-	21	3613	c.3261G>A	c.(3259-3261)GAG>GAA	p.E1087E	THADA_uc010far.2_Silent_p.E356E|THADA_uc002rsx.3_Silent_p.E1087E|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Silent_p.E796E|THADA_uc010fat.1_Silent_p.E234E|THADA_uc002rta.2_Silent_p.E797E	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1087							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GCCTTACCTGCTCCACCGTCA	0.383													20	23					0	0	1	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739273	46739273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:46739273G>A	uc002ruy.2	-	2	1692	c.578C>T	c.(577-579)TCA>TTA	p.S193L	ATP6V1E2_uc002ruz.2_Missense_Mutation_p.S193L	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	193					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			CAAGGTATTTGAAACCTTTAT	0.448													33	94					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49190771	49190771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:49190771G>A	uc002rww.2	-	10	1263	c.1189C>T	c.(1189-1191)CCC>TCC	p.P397S	FSHR_uc002rwx.2_Missense_Mutation_p.P335S|FSHR_uc010fbn.2_Missense_Mutation_p.P371S	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	397	Cytoplasmic (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	AGGAACCTGGGGACTGTGAGT	0.458									Gonadal_Dysgenesis_46_XX				27	48					0	0	1	0	0
PSME4	23198	broad.mit.edu	37	2	54101548	54101548	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:54101548G>A	uc002rxp.2	-	43	5084	c.5028C>T	c.(5026-5028)TTC>TTT	p.F1676F	PSME4_uc010yop.1_Silent_p.F1562F|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Silent_p.F1051F|PSME4_uc010fbv.1_Silent_p.F820F|PSME4_uc010fbt.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1676					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			CATTGTTTAGGAAAATAAAGA	0.373													33	50					0	0	1	0	0
MIR216A	406998	broad.mit.edu	37	2	56216122	56216122	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:56216122C>T	hsa-mir-216a|MI0000292	-			c.73C>T			uc002rzk.2_Intron|uc010ype.1_RNA																	0						TAGCATAATCCCAGAGACCAC	0.433													36	124					0	0	1	0	0
FANCL	55120	broad.mit.edu	37	2	58390196	58390196	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:58390196C>T	uc002rzw.3	-	10	856	c.789G>A	c.(787-789)CTG>CTA	p.L263L	FANCL_uc002rzx.3_Silent_p.L268L|FANCL_uc010fce.2_Silent_p.L235L|FANCL_uc010fcf.1_Silent_p.L204L	NM_018062	NP_060532	Q9NW38	FANCL_HUMAN	Fanconi anemia, complementation group L isoform	263					DNA repair	cytoplasm|nucleoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GCTTAATTCCCAGGGGTTTTA	0.308								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				25	39					0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688733	60688733	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:60688733G>A	uc002sae.1	-	4	1542	c.1314C>T	c.(1312-1314)TCC>TCT	p.S438S	BCL11A_uc002sab.2_Silent_p.S438S|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.S107S|BCL11A_uc010ypj.1_Silent_p.S404S|BCL11A_uc002sad.1_Silent_p.S286S|BCL11A_uc002saf.1_Silent_p.S404S	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	438					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GACCGTCGTCGGACTTGACCG	0.637			T	IGH@	B-CLL								33	61					0	0	1	0	0
FAM161A	84140	broad.mit.edu	37	2	62067374	62067375	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:62067374_62067375GG>AA	uc010ypo.1	-	3	866_867	c.764_765CC>TT	c.(763-765)TCC>TTT	p.S255F	FAM161A_uc002sbm.3_Missense_Mutation_p.S255F|FAM161A_uc002sbn.3_Missense_Mutation_p.S65F|FAM161A_uc010fcm.1_RNA|FAM161A_uc010fcn.1_Missense_Mutation_p.S146F	NM_032180	NP_115556	Q3B820	F161A_HUMAN	hypothetical protein LOC84140	255					response to stimulus|visual perception	centrosome				large_intestine(2)|ovary(1)	3						TAGATTTCATGGACTCTTCTTT	0.381													19	39					0	0	1	0	0
EHBP1	23301	broad.mit.edu	37	2	63175738	63175738	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:63175738T>C	uc002sby.2	+	14	2344	c.1862T>C	c.(1861-1863)GTT>GCT	p.V621A	EHBP1_uc010fcp.2_Missense_Mutation_p.V586A|EHBP1_uc002sbz.2_Missense_Mutation_p.V586A|EHBP1_uc002scb.2_Missense_Mutation_p.V586A	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	621						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			GATAGCGGGGTTGGAGAGTCA	0.483									Hereditary_Prostate_Cancer				13	33					0	0	1	0	0
PLEK	5341	broad.mit.edu	37	2	68620323	68620323	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:68620323G>A	uc002sen.3	+	7	954	c.792G>A	c.(790-792)AGG>AGA	p.R264R	PLEK_uc010fde.2_Silent_p.R264R	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	264	PH 2.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		GGAAAGTGAGGAAGTTCATCT	0.428													51	117					0	0	1	0	0
ANTXR1	84168	broad.mit.edu	37	2	69409767	69409768	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:69409767_69409768CC>TT	uc002sfg.2	+	16	1684_1685	c.1328_1329CC>TT	c.(1327-1329)CCC>CTT	p.P443L		NM_032208	NP_115584	Q9H6X2	ANTR1_HUMAN	anthrax toxin receptor 1 isoform 1 precursor	443	Cytoplasmic (Potential).				actin cytoskeleton reorganization|substrate adhesion-dependent cell spreading	filopodium membrane|integral to membrane|lamellipodium membrane	actin filament binding|collagen binding|metal ion binding|protein binding|transmembrane receptor activity			ovary(2)|skin(2)	4						CCTTCTTCCCCCCGGAAGTGGT	0.426									Familial_Infantile_Hemangioma				30	71					0	0	1	0	0
GFPT1	2673	broad.mit.edu	37	2	69575352	69575353	+	Missense_Mutation	DNP	GG	TA	TA	rs140814934		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:69575352_69575353GG>TA	uc002sfh.2	-	10	1084_1085	c.905_906CC>TA	c.(904-906)CCC>CTA	p.P302L		NM_002056	NP_002047	Q06210	GFPT1_HUMAN	glucosamine-fructose-6-phosphate	320					dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			skin(1)	1						CAGCTCGTCCGGGGTGATCTCC	0.45													45	125					0	0	1	0	0
CD207	50489	broad.mit.edu	37	2	71060065	71060065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:71060065G>A	uc002shg.2	-	4	730	c.683C>T	c.(682-684)TCA>TTA	p.S228L		NM_015717	NP_056532	Q9UJ71	CLC4K_HUMAN	CD207 antigen, langerin	228	C-type lectin.|Extracellular (Potential).				defense response to virus	endocytic vesicle|integral to membrane	mannose binding			ovary(1)|lung(1)	2						GGTCAGGTGTGAATTCCTGGA	0.498													25	59					0	0	1	0	0
ANKRD53	79998	broad.mit.edu	37	2	71209716	71209717	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:71209716_71209717GG>AA	uc002shl.3	+	5	993_994	c.792_793GG>AA	c.(790-795)AAGGAT>AAAAAT	p.D265N	ANKRD53_uc002shk.3_Missense_Mutation_p.D265N|ANKRD53_uc002shm.3_Missense_Mutation_p.D176N	NM_001115116	NP_001108588	Q8N9V6	ANR53_HUMAN	ankyrin repeat domain 53 isoform a	265											0						GGTTCTTGAAGGATGCCATGTG	0.545													21	52					0	0	1	0	0
EXOC6B	23233	broad.mit.edu	37	2	72786608	72786608	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:72786608G>A	uc010fep.2	-	8	1027	c.889C>T	c.(889-891)CGA>TGA	p.R297*	EXOC6B_uc002sij.2_Nonsense_Mutation_p.R297*	NM_015189	NP_056004	Q9Y2D4	EXC6B_HUMAN	SEC15-like 2	297					protein transport|vesicle docking involved in exocytosis	exocyst				central_nervous_system(2)	2						TGTAGACATCGATAAACTGGA	0.368													9	22					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74474193	74474193	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:74474193A>G	uc002sko.1	-	14	2031	c.2029T>C	c.(2029-2031)TAC>CAC	p.Y677H	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.Y677H|SLC4A5_uc010ffc.1_Missense_Mutation_p.Y677H|SLC4A5_uc002skp.1_Missense_Mutation_p.Y613H|SLC4A5_uc002sks.1_Missense_Mutation_p.Y677H	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	677	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TCGCACTTGTAGGTAGTGATG	0.532													104	162					0	0	1	0	0
SLC4A5	57835	broad.mit.edu	37	2	74475573	74475573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:74475573G>A	uc002sko.1	-	13	1696	c.1694C>T	c.(1693-1695)TCC>TTC	p.S565F	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.S565F|SLC4A5_uc010ffc.1_Missense_Mutation_p.S565F|SLC4A5_uc002skp.1_Missense_Mutation_p.S501F|SLC4A5_uc002sks.1_Missense_Mutation_p.S565F	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	565	Extracellular (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						GCAGAACAAGGAGCCAGCCAT	0.567													15	29					0	0	1	0	0
WDR54	84058	broad.mit.edu	37	2	74652712	74652712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:74652712G>A	uc002slb.2	+	10	949	c.889G>A	c.(889-891)GGT>AGT	p.G297S		NM_032118	NP_115494	Q9H977	WDR54_HUMAN	WD repeat domain 54	297											0						ACACTGTCATGGTGAGTGTGT	0.597													57	105					0	0	1	0	0
TTC31	64427	broad.mit.edu	37	2	74718697	74718697	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:74718697G>A	uc002slt.2	+	8	797	c.774G>A	c.(772-774)CTG>CTA	p.L258L	TTC31_uc002sls.2_Silent_p.L187L|TTC31_uc010yrv.1_Silent_p.L114L|TTC31_uc002slu.2_Silent_p.L114L	NM_022492	NP_071937	Q49AM3	TTC31_HUMAN	tetratricopeptide repeat domain 31	258							binding				0						AGAAGGGACTGAACCAGGAGC	0.572													74	105					0	0	1	0	0
HK2	3099	broad.mit.edu	37	2	75104393	75104394	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:75104393_75104394CC>TT	uc002snd.2	+	8	2902_2903	c.976_977CC>TT	c.(976-978)CCA>TTA	p.P326L		NM_000189	NP_000180	P52789	HXK2_HUMAN	hexokinase 2	326	Regulatory.				apoptotic mitochondrial changes|glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane	ATP binding|glucokinase activity			ovary(1)|lung(1)	2						GAAGCTCAGCCCAGAGCTTCTC	0.545													59	192					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	78639825	78639825	+	RNA	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:78639825G>C	uc002snv.3	-	3		c.1027C>G								Homo sapiens cytochrome c, somatic pseudogene 6, mRNA (cDNA clone IMAGE:4815768).																		CTGAATTCTGGTGTATGAGAT	0.333													6	9					0	0	1	0	0
REG3G	130120	broad.mit.edu	37	2	79253856	79253856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:79253856G>A	uc002snw.2	+	3	179	c.94G>A	c.(94-96)GAA>AAA	p.E32K	REG3G_uc002snx.2_Missense_Mutation_p.E32K|REG3G_uc010ffu.2_Missense_Mutation_p.E32K	NM_198448	NP_940850	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma precursor	32					acute-phase response	extracellular region	sugar binding				0						AACCCAGAAGGAACTGCCCTC	0.532													10	29					0	0	1	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530710	80530710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:80530710C>T	uc002sok.1	-	2	505	c.235G>A	c.(235-237)GAG>AAG	p.E79K	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	79	Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						GCGCGCAGCTCCGAGAGGCTG	0.637										HNSCC(69;0.2)			48	69					0	0	1	0	0
CTNNA2	1496	broad.mit.edu	37	2	80782936	80782936	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:80782936C>T	uc010ysh.1	+	11	1664	c.1659C>T	c.(1657-1659)ATC>ATT	p.I553I	CTNNA2_uc010yse.1_Silent_p.I553I|CTNNA2_uc010ysf.1_Silent_p.I553I|CTNNA2_uc010ysg.1_Silent_p.I553I|CTNNA2_uc010ysi.1_Silent_p.I185I	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	553					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TCATACACATCATCAATGCTG	0.507													74	121					0	0	1	0	0
C2orf89	129293	broad.mit.edu	37	2	85059214	85059214	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:85059214C>T	uc010ysl.1	-	5	1136	c.1047G>A	c.(1045-1047)GAG>GAA	p.E349E	C2orf89_uc002sou.3_Silent_p.E300E	NM_001080824	NP_001074293	Q86V40	CB089_HUMAN	hypothetical protein LOC129293 precursor	349	Extracellular (Potential).					integral to membrane				ovary(1)	1						CGTGTTCTACCTCATAGCCTT	0.552													29	70					0	0	1	0	0
PTCD3	55037	broad.mit.edu	37	2	86362103	86362103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:86362103G>A	uc002sqw.2	+	21	1837	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K	PTCD3_uc002sqx.1_Missense_Mutation_p.E181K|SNORD94_uc010fgr.1_5'Flank	NM_017952	NP_060422	Q96EY7	PTCD3_HUMAN	pentatricopeptide repeat domain 3 precursor	591	PPR 10.					mitochondrion	protein binding			ovary(1)	1						GAGAACTCAGGAAGCCTGGTG	0.458													31	85					0	0	1	0	0
SMYD1	150572	broad.mit.edu	37	2	88383988	88383988	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:88383988G>A	uc002ssr.2	+	2	293	c.291G>A	c.(289-291)GGG>GGA	p.G97G	SMYD1_uc002ssq.1_Silent_p.G92G	NM_198274	NP_938015	Q8NB12	SMYD1_HUMAN	SET and MYND domain containing 1	97					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						AGAGATATGGGAAGGTGCCCA	0.527													19	53					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89399539	89399539	+	RNA	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:89399539A>C	uc010ytr.1	-	46		c.4906T>G			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AAACCAGGCTAAATAATTGCT	0.512													60	120					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89459307	89459307	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:89459307G>A	uc010ytr.1	-	29		c.3887C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TGGTGAGGGTGAAATCTGTCC	0.478													61	128					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89475915	89475915	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:89475915C>T	uc010ytr.1	-	28		c.3566G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCCACTGAATCTGTCTGGGAC	0.493													76	148					0	0	1	0	0
GGT8P	645367	broad.mit.edu	37	2	91968598	91968598	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:91968598G>A	uc010fho.1	+	2		c.929G>A				NR_003503				Homo sapiens cDNA FLJ31276 fis, clone KIDNE2006376, weakly similar to GAMMA-GLUTAMYLTRANSPEPTIDASE 1 PRECURSOR (EC 2.3.2.2).												0						GAAAACAAGCGGACCGTCATC	0.677													22	86					0	0	1	0	0
TEKT4	150483	broad.mit.edu	37	2	95537510	95537510	+	Silent	SNP	G	A	A	rs111349391		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:95537510G>A	uc002stw.1	+	1	279	c.186G>A	c.(184-186)TCG>TCA	p.S62S	uc002stv.1_Intron|TEKT4_uc010fhr.1_RNA	NM_144705	NP_653306	Q8WW24	TEKT4_HUMAN	tektin 4	62					cell projection organization|microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|breast(1)|skin(1)	3						GCGACCAGTCGGAGCGGCAGC	0.682													11	47					0	0	1	0	0
ZNF514	84874	broad.mit.edu	37	2	95815453	95815453	+	Silent	SNP	G	A	A	rs140564139		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:95815453G>A	uc002sue.1	-	5	1151	c.777C>T	c.(775-777)CCC>CCT	p.P259P	ZNF514_uc002sud.1_Silent_p.P332P	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	259					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCATTCATAGGGCTTTTCTC	0.418													34	74					0	0	1	0	0
PROM2	150696	broad.mit.edu	37	2	95954275	95954275	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:95954275C>T	uc002suh.1	+	22	2512	c.2379C>T	c.(2377-2379)ATC>ATT	p.I793I	PROM2_uc002sui.2_Silent_p.I793I|PROM2_uc002suj.2_Silent_p.I447I|PROM2_uc002suk.2_Silent_p.I793I|PROM2_uc002sul.2_Silent_p.I319I|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	793	Helical; (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						TCTTCCTGATCCCCAGCATCA	0.607													40	85					0	0	1	0	0
ANKRD36B	57730	broad.mit.edu	37	2	98171568	98171568	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:98171568A>C	uc010yvc.1	-	14	1406	c.1126T>G	c.(1126-1128)TTG>GTG	p.L376V	ANKRD36B_uc010yve.1_RNA|ANKRD36B_uc010fif.2_RNA	NM_025190	NP_079466	Q8N2N9	AN36B_HUMAN	ankyrin repeat domain 36B	376											0						GCTGTATTCAAAGCAGAATCT	0.323													14	27					0	0	1	0	0
ZAP70	7535	broad.mit.edu	37	2	98354002	98354002	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:98354002G>A	uc002syd.1	+	11	1563	c.1356G>A	c.(1354-1356)CTG>CTA	p.L452L	ZAP70_uc002sye.1_Silent_p.L342L|ZAP70_uc002syf.1_Silent_p.L145L	NM_001079	NP_001070	P43403	ZAP70_HUMAN	zeta-chain associated protein kinase 70kDa	452	Protein kinase.				immune response|intracellular protein kinase cascade|positive thymic T cell selection|T cell receptor signaling pathway	cytosol|T cell receptor complex	ATP binding|non-membrane spanning protein tyrosine kinase activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						TGAAGTACCTGGAGGAGAAGA	0.622													19	68					0	0	1	0	0
CNGA3	1261	broad.mit.edu	37	2	98986506	98986506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:98986506G>A	uc002syt.2	+	2	485	c.68G>A	c.(67-69)CGA>CAA	p.R23Q	CNGA3_uc002syu.2_Missense_Mutation_p.R23Q	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	23					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						ACCTCAGACCGAGATCTCAAT	0.507													17	42					0	0	1	0	0
C2orf64	493753	broad.mit.edu	37	2	99220616	99220616	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:99220616G>A	uc002syz.2	-	2	225	c.138C>T	c.(136-138)TAC>TAT	p.Y46Y	C2orf64_uc002sza.2_Intron	NM_001008215	NP_001008216	Q86WW8	COA5_HUMAN	hypothetical protein LOC493753	46											0						AAGAGTTGCAGTATCCTTCCT	0.338													28	71					0	0	1	0	0
LYG2	254773	broad.mit.edu	37	2	99870699	99870699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:99870699C>T	uc002szw.1	-	2	138	c.25G>A	c.(25-27)GGA>AGA	p.G9R	MRPL30_uc002szl.1_Intron|LYG2_uc010fip.1_Missense_Mutation_p.G9R|LYG2_uc002szx.1_Missense_Mutation_p.G9R	NM_175735	NP_783862	Q86SG7	LYG2_HUMAN	lysozyme G-like 2 precursor	9					cell wall macromolecule catabolic process|peptidoglycan catabolic process	extracellular region	lysozyme activity			ovary(1)	1						GCAATTAGTCCCCAAAACACC	0.418													33	58					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100170782	100170782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:100170782C>T	uc002tag.2	-	23	3786	c.3550G>A	c.(3550-3552)GAA>AAA	p.E1184K	AFF3_uc002taf.2_Missense_Mutation_p.E1209K	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1184					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CCTCGGTTTTCCTTGGCCAGG	0.448													48	85					0	0	1	0	0
IL1RL2	8808	broad.mit.edu	37	2	102842385	102842385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:102842385G>A	uc002tbs.2	+	9	1145	c.1019G>A	c.(1018-1020)GGA>GAA	p.G340E	IL1RL2_uc002tbt.2_Missense_Mutation_p.G222E	NM_003854	NP_003845	Q9HB29	ILRL2_HUMAN	interleukin 1 receptor-like 2 precursor	340	Helical; (Potential).				cellular defense response|innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity			ovary(2)	2						TACTTGATAGGAGGGCTTATC	0.343													8	19					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103125390	103125390	+	Missense_Mutation	SNP	C	T	T	rs146323025		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:103125390C>T	uc002tbz.3	+	6	1943	c.1486C>T	c.(1486-1488)CGT>TGT	p.R496C		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	496	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						GCTTCATATTCGTGTAAGTTA	0.378													24	53					0	0	1	0	0
SLC9A4	389015	broad.mit.edu	37	2	103149075	103149075	+	Silent	SNP	G	A	A	rs145203765		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:103149075G>A	uc002tbz.3	+	12	2782	c.2325G>A	c.(2323-2325)TCG>TCA	p.S775S		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	775	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						AGGTTCGGTCGAGGTGGACAG	0.522													12	15					0	0	1	0	0
UXS1	80146	broad.mit.edu	37	2	106739478	106739478	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:106739478T>C	uc002tdm.2	-	9	790	c.692A>G	c.(691-693)TAC>TGC	p.Y231C	UXS1_uc002tdl.2_Missense_Mutation_p.Y63C|UXS1_uc002tdn.2_Missense_Mutation_p.Y236C|UXS1_uc002tdo.2_Missense_Mutation_p.Y174C|UXS1_uc010ywh.1_Missense_Mutation_p.Y75C	NM_025076	NP_079352	Q8NBZ7	UXS1_HUMAN	UDP-glucuronate decarboxylase 1	231	Lumenal (Potential).|NAD.				cellular metabolic process	Golgi cisterna membrane|integral to membrane	coenzyme binding|UDP-glucuronate decarboxylase activity			ovary(2)	2						GCCTTCATCGTAGCAGGCCCG	0.517													30	81					0	0	1	0	0
PLGLA	285189	broad.mit.edu	37	2	107007464	107007464	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:107007464C>T	uc002tdp.2	+	3		c.313C>T				NR_003506				Homo sapiens plasminogen-like A (PLGLA), non-coding RNA.												0						TCCACTTCTCCCCGCAGACCT	0.323													8	7					0	0	1	0	0
RGPD3	653489	broad.mit.edu	37	2	107032349	107032349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:107032349C>T	uc010ywi.1	-	21	5078	c.5021G>A	c.(5020-5022)CGG>CAG	p.R1674Q		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1674					intracellular transport		binding			ovary(1)	1						CTCTATTTCCCGAAGCAGGCC	0.443													44	150					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112786132	112786132	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:112786132C>T	uc002thk.1	+	19	2813	c.2691C>T	c.(2689-2691)ATC>ATT	p.I897I	MERTK_uc002thl.1_Silent_p.I721I	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	897	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						ACTTGAACATCGACCCTGACT	0.542													58	142					0	0	1	0	0
FBLN7	129804	broad.mit.edu	37	2	112942874	112942874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:112942874C>T	uc002tho.1	+	7	1176	c.905C>T	c.(904-906)CCC>CTC	p.P302L	FBLN7_uc002thn.2_Missense_Mutation_p.P302L|FBLN7_uc010fki.1_Missense_Mutation_p.P256L|FBLN7_uc010fkj.1_Missense_Mutation_p.P168L	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	302	EGF-like 3; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						CCTGAGTGCCCCGAGGGCAGC	0.617													20	66					0	0	1	0	0
IL1B	3553	broad.mit.edu	37	2	113588001	113588001	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:113588001G>A	uc002tii.1	-	7	834	c.747C>T	c.(745-747)TTC>TTT	p.F249F	IL1B_uc002tih.1_Silent_p.F218F	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	249					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	TCCCTCCCAGGAAGACGGGCA	0.478													55	116					0	0	1	0	0
IL1F7	27178	broad.mit.edu	37	2	113676284	113676284	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:113676284G>A	uc002tij.2	+	5	597	c.555G>A	c.(553-555)GAG>GAA	p.E185E	IL1F7_uc002tik.2_Silent_p.E164E|IL1F7_uc002til.2_Silent_p.E145E|IL1F7_uc002tim.2_Silent_p.E124E|IL1F7_uc002tin.2_Silent_p.E159E	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	185					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						ATTGTAATGAGCCTGTTGGGG	0.493													15	37					0	0	1	0	0
IL1F6	27179	broad.mit.edu	37	2	113765514	113765514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:113765514C>T	uc010yxr.1	+	4	370	c.370C>T	c.(370-372)CCT>TCT	p.P124S		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	124					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						TGTGGCTTTCCCTGGCTGGTT	0.507													32	66					0	0	1	0	0
IL1F10	84639	broad.mit.edu	37	2	113832845	113832845	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:113832845C>T	uc002tiu.2	+	5	438	c.363C>T	c.(361-363)TTC>TTT	p.F121F	IL1F10_uc002tiv.2_Silent_p.F121F|IL1F10_uc002tiw.2_Silent_p.F113F	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	121						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						CTGGCTGGTTCCTGTGTGGCC	0.592													45	93					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113993113	113993113	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:113993113G>A	uc010yxt.1	-	9	1111	c.945C>T	c.(943-945)TCC>TCT	p.S315S	PAX8_uc010yxu.1_Intron|PAX8_uc010yxv.1_Intron|PAX8_uc002tjm.2_Intron|PAX8_uc002tjn.2_Intron|uc002tjp.2_RNA|LOC654433_uc002tjq.3_RNA|LOC654433_uc010fks.2_RNA|LOC654433_uc010fkt.2_RNA|LOC654433_uc002tjr.3_5'Flank	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	315	Ser-rich.				branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						AGCTAGAACTGGACACCTCGG	0.597			T	PPARG	follicular thyroid		Thyroid dysgenesis 						19	30					0	0	1	0	0
PAX8	7849	broad.mit.edu	37	2	113994189	113994189	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:113994189G>A	uc010yxt.1	-	8	1053	c.887C>T	c.(886-888)CCC>CTC	p.P296L	PAX8_uc010yxu.1_Missense_Mutation_p.P296L|PAX8_uc010yxv.1_Missense_Mutation_p.P296L|PAX8_uc002tjm.2_Intron|PAX8_uc002tjn.2_Intron|uc002tjp.2_Intron|LOC654433_uc002tjq.3_RNA|LOC654433_uc010fks.2_Intron|LOC654433_uc010fkt.2_Intron|LOC654433_uc002tjr.3_RNA	NM_003466	NP_003457	Q06710	PAX8_HUMAN	paired box 8 isoform PAX8A	296					branching involved in ureteric bud morphogenesis|cellular response to gonadotropin stimulus|central nervous system development|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesonephros development|metanephric collecting duct development|metanephric comma-shaped body morphogenesis|metanephric distal convoluted tubule development|metanephric nephron tubule formation|metanephric S-shaped body morphogenesis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|otic vesicle development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|pronephric field specification|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of thyroid-stimulating hormone secretion|thyroid gland development|transcription, DNA-dependent	nucleoplasm	protein binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid-stimulating hormone receptor activity			ovary(1)|lung(1)	2						TGCCACCACGGGGTAGGTCTG	0.687			T	PPARG	follicular thyroid		Thyroid dysgenesis 						3	7					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119739197	119739197	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:119739197G>T	uc002tln.1	+	10	998	c.866G>T	c.(865-867)GGT>GTT	p.G289V	MARCO_uc010yyf.1_Missense_Mutation_p.G211V	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	289	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						TTCATCTTAGGTTTGGCTGGT	0.438													23	54					2.27525e-19	2.31291e-19	1	1	0
CNTNAP5	129684	broad.mit.edu	37	2	125262073	125262073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:125262073G>A	uc002tno.2	+	8	1628	c.1264G>A	c.(1264-1266)GGT>AGT	p.G422S	CNTNAP5_uc010flu.2_Missense_Mutation_p.G423S	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	422	Laminin G-like 2.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GAGCCTGGAGGGTGGAATCCT	0.512													28	64					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128354040	128354040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:128354040C>T	uc002top.2	+	19	2301	c.2248C>T	c.(2248-2250)CAT>TAT	p.H750Y		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	750	IQ 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GTTCCAGGATCATCAGGACAC	0.617													7	18					0	0	1	0	0
MYO7B	4648	broad.mit.edu	37	2	128381868	128381868	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:128381868C>T	uc002top.2	+	29	3995	c.3942C>T	c.(3940-3942)GTC>GTT	p.V1314V	MYO7B_uc002toq.1_Silent_p.V167V|MYO7B_uc002tor.1_Silent_p.V167V	NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	1314	FERM 1.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		TCCGAGGAGTCTGGTCTGGCG	0.592													9	3					0	0	1	0	0
SAP130	79595	broad.mit.edu	37	2	128712758	128712758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:128712758G>A	uc002tpp.2	-	15	2329	c.2197C>T	c.(2197-2199)CCC>TCC	p.P733S	SAP130_uc002tpn.2_Missense_Mutation_p.P493S|SAP130_uc002tpo.2_Missense_Mutation_p.P513S|SAP130_uc010fmd.2_Missense_Mutation_p.P768S|SAP130_uc002tpq.1_Missense_Mutation_p.P741S	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	733	Pro-rich.				histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		TGTGACGGGGGACTGGCTGCT	0.562													43	101					0	0	1	0	0
LOC440905	440905	broad.mit.edu	37	2	130785891	130785891	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:130785891C>T	uc002tpz.2	-	11		c.2977G>A			LOC440905_uc002tpy.1_RNA	NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						CCTGGGTTTCCTTCCAGTGAG	0.498													13	16					0	0	1	0	0
POTEF	728378	broad.mit.edu	37	2	130832582	130832582	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:130832582C>T	uc010fmh.2	-	17	2863	c.2463G>A	c.(2461-2463)CAG>CAA	p.Q821Q		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	821	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						CAAACATGATCTGGGTCATCT	0.592													86	213					0	0	1	0	0
GPR148	344561	broad.mit.edu	37	2	131487744	131487744	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:131487744C>T	uc002trv.1	+	1	1022	c.1020C>T	c.(1018-1020)CAC>CAT	p.H340H		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	340	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					CCAGGAGGCACCAGGCCATCT	0.522													6	8					0	0	1	0	0
R3HDM1	23518	broad.mit.edu	37	2	136467052	136467052	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:136467052C>T	uc002tuo.2	+	21	2774	c.2404C>T	c.(2404-2406)CCT>TCT	p.P802S	R3HDM1_uc010fni.2_Missense_Mutation_p.P801S|R3HDM1_uc002tup.2_Missense_Mutation_p.P747S|R3HDM1_uc010zbh.1_Missense_Mutation_p.P550S	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	802							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		AGTACAATTTCCTCGAACCAC	0.388													30	69					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137813993	137813993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:137813993C>T	uc002tva.1	+	2	50	c.50C>T	c.(49-51)CCG>CTG	p.P17L	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_5'UTR	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CCTGTAGGTCCGTGGGGAAGG	0.468													22	53					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137814478	137814478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:137814478C>T	uc002tva.1	+	2	535	c.535C>T	c.(535-537)CCT>TCT	p.P179S	THSD7B_uc010zbj.1_RNA|THSD7B_uc002tvb.2_Missense_Mutation_p.P69S	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CATAGCTCCCCCTCTCTTTGG	0.488													86	198					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141215218	141215218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:141215218G>A	uc002tvj.1	-	61	10600	c.9628C>T	c.(9628-9630)CCT>TCT	p.P3210S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3210	Extracellular (Potential).|LDL-receptor class B 31.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCTTGATTAGGGACTGTAATA	0.403										TSP Lung(27;0.18)			37	71					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141243044	141243044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:141243044C>T	uc002tvj.1	-	59	10265	c.9293G>A	c.(9292-9294)GGA>GAA	p.G3098E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3098	Extracellular (Potential).|LDL-receptor class B 28.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GAGGTTTTTTCCAATCCAATC	0.373										TSP Lung(27;0.18)			8	27					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141299511	141299511	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:141299511G>A	uc002tvj.1	-	44	8196	c.7224C>T	c.(7222-7224)TTC>TTT	p.F2408F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2408	Extracellular (Potential).|LDL-receptor class B 26.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCAAACTGAGGAAAGTCCCTG	0.363										TSP Lung(27;0.18)			17	24					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141474287	141474287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:141474287C>T	uc002tvj.1	-	36	6829	c.5857G>A	c.(5857-5859)GGA>AGA	p.G1953R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1953	Extracellular (Potential).|LDL-receptor class B 19.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TCCACTCTTCCCAAGCCATTG	0.398										TSP Lung(27;0.18)			34	70					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141607771	141607771	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:141607771G>A	uc002tvj.1	-	29	5811	c.4839C>T	c.(4837-4839)TTC>TTT	p.F1613F	LRP1B_uc010fnl.1_Silent_p.F795F	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1613	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGATGCATCGAAGTCTATCA	0.373										TSP Lung(27;0.18)			36	65					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141762918	141762918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:141762918C>T	uc002tvj.1	-	15	3461	c.2489G>A	c.(2488-2490)GGG>GAG	p.G830E	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	830	Extracellular (Potential).|EGF-like 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCAAGTTGTCCCATTTTCATC	0.418										TSP Lung(27;0.18)			21	36					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152417610	152417610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:152417610C>T	uc010fnx.2	-	95	14202	c.14011G>A	c.(14011-14013)GAA>AAA	p.E4671K	NEB_uc002txr.2_Missense_Mutation_p.E1094K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4671	Nebulin 127.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGATAATTTTCTTTATATTTT	0.343													3	21					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152499777	152499777	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:152499777G>A	uc010fnx.2	-	58	8238	c.8047C>T	c.(8047-8049)CAG>TAG	p.Q2683*		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2683	Nebulin 72.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCAAAATCTGGGTGGCTCGT	0.418													41	65					0	0	1	0	0
NEB	4703	broad.mit.edu	37	2	152500364	152500364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:152500364G>A	uc010fnx.2	-	57	8115	c.7924C>T	c.(7924-7926)CAT>TAT	p.H2642Y		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2642	Nebulin 71.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGCCGAGCATGGATGACATCG	0.502													69	187					0	0	1	0	0
CACNB4	785	broad.mit.edu	37	2	152698471	152698471	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:152698471C>T	uc002tya.2	-	13	1316	c.1248G>A	c.(1246-1248)AGG>AGA	p.R416R	CACNB4_uc002txy.2_Silent_p.R382R|CACNB4_uc002txz.2_Silent_p.R398R|CACNB4_uc010fnz.2_Intron	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	416					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	AGCCCAAATTCCTTCCCAGCA	0.502													71	122					0	0	1	0	0
FMNL2	114793	broad.mit.edu	37	2	153486409	153486409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:153486409G>A	uc002tye.2	+	20	2907	c.2540G>A	c.(2539-2541)AGT>AAT	p.S847N	FMNL2_uc010fob.2_Missense_Mutation_p.S303N|FMNL2_uc002tyf.2_Missense_Mutation_p.S296N	NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	847	FH2.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						AAACTTCAGAGTTTAGATCTG	0.403													3	9					0	0	1	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555318	155555318	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:155555318G>A	uc002tyv.1	+	1	226	c.31G>A	c.(31-33)GAT>AAT	p.D11N	KCNJ3_uc010zce.1_Missense_Mutation_p.D11N	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	11	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	ATTTGGGGACGATTATCAGGT	0.602													33	46					0	0	1	0	0
CYTIP	9595	broad.mit.edu	37	2	158272405	158272405	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:158272405C>T	uc002tzj.1	-	8	936	c.864G>A	c.(862-864)AAG>AAA	p.K288K	CYTIP_uc010zcl.1_Silent_p.K182K	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	288	Ser-rich.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CATCCCCCTCCTTGGGGATAA	0.537													38	52					0	0	1	0	0
PLA2R1	22925	broad.mit.edu	37	2	160824099	160824099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:160824099G>A	uc002ube.1	-	20	3062	c.2855C>T	c.(2854-2856)CCA>CTA	p.P952L	PLA2R1_uc010zcp.1_Missense_Mutation_p.P952L|PLA2R1_uc002ubf.2_Missense_Mutation_p.P952L	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	952	Extracellular (Potential).				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						ATGTTGTTTTGGTGTATCTTT	0.378													32	65					0	0	1	0	0
RBMS1	5937	broad.mit.edu	37	2	161143514	161143514	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:161143514C>A	uc002ubo.2	-	7	1166	c.722G>T	c.(721-723)GGA>GTA	p.G241V	RBMS1_uc002ubj.2_Missense_Mutation_p.G208V|RBMS1_uc002ubk.2_Missense_Mutation_p.G208V|RBMS1_uc002ubl.2_Missense_Mutation_p.G239V|RBMS1_uc002ubn.2_Missense_Mutation_p.G241V|RBMS1_uc002ubi.3_Missense_Mutation_p.G241V|RBMS1_uc002ubm.2_Missense_Mutation_p.G208V|RBMS1_uc002ubp.2_Missense_Mutation_p.G241V|RBMS1_uc010fox.2_Missense_Mutation_p.G241V	NM_016836	NP_058520	P29558	RBMS1_HUMAN	RNA binding motif, single stranded interacting	241					DNA replication|RNA processing	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding|single-stranded DNA binding				0						CCATGGTCTTCCATTAGGGAT	0.443													54	117					8.37424e-50	8.58986e-50	1	1	0
SLC4A10	57282	broad.mit.edu	37	2	162711576	162711576	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:162711576A>G	uc002ubx.3	+	5	697	c.513A>G	c.(511-513)AGA>AGG	p.R171R	SLC4A10_uc010fpa.1_Silent_p.R183R|SLC4A10_uc010zcr.1_RNA|SLC4A10_uc002uby.3_Silent_p.R171R|SLC4A10_uc010zcs.1_Silent_p.R182R	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	171	Cytoplasmic (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TTGAATTGAGAAGTTGTATTC	0.403													23	57					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163374610	163374611	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:163374610_163374611GG>AA	uc002uch.1	-	4	733_734	c.521_522CC>TT	c.(520-522)TCC>TTT	p.S174F	KCNH7_uc002uci.2_Missense_Mutation_p.S174F	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	174	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CTTGTGGTAAGGACTGCTTTCT	0.401													24	55					0	0	1	0	0
COBLL1	22837	broad.mit.edu	37	2	165551083	165551083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:165551083C>T	uc010zcw.1	-	15	3258	c.3134G>A	c.(3133-3135)GGT>GAT	p.G1045D	COBLL1_uc002ucp.2_Missense_Mutation_p.G978D|COBLL1_uc002ucq.2_Missense_Mutation_p.G940D|COBLL1_uc010zcx.1_Missense_Mutation_p.G986D|COBLL1_uc002ucn.2_Missense_Mutation_p.G406D|COBLL1_uc002uco.2_Missense_Mutation_p.G709D	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	1016										ovary(2)|pancreas(1)	3						AGGAGCCTGACCGATGACATC	0.468													15	42					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	165950986	165950986	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:165950986A>G	uc002ucx.2	-	26	4926	c.4434T>C	c.(4432-4434)TTT>TTC	p.F1478F	SCN3A_uc010zcy.1_5'Flank|SCN3A_uc002ucy.2_Silent_p.F1429F|SCN3A_uc002ucz.2_Silent_p.F1429F	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1478						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CTTGACCTCCAAAGTAAAGAC	0.328													51	70					0	0	1	0	0
SCN2A	6326	broad.mit.edu	37	2	166226664	166226664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:166226664G>A	uc002udc.2	+	20	3994	c.3704G>A	c.(3703-3705)CGA>CAA	p.R1235Q	SCN2A_uc002udd.2_Missense_Mutation_p.R1235Q|SCN2A_uc002ude.2_Missense_Mutation_p.R1235Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1235	III.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	ATTGAGCAGCGAAAAACCATT	0.318													28	48					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166894361	166894361	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:166894361C>T	uc010zcz.1	-	15	2856	c.2838G>A	c.(2836-2838)TGG>TGA	p.W946*	SCN1A_uc002udo.3_Nonsense_Mutation_p.W826*|SCN1A_uc010fpk.2_Nonsense_Mutation_p.W798*	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	957	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CCATACAGTCCCACATGGTCT	0.493													65	201					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166903457	166903457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:166903457C>T	uc010zcz.1	-	9	1218	c.1200G>A	c.(1198-1200)ATG>ATA	p.M400I	SCN1A_uc002udo.3_Missense_Mutation_p.M269I|SCN1A_uc010fpk.2_Missense_Mutation_p.M269I	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	400	Helical; Name=S6 of repeat I; (By similarity).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	CAAAAAATATCATGTACGTTT	0.383													35	69					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167055535	167055535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:167055535G>A	uc010fpl.2	-	27	5922	c.5581C>T	c.(5581-5583)CCT>TCT	p.P1861S	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1872						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ACTTTGGAAGGATTTGCAGAC	0.433													48	84					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167085304	167085304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:167085304G>A	uc010fpl.2	-	22	4411	c.4070C>T	c.(4069-4071)TCC>TTC	p.S1357F	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1368	III.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAAACATTCGGAACGATTTGG	0.403													95	165					0	0	1	0	0
SCN9A	6335	broad.mit.edu	37	2	167159615	167159615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:167159615C>T	uc010fpl.2	-	7	1227	c.886G>A	c.(886-888)GAA>AAA	p.E296K	SCN9A_uc002udr.1_Missense_Mutation_p.E167K|SCN9A_uc002uds.1_Missense_Mutation_p.E167K|SCN9A_uc002udt.1_Missense_Mutation_p.E167K	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	296	I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AAGTCTTCTTCACTCTCTAGG	0.308													5	7					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167262447	167262447	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:167262447G>A	uc002udu.1	-	25	4819	c.4692C>T	c.(4690-4692)CTC>CTT	p.L1564L		NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1564					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						CAGCCATGGGGAGGTCCAAAG	0.443													49	103					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167297941	167297941	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:167297941A>G	uc002udu.1	-	14	2249	c.2122T>C	c.(2122-2124)TTT>CTT	p.F708L	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	708	Helical; Name=S6 of repeat II; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ATCAGGTAAAAAGGAATACAC	0.393													17	22					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168100119	168100119	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:168100119A>T	uc002udx.2	+	8	2235	c.2217A>T	c.(2215-2217)CAA>CAT	p.Q739H	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.Q564H|XIRP2_uc010fpq.2_Missense_Mutation_p.Q517H|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	564	Xin 6.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCGAAACTCAACCATTATATG	0.378													15	44					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168102800	168102800	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:168102800T>C	uc002udx.2	+	8	4916	c.4898T>C	c.(4897-4899)GTT>GCT	p.V1633A	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.V1458A|XIRP2_uc010fpq.2_Missense_Mutation_p.V1411A|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1458					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAGGGAAATGTTAATTTGACT	0.328													18	18					0	0	1	0	0
STK39	27347	broad.mit.edu	37	2	169020267	169020267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:169020267C>T	uc002uea.2	-	4	714	c.554G>A	c.(553-555)AGA>AAA	p.R185K		NM_013233	NP_037365	Q9UEW8	STK39_HUMAN	serine threonine kinase 39 (STE20/SPS1 homolog,	185	Protein kinase.				response to stress	cytoplasm|nucleus	ATP binding|protein binding|receptor signaling protein serine/threonine kinase activity			central_nervous_system(1)|skin(1)	2						CTGACCGTTTCTGTGTAGATA	0.388													22	35					0	0	1	0	0
ABCB11	8647	broad.mit.edu	37	2	169783755	169783755	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:169783755C>T	uc002ueo.1	-	26	3655	c.3529G>A	c.(3529-3531)GGA>AGA	p.G1177R	ABCB11_uc010zda.1_Missense_Mutation_p.G595R|ABCB11_uc010zdb.1_Missense_Mutation_p.G653R	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1177	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GTGTTGTCTCCATACTTGATA	0.433													41	101					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170011003	170011003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:170011003C>T	uc002ues.2	-	66	12475	c.12262G>A	c.(12262-12264)GAT>AAT	p.D4088N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4088	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CAATCATAATCAACAGCTTGG	0.363													36	53					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170034445	170034445	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:170034445A>T	uc002ues.2	-	53	10474	c.10261T>A	c.(10261-10263)TAT>AAT	p.Y3421N		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3421	LDL-receptor class B 34.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCTGTCCAATAAATAGTGTCT	0.443													66	116					0	0	1	0	0
KBTBD10	10324	broad.mit.edu	37	2	170349485	170349485	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:170349485A>G	uc010zdh.1	+	6	546	c.488A>G	c.(487-489)AAA>AGA	p.K163R	BBS5_uc002uet.2_Missense_Mutation_p.K163R|BBS5_uc010fpw.2_Missense_Mutation_p.K163R	NM_152384	NP_689597	O60662	KBTBA_HUMAN	Bardet-Biedl syndrome 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					striated muscle contraction	centrosome|nucleolus|plasma membrane|pseudopodium|ruffle					0						GTATATGATAAAATAAATGGA	0.328													50	98					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171055732	171055732	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:171055732G>A	uc002ufy.2	+	2	160	c.17G>A	c.(16-18)GGA>GAA	p.G6E	MYO3B_uc002ufv.2_5'UTR|MYO3B_uc010fqb.1_5'UTR|MYO3B_uc002ufz.2_Missense_Mutation_p.G6E|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002uga.2_5'UTR	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	6					response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						CATCTGTATGGATTATTTCAC	0.393													27	36					0	0	1	0	0
MYO3B	140469	broad.mit.edu	37	2	171259384	171259384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:171259384G>A	uc002ufy.2	+	19	2299	c.2156G>A	c.(2155-2157)GGG>GAG	p.G719E	MYO3B_uc002ufv.2_Missense_Mutation_p.G706E|MYO3B_uc010fqb.1_Missense_Mutation_p.G706E|MYO3B_uc002ufz.2_Missense_Mutation_p.G719E|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	719	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						ATGAATGTGGGGATCTTGGAT	0.418													31	89					0	0	1	0	0
GAD1	2571	broad.mit.edu	37	2	171687555	171687555	+	Missense_Mutation	SNP	C	T	T	rs150945113		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:171687555C>T	uc002ugi.2	+	5	822	c.400C>T	c.(400-402)CGC>TGC	p.R134C	GAD1_uc002ugh.2_Missense_Mutation_p.R134C	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	134					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	GACATTTGATCGCTCCACCAA	0.542													32	55					0	0	1	0	0
SLC25A12	8604	broad.mit.edu	37	2	172725232	172725232	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:172725232G>A	uc002uhh.2	-	3	257	c.168C>T	c.(166-168)ATC>ATT	p.I56I	SLC25A12_uc010fqh.2_5'UTR|SLC25A12_uc010zdv.1_RNA	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	56					gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	AGAGCTGCACGATCTTTGGGT	0.393													39	64					0	0	1	0	0
SLC25A12	8604	broad.mit.edu	37	2	172750778	172750779	+	Translation_Start_Site	DNP	GG	TA	TA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:172750778_172750779GG>TA	uc002uhh.2	-	1	35_36	c.-54_-53CC>TA	c.(-56--51)GCCCTG>GCTATG		SLC25A12_uc010fqh.2_Translation_Start_Site|SLC25A12_uc010zdv.1_RNA	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12						gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	CGAGCTGTCAGGGCGCGCGCGC	0.698													4	8					0	0	1	0	0
NFE2L2	4780	broad.mit.edu	37	2	178095817	178095817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:178095817C>T	uc002ulh.3	-	5	2069	c.1514G>A	c.(1513-1515)GGT>GAT	p.G505D	NFE2L2_uc002ulg.3_Missense_Mutation_p.G489D|NFE2L2_uc010zfa.1_Missense_Mutation_p.G482D|NFE2L2_uc002uli.3_Missense_Mutation_p.G489D	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	505	Basic motif.				transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			TTTATTCTTACCCCTCCTACG	0.348			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			19	69					0	0	1	0	0
NFE2L2	4780	broad.mit.edu	37	2	178096113	178096114	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:178096113_178096114GG>AA	uc002ulh.3	-	5	1772_1773	c.1217_1218CC>TT	c.(1216-1218)CCC>CTT	p.P406L	NFE2L2_uc002ulg.3_Missense_Mutation_p.P390L|NFE2L2_uc010zfa.1_Missense_Mutation_p.P383L|NFE2L2_uc002uli.3_Missense_Mutation_p.P390L	NM_006164	NP_006155	Q16236	NF2L2_HUMAN	nuclear factor erythroid 2-like 2 isoform 1	406					transcription from RNA polymerase II promoter	centrosome|cytosol|nucleus|plasma membrane	protein dimerization activity|protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1			Epithelial(96;0.00442)|OV - Ovarian serous cystadenocarcinoma(117;0.00739)|all cancers(119;0.0195)|LUSC - Lung squamous cell carcinoma(2;0.036)|Lung(16;0.0935)			ATGGTGACAAGGGTTGTACCAT	0.485			Mis		NSCLC|HNSCC					HNSCC(56;0.16)			37	95					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179404603	179404603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179404603C>T	uc010zfg.1	-	301	90709	c.90485G>A	c.(90484-90486)GGA>GAA	p.G30162E	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G23857E|TTN_uc010zfi.1_Missense_Mutation_p.G23790E|TTN_uc010zfj.1_Missense_Mutation_p.G23665E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31089							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATGGTTTTCCTTTGATTGG	0.393													28	48					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179408277	179408277	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179408277G>A	uc010zfg.1	-	296	88943	c.88719C>T	c.(88717-88719)ATC>ATT	p.I29573I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.I23268I|TTN_uc010zfi.1_Silent_p.I23201I|TTN_uc010zfj.1_Silent_p.I23076I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30500							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTCTCAACGATGTAATTGT	0.413													5	18					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179418030	179418030	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179418030C>T	uc010zfg.1	-	284	82117	c.81893G>A	c.(81892-81894)AGA>AAA	p.R27298K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R20993K|TTN_uc010zfi.1_Missense_Mutation_p.R20926K|TTN_uc010zfj.1_Missense_Mutation_p.R20801K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28225							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGTGGAGGTCTGCCTTTAAA	0.438													65	117					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179418695	179418695	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179418695C>T	uc010zfg.1	-	282	81663	c.81439G>A	c.(81439-81441)GGA>AGA	p.G27147R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G20842R|TTN_uc010zfi.1_Missense_Mutation_p.G20775R|TTN_uc010zfj.1_Missense_Mutation_p.G20650R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28074							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGACCCTGTCCAGCAGCGTTT	0.413													11	23					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179428646	179428646	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179428646A>G	uc010zfg.1	-	275	74733	c.74509T>C	c.(74509-74511)TAC>CAC	p.Y24837H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.Y18532H|TTN_uc010zfi.1_Missense_Mutation_p.Y18465H|TTN_uc010zfj.1_Missense_Mutation_p.Y18340H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25764							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAATGATGTAATGTGAAATA	0.453													35	66					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179431916	179431916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179431916C>T	uc010zfg.1	-	275	71463	c.71239G>A	c.(71239-71241)GGT>AGT	p.G23747S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G17442S|TTN_uc010zfi.1_Missense_Mutation_p.G17375S|TTN_uc010zfj.1_Missense_Mutation_p.G17250S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24674							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCACTGCCACCATCTTGAAGT	0.443													41	85					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179438970	179438970	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179438970C>T	uc010zfg.1	-	275	64409	c.64185G>A	c.(64183-64185)AAG>AAA	p.K21395K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K15090K|TTN_uc010zfi.1_Silent_p.K15023K|TTN_uc010zfj.1_Silent_p.K14898K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22322							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAGGTCTCTCTTTTCAACGA	0.398													8	16					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179454956	179454956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179454956C>T	uc010zfg.1	-	253	54016	c.53792G>A	c.(53791-53793)CGA>CAA	p.R17931Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R11626Q|TTN_uc010zfi.1_Missense_Mutation_p.R11559Q|TTN_uc010zfj.1_Missense_Mutation_p.R11434Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18858							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCTTTGACTCGAGCTAGAAT	0.438													41	101					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179456010	179456010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179456010C>T	uc010zfg.1	-	253	52962	c.52738G>A	c.(52738-52740)GAA>AAA	p.E17580K	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E11275K|TTN_uc010zfi.1_Missense_Mutation_p.E11208K|TTN_uc010zfj.1_Missense_Mutation_p.E11083K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18507							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTGATATTCCCCAGTGTCT	0.428													147	230					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179458032	179458032	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179458032G>C	uc010zfg.1	-	248	51423	c.51199C>G	c.(51199-51201)CCA>GCA	p.P17067A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P10762A|TTN_uc010zfi.1_Missense_Mutation_p.P10695A|TTN_uc010zfj.1_Missense_Mutation_p.P10570A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17994							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTAGTGTATGGATGAATAGGA	0.408													45	92					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179469494	179469494	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179469494T>C	uc010zfg.1	-	230	46842	c.46618A>G	c.(46618-46620)AGT>GGT	p.S15540G	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S9235G|TTN_uc010zfi.1_Missense_Mutation_p.S9168G|TTN_uc010zfj.1_Missense_Mutation_p.S9043G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16467							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTCCTACTTGCATCACGT	0.388													20	73					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179477511	179477511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179477511C>T	uc010zfg.1	-	214	42457	c.42233G>A	c.(42232-42234)CGG>CAG	p.R14078Q	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R7773Q|TTN_uc010zfi.1_Missense_Mutation_p.R7706Q|TTN_uc010zfj.1_Missense_Mutation_p.R7581Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15005							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGCTTCTCCCGGCAAAGCAC	0.433													5	19					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179480173	179480173	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179480173G>A	uc010zfg.1	-	208	41019	c.40795C>T	c.(40795-40797)CGA>TGA	p.R13599*	TTN_uc010zfh.1_Nonsense_Mutation_p.R7294*|TTN_uc010zfi.1_Nonsense_Mutation_p.R7227*|TTN_uc010zfj.1_Nonsense_Mutation_p.R7102*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14526							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGCTGTTCGATCTCTCCAT	0.433													79	186					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179498037	179498037	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179498037C>T	uc010zfg.1	-	182	35483	c.35259G>A	c.(35257-35259)GTG>GTA	p.V11753V	TTN_uc010zfh.1_Silent_p.V5448V|TTN_uc010zfi.1_Silent_p.V5381V|TTN_uc010zfj.1_Silent_p.V5256V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12680							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGGCTTTTCCACTTTTATTA	0.398													36	99					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179516193	179516193	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179516193G>A	uc010zfg.1	-	161	32456	c.32232C>T	c.(32230-32232)GCC>GCT	p.A10744A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11671							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGCAGGTGGGGCTTCTGGCT	0.473													18	35					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179579180	179579180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179579180C>T	uc010zfg.1	-	88	22813	c.22589G>A	c.(22588-22590)GGA>GAA	p.G7530E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4191E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8457							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AACGATTTCTCCCTTATCTTT	0.408													9	27					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179582062	179582062	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179582062G>A	uc010zfg.1	-	85	21891	c.21667C>T	c.(21667-21669)CTT>TTT	p.L7223F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L3884F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8150							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCAAGAGCAAGATCTACTGAT	0.418													15	33					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179584835	179584835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179584835G>A	uc010zfg.1	-	78	20026	c.19802C>T	c.(19801-19803)TCA>TTA	p.S6601L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S3262L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7528							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCAATGAATGAAATCCTGGT	0.428													22	70					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179593106	179593106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179593106G>A	uc010zfg.1	-	64	15937	c.15713C>T	c.(15712-15714)TCA>TTA	p.S5238L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.S1899L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6165							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGGTGAATGATGGAGGAAT	0.368													6	11					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179594433	179594433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179594433C>T	uc010zfg.1	-	60	15039	c.14815G>A	c.(14815-14817)GAC>AAC	p.D4939N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1600N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5866							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGCCTGCGTCATTTCGAGCT	0.458													58	125					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179604483	179604483	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179604483G>A	uc010zfh.1	-	46	13188	c.12964C>T	c.(12964-12966)CCT>TCT	p.P4322S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P4255S|TTN_uc010zfj.1_Missense_Mutation_p.P4130S|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAATTCTAGGACCCTCAGCT	0.393													67	181					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179605809	179605809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179605809C>T	uc010zfh.1	-	46	11862	c.11638G>A	c.(11638-11640)GAT>AAT	p.D3880N	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.D3813N|TTN_uc010zfj.1_Missense_Mutation_p.D3688N|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTGGAAAATCCTCAGGAGCC	0.498													76	128					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179613203	179613203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179613203C>T	uc002unb.2	-	46	14148	c.13924G>A	c.(13924-13926)GAA>AAA	p.E4642K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	756							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAATGTATTTCCTGCTGTTCC	0.368													28	90					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179613212	179613212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179613212C>T	uc002unb.2	-	46	14139	c.13915G>A	c.(13915-13917)GAA>AAA	p.E4639K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCTGCTGTTCCCTAGTTTCT	0.373													31	98					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179621343	179621343	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179621343G>A	uc010zfh.1	-	44	10571	c.10347C>T	c.(10345-10347)TCC>TCT	p.S3449S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGTGTGGATGGAACTTTGAG	0.383													19	55					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179623868	179623868	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179623868C>T	uc010zfg.1	-	44	10370	c.10146G>A	c.(10144-10146)AAG>AAA	p.K3382K	TTN_uc010zfh.1_Silent_p.K3336K|TTN_uc010zfi.1_Silent_p.K3336K|TTN_uc010zfj.1_Silent_p.K3336K|TTN_uc002umz.1_Silent_p.K43K|TTN_uc002unb.2_Silent_p.K3382K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4325							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCTTGATTTTCTTGTCTTTGC	0.373													32	51					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179631247	179631247	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179631247G>A	uc010zfg.1	-	41	9788	c.9564C>T	c.(9562-9564)TTC>TTT	p.F3188F	TTN_uc010zfh.1_Silent_p.F3142F|TTN_uc010zfi.1_Silent_p.F3142F|TTN_uc010zfj.1_Silent_p.F3142F|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Silent_p.F3188F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3188							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGAACTTGGAAATTGATTT	0.413													16	50					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179734016	179734016	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:179734016A>G	uc002unf.1	-	5	554	c.497T>C	c.(496-498)GTT>GCT	p.V166A		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	166							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			AATGTACTGAACCTCATCATT	0.323													4	21					0	0	1	0	0
ITGA4	3676	broad.mit.edu	37	2	182398999	182398999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:182398999G>A	uc002unu.2	+	26	3548	c.2785G>A	c.(2785-2787)GAT>AAT	p.D929N	ITGA4_uc002unv.2_Missense_Mutation_p.D174N	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	929	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TATTAAACAGGATGAGACTTC	0.358													9	23					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802848	185802848	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:185802848G>A	uc002uph.2	+	4	3319	c.2725G>A	c.(2725-2727)GAT>AAT	p.D909N		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	909						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TGAATTGTCAGATGTTTCCAA	0.413													30	50					0	0	1	0	0
ITGAV	3685	broad.mit.edu	37	2	187500840	187500840	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:187500840C>T	uc002upq.2	+	7	939	c.663C>T	c.(661-663)ATC>ATT	p.I221I	ITGAV_uc010frs.2_Silent_p.I185I|ITGAV_uc010zfv.1_Silent_p.I175I	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	221	FG-GAP 3.|Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		TGGCAGAAATCGTATCTAAAT	0.343													19	52					0	0	1	0	0
ITGAV	3685	broad.mit.edu	37	2	187506153	187506153	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:187506153C>T	uc002upq.2	+	12	1273	c.997C>T	c.(997-999)CGT>TGT	p.R333C	ITGAV_uc010frs.2_Missense_Mutation_p.R297C|ITGAV_uc010zfv.1_Missense_Mutation_p.R287C	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	333	FG-GAP 5.|Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		CTTCATGGATCGTGGCTCTGA	0.448													46	89					0	0	1	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187698694	187698694	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:187698694G>A	uc002upu.1	-	6	847	c.807C>T	c.(805-807)TCC>TCT	p.S269S		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	269	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TAAACGTGTGGGAAAGATGGC	0.358													21	39					0	0	1	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187712507	187712507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:187712507G>A	uc002upu.1	-	2	221	c.181C>T	c.(181-183)CCT>TCT	p.P61S		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	61	SWIM-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CAAACGTGAGGATTTCCTAGA	0.348													19	54					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189849971	189849971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:189849971C>T	uc002uqj.1	+	3	448	c.331C>T	c.(331-333)CCA>TCA	p.P111S		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	111					axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CAAGGGAGATCCAGTAAGTAA	0.338													34	57					0	0	1	0	0
ANKAR	150709	broad.mit.edu	37	2	190569920	190569920	+	Missense_Mutation	SNP	C	T	T	rs150297860		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:190569920C>T	uc002uqw.1	+	7	1667	c.1667C>T	c.(1666-1668)CCT>CTT	p.P556L	ANKAR_uc002uqu.2_RNA	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	627	ANK 3.					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			AGGAAGGATCCTAGTTTGCTA	0.393													58	96					0	0	1	0	0
ANKAR	150709	broad.mit.edu	37	2	190597928	190597928	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:190597928C>T	uc002uqw.1	+	16	3183	c.3183C>T	c.(3181-3183)GTC>GTT	p.V1061V	ANKAR_uc002uqu.2_RNA|ANKAR_uc002uqx.1_Intron|ANKAR_uc002uqy.1_Silent_p.V228V	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	1132						integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			ATGCTGATGTCCTTTATCTTC	0.323													13	28					0	0	1	0	0
STAT4	6775	broad.mit.edu	37	2	191941042	191941042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:191941042G>A	uc002usm.1	-	4	537	c.283C>T	c.(283-285)CAT>TAT	p.H95Y	STAT4_uc002usn.1_Missense_Mutation_p.H95Y|STAT4_uc002uso.2_Missense_Mutation_p.H95Y|STAT4_uc002usp.3_Missense_Mutation_p.H95Y	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	95					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GGATTTCCATGAAATTTTCCC	0.328													19	50					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196602738	196602738	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:196602738C>T	uc002utj.3	-	65	12083	c.11982G>A	c.(11980-11982)ACG>ACA	p.T3994T	DNAH7_uc002uti.3_Silent_p.T477T	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3994					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCACAAAATTCGTGGAATGGC	0.453													36	52					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196749452	196749452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:196749452G>A	uc002utj.3	-	35	5721	c.5620C>T	c.(5620-5622)CGA>TGA	p.R1874*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1874					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATTAGTTCTCGAAGAATCTTA	0.383													27	42					0	0	1	0	0
DNAH7	56171	broad.mit.edu	37	2	196837163	196837163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:196837163C>T	uc002utj.3	-	16	1962	c.1861G>A	c.(1861-1863)GAT>AAT	p.D621N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	621	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCAATCATATCAGTTACCTCC	0.408													29	67					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197118738	197118738	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:197118738C>T	uc002utm.1	-	19	3618	c.3435G>A	c.(3433-3435)GAG>GAA	p.E1145E	HECW2_uc002utl.1_Silent_p.E789E	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	1145					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						ACGACATTATCTCTTCTTCAA	0.493													33	65					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197189747	197189747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:197189747G>A	uc002utm.1	-	6	881	c.698C>T	c.(697-699)TCT>TTT	p.S233F	HECW2_uc002utl.1_5'UTR	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	233	C2.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GATGATAGTAGACCGTCTCTC	0.512													81	185					0	0	1	0	0
CCDC150	284992	broad.mit.edu	37	2	197594822	197594822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:197594822G>A	uc002utp.1	+	25	3097	c.2962G>A	c.(2962-2964)GAG>AAG	p.E988K	CCDC150_uc010zgs.1_Missense_Mutation_p.E635K	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	988	Potential.										0						AATAAGGCAGGAGCTAGAGAA	0.458													9	23					0	0	1	0	0
CLK1	1195	broad.mit.edu	37	2	201724928	201724928	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:201724928C>G	uc002uwe.2	-	4	582	c.401G>C	c.(400-402)CGA>CCA	p.R134P	CLK1_uc002uwd.2_5'Flank|CLK1_uc010zhi.1_Missense_Mutation_p.R176P|CLK1_uc002uwf.2_Intron|CLK1_uc002uwg.2_5'UTR|CLK1_uc010fsv.2_RNA	NM_004071	NP_004062	P49759	CLK1_HUMAN	CDC-like kinase 1 isoform 1	134					cell proliferation	nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			pancreas(2)	2						TCTTTTCCTTCGGTGACTCTT	0.458													40	104					0	0	1	0	0
NDUFB3	4709	broad.mit.edu	37	2	201950226	201950226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:201950226C>T	uc002uwx.3	+	3	508	c.185C>T	c.(184-186)TCC>TTC	p.S62F		NM_002491	NP_002482	O43676	NDUB3_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	62					mitochondrial electron transport, NADH to ubiquinone|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	AAGAGTGTTTCCTTTTCTGAT	0.353													24	37					0	0	1	0	0
CASP10	843	broad.mit.edu	37	2	202073875	202073875	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:202073875C>T	uc002uxl.1	+	9	1423	c.1005C>T	c.(1003-1005)GTC>GTT	p.V335V	CASP10_uc002uxj.1_Silent_p.V335V|CASP10_uc002uxk.1_Silent_p.V292V|CASP10_uc010fta.1_Silent_p.V268V|CASP10_uc002uxm.1_Silent_p.V292V|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	335					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						TGGAGATGGTCCTGCAGAAGC	0.463													39	129					0	0	1	0	0
ALS2	57679	broad.mit.edu	37	2	202622465	202622465	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:202622465T>C	uc002uyo.2	-	5	1487	c.1131A>G	c.(1129-1131)GCA>GCG	p.A377A	ALS2_uc002uyp.3_Silent_p.A377A|ALS2_uc002uyq.2_Silent_p.A377A	NM_020919	NP_065970	Q96Q42	ALS2_HUMAN	alsin isoform 1	377					cell death|endosome organization|positive regulation of Rac GTPase activity|regulation of endosome size	centrosome|cytosol|early endosome|growth cone|lamellipodium|protein complex|ruffle	protein homodimerization activity|protein serine/threonine kinase activator activity|Rab GTPase binding|Rab guanyl-nucleotide exchange factor activity|Rac guanyl-nucleotide exchange factor activity|Ran guanyl-nucleotide exchange factor activity			skin(5)|lung(1)|breast(1)	7						GATTAGGAATTGCTTCTTCTA	0.398													23	47					0	0	1	0	0
FAM117B	150864	broad.mit.edu	37	2	203630259	203630259	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:203630259C>T	uc010zhx.1	+	8	1552	c.1542C>T	c.(1540-1542)CTC>CTT	p.L514L		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	514										ovary(1)	1						CTTTCTGCCTCGTCAGCATCC	0.493													51	123					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	206023510	206023510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:206023510C>T	uc002var.1	+	11	1706	c.1499C>T	c.(1498-1500)CCC>CTC	p.P500L	PARD3B_uc010fub.1_Missense_Mutation_p.P500L|PARD3B_uc002vao.1_Missense_Mutation_p.P500L|PARD3B_uc002vap.1_Intron|PARD3B_uc002vaq.1_Missense_Mutation_p.P500L	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	500	PDZ 3.				cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		TTTGAGATCCCCCTGAATGAT	0.463													56	113					0	0	1	0	0
INO80D	54891	broad.mit.edu	37	2	206921493	206921493	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:206921493G>A	uc002vaz.3	-	4	798	c.393C>T	c.(391-393)CTC>CTT	p.L131L		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	131					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						CAGGTGGAGAGAGGGACATTC	0.527													5	15					0	0	1	0	0
GPR1	2825	broad.mit.edu	37	2	207041246	207041246	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:207041246A>C	uc002vbl.3	-	3	1112	c.726T>G	c.(724-726)AGT>AGG	p.S242R	GPR1_uc010fue.2_Missense_Mutation_p.S242R|GPR1_uc010fuf.2_Missense_Mutation_p.S242R	NM_005279	NP_005270	P46091	GPR1_HUMAN	G protein-coupled receptor 1	242	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Lung NSC(271;7.93e-06)|Renal(323;0.000147)|Hepatocellular(293;0.000888)		UCEC - Uterine corpus endometrioid carcinoma (47;0.000241)|Epithelial(149;1.91e-37)|STAD - Stomach adenocarcinoma(1183;0.00178)|Lung(261;0.111)|LUSC - Lung squamous cell carcinoma(261;0.184)		AGAAATGCCTACTGGAGATCA	0.428													16	37					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207161985	207161985	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:207161985C>T	uc002vbp.2	+	4	326	c.76C>T	c.(76-78)CAG>TAG	p.Q26*		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	26	DBF4-type.						nucleic acid binding|zinc ion binding			ovary(3)	3						GTTCAGTGCTCAGCACAGGAG	0.279													11	29					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170315	207170315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:207170315G>A	uc002vbp.2	+	5	1313	c.1063G>A	c.(1063-1065)GAA>AAA	p.E355K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	355							nucleic acid binding|zinc ion binding			ovary(3)	3						AGCCTTTTGGGAACAGAAGTG	0.388													11	36					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174413	207174413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:207174413C>T	uc002vbp.2	+	5	5411	c.5161C>T	c.(5161-5163)CAT>TAT	p.H1721Y		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1721							nucleic acid binding|zinc ion binding			ovary(3)	3						GTCAGCGCTCCATCGAAGGGC	0.453													9	24					0	0	1	0	0
ADAM23	8745	broad.mit.edu	37	2	207345994	207345994	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:207345994C>T	uc002vbq.2	+	3	694	c.471C>T	c.(469-471)GCC>GCT	p.A157A	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	157					cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		AGATTGAAGCCTTCGGCTCCA	0.368													18	33					0	0	1	0	0
ADAM23	8745	broad.mit.edu	37	2	207431961	207431961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:207431961G>A	uc002vbq.2	+	15	1632	c.1409G>A	c.(1408-1410)CGA>CAA	p.R470Q	ADAM23_uc010ziv.1_RNA	NM_003812	NP_003803	O75077	ADA23_HUMAN	ADAM metallopeptidase domain 23 preproprotein	470	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|proteolysis	extracellular region|integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)	3				LUSC - Lung squamous cell carcinoma(261;0.0961)|Lung(261;0.182)|Epithelial(149;0.205)		TCCCATTCTCGAAAATTTTCA	0.358													30	64					0	0	1	0	0
MDH1B	130752	broad.mit.edu	37	2	207604347	207604347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:207604347C>T	uc002vbs.2	-	11	1553	c.1498G>A	c.(1498-1500)GAA>AAA	p.E500K	MDH1B_uc010ziw.1_RNA|MDH1B_uc010fui.2_Missense_Mutation_p.E499K|MDH1B_uc010fuj.2_Missense_Mutation_p.E402K|MDH1B_uc002vbt.2_RNA	NM_001039845	NP_001034934	Q5I0G3	MDH1B_HUMAN	malate dehydrogenase 1B, NAD (soluble)	500					carbohydrate metabolic process|malate metabolic process|tricarboxylic acid cycle		binding|malate dehydrogenase activity			ovary(3)|kidney(1)	4				LUSC - Lung squamous cell carcinoma(261;0.0763)|Epithelial(149;0.131)|Lung(261;0.145)		TGTGGCTTTTCAAAGGTGGTT	0.343													17	26					0	0	1	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208866170	208866170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:208866170G>A	uc002vcl.2	-	2	684	c.194C>T	c.(193-195)TCC>TTC	p.S65F	PLEKHM3_uc002vcm.2_Missense_Mutation_p.S65F	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	65					intracellular signal transduction		metal ion binding			ovary(1)	1						CTTGCCCAGGGAGGTGACATT	0.498													36	57					0	0	1	0	0
CRYGC	1420	broad.mit.edu	37	2	208994365	208994365	+	Missense_Mutation	SNP	C	T	T	rs145041511		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:208994365C>T	uc002vco.3	-	2	90	c.52G>A	c.(52-54)GAA>AAA	p.E18K		NM_020989	NP_066269	P07315	CRGC_HUMAN	crystallin, gamma C	18	Beta/gamma crystallin 'Greek key' 1.				visual perception	cytoplasm|nucleus	protein binding|structural constituent of eye lens				0				LUSC - Lung squamous cell carcinoma(261;0.0703)|Epithelial(149;0.0858)|Lung(261;0.133)		GTGGTGGTTTCGTAGCTGCGG	0.522													72	169					0	0	1	0	0
PTH2R	5746	broad.mit.edu	37	2	209302275	209302276	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:209302275_209302276CC>AT	uc002vdb.2	+	3	405_406	c.192_193CC>AT	c.(190-195)TTCCCT>TTATCT	p.64_65FP>LS	PTH2R_uc010zjb.1_Missense_Mutation_p.75_76FP>LS	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	64_65	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GTAATTGTTTCCCTGAATGGGA	0.337													17	44					0	0	1	0	0
PTH2R	5746	broad.mit.edu	37	2	209302320	209302320	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:209302320G>A	uc002vdb.2	+	3	450	c.237G>A	c.(235-237)GGG>GGA	p.G79G	PTH2R_uc010zjb.1_Silent_p.G90G	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	79	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		GAACAGTGGGGAAAATATCGG	0.313													27	45					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210557829	210557829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:210557829C>T	uc002vde.1	+	7	1183	c.935C>T	c.(934-936)CCC>CTC	p.P312L	MAP2_uc002vdc.1_Missense_Mutation_p.P312L|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Missense_Mutation_p.P308L	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	312					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TTTGATTCTCCCATGCCAAGT	0.448													25	44					0	0	1	0	0
MAP2	4133	broad.mit.edu	37	2	210559987	210559987	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:210559987C>T	uc002vde.1	+	7	3341	c.3093C>T	c.(3091-3093)TCC>TCT	p.S1031S	MAP2_uc002vdc.1_Silent_p.S1031S|MAP2_uc002vdd.1_Intron|MAP2_uc002vdf.1_Intron|MAP2_uc002vdg.1_Intron|MAP2_uc002vdh.1_Intron|MAP2_uc002vdi.1_Silent_p.S1027S	NM_002374	NP_002365	P11137	MAP2_HUMAN	microtubule-associated protein 2 isoform 1	1031					central nervous system neuron development|dendrite morphogenesis|negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	beta-dystroglycan binding|calmodulin binding|structural molecule activity			ovary(9)|upper_aerodigestive_tract(2)|large_intestine(2)|pancreas(2)|central_nervous_system(1)|skin(1)	17		Hepatocellular(293;0.137)|Lung NSC(271;0.163)|Renal(323;0.202)		UCEC - Uterine corpus endometrioid carcinoma (47;6.64e-05)|Epithelial(149;3.12e-100)|all cancers(144;6.88e-91)|Lung(261;0.0624)|LUSC - Lung squamous cell carcinoma(261;0.0662)|STAD - Stomach adenocarcinoma(1183;0.18)	Estramustine(DB01196)	TAGAACCATCCAAAAAGGTGG	0.428													42	83					0	0	1	0	0
ERBB4	2066	broad.mit.edu	37	2	212426716	212426716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:212426716G>A	uc002veg.1	-	20	2497	c.2399C>T	c.(2398-2400)CCC>CTC	p.P800L	ERBB4_uc002veh.1_Missense_Mutation_p.P800L|ERBB4_uc010zji.1_Missense_Mutation_p.P790L|ERBB4_uc010zjj.1_Missense_Mutation_p.P790L|ERBB4_uc010fut.1_Missense_Mutation_p.P800L	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	800	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GCAGCCATGGGGCATAAGTTG	0.507										TSP Lung(8;0.080)			46	94					0	0	1	0	0
MIR548F-2	100302154	broad.mit.edu	37	2	213291031	213291031	+	RNA	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:213291031T>A	hsa-mir-548f-2|MI0006375	-			c.54T>A			ERBB4_uc002veg.1_Intron|ERBB4_uc002veh.1_Intron|ERBB4_uc010zji.1_Intron|ERBB4_uc010zjj.1_Intron|ERBB4_uc010fut.1_Intron																	0						gtttttgccattaaaagtaat	0.164													13	18					0	0	1	0	0
IKZF2	22807	broad.mit.edu	37	2	213872101	213872102	+	Nonsense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:213872101_213872102CC>AT	uc002vem.2	-	8	1732_1733	c.1563_1564GG>AT	c.(1561-1566)GGGGAG>GGATAG	p.E522*	IKZF2_uc010fuu.2_Nonsense_Mutation_p.E377*|IKZF2_uc002vej.2_Nonsense_Mutation_p.E469*|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Nonsense_Mutation_p.E448*|IKZF2_uc002vel.2_Nonsense_Mutation_p.E443*|IKZF2_uc010fuw.2_Nonsense_Mutation_p.E296*|IKZF2_uc010fux.2_Nonsense_Mutation_p.E296*|IKZF2_uc010fuy.2_Nonsense_Mutation_p.E450*|IKZF2_uc002ven.2_Nonsense_Mutation_p.E496*|IKZF2_uc002vei.2_Nonsense_Mutation_p.E300*	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	522	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		AATGTGTGCTCCCCTCGAACAA	0.48													32	51					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215862524	215862524	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:215862524G>A	uc002vew.2	-	23	3409	c.3189C>T	c.(3187-3189)ACC>ACT	p.T1063T	ABCA12_uc002vev.2_Silent_p.T745T|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1063					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AAGAGACACTGGTTAGGAAGC	0.363													14	37					0	0	1	0	0
TMEM169	92691	broad.mit.edu	37	2	216960822	216960822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:216960822G>A	uc010zjr.1	+	3	462	c.136G>A	c.(136-138)GAG>AAG	p.E46K	TMEM169_uc010zjs.1_Missense_Mutation_p.E46K|TMEM169_uc002vfw.2_Missense_Mutation_p.E46K|TMEM169_uc002vfv.3_Missense_Mutation_p.E46K	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	46	Extracellular (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GAAGAGGAAAGAGTCACGCCC	0.552													13	16					0	0	1	0	0
CXCR2	3579	broad.mit.edu	37	2	219000408	219000408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:219000408C>T	uc002vgz.1	+	4	1109	c.884C>T	c.(883-885)GCT>GTT	p.A295V	CXCR2_uc002vha.1_Missense_Mutation_p.A295V|CXCR2_uc002vhb.1_Missense_Mutation_p.A295V	NM_001557	NP_001548	P25025	CXCR2_HUMAN	interleukin 8 receptor beta	295	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cellular defense response|dendritic cell chemotaxis|inflammatory response|neutrophil activation|neutrophil chemotaxis|positive regulation of cell proliferation	cell surface|integral to plasma membrane|mast cell granule	interleukin-8 receptor activity			lung(1)|breast(1)	2						ATCGACCGGGCTCTGGATGCC	0.587													31	43					0	0	1	0	0
PNKD	25953	broad.mit.edu	37	2	219204784	219204784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:219204784G>A	uc002vhn.2	+	4	529	c.385G>A	c.(385-387)GAC>AAC	p.D129N	PNKD_uc002vhq.2_Missense_Mutation_p.D105N	NM_015488	NP_056303	Q8N490	PNKD_HUMAN	myofibrillogenesis regulator 1 isoform 1	129						membrane|mitochondrion|nucleus	hydroxyacylglutathione hydrolase activity|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;7.33e-07)|all cancers(144;0.000133)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGTCCTCTCGGACAACTACAG	0.647													47	85					0	0	1	0	0
WNT10A	80326	broad.mit.edu	37	2	219757847	219757847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:219757847G>A	uc002vjd.1	+	4	1571	c.1108G>A	c.(1108-1110)GAT>AAT	p.D370N		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	370					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CGCCGGCTCGGATGGCTGCGG	0.687													10	9					0	0	1	0	0
ATG9A	79065	broad.mit.edu	37	2	220089166	220089166	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:220089166G>A	uc002vke.1	-	8	1113	c.927C>T	c.(925-927)ATC>ATT	p.I309I	ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Silent_p.I309I	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	309	Helical; (Potential).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGCATAGAGGATTTGCCATA	0.622													11	22					0	0	1	0	0
ANKZF1	55139	broad.mit.edu	37	2	220098072	220098072	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:220098072C>T	uc002vkg.2	+	7	910	c.736C>T	c.(736-738)CAG>TAG	p.Q246*	ANKZF1_uc010zkv.1_Nonsense_Mutation_p.Q190*|ANKZF1_uc010zkw.1_Nonsense_Mutation_p.Q36*|ANKZF1_uc002vkh.2_Nonsense_Mutation_p.Q36*|ANKZF1_uc002vki.2_Nonsense_Mutation_p.Q246*|ANKZF1_uc002vkj.1_Nonsense_Mutation_p.Q234*	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing	246						intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGGCACAGCCCAGGGGCTTCG	0.542													41	75					0	0	1	0	0
EPHA4	2043	broad.mit.edu	37	2	222428965	222428965	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:222428965G>A	uc002vmq.2	-	3	351	c.309C>T	c.(307-309)TTC>TTT	p.F103F	EPHA4_uc002vmr.2_Silent_p.F103F|EPHA4_uc010zlm.1_Silent_p.F44F|EPHA4_uc010zln.1_Silent_p.F103F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	103	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCCTCAAGGTGAATTTAATCT	0.473													38	96					0	0	1	0	0
AP1S3	130340	broad.mit.edu	37	2	224629914	224629914	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:224629914G>A	uc010fwx.1	-	4	597	c.445C>T	c.(445-447)CAA>TAA	p.Q149*	AP1S3_uc002vnn.2_Intron|AP1S3_uc010fww.2_Intron|AP1S3_uc002vno.2_Intron	NM_001039569	NP_001034658	Q96PC3	AP1S3_HUMAN	adaptor-related protein complex 1, sigma 3	149					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane coat	protein transporter activity				0		Renal(207;0.0112)|Lung NSC(271;0.0186)|all_lung(227;0.0272)		Epithelial(121;7.6e-10)|all cancers(144;3.62e-07)|Lung(261;0.0086)|LUSC - Lung squamous cell carcinoma(224;0.00902)		CCCATGGTTTGGGAAACCGTA	0.239													25	42					0	0	1	0	0
DOCK10	55619	broad.mit.edu	37	2	225727399	225727399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:225727399G>A	uc010fwz.1	-	14	1906	c.1667C>T	c.(1666-1668)CCT>CTT	p.P556L	DOCK10_uc002vob.2_Missense_Mutation_p.P550L|DOCK10_uc002vod.1_Missense_Mutation_p.P556L	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	556							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		CCAAGCAAAAGGCATACGGTA	0.338													23	30					0	0	1	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446812	226446812	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:226446812T>C	uc002voe.2	+	4	854	c.679T>C	c.(679-681)TCC>CCC	p.S227P	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	227										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GCGGGACTCCTCCTTGTCCCA	0.582													91	122					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228118856	228118856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:228118856G>A	uc002vom.1	+	14	956	c.794G>A	c.(793-795)GGA>GAA	p.G265E	COL4A3_uc002von.1_Missense_Mutation_p.G265E|COL4A3_uc002voo.1_Missense_Mutation_p.G265E|COL4A3_uc002vop.1_Missense_Mutation_p.G265E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	265	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGAGACAAGGGAGCAATGGGC	0.423													29	66					0	0	1	0	0
COL4A3	1285	broad.mit.edu	37	2	228145159	228145159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:228145159G>A	uc002vom.1	+	30	2389	c.2227G>A	c.(2227-2229)GAA>AAA	p.E743K	COL4A3_uc002von.1_Missense_Mutation_p.E743K|COL4A3_uc002voo.1_Missense_Mutation_p.E743K|COL4A3_uc002vop.1_Missense_Mutation_p.E743K|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	743	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GCTGTAGGGAGAACCAGCAGT	0.468													24	54					0	0	1	0	0
SLC19A3	80704	broad.mit.edu	37	2	228563864	228563864	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:228563864G>A	uc002vpi.2	-	3	656	c.567C>T	c.(565-567)TTC>TTT	p.F189F	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Silent_p.F185F	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	189	Helical; (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	GCATTGGTAGGAAAAGTGAGA	0.443													23	40					0	0	1	0	0
DNER	92737	broad.mit.edu	37	2	230450637	230450637	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:230450637G>A	uc002vpv.2	-	4	931	c.784C>T	c.(784-786)CAG>TAG	p.Q262*	DNER_uc010zly.1_5'UTR	NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	262	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		CCTGAAGCCTGAAGGGGGGTC	0.522													26	67					0	0	1	0	0
FBXO36	130888	broad.mit.edu	37	2	230861589	230861589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:230861589G>A	uc002vqa.2	+	3	351	c.328G>A	c.(328-330)GAT>AAT	p.D110N	FBXO36_uc002vqb.2_Missense_Mutation_p.D79N|FBXO36_uc010fxi.1_Missense_Mutation_p.D110N|FBXO36_uc002vqc.2_RNA	NM_174899	NP_777559	Q8NEA4	FBX36_HUMAN	F-box protein 36	110	F-box.									ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0179)|Lung NSC(271;0.0804)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;7.56e-14)|all cancers(144;7.74e-11)|Lung(119;0.00488)|LUSC - Lung squamous cell carcinoma(224;0.008)		TTCTTATCTGGATCTTGAAGA	0.353													65	108					0	0	1	0	0
B3GNT7	93010	broad.mit.edu	37	2	232263129	232263129	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:232263129C>T	uc002vrs.2	+	2	879	c.699C>T	c.(697-699)GTC>GTT	p.V233V		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	233	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		GCCCCCACGTCCCCTTCATTT	0.562													49	92					0	0	1	0	0
COPS7B	64708	broad.mit.edu	37	2	232660851	232660851	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:232660851G>A	uc002vsg.1	+	5	466	c.363G>A	c.(361-363)GAG>GAA	p.E121E	COPS7B_uc010fxy.1_Silent_p.E87E|COPS7B_uc002vsh.1_Silent_p.E121E|COPS7B_uc002vsi.1_Silent_p.E14E|COPS7B_uc002vsj.1_RNA|COPS7B_uc002vsk.1_Silent_p.E14E	NM_022730	NP_073567	Q9H9Q2	CSN7B_HUMAN	COP9 constitutive photomorphogenic homolog	121	PCI.				cullin deneddylation	cytoplasm|signalosome				ovary(1)|liver(1)|skin(1)	3		all_hematologic(139;0.0123)|Acute lymphoblastic leukemia(138;0.0182)|Renal(207;0.025)		Epithelial(121;1.36e-12)|BRCA - Breast invasive adenocarcinoma(100;0.00136)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0142)		AAGACCTGGAGATGCGGAATC	0.483													23	48					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	233990529	233990529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:233990529G>A	uc010zmo.1	+	4	577	c.424G>A	c.(424-426)GAG>AAG	p.E142K	INPP5D_uc010zmp.1_Missense_Mutation_p.E141K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	142					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TGAGGCCAAGGAGGTTCCTTT	0.582													17	16					0	0	1	0	0
UGT1A7	54577	broad.mit.edu	37	2	234590918	234590918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:234590918C>T	uc002vut.2	+	1	335	c.335C>T	c.(334-336)TCA>TTA	p.S112L	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.S112L	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	112					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		TTAACAAGTTCATCCAATGGT	0.398													20	85					0	0	1	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627728	234627728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:234627728G>A	uc002vux.2	+	1	291	c.262G>A	c.(262-264)GAA>AAA	p.E88K	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Missense_Mutation_p.E88K	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	88					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	GACCCAGAAGGAATTTGATCG	0.453													22	41					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234835194	234835194	+	Silent	SNP	G	A	A	rs149800225	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:234835194G>A	uc002vvh.2	+	2	52	c.12G>A	c.(10-12)CGG>CGA	p.R4R	TRPM8_uc010fyj.2_5'UTR	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	4	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	TGTCCTTTCGGGCAGCCAGGC	0.527													37	71					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234854600	234854600	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:234854600G>T	uc002vvh.2	+	7	840	c.800G>T	c.(799-801)TGT>TTT	p.C267F	TRPM8_uc010fyj.2_5'UTR	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	267	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	GACAATGGCTGTCATGGACAT	0.468													48	99					1.51926e-22	1.5476e-22	1	1	0
AGAP1	116987	broad.mit.edu	37	2	236817381	236817381	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:236817381G>A	uc002vvs.2	+	11	1751	c.1156_splice	c.e11-1	p.D386_splice	AGAP1_uc002vvt.2_Splice_Site_p.D386_splice	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1						protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						ATTTTCAACAGGATTACATGC	0.428													8	41					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237240221	237240221	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:237240221A>G	uc002vvz.1	-	18	2336	c.2154T>C	c.(2152-2154)ATT>ATC	p.I718I	IQCA1_uc002vwb.2_Silent_p.I726I|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Silent_p.I677I	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	718							ATP binding			ovary(1)	1						CATTGCGTTCAATGATTTGCT	0.483													7	23					0	0	1	0	0
IQCA1	79781	broad.mit.edu	37	2	237272521	237272521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:237272521C>T	uc002vvz.1	-	15	1953	c.1771G>A	c.(1771-1773)GAA>AAA	p.E591K	IQCA1_uc002vwb.2_Missense_Mutation_p.E599K|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.E550K	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	591							ATP binding			ovary(1)	1						GCTCCCGTTTCGGTGCAGATG	0.512													45	92					0	0	1	0	0
CXCR7	57007	broad.mit.edu	37	2	237489957	237489957	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:237489957C>T	uc010fyq.2	+	3	1079	c.849C>T	c.(847-849)ATC>ATT	p.I283I	CXCR7_uc002vwd.2_Silent_p.I283I	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	283	Extracellular (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		TGCACTACATCCCTTTCACCT	0.602													58	139					0	0	1	0	0
COL6A3	1293	broad.mit.edu	37	2	238249538	238249538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:238249538G>A	uc002vwl.2	-	38	8306	c.8021C>T	c.(8020-8022)TCC>TTC	p.S2674F	COL6A3_uc002vwo.2_Missense_Mutation_p.S2468F|COL6A3_uc010znj.1_Missense_Mutation_p.S2067F|COL6A3_uc002vwj.2_Missense_Mutation_p.S55F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2674	VWFA 12.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ATTGTCCACGGACTCAGAGGG	0.572													22	49					0	0	1	0	0
ESPNL	339768	broad.mit.edu	37	2	239016552	239016552	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:239016552A>G	uc002vxq.3	+	4	903	c.793A>G	c.(793-795)ATC>GTC	p.I265V	ESPNL_uc010fyw.2_Missense_Mutation_p.I5V	NM_194312	NP_919288	Q6ZVH7	ESPNL_HUMAN	espin-like	265	ANK 8.									pancreas(1)	1		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		GGGTACCCCCATCCTGAGAGA	0.622													11	15					0	0	1	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239307550	239307550	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:239307550C>T	uc002vye.2	+	17	2185	c.2066C>T	c.(2065-2067)TCG>TTG	p.S689L	TRAF3IP1_uc002vyf.2_Missense_Mutation_p.S623L	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	689	DISC1-interaction domain.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		AATTTGACTTCGAGAAGGTGA	0.358													26	35					0	0	1	0	0
OTOS	150677	broad.mit.edu	37	2	241078632	241078632	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:241078632G>A	uc002vyv.2	-	4	380	c.225C>T	c.(223-225)CCC>CCT	p.P75P	MYEOV2_uc002vyu.1_5'Flank|MYEOV2_uc010zof.1_5'Flank	NM_148961	NP_683764	Q8NHW6	OTOSP_HUMAN	otospiralin precursor	75						extracellular region					0		all_epithelial(40;2.79e-15)|Breast(86;3.04e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0396)|Lung NSC(271;0.128)|Hepatocellular(293;0.148)|all_hematologic(139;0.158)|Melanoma(123;0.16)		Epithelial(32;2.56e-30)|all cancers(36;7.18e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.37e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;8.07e-06)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		TGCTCCCCAGGGGGAAGTGGG	0.647													29	59					0	0	1	0	0
KIF1A	547	broad.mit.edu	37	2	241706374	241706374	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:241706374C>A	uc002vzy.2	-	18	1761	c.1615G>T	c.(1615-1617)GAG>TAG	p.E539*	KIF1A_uc010fzk.2_Nonsense_Mutation_p.E548*|KIF1A_uc002vzz.1_Nonsense_Mutation_p.E548*	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	539	FHA.				anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		ACGCAGTGCTCCTCCTTGATG	0.652													15	24					1.67942e-08	1.69146e-08	1	1	0
ING5	84289	broad.mit.edu	37	2	242664416	242664416	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr2:242664416G>A	uc002wcd.2	+	8	718	c.693G>A	c.(691-693)CGG>CGA	p.R231R		NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	231	PHD-type.				DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		TCTGTCCACGGTGTGTCCAGG	0.592													19	51					0	0	1	0	0
DEFB125	245938	broad.mit.edu	37	20	76958	76958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:76958C>T	uc002wcw.2	+	2	371	c.371C>T	c.(370-372)CCA>CTA	p.P124L		NM_153325	NP_697020	Q8N687	DB125_HUMAN	defensin, beta 125 preproprotein	124					defense response to bacterium	extracellular region				ovary(1)|central_nervous_system(1)|skin(1)	3		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.156)			ACTATGCCACCATCTGAGGCC	0.443													113	203					0	0	1	0	0
ANGPT4	51378	broad.mit.edu	37	20	858822	858822	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:858822C>A	uc002wei.2	-	7	1305	c.1202G>T	c.(1201-1203)AGT>ATT	p.S401I	ANGPT4_uc010zpn.1_Missense_Mutation_p.S395I	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	401	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						CTGGTTCTCACTGCCCAGGTG	0.627													23	23					9.04412e-07	9.09347e-07	1	1	0
ANGPT4	51378	broad.mit.edu	37	20	870936	870936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:870936C>T	uc002wei.2	-	2	488	c.385G>A	c.(385-387)GCC>ACC	p.A129T	ANGPT4_uc010zpn.1_Missense_Mutation_p.A123T	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	129	Potential.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						AGCATGGGGGCCGTCTGATTC	0.602													30	48					0	0	1	0	0
RSPO4	343637	broad.mit.edu	37	20	944708	944708	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:944708C>T	uc002wej.2	-	4	562	c.465G>A	c.(463-465)AAG>AAA	p.K155K	RSPO4_uc002wek.2_Intron	NM_001029871	NP_001025042	Q2I0M5	RSPO4_HUMAN	R-spondin family, member 4 isoform 1 precursor	155	TSP type-1.				Wnt receptor signaling pathway	extracellular region	heparin binding				0						AGCCGCAGGTCTTTCCATTGT	0.587													13	35					0	0	1	0	0
SIRPB1	10326	broad.mit.edu	37	20	1551649	1551649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:1551649C>T	uc010gai.2	-	4	985	c.886G>A	c.(886-888)GAA>AAA	p.E296K	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	296	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						GAAGCTGTTTCTGTCCGGGAC	0.562													34	95					0	0	1	0	0
SIRPB1	10326	broad.mit.edu	37	20	1551765	1551765	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:1551765A>G	uc010gai.2	-	4	869	c.770T>C	c.(769-771)GTT>GCT	p.V257A	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	257	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CTGTTGAGTAACCTCCAAGGT	0.547													16	51					0	0	1	0	0
TGM3	7053	broad.mit.edu	37	20	2297848	2297848	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:2297848C>T	uc002wfx.3	+	6	901	c.804C>T	c.(802-804)GTC>GTT	p.V268V		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	268					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	TCAGCCCAGTCCGATATGGCC	0.582													65	78					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2380991	2380991	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:2380991A>G	uc002wfy.1	+	7	951	c.890A>G	c.(889-891)AAC>AGC	p.N297S	TGM6_uc010gal.1_Missense_Mutation_p.N297S	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	297					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GTCGTGTCCAACTTCAACTCA	0.617													36	67					0	0	1	0	0
TGM6	343641	broad.mit.edu	37	20	2413241	2413241	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:2413241C>T	uc002wfy.1	+	13	2134	c.2073C>T	c.(2071-2073)TTC>TTT	p.F691F	TGM6_uc010gal.1_3'UTR	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	691					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	GCCCTCACTTCCCGGACATCA	0.592													62	143					0	0	1	0	0
ZNF343	79175	broad.mit.edu	37	20	2473350	2473350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:2473350G>A	uc002wge.1	-	5	787	c.299C>T	c.(298-300)TCA>TTA	p.S100L	ZNF343_uc010gao.1_Missense_Mutation_p.S100L|ZNF343_uc002wgd.1_Missense_Mutation_p.S10L	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	100	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CTTACCCAATGAGAGAAGATT	0.284													52	86					0	0	1	0	0
GNRH2	2797	broad.mit.edu	37	20	3025446	3025446	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:3025446C>T	uc002whr.1	+	3	327	c.276C>T	c.(274-276)TCC>TCT	p.S92S	GNRH2_uc002whp.1_Silent_p.S85S|GNRH2_uc002whq.1_Silent_p.S84S|GNRH2_uc010gau.1_Silent_p.S92S|MRPS26_uc002whs.2_5'Flank	NM_001501	NP_001492	O43555	GON2_HUMAN	gonadotropin-releasing hormone 2 isoform a	92					multicellular organismal development|signal transduction	extracellular region|soluble fraction	hormone activity				0						CCCAGTGGTCCCTTCACAGGA	0.642													7	28					0	0	1	0	0
C20orf194	25943	broad.mit.edu	37	20	3277521	3277521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:3277521C>T	uc002wii.2	-	23	2056	c.2005G>A	c.(2005-2007)GAA>AAA	p.E669K	C20orf194_uc002wij.3_Missense_Mutation_p.E408K|C20orf194_uc002wik.2_Missense_Mutation_p.E343K	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	669											0						CTCTTTTGTTCCACAGATAAT	0.433													105	255					0	0	1	0	0
MAVS	57506	broad.mit.edu	37	20	3846655	3846655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:3846655C>T	uc002wjw.3	+	7	1653	c.1484C>T	c.(1483-1485)CCA>CTA	p.P495L	MAVS_uc002wjx.3_Missense_Mutation_p.P354L|MAVS_uc002wjy.3_Missense_Mutation_p.P193L	NM_020746	NP_065797	Q7Z434	MAVS_HUMAN	virus-induced signaling adapter	495	Cytoplasmic (Probable).				activation of innate immune response|cellular response to exogenous dsRNA|defense response to bacterium|innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production|positive regulation of chemokine (C-C motif) ligand 5 production|positive regulation of defense response to virus by host|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interleukin-8 production|positive regulation of IP-10 production|positive regulation of protein import into nucleus, translocation|positive regulation of protein phosphorylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription factor import into nucleus|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of type I interferon-mediated signaling pathway|response to virus	integral to membrane|mitochondrial outer membrane	CARD domain binding|protein kinase binding|signal transducer activity				0						GGCCCCAGGCCACAAGCCGAC	0.677													27	29					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5282919	5282919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:5282919C>T	uc010zqw.1	-	2	922	c.922G>A	c.(922-924)GAA>AAA	p.E308K	PROKR2_uc010zqx.1_Missense_Mutation_p.E308K|PROKR2_uc010zqy.1_Missense_Mutation_p.E308K	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	308	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TAGTGCTTTTCCTTCACGAAC	0.532										HNSCC(71;0.22)			59	98					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5283085	5283085	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:5283085G>A	uc010zqw.1	-	2	756	c.756C>T	c.(754-756)TTC>TTT	p.F252F	PROKR2_uc010zqx.1_Silent_p.F252F|PROKR2_uc010zqy.1_Silent_p.F252F	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	252	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GGACTGCCTTGAACCAGAGCT	0.587										HNSCC(71;0.22)			27	54					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903440	5903440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:5903440C>T	uc002wmg.2	+	4	956	c.650C>T	c.(649-651)TCG>TTG	p.S217L	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	217						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						GTGGCCAGATCGGAAACACAT	0.498													16	29					0	0	1	0	0
MCM8	84515	broad.mit.edu	37	20	5948085	5948085	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:5948085C>T	uc002wmi.2	+	9	1256	c.879C>T	c.(877-879)ATC>ATT	p.I293I	MCM8_uc002wmj.2_Silent_p.I293I|MCM8_uc002wmk.2_Silent_p.I293I|MCM8_uc002wml.2_Silent_p.I293I|MCM8_uc010gbp.2_Silent_p.I293I	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	293					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						TTTTTAGAATCCAGGAATTGA	0.388													31	39					0	0	1	0	0
MCM8	84515	broad.mit.edu	37	20	5952663	5952663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:5952663C>T	uc002wmi.2	+	11	1611	c.1234C>T	c.(1234-1236)CCT>TCT	p.P412S	MCM8_uc002wmj.2_Missense_Mutation_p.P396S|MCM8_uc002wmk.2_Intron|MCM8_uc002wml.2_Missense_Mutation_p.P412S|MCM8_uc010gbp.2_Missense_Mutation_p.P412S|MCM8_uc002wmm.2_5'UTR	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	412	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						CTCGCTTTGCCCTGTCATTTT	0.294													20	75					0	0	1	0	0
PLCB1	23236	broad.mit.edu	37	20	8737765	8737765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:8737765C>T	uc002wnb.2	+	24	2599	c.2596C>T	c.(2596-2598)CAC>TAC	p.H866Y	PLCB1_uc010zrb.1_Missense_Mutation_p.H765Y|PLCB1_uc002wna.2_Missense_Mutation_p.H866Y|PLCB1_uc002wnc.1_Missense_Mutation_p.H765Y|PLCB1_uc002wnd.1_Missense_Mutation_p.H443Y	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	866					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGGGGTGAATCACACTACAAC	0.498													34	87					0	0	1	0	0
C20orf103	24141	broad.mit.edu	37	20	9510431	9510431	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:9510431C>T	uc002wni.1	+	6	1036	c.807C>T	c.(805-807)ATC>ATT	p.I269I	C20orf103_uc010zrc.1_Silent_p.I225I	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	269	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			AGGTGCAGATCCCTCGGGACA	0.547													34	52					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9547019	9547019	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:9547019G>A	uc002wnl.2	-	6	1548	c.1003C>T	c.(1003-1005)CGA>TGA	p.R335*	PAK7_uc002wnk.2_Nonsense_Mutation_p.R335*|PAK7_uc002wnj.2_Nonsense_Mutation_p.R335*|PAK7_uc010gby.1_Nonsense_Mutation_p.R335*	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	335	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			ATCTGTGCTCGATCGTAATCC	0.537													51	149					0	0	1	0	0
PAK7	57144	broad.mit.edu	37	20	9561572	9561572	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:9561572G>A	uc002wnl.2	-	5	755	c.210C>T	c.(208-210)ATC>ATT	p.I70I	PAK7_uc002wnk.2_Silent_p.I70I|PAK7_uc002wnj.2_Silent_p.I70I|PAK7_uc010gby.1_Silent_p.I70I	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	70	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			TTCCTCTAACGATTGTCTGGG	0.418													65	117					0	0	1	0	0
JAG1	182	broad.mit.edu	37	20	10620599	10620599	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:10620599G>A	uc002wnw.2	-	26	3720	c.3204C>T	c.(3202-3204)TTC>TTT	p.F1068F		NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	1068	Helical; (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						AGGGAACAAGGAAATCTGTAA	0.507									Alagille_Syndrome				11	25					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029643	13029643	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:13029643G>A	uc002wod.1	+	2	457	c.168G>A	c.(166-168)GAG>GAA	p.E56E	SPTLC3_uc002woc.2_Silent_p.E56E	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	56					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	AATCGTTTGAGGAAGCACCCC	0.373													62	103					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13090813	13090813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:13090813G>A	uc002wod.1	+	7	1170	c.881G>A	c.(880-882)CGA>CAA	p.R294Q		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	294					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GGCCAGCCTCGAACCCGCAGA	0.443													23	73					0	0	1	0	0
SPTLC3	55304	broad.mit.edu	37	20	13134709	13134709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:13134709G>A	uc002wod.1	+	10	1628	c.1339G>A	c.(1339-1341)GAA>AAA	p.E447K		NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	447					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	AAGACTGCAGGAAATGGGATT	0.418													27	58					0	0	1	0	0
ISM1	140862	broad.mit.edu	37	20	13273072	13273072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:13273072G>A	uc010gce.1	+	5	845	c.839G>A	c.(838-840)GGA>GAA	p.G280E	TASP1_uc010zri.1_Intron	NM_080826	NP_543016	B1AKI9	ISM1_HUMAN	isthmin 1 homolog precursor	280						extracellular region					0						CTGCTTGCGGGAAGCGAGGAG	0.388													10	14					0	0	1	0	0
C20orf7	79133	broad.mit.edu	37	20	13773846	13773846	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:13773846C>T	uc002wom.2	+	4	381	c.348C>T	c.(346-348)TTC>TTT	p.F116F	C20orf7_uc002wol.1_Silent_p.F116F|C20orf7_uc002won.2_Missense_Mutation_p.S123F|C20orf7_uc002woo.2_RNA	NM_024120	NP_077025	Q5TEU4	CT007_HUMAN	hypothetical protein LOC79133 isoform 1	116					mitochondrial respiratory chain complex I assembly	extrinsic to mitochondrial inner membrane	methyltransferase activity				0		Myeloproliferative disorder(85;0.00878)				GAAAGTTTTTCCAAGCTGACA	0.313													27	88					0	0	1	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20553675	20553675	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:20553675G>A	uc002wrz.2	-	21	2888	c.2745C>T	c.(2743-2745)ATC>ATT	p.I915I	RALGAPA2_uc010gcx.2_Silent_p.I619I|RALGAPA2_uc010zsg.1_Silent_p.I363I	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	915					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						TCCCCCCGGCGATTATACTAC	0.478													17	23					0	0	1	0	0
CST9L	128821	broad.mit.edu	37	20	23548930	23548930	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:23548930A>G	uc002wtk.3	-	1	457	c.158T>C	c.(157-159)TTT>TCT	p.F53S		NM_080610	NP_542177	Q9H4G1	CST9L_HUMAN	cystatin 9-like precursor	53						extracellular region	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					GTGGACAGCAAACTCCACTGT	0.527													31	55					0	0	1	0	0
C20orf186	149954	broad.mit.edu	37	20	31671416	31671416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:31671416G>A	uc010zue.1	+	3	428	c.413G>A	c.(412-414)CGA>CAA	p.R138Q		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	138	Gly-rich.					cytoplasm|extracellular region	lipid binding				0						GGCCTCGGGCGATACAGGGCA	0.622													29	59					0	0	1	0	0
ACSS2	55902	broad.mit.edu	37	20	33509148	33509148	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:33509148C>T	uc002xbd.2	+	11	1414	c.1293C>T	c.(1291-1293)TCC>TCT	p.S431S	ACSS2_uc002xbc.2_Silent_p.S336S|ACSS2_uc010zum.1_Intron|ACSS2_uc010gey.2_Silent_p.S444S|ACSS2_uc002xbe.2_Silent_p.S139S|ACSS2_uc002xbf.2_Intron	NM_018677	NP_061147	Q9NR19	ACSA_HUMAN	acyl-CoA synthetase short-chain family member 2	431					ethanol oxidation|lipid biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	acetate-CoA ligase activity|ATP binding|protein binding				0					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GCCGGGCATCCTTGCAGGTGT	0.597													41	94					0	0	1	0	0
GDF5	8200	broad.mit.edu	37	20	34025222	34025222	+	Missense_Mutation	SNP	G	A	A	rs34534075	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:34025222G>A	uc002xck.1	-	1	806	c.487C>T	c.(487-489)CGC>TGC	p.R163C	GDF5_uc010gfc.1_Missense_Mutation_p.R163C|GDF5_uc010zvc.1_Missense_Mutation_p.R163C	NM_000557	NP_000548	P43026	GDF5_HUMAN	growth differentiation factor 5 preproprotein	163					cartilage development|cell-cell signaling|growth|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity				0	Lung NSC(9;0.00642)|all_lung(11;0.0094)		BRCA - Breast invasive adenocarcinoma(18;0.00663)			GGGGGTGGGCGAAACGGCTCC	0.637													56	89					0	0	1	0	0
SPAG4	6676	broad.mit.edu	37	20	34207622	34207622	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:34207622A>T	uc002xdb.1	+	10	1148	c.1031A>T	c.(1030-1032)GAG>GTG	p.E344V	SPAG4_uc010zvi.1_Missense_Mutation_p.E267V	NM_003116	NP_003107	Q9NPE6	SPAG4_HUMAN	sperm associated antigen 4	344	SUN.				spermatogenesis	cilium|flagellar axoneme|integral to membrane	structural molecule activity				0	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			CCCAGCGTGGAGCACACCGGA	0.637													32	73					0	0	1	0	0
NFS1	9054	broad.mit.edu	37	20	34263105	34263105	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:34263105G>A	uc002xdw.1	-	8	874	c.810C>T	c.(808-810)ATC>ATT	p.I270I	CPNE1_uc002xdn.1_5'Flank|CPNE1_uc002xdo.1_5'Flank|CPNE1_uc002xdp.1_5'Flank|NFS1_uc002xdt.1_Silent_p.I210I|NFS1_uc002xdu.1_Silent_p.I210I|NFS1_uc002xdv.1_Intron|NFS1_uc010zvk.1_Silent_p.I68I|NFS1_uc010zvl.1_Silent_p.I219I	NM_021100	NP_066923	Q9Y697	NFS1_HUMAN	NFS1 nitrogen fixation 1 precursor	270					cysteine metabolic process|iron incorporation into metallo-sulfur cluster|Mo-molybdopterin cofactor biosynthetic process|protein complex assembly|water-soluble vitamin metabolic process	cytosol|mitochondrial matrix|nucleus	cysteine desulfurase activity|protein homodimerization activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.0886)		L-Alanine(DB00160)|L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	GCCGGCGACGGATGTAGATGG	0.522													14	25					0	0	1	0	0
PHF20	51230	broad.mit.edu	37	20	34501989	34501989	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:34501989C>T	uc002xek.1	+	12	1806	c.1695C>T	c.(1693-1695)TCC>TCT	p.S565S		NM_016436	NP_057520	Q9BVI0	PHF20_HUMAN	PHD finger protein 20	565					regulation of transcription, DNA-dependent|transcription, DNA-dependent	MLL1 complex	DNA binding|zinc ion binding			ovary(1)	1	Breast(12;0.00631)|all_lung(11;0.0145)					GTGACACCTCCCAGGAACCTT	0.517													38	60					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34773096	34773096	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:34773096C>T	uc002xfb.2	+	7	795	c.624C>T	c.(622-624)TCC>TCT	p.S208S	EPB41L1_uc002xeu.2_Silent_p.S146S|EPB41L1_uc010zvo.1_Silent_p.S208S|EPB41L1_uc002xev.2_Silent_p.S208S|EPB41L1_uc002xew.2_Silent_p.S111S|EPB41L1_uc002xex.2_Silent_p.S177S|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Silent_p.S146S	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	208	FERM.				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					TGCCATGCTCCTTTGTCACGC	0.612													48	105					0	0	1	0	0
SAMHD1	25939	broad.mit.edu	37	20	35526232	35526232	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:35526232T>G	uc002xgh.1	-	15	1869	c.1739A>C	c.(1738-1740)AAG>ACG	p.K580T	SAMHD1_uc010gft.1_RNA	NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	580					defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				TACCTGCGGCTTGGTGAAATT	0.383													33	92					0	0	1	0	0
C20orf132	140699	broad.mit.edu	37	20	35749387	35749387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:35749387C>T	uc010zvu.1	-	18	2150	c.2059G>A	c.(2059-2061)GAA>AAA	p.E687K	C20orf132_uc002xgk.2_Missense_Mutation_p.E309K	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				ATGTTGAATTCCTGCAAGCAG	0.463													10	25					0	0	1	0	0
SRC	6714	broad.mit.edu	37	20	36031725	36031725	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:36031725C>T	uc002xgx.2	+	14	2003	c.1554C>T	c.(1552-1554)TTC>TTT	p.F518F	SRC_uc002xgy.2_Silent_p.F518F	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	518	Protein kinase.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	TGCAGGCCTTCCTGGAGGACT	0.677													7	11					0	0	1	0	0
NNAT	4826	broad.mit.edu	37	20	36150759	36150759	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:36150759G>A	uc002xhd.2	+	2	200	c.73_splice	c.e2-1	p.V25_splice	BLCAP_uc002xha.2_5'Flank|BLCAP_uc002xhb.2_Intron|BLCAP_uc002xhc.2_Intron|NNAT_uc002xhe.2_Intron	NM_005386	NP_005377	Q16517	NNAT_HUMAN	neuronatin isoform alpha						brain development|protein lipoylation|transport						0		Myeloproliferative disorder(115;0.00878)				TTTCCTTCAAGGTGTTCCTGG	0.458													20	47					0	0	1	0	0
KIAA0406	9675	broad.mit.edu	37	20	36640111	36640111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:36640111G>A	uc002xhl.2	-	3	2317	c.2108C>T	c.(2107-2109)TCT>TTT	p.S703F	KIAA0406_uc002xhm.2_Missense_Mutation_p.S703F	NM_014657	NP_055472	O43156	TTI1_HUMAN	hypothetical protein LOC9675	703							binding				0		Myeloproliferative disorder(115;0.00874)				CAGATTTAAAGAGATCCCATT	0.498													26	58					0	0	1	0	0
TGM2	7052	broad.mit.edu	37	20	36784449	36784449	+	Missense_Mutation	SNP	G	A	A	rs61733919		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:36784449G>A	uc002xhr.2	-	3	333	c.233C>T	c.(232-234)CCA>CTA	p.P78L	TGM2_uc010zvx.1_Intron|TGM2_uc010zvy.1_Missense_Mutation_p.P18L|TGM2_uc002xhs.1_Intron|TGM2_uc002xht.2_Missense_Mutation_p.P78L|TGM2_uc002xhu.3_Missense_Mutation_p.P78L	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	78					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	ATCTCTTAGTGGAAAACGGGC	0.567													17	36					0	0	1	0	0
ADIG	149685	broad.mit.edu	37	20	37214709	37214710	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:37214709_37214710GG>AA	uc002xjb.1	+	2	218_219	c.162_163GG>AA	c.(160-165)TGGGAG>TGAAAG	p.54_55WE>*K		NM_001018082	NP_001018092	Q0VDE8	ADIG_HUMAN	small adipocyte factor 1	54_55					brown fat cell differentiation|positive regulation of fat cell differentiation|white fat cell differentiation	cytoplasm|integral to membrane|nucleus					0		Myeloproliferative disorder(115;0.00878)				GCTTGGATTGGGAGCCCTGGAG	0.584													6	16					0	0	1	0	0
LPIN3	64900	broad.mit.edu	37	20	39977320	39977320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:39977320C>T	uc002xjx.2	+	4	441	c.350C>T	c.(349-351)CCC>CTC	p.P117L	LPIN3_uc010ggh.2_Missense_Mutation_p.P117L|LPIN3_uc010zwf.1_RNA	NM_022896	NP_075047	Q9BQK8	LPIN3_HUMAN	lipin 3	117					fatty acid metabolic process	nucleus	phosphatidate phosphatase activity			ovary(3)|central_nervous_system(1)	4		Myeloproliferative disorder(115;0.000739)				TCTGGCTTCCCCTCGGACTCC	0.667													27	32					0	0	1	0	0
MYBL2	4605	broad.mit.edu	37	20	42341668	42341668	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:42341668C>T	uc002xlb.1	+	12	1961	c.1746C>T	c.(1744-1746)GTC>GTT	p.V582V	MYBL2_uc010zwj.1_Silent_p.V558V	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	582	Bipartite nuclear localization signal.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TCAAGAAAGTCCGGAAGTCTC	0.542													12	17					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42680182	42680182	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:42680182C>T	uc002xlf.3	+	4	692	c.675C>T	c.(673-675)TTC>TTT	p.F225F	TOX2_uc010ggo.2_Silent_p.F216F|TOX2_uc002xle.3_Silent_p.F174F|TOX2_uc010ggp.2_Silent_p.F174F|TOX2_uc002xlg.2_Silent_p.F174F|TOX2_uc010zwk.1_Silent_p.F94F	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	225	Nuclear localization signal (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			AAGTGCATTTCAAGGTATGTG	0.612													26	37					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43042351	43042351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:43042351G>A	uc002xma.2	+	4	492	c.403G>A	c.(403-405)GAC>AAC	p.D135N	HNF4A_uc002xlt.2_Missense_Mutation_p.D113N|HNF4A_uc002xlu.2_Missense_Mutation_p.D113N|HNF4A_uc002xlv.2_Missense_Mutation_p.D113N|HNF4A_uc002xly.2_Missense_Mutation_p.D135N|HNF4A_uc002xlz.2_Missense_Mutation_p.D135N|HNF4A_uc010ggq.2_Missense_Mutation_p.D128N	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	135					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GAATGAGCGGGACCGGATCAG	0.622													18	32					0	0	1	0	0
HNF4A	3172	broad.mit.edu	37	20	43057110	43057110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:43057110G>A	uc002xma.2	+	9	1354	c.1265G>A	c.(1264-1266)CGA>CAA	p.R422Q	HNF4A_uc002xlu.2_Intron|HNF4A_uc002xlv.2_Missense_Mutation_p.R400Q|HNF4A_uc002xlz.2_Intron|HNF4A_uc010ggq.2_Missense_Mutation_p.R415Q	NM_000457	NP_000448	P41235	HNF4A_HUMAN	hepatocyte nuclear factor 4 alpha isoform b	422					blood coagulation|endocrine pancreas development|glucose homeostasis|negative regulation of cell growth|negative regulation of cell proliferation|ornithine metabolic process|phospholipid homeostasis|positive regulation of cholesterol homeostasis|regulation of growth hormone receptor signaling pathway|regulation of insulin secretion|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to glucose stimulus|triglyceride homeostasis|xenobiotic metabolic process	cytoplasm	activating transcription factor binding|protein homodimerization activity|receptor binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			GAGTGGCCCCGACCCAGGGGA	0.557													18	25					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43836048	43836048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:43836048C>T	uc002xni.2	+	2	167	c.110C>T	c.(109-111)TCC>TTC	p.S37F	SEMG1_uc002xnj.2_Missense_Mutation_p.S37F|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Missense_Mutation_p.S37F	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	37					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AGTGAATTTTCCCAATTTCCA	0.403													64	92					0	0	1	0	0
CDH22	64405	broad.mit.edu	37	20	44839137	44839137	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:44839137C>T	uc002xrm.2	-	6	1496	c.1095G>A	c.(1093-1095)GTG>GTA	p.V365V	CDH22_uc010ghk.1_Silent_p.V365V|CDH22_uc002xrn.1_Silent_p.V116V	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	365	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				AGCGGGGGTCCACGAACTTGT	0.706													22	38					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354628	45354628	+	Missense_Mutation	SNP	G	A	A	rs143235900		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:45354628G>A	uc002xsl.2	+	2	1050	c.953G>A	c.(952-954)AGC>AAC	p.S318N		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	318	Helical; Name=9; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				GGCCTCGTCAGCTTTGCCGTG	0.667													32	47					0	0	1	0	0
NCOA3	8202	broad.mit.edu	37	20	46264412	46264412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:46264412C>T	uc002xtk.2	+	11	1664	c.1459C>T	c.(1459-1461)CGT>TGT	p.R487C	NCOA3_uc010ght.1_Missense_Mutation_p.R497C|NCOA3_uc002xtl.2_Missense_Mutation_p.R487C|NCOA3_uc002xtm.2_Missense_Mutation_p.R487C|NCOA3_uc002xtn.2_Missense_Mutation_p.R487C|NCOA3_uc010zyc.1_Missense_Mutation_p.R282C	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	487					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						TCCTCGTAATCGTGGGAGTCC	0.413													57	99					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47990997	47990997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:47990997G>A	uc002xur.1	-	2	1264	c.1100C>T	c.(1099-1101)TCT>TTT	p.S367F	KCNB1_uc002xus.1_Missense_Mutation_p.S367F	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	367					energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCACCAGAAAGAGGCTGGGAT	0.507													29	59					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	47991189	47991189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:47991189C>T	uc002xur.1	-	2	1072	c.908G>A	c.(907-909)CGA>CAA	p.R303Q	KCNB1_uc002xus.1_Missense_Mutation_p.R303Q	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	303	Helical; Voltage-sensor; Name=Segment S4; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GCGGAGAATTCGCATGATGCG	0.532													63	71					0	0	1	0	0
PTGIS	5740	broad.mit.edu	37	20	48129637	48129637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:48129637C>T	uc002xut.2	-	8	1240	c.1186G>A	c.(1186-1188)GAA>AAA	p.E396K	PTGIS_uc010zyi.1_Missense_Mutation_p.E257K	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	396					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	GTGTAGATTTCTGGGTCTCTC	0.473													66	74					0	0	1	0	0
SNAI1	6615	broad.mit.edu	37	20	48600371	48600371	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:48600371C>A	uc002xuz.2	+	2	163	c.93C>A	c.(91-93)TTC>TTA	p.F31L		NM_005985	NP_005976	O95863	SNAI1_HUMAN	snail 1 homolog	31					epithelial to mesenchymal transition|mesoderm formation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	kinase binding|zinc ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;4.03e-06)			AGTTTACCTTCCAGCAGCCCT	0.582													84	69					6.78661e-64	6.96378e-64	1	1	0
FAM65C	140876	broad.mit.edu	37	20	49224982	49224982	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:49224982G>A	uc002xvm.2	-	11	1206	c.888C>T	c.(886-888)ATC>ATT	p.I296I	FAM65C_uc010zyt.1_Silent_p.I300I|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.I296I	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	296										ovary(2)	2						TGTCCACCACGATGACCTGCG	0.662													67	132					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49225237	49225237	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:49225237C>T	uc002xvm.2	-	10	1029	c.711G>A	c.(709-711)AAG>AAA	p.K237K	FAM65C_uc010zyt.1_Silent_p.K241K|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.K237K	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	237										ovary(2)	2						CGATCCGACCCTTGAGCTTCC	0.642													70	149					0	0	1	0	0
FAM65C	140876	broad.mit.edu	37	20	49247283	49247283	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:49247283C>T	uc002xvm.2	-	2	420	c.102G>A	c.(100-102)CGG>CGA	p.R34R	FAM65C_uc010zyt.1_Silent_p.R38R|FAM65C_uc010zyu.1_RNA|FAM65C_uc002xvn.1_Silent_p.R34R	NM_080829	NP_543019	Q96MK2	FA65C_HUMAN	hypothetical protein LOC140876	34										ovary(2)	2						ACGCGATCCTCCGGCTCTGTG	0.667													12	14					0	0	1	0	0
ATP9A	10079	broad.mit.edu	37	20	50235247	50235247	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:50235247G>A	uc002xwg.1	-	21	2304	c.2304C>T	c.(2302-2304)ATC>ATT	p.I768I	ATP9A_uc010gih.1_Silent_p.I632I|ATP9A_uc002xwf.1_Intron	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	768	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						GCAGGCGCACGATCTGGGCCT	0.647													33	43					0	0	1	0	0
SALL4	57167	broad.mit.edu	37	20	50407847	50407847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:50407847C>T	uc002xwh.3	-	2	1276	c.1175G>A	c.(1174-1176)GGG>GAG	p.G392E	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	392	C2H2-type 1.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GCTATCAGTCCCAAAAACCTT	0.562													38	82					0	0	1	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871950	51871950	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:51871950G>A	uc002xwo.2	+	2	2909	c.1953G>A	c.(1951-1953)CTG>CTA	p.L651L		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	651					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TGGGTCCCCTGAAGGAGGAGG	0.582													21	47					0	0	1	0	0
CASS4	57091	broad.mit.edu	37	20	55012582	55012582	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:55012582C>T	uc002xxp.2	+	3	624	c.399C>T	c.(397-399)TTC>TTT	p.F133F	CASS4_uc002xxq.3_Silent_p.F133F|CASS4_uc002xxr.2_Silent_p.F133F|CASS4_uc010zze.1_Intron|CASS4_uc010gio.2_Silent_p.F133F	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	133					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						TCTATGAATTCCCCGACCCTC	0.572													68	137					0	0	1	0	0
RAE1	8480	broad.mit.edu	37	20	55949720	55949721	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:55949720_55949721GG>AA	uc002xyg.2	+	11	1224_1225	c.883_884GG>AA	c.(883-885)GGT>AAT	p.G295N	RAE1_uc010gis.1_Missense_Mutation_p.G248N|RAE1_uc010git.1_Missense_Mutation_p.G295N|RAE1_uc002xyh.2_Missense_Mutation_p.G295N|RAE1_uc002xyi.2_Missense_Mutation_p.G295N	NM_003610	NP_003601	P78406	RAE1L_HUMAN	RAE1 (RNA export 1, S.pombe) homolog	295	WD 4.				carbohydrate metabolic process|glucose transport|mRNA export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|cytoskeleton|nuclear outer membrane|nuclear pore	microtubule binding|RNA binding				0	Lung NSC(12;0.00263)|all_lung(29;0.00828)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(4;3.7e-14)|Epithelial(14;1.07e-09)|all cancers(14;1.11e-08)			GGGATCTGATGGTAGATTCAGC	0.47													76	191					0	0	1	0	0
APCDD1L	164284	broad.mit.edu	37	20	57036095	57036095	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:57036095G>A	uc002xze.1	-	4	1443	c.1257C>T	c.(1255-1257)GAC>GAT	p.D419D	APCDD1L_uc010zzp.1_Silent_p.D430D	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	419						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			GCCCGAGGGGGTCTTGTTCCA	0.612													43	88					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57769235	57769235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:57769235C>T	uc002yan.2	+	1	3161	c.3161C>T	c.(3160-3162)TCC>TTC	p.S1054F		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1054						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCTACCTCCTCCCCGCCCACT	0.642													9	24					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60470047	60470047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:60470047G>A	uc002ybn.1	+	8	1146	c.1132G>A	c.(1132-1134)GCC>ACC	p.A378T	CDH4_uc002ybp.1_Missense_Mutation_p.A304T	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	378	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			CACAGCCACAGCCATCATCAC	0.542													121	214					0	0	1	0	0
TAF4	6874	broad.mit.edu	37	20	60578222	60578222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:60578222G>A	uc002ybs.2	-	9	2480	c.2480C>T	c.(2479-2481)TCG>TTG	p.S827L		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	827					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			TTACCGAAACGAACCTCCCCC	0.572													29	48					0	0	1	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981924	61981924	+	Missense_Mutation	SNP	G	A	A	rs121909580		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:61981924G>A	uc002yes.2	-	5	1017	c.839C>T	c.(838-840)TCC>TTC	p.S280F	CHRNA4_uc002yet.1_Missense_Mutation_p.S104F|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Missense_Mutation_p.S209F|CHRNA4_uc002yev.1_Missense_Mutation_p.S104F|CHRNA4_uc010gkf.1_Missense_Mutation_p.S104F	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	280	Helical; (Potential).		S -> L (in ENFL1).|S -> F (in ENFL1).		B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	CAGCAGCACGGAGATGCACAG	0.592													34	75					0	0	1	0	0
PRPF6	24148	broad.mit.edu	37	20	62664278	62664278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:62664278G>A	uc002yho.2	+	21	2926	c.2758G>A	c.(2758-2760)GCC>ACC	p.A920T	PRPF6_uc002yhp.2_Missense_Mutation_p.A880T|NCRNA00176_uc002yhq.2_5'Flank|NCRNA00176_uc011abq.1_5'Flank	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	920					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					CAAGGACATCGCCAACTGGCA	0.637													4	68					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10908889	10908889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:10908889G>A	uc002yip.1	-	23	1824	c.1456C>T	c.(1456-1458)CCT>TCT	p.P486S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P468S|TPTE_uc002yir.1_Missense_Mutation_p.P448S|TPTE_uc010gkv.1_Missense_Mutation_p.P348S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	486	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TAGTATGTAGGAAGATTCTAA	0.264													5	17					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10916465	10916465	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:10916465A>G	uc002yip.1	-	20	1549	c.1181T>C	c.(1180-1182)GTT>GCT	p.V394A	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Missense_Mutation_p.V376A|TPTE_uc002yir.1_Missense_Mutation_p.V356A|TPTE_uc010gkv.1_Missense_Mutation_p.V256A	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	394	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AAAATATGCAACATATCTCTT	0.338													7	64					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10934049	10934050	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:10934049_10934050GG>AA	uc002yip.1	-	16	1295_1296	c.927_928CC>TT	c.(925-930)GTCCCC>GTTTCC	p.P310S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P292S|TPTE_uc002yir.1_Missense_Mutation_p.P272S|TPTE_uc010gkv.1_Missense_Mutation_p.P172S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	310	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TGTAGAGTGGGGACATTATGAT	0.302													22	143					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10996094	10996094	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:10996094C>T	uc002yis.1	-	12		c.2092G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTGGTTTTCCCTTGCCCAGT	0.388													12	49					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058213	11058213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:11058213G>A	uc002yit.1	-	3	435	c.227C>T	c.(226-228)TCA>TTA	p.S76L	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGATGTGACTGAAATCCTGAA	0.408													15	59					0	0	1	0	0
LIPI	149998	broad.mit.edu	37	21	15579187	15579187	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:15579187G>A	uc002yjm.2	-	1	68	c.58C>T	c.(58-60)CAG>TAG	p.Q20*		NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	Error:Variant_position_missing_in_Q6XZB0_after_alignment					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		GGTGAGAACTGAAAAGCATGA	0.229													18	23					0	0	1	0	0
MIR125B2	406912	broad.mit.edu	37	21	17962643	17962643	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:17962643G>A	hsa-mir-125b-2|MI0000470	+			c.87G>A			C21orf34_uc002ykb.2_Intron|C21orf34_uc010glc.2_Intron|C21orf34_uc002ykc.2_Intron|uc002ykf.2_RNA																	0						TAGGCGGAGGGGAACCAGCAG	0.438													6	22					0	0	1	0	0
NCAM2	4685	broad.mit.edu	37	21	22746188	22746188	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:22746188G>A	uc002yld.1	+	9	1299	c.1050G>A	c.(1048-1050)CTG>CTA	p.L350L	NCAM2_uc011acb.1_Silent_p.L208L|NCAM2_uc011acc.1_Silent_p.L375L	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	350	Ig-like C2-type 4.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		AACAGAGCCTGGACGGCCGTA	0.408													34	58					0	0	1	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28296451	28296451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:28296451C>T	uc002ymg.2	-	8	3443	c.2714G>A	c.(2713-2715)GGA>GAA	p.G905E		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	905	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CTTCCGGTTTCCATCCTGGCA	0.532													17	52					0	0	1	0	0
BACH1	571	broad.mit.edu	37	21	30723990	30723990	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:30723990C>T	uc002ynl.2	+	5		c.1956C>T				NM_206866		O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor							nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						AAGAAGTGTTCCATACCATTC	0.433													19	66					0	0	1	0	0
KRTAP15-1	254950	broad.mit.edu	37	21	31812855	31812855	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:31812855C>T	uc002yod.2	+	1	210	c.210C>T	c.(208-210)TCC>TCT	p.S70S		NM_181623	NP_853654	Q3LI76	KR151_HUMAN	keratin associated protein 15-1	70						intermediate filament					0						TGGCCAGATCCTATCAGACAT	0.517													45	97					0	0	1	0	0
RUNX1	861	broad.mit.edu	37	21	36171749	36171749	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:36171749C>T	uc002yuh.2	-	5	2313	c.735G>A	c.(733-735)CAG>CAA	p.Q245Q	RUNX1_uc002yui.2_Silent_p.Q181Q|RUNX1_uc010gmu.2_Silent_p.Q272Q|RUNX1_uc010gmv.2_Silent_p.Q272Q|RUNX1_uc002yuj.3_Silent_p.Q140Q|RUNX1_uc002yuk.3_Silent_p.Q272Q|RUNX1_uc002yul.1_Silent_p.Q37Q|RUNX1_uc002yum.1_Silent_p.Q76Q	NM_001001890	NP_001001890	Q01196	RUNX1_HUMAN	runt-related transcription factor 1 isoform	245	Pro/Ser/Thr-rich.			Missing: No DNA-binding.	myeloid cell differentiation|negative regulation of granulocyte differentiation|positive regulation of angiogenesis|positive regulation of granulocyte differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent	nucleus|nucleus	ATP binding|calcium ion binding|DNA binding|DNA binding|protein binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			haematopoietic_and_lymphoid_tissue(383)|lung(2)|ovary(1)|central_nervous_system(1)	387						ATGGTTGGATCTGCCTTGTAT	0.453			T	RPL22|MDS1|EVI1|CBFA2T3|CBFA2T1|ETV6|LAF4	AML|preB- ALL|T-ALL				Platelet_disorder_associated_with_Myeloid_Malignancies				23	54					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37603262	37603262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:37603262G>A	uc002yvg.2	+	14	2259	c.2180G>A	c.(2179-2181)GGG>GAG	p.G727E	DOPEY2_uc011aeb.1_Missense_Mutation_p.G727E	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	727					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						AGGAAAAACGGGGGAGAATGG	0.572													20	39					0	0	1	0	0
KCNJ15	3772	broad.mit.edu	37	21	39672006	39672006	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:39672006A>G	uc002ywv.2	+	4	1125	c.823A>G	c.(823-825)AAG>GAG	p.K275E	KCNJ15_uc002yww.2_Missense_Mutation_p.K275E|KCNJ15_uc002ywx.2_Missense_Mutation_p.K275E	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	275	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						CCTAAAGGAGAAGGAGTTTGA	0.537													22	43					0	0	1	0	0
LCA5L	150082	broad.mit.edu	37	21	40795370	40795370	+	Silent	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:40795370T>G	uc002yxu.2	-	5	682	c.369A>C	c.(367-369)TCA>TCC	p.S123S	LCA5L_uc002yxv.2_Silent_p.S123S|LCA5L_uc002yxw.1_Silent_p.S123S|LCA5L_uc002yxx.1_5'UTR|LCA5L_uc002yxy.2_RNA	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	123											0		Prostate(19;1.2e-06)				AATTAAAGAGTGATGCATTCC	0.343													26	62					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41496137	41496137	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:41496137G>A	uc002yyq.1	-	20	4133	c.3681C>T	c.(3679-3681)TCC>TCT	p.S1227S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1227	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GATAGGGGTGGGAGCAGAATA	0.552													70	158					0	0	1	0	0
MX2	4600	broad.mit.edu	37	21	42748916	42748916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:42748916C>T	uc002yzf.1	+	2	187	c.83C>T	c.(82-84)TCC>TTC	p.S28F	MX2_uc011aer.1_RNA	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	28					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				GAAATGAATTCCTTCCAGCAA	0.517													21	58					0	0	1	0	0
PRDM15	63977	broad.mit.edu	37	21	43221640	43221640	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:43221640C>T	uc002yzq.1	-	31	4395	c.4284G>A	c.(4282-4284)CAG>CAA	p.Q1428Q	PRDM15_uc002yzo.2_Silent_p.Q1099Q|PRDM15_uc002yzp.2_Silent_p.Q1119Q|PRDM15_uc002yzr.1_Silent_p.Q1119Q	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	1428					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGGGGTGGATCTGGACGTCAT	0.582													25	50					0	0	1	0	0
C2CD2	25966	broad.mit.edu	37	21	43309289	43309290	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:43309289_43309290AG>GA	uc002yzw.2	-	14	2276_2277	c.2034_2035CT>TC	c.(2032-2037)CTCTCC>CTTCCC	p.S679P	C2CD2_uc002yzs.2_Missense_Mutation_p.S148P|C2CD2_uc002yzt.2_Missense_Mutation_p.S295P|C2CD2_uc002yzu.2_Missense_Mutation_p.S511P|C2CD2_uc002yzv.2_Missense_Mutation_p.S524P	NM_015500	NP_056315	Q9Y426	CU025_HUMAN	C2 calcium-dependent domain containing 2 isoform	679				S -> P (in Ref. 2; CAH10536).		cytosol|extracellular region|nucleus				ovary(1)	1						CTGTGCCTGGAGAGCAGCTTCT	0.574													13	38					0	0	1	0	0
PDE9A	5152	broad.mit.edu	37	21	44188388	44188388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:44188388G>A	uc002zbm.2	+	16	1510	c.1447G>A	c.(1447-1449)GAA>AAA	p.E483K	PDE9A_uc002zbn.2_Missense_Mutation_p.E356K|PDE9A_uc002zbo.2_Missense_Mutation_p.E430K|PDE9A_uc002zbp.2_Missense_Mutation_p.E276K|PDE9A_uc002zbq.2_Missense_Mutation_p.E381K|PDE9A_uc002zbs.2_Missense_Mutation_p.E276K|PDE9A_uc002zbr.2_Missense_Mutation_p.E276K|PDE9A_uc002zbt.2_Missense_Mutation_p.E355K|PDE9A_uc002zbu.2_Missense_Mutation_p.E349K|PDE9A_uc002zbv.2_Missense_Mutation_p.E323K|PDE9A_uc002zbw.2_Missense_Mutation_p.E266K|PDE9A_uc002zbx.2_Missense_Mutation_p.E423K|PDE9A_uc002zby.2_Missense_Mutation_p.E266K|PDE9A_uc002zbz.2_Missense_Mutation_p.E375K|PDE9A_uc002zca.2_Missense_Mutation_p.E442K|PDE9A_uc002zcb.2_Missense_Mutation_p.E457K|PDE9A_uc002zcc.2_Missense_Mutation_p.E382K|PDE9A_uc002zcd.2_Missense_Mutation_p.E397K|PDE9A_uc002zce.2_Missense_Mutation_p.E416K|PDE9A_uc002zcf.2_Missense_Mutation_p.E276K|PDE9A_uc002zcg.2_Missense_Mutation_p.E276K|PDE9A_uc002zch.2_Missense_Mutation_p.E266K	NM_002606	NP_002597	O76083	PDE9A_HUMAN	phosphodiesterase 9A isoform a	483	Catalytic (By similarity).				platelet activation|signal transduction	cytosol|endoplasmic reticulum|Golgi apparatus|perinuclear region of cytoplasm|ruffle membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|skin(1)	2						TTTATTAGAGGAATATTTTAT	0.453													6	24					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45837850	45837850	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:45837850T>C	uc002zet.1	+	22	3400	c.3187T>C	c.(3187-3189)TGG>CGG	p.W1063R	TRPM2_uc002zeu.1_Missense_Mutation_p.W1063R|TRPM2_uc002zew.1_Missense_Mutation_p.W1063R|TRPM2_uc010gpt.1_Missense_Mutation_p.W1063R|TRPM2_uc002zex.1_Missense_Mutation_p.W849R|TRPM2_uc002zey.1_Missense_Mutation_p.W576R|uc011afe.1_Intron	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	1063	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGACCAGATTTGGAAGTTCCA	0.488													27	51					0	0	1	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959331	45959331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:45959331G>A	uc002zfh.1	-	1	748	c.703C>T	c.(703-705)CTC>TTC	p.L235F	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	235	24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						GGGCGGCAGAGGAGGGACACG	0.687													32	131					0	0	1	0	0
KRTAP10-1	386677	broad.mit.edu	37	21	45959788	45959788	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:45959788C>T	uc002zfh.1	-	1	291	c.246G>A	c.(244-246)CAG>CAA	p.Q82Q	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198691	NP_941964	P60331	KR101_HUMAN	keratin associated protein 10-1	82	5.|24 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						ggcagctagacTGCTGGCAGC	0.348													50	61					0	0	1	0	0
KRTAP10-2	386679	broad.mit.edu	37	21	45971254	45971254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:45971254G>A	uc002zfi.1	-	1	135	c.88C>T	c.(88-90)CCC>TCC	p.P30S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198693	NP_941966	P60368	KR102_HUMAN	keratin associated protein 10-2	30	22 X 5 AA repeats of C-C-X(3).|1.					keratin filament				large_intestine(1)	1						GTGCCGCAGGGGAGCTCACAG	0.687													45	76					0	0	1	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011787	46011787	+	Silent	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:46011787G>T	uc002zfm.2	-	1	600	c.579C>A	c.(577-579)CCC>CCA	p.P193P	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	193	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						GGCAGGGGCTGGGCTCACAGA	0.647													19	199					2.98393e-07	3.00124e-07	1	1	0
ITGB2	3689	broad.mit.edu	37	21	46308785	46308785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:46308785C>T	uc002zgd.2	-	13	1947	c.1903G>A	c.(1903-1905)GAA>AAA	p.E635K	ITGB2_uc002zge.2_Missense_Mutation_p.E635K|ITGB2_uc002zgf.3_Missense_Mutation_p.E635K|ITGB2_uc011afl.1_Missense_Mutation_p.E557K|ITGB2_uc010gpw.2_Missense_Mutation_p.E578K|ITGB2_uc002zgg.2_Missense_Mutation_p.E635K	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	635	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GGGCCCTTTTCGAACTTCAGG	0.672													10	30					0	0	1	0	0
ADARB1	104	broad.mit.edu	37	21	46595918	46595918	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:46595918C>A	uc002zgy.2	+	4	737	c.302C>A	c.(301-303)ACT>AAT	p.T101N	ADARB1_uc002zgr.2_Missense_Mutation_p.T101N|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Missense_Mutation_p.T101N|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Missense_Mutation_p.T101N|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Missense_Mutation_p.T150N	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	101	DRBM 1.				adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		CTGTCCCAGACTGGGCCCGTG	0.537													42	124					2.46787e-29	2.52439e-29	1	1	0
COL6A2	1292	broad.mit.edu	37	21	47535924	47535924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:47535924G>A	uc002zia.1	+	7	939	c.857G>A	c.(856-858)GGA>GAA	p.G286E	COL6A2_uc002zhy.1_Missense_Mutation_p.G286E|COL6A2_uc002zhz.1_Missense_Mutation_p.G286E|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	286	Triple-helical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CCTTCACAGGGAGACCCGGGC	0.682													5	10					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47552017	47552017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:47552017G>A	uc002zia.1	+	28	2693	c.2611G>A	c.(2611-2613)GAC>AAC	p.D871N	COL6A2_uc002zib.1_Missense_Mutation_p.D277N|COL6A2_uc002zic.1_5'UTR|COL6A2_uc010gqe.1_RNA	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	871	Nonhelical region.|VWFA 3.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		GAGGGACGACGACCCTCTCAA	0.711													3	9					0	0	1	0	0
PCNT	5116	broad.mit.edu	37	21	47860906	47860907	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:47860906_47860907GG>AA	uc002zji.3	+	43	9639_9640	c.9532_9533GG>AA	c.(9532-9534)GGG>AAG	p.G3178K	PCNT_uc002zjj.2_Missense_Mutation_p.G2981K	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	3178	Interaction with NEK2.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TGCCCATTTGGGGGTATTTCCT	0.431													14	63					0	0	1	0	0
DIP2A	23181	broad.mit.edu	37	21	47959800	47959800	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr21:47959800C>T	uc002zjo.2	+	17	2115	c.1932C>T	c.(1930-1932)TCC>TCT	p.S644S	DIP2A_uc011afy.1_Silent_p.S580S|DIP2A_uc011afz.1_Silent_p.S640S|DIP2A_uc002zjl.2_Silent_p.S644S|DIP2A_uc002zjm.2_Silent_p.S644S|DIP2A_uc010gql.2_Silent_p.S601S|DIP2A_uc002zjn.2_Silent_p.S644S|DIP2A_uc002zjp.1_Silent_p.S389S|DIP2A_uc002zjq.2_Silent_p.S36S	NM_015151	NP_055966	Q14689	DIP2A_HUMAN	disco-interacting protein 2A isoform a	644					multicellular organismal development	nucleus	catalytic activity|transcription factor binding			ovary(2)	2	Breast(49;0.0933)			Epithelial(3;3.12e-06)|OV - Ovarian serous cystadenocarcinoma(3;5.68e-06)|all cancers(3;4.08e-05)|Colorectal(79;0.0129)|COAD - Colon adenocarcinoma(84;0.0824)		GGTCGATCTCCTCCTGTGACG	0.597													19	71					0	0	1	0	0
XKR3	150165	broad.mit.edu	37	22	17280821	17280821	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:17280821C>T	uc002zlv.2	-	3	527	c.429G>A	c.(427-429)ACG>ACA	p.T143T	XKR3_uc011agf.1_Silent_p.T143T	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	143						integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TTTCCAGCATCGTGTTTCTCT	0.403													62	106					0	0	1	0	0
CECR5	27440	broad.mit.edu	37	22	17619146	17619146	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:17619146C>A	uc002zmf.2	-	8	1065	c.1037G>T	c.(1036-1038)CGG>CTG	p.R346L	CECR5_uc002zmd.2_Missense_Mutation_p.R157L|CECR5_uc002zme.2_Missense_Mutation_p.R138L|CECR5_uc002zmg.2_Missense_Mutation_p.R146L|CECR5_uc002zmh.2_Missense_Mutation_p.R316L	NM_033070	NP_149061	Q9BXW7	CECR5_HUMAN	cat eye syndrome chromosome region, candidate 5	346							hydrolase activity				0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)				CTGTTGCTGCCGTGTGCCCCC	0.597													33	50					1.836e-18	1.8619e-18	1	1	0
CECR2	27443	broad.mit.edu	37	22	18029071	18029071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:18029071C>T	uc010gqw.1	+	16	4154	c.4028C>T	c.(4027-4029)TCC>TTC	p.S1343F	CECR2_uc010gqv.1_Missense_Mutation_p.S1201F|CECR2_uc002zml.2_Missense_Mutation_p.S1202F|CECR2_uc002zmo.2_RNA	NM_031413	NP_113601	Q9BXF3	CECR2_HUMAN	cat eye syndrome chromosome region, candidate 2	1385					chromatin modification|cytokinesis|cytoskeleton organization|DNA fragmentation involved in apoptotic nuclear change|vesicle-mediated transport		protein binding			ovary(1)|skin(1)	2		all_epithelial(15;0.139)		Lung(27;0.146)		GCTTACTCTTCCCCTGTGGCT	0.642													20	42					0	0	1	0	0
TUBA8	51807	broad.mit.edu	37	22	18613844	18613844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:18613844G>A	uc002znv.1	+	5	1364	c.1291G>A	c.(1291-1293)GAT>AAT	p.D431N	TUBA8_uc002znr.2_Missense_Mutation_p.D365N|TUBA8_uc002znw.1_Missense_Mutation_p.D455N|TUBA8_uc002znx.1_Intron	NM_018943	NP_061816	Q9NY65	TBA8_HUMAN	tubulin, alpha 8	431					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0						CCTGGAGAAGGATTATGAAGA	0.458													43	69					0	0	1	0	0
DGCR2	9993	broad.mit.edu	37	22	19076956	19076956	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:19076956G>A	uc002zoq.1	-	2	375	c.127C>T	c.(127-129)CAG>TAG	p.Q43*	DGCR2_uc002zor.1_5'UTR|DGCR2_uc011agr.1_Intron	NM_005137	NP_005128	P98153	IDD_HUMAN	integral membrane protein DGCR2 precursor	43	Extracellular (Potential).|LDL-receptor class A.				cell adhesion|organ morphogenesis	integral to membrane	receptor activity|sugar binding			large_intestine(1)	1	Colorectal(54;0.0993)					GGGATGCACTGGATGGTGCCG	0.587													30	65					0	0	1	0	0
GNB1L	54584	broad.mit.edu	37	22	19776432	19776432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:19776432G>A	uc002zqe.1	-	7	1178	c.784C>T	c.(784-786)CGG>TGG	p.R262W	GNB1L_uc002zqd.1_Missense_Mutation_p.R118W|GNB1L_uc002zqf.1_Missense_Mutation_p.R262W	NM_053004	NP_443730	Q9BYB4	GNB1L_HUMAN	guanine nucleotide binding protein	262	WD 5.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	internal side of plasma membrane|intracellular				breast(1)	1	Colorectal(54;0.0993)					CGATCTGGCCGGATCGTGACC	0.632													40	68					0	0	1	0	0
Unknown	0	broad.mit.edu	37	22	20970723	20970723	+	RNA	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:20970723T>G	uc002zsv.2	-	9		c.1902A>C								Homo sapiens, clone IMAGE:5171202, mRNA.																		AGGGCATGGCTGGTGTCCTGA	0.333													10	17					0	0	1	0	0
PI4KA	5297	broad.mit.edu	37	22	21174864	21174864	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:21174864G>A	uc002zsz.3	-	5	549	c.318C>T	c.(316-318)CTC>CTT	p.L106L	PI4KA_uc010gsq.1_Silent_p.L164L	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	106					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			ACATCCCCAAGAGGACATGCA	0.333													35	65					0	0	1	0	0
SLC7A4	6545	broad.mit.edu	37	22	21384494	21384494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:21384494G>A	uc002zud.2	-	3	1197	c.1129C>T	c.(1129-1131)CTC>TTC	p.L377F	SLC7A4_uc002zue.2_Missense_Mutation_p.L377F	NM_004173	NP_004164	O43246	CTR4_HUMAN	solute carrier family 7 (cationic amino acid	377	Helical; (Potential).				cellular amino acid metabolic process	integral to membrane	basic amino acid transmembrane transporter activity			ovary(1)|lung(1)	2	all_cancers(11;2.85e-22)|Lung NSC(8;4.21e-14)|all_lung(8;6.08e-13)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0968)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)		L-Arginine(DB00125)|L-Lysine(DB00123)|L-Ornithine(DB00129)	AAGGCCGTGAGGAGCCCGAAC	0.627													8	23					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22673403	22673403	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:22673403C>T	uc011aim.1	+	33		c.2482C>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GAACCCTCCCCGGTATCTCCT	0.542													43	70					0	0	1	0	0
LOC96610	96610	broad.mit.edu	37	22	22697965	22697965	+	RNA	SNP	C	T	T	rs112293276		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:22697965C>T	uc011aim.1	+	39		c.3925C>T								Parts of antibodies, mostly variable regions.												0						CATCCCTGATCGCTTCTCAGT	0.577											OREG0026357	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	23					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23653976	23653977	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:23653976_23653977CC>TT	uc002zww.2	+	19	3871_3872	c.3275_3276CC>TT	c.(3274-3276)TCC>TTT	p.S1092F	BCR_uc002zwx.2_Missense_Mutation_p.S1048F|BCR_uc011aiy.1_Missense_Mutation_p.S681F	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1092	Rho-GAP.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						TACCGCGTGTCCGGTGTGGCCA	0.649			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								25	57					0	0	1	0	0
BCR	613	broad.mit.edu	37	22	23657659	23657659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:23657659C>T	uc002zww.2	+	23	4362	c.3766C>T	c.(3766-3768)CCT>TCT	p.P1256S	BCR_uc002zwx.2_Missense_Mutation_p.P1212S|BCR_uc011aiy.1_Missense_Mutation_p.P845S	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1256					regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						GGAGGCCATCCCTGCCCCGGA	0.617			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								31	78					0	0	1	0	0
CABIN1	23523	broad.mit.edu	37	22	24451496	24451496	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:24451496C>T	uc002zzi.1	+	9	1094	c.967C>T	c.(967-969)CAG>TAG	p.Q323*	CABIN1_uc002zzj.1_Nonsense_Mutation_p.Q273*|CABIN1_uc002zzl.1_Nonsense_Mutation_p.Q323*|CABIN1_uc010guk.1_Nonsense_Mutation_p.Q278*|CABIN1_uc002zzk.1_Nonsense_Mutation_p.Q278*	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	323					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TAACGTGATCCAGCCAAGCAC	0.592													50	106					0	0	1	0	0
CABIN1	23523	broad.mit.edu	37	22	24515547	24515548	+	Missense_Mutation	DNP	GG	AA	AA	rs144331024		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:24515547_24515548GG>AA	uc002zzi.1	+	28	4641_4642	c.4514_4515GG>AA	c.(4513-4515)CGG>CAA	p.R1505Q	CABIN1_uc002zzj.1_Missense_Mutation_p.R1426Q|CABIN1_uc002zzl.1_Missense_Mutation_p.R1505Q	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1505					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GAGGAGCAGCGGCAGTTTCTCA	0.639													72	89					0	0	1	0	0
CABIN1	23523	broad.mit.edu	37	22	24530369	24530369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:24530369C>T	uc002zzi.1	+	29	4860	c.4733C>T	c.(4732-4734)ACC>ATC	p.T1578I	CABIN1_uc002zzj.1_Missense_Mutation_p.T1499I|CABIN1_uc002zzl.1_Missense_Mutation_p.T1578I	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1578					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AGGAACAAGACCAATTTCTTC	0.542													22	31					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25275471	25275471	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:25275471C>T	uc003abg.2	+	15	1795	c.1638C>T	c.(1636-1638)ATC>ATT	p.I546I	SGSM1_uc003abh.2_Silent_p.I546I|SGSM1_uc010guu.1_Silent_p.I491I|SGSM1_uc003abj.2_Silent_p.I491I|SGSM1_uc003abi.1_Silent_p.I466I	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	546						Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						AGTACCAGATCCTCTCCAGAG	0.488													6	20					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26422421	26422421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:26422421G>A	uc003abz.1	+	43	6731	c.6481G>A	c.(6481-6483)GAG>AAG	p.E2161K	MYO18B_uc003aca.1_Missense_Mutation_p.E2042K|MYO18B_uc010guy.1_Missense_Mutation_p.E2043K|MYO18B_uc010guz.1_Missense_Mutation_p.E2041K|MYO18B_uc011aka.1_Missense_Mutation_p.E1315K|MYO18B_uc011akb.1_Missense_Mutation_p.E1674K|MYO18B_uc010gva.1_Missense_Mutation_p.E144K|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2161						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GATAAACGAAGAGGCTGGGGA	0.512													79	199					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26423416	26423416	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:26423416G>A	uc003abz.1	+	43	7726	c.7476G>A	c.(7474-7476)TTG>TTA	p.L2492L	MYO18B_uc003aca.1_Silent_p.L2373L|MYO18B_uc010guy.1_Silent_p.L2374L|MYO18B_uc010guz.1_Silent_p.L2372L|MYO18B_uc011aka.1_Silent_p.L1646L|MYO18B_uc011akb.1_Silent_p.L2005L|MYO18B_uc010gva.1_Silent_p.L475L|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2492						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AGACCATTTTGAAGAAGAGCC	0.532													18	25					0	0	1	0	0
SEZ6L	23544	broad.mit.edu	37	22	26707903	26707903	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:26707903G>A	uc003acb.2	+	8	2007	c.1851G>A	c.(1849-1851)TGG>TGA	p.W617*	SEZ6L_uc003acc.2_Nonsense_Mutation_p.W617*|SEZ6L_uc011akc.1_Nonsense_Mutation_p.W617*|SEZ6L_uc003acd.2_Nonsense_Mutation_p.W617*|SEZ6L_uc011akd.1_Nonsense_Mutation_p.W617*|SEZ6L_uc003ace.2_Nonsense_Mutation_p.W617*|SEZ6L_uc003acf.1_Nonsense_Mutation_p.W390*|SEZ6L_uc010gvc.1_Nonsense_Mutation_p.W390*	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	617	Sushi 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						ACCCATACTGGAATGACACAG	0.592													50	137					0	0	1	0	0
ASPHD2	57168	broad.mit.edu	37	22	26830118	26830118	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:26830118C>T	uc003acg.2	+	2	934	c.537C>T	c.(535-537)TTC>TTT	p.F179F		NM_020437	NP_065170	Q6ICH7	ASPH2_HUMAN	aspartate beta-hydroxylase domain containing 2	179	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity			ovary(1)	1						CGCCCTATTTCTCCCGGGACG	0.577													31	32					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29885003	29885003	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:29885003G>A	uc003afo.2	+	4	1445	c.1374G>A	c.(1372-1374)GAG>GAA	p.E458E	NEFH_uc003afp.2_5'Flank	NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	458	Tail.				cell death|nervous system development	neurofilament					0						TGATTGTGGAGGAACAGACAG	0.279													14	31					0	0	1	0	0
ASCC2	84164	broad.mit.edu	37	22	30197997	30197997	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:30197997G>A	uc003agr.2	-	14	1659	c.1554C>T	c.(1552-1554)GAC>GAT	p.D518D	ASCC2_uc003ags.2_Intron|ASCC2_uc003agt.2_Silent_p.D518D|ASCC2_uc011akr.1_Silent_p.D442D	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	518					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			CTAGGTTGCGGTCCAGCTGGC	0.637													7	5					0	0	1	0	0
MTMR3	8897	broad.mit.edu	37	22	30415681	30415681	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:30415681T>A	uc003agv.3	+	17	2361	c.2033T>A	c.(2032-2034)CTT>CAT	p.L678H	MTMR3_uc003agu.3_Missense_Mutation_p.L678H|MTMR3_uc003agw.3_Missense_Mutation_p.L678H	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	678					phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			GGTGCCGAGCTTTCTGTTGCA	0.637													50	80					0	0	1	0	0
MTP18	51537	broad.mit.edu	37	22	30824461	30824461	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:30824461C>T	uc003ahw.1	+	4	589	c.441C>T	c.(439-441)TTC>TTT	p.F147F	SEC14L2_uc010gvw.1_Intron|MTP18_uc010gvx.1_Missense_Mutation_p.S58F|MTP18_uc003ahv.1_Silent_p.F309F|MTP18_uc010gvy.1_Missense_Mutation_p.S50F|MTP18_uc003ahx.1_Missense_Mutation_p.P70S	NM_016498	NP_057582	Q9UDX5	MTFP1_HUMAN	mitochondrial protein 18 kDa isoform a	147	Helical; (Potential).				apoptosis|carbon utilization	integral to membrane|mitochondrial inner membrane	carbonate dehydratase activity|zinc ion binding				0						CGGTGGATTTCCTCCTGGACT	0.597													26	42					0	0	1	0	0
SLC35E4	339665	broad.mit.edu	37	22	31042818	31042818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:31042818C>T	uc003ais.1	+	2	1498	c.853C>T	c.(853-855)CAC>TAC	p.H285Y	SLC35E4_uc003ait.2_Intron	NM_001001479	NP_001001479	Q6ICL7	S35E4_HUMAN	solute carrier family 35, member E4	285	Leu-rich.|Helical; (Potential).					integral to membrane					0						CCTCACCGTCCACGTCCTGGG	0.637													39	90					0	0	1	0	0
SMTN	6525	broad.mit.edu	37	22	31484001	31484001	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:31484001C>T	uc003ajl.1	+	3	320	c.102C>T	c.(100-102)ATC>ATT	p.I34I	SMTN_uc003ajk.1_Silent_p.I34I|SMTN_uc003ajm.1_Silent_p.I34I|SMTN_uc011ale.1_Silent_p.I88I|SMTN_uc011alf.1_Silent_p.I90I|SMTN_uc003ajn.1_Silent_p.I26I|SMTN_uc011alg.1_5'Flank	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	34	Potential.				muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						GCTCAGCCATCCGGGAACTGC	0.667													23	23					0	0	1	0	0
INPP5J	27124	broad.mit.edu	37	22	31521821	31521821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:31521821C>T	uc003aju.3	+	2	1188	c.1096C>T	c.(1096-1098)CCT>TCT	p.P366S	INPP5J_uc010gwf.2_Missense_Mutation_p.P366S|INPP5J_uc003ajv.3_5'UTR|INPP5J_uc003ajs.3_5'UTR|INPP5J_uc011alk.1_Missense_Mutation_p.P299S|INPP5J_uc010gwg.2_Intron|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Intron|INPP5J_uc003ajx.2_5'Flank|INPP5J_uc003ajy.2_5'Flank|INPP5J_uc003ajz.2_5'Flank	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	366	Pro-rich.					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						TCCCCCAGCCCCTGACATGGC	0.667													4	19					0	0	1	0	0
INPP5J	27124	broad.mit.edu	37	22	31522468	31522468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:31522468G>A	uc003aju.3	+	3	1470	c.1378G>A	c.(1378-1380)GCC>ACC	p.A460T	INPP5J_uc010gwf.2_Missense_Mutation_p.A460T|INPP5J_uc003ajv.3_Missense_Mutation_p.A93T|INPP5J_uc003ajs.3_Missense_Mutation_p.A93T|INPP5J_uc011alk.1_Missense_Mutation_p.A393T|INPP5J_uc010gwg.2_Missense_Mutation_p.A25T|INPP5J_uc003ajw.2_5'UTR|INPP5J_uc003ajt.3_Missense_Mutation_p.A92T|INPP5J_uc003ajx.2_5'Flank|INPP5J_uc003ajy.2_5'Flank|INPP5J_uc003ajz.2_5'Flank	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	460	Catalytic (Potential).					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						AGACATGATCGCCATAGGGTG	0.662													51	144					0	0	1	0	0
BPIL2	254240	broad.mit.edu	37	22	32829755	32829755	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:32829755G>A	uc003amn.2	-	9	929	c.929C>T	c.(928-930)TCC>TTC	p.S310F	BPIL2_uc010gwo.2_Missense_Mutation_p.S124F|BPIL2_uc011amb.1_Missense_Mutation_p.S34F	NM_174932	NP_777592	Q8NFQ6	BPIL2_HUMAN	bactericidal/permeability-increasing	310						extracellular region	lipopolysaccharide binding|phospholipid binding			ovary(1)|skin(1)	2						AAAATGGTTGGAAATCTGGAA	0.403													14	35					0	0	1	0	0
FBXO7	25793	broad.mit.edu	37	22	32894359	32894359	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:32894359A>G	uc003amq.2	+	9	1694	c.1411A>G	c.(1411-1413)ACG>GCG	p.T471A	FBXO7_uc003amr.2_Missense_Mutation_p.T357A|FBXO7_uc003ams.2_Missense_Mutation_p.T315A|FBXO7_uc003amt.2_Missense_Mutation_p.T392A|FBXO7_uc003amu.2_Missense_Mutation_p.T357A|FBXO7_uc003amv.2_Missense_Mutation_p.T170A	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	471					cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						TCCTGGGGAGACGCCCAGCCA	0.567													30	104					0	0	1	0	0
LARGE	9215	broad.mit.edu	37	22	34000545	34000545	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:34000545C>T	uc003and.3	-	6	1071	c.492_splice	c.e6-1	p.R164_splice	LARGE_uc003ane.3_Splice_Site_p.R164_splice|LARGE_uc010gwp.2_Splice_Site_p.R164_splice|LARGE_uc011ame.1_Splice_Site_p.R96_splice|LARGE_uc011amf.1_Splice_Site_p.R164_splice	NM_004737	NP_004728	O95461	LARGE_HUMAN	like-glycosyltransferase						glycosphingolipid biosynthetic process|muscle cell homeostasis|N-acetylglucosamine metabolic process|protein glycosylation	integral to Golgi membrane	acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(1;0.219)				AGGGTTCCGTCTGTGGGGAGT	0.562													34	72					0	0	1	0	0
APOL5	80831	broad.mit.edu	37	22	36113938	36113938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:36113938G>A	uc003aof.2	+	1	20	c.20G>A	c.(19-21)GGA>GAA	p.G7E		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	7					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						GGCAAACAAGGAAATTTGCAA	0.363													17	48					0	0	1	0	0
APOL5	80831	broad.mit.edu	37	22	36116662	36116662	+	Missense_Mutation	SNP	G	A	A	rs139593449		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:36116662G>A	uc003aof.2	+	2	103	c.103G>A	c.(103-105)GGA>AGA	p.G35R		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	35					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						GGTAATCTACGGAGGTGAGGT	0.308													8	35					0	0	1	0	0
FOXRED2	80020	broad.mit.edu	37	22	36900296	36900296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:36900296G>A	uc003apn.3	-	3	1006	c.898C>T	c.(898-900)CCG>TCG	p.P300S	FOXRED2_uc003apo.3_Missense_Mutation_p.P300S|FOXRED2_uc003app.3_Missense_Mutation_p.P300S	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	300					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						AAGAATTTCGGGGTGACATGG	0.567													36	94					0	0	1	0	0
FOXRED2	80020	broad.mit.edu	37	22	36902049	36902049	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:36902049G>A	uc003apn.3	-	1	529	c.421C>T	c.(421-423)CAG>TAG	p.Q141*	FOXRED2_uc003apo.3_Nonsense_Mutation_p.Q141*|FOXRED2_uc003app.3_Nonsense_Mutation_p.Q141*	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	141					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						GTGTTGTACTGGACACGGAGC	0.617													36	57					0	0	1	0	0
C22orf33	339669	broad.mit.edu	37	22	37395976	37395976	+	Missense_Mutation	SNP	G	A	A	rs142285042		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:37395976G>A	uc003aqf.2	-	4	685	c.539C>T	c.(538-540)TCA>TTA	p.S180L	C22orf33_uc003aqe.2_Missense_Mutation_p.S95L	NM_001163857	NP_001157329	O43247	EAN57_HUMAN	hypothetical protein LOC339669 isoform 1	180											0						GCTGGGCCATGAGCTTGCCCT	0.517													47	40					0	0	1	0	0
CARD10	29775	broad.mit.edu	37	22	37893028	37893028	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:37893028C>T	uc003asx.1	-	12	1948	c.1945G>A	c.(1945-1947)GAG>AAG	p.E649K	CARD10_uc003ast.1_RNA|CARD10_uc003asv.1_5'Flank|CARD10_uc011ank.1_5'Flank|CARD10_uc003asw.1_Missense_Mutation_p.E363K|CARD10_uc003asy.1_Missense_Mutation_p.E649K	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	649					activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					GGCCTCACCTCTCTTGGTTCC	0.602													79	169					0	0	1	0	0
CARD10	29775	broad.mit.edu	37	22	37903859	37903859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:37903859C>T	uc003asx.1	-	6	1171	c.1168G>A	c.(1168-1170)GAG>AAG	p.E390K	CARD10_uc003ast.1_RNA|CARD10_uc003asw.1_Missense_Mutation_p.E104K|CARD10_uc003asy.1_Missense_Mutation_p.E390K	NM_014550	NP_055365	Q9BWT7	CAR10_HUMAN	caspase recruitment domain protein 10	390	Potential.				activation of NF-kappaB-inducing kinase activity|protein complex assembly|regulation of apoptosis	CBM complex	receptor signaling complex scaffold activity			upper_aerodigestive_tract(1)|lung(1)|breast(1)|ovary(1)|prostate(1)|kidney(1)	6	Melanoma(58;0.0574)					TTCTCAATCTCCTCCAGTTGG	0.612													65	146					0	0	1	0	0
GGA1	26088	broad.mit.edu	37	22	38028043	38028043	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:38028043C>T	uc003atc.2	+	15	1934	c.1569C>T	c.(1567-1569)TTC>TTT	p.F523F	GGA1_uc003atd.2_Silent_p.F436F|GGA1_uc003ate.2_Silent_p.F519F|GGA1_uc003atf.2_Silent_p.F450F|SH3BP1_uc003atg.1_5'Flank	NM_013365	NP_037497	Q9UJY5	GGA1_HUMAN	golgi associated, gamma adaptin ear containing,	523	GAE.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|Golgi apparatus part	protein binding			breast(2)|ovary(1)	3	Melanoma(58;0.0574)					AGCACGGCTTCCGCATCCTCT	0.652													46	60					0	0	1	0	0
PICK1	9463	broad.mit.edu	37	22	38468552	38468552	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:38468552A>T	uc003auq.2	+	9	1015	c.625A>T	c.(625-627)AAG>TAG	p.K209*	PICK1_uc003aur.2_Nonsense_Mutation_p.K209*|PICK1_uc003aus.2_Nonsense_Mutation_p.K209*|PICK1_uc003aut.2_Nonsense_Mutation_p.K209*	NM_012407	NP_036539	Q9NRD5	PICK1_HUMAN	protein interacting with C kinase 1	209	AH.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|DNA methylation involved in embryo development|DNA methylation involved in gamete generation|monoamine transport|neuronal ion channel clustering|protein phosphorylation|receptor clustering|retrograde vesicle-mediated transport, Golgi to ER|synaptic transmission	cell junction|endocytic vesicle membrane|Golgi apparatus|perinuclear region of cytoplasm|presynaptic membrane	ATPase activity|metal ion binding|protein C-terminus binding|protein kinase C binding|receptor binding				0	Melanoma(58;0.045)					GGCTTTTGTGAAGTTCGCCGA	0.592													34	80					0	0	1	0	0
NPTXR	23467	broad.mit.edu	37	22	39218644	39218644	+	Silent	SNP	G	A	A	rs145163836		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:39218644G>A	uc003awk.2	-	5	1627	c.1473C>T	c.(1471-1473)TTC>TTT	p.F491F		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	491	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					TGCAGACATCGAAGGCAGCCT	0.622													11	23					0	0	1	0	0
APOBEC3B	9582	broad.mit.edu	37	22	39381963	39381963	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:39381963C>T	uc003awo.1	+	3	375	c.321C>T	c.(319-321)TTC>TTT	p.F107F	APOBEC3A_uc011aoc.1_Intron|APOBEC3B_uc003awp.1_Silent_p.F107F|APOBEC3B_uc003awq.1_RNA|APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_004900	NP_004891	Q9UH17	ABC3B_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	107					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					TGGCCGAATTCCTGTCTGAGC	0.582													161	253					0	0	1	0	0
SMCR7L	54471	broad.mit.edu	37	22	39908021	39908021	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:39908021C>T	uc003axx.2	+	4	810	c.312C>T	c.(310-312)ACC>ACT	p.T104T	SMCR7L_uc003axw.2_Silent_p.T104T|SMCR7L_uc010gxz.1_5'UTR|SMCR7L_uc003axy.2_5'UTR	NM_019008	NP_061881	Q9NQG6	SMC7L_HUMAN	hypothetical protein LOC54471	104						integral to membrane|mitochondrion				central_nervous_system(1)	1	Melanoma(58;0.04)					ACTCCTCCACCTTCGACACAG	0.488													53	97					0	0	1	0	0
ATF4	468	broad.mit.edu	37	22	39918129	39918130	+	Missense_Mutation	DNP	GG	AA	AA	rs146204295	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:39918129_39918130GG>AA	uc003axz.2	+	3	858_859	c.578_579GG>AA	c.(577-579)AGG>AAA	p.R193K	ATF4_uc011aol.1_Missense_Mutation_p.R105K|ATF4_uc003aya.2_Missense_Mutation_p.R193K	NM_182810	NP_877962	P18848	ATF4_HUMAN	activating transcription factor 4	193					cellular amino acid metabolic process|gluconeogenesis|positive regulation of transcription from RNA polymerase II promoter|response to endoplasmic reticulum stress|transcription from RNA polymerase II promoter	cytoplasm|plasma membrane	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Melanoma(58;0.04)					GAAGGAGATAGGAAGCCAGACT	0.49													25	45					0	0	1	0	0
XPNPEP3	63929	broad.mit.edu	37	22	41318338	41318338	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:41318338T>C	uc003azh.2	+	8	1149	c.1057T>C	c.(1057-1059)TTC>CTC	p.F353L	XPNPEP3_uc003azi.2_Missense_Mutation_p.F274L|XPNPEP3_uc011aoy.1_RNA	NM_022098	NP_071381	Q9NQH7	XPP3_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 3,	353					cellular process	mitochondrion	aminopeptidase activity|manganese ion binding|metallopeptidase activity				0						CGTCCCCAGGTTCACCGCACC	0.448													54	86					0	0	1	0	0
RANGAP1	5905	broad.mit.edu	37	22	41654018	41654018	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:41654018G>A	uc003azs.2	-	6	2178	c.708C>T	c.(706-708)CCC>CCT	p.P236P	RANGAP1_uc003azt.2_Silent_p.P236P|RANGAP1_uc003azu.2_Silent_p.P236P|RANGAP1_uc011aoz.1_Silent_p.P181P	NM_002883	NP_002874	P46060	RAGP1_HUMAN	Ran GTPase activating protein 1	236	LRR 4.				mitotic prometaphase|signal transduction	condensed chromosome kinetochore|cytosol|nuclear membrane|nuclear pore|soluble fraction|spindle pole	protein binding|Ran GTPase activator activity				0						CCCGCAGCAGGGGGTTGACAG	0.627													33	67					0	0	1	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41742206	41742206	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:41742206C>T	uc003azw.2	+	14	1875	c.1659C>T	c.(1657-1659)CTC>CTT	p.L553L	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	569					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						TCACCTTCCTCTGCGAGGTAC	0.642													19	35					0	0	1	0	0
TCF20	6942	broad.mit.edu	37	22	42607229	42607229	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:42607229G>A	uc003bcj.1	-	1	4217	c.4083C>T	c.(4081-4083)TCC>TCT	p.S1361S	TCF20_uc003bck.1_Silent_p.S1361S|TCF20_uc003bnt.2_Silent_p.S1361S	NM_005650	NP_005641	Q9UGU0	TCF20_HUMAN	transcription factor 20 isoform 1	1361					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(4)|skin(1)	5						TAATATTTGGGGATGTAATCT	0.502													25	49					0	0	1	0	0
CYB5R3	1727	broad.mit.edu	37	22	43032820	43032820	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:43032820G>A	uc003bcz.2	-	2	138	c.54C>T	c.(52-54)TTC>TTT	p.F18F	CYB5R3_uc010gzc.1_5'UTR|CYB5R3_uc003bcw.2_Silent_p.F8F|CYB5R3_uc011aps.1_Silent_p.F51F|CYB5R3_uc003bcy.2_5'UTR|CYB5R3_uc003bcx.2_5'UTR	NM_000398	NP_000389	P00387	NB5R3_HUMAN	cytochrome b5 reductase 3 isoform m	18					blood circulation|cholesterol biosynthetic process|water-soluble vitamin metabolic process	endoplasmic reticulum membrane|hemoglobin complex|mitochondrial outer membrane	cytochrome-b5 reductase activity			skin(1)	1					NADH(DB00157)	GACTGTACAGGAACCAGACTG	0.517													17	35					0	0	1	0	0
SCUBE1	80274	broad.mit.edu	37	22	43735241	43735241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:43735241C>T	uc003bdt.1	-	2	177	c.89G>A	c.(88-90)GGG>GAG	p.G30E	SCUBE1_uc003bdu.1_Missense_Mutation_p.G30E	NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	30					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GTCGACTGACCCTGTGGGTAG	0.592													22	44					0	0	1	0	0
PARVG	64098	broad.mit.edu	37	22	44585089	44585089	+	Silent	SNP	C	A	A	rs149519388		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:44585089C>A	uc011aqe.1	+	6	767	c.343C>A	c.(343-345)CGG>AGG	p.R115R	PARVG_uc003bep.2_Silent_p.R115R|PARVG_uc011aqf.1_Silent_p.R115R|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	115	CH 1.				cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				GGCCGTGAACCGGAGTCTGCA	0.647													3	79					1	1	1	1	0
KIAA1644	85352	broad.mit.edu	37	22	44681474	44681474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:44681474C>T	uc003bet.2	-	4	566	c.433G>A	c.(433-435)GAC>AAC	p.D145N		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	145	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				CGCCGGGGGTCCTGTTTCATC	0.667													62	115					0	0	1	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45128247	45128247	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:45128247C>T	uc003bfd.2	+	6	803	c.531C>T	c.(529-531)ATC>ATT	p.I177I	PRR5_uc003bew.1_Silent_p.I168I|PRR5_uc003bex.1_Silent_p.I82I|PRR5_uc010gzt.1_Silent_p.I200I|PRR5_uc010gzu.1_Silent_p.I141I|PRR5_uc003bey.1_Silent_p.I168I|PRR5_uc003bez.1_Silent_p.I82I|PRR5-ARHGAP8_uc003bfc.2_Intron|PRR5-ARHGAP8_uc011aqi.1_Intron|PRR5-ARHGAP8_uc011aqj.1_Intron|PRR5_uc003bfa.1_Silent_p.I70I|PRR5_uc003bfb.1_Silent_p.I177I|PRR5_uc003bfe.1_RNA|PRR5-ARHGAP8_uc003bfg.1_Intron|PRR5_uc003bfh.1_Silent_p.I76I	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						CCCCTGCCATCGTGCAGATGC	0.577													17	34					0	0	1	0	0
WNT7B	7477	broad.mit.edu	37	22	46372612	46372612	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:46372612C>T	uc003bgo.2	-	1	397	c.23G>A	c.(22-24)TGG>TAG	p.W8*		NM_058238	NP_478679	P56706	WNT7B_HUMAN	wingless-type MMTV integration site family,	8					activation of JUN kinase activity|anterior/posterior pattern formation|axis specification|axonogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|central nervous system vasculogenesis|chorio-allantoic fusion|developmental growth involved in morphogenesis|embryonic placenta morphogenesis|establishment or maintenance of polarity of embryonic epithelium|fibroblast proliferation|forebrain regionalization|inner medullary collecting duct development|lens fiber cell development|lobar bronchus development|lung epithelium development|lung morphogenesis|lung-associated mesenchyme development|mammary gland epithelium development|metanephric collecting duct development|metanephric loop of Henle development|metanephros morphogenesis|negative regulation of smoothened signaling pathway|outer medullary collecting duct development|oxygen homeostasis|positive regulation of JNK cascade|positive regulation of osteoblast differentiation|renal inner medulla development|renal outer medulla development|stem cell proliferation|synapse organization|trachea cartilage morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|frizzled binding|signal transducer activity			lung(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|LUAD - Lung adenocarcinoma(64;0.247)		GTAGAAAATCCACTTGCGAAA	0.667													15	39					0	0	1	0	0
PKDREJ	10343	broad.mit.edu	37	22	46657079	46657079	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:46657079G>A	uc003bhh.2	-	1	2141	c.2141C>T	c.(2140-2142)GCT>GTT	p.A714V		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	714	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		CAAAACGGAAGCTACTATATA	0.393													44	50					0	0	1	0	0
GTSE1	51512	broad.mit.edu	37	22	46704370	46704370	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:46704370T>C	uc011aqy.1	+	4	504	c.292T>C	c.(292-294)TTC>CTC	p.F98L	GTSE1_uc011aqz.1_5'UTR	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	79					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		CGGGGAGAAGTTCGTGGAGGT	0.557													59	135					0	0	1	0	0
TBC1D22A	25771	broad.mit.edu	37	22	47274581	47274581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:47274581C>T	uc003bib.2	+	5	805	c.670C>T	c.(670-672)CCT>TCT	p.P224S	TBC1D22A_uc010haf.2_Missense_Mutation_p.P194S|TBC1D22A_uc003bic.2_Missense_Mutation_p.P165S|TBC1D22A_uc003bie.2_Missense_Mutation_p.P146S|TBC1D22A_uc003bid.2_Intron|TBC1D22A_uc010hag.2_RNA|TBC1D22A_uc003bif.2_Missense_Mutation_p.P177S	NM_014346	NP_055161	Q8WUA7	TB22A_HUMAN	TBC1 domain family, member 22A	224	Rab-GAP TBC.					intracellular	protein homodimerization activity|Rab GTPase activator activity			ovary(1)	1		all_cancers(38;4.44e-05)|all_epithelial(38;0.000507)|Breast(42;0.0488)|all_lung(38;0.0682)|Ovarian(80;0.0731)|all_neural(38;0.0966)|Glioma(61;0.222)|Lung SC(80;0.236)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0347)|BRCA - Breast invasive adenocarcinoma(115;0.231)		GTCCGGAATCCCTAAGCCAGT	0.527													41	87					0	0	1	0	0
PLXNB2	23654	broad.mit.edu	37	22	50728070	50728071	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:50728070_50728071GG>AA	uc003bkv.3	-	3	1049_1050	c.943_944CC>TT	c.(943-945)CCG>TTG	p.P315L		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	315	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CTTGTCCAGCGGGAACAGGCAG	0.658													29	80					0	0	1	0	0
LMF2	91289	broad.mit.edu	37	22	50944110	50944110	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr22:50944110C>T	uc003blp.2	-	6	940	c.909G>A	c.(907-909)ACG>ACA	p.T303T	LMF2_uc010hba.2_Silent_p.T125T|LMF2_uc003blo.2_Silent_p.T278T|NCAPH2_uc003blq.3_5'Flank|NCAPH2_uc003blv.2_5'Flank|NCAPH2_uc003blr.3_5'Flank|NCAPH2_uc010hbb.2_5'Flank|NCAPH2_uc003blu.3_5'Flank|NCAPH2_uc003bls.3_5'Flank|NCAPH2_uc003blt.3_5'Flank|NCAPH2_uc003blw.3_5'Flank|NCAPH2_uc003blx.3_5'Flank|NCAPH2_uc003bly.3_5'Flank	NM_033200	NP_149977	Q9BU23	LMF2_HUMAN	lipase maturation factor 2	303						endoplasmic reticulum membrane|integral to membrane				breast(1)	1		all_cancers(38;1.31e-09)|all_epithelial(38;1.81e-08)|all_lung(38;0.000817)|Breast(42;0.00387)|Lung NSC(38;0.0124)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CACAGGTGGCCGTCTTCTTGC	0.642													17	40					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1394015	1394015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:1394015C>T	uc003boz.2	+	12	1639	c.1372C>T	c.(1372-1374)CTC>TTC	p.L458F	CNTN6_uc011asj.1_Missense_Mutation_p.L386F|CNTN6_uc003bpa.2_Missense_Mutation_p.L458F	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	458	Ig-like C2-type 5.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TAGAATATTTCTCTTGGAGGA	0.323													15	31					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1424775	1424775	+	Silent	SNP	T	G	G	rs141777430		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:1424775T>G	uc003boz.2	+	18	2583	c.2316T>G	c.(2314-2316)TCT>TCG	p.S772S	CNTN6_uc011asj.1_Silent_p.S700S|CNTN6_uc003bpa.2_Silent_p.S772S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	772	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TCCCACTGTCTCCCTTTGAAG	0.463													28	64					0	0	1	0	0
CNTN6	27255	broad.mit.edu	37	3	1427442	1427442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:1427442C>T	uc003boz.2	+	20	2932	c.2665C>T	c.(2665-2667)CCC>TCC	p.P889S	CNTN6_uc011asj.1_Missense_Mutation_p.P817S|CNTN6_uc003bpa.2_Missense_Mutation_p.P889S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	889	Fibronectin type-III 3.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TGGGACAGGGCCCTCAAGCCC	0.458													58	136					0	0	1	0	0
IL5RA	3568	broad.mit.edu	37	3	3144438	3144438	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:3144438C>T	uc011ask.1	-	5	793	c.149G>A	c.(148-150)TGG>TAG	p.W50*	IL5RA_uc010hbq.2_Nonsense_Mutation_p.W50*|IL5RA_uc010hbr.2_Nonsense_Mutation_p.W50*|IL5RA_uc010hbs.2_Nonsense_Mutation_p.W50*|IL5RA_uc011asl.1_Nonsense_Mutation_p.W50*|IL5RA_uc011asm.1_Nonsense_Mutation_p.W50*|IL5RA_uc010hbt.2_Nonsense_Mutation_p.W50*|IL5RA_uc011asn.1_Nonsense_Mutation_p.W50*|IL5RA_uc010hbu.2_Nonsense_Mutation_p.W50*	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	50	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		ATTTGGTTTCCATTGTAAAAG	0.338													23	28					0	0	1	0	0
LRRN1	57633	broad.mit.edu	37	3	3887761	3887761	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:3887761G>A	uc003bpt.3	+	2	2197	c.1436G>A	c.(1435-1437)AGT>AAT	p.S479N	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	479	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TACAAGCTAAGTAGCGAAGGT	0.448													47	81					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4725174	4725174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:4725174C>T	uc003bqa.2	+	27	3587	c.3239C>T	c.(3238-3240)GCC>GTC	p.A1080V	ITPR1_uc010hca.1_Missense_Mutation_p.A1065V|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.A11V	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1089	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GTGTCAGGGGCCCTGCAGCTC	0.597													42	90					0	0	1	0	0
ITPR1	3708	broad.mit.edu	37	3	4725214	4725214	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:4725214G>A	uc003bqa.2	+	27	3627	c.3279G>A	c.(3277-3279)GAG>GAA	p.E1093E	ITPR1_uc010hca.1_Silent_p.E1078E|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Silent_p.E24E	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1102	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		AGAGGCAGGAGGTGCTCCAGG	0.567													20	51					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7188172	7188172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:7188172G>A	uc003bqm.2	+	2	827	c.553G>A	c.(553-555)GAG>AAG	p.E185K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.E185K|GRM7_uc003bql.2_Missense_Mutation_p.E185K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	185	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AACGGCACCCGAGCTAAGTGA	0.512													63	99					0	0	1	0	0
TTLL3	26140	broad.mit.edu	37	3	9871027	9871028	+	Missense_Mutation	DNP	GG	AA	AA	rs141851512	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:9871027_9871028GG>AA	uc003btg.2	+	10	1718_1719	c.1502_1503GG>AA	c.(1501-1503)CGG>CAA	p.R501Q	ARPC4_uc003btc.1_Missense_Mutation_p.R145Q|TTLL3_uc003btd.3_Missense_Mutation_p.R468Q|TTLL3_uc003btf.3_Missense_Mutation_p.R233Q|TTLL3_uc010hco.1_Missense_Mutation_p.R437Q|TTLL3_uc003bth.3_Missense_Mutation_p.R289Q|TTLL3_uc011atj.1_Missense_Mutation_p.R437Q|TTLL3_uc003btj.3_Missense_Mutation_p.R289Q|TTLL3_uc003bti.3_Missense_Mutation_p.R289Q	NM_001025930	NP_001021100	Q9Y4R7	TTLL3_HUMAN	tubulin tyrosine ligase-like family, member 3	501	TTL.				axoneme assembly|cilium assembly|protein polyglycylation	cilium axoneme|cytoplasm|microtubule	protein-glycine ligase activity, initiating|tubulin-tyrosine ligase activity			large_intestine(2)	2	Medulloblastoma(99;0.227)					GTCATTGACCGGATGCTGGACC	0.609													46	121					0	0	1	0	0
CRELD1	78987	broad.mit.edu	37	3	9982706	9982706	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:9982706T>C	uc003bug.2	+	6	751	c.633T>C	c.(631-633)TGT>TGC	p.C211C	CIDEC_uc003bto.2_Intron|CRELD1_uc003buf.2_Silent_p.C211C|CRELD1_uc003buh.2_Silent_p.C211C|CRELD1_uc003bui.2_Silent_p.C211C|CRELD1_uc003buj.2_RNA	NM_001077415	NP_001070883	Q96HD1	CREL1_HUMAN	cysteine-rich with EGF-like domains 1 isoform 3	211	FU 1.|Extracellular (Potential).				cardiac septum development|endocardial cushion development	integral to membrane	calcium ion binding			ovary(1)	1						ATCTGGTATGTTCGGGTAGGT	0.632													28	89					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10280494	10280494	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:10280494G>A	uc003bve.1	+	12	1612	c.1536G>A	c.(1534-1536)TGG>TGA	p.W512*		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	512					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						TGCTCCCTTGGAGTGGGCTTT	0.562													45	73					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10420054	10420054	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:10420054G>A	uc003bvt.2	-	10	1522	c.1083C>T	c.(1081-1083)CCC>CCT	p.P361P	ATP2B2_uc003bvv.2_Silent_p.P316P|ATP2B2_uc003bvw.2_Silent_p.P316P|ATP2B2_uc010hdo.2_Silent_p.P66P	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	361	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CACTCTTGAGGGGCTGCATCT	0.607													35	79					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10442697	10442697	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:10442697G>A	uc003bvt.2	-	5	1160	c.721C>T	c.(721-723)CTA>TTA	p.L241L	ATP2B2_uc003bvv.2_Silent_p.L241L|ATP2B2_uc003bvw.2_Silent_p.L241L|ATP2B2_uc010hdp.2_Silent_p.L241L|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	241	Cytoplasmic (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						TCTCCAGTTAGGGAGCTTTCA	0.597													30	72					0	0	1	0	0
ATP2B2	491	broad.mit.edu	37	3	10452414	10452414	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:10452414G>A	uc003bvt.2	-	3	724	c.285C>T	c.(283-285)TTC>TTT	p.F95F	ATP2B2_uc003bvv.2_Silent_p.F95F|ATP2B2_uc003bvw.2_Silent_p.F95F|ATP2B2_uc010hdp.2_Silent_p.F95F|ATP2B2_uc010hdo.2_5'UTR	NM_001001331	NP_001001331	Q01814	AT2B2_HUMAN	plasma membrane calcium ATPase 2 isoform 1	95	Helical; (Potential).				ATP biosynthetic process|cytosolic calcium ion homeostasis|platelet activation	cytosol|integral to membrane|plasma membrane	ATP binding|ATP binding|calcium ion binding|calcium-transporting ATPase activity|calcium-transporting ATPase activity|calmodulin binding|calmodulin binding|metal ion binding|PDZ domain binding|protein C-terminus binding			ovary(3)|skin(2)|central_nervous_system(1)	6						CGAGCTGCAGGAAGGTTTTTG	0.562													170	277					0	0	1	0	0
NUP210	23225	broad.mit.edu	37	3	13379373	13379373	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:13379373G>A	uc003bxv.1	-	26	3599	c.3516C>T	c.(3514-3516)ATC>ATT	p.I1172I		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1172	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TGGGGGCGCGGATCCTCACGG	0.642													13	35					0	0	1	0	0
HDAC11	79885	broad.mit.edu	37	3	13525016	13525016	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:13525016G>A	uc003bxy.2	+	3	337	c.204G>A	c.(202-204)GAG>GAA	p.E68E	HDAC11_uc010heb.2_Silent_p.E40E|HDAC11_uc011aux.1_Intron|HDAC11_uc003bxz.2_Silent_p.E40E|HDAC11_uc011auy.1_Silent_p.E40E	NM_024827	NP_079103	Q96DB2	HDA11_HUMAN	histone deacetylase 11 isoform 1	68	Histone deacetylase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex|plasma membrane	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription factor binding			ovary(2)	2						AGGCCTCGGAGGAGGACCTGC	0.637													53	103					0	0	1	0	0
GRIP2	80852	broad.mit.edu	37	3	14552972	14552972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:14552972C>T	uc011avi.1	-	16	2030	c.2030G>A	c.(2029-2031)CGA>CAA	p.R677Q	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Missense_Mutation_p.R208Q	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	579	PDZ 5.				synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GGGCTCCCCTCGTTTCCTGCT	0.483													18	29					0	0	1	0	0
C3orf20	84077	broad.mit.edu	37	3	14745851	14745851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:14745851G>A	uc003byy.2	+	7	1290	c.886G>A	c.(886-888)GAA>AAA	p.E296K	C3orf20_uc003byz.2_Missense_Mutation_p.E174K|C3orf20_uc003bza.2_Missense_Mutation_p.E174K|C3orf20_uc003byx.1_Intron	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	296						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						CAGAGAAGCTGAAAGGGCCAC	0.498													15	33					0	0	1	0	0
FGD5	152273	broad.mit.edu	37	3	14861689	14861689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:14861689G>A	uc003bzc.2	+	1	1221	c.1111G>A	c.(1111-1113)GGT>AGT	p.G371S	FGD5_uc011avk.1_Missense_Mutation_p.G371S	NM_152536	NP_689749	Q6ZNL6	FGD5_HUMAN	FYVE, RhoGEF and PH domain containing 5	371					actin cytoskeleton organization|filopodium assembly|regulation of Cdc42 GTPase activity|regulation of cell shape	cytoskeleton|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(3)|kidney(1)|pancreas(1)	5						ATCAGCGAAAGGTTTAGAATC	0.562													20	49					0	0	1	0	0
GALNTL2	117248	broad.mit.edu	37	3	16254193	16254193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:16254193C>T	uc003car.3	+	6	1790	c.1315C>T	c.(1315-1317)CGC>TGC	p.R439C	GALNTL2_uc003caq.3_Missense_Mutation_p.R172C	NM_054110	NP_473451	Q8N3T1	GLTL2_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	439	Lumenal (Potential).					Golgi membrane|integral to membrane|transport vesicle	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(1)	1						GAACAGGGTTCGCATTGCTGA	0.547													34	87					0	0	1	0	0
EFHB	151651	broad.mit.edu	37	3	19959780	19959780	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:19959780C>T	uc003cbl.3	-	4	1317	c.1121G>A	c.(1120-1122)GGA>GAA	p.G374E	EFHB_uc003cbm.2_Missense_Mutation_p.G244E	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	374					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						TTTTGGTAATCCTGGTGCTTG	0.373													142	338					0	0	1	0	0
SGOL1	151648	broad.mit.edu	37	3	20212610	20212610	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:20212610T>C	uc003cbs.2	-	7	1584	c.1397A>G	c.(1396-1398)AAA>AGA	p.K466R	SGOL1_uc003cbr.2_Missense_Mutation_p.K197R|SGOL1_uc010hfa.2_Intron|SGOL1_uc003cbt.2_Missense_Mutation_p.K214R|SGOL1_uc003cbu.2_Missense_Mutation_p.K466R|SGOL1_uc003cbv.2_Missense_Mutation_p.K214R|SGOL1_uc003cbw.2_Missense_Mutation_p.K197R|SGOL1_uc003cbx.2_Missense_Mutation_p.K214R|SGOL1_uc003cby.2_Missense_Mutation_p.K197R|SGOL1_uc003cbz.2_Missense_Mutation_p.K466R|SGOL1_uc003cca.2_Missense_Mutation_p.K466R|SGOL1_uc003ccb.2_Missense_Mutation_p.K214R|SGOL1_uc003ccc.2_Missense_Mutation_p.K197R	NM_001012410	NP_001012410	Q5FBB7	SGOL1_HUMAN	shugoshin-like 1 isoform A2	466					attachment of spindle microtubules to kinetochore|cell division|centriole-centriole cohesion|meiotic chromosome segregation|mitotic prometaphase	centrosome|condensed chromosome kinetochore|cytosol|mitotic cohesin complex|spindle pole	protein binding				0						TGGGCTTGCTTTATTCTTTTT	0.458													29	30					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32933161	32933161	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:32933161A>T	uc003cff.2	+	4	2528	c.2465A>T	c.(2464-2466)GAA>GTA	p.E822V		NM_001039111	NP_001034200	Q2Q1W2	LIN41_HUMAN	tripartite motif-containing 71	822	NHL 5.				multicellular organismal development	cytoplasm	zinc ion binding			ovary(2)|large_intestine(1)	3						CAGATGTTTGAATCCAACGGC	0.592													101	214					0	0	1	0	0
GLB1	2720	broad.mit.edu	37	3	33065796	33065796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:33065796G>A	uc003cfi.1	-	11	1207	c.1090C>T	c.(1090-1092)CCT>TCT	p.P364S	GLB1_uc003cfh.1_Missense_Mutation_p.P334S|GLB1_uc003cfj.1_Missense_Mutation_p.P233S|GLB1_uc011axk.1_Missense_Mutation_p.P412S	NM_000404	NP_000395	P16278	BGAL_HUMAN	galactosidase, beta 1 isoform a preproprotein	364					carbohydrate metabolic process	lysosome|perinuclear region of cytoplasm	beta-galactosidase activity|cation binding|protein binding			large_intestine(1)	1		Melanoma(143;0.104)				GGAGGGATAGGACCTTCTGGT	0.318													8	13					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35723349	35723349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:35723349G>A	uc003cgb.2	+	3	370	c.106G>A	c.(106-108)GAA>AAA	p.E36K	ARPP21_uc003cga.2_Missense_Mutation_p.E36K|ARPP21_uc011axy.1_Missense_Mutation_p.E36K|ARPP21_uc003cfz.2_RNA|ARPP21_uc003cgc.2_Missense_Mutation_p.E36K|ARPP21_uc003cgd.2_Missense_Mutation_p.E36K|ARPP21_uc011axx.1_RNA|ARPP21_uc003cge.2_Missense_Mutation_p.E36K	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	36	Potential.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AAGTCTGGATGAAGAGGAGAA	0.473													22	42					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36778828	36778828	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:36778828G>A	uc003cgi.2	-	2	1814	c.1323C>T	c.(1321-1323)GAC>GAT	p.D441D		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	441	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CTATGATGGCGTCAAAAAGGT	0.507													31	59					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36874038	36874038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:36874038C>T	uc003cgj.2	-	12	5556	c.5254G>A	c.(5254-5256)GAG>AAG	p.E1752K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2302	Potential.				DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TTTTCAAACTCCTCCGGGTAG	0.527													16	37					0	0	1	0	0
SLC22A14	9389	broad.mit.edu	37	3	38348792	38348792	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:38348792C>T	uc010hhc.1	+	3	606	c.564C>T	c.(562-564)ATC>ATT	p.I188I	SLC22A14_uc003cia.2_Silent_p.I188I|SLC22A14_uc003cib.2_Silent_p.I188I|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	188	Helical; (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		CTGCACAGATCATGTTCATGG	0.552													55	112					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38622518	38622519	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:38622518_38622519GG>AA	uc003cio.2	-	17	3325_3326	c.3131_3132CC>TT	c.(3130-3132)CCC>CTT	p.P1044L	SCN5A_uc003cin.2_Missense_Mutation_p.P1044L|SCN5A_uc003cil.3_Missense_Mutation_p.P1044L|SCN5A_uc010hhi.2_Missense_Mutation_p.P1044L|SCN5A_uc010hhk.2_Missense_Mutation_p.P1044L|SCN5A_uc011ayr.1_Missense_Mutation_p.P1044L|SCN5A_uc010hhj.1_Missense_Mutation_p.P655L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1044					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCACACACACGGGCTCTGGATC	0.639													17	29					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38645571	38645571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:38645571G>A	uc003cio.2	-	12	1716	c.1522C>T	c.(1522-1524)CAT>TAT	p.H508Y	SCN5A_uc003cin.2_Missense_Mutation_p.H508Y|SCN5A_uc003cil.3_Missense_Mutation_p.H508Y|SCN5A_uc010hhi.2_Missense_Mutation_p.H508Y|SCN5A_uc010hhk.2_Missense_Mutation_p.H508Y|SCN5A_uc011ayr.1_Missense_Mutation_p.H508Y|SCN5A_uc010hhj.1_Missense_Mutation_p.H119Y	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	508					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	AGGCTGAGATGATTCTAAGGG	0.557													5	9					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38739327	38739327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:38739327C>T	uc003ciq.2	-	27	5384	c.5384G>A	c.(5383-5385)GGA>GAA	p.G1795E		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1795					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GATCTTATCTCCAGGGACCAA	0.483													26	44					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38802817	38802817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:38802817G>A	uc003ciq.2	-	6	749	c.749C>T	c.(748-750)ACC>ATC	p.T250I		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	250	Helical; Name=S5 of repeat I; (Potential).|I.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGTGAGGATGGTCACATCAGC	0.498													16	47					0	0	1	0	0
SCN11A	11280	broad.mit.edu	37	3	38889119	38889119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:38889119C>T	uc011ays.1	-	26	4641	c.4442G>A	c.(4441-4443)CGA>CAA	p.R1481Q		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1481	IV.|Helical; Voltage-sensor; Name=S4 of repeat IV; (By similarity).				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CCTGATTCCTCGTGCAGCCCG	0.488													17	39					0	0	1	0	0
TTC21A	199223	broad.mit.edu	37	3	39178409	39178409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:39178409G>A	uc003cjc.2	+	24	3313	c.3136G>A	c.(3136-3138)GAA>AAA	p.E1046K	TTC21A_uc003cje.2_Missense_Mutation_p.E1047K|TTC21A_uc003cjd.2_RNA|TTC21A_uc011ayx.1_Missense_Mutation_p.E998K|TTC21A_uc003cjf.2_Missense_Mutation_p.E167K	NM_145755	NP_665698	Q8NDW8	TT21A_HUMAN	tetratricopeptide repeat domain 21A isoform 2	1046	TPR 16.						binding			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0588)|Kidney(284;0.0738)		GCAGCCCAACGAAGCCTTAAA	0.403													47	118					0	0	1	0	0
XIRP1	165904	broad.mit.edu	37	3	39226579	39226579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:39226579G>A	uc003cjk.1	-	2	4579	c.4358C>T	c.(4357-4359)TCC>TTC	p.S1453F	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.S136F	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1453							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCCTTGGTGGGAACCTTCCAT	0.637													46	85					0	0	1	0	0
CCR8	1237	broad.mit.edu	37	3	39374842	39374842	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:39374842C>T	uc010hhr.2	+	2	1158	c.1020C>T	c.(1018-1020)TCC>TCT	p.S340S	CCR8_uc003cjm.2_Silent_p.S257S	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	340	Cytoplasmic (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		AGTCATCATCCTGCCAGCAGC	0.338													35	38					0	0	1	0	0
FYCO1	79443	broad.mit.edu	37	3	46009090	46009090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:46009090G>A	uc003cpb.3	-	8	1942	c.1736C>T	c.(1735-1737)TCC>TTC	p.S579F	FYCO1_uc011bal.1_Missense_Mutation_p.S579F	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	579					transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		TTGCAGACTGGAGTTCACAGG	0.632													35	77					0	0	1	0	0
FYCO1	79443	broad.mit.edu	37	3	46009799	46009799	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:46009799T>C	uc003cpb.3	-	8	1233	c.1027A>G	c.(1027-1029)ATG>GTG	p.M343V	FYCO1_uc011bal.1_Missense_Mutation_p.M343V	NM_024513	NP_078789	Q9BQS8	FYCO1_HUMAN	FYVE and coiled-coil domain containing 1	343					transport	integral to membrane	metal ion binding|protein binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00147)|KIRC - Kidney renal clear cell carcinoma(197;0.0272)|Kidney(197;0.0323)		GGCTGCAGCATGGACTCCAGC	0.602													33	98					0	0	1	0	0
TDGF1	6997	broad.mit.edu	37	3	46620721	46620721	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:46620721G>A	uc003cpv.2	+	3	369	c.89_splice	c.e3-1	p.G30_splice	LRRC2_uc003cpu.3_Intron	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1						activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TTGTCGTTAAGGGCTGGGCCA	0.488													22	35					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47049645	47049645	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:47049645C>T	uc003cqp.2	+	50	7867	c.7688C>T	c.(7687-7689)ACT>ATT	p.T2563I	NBEAL2_uc010hjm.1_Missense_Mutation_p.T1940I|NBEAL2_uc010hjn.1_Missense_Mutation_p.T929I|NBEAL2_uc010hjo.1_Missense_Mutation_p.T123I	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	2563	WD 4.						binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		GCCATCAGCACTGAACTTGAC	0.602													23	47					0	0	1	0	0
SETD2	29072	broad.mit.edu	37	3	47163857	47163857	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:47163857G>A	uc003cqs.2	-	3	2322	c.2269C>T	c.(2269-2271)CAA>TAA	p.Q757*	SETD2_uc003cqv.2_Nonsense_Mutation_p.Q746*	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	757					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		AGTTTATCTTGGTGTGGTGAC	0.398			N|F|S|Mis		clear cell renal carcinoma								78	168					0	0	1	0	0
PTPN23	25930	broad.mit.edu	37	3	47452835	47452835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:47452835G>A	uc003crf.1	+	20	3643	c.3547G>A	c.(3547-3549)GGT>AGT	p.G1183S	PTPN23_uc011baw.1_Missense_Mutation_p.G1148S|PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Missense_Mutation_p.G1053S|uc003cri.2_5'Flank	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	1183					cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGCCTTTCGGGGTCAGCTGGG	0.652													14	34					0	0	1	0	0
CDC25A	993	broad.mit.edu	37	3	48222259	48222259	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:48222259C>G	uc003csh.1	-	6	865	c.501G>C	c.(499-501)GAG>GAC	p.E167D	CDC25A_uc003csi.1_Intron	NM_001789	NP_001780	P30304	MPIP1_HUMAN	cell division cycle 25A isoform a	167					cell cycle checkpoint|cell division|cell proliferation|cellular response to UV|DNA replication|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mitosis|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|kidney(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000685)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		GATCTTTACCCTCCTGGAGTC	0.483													57	102					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48451458	48451458	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:48451458C>T	uc003csw.2	-	32	5904	c.5634G>A	c.(5632-5634)GAG>GAA	p.E1878E	PLXNB1_uc003cst.2_Silent_p.E328E|PLXNB1_uc003csu.2_Silent_p.E1695E|PLXNB1_uc003csx.2_Silent_p.E1878E	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	1878	Cytoplasmic (Potential).				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGATGCCCCCCTCATCTACAT	0.692													20	40					0	0	1	0	0
PLXNB1	5364	broad.mit.edu	37	3	48461454	48461454	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:48461454G>A	uc003csw.2	-	11	2511	c.2241C>T	c.(2239-2241)TCC>TCT	p.S747S	PLXNB1_uc003csu.2_Intron|PLXNB1_uc003csx.2_Silent_p.S747S|PLXNB1_uc010hjx.1_Intron	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	747	Extracellular (Potential).|Pro-rich.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGAGCCAGGGGAAGATATGG	0.652													12	19					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48619375	48619375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:48619375C>T	uc003ctz.2	-	47	4638	c.4637G>A	c.(4636-4638)GGA>GAA	p.G1546E	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1546	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AACAGCAGGTCCCTGAAAACA	0.493													100	172					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48623831	48623831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:48623831C>T	uc003ctz.2	-	26	3485	c.3484G>A	c.(3484-3486)GTT>ATT	p.V1162I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1162	Nonhelical region (NC1).|VWFA 2.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ACTAGCAGAACCATCACCCCT	0.582													116	186					0	0	1	0	0
COL7A1	1294	broad.mit.edu	37	3	48629639	48629639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:48629639G>A	uc003ctz.2	-	9	1137	c.1136C>T	c.(1135-1137)TCA>TTA	p.S379L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	379	Nonhelical region (NC1).|Fibronectin type-III 2.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CAGCAACACTGAACCCTGCCC	0.647													58	91					0	0	1	0	0
CELSR3	1951	broad.mit.edu	37	3	48696909	48696909	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:48696909G>A	uc003cul.2	-	1	3440	c.3159C>T	c.(3157-3159)ATC>ATT	p.I1053I	CELSR3_uc003cuf.1_Silent_p.I1123I	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1053	Extracellular (Potential).|Cadherin 7.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CCATCACCTGGATACTGACTG	0.557													125	225					0	0	1	0	0
P4HTM	54681	broad.mit.edu	37	3	49028019	49028019	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49028019C>T	uc003cvg.2	+	1	679	c.330C>T	c.(328-330)CCC>CCT	p.P110P	P4HTM_uc003cvh.2_Silent_p.P110P	NM_177939	NP_808808	Q9NXG6	P4HTM_HUMAN	hypoxia-inducible factor prolyl 4-hydroxylase	110	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			skin(1)|pancreas(1)	2					Vitamin C(DB00126)	CCTTAGGTCCCCTCACCCGGC	0.726													8	10					0	0	1	0	0
QARS	5859	broad.mit.edu	37	3	49139280	49139280	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49139280G>A	uc003cvx.2	-	8	689	c.684C>T	c.(682-684)GCC>GCT	p.A228A	QARS_uc011bcc.1_5'Flank|QARS_uc011bcd.1_Silent_p.A83A|QARS_uc003cvy.2_Silent_p.A83A|QARS_uc011bce.1_Silent_p.A217A|QARS_uc011bcf.1_Silent_p.A228A	NM_005051	NP_005042	P47897	SYQ_HUMAN	glutaminyl-tRNA synthetase	228					glutaminyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|glutamine-tRNA ligase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)	L-Glutamine(DB00130)	GGAACTTAAGGGCCTCCCCCC	0.557													9	26					0	0	1	0	0
LAMB2	3913	broad.mit.edu	37	3	49163917	49163917	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49163917G>A	uc003cwe.2	-	16	2331	c.2032C>T	c.(2032-2034)CCT>TCT	p.P678S	LAMB2_uc003cwf.1_Missense_Mutation_p.P678S	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	678	Laminin IV type B.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		ACAGGATTAGGAAATATCAAG	0.577													24	68					0	0	1	0	0
LAMB2	3913	broad.mit.edu	37	3	49169764	49169764	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49169764G>A	uc003cwe.2	-	3	623	c.324C>T	c.(322-324)ATC>ATT	p.I108I	LAMB2_uc003cwf.1_Silent_p.I108I	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	108	Laminin N-terminal.				cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CTACATTCTGGATGCGATGGC	0.582													43	71					0	0	1	0	0
USP4	7375	broad.mit.edu	37	3	49362169	49362169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49362169C>T	uc003cwq.2	-	6	740	c.661G>A	c.(661-663)GAT>AAT	p.D221N	USP4_uc003cwr.2_Missense_Mutation_p.D221N	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	221					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		CATGTGCCATCTTCATTTTGA	0.443													30	76					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49699004	49699004	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49699004G>A	uc003cxe.3	+	6	9840	c.9726G>A	c.(9724-9726)AAG>AAA	p.K3242K		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3242					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AACTGACCAAGGACAGCACCT	0.582													48	142					0	0	1	0	0
RNF123	63891	broad.mit.edu	37	3	49751367	49751367	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49751367C>T	uc003cxh.2	+	30	2948	c.2862C>T	c.(2860-2862)CTC>CTT	p.L954L	RNF123_uc003cxi.2_RNA	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	954						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		TGAGGAACCTCCTGGCGCCCT	0.672													35	65					0	0	1	0	0
CAMKV	79012	broad.mit.edu	37	3	49897956	49897956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49897956C>T	uc003cxt.1	-	9	995	c.802G>A	c.(802-804)GAG>AAG	p.E268K	CAMKV_uc011bcy.1_Missense_Mutation_p.E193K|CAMKV_uc003cxv.1_Missense_Mutation_p.E240K|CAMKV_uc003cxw.1_Missense_Mutation_p.E100K|CAMKV_uc003cxx.1_Missense_Mutation_p.E100K|CAMKV_uc003cxu.2_Missense_Mutation_p.E268K|CAMKV_uc011bcz.1_Missense_Mutation_p.E231K|CAMKV_uc011bda.1_Missense_Mutation_p.E225K|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	268	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		TGCTCCACCTCCATCAGCCTT	0.582													8	27					0	0	1	0	0
MON1A	84315	broad.mit.edu	37	3	49948123	49948123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:49948123C>T	uc003cxz.2	-	4	1225	c.1099G>A	c.(1099-1101)GGC>AGC	p.G367S	MON1A_uc003cya.2_Missense_Mutation_p.G205S|MON1A_uc003cyb.2_Missense_Mutation_p.G205S	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	270							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		CGCTCTGAGCCCGAGAGTAGG	0.622													7	17					0	0	1	0	0
RBM5	10181	broad.mit.edu	37	3	50152983	50152983	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:50152983C>T	uc003cyg.2	+	21	2110	c.1962C>T	c.(1960-1962)CGC>CGT	p.R654R	RBM5_uc011bdj.1_Silent_p.R598R|RBM5_uc011bdk.1_Silent_p.R482R|RBM5_uc003cyh.2_Silent_p.R111R	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5	654	Required for interaction with U2AF2.|C2H2-type; atypical.				apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		TCTGCCGGCGCCAGTTCCCGA	0.572													61	84					0	0	1	0	0
CACNA2D2	9254	broad.mit.edu	37	3	50421744	50421744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:50421744C>T	uc003daq.2	-	6	573	c.535G>A	c.(535-537)GAA>AAA	p.E179K	CACNA2D2_uc003dap.2_Missense_Mutation_p.E179K	NM_006030	NP_006021	Q9NY47	CA2D2_HUMAN	calcium channel, voltage-dependent, alpha	179	Extracellular (Potential).				energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000365)|KIRC - Kidney renal clear cell carcinoma(197;0.00862)|Kidney(197;0.01)	Gabapentin(DB00996)	GACCCCCTTTCCACATCCTCA	0.542													123	207					0	0	1	0	0
MAPKAPK3	7867	broad.mit.edu	37	3	50684626	50684626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:50684626G>A	uc003day.1	+	12	1584	c.988G>A	c.(988-990)GAA>AAA	p.E330K	MAPKAPK3_uc003daz.1_Missense_Mutation_p.E330K|MAPKAPK3_uc003dba.1_Missense_Mutation_p.E330K|MAPKAPK3_uc010hlr.1_Missense_Mutation_p.E330K	NM_004635	NP_004626	Q16644	MAPK3_HUMAN	mitogen-activated protein kinase-activated	330					activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.0188)|Kidney(197;0.0223)		CCACTGGGACGAAGTCAAGGT	0.602													3	11					0	0	1	0	0
RBM15B	29890	broad.mit.edu	37	3	51430373	51430373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:51430373G>A	uc003dbd.2	+	1	1643	c.1543G>A	c.(1543-1545)GAT>AAT	p.D515N		NM_013286	NP_037418	Q8NDT2	RB15B_HUMAN	RNA binding motif protein 15B	515					interspecies interaction between organisms|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|RNA splicing|transcription, DNA-dependent	nucleoplasm	nucleotide binding|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000224)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GCTGCTCACAGATGGATACAC	0.612													38	97					0	0	1	0	0
TEX264	51368	broad.mit.edu	37	3	51718542	51718542	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:51718542C>T	uc010hls.2	+	4	541	c.372C>T	c.(370-372)TCC>TCT	p.S124S	TEX264_uc003dbk.3_Silent_p.S124S|TEX264_uc010hlt.2_5'UTR|TEX264_uc003dbl.3_Silent_p.S124S|TEX264_uc003dbm.3_Silent_p.S163S	NM_001129884	NP_001123356	Q9Y6I9	TX264_HUMAN	testis expressed 264 precursor	124						extracellular region					0				BRCA - Breast invasive adenocarcinoma(193;8.53e-05)|Kidney(197;0.000594)|KIRC - Kidney renal clear cell carcinoma(197;0.000759)		AGGTGTTCTCCTTCCCGGCAC	0.592													30	48					0	0	1	0	0
IQCF1	132141	broad.mit.edu	37	3	51929125	51929126	+	Missense_Mutation	DNP	GG	AA	AA	rs143846209	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:51929125_51929126GG>AA	uc003dbv.2	-	4	496_497	c.398_399CC>TT	c.(397-399)TCC>TTT	p.S133F	IQCF1_uc003dbq.3_Intron	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	133	IQ 2.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		TGCGGGCCTGGGACTGCAGTGT	0.619													40	99					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52381849	52381849	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:52381849G>A	uc011bef.1	+	12	2226	c.1965G>A	c.(1963-1965)AAG>AAA	p.K655K	DNAH1_uc003ddt.1_Silent_p.K655K	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	655	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGCCCCGGAAGAATCCCCTGT	0.607													4	7					0	0	1	0	0
SEMA3G	56920	broad.mit.edu	37	3	52472946	52472946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:52472946G>A	uc003dea.1	-	13	1499	c.1499C>T	c.(1498-1500)TCT>TTT	p.S500F		NM_020163	NP_064548	Q9NS98	SEM3G_HUMAN	semaphorin sem2 precursor	500	Sema.				multicellular organismal development	extracellular region|membrane	receptor activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;1.69e-05)|Kidney(197;0.00173)|KIRC - Kidney renal clear cell carcinoma(197;0.00196)|OV - Ovarian serous cystadenocarcinoma(275;0.0333)		CCTTTTGACAGAGATCTCCAT	0.622													82	162					0	0	1	0	0
NISCH	11188	broad.mit.edu	37	3	52525995	52525995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:52525995G>A	uc011beg.1	+	22	4084	c.4012G>A	c.(4012-4014)GAG>AAG	p.E1338K	NISCH_uc003ded.3_Missense_Mutation_p.E1338K|NISCH_uc003dee.3_Missense_Mutation_p.E827K|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_Missense_Mutation_p.E87K	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1338					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		AAAGATGGCTGAGCCAGAGAA	0.622													25	65					0	0	1	0	0
LRTM1	57408	broad.mit.edu	37	3	54958810	54958810	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:54958810T>C	uc003dhl.2	-	2	574	c.440A>G	c.(439-441)AAC>AGC	p.N147S	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	147	Extracellular (Potential).|LRR 5.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		TATAGTTAGGTTCTCCCAAGT	0.488													30	54					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	55984567	55984567	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:55984567C>T	uc003dhr.1	-	13	2545	c.2289G>A	c.(2287-2289)AAG>AAA	p.K763K	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Silent_p.K242K	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	763	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TGGCCACCTTCTTATTCTGAT	0.408													26	51					0	0	1	0	0
CCDC66	285331	broad.mit.edu	37	3	56651568	56651568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:56651568C>T	uc003dhz.2	+	14	2359	c.2272C>T	c.(2272-2274)CCA>TCA	p.P758S	CCDC66_uc003dhy.2_Missense_Mutation_p.P394S|CCDC66_uc003dhu.2_Missense_Mutation_p.P724S|CCDC66_uc003dhx.2_RNA|CCDC66_uc003dia.2_Missense_Mutation_p.P126S	NM_001141947	NP_001135419	A2RUB6	CCD66_HUMAN	coiled-coil domain containing 66 isoform 1	758										breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0478)|Kidney(284;0.0597)|OV - Ovarian serous cystadenocarcinoma(275;0.233)		AGGCATTTCACCAGAAATTTT	0.383													23	37					0	0	1	0	0
IL17RD	54756	broad.mit.edu	37	3	57143616	57143616	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:57143616G>A	uc003dil.2	-	5	588	c.499C>T	c.(499-501)CCT>TCT	p.P167S	IL17RD_uc003dik.2_Missense_Mutation_p.P143S|IL17RD_uc010hna.2_Missense_Mutation_p.P23S|IL17RD_uc011bex.1_Missense_Mutation_p.P23S	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	167	Extracellular (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		TTAATGGAAGGAAAAGGGACA	0.408													35	55					0	0	1	0	0
DNAH12	201625	broad.mit.edu	37	3	57496666	57496666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:57496666G>A	uc003dit.2	-	5	501	c.320C>T	c.(319-321)CCT>CTT	p.P107L	DNAH12_uc003diu.2_Missense_Mutation_p.P107L	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	107	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						AGGTACTAAAGGACTACTTTC	0.353													20	40					0	0	1	0	0
ARF4	378	broad.mit.edu	37	3	57570183	57570183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:57570183C>T	uc003dix.3	-	2	424	c.76G>A	c.(76-78)GAT>AAT	p.D26N	ARF4_uc003diy.3_RNA|ARF4_uc010hnd.2_Intron|ARF4_uc003diz.3_Intron	NM_001660	NP_001651	P18085	ARF4_HUMAN	ADP-ribosylation factor 4	26	GTP.				protein transport|small GTPase mediated signal transduction|vesicle-mediated transport	Golgi apparatus	GTP binding|GTPase activity			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0449)|Kidney(284;0.0561)		CCAGCAGCATCCAATCCAACT	0.333													71	114					0	0	1	0	0
FLNB	2317	broad.mit.edu	37	3	58141738	58141738	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:58141738C>T	uc003djj.2	+	41	6989	c.6824C>T	c.(6823-6825)CCC>CTC	p.P2275L	FLNB_uc010hne.2_Missense_Mutation_p.P2306L|FLNB_uc003djk.2_Missense_Mutation_p.P2264L|FLNB_uc010hnf.2_Missense_Mutation_p.P2251L|FLNB_uc003djl.2_Missense_Mutation_p.P2095L|FLNB_uc003djm.2_Missense_Mutation_p.P2082L	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2275	Interaction with INPPL1.|Filamin 21.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCGGAAAGCCCCTACCTGGTG	0.557													36	75					0	0	1	0	0
PTPRG	5793	broad.mit.edu	37	3	62153757	62153757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:62153757C>T	uc003dlb.2	+	8	1672	c.953C>T	c.(952-954)TCC>TTC	p.S318F	PTPRG_uc003dlc.2_Missense_Mutation_p.S318F	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	318	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		AGGGTGGTGTCCAAGTCCGCC	0.507													27	62					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64582641	64582641	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:64582641G>A	uc003dmg.2	-	27	4076	c.4044C>T	c.(4042-4044)TCC>TCT	p.S1348S	ADAMTS9_uc011bfo.1_Silent_p.S1320S|ADAMTS9_uc003dmh.1_Silent_p.S1177S|ADAMTS9_uc011bfp.1_Silent_p.S259S	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1348	TSP type-1 9.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CACGCCGCTGGGATCCGCCAG	0.493													46	97					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77542460	77542460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:77542460C>T	uc003dpy.3	+	5	1376	c.733C>T	c.(733-735)CGT>TGT	p.R245C	ROBO2_uc003dpz.2_Missense_Mutation_p.R245C|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Missense_Mutation_p.R245C	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	245	Ig-like C2-type 3.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TGTAGAATTTCGTTGTCAAGT	0.418													31	67					0	0	1	0	0
ROBO2	6092	broad.mit.edu	37	3	77656968	77656968	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:77656968G>A	uc003dpy.3	+	21	3799	c.3156G>A	c.(3154-3156)AAG>AAA	p.K1052K	ROBO2_uc003dpz.2_Silent_p.K1056K|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.K1056K|ROBO2_uc003dqa.2_Silent_p.K179K	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1052	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		GTGGAAAAAAGAAGAAAAATA	0.423													13	29					0	0	1	0	0
CADM2	253559	broad.mit.edu	37	3	85961584	85961584	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:85961584G>A	uc003dqj.2	+	5	1190	c.564G>A	c.(562-564)CTG>CTA	p.L188L	CADM2_uc003dqk.2_Silent_p.L197L|CADM2_uc003dql.2_Silent_p.L190L	NM_153184	NP_694854	Q8N3J6	CADM2_HUMAN	immunoglobulin superfamily, member 4D	188	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly	integral to membrane|plasma membrane				ovary(1)|lung(1)|kidney(1)|skin(1)	4		Lung NSC(201;0.0148)		LUSC - Lung squamous cell carcinoma(29;0.000815)|Lung(72;0.00304)|BRCA - Breast invasive adenocarcinoma(55;0.156)|Epithelial(33;0.157)		GCAGCACACTGGACTTCCGAG	0.443													24	53					0	0	1	0	0
NSUN3	63899	broad.mit.edu	37	3	93813945	93813945	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:93813945C>T	uc003drl.1	+	5	806	c.690C>T	c.(688-690)TCC>TCT	p.S230S		NM_022072	NP_071355	Q9H649	NSUN3_HUMAN	NOL1/NOP2/Sun domain family, member 3	230							methyltransferase activity			skin(1)	1						AGAAGGCATCCTGTAGGATAA	0.378													37	69					0	0	1	0	0
EPHA6	285220	broad.mit.edu	37	3	97356754	97356754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:97356754G>A	uc010how.1	+	14	2655	c.2612G>A	c.(2611-2613)GGA>GAA	p.G871E	EPHA6_uc011bgp.1_3'UTR|EPHA6_uc003drs.3_Missense_Mutation_p.G263E|EPHA6_uc003drr.3_Missense_Mutation_p.G263E|EPHA6_uc003drt.2_Missense_Mutation_p.G263E|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	776	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity	p.G777E(1)		stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CAGTTGGTCGGAATGCTCCGA	0.423													79	135					0	0	1	0	0
GABRR3	200959	broad.mit.edu	37	3	97727839	97727839	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:97727839G>A	uc011bgr.1	-	5	574	c.574C>T	c.(574-576)CCT>TCT	p.P192S		NM_001105580	NP_001099050	A8MPY1	GBRR3_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 3	192	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0						GTGTCAAGAGGAAACCTGCTG	0.398													4	11					0	0	1	0	0
OR5H1	26341	broad.mit.edu	37	3	97852230	97852230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:97852230C>T	uc011bgt.1	+	1	689	c.689C>T	c.(688-690)TCT>TTT	p.S230F		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AAAAAGAAATCTGATAAAGGT	0.378													26	26					0	0	1	0	0
OR5H6	79295	broad.mit.edu	37	3	97983995	97983995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:97983995G>A	uc003dsi.1	+	1	867	c.867G>A	c.(865-867)ATG>ATA	p.M289I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						AAGATATGATGGAGTCTCTAT	0.403													19	37					0	0	1	0	0
ZPLD1	131368	broad.mit.edu	37	3	102183082	102183082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:102183082G>A	uc003dvs.1	+	14	1630	c.748G>A	c.(748-750)GAT>AAT	p.D250N	ZPLD1_uc003dvt.1_Missense_Mutation_p.D266N|ZPLD1_uc011bhg.1_Missense_Mutation_p.D250N	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	250	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						CATTCGATATGATCTTTTCCT	0.318													35	74					0	0	1	0	0
CBLB	868	broad.mit.edu	37	3	105378035	105378035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:105378035G>A	uc003dwc.2	-	19	3050	c.2728C>T	c.(2728-2730)CCG>TCG	p.P910S	CBLB_uc003dwa.2_Missense_Mutation_p.P125S|CBLB_uc011bhi.1_Missense_Mutation_p.P888S	NM_170662	NP_733762	Q13191	CBLB_HUMAN	Cas-Br-M (murine) ecotropic retroviral	910	Pro-rich.|Interaction with SH3KBP1.				cell surface receptor linked signaling pathway|NLS-bearing substrate import into nucleus	cytoplasm|nucleus	calcium ion binding|ligase activity|signal transducer activity|zinc ion binding			lung(4)|ovary(3)|breast(1)|skin(1)	9						GTCCTGCGCGGTCGTGGTTTA	0.453			Mis S		AML								26	66					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108074059	108074059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:108074059G>A	uc003dwy.3	+	5	683	c.516G>A	c.(514-516)TGG>TGA	p.W172*	HHLA2_uc011bhl.1_Nonsense_Mutation_p.W108*|HHLA2_uc010hpu.2_Nonsense_Mutation_p.W172*|HHLA2_uc003dwz.2_Nonsense_Mutation_p.W172*	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	172	Ig-like C1-type.					integral to membrane				ovary(1)	1						TTATCACGTGGAAAATGGACA	0.373													17	28					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108074180	108074180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:108074180G>A	uc003dwy.3	+	5	804	c.637G>A	c.(637-639)GAA>AAA	p.E213K	HHLA2_uc011bhl.1_Missense_Mutation_p.E149K|HHLA2_uc010hpu.2_Missense_Mutation_p.E213K|HHLA2_uc003dwz.2_Missense_Mutation_p.E213K	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	213	Ig-like C1-type.					integral to membrane				ovary(1)	1						ATGTACAATTGAAAATTCACT	0.418													40	87					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108102576	108102576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:108102576C>T	uc003dxa.1	-	41	5749	c.5692G>A	c.(5692-5694)GAA>AAA	p.E1898K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1898	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						GCTTGTGTTTCCtataaaaat	0.328													14	33					0	0	1	0	0
MYH15	22989	broad.mit.edu	37	3	108160067	108160068	+	Missense_Mutation	DNP	CA	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:108160067_108160068CA>TT	uc003dxa.1	-	24	2812_2813	c.2755_2756TG>AA	c.(2755-2757)TGG>AAG	p.W919K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	919	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TTTAATCAGCCACTCGCACTGC	0.495													36	68					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108719407	108719407	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:108719407G>A	uc003dxl.2	-	21	2271	c.2184C>T	c.(2182-2184)ATC>ATT	p.I728I	MORC1_uc011bhn.1_Silent_p.I707I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	728					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATCTCACCAGGATTATATCTG	0.363													34	80					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108818259	108818259	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:108818259C>T	uc003dxl.2	-	6	456	c.369G>A	c.(367-369)ACG>ACA	p.T123T	MORC1_uc011bhn.1_Silent_p.T123T	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	123					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CACAGGTCATCGTTTCTTCCT	0.343													14	39					0	0	1	0	0
PHLDB2	90102	broad.mit.edu	37	3	111671489	111671489	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:111671489G>A	uc010hqa.2	+	11	3113	c.2702G>A	c.(2701-2703)CGA>CAA	p.R901Q	PHLDB2_uc003dyc.2_Missense_Mutation_p.R885Q|PHLDB2_uc003dyd.2_Missense_Mutation_p.R858Q|PHLDB2_uc003dyg.2_Missense_Mutation_p.R901Q|PHLDB2_uc003dyh.2_Missense_Mutation_p.R858Q|PHLDB2_uc003dyi.2_Intron	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	901						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						ACTTTGCCTCGAAAGAAAACC	0.448													27	37					0	0	1	0	0
CD200R1L	344807	broad.mit.edu	37	3	112546427	112546427	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:112546427C>A	uc003dzi.1	-	3	443	c.217G>T	c.(217-219)GGC>TGC	p.G73C	CD200R1L_uc011bhw.1_Missense_Mutation_p.G52C|CD200R1L_uc010hqf.1_Missense_Mutation_p.G52C	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	73	Ig-like V-type.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						GAAGGCTGGCCTCTCAGGATT	0.413													32	81					3.11337e-16	3.15078e-16	1	1	0
KIAA2018	205717	broad.mit.edu	37	3	113377984	113377984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:113377984G>A	uc003eam.2	-	7	2956	c.2545C>T	c.(2545-2547)CCA>TCA	p.P849S	KIAA2018_uc003eal.2_Missense_Mutation_p.P793S	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	849					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GAGACAGATGGTAACACAGCA	0.458													27	43					0	0	1	0	0
UPK1B	7348	broad.mit.edu	37	3	118906709	118906709	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:118906709G>A	uc003ecc.2	+	3	246	c.157G>A	c.(157-159)GAT>AAT	p.D53N	UPK1B_uc011bix.1_5'UTR|UPK1B_uc003ecd.2_Missense_Mutation_p.D53N	NM_006952	NP_008883	O75841	UPK1B_HUMAN	uroplakin 1B	53	Extracellular (Potential).				epithelial cell differentiation	integral to membrane	structural molecule activity				0				GBM - Glioblastoma multiforme(114;0.222)		CACCGACAACGATGACATCTA	0.532													91	125					0	0	1	0	0
ARHGAP31	57514	broad.mit.edu	37	3	119128452	119128453	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:119128452_119128453GG>AA	uc003ecj.3	+	11	2287_2288	c.1755_1756GG>AA	c.(1753-1758)GAGGAG>GAAAAG	p.E586K		NM_020754	NP_065805	Q2M1Z3	RHG31_HUMAN	Cdc42 GTPase-activating protein	586					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion|lamellipodium	GTPase activator activity			ovary(2)	2						CCCACCTGGAGGAGAAGAAAAC	0.554													10	22					0	0	1	0	0
POPDC2	64091	broad.mit.edu	37	3	119367315	119367315	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:119367315G>A	uc003ecx.1	-	3	935	c.801C>T	c.(799-801)CTC>CTT	p.L267L	POPDC2_uc010hqw.1_Silent_p.L267L|POPDC2_uc003ecy.1_Silent_p.L85L	NM_022135	NP_071418	Q9HBU9	POPD2_HUMAN	popeye protein 2	267						integral to membrane				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(114;0.242)		GGACATGGTAGAGGCTGGGAA	0.562													40	83					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120673799	120673799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:120673799G>A	uc003eec.3	+	3	342	c.202G>A	c.(202-204)GGT>AGT	p.G68S	STXBP5L_uc011bji.1_Missense_Mutation_p.G68S	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	68					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AGTTCGGCATGGTTTTCCTCA	0.279													34	40					0	0	1	0	0
POLQ	10721	broad.mit.edu	37	3	121186413	121186413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:121186413C>T	uc003eee.3	-	24	7049	c.6920G>A	c.(6919-6921)GGA>GAA	p.G2307E	POLQ_uc003eed.2_Missense_Mutation_p.G1479E	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	2307					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		AAATGGCATTCCTCTGTCTGC	0.448								DNA_polymerases_(catalytic_subunits)					29	38					0	0	1	0	0
POLQ	10721	broad.mit.edu	37	3	121238874	121238874	+	Missense_Mutation	SNP	G	A	A	rs146111884		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:121238874G>A	uc003eee.3	-	9	1441	c.1312C>T	c.(1312-1314)CGG>TGG	p.R438W		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	438	Helicase C-terminal.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		GCCAAGACCCGAATGAGACCT	0.398								DNA_polymerases_(catalytic_subunits)					38	81					0	0	1	0	0
ARGFX	503582	broad.mit.edu	37	3	121305072	121305072	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:121305072G>A	uc003eef.2	+	5	668	c.573G>A	c.(571-573)TGG>TGA	p.W191*		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	191						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.W191*(1)		skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		ATTGGGCATGGAACTCTACCT	0.502													48	97					0	0	1	0	0
SLC15A2	6565	broad.mit.edu	37	3	121634131	121634131	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:121634131T>C	uc003eep.2	+	6	739	c.586T>C	c.(586-588)TTG>CTG	p.L196L	SLC15A2_uc011bjn.1_Silent_p.L165L	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	196	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TGCAGGGAGCTTGATTTCTAC	0.453													28	69					0	0	1	0	0
ILDR1	286676	broad.mit.edu	37	3	121712524	121712524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:121712524G>A	uc003ees.2	-	7	1178	c.1072C>T	c.(1072-1074)CCC>TCC	p.P358S	ILDR1_uc003eeq.2_Missense_Mutation_p.P326S|ILDR1_uc003eer.2_Missense_Mutation_p.P314S|ILDR1_uc010hrg.2_Missense_Mutation_p.P269S	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	358	Cytoplasmic (Potential).					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GGCCTGGAGGGAATTGGGGTG	0.602													27	46					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122002643	122002643	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:122002643C>T	uc003eev.3	+	7	2214	c.1842C>T	c.(1840-1842)ATC>ATT	p.I614I	CASR_uc003eew.3_Silent_p.I624I	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	614	Helical; Name=1; (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCTTTGGGATCGCACTCACCC	0.537													25	55					0	0	1	0	0
MYLK	4638	broad.mit.edu	37	3	123419581	123419581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:123419581C>T	uc003ego.2	-	18	3016	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	MYLK_uc011bjw.1_Missense_Mutation_p.E912K|MYLK_uc003egp.2_Missense_Mutation_p.E843K|MYLK_uc003egq.2_Missense_Mutation_p.E912K|MYLK_uc003egr.2_Missense_Mutation_p.E843K|MYLK_uc003egs.2_Missense_Mutation_p.E736K|MYLK_uc003egt.2_Missense_Mutation_p.E103K	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	912	1-2.|5 X 28 AA approximate tandem repeats.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		AGGTCGTCTTCCGATAGGGTC	0.582													31	74					0	0	1	0	0
OSBPL11	114885	broad.mit.edu	37	3	125295200	125295200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:125295200G>A	uc003eic.2	-	5	1236	c.499C>T	c.(499-501)CCT>TCT	p.P167S		NM_022776	NP_073613	Q9BXB4	OSB11_HUMAN	oxysterol binding protein-like 11	167					lipid transport		lipid binding			ovary(3)|breast(1)|kidney(1)	5						GACTTCAGAGGAGGATTATTC	0.343													8	28					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125828856	125828856	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:125828856C>T	uc003eim.1	-	20	2468	c.2278G>A	c.(2278-2280)GAG>AAG	p.E760K	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.E659K|ALDH1L1_uc003ein.1_Missense_Mutation_p.E295K	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	760	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TGGCAGTACTCCATCAGCTTC	0.622													25	69					0	0	1	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125873440	125873441	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:125873440_125873441CC>TT	uc003eim.1	-	6	866_867	c.676_677GG>AA	c.(676-678)GGG>AAG	p.G226K	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.G125K|ALDH1L1_uc003eio.2_5'UTR|ALDH1L1_uc010hsf.1_Missense_Mutation_p.G252K|ALDH1L1_uc003eip.1_Missense_Mutation_p.G133K|ALDH1L1_uc011bkj.1_Missense_Mutation_p.G51K	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	226					10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CTTGTCGTTCCCGCGGATCCAG	0.485													92	104					0	0	1	0	0
C3orf22	152065	broad.mit.edu	37	3	126272230	126272230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:126272230C>T	uc003ejb.2	-	2	333	c.4G>A	c.(4-6)GAC>AAC	p.D2N		NM_152533	NP_689746	Q8N5N4	CC022_HUMAN	hypothetical protein LOC152065	2											0				GBM - Glioblastoma multiforme(114;0.147)		GCACTGGAGTCCATCACTGAG	0.582													109	164					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126915670	126915670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:126915670G>A	uc003eji.1	+	2	382	c.142G>A	c.(142-144)GGA>AGA	p.G48R						RecName: Full=Putative uncharacterized protein C3orf56;																		TACCTGCTTGGGAGCCCAGCC	0.632													8	15					0	0	1	0	0
GATA2	2624	broad.mit.edu	37	3	128204626	128204626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:128204626C>T	uc003ekm.3	-	4	1250	c.815G>A	c.(814-816)GGG>GAG	p.G272E	GATA2_uc003ekn.3_Missense_Mutation_p.G272E|GATA2_uc003eko.2_Missense_Mutation_p.G272E	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	272					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GGCCGGTCCCCCCAGGAAGCC	0.642			Mis		AML(CML blast transformation)								15	29					0	0	1	0	0
KIAA1257	57501	broad.mit.edu	37	3	128696912	128696912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:128696912C>T	uc003elj.3	-	5	980	c.784G>A	c.(784-786)GAA>AAA	p.E262K	KIAA1257_uc003elg.1_Missense_Mutation_p.E262K|KIAA1257_uc003eli.3_Missense_Mutation_p.E150K	NM_020741	NP_065792	Q9ULG3	K1257_HUMAN	hypothetical protein LOC57501	262											0						GGGTGTTTTTCTGTTTTTTCT	0.463													22	56					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	129134240	129134240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:129134240C>T	uc003emg.2	-	4	849	c.686G>A	c.(685-687)GGA>GAA	p.G229E		NM_207307	NP_997190			hypothetical protein LOC90288																		CAGAGGGACTCCGACCTGAGG	0.488													14	16					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129214405	129214405	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:129214405C>T	uc003emm.2	+	18	2369	c.2163C>T	c.(2161-2163)CTC>CTT	p.L721L	IFT122_uc003eml.2_Silent_p.L772L|IFT122_uc003emn.2_Silent_p.L662L|IFT122_uc003emo.2_Silent_p.L610L|IFT122_uc003emp.2_Silent_p.L571L|IFT122_uc010htc.2_Silent_p.L713L|IFT122_uc011bky.1_Silent_p.L512L|IFT122_uc003emq.2_Silent_p.L561L|IFT122_uc003emr.2_Silent_p.L473L|IFT122_uc011bla.1_Silent_p.L494L|IFT122_uc010hte.2_Intron|IFT122_uc003ems.2_Silent_p.L102L|IFT122_uc011bkx.1_Silent_p.L561L|IFT122_uc010htd.1_Silent_p.L200L	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	721					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						ACGAGAACCTCGCGCTTGAAA	0.532													30	59					0	0	1	0	0
COL29A1	256076	broad.mit.edu	37	3	130188260	130188260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:130188260G>A	uc010htj.1	+	38	7906	c.7412G>A	c.(7411-7413)CGA>CAA	p.R2471Q	COL29A1_uc010hti.1_RNA|COL29A1_uc010htk.1_Missense_Mutation_p.R510Q	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	2471	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion	collagen					0						CAACTTGGCCGAACCCACAAG	0.393													19	27					0	0	1	0	0
COL6A6	131873	broad.mit.edu	37	3	130353461	130353461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:130353461G>A	uc010htl.2	+	26	5051	c.5020G>A	c.(5020-5022)GGA>AGA	p.G1674R	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1674	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGGAGAAAGTGGACCTAAGGT	0.413													9	13					0	0	1	0	0
TMEM108	66000	broad.mit.edu	37	3	133098765	133098765	+	Silent	SNP	C	T	T	rs144699523	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:133098765C>T	uc003eph.2	+	4	484	c.210C>T	c.(208-210)CCC>CCT	p.P70P	TMEM108_uc003epi.2_Silent_p.P70P|TMEM108_uc003epj.1_Silent_p.P70P|TMEM108_uc003epk.2_Intron|TMEM108_uc003epm.2_Silent_p.P21P	NM_023943	NP_076432	Q6UXF1	TM108_HUMAN	transmembrane protein 108 precursor	70	Pro-rich.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)	4						CCCCCAATCCCGATGGACCCC	0.627													66	120					0	0	1	0	0
IL20RB	53833	broad.mit.edu	37	3	136701038	136701038	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:136701038C>T	uc003eri.1	+	3	501	c.252C>T	c.(250-252)ATC>ATT	p.I84I	IL20RB_uc003erj.1_RNA|IL20RB_uc010hud.1_5'UTR	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	84	Fibronectin type-III 1.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						ACATCTGGATCCCCAGCAGCT	0.557													21	43					0	0	1	0	0
TXNDC6	347736	broad.mit.edu	37	3	138024874	138024874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:138024874C>T	uc003esg.2	-	8	636	c.608G>A	c.(607-609)CGA>CAA	p.R203Q	TXNDC6_uc003esd.1_RNA|TXNDC6_uc010huf.1_Missense_Mutation_p.R118Q|TXNDC6_uc003ese.1_Missense_Mutation_p.R142Q	NM_178130	NP_835231	Q86XW9	TXND6_HUMAN	thioredoxin domain containing 6	203	NDK.				cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	cytoplasm|cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			breast(3)|ovary(1)|pancreas(1)	5						GTAGAAAAGTCGCACTTCTGC	0.378													42	122					0	0	1	0	0
FAIM	55179	broad.mit.edu	37	3	138341174	138341174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:138341174C>T	uc003esr.2	+	3	516	c.256C>T	c.(256-258)CTC>TTC	p.L86F	FAIM_uc003eso.1_Missense_Mutation_p.L120F|FAIM_uc003esp.2_Missense_Mutation_p.L120F|FAIM_uc003esq.2_Missense_Mutation_p.L108F|FAIM_uc003ess.2_Missense_Mutation_p.L86F	NM_001033032	NP_001028204	Q9NVQ4	FAIM1_HUMAN	Fas apoptotic inhibitory molecule isoform c	86					apoptosis	cytoplasm					0						TGGGAAAAGTCTCAAGAAGTA	0.363													32	57					0	0	1	0	0
RASA2	5922	broad.mit.edu	37	3	141328727	141328727	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:141328727G>T	uc003etz.1	+	23	2338	c.2338G>T	c.(2338-2340)GGA>TGA	p.G780*	RASA2_uc010huq.1_Nonsense_Mutation_p.G784*|RASA2_uc003eua.1_Nonsense_Mutation_p.G781*	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	780					intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						AGAGGCTTGTGGAACTATTGC	0.328													41	25					1.51943e-15	1.53663e-15	1	1	0
GK5	256356	broad.mit.edu	37	3	141884533	141884533	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:141884533T>C	uc003euq.1	-	16	1652	c.1521A>G	c.(1519-1521)GAA>GAG	p.E507E	GK5_uc003eup.1_Silent_p.E228E|GK5_uc010hus.1_RNA	NM_001039547	NP_001034636	Q6ZS86	GLPK5_HUMAN	glycerol kinase 5 (putative)	507					glycerol metabolic process		ATP binding|glycerol kinase activity				0						TCATTTCATATTCTTGACATT	0.363													111	45					0	0	1	0	0
SLC9A9	285195	broad.mit.edu	37	3	143186006	143186006	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:143186006A>T	uc003evn.2	-	12	1524	c.1342T>A	c.(1342-1344)TTA>ATA	p.L448I		NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	448	Helical; (Potential).				regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						CGAATAGCTAAGGCAAATGCG	0.433													45	19					0	0	1	0	0
MED12L	116931	broad.mit.edu	37	3	151112471	151112471	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:151112471C>A	uc003eyp.2	+	37	5569	c.5531C>A	c.(5530-5532)TCC>TAC	p.S1844Y	MED12L_uc011bnz.1_Missense_Mutation_p.S1704Y	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1844					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CCTGCAGGCTCCTTTGTCCCA	0.478													154	57					4.44899e-93	4.56672e-93	1	1	0
RAP2B	5912	broad.mit.edu	37	3	152880701	152880701	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:152880701G>A	uc003ezr.2	+	1	673	c.219G>A	c.(217-219)AAG>AAA	p.K73K		NM_002886	NP_002877	P61225	RAP2B_HUMAN	RAP2B, member of RAS oncogene family precursor	73					Rap protein signal transduction|regulation of protein tyrosine kinase activity	recycling endosome membrane	GTP binding|GTPase activity			lung(2)	2			LUSC - Lung squamous cell carcinoma(72;0.0628)|Lung(72;0.11)			TGTACATCAAGAACGGCCAGG	0.612													86	44					0	0	1	0	0
MME	4311	broad.mit.edu	37	3	154832805	154832805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:154832805G>A	uc010hvr.1	+	4	430	c.219G>A	c.(217-219)ATG>ATA	p.M73I	MME_uc003fab.1_Missense_Mutation_p.M73I|MME_uc003fac.1_Missense_Mutation_p.M73I|MME_uc003fad.1_Missense_Mutation_p.M73I|MME_uc003fae.1_Missense_Mutation_p.M73I	NM_007289	NP_009220	P08473	NEP_HUMAN	membrane metallo-endopeptidase	73	Extracellular (Potential).				cell-cell signaling|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(2)|central_nervous_system(1)	3		all_neural(597;0.00391)|Myeloproliferative disorder(1037;0.0122)	LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.135)		Candoxatril(DB00616)	TCCAAAACATGGATGCCACCA	0.438													71	46					0	0	1	0	0
SI	6476	broad.mit.edu	37	3	164700062	164700062	+	Missense_Mutation	SNP	G	A	A	rs139504152	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:164700062G>A	uc003fei.2	-	47	5446	c.5384C>T	c.(5383-5385)TCG>TTG	p.S1795L		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1795	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AAAAGGAAGCGAATTTTTATT	0.343										HNSCC(35;0.089)			25	19					0	0	1	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540497	169540497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:169540497G>A	uc003fgb.2	+	1	788	c.788G>A	c.(787-789)GGG>GAG	p.G263E		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	263	LRR 11.										0						ACGGAAATCGGGCTGAGCGGG	0.607													22	15					0	0	1	0	0
PLD1	5337	broad.mit.edu	37	3	171455442	171455442	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:171455442G>A	uc003fhs.2	-	3	284	c.168C>T	c.(166-168)ATC>ATT	p.I56I	PLD1_uc003fht.2_Silent_p.I56I	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	56					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	CAGAGAAAGGGATATACACTA	0.328													10	9					0	0	1	0	0
NLGN1	22871	broad.mit.edu	37	3	173997319	173997319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:173997319C>T	uc003fio.1	+	6	1951	c.1528C>T	c.(1528-1530)CCC>TCC	p.P510S	NLGN1_uc010hww.1_Missense_Mutation_p.P550S|NLGN1_uc003fip.1_Missense_Mutation_p.P510S	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	527	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			AGACGAGGTTCCCTATGTACT	0.458													29	20					0	0	1	0	0
NAALADL2	254827	broad.mit.edu	37	3	175473133	175473133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:175473133C>T	uc003fit.2	+	13	2203	c.2116C>T	c.(2116-2118)CGG>TGG	p.R706W		NM_207015	NP_996898	Q58DX5	NADL2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	706	Extracellular (Potential).				proteolysis	integral to membrane	peptidase activity			pancreas(1)	1	Ovarian(172;0.0102)	all_cancers(1;0.0272)|all_epithelial(1;0.0553)	OV - Ovarian serous cystadenocarcinoma(80;9.26e-28)	Colorectal(1;1.66e-10)|COAD - Colon adenocarcinoma(1;2.1e-07)|STAD - Stomach adenocarcinoma(1;0.00261)|READ - Rectum adenocarcinoma(3;0.0284)		CATCCGCATCCGGATGCTGAA	0.478													19	10					0	0	1	0	0
KLHL6	89857	broad.mit.edu	37	3	183210300	183210300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:183210300C>T	uc003flr.2	-	6	1604	c.1546G>A	c.(1546-1548)GAC>AAC	p.D516N	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_3'UTR|KLHL6_uc010hxk.1_RNA	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	516	Kelch 4.									haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			TAGATGCGGTCCCGGAAACTC	0.522													51	26					0	0	1	0	0
ABCC5	10057	broad.mit.edu	37	3	183683202	183683202	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:183683202C>T	uc003fmg.2	-	13	2086	c.1921G>A	c.(1921-1923)GAC>AAC	p.D641N	ABCC5_uc011bqt.1_Missense_Mutation_p.D169N|ABCC5_uc010hxl.2_Missense_Mutation_p.D641N	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	641	ABC transporter 1.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			AGGATGTTGTCTCTCAGAGTA	0.507													85	33					0	0	1	0	0
EIF4G1	1981	broad.mit.edu	37	3	184049375	184049375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:184049375G>A	uc003fnp.2	+	30	4574	c.4376G>A	c.(4375-4377)CGG>CAG	p.R1459Q	EIF4G1_uc003fnt.2_Missense_Mutation_p.R1170Q|EIF4G1_uc003fnq.2_Missense_Mutation_p.R1372Q|EIF4G1_uc003fnr.2_Missense_Mutation_p.R1295Q|EIF4G1_uc010hxx.2_Missense_Mutation_p.R1466Q|EIF4G1_uc003fns.2_Missense_Mutation_p.R1419Q|EIF4G1_uc010hxy.2_Missense_Mutation_p.R1466Q|EIF4G1_uc003fnv.3_Missense_Mutation_p.R1460Q|EIF4G1_uc003fnu.3_Missense_Mutation_p.R1459Q|EIF4G1_uc003fnw.2_Missense_Mutation_p.R1466Q|EIF4G1_uc003fnx.2_Missense_Mutation_p.R1264Q|EIF4G1_uc003fny.3_Missense_Mutation_p.R1263Q|EIF4G1_uc003foa.2_Missense_Mutation_p.R131Q	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	1459	W2.|EIF4A-binding.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGTAACCAGCGGGTGTTCGAC	0.582													71	34					0	0	1	0	0
C3orf59	151963	broad.mit.edu	37	3	192516989	192516989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:192516989G>A	uc011bsp.1	-	2	983	c.662C>T	c.(661-663)TCC>TTC	p.S221F		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	221											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		CAGAATGATGGAGATGATGGT	0.468													30	56					0	0	1	0	0
ATP13A4	84239	broad.mit.edu	37	3	193174929	193174929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:193174929C>T	uc003ftd.2	-	16	1883	c.1775G>A	c.(1774-1776)GGA>GAA	p.G592E	ATP13A4_uc003fte.1_Missense_Mutation_p.G592E|ATP13A4_uc011bsr.1_Missense_Mutation_p.G63E|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	592	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		GATTGCAATTCCTTCCACTGG	0.473													99	47					0	0	1	0	0
CPN2	1370	broad.mit.edu	37	3	194063009	194063009	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:194063009G>A	uc003fts.2	-	2	513	c.423C>T	c.(421-423)TTC>TTT	p.F141F		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	141	LRR 2.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		CCAGGTGCTGGAAAAGACCCT	0.602													42	16					0	0	1	0	0
SDHAP2	727956	broad.mit.edu	37	3	195410687	195410687	+	Missense_Mutation	SNP	T	A	A	rs6583274	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:195410687T>A	uc003fuw.2	+	13	1778	c.584T>A	c.(583-585)GTG>GAG	p.V195E	SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CCCTTTGAGGTGCACTGGAGG	0.567													6	12					0	0	1	0	0
TNK2	10188	broad.mit.edu	37	3	195594450	195594450	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:195594450G>A	uc003fvu.1	-	12	3217	c.2674C>T	c.(2674-2676)CTG>TTG	p.L892L	TNK2_uc003fvq.1_Silent_p.L299L|TNK2_uc003fvr.1_Silent_p.L417L|TNK2_uc003fvs.1_Silent_p.L924L|TNK2_uc003fvt.1_Silent_p.L970L|TNK2_uc010hzw.1_RNA	NM_005781	NP_005772	Q07912	ACK1_HUMAN	tyrosine kinase, non-receptor, 2 isoform 1	892	Pro-rich.			Missing (in Ref. 4; AAH08884).	positive regulation of peptidyl-tyrosine phosphorylation|protein ubiquitination|small GTPase mediated signal transduction	adherens junction|cytoplasmic vesicle membrane|endosome|nucleus	ATP binding|GTPase inhibitor activity|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			ovary(3)|central_nervous_system(3)|lung(2)|stomach(1)|skin(1)	10	all_cancers(143;6.48e-09)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;1.46e-22)|OV - Ovarian serous cystadenocarcinoma(49;8.3e-19)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;0.000757)	Adenosine triphosphate(DB00171)	ggcagcagcagaggcacaggc	0.438													10	28					0	0	1	0	0
ZNF595	152687	broad.mit.edu	37	4	195679	195679	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:195679C>T	uc003fzu.1	+	5		c.772C>T						Q7Z3I0	Q7Z3I0_HUMAN	Homo sapiens cDNA FLJ31740 fis, clone NT2RI2007133, highly similar to Zinc finger protein 595.						regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		TGTAAAACTTCATTTCCAAAA	0.388													3	5					0	0	1	0	0
ZNF732	654254	broad.mit.edu	37	4	265953	265953	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:265953G>A	uc011buu.1	-	3	704	c.690C>T	c.(688-690)ATC>ATT	p.I230I	ZNF732_uc010ibb.1_Intron	NM_001137608	NP_001131080	B4DXR9	ZN732_HUMAN	zinc finger protein 732	231	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATGTGGTAAAGATGTTGCCAC	0.343													4	30					0	0	1	0	0
ZNF732	654254	broad.mit.edu	37	4	266376	266376	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:266376C>T	uc011buu.1	-	3	281	c.267G>A	c.(265-267)GGG>GGA	p.G89G	ZNF732_uc010ibb.1_Intron	NM_001137608	NP_001131080	B4DXR9	ZN732_HUMAN	zinc finger protein 732	90					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATCTTCTATCCCCTGCACTG	0.328													6	23					0	0	1	0	0
SLBP	7884	broad.mit.edu	37	4	1695353	1695353	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:1695353G>A	uc003gdi.1	-	8	899	c.784C>T	c.(784-786)CCC>TCC	p.P262S	SLBP_uc010ibx.1_Missense_Mutation_p.P269S|SLBP_uc003gdj.1_Missense_Mutation_p.P242S|SLBP_uc003gdk.1_Missense_Mutation_p.P223S|SLBP_uc011bvf.1_Missense_Mutation_p.P227S|SLBP_uc003gdl.1_Missense_Mutation_p.P179S	NM_006527	NP_006518	Q14493	SLBP_HUMAN	stem-loop (histone) binding protein	262				Missing: Decrease in 3'-end processing efficiency.	DNA replication involved in S phase|histone mRNA 3'-end processing|mRNA export from nucleus|regulation of S phase|termination of RNA polymerase II transcription	cytosol|histone pre-mRNA 3'end processing complex|nucleoplasm	histone pre-mRNA DCP binding|histone pre-mRNA stem-loop binding|protein binding				0		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.0055)			TCTCTCAAGGGTTCAGTTAAA	0.532											OREG0016036	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	52					0	0	1	0	0
HTT	3064	broad.mit.edu	37	4	3227431	3227431	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:3227431C>T	uc011bvq.1	+	58	7960	c.7815C>T	c.(7813-7815)CCC>CCT	p.P2605P		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	2603					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		AGATCAACCCCGAGCGGGAGC	0.642													4	31					0	0	1	0	0
EVC2	132884	broad.mit.edu	37	4	5624321	5624321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:5624321G>A	uc003gij.2	-	14	2498	c.2444C>T	c.(2443-2445)CCT>CTT	p.P815L	EVC2_uc011bwb.1_Missense_Mutation_p.P255L|EVC2_uc003gik.2_Missense_Mutation_p.P735L	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	815						integral to membrane				large_intestine(3)|ovary(2)	5						CACGGCCTCAGGAGCGTCATC	0.572													27	24					0	0	1	0	0
PPP2R2C	5522	broad.mit.edu	37	4	6325235	6325235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:6325235C>T	uc003gjc.2	-	9	1508	c.1138G>A	c.(1138-1140)GAA>AAA	p.E380K	PPP2R2C_uc003gjb.2_Missense_Mutation_p.E363K|PPP2R2C_uc011bwd.1_Missense_Mutation_p.E373K|PPP2R2C_uc011bwe.1_Missense_Mutation_p.E373K|PPP2R2C_uc003gja.2_Missense_Mutation_p.E380K	NM_020416	NP_065149	Q9Y2T4	2ABG_HUMAN	gamma isoform of regulatory subunit B55, protein	380					signal transduction	protein phosphatase type 2A complex	protein phosphatase type 2A regulator activity			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4						TTGCTGCTTTCCCTCGAGGCC	0.622													19	28					0	0	1	0	0
ACOX3	8310	broad.mit.edu	37	4	8416089	8416089	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:8416089A>G	uc010idk.2	-	5	618	c.473T>C	c.(472-474)CTG>CCG	p.L158P	ACOX3_uc003glc.3_Missense_Mutation_p.L158P|ACOX3_uc003gld.3_Missense_Mutation_p.L158P|ACOX3_uc003gle.1_Missense_Mutation_p.L63P	NM_003501	NP_003492	O15254	ACOX3_HUMAN	acyl-Coenzyme A oxidase 3 isoform a	158					bile acid metabolic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|pristanoyl-CoA oxidase activity			central_nervous_system(1)	1						TAATTCGGTCAGAGCAAAACA	0.473													27	48					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8616153	8616153	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:8616153G>T	uc003glm.2	+	9	1557	c.1431G>T	c.(1429-1431)AAG>AAT	p.K477N	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.K340N|CPZ_uc003glo.2_Missense_Mutation_p.K466N|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	477					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GCTGTGTGAAGTTCCCCCCCG	0.572													12	68					2.29192e-23	2.3363e-23	1	1	0
CPZ	8532	broad.mit.edu	37	4	8616156	8616156	+	Silent	SNP	C	T	T	rs145227034		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:8616156C>T	uc003glm.2	+	9	1560	c.1434C>T	c.(1432-1434)TTC>TTT	p.F478F	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Silent_p.F341F|CPZ_uc003glo.2_Silent_p.F467F|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	478					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						GTGTGAAGTTCCCCCCCGAGG	0.572													14	67					0	0	1	0	0
DRD5	1816	broad.mit.edu	37	4	9783968	9783968	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:9783968T>C	uc003gmb.3	+	1	711	c.315T>C	c.(313-315)GGT>GGC	p.G105G		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	105	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	AGGTGGCCGGTTACTGGCCCT	0.612													23	26					0	0	1	0	0
NKX3-2	579	broad.mit.edu	37	4	13543814	13543814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:13543814C>T	uc003gmx.2	-	2	881	c.805G>A	c.(805-807)GAC>AAC	p.D269N		NM_001189	NP_001180	P78367	NKX32_HUMAN	NK3 homeobox 2	269					negative regulation of chondrocyte differentiation|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCAGCAGGTCGGCTGCCATC	0.662													6	9					0	0	1	0	0
TAPT1	202018	broad.mit.edu	37	4	16189852	16189852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:16189852G>A	uc010ied.1	-	5	820	c.739C>T	c.(739-741)CTC>TTC	p.L247F	TAPT1_uc011bxd.1_Intron|TAPT1_uc011bxe.1_Missense_Mutation_p.L136F	NM_153365	NP_699196	Q6NXT6	TAPT1_HUMAN	transmembrane anterior posterior transformation	247	Helical; (Potential).					integral to membrane	growth hormone-releasing hormone receptor activity				0						CAGACATAGAGAACAGCCATG	0.363													47	71					0	0	1	0	0
QDPR	5860	broad.mit.edu	37	4	17506047	17506047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:17506047G>A	uc003gpd.2	-	3	430	c.250C>T	c.(250-252)CTT>TTT	p.L84F	QDPR_uc003gpe.2_Missense_Mutation_p.L53F|QDPR_uc003gpf.2_RNA	NM_000320	NP_000311	P09417	DHPR_HUMAN	quinoid dihydropteridine reductase	84					dihydrobiopterin metabolic process|L-phenylalanine catabolic process|tetrahydrobiopterin biosynthetic process	cytosol	6,7-dihydropteridine reductase activity|binding|electron carrier activity			ovary(1)	1					NADH(DB00157)	GCAACGCAAAGAATTGCATCC	0.468													24	53					0	0	1	0	0
PI4K2B	55300	broad.mit.edu	37	4	25256861	25256861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:25256861C>T	uc003grk.2	+	3	731	c.598C>T	c.(598-600)CAT>TAT	p.H200Y	PI4K2B_uc011bxs.1_Missense_Mutation_p.H104Y	NM_018323	NP_060793	Q8TCG2	P4K2B_HUMAN	phosphatidylinositol 4-kinase type 2 beta	200	PI3K/PI4K.					cytoplasm|membrane	1-phosphatidylinositol 4-kinase activity|ATP binding			ovary(2)|skin(2)	4		Breast(46;0.173)				CAACAAGCTTCATCTGAGCAT	0.423													23	51					0	0	1	0	0
RBPJ	3516	broad.mit.edu	37	4	26432342	26432342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:26432342C>T	uc003grx.1	+	12	1452	c.1216C>T	c.(1216-1218)CCA>TCA	p.P406S	RBPJ_uc003gry.1_Missense_Mutation_p.P391S|RBPJ_uc003grz.1_Missense_Mutation_p.P406S|RBPJ_uc003gsa.1_Missense_Mutation_p.P392S|RBPJ_uc003gsb.1_Missense_Mutation_p.P393S|RBPJ_uc003gsc.1_Missense_Mutation_p.P357L|uc003gsd.2_5'Flank	NM_005349	NP_005340	Q06330	SUH_HUMAN	recombining binding protein suppressor of	406	IPT/TIG.				DNA recombination|negative regulation of transcription, DNA-dependent|positive regulation of transcription of Notch receptor target	cytoplasm|nucleolus|nucleoplasm	DNA binding|protein binding|recombinase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)	3		Breast(46;0.0503)				CTGTGTCGTCCCAGACATTTC	0.423													15	62					0	0	1	0	0
ARAP2	116984	broad.mit.edu	37	4	36231067	36231067	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:36231067G>A	uc003gsq.1	-	2	380	c.42C>T	c.(40-42)TTC>TTT	p.F14F	ARAP2_uc003gsr.1_Silent_p.F14F	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	14	SAM.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGCTCATTAGGAAATCTTTTA	0.398													44	72					0	0	1	0	0
TLR1	7096	broad.mit.edu	37	4	38799864	38799864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:38799864G>A	uc003gtl.2	-	4	863	c.589C>T	c.(589-591)CCC>TCC	p.P197S		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	197	Extracellular (Potential).				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						TTGTTTGTGGGGAACACAATG	0.398													16	44					0	0	1	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351256	40351256	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:40351256C>T	uc003gva.1	+	4	739	c.723C>T	c.(721-723)ATC>ATT	p.I241I		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	241	Helical; (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CGTTCTATATCGTCAACCTCC	0.527													149	386					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42448650	42448650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:42448650C>T	uc003gwr.2	-	31	3140	c.2908G>A	c.(2908-2910)GGA>AGA	p.G970R	ATP8A1_uc003gwq.2_Missense_Mutation_p.G196R|ATP8A1_uc003gws.2_Missense_Mutation_p.G955R	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	970	Extracellular (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TTCCCATTTCCAAATGCAGTA	0.398													18	33					0	0	1	0	0
ATP8A1	10396	broad.mit.edu	37	4	42588400	42588400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:42588400C>T	uc003gwr.2	-	9	920	c.688G>A	c.(688-690)GAT>AAT	p.D230N	ATP8A1_uc003gws.2_Missense_Mutation_p.D230N|ATP8A1_uc011byz.1_Missense_Mutation_p.D230N	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	230	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	CCAACAAAATCGTAGAGATGT	0.393													14	48					0	0	1	0	0
GRXCR1	389207	broad.mit.edu	37	4	42895506	42895506	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:42895506A>G	uc003gwt.2	+	1	223	c.223A>G	c.(223-225)AAT>GAT	p.N75D		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	75					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						TGAGAATGAGAATGACCAGGA	0.463													47	118					0	0	1	0	0
GABRG1	2565	broad.mit.edu	37	4	46060605	46060605	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:46060605C>T	uc003gxb.2	-	6	812	c.660G>A	c.(658-660)TGG>TGA	p.W220*		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	220	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		AGGGCTTTTTCCACTTATACT	0.358													13	22					0	0	1	0	0
GABRA2	2555	broad.mit.edu	37	4	46252357	46252357	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:46252357T>A	uc003gxc.3	-	9	1997	c.1324A>T	c.(1324-1326)AAC>TAC	p.N442Y	GABRA2_uc010igc.2_Missense_Mutation_p.N442Y|GABRA2_uc011bzc.1_Missense_Mutation_p.N447Y	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	442					gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	GGTTCTCTGTTTAAATATGTA	0.343													25	47					0	0	1	0	0
GABRA4	2557	broad.mit.edu	37	4	46979602	46979602	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:46979602T>C	uc003gxg.2	-	4	458	c.319A>G	c.(319-321)AGA>GGA	p.R107G		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	107	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TATTTTAATCTTTTGTCAATC	0.353													26	71					0	0	1	0	0
GABRB1	2560	broad.mit.edu	37	4	47408880	47408880	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:47408880G>A	uc003gxh.2	+	8	1391	c.1017G>A	c.(1015-1017)AAG>AAA	p.K339K	GABRB1_uc011bze.1_Silent_p.K269K	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	339	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CTCAGAAAAAGGGAGCTAGCA	0.373													23	32					0	0	1	0	0
TEC	7006	broad.mit.edu	37	4	48148370	48148370	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:48148370A>C	uc003gxz.2	-	12	1144	c.1053T>G	c.(1051-1053)AAT>AAG	p.N351K		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase	351					intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						TGGTGGGTGCATTCTTCCCTT	0.398													37	132					0	0	1	0	0
CWH43	80157	broad.mit.edu	37	4	48990633	48990633	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:48990633G>A	uc003gyv.2	+	2	365	c.183G>A	c.(181-183)TGG>TGA	p.W61*	CWH43_uc011bzl.1_Nonsense_Mutation_p.W34*	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	61	Helical; (Potential).				GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						CTCCTTTCTGGAAATTGGTTA	0.318													13	22					0	0	1	0	0
LNX1	84708	broad.mit.edu	37	4	54362369	54362369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:54362369C>T	uc003hag.3	-	6	1427	c.1171G>A	c.(1171-1173)GAG>AAG	p.E391K	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.E295K|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	391	PDZ 2.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			CCAAGCTGCTCCTCGGGGCTA	0.522													60	74					0	0	1	0	0
CLOCK	9575	broad.mit.edu	37	4	56342132	56342132	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:56342132C>A	uc003haz.1	-	8	1272	c.346G>T	c.(346-348)GAG>TAG	p.E116*	CLOCK_uc003hba.1_Nonsense_Mutation_p.E116*	NM_004898	NP_004889	O15516	CLOCK_HUMAN	clock	116	PAS 1.			E->K: 3-fold increase in PER1 reporter activity by CLOCK-ARNTL. Some reduction of CRY1 inhibition of CLOCK-ARNTL transcriptional activity; when associated with K-367 and L-601.	circadian rhythm|photoperiodism|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|transcription factor complex	DNA binding|histone acetyltransferase activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(2)|ovary(1)	3	Lung NSC(11;0.00335)|Glioma(25;0.08)|all_epithelial(27;0.0992)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0107)			GGACATACCTCTAACATTAAT	0.284													7	34					1.12685e-05	1.13223e-05	1	1	0
EXOC1	55763	broad.mit.edu	37	4	56758871	56758871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:56758871C>T	uc003hbe.1	+	14	1876	c.1718C>T	c.(1717-1719)TCA>TTA	p.S573L	EXOC1_uc003hbf.1_Missense_Mutation_p.S573L|EXOC1_uc003hbg.1_Missense_Mutation_p.S558L	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	573					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					CTGCCTGTTTCATCTGAGTAT	0.388													48	128					0	0	1	0	0
PAICS	10606	broad.mit.edu	37	4	57312971	57312971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:57312971C>T	uc003hbs.1	+	4	556	c.325C>T	c.(325-327)CTC>TTC	p.L109F	PAICS_uc011cac.1_Missense_Mutation_p.L109F|PAICS_uc003hbt.1_Missense_Mutation_p.L116F|PAICS_uc003hbu.1_Missense_Mutation_p.L109F|PAICS_uc010ihd.1_Missense_Mutation_p.L110F	NM_006452	NP_006443	P22234	PUR6_HUMAN	phosphoribosylaminoimidazole carboxylase,	109	SAICAR synthetase.				'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|identical protein binding|phosphoribosylaminoimidazole carboxylase activity|phosphoribosylaminoimidazolesuccinocarboxamide synthase activity				0	Glioma(25;0.08)|all_neural(26;0.101)				L-Aspartic Acid(DB00128)	TGGTTCTTTTCTCAAAAGAAA	0.388													3	10					0	0	1	0	0
REST	5978	broad.mit.edu	37	4	57796622	57796622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:57796622C>T	uc003hch.2	+	4	1945	c.1598C>T	c.(1597-1599)CCT>CTT	p.P533L	REST_uc003hci.2_Missense_Mutation_p.P533L|REST_uc010ihf.2_Missense_Mutation_p.P207L	NM_005612	NP_005603	Q13127	REST_HUMAN	RE1-silencing transcription factor	533	Lys-rich.				cardiac muscle cell myoblast differentiation|cellular response to drug|cellular response to electrical stimulus|cellular response to glucocorticoid stimulus|histone H4 deacetylation|negative regulation by host of viral transcription|negative regulation of aldosterone biosynthetic process|negative regulation of calcium ion-dependent exocytosis|negative regulation of cell proliferation|negative regulation of cortisol biosynthetic process|negative regulation of dense core granule biogenesis|negative regulation of insulin secretion|negative regulation of mesenchymal stem cell differentiation|negative regulation of neurogenesis|negative regulation of neuron differentiation|positive regulation of apoptosis|positive regulation of caspase activity|positive regulation of transcription, DNA-dependent	cytoplasm|transcriptional repressor complex	calcium channel activity|chromatin binding|core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|outward rectifier potassium channel activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|zinc ion binding			skin(5)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	9	Glioma(25;0.08)|all_neural(26;0.181)					TTACATGGTCCTGTGAATGAT	0.373													12	20					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62845330	62845330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:62845330G>A	uc010ihh.2	+	15	2824	c.2651G>A	c.(2650-2652)GGA>GAA	p.G884E	LPHN3_uc003hcq.3_Missense_Mutation_p.G884E|LPHN3_uc003hct.2_Missense_Mutation_p.G277E	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	871	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						ACGTGGGTTGGAATTTTGCTG	0.468													65	208					0	0	1	0	0
TMPRSS11A	339967	broad.mit.edu	37	4	68780365	68780365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:68780365C>T	uc003hdr.1	-	9	1166	c.1045G>A	c.(1045-1047)GAT>AAT	p.D349N	LOC550112_uc003hdl.3_Intron|TMPRSS11A_uc003hds.1_Missense_Mutation_p.D346N	NM_182606	NP_872412	Q6ZMR5	TM11A_HUMAN	transmembrane protease, serine 11A isoform 1	349	Peptidase S1.|Extracellular (Potential).				cell cycle|proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			skin(1)	1						GGTTTTATATCATTGCCATAC	0.383													27	106					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69519838	69519838	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:69519838C>T	uc011cal.1	-	5	1268	c.1230G>A	c.(1228-1230)AAG>AAA	p.K410K		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	410					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						GGGCTGCTCCCTTGGCTTTCA	0.458													72	204					0	0	1	0	0
UGT2B15	7366	broad.mit.edu	37	4	69535704	69535704	+	Silent	SNP	C	T	T	rs72551391		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:69535704C>T	uc011cal.1	-	1	671	c.633G>A	c.(631-633)AGG>AGA	p.R211R		NM_001076	NP_001067	P54855	UDB15_HUMAN	UDP glycosyltransferase 2B15 precursor	211					steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity				0						TATTTTTTATCCTCTCCATGA	0.338													42	96					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69681793	69681793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:69681793C>T	uc003hee.2	+	1	81	c.56C>T	c.(55-57)TCT>TTT	p.S19F	UGT2B10_uc011cam.1_Missense_Mutation_p.S19F	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	19					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TACTTTAGCTCTGGGAGTTGT	0.428													75	108					0	0	1	0	0
UGT2B10	7365	broad.mit.edu	37	4	69693137	69693137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:69693137C>T	uc003hee.2	+	5	1203	c.1178C>T	c.(1177-1179)CCA>CTA	p.P393L	UGT2B10_uc011cam.1_Missense_Mutation_p.P309L	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	393					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity	p.P393S(1)		skin(3)|ovary(2)	5						GTGGGCATTCCATTGTTTTTT	0.448													71	95					0	0	1	0	0
CSN2	1447	broad.mit.edu	37	4	70823171	70823171	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:70823171G>A	uc003hes.3	-	5	509	c.496C>T	c.(496-498)CAG>TAG	p.Q166*	CSN2_uc003het.3_Nonsense_Mutation_p.Q165*	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	166					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						CACAGGGGCTGAGGGGGAAGT	0.562													20	29					0	0	1	0	0
C4orf7	260436	broad.mit.edu	37	4	71099816	71099816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:71099816C>T	uc003hfd.2	+	4	255	c.170C>T	c.(169-171)CCA>CTA	p.P57L		NM_152997	NP_694542	Q8NFU4	FDSCP_HUMAN	chromosome 4 open reading frame 7 precursor	57	Pro-rich.					extracellular region				central_nervous_system(1)	1						CCACCAATTCCATTTCCAAGA	0.403													81	114					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275418	71275418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:71275418C>T	uc003hfi.2	+	3	547	c.373C>T	c.(373-375)CCT>TCT	p.P125S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	125	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				ACCCCCATTTCCTCCTATTCC	0.413													25	88					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275446	71275446	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:71275446A>G	uc003hfi.2	+	3	575	c.401A>G	c.(400-402)TAC>TGC	p.Y134C		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	134	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				CTTGCTATTTACCTTCCTATC	0.433													32	50					0	0	1	0	0
MUC7	4589	broad.mit.edu	37	4	71346543	71346543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:71346543G>A	uc011cat.1	+	4	370	c.82G>A	c.(82-84)GAA>AAA	p.E28K	MUC7_uc011cau.1_Missense_Mutation_p.E28K|MUC7_uc003hfj.2_Missense_Mutation_p.E28K	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	28						extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			AAGGGATCATGAACTACGTCA	0.279													31	99					0	0	1	0	0
AMBN	258	broad.mit.edu	37	4	71462722	71462722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:71462722C>T	uc003hfl.2	+	3	166	c.91C>T	c.(91-93)CCT>TCT	p.P31S		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	31					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			TCAGTTCTTTCCTCAGCAATC	0.373													17	36					0	0	1	0	0
ENAM	10117	broad.mit.edu	37	4	71500276	71500276	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:71500276A>G	uc011caw.1	+	6	743	c.462A>G	c.(460-462)CAA>CAG	p.Q154Q		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	154					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AGGAAGCTCAACCCCCTCAGG	0.488													14	61					0	0	1	0	0
SLC4A4	8671	broad.mit.edu	37	4	72120974	72120974	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:72120974G>A	uc003hfy.2	+	3	228	c.111G>A	c.(109-111)AAG>AAA	p.K37K	SLC4A4_uc010iic.2_Silent_p.K37K|SLC4A4_uc010iib.2_Silent_p.K37K|SLC4A4_uc003hfz.2_Silent_p.K37K|SLC4A4_uc003hga.2_5'UTR	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	37	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			ATGTGCCGAAGAGTTACAGGA	0.433													45	105					0	0	1	0	0
NPFFR2	10886	broad.mit.edu	37	4	73012984	73012984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:73012984G>A	uc003hgg.2	+	4	1122	c.1024G>A	c.(1024-1026)GGA>AGA	p.G342R	NPFFR2_uc010iig.1_Missense_Mutation_p.G124R|NPFFR2_uc003hgi.2_Missense_Mutation_p.G243R|NPFFR2_uc003hgh.2_Missense_Mutation_p.G240R|NPFFR2_uc003hgj.2_RNA	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	342	Cytoplasmic (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			CATCATGTATGGAAGGATTGG	0.512													27	55					0	0	1	0	0
ALB	213	broad.mit.edu	37	4	74279225	74279225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:74279225C>T	uc003hgs.3	+	8	1005	c.932C>T	c.(931-933)TCC>TTC	p.S311F	ALB_uc003hgw.3_Missense_Mutation_p.S119F|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Missense_Mutation_p.S311F|ALB_uc010iii.2_Missense_Mutation_p.S196F|ALB_uc003hgu.3_Missense_Mutation_p.S161F|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_Missense_Mutation_p.S201F|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'UTR	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	311	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TTGGAAAAATCCCACTGCATT	0.403													50	78					0	0	1	0	0
BTC	685	broad.mit.edu	37	4	75673322	75673322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:75673322C>T	uc003hig.2	-	5	813	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_001729	NP_001720	P35070	BTC_HUMAN	betacellulin precursor	156	Cytoplasmic (Potential).				positive regulation of cell division|positive regulation of cell proliferation	extracellular space|integral to membrane|plasma membrane|soluble fraction	epidermal growth factor receptor binding|growth factor activity			central_nervous_system(1)|skin(1)	2			Lung(101;0.219)			TCCATTTCTTCTTCTTTCTTC	0.348													7	40					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79229258	79229258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:79229258G>A	uc003hlb.2	+	15	2013	c.1573G>A	c.(1573-1575)GAG>AAG	p.E525K	FRAS1_uc003hkw.2_Missense_Mutation_p.E525K|FRAS1_uc003hky.1_Missense_Mutation_p.E229K|FRAS1_uc003hkz.2_Missense_Mutation_p.E229K|FRAS1_uc003hla.1_Missense_Mutation_p.E36K	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	525	FU 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GGGCCCAACGGAGAAGCACTG	0.547													18	34					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79295384	79295384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:79295384C>T	uc003hlb.2	+	25	3570	c.3130C>T	c.(3130-3132)CAT>TAT	p.H1044Y	FRAS1_uc003hkw.2_Missense_Mutation_p.H1044Y	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1043	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTTTGCAGATCATGCAAAGCA	0.507													48	81					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79308609	79308609	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:79308609C>T	uc003hlb.2	+	29	4169	c.3729C>T	c.(3727-3729)ATC>ATT	p.I1243I	FRAS1_uc003hkw.2_Silent_p.I1243I	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1242	CSPG 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGCTTGACATCCGAGATGATG	0.502													28	42					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328327	80328327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:80328327C>T	uc003hlu.2	-	1	1046	c.1028G>A	c.(1027-1029)GGA>GAA	p.G343E		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	343					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						TTCAATGTCTCCTGAGGTCTC	0.433													24	67					0	0	1	0	0
WDFY3	23001	broad.mit.edu	37	4	85724567	85724567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:85724567G>A	uc003hpd.2	-	16	2891	c.2483C>T	c.(2482-2484)GCC>GTC	p.A828V		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	828						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TTTCAGGTCGGCAACATTTTT	0.418													15	56					0	0	1	0	0
AFF1	4299	broad.mit.edu	37	4	88047467	88047467	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:88047467C>T	uc003hqj.3	+	13	3176	c.2769C>T	c.(2767-2769)TCC>TCT	p.S923S	AFF1_uc011ccz.1_Silent_p.S930S|AFF1_uc003hqk.3_Silent_p.S923S|AFF1_uc011cda.1_Silent_p.S561S	NM_005935	NP_005926	P51825	AFF1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	923						nucleus	sequence-specific DNA binding transcription factor activity			breast(1)	1		Acute lymphoblastic leukemia(40;0.0935)|all_hematologic(202;0.111)|Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000233)		GGAAGGGCTCCAGAAGCTCCT	0.542													12	34					0	0	1	0	0
SPARCL1	8404	broad.mit.edu	37	4	88401667	88401667	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:88401667C>T	uc010ikm.2	-	10	2246	c.1674G>A	c.(1672-1674)AAG>AAA	p.K558K	SPARCL1_uc011cdc.1_Silent_p.K433K|SPARCL1_uc003hqs.3_Silent_p.K558K|SPARCL1_uc011cdd.1_Silent_p.K433K	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	558					signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		GGTAAATTTTCTTGACCTGGG	0.403													20	29					0	0	1	0	0
Unknown	0	broad.mit.edu	37	4	88813768	88813768	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:88813768G>T	uc010iko.1	+	2	712	c.712G>T	c.(712-714)GAT>TAT	p.D238Y						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		agatgaggaggatgacagcag	0.1													4	5					0.00909568	0.00912353	1	1	0
ABCG2	9429	broad.mit.edu	37	4	89061118	89061118	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:89061118G>A	uc003hrg.2	-	2	523	c.30C>T	c.(28-30)ATC>ATT	p.I10I	ABCG2_uc003hrh.2_Silent_p.I10I|ABCG2_uc003hri.1_Silent_p.I10I|ABCG2_uc003hrj.1_Silent_p.I10I|ABCG2_uc003hrk.1_Silent_p.I10I	NM_004827	NP_004818	Q9UNQ0	ABCG2_HUMAN	ATP-binding cassette, sub-family G, member 2	10	Cytoplasmic (Potential).				cellular iron ion homeostasis|urate metabolic process	integral to membrane|plasma membrane	ATP binding|heme transporter activity|protein homodimerization activity|xenobiotic-transporting ATPase activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.02e-05)	Imatinib(DB00619)|Mitoxantrone(DB01204)|Nicardipine(DB00622)|Nitrendipine(DB01054)|Rosuvastatin(DB01098)|Saquinavir(DB01232)|Topotecan(DB01030)	GTGACACTGGGATAAAAACTT	0.408													11	21					0	0	1	0	0
HERC3	8916	broad.mit.edu	37	4	89576354	89576354	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:89576354T>C	uc003hrw.1	+	8	973	c.807T>C	c.(805-807)GGT>GGC	p.G269G	HERC3_uc003hrv.2_Silent_p.G269G|HERC3_uc011cdn.1_Silent_p.G151G	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	269	RCC1 6.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		TTGGCGCTGGTTCCTGTGGGC	0.438													61	154					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94128596	94128596	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:94128596C>T	uc011cdt.1	+	5	1035	c.777C>T	c.(775-777)ATC>ATT	p.I259I	GRID2_uc010ikx.2_Silent_p.I259I|GRID2_uc011cdu.1_Silent_p.I164I|GRID2_uc011cdv.1_RNA|GRID2_uc010ikz.1_5'UTR	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	259	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GTCACTGGATCATTATAAATG	0.279													27	65					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94159568	94159568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:94159568G>A	uc011cdt.1	+	8	1430	c.1172G>A	c.(1171-1173)GGA>GAA	p.G391E	GRID2_uc011cdu.1_Missense_Mutation_p.G296E|GRID2_uc010ikz.1_Missense_Mutation_p.G72E	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	391	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GGAGAAAATGGAGGCAATCCC	0.388													40	63					0	0	1	0	0
ADH4	127	broad.mit.edu	37	4	100052902	100052902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:100052902G>A	uc003hun.2	-	6	672	c.596C>T	c.(595-597)TCG>TTG	p.S199L	uc003hum.1_Intron|ADH4_uc011ced.1_Missense_Mutation_p.S218L	NM_000670	NP_000661	P08319	ADH4_HUMAN	class II alcohol dehydrogenase, pi subunit	199					alcohol catabolic process|cellular aldehyde metabolic process|ethanol oxidation|quinone cofactor metabolic process|retinol metabolic process|xenobiotic metabolic process	cytosol|microtubule cytoskeleton	alcohol dehydrogenase activity, zinc-dependent|all-trans retinal binding|benzaldehyde dehydrogenase activity|NAD binding|NADPH:quinone reductase activity|retinol binding|retinol dehydrogenase activity|zinc ion binding			skin(2)	2				OV - Ovarian serous cystadenocarcinoma(123;4.48e-08)	NADH(DB00157)	AGCACAAGTCGAACCAGGGGT	0.458													29	36					0	0	1	0	0
ADH6	130	broad.mit.edu	37	4	100125397	100125397	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:100125397G>A	uc003huo.2	-	9	1201	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	uc003hum.1_Intron|ADH6_uc011cef.1_Silent_p.I160I	NM_001102470	NP_001095940	P28332	ADH6_HUMAN	class V alcohol dehydrogenase isoform 1	8					ethanol oxidation|response to ethanol|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|electron carrier activity|zinc ion binding			ovary(1)|kidney(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;3.58e-08)	Abacavir(DB01048)|NADH(DB00157)	GGATACAGCGGATACTGAAAA	0.323													11	41					0	0	1	0	0
ADH1B	125	broad.mit.edu	37	4	100232806	100232806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:100232806G>A	uc003hus.3	-	7	920	c.836C>T	c.(835-837)TCC>TTC	p.S279F	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.S239F|ADH1B_uc011ceh.1_Missense_Mutation_p.S124F|ADH1B_uc011cei.1_Missense_Mutation_p.S239F	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	279					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	ACATAACAGGGAAGCCATCTG	0.423													34	107					0	0	1	0	0
DAPP1	27071	broad.mit.edu	37	4	100787272	100787272	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:100787272G>A	uc003hvf.3	+	8	858	c.768G>A	c.(766-768)TGG>TGA	p.W256*	DAPP1_uc010ilh.2_Nonsense_Mutation_p.W256*	NM_014395	NP_055210	Q9UN19	DAPP1_HUMAN	dual adaptor of phosphotyrosine and	256	PH.				signal transduction	cytoplasm|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|protein tyrosine phosphatase activity				0				OV - Ovarian serous cystadenocarcinoma(123;7.04e-09)		TATTACGCTGGAAATTGGTGA	0.358													13	25					0	0	1	0	0
SLC39A8	64116	broad.mit.edu	37	4	103228746	103228746	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:103228746G>A	uc003hwb.1	-	3	928	c.399C>T	c.(397-399)TTC>TTT	p.F133F	SLC39A8_uc011ceo.1_Silent_p.F133F|SLC39A8_uc003hwa.1_Silent_p.F66F|SLC39A8_uc003hwc.2_Silent_p.F133F	NM_022154	NP_071437	Q9C0K1	S39A8_HUMAN	solute carrier family 39 (zinc transporter),	133	Helical; (Potential).					integral to membrane|organelle membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(203;0.217)		all cancers(1;9.78e-10)|OV - Ovarian serous cystadenocarcinoma(123;1.52e-09)|GBM - Glioblastoma multiforme(1;0.000142)		TCACTGACAGGAATCCATATC	0.378													33	68					0	0	1	0	0
MANBA	4126	broad.mit.edu	37	4	103645099	103645099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:103645099G>A	uc003hwg.2	-	3	398	c.298C>T	c.(298-300)CTT>TTT	p.L100F	MANBA_uc011ces.1_Missense_Mutation_p.L100F	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	100					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		ACTCCCTCAAGAATCAAATTT	0.269													6	29					0	0	1	0	0
TBCK	93627	broad.mit.edu	37	4	107037521	107037521	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:107037521G>A	uc010ilv.2	-	24	2615	c.2250C>T	c.(2248-2250)ATC>ATT	p.I750I	TBCK_uc003hyb.2_Silent_p.I493I|TBCK_uc003hye.2_Silent_p.I711I|TBCK_uc003hyc.2_Silent_p.I687I|TBCK_uc003hyd.2_Silent_p.I578I|TBCK_uc003hyf.2_Silent_p.I750I	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	750						intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						CATTTAATGGGATGGATTCTC	0.353													20	26					0	0	1	0	0
ENPEP	2028	broad.mit.edu	37	4	111436584	111436584	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:111436584C>T	uc003iab.3	+	8	1837	c.1495C>T	c.(1495-1497)CAA>TAA	p.Q499*		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	499	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AGAGAATTTTCAAAAAGGATG	0.308													19	33					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114279819	114279819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:114279819C>T	uc003ibe.3	+	38	10145	c.10045C>T	c.(10045-10047)CCT>TCT	p.P3349S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.P651S|ANK2_uc011cgb.1_Missense_Mutation_p.P3364S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3316					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GTCCAAACTCCCTGTCAAAGT	0.468													14	72					0	0	1	0	0
CAMK2D	817	broad.mit.edu	37	4	114452426	114452426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:114452426G>A	uc003ibi.2	-	8	1406	c.547C>T	c.(547-549)CCA>TCA	p.P183S	CAMK2D_uc003ibj.2_Missense_Mutation_p.P183S|CAMK2D_uc003ibk.2_Missense_Mutation_p.P183S|CAMK2D_uc003ibo.3_Missense_Mutation_p.P183S|CAMK2D_uc003ibm.2_Missense_Mutation_p.P183S|CAMK2D_uc003ibn.2_Missense_Mutation_p.P183S|CAMK2D_uc003ibl.2_Missense_Mutation_p.P183S	NM_001221	NP_001212	Q13557	KCC2D_HUMAN	calcium/calmodulin-dependent protein kinase II	183	Protein kinase.				interferon-gamma-mediated signaling pathway|regulation of cell growth|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)	1		Ovarian(17;0.00369)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000271)		AAAACTTCTGGAGAAAGATAT	0.353													17	38					0	0	1	0	0
NDST3	9348	broad.mit.edu	37	4	118975654	118975654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:118975654C>T	uc003ibx.2	+	2	992	c.589C>T	c.(589-591)CCT>TCT	p.P197S	NDST3_uc011cgf.1_Missense_Mutation_p.P197S|NDST3_uc003ibw.2_Missense_Mutation_p.P197S	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	197	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						TTGTATTAATCCTCATTCTCC	0.358													46	87					0	0	1	0	0
SEC24D	9871	broad.mit.edu	37	4	119673858	119673858	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:119673858A>C	uc003ici.3	-	12	1879	c.1607T>G	c.(1606-1608)ATT>AGT	p.I536S	SEC24D_uc003ich.3_RNA|SEC24D_uc003icj.3_Missense_Mutation_p.I537S|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	536					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						TTACTTATGAATCACAGATTG	0.343													7	21					0	0	1	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948050	119948050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:119948050G>A	uc003icm.3	+	3	722	c.526G>A	c.(526-528)GGA>AGA	p.G176R	SYNPO2_uc010ina.2_Missense_Mutation_p.G176R|SYNPO2_uc010inb.2_Missense_Mutation_p.G176R|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.G104R	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	176						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						CTCCCAAAGAGGACGCGTGGC	0.542													8	47					0	0	1	0	0
PDE5A	8654	broad.mit.edu	37	4	120481508	120481508	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:120481508G>T	uc003idh.2	-	7	1297	c.1142C>A	c.(1141-1143)TCT>TAT	p.S381Y	PDE5A_uc003idf.2_Missense_Mutation_p.S339Y|PDE5A_uc003idg.2_Missense_Mutation_p.S329Y	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	381	GAF 2.			S -> F (in Ref. 9; AAP31235).	platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	AAACACACTAGAAAAAGAATC	0.323													22	39					6.32553e-13	6.384e-13	1	1	0
KIAA1109	84162	broad.mit.edu	37	4	123140656	123140656	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:123140656T>C	uc003ieh.2	+	19	2454	c.2409T>C	c.(2407-2409)CTT>CTC	p.L803L	KIAA1109_uc003iei.1_Silent_p.L557L|KIAA1109_uc010ins.1_Silent_p.L147L|KIAA1109_uc003iej.1_Silent_p.L188L	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	803					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TTCATCCACTTGCCTTGCGTC	0.403													49	70					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126242404	126242404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:126242404C>T	uc003ifj.3	+	1	4838	c.4838C>T	c.(4837-4839)TCG>TTG	p.S1613L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1613	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGGAGGAAATCGACCACTGAA	0.443													32	92					0	0	1	0	0
FAT4	79633	broad.mit.edu	37	4	126373837	126373837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:126373837C>T	uc003ifj.3	+	9	11666	c.11666C>T	c.(11665-11667)CCA>CTA	p.P3889L	FAT4_uc011cgp.1_Missense_Mutation_p.P2187L|FAT4_uc003ifi.1_Missense_Mutation_p.P1367L	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3889	EGF-like 2; calcium-binding (Potential).|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGCAGCTGCCCAGATGGCTTC	0.483													11	26					0	0	1	0	0
CLGN	1047	broad.mit.edu	37	4	141317281	141317281	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:141317281A>G	uc011chi.1	-	10	1181	c.963T>C	c.(961-963)TTT>TTC	p.F321F	CLGN_uc003iii.2_Silent_p.F321F	NM_001130675	NP_001124147	O14967	CLGN_HUMAN	calmegin precursor	321	Lumenal (Potential).				protein folding	endoplasmic reticulum membrane|integral to membrane	calcium ion binding|unfolded protein binding			ovary(2)|skin(1)	3	all_hematologic(180;0.162)					GATCAGGGATAAATTTTGGTT	0.358													90	140					0	0	1	0	0
TBC1D9	23158	broad.mit.edu	37	4	141560538	141560538	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:141560538G>A	uc010ioj.2	-	14	2654	c.2382C>T	c.(2380-2382)TTC>TTT	p.F794F		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	794						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GTCTCTGTTTGAATCTCATCT	0.428													5	11					0	0	1	0	0
TBC1D9	23158	broad.mit.edu	37	4	141583175	141583175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:141583175C>T	uc010ioj.2	-	10	1947	c.1675G>A	c.(1675-1677)GAG>AAG	p.E559K		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	559	Rab-GAP TBC.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CTCTCAATCTCCTCCGTGGCG	0.473													60	99					0	0	1	0	0
USP38	84640	broad.mit.edu	37	4	144133488	144133488	+	Silent	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:144133488T>A	uc003ijb.2	+	8	2049	c.1515T>A	c.(1513-1515)CCT>CCA	p.P505P	USP38_uc003ija.3_Silent_p.P505P|USP38_uc003ijc.2_RNA	NM_032557	NP_115946	Q8NB14	UBP38_HUMAN	ubiquitin specific peptidase 38	505					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_hematologic(180;0.158)					CATACGCACCTCGGATATTCT	0.383													40	64					0	0	1	0	0
GAB1	2549	broad.mit.edu	37	4	144354740	144354740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:144354740C>T	uc003ije.2	+	3	823	c.464C>T	c.(463-465)TCT>TTT	p.S155F	GAB1_uc003ijd.2_Missense_Mutation_p.S155F|GAB1_uc011chq.1_Missense_Mutation_p.S52F	NM_002039	NP_002030	Q13480	GAB1_HUMAN	GRB2-associated binding protein 1 isoform b	155					cell proliferation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			breast(2)|lung(1)|skin(1)	4	all_hematologic(180;0.158)					GATTCATCCTCTGCTACTCTA	0.483													39	61					0	0	1	0	0
GYPE	2996	broad.mit.edu	37	4	144797983	144797983	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:144797983C>T	uc003ijj.2	-	3	218	c.162G>A	c.(160-162)GCG>GCA	p.A54A	GYPE_uc010ion.2_Intron|GYPE_uc003ijk.3_Silent_p.A54A	NM_198682	NP_941391	P15421	GLPE_HUMAN	glycophorin E precursor	54	Helical; (Potential).					integral to plasma membrane					0	all_hematologic(180;0.158)					CACGAGCCATCGCCCACCAAT	0.348													9	13					0	0	1	0	0
GYPA	2993	broad.mit.edu	37	4	145035851	145035851	+	Missense_Mutation	SNP	C	T	T	rs149908820	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:145035851C>T	uc003ijo.3	-	6	543	c.427G>A	c.(427-429)GAA>AAA	p.E143K	GYPA_uc003ijn.2_Intron|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Missense_Mutation_p.E110K|GYPA_uc003ijp.3_Missense_Mutation_p.E111K|GYPA_uc010ioq.2_Missense_Mutation_p.E130K|GYPA_uc010ior.2_Missense_Mutation_p.E78K|GYPA_uc010ios.1_RNA	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	143	Cytoplasmic.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					CCTGGATTTTCTATTTCAACA	0.363													14	27					0	0	1	0	0
HHIP	64399	broad.mit.edu	37	4	145628392	145628392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:145628392G>A	uc003ijs.1	+	6	1792	c.1137G>A	c.(1135-1137)ATG>ATA	p.M379I		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	379	Interaction with SHH zinc binding site.					cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		TGGATGATATGGAAGAAATGG	0.443													23	67					0	0	1	0	0
HHIP	64399	broad.mit.edu	37	4	145635421	145635421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:145635421C>T	uc003ijs.1	+	9	2123	c.1468C>T	c.(1468-1470)CCT>TCT	p.P490S		NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	490						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		CAGTAATGGTCCTTTGGTTGG	0.388													27	44					0	0	1	0	0
MMAA	166785	broad.mit.edu	37	4	146560419	146560419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:146560419C>T	uc003ikh.3	+	2	213	c.128C>T	c.(127-129)CCG>CTG	p.P43L	MMAA_uc003ikg.2_Missense_Mutation_p.P43L|MMAA_uc003iki.1_RNA|MMAA_uc010iow.2_RNA	NM_172250	NP_758454	Q8IVH4	MMAA_HUMAN	methylmalonic aciduria type A precursor	43						mitochondrion	GTP binding|nucleoside-triphosphatase activity			ovary(1)	1	all_hematologic(180;0.151)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TGTGCTCAGCCGTTTAATTCT	0.418													57	81					0	0	1	0	0
TTC29	83894	broad.mit.edu	37	4	147830357	147830357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:147830357C>T	uc003ikw.3	-	5	448	c.221G>A	c.(220-222)CGA>CAA	p.R74Q	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Missense_Mutation_p.R100Q|TTC29_uc010ipd.1_Missense_Mutation_p.R74Q	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	74							binding				0	all_hematologic(180;0.151)					ATAACCATCTCGCAGCATGTC	0.493													4	23					0	0	1	0	0
SH3D19	152503	broad.mit.edu	37	4	152054327	152054327	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:152054327A>T	uc010ipl.1	-	17	2867	c.1777T>A	c.(1777-1779)TCA>ACA	p.S593T	SH3D19_uc003imb.2_Missense_Mutation_p.S348T|SH3D19_uc003imc.2_Missense_Mutation_p.S534T|SH3D19_uc003ime.2_Missense_Mutation_p.S570T|SH3D19_uc010ipm.2_Missense_Mutation_p.S570T	NM_001009555	NP_001009555	Q5HYK7	SH319_HUMAN	SH3 domain containing 19 isoform a	593	SH3 3.				cellular membrane organization|positive regulation of membrane protein ectodomain proteolysis|post-Golgi vesicle-mediated transport	cytosol|Golgi apparatus|nucleus|plasma membrane	proline-rich region binding			ovary(1)|skin(1)	2	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.138)				TCTCCCTCTGAGAAACTCAAC	0.418													27	57					0	0	1	0	0
KIAA0922	23240	broad.mit.edu	37	4	154502638	154502638	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:154502638T>G	uc003inm.3	+	9	870	c.818T>G	c.(817-819)TTT>TGT	p.F273C	KIAA0922_uc010ipp.2_Missense_Mutation_p.F273C|KIAA0922_uc010ipq.2_Missense_Mutation_p.F125C	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	273	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				TCAAAAGAATTTGAAGAAAAC	0.348													38	27					0	0	1	0	0
TLR2	7097	broad.mit.edu	37	4	154624117	154624117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:154624117G>A	uc003inq.2	+	3	277	c.58G>A	c.(58-60)GAA>AAA	p.E20K	TLR2_uc003inr.2_Missense_Mutation_p.E20K|TLR2_uc003ins.2_Missense_Mutation_p.E20K	NM_003264	NP_003255	O60603	TLR2_HUMAN	toll-like receptor 2 precursor	20	Extracellular (Potential).				cellular response to diacyl bacterial lipopeptide|cellular response to lipoteichoic acid|cellular response to triacyl bacterial lipopeptide|detection of diacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|I-kappaB phosphorylation|induction of apoptosis|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of interferon-beta production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|positive regulation of Wnt receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|integral to plasma membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	Gram-positive bacterial cell surface binding|lipopolysaccharide receptor activity|peptidoglycan binding|protein heterodimerization activity|transmembrane receptor activity|triacyl lipopeptide binding			ovary(1)|lung(1)|breast(1)	3	all_hematologic(180;0.093)	Renal(120;0.117)				CCTCTCCAAGGAAGAATCCTC	0.478													34	48					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155241573	155241573	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:155241573A>G	uc003inw.2	-	14	3613	c.3613T>C	c.(3613-3615)TCA>CCA	p.S1205P		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	1205	Cadherin 10.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		TCATTTCCTGAGAGGATGCTG	0.373													42	85					0	0	1	0	0
DCHS2	54798	broad.mit.edu	37	4	155252741	155252741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:155252741C>T	uc003inw.2	-	10	2359	c.2359G>A	c.(2359-2361)GGA>AGA	p.G787R	DCHS2_uc003inx.2_Intron	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	787	Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		tcaccttctcctaattcacag	0.209													8	22					0	0	1	0	0
FGA	2243	broad.mit.edu	37	4	155505322	155505322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:155505322G>A	uc003iod.1	-	6	2613	c.2555C>T	c.(2554-2556)TCC>TTC	p.S852F		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	852	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGCCCTGAGGGAATAATCTGC	0.493													36	92					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158057631	158057631	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:158057631T>C	uc003ipj.2	+	5	510	c.308T>C	c.(307-309)GTT>GCT	p.V103A		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	103	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	GACTATAGAGTTAACATCTTC	0.403													9	24					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166976365	166976365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:166976365G>A	uc003irh.1	+	13	2309	c.1662G>A	c.(1660-1662)ATG>ATA	p.M554I	TLL1_uc011cjn.1_Missense_Mutation_p.M577I|TLL1_uc011cjo.1_Missense_Mutation_p.M378I	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	554	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CTTTGTGGATGAAGTTTGTTT	0.358													15	63					0	0	1	0	0
TLL1	7092	broad.mit.edu	37	4	166996156	166996156	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:166996156G>A	uc003irh.1	+	17	2961	c.2314_splice	c.e17+1	p.A772_splice	TLL1_uc011cjn.1_Splice_Site_p.A795_splice|TLL1_uc011cjo.1_Splice_Site_p.A596_splice	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor						cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TGCAAGGAAGGTATGGAACGG	0.398													76	149					0	0	1	0	0
SPOCK3	50859	broad.mit.edu	37	4	167921567	167921568	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:167921567_167921568GG>AA	uc003iri.1	-	5	432_433	c.291_292CC>TT	c.(289-294)CGCCAT>CGTTAT	p.H98Y	SPOCK3_uc011cjp.1_Missense_Mutation_p.H95Y|SPOCK3_uc011cjq.1_Missense_Mutation_p.H107Y|SPOCK3_uc011cjr.1_Intron|SPOCK3_uc003irj.1_Missense_Mutation_p.H95Y|SPOCK3_uc011cjs.1_Missense_Mutation_p.H47Y|SPOCK3_uc011cjt.1_Missense_Mutation_p.H6Y|SPOCK3_uc011cju.1_Intron|SPOCK3_uc011cjv.1_Intron|SPOCK3_uc003irk.3_Missense_Mutation_p.H95Y|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	98					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		CATACTTTATGGCGACTACATT	0.356													17	67					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169138132	169138132	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:169138132G>A	uc003irp.2	-	38	5383	c.5091C>T	c.(5089-5091)GCC>GCT	p.A1697A	DDX60_uc003iro.2_3'UTR	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1697							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GTTGTTCAAAGGCTAAGACAA	0.338													20	32					0	0	1	0	0
DDX60	55601	broad.mit.edu	37	4	169195117	169195117	+	Missense_Mutation	SNP	C	T	T	rs144653089	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:169195117C>T	uc003irp.2	-	17	2714	c.2422G>A	c.(2422-2424)GAC>AAC	p.D808N		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	808	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		ACCACCCCGTCGTCGCTCTCC	0.448													52	79					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169353714	169353714	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:169353714G>A	uc003irq.3	-	12	1629	c.1408C>T	c.(1408-1410)CCG>TCG	p.P470S	DDX60L_uc003irr.1_Missense_Mutation_p.P470S|DDX60L_uc003irs.1_Missense_Mutation_p.P197S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	470							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GGAACAACCGGATCATCACTG	0.328													6	16					0	0	1	0	0
PALLD	23022	broad.mit.edu	37	4	169611810	169611810	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:169611810C>T	uc011cjx.1	+	7	1603	c.1392C>T	c.(1390-1392)GTC>GTT	p.V464V	PALLD_uc003iru.2_Silent_p.V464V|PALLD_uc003irv.2_Silent_p.V82V	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	464	Ig-like C2-type 2.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		AGTGCCGGGTCCGTGGGGCAC	0.527									Pancreatic_Cancer_Familial_Clustering_of				54	84					0	0	1	0	0
MFAP3L	9848	broad.mit.edu	37	4	170913224	170913224	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:170913224G>T	uc003isp.3	-	3	713	c.535C>A	c.(535-537)CTA>ATA	p.L179I	MFAP3L_uc003isn.3_Missense_Mutation_p.L76I	NM_021647	NP_067679	O75121	MFA3L_HUMAN	microfibrillar-associated protein 3-like isoform	179	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|all_neural(102;0.122)|Melanoma(52;0.17)		GBM - Glioblastoma multiforme(119;0.0201)|LUSC - Lung squamous cell carcinoma(193;0.116)		GTCTTCTTTAGATGGCTGCTC	0.517													32	84					1.836e-18	1.8619e-18	1	1	0
ADAM29	11086	broad.mit.edu	37	4	175897037	175897037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:175897037G>A	uc003iuc.2	+	5	1031	c.361G>A	c.(361-363)GGG>AGG	p.G121R	ADAM29_uc003iud.2_Missense_Mutation_p.G121R|ADAM29_uc010irr.2_Missense_Mutation_p.G121R|ADAM29_uc011cki.1_Missense_Mutation_p.G121R	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	121					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TACCTGTTTTGGGGGTTTTCA	0.428													22	50					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175897656	175897656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:175897656C>T	uc003iuc.2	+	5	1650	c.980C>T	c.(979-981)TCA>TTA	p.S327L	ADAM29_uc003iud.2_Missense_Mutation_p.S327L|ADAM29_uc010irr.2_Missense_Mutation_p.S327L|ADAM29_uc011cki.1_Missense_Mutation_p.S327L	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	327	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GGCACTTTTTCAATTGCAGTG	0.408													49	139					0	0	1	0	0
ENPP6	133121	broad.mit.edu	37	4	185038969	185038969	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:185038969C>T	uc003iwc.2	-	4	760	c.618G>A	c.(616-618)AGG>AGA	p.R206R		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	206	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		GGGCATCTTTCCTCTGCGGAG	0.582													51	71					0	0	1	0	0
CASP3	836	broad.mit.edu	37	4	185550603	185550603	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr4:185550603A>G	uc003iwh.2	-	8	920	c.657T>C	c.(655-657)CTT>CTC	p.L219L	CASP3_uc003iwg.2_Missense_Mutation_p.F179S|CASP3_uc003iwi.2_Silent_p.L219L	NM_004346	NP_004337	P42574	CASP3_HUMAN	caspase 3 preproprotein	219					activation of caspase activity by cytochrome c|DNA fragmentation involved in apoptotic nuclear change|negative regulation of apoptosis|nerve growth factor receptor signaling pathway|nuclear fragmentation involved in apoptotic nuclear change|proteolysis|response to tumor necrosis factor	cytosol|mitochondrion|nucleoplasm|plasma membrane	cysteine-type endopeptidase activity|protein binding			kidney(1)	1		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.057)|all_hematologic(60;0.0592)		all cancers(43;2.05e-27)|Epithelial(43;4.27e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.04e-11)|Colorectal(24;2e-05)|STAD - Stomach adenocarcinoma(60;2.35e-05)|GBM - Glioblastoma multiforme(59;4.94e-05)|COAD - Colon adenocarcinoma(29;0.00017)|BRCA - Breast invasive adenocarcinoma(30;0.000218)|LUSC - Lung squamous cell carcinoma(40;0.00904)|READ - Rectum adenocarcinoma(43;0.161)	Melatonin(DB01065)|Minocycline(DB01017)|Simvastatin(DB00641)	GCATGGCACAAAGCGACTGGA	0.408													22	27					0	0	1	0	0
SLC6A19	340024	broad.mit.edu	37	5	1219126	1219126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:1219126G>A	uc003jbw.3	+	9	1338	c.1282G>A	c.(1282-1284)GGG>AGG	p.G428R		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	428	Helical; Name=8; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CTTCTGCCTGGGGCTGTCATC	0.587													19	20					0	0	1	0	0
LPCAT1	79888	broad.mit.edu	37	5	1494882	1494882	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:1494882G>A	uc003jcm.2	-	3	543	c.426C>T	c.(424-426)ATC>ATT	p.I142I		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	142	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		TGGTCACAGGGATGGCGTCGA	0.657													8	78					0	0	1	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629674	9629674	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:9629674C>T	uc003jem.1	-	1	790	c.471G>A	c.(469-471)AGG>AGA	p.R157R		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	157	Extracellular (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						AGAAAAATTTCCTTAGGAAGT	0.398													8	55					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11022919	11022919	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:11022919G>A	uc003jfa.1	-	17	3106	c.2961C>T	c.(2959-2961)ATC>ATT	p.I987I	CTNND2_uc010itt.2_Silent_p.I896I|CTNND2_uc011cmy.1_Silent_p.I650I|CTNND2_uc011cmz.1_Silent_p.I554I|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.I579I	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	987	ARM 9.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CCAACTTCTCGATGCCACCGG	0.498													30	42					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11082893	11082893	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:11082893G>A	uc003jfa.1	-	16	2848	c.2703C>T	c.(2701-2703)CTC>CTT	p.L901L	CTNND2_uc010itt.2_Silent_p.L810L|CTNND2_uc011cmy.1_Silent_p.L564L|CTNND2_uc011cmz.1_Silent_p.L468L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.L493L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	901	ARM 8.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TGTCTATTCGGAGCAGCTCCA	0.552													13	66					0	0	1	0	0
CTNND2	1501	broad.mit.edu	37	5	11199605	11199605	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:11199605A>G	uc003jfa.1	-	11	2075	c.1930T>C	c.(1930-1932)TTA>CTA	p.L644L	CTNND2_uc010itt.2_Silent_p.L553L|CTNND2_uc011cmy.1_Silent_p.L307L|CTNND2_uc011cmz.1_Silent_p.L211L|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Silent_p.L211L	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	644	ARM 4.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TTGCGGAGTAACCTCACCAGT	0.438													17	174					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13788875	13788875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:13788875C>T	uc003jfd.2	-	51	8639	c.8597G>A	c.(8596-8598)GGA>GAA	p.G2866E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2866					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTGTCAATTCCACAATCCAC	0.413									Kartagener_syndrome				12	126					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13794139	13794139	+	Missense_Mutation	SNP	C	T	T	rs140968268		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:13794139C>T	uc003jfd.2	-	48	7958	c.7916G>A	c.(7915-7917)CGA>CAA	p.R2639Q		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2639	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity	p.R2639Q(1)		ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TGTACCCATTCGTTTATCCAC	0.368									Kartagener_syndrome				30	27					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13824440	13824440	+	Silent	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:13824440A>C	uc003jfd.2	-	39	6489	c.6447T>G	c.(6445-6447)GTT>GTG	p.V2149V		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2149	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGTCATAATGAACCTAGAGAA	0.383									Kartagener_syndrome				30	23					0	0	1	0	0
FBXL7	23194	broad.mit.edu	37	5	15928557	15928557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:15928557C>T	uc003jfn.1	+	3	1167	c.686C>T	c.(685-687)GCC>GTC	p.A229V		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	229	LRR 3.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						TCCAACGAGGCCGTCTTTGAT	0.577													32	49					0	0	1	0	0
CDH18	1016	broad.mit.edu	37	5	19473519	19473519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:19473519G>A	uc003jgc.2	-	12	2566	c.2189C>T	c.(2188-2190)CCC>CTC	p.P730L	CDH18_uc003jgd.2_Missense_Mutation_p.P730L|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	730	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GTCATAAGGGGGAACGCTAGG	0.488													28	26					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24487920	24487920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:24487920C>T	uc003jgr.1	-	12	2551	c.2219G>A	c.(2218-2220)GGA>GAA	p.G740E	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	740	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GGAATCATTTCCTTCATAGGC	0.463										HNSCC(23;0.051)			18	111					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31323108	31323108	+	Missense_Mutation	SNP	G	A	A	rs138589959		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:31323108G>A	uc003jhe.1	+	12	2392	c.2066G>A	c.(2065-2067)CGA>CAA	p.R689Q		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	689	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding	p.R689Q(1)		ovary(4)|skin(2)|large_intestine(1)	7						AACAAATTACGAAGGGACATT	0.498													12	57					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32089355	32089355	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:32089355G>A	uc003jhl.2	+	20	6189	c.5801G>A	c.(5800-5802)CGG>CAG	p.R1934Q	PDZD2_uc003jhm.2_Missense_Mutation_p.R1934Q	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1934					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GTGTCACAGCGGCTCCATGTA	0.597													14	74					0	0	1	0	0
PRLR	5618	broad.mit.edu	37	5	35070248	35070248	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:35070248C>T	uc003jjm.2	-	7	1193	c.663G>A	c.(661-663)GCG>GCA	p.A221A	PRLR_uc003jjg.1_Silent_p.A221A|PRLR_uc003jjh.1_Silent_p.A221A|PRLR_uc003jji.1_Silent_p.A150A|PRLR_uc003jjj.1_Silent_p.A221A|PRLR_uc003jjk.1_Silent_p.A150A|PRLR_uc003jjl.3_Silent_p.A120A|PRLR_uc010iuw.1_Silent_p.A150A	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	221	Fibronectin type-III 2.|Extracellular (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	GAATGAAGGTCGCTGGACTCC	0.403													27	23					0	0	1	0	0
IL7R	3575	broad.mit.edu	37	5	35876305	35876305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:35876305C>T	uc003jjs.2	+	8	1186	c.1097C>T	c.(1096-1098)TCC>TTC	p.S366F	IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	366	Cytoplasmic (Potential).				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			AGAGATTCATCCCTCACATGC	0.537													27	36					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36039784	36039784	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:36039784A>G	uc003jjz.1	-	5	963	c.870T>C	c.(868-870)TTT>TTC	p.F290F	UGT3A2_uc011cos.1_Silent_p.F256F|UGT3A2_uc011cot.1_5'UTR	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	290	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAGAGTCCCCAAACTTGGCAA	0.448													14	42					0	0	1	0	0
UGT3A2	167127	broad.mit.edu	37	5	36049520	36049520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:36049520C>T	uc003jjz.1	-	4	407	c.314G>A	c.(313-315)GGA>GAA	p.G105E	UGT3A2_uc011cos.1_Missense_Mutation_p.G71E|UGT3A2_uc011cot.1_Intron	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	105	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTCAAATTTTCCTCTGTAAGA	0.284													4	16					0	0	1	0	0
C5orf42	65250	broad.mit.edu	37	5	37167250	37167250	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:37167250T>C	uc011cpa.1	-	35	7530	c.7299A>G	c.(7297-7299)CTA>CTG	p.L2433L	C5orf42_uc011coy.1_Silent_p.L933L|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Silent_p.L1508L	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2433										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			AATTATGTGTTAGTTTCTGTT	0.338													23	29					0	0	1	0	0
EGFLAM	133584	broad.mit.edu	37	5	38352349	38352349	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:38352349C>T	uc003jlc.1	+	5	785	c.461C>T	c.(460-462)TCG>TTG	p.S154L	EGFLAM_uc003jlb.1_Missense_Mutation_p.S154L	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	154	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ATTGTGGTTTCGGATTCTGAG	0.522													14	130					0	0	1	0	0
FYB	2533	broad.mit.edu	37	5	39153581	39153581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:39153581G>A	uc003jls.2	-	2	1328	c.1261C>T	c.(1261-1263)CCC>TCC	p.P421S	FYB_uc003jlt.2_Missense_Mutation_p.P421S|FYB_uc003jlu.2_Missense_Mutation_p.P421S|FYB_uc011cpl.1_Missense_Mutation_p.P431S	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	421	Interaction with SKAP1.				cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			ATGTTTCTGGGAGGTAGGCTT	0.493													106	103					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41010144	41010144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:41010144G>A	uc003jmj.3	-	31	3663	c.3173C>T	c.(3172-3174)CCA>CTA	p.P1058L	HEATR7B2_uc003jmi.3_Missense_Mutation_p.P613L	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1058	HEAT 11.						binding			ovary(6)|central_nervous_system(2)	8						TCTGAGGACTGGCATGTGATG	0.398													15	21					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41049481	41049481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:41049481C>T	uc003jmj.3	-	14	1892	c.1402G>A	c.(1402-1404)GAG>AAG	p.E468K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E23K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	468							binding			ovary(6)|central_nervous_system(2)	8						AACAGGGGCTCCAGAGCTTCT	0.483													6	26					0	0	1	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41057250	41057250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:41057250C>T	uc003jmj.3	-	9	1370	c.880G>A	c.(880-882)GAA>AAA	p.E294K	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	294	HEAT 3.						binding			ovary(6)|central_nervous_system(2)	8						ATTTCATTTTCCTTTACTGGA	0.403													12	13					0	0	1	0	0
C6	729	broad.mit.edu	37	5	41203208	41203208	+	Missense_Mutation	SNP	C	T	T	rs138105385		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:41203208C>T	uc003jmk.2	-	2	335	c.125G>A	c.(124-126)GGA>GAA	p.G42E	C6_uc003jml.1_Missense_Mutation_p.G42E	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	42	TSP type-1 1.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding	p.G42E(1)		ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GCTCTGGGTTCCAGAATTGCA	0.488													29	182					0	0	1	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382221	41382221	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:41382221C>T	uc003jmm.1	-	2	621	c.519G>A	c.(517-519)GCG>GCA	p.A173A		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	173	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						GGGCAAAAATCGCTGGGCACA	0.428													13	132					0	0	1	0	0
PAIP1	10605	broad.mit.edu	37	5	43556007	43556007	+	Silent	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:43556007T>A	uc003job.2	-	2	607	c.360A>T	c.(358-360)GTA>GTT	p.V120V	PAIP1_uc003joa.2_Silent_p.V41V|PAIP1_uc010ivp.2_Silent_p.V41V|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Silent_p.V8V	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	120	PABPC1-interacting motif-2 (PAM2).				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					ATACAGGAGCTACAACCACCT	0.473													125	129					0	0	1	0	0
HCN1	348980	broad.mit.edu	37	5	45262838	45262838	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:45262838C>T	uc003jok.2	-	8	1883	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	620	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TTGAGGATTTCGTTCTCCTGA	0.418													6	51					0	0	1	0	0
EMB	133418	broad.mit.edu	37	5	49699026	49699026	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:49699026T>A	uc003jom.2	-	6	1112	c.863A>T	c.(862-864)AAA>ATA	p.K288I	EMB_uc010ivq.2_Missense_Mutation_p.K82I|EMB_uc003jol.2_Missense_Mutation_p.K219I|EMB_uc011cpy.1_Missense_Mutation_p.K238I|EMB_uc010ivr.2_Missense_Mutation_p.K234I	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	288	Cytoplasmic (Potential).					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				GTGCTTCTTTTTCTTTTGTGT	0.323													25	21					0	0	1	0	0
EMB	133418	broad.mit.edu	37	5	49707169	49707169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:49707169G>A	uc003jom.2	-	3	494	c.245C>T	c.(244-246)TCT>TTT	p.S82F	EMB_uc003jol.2_Missense_Mutation_p.S13F|EMB_uc011cpy.1_Missense_Mutation_p.S32F|EMB_uc010ivr.2_Intron	NM_198449	NP_940851	Q6PCB8	EMB_HUMAN	embigin precursor	82	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	Lung SC(58;0.218)	Lung NSC(810;0.0795)				ATTTACATTAGAAGGCCTTTC	0.328													16	66					0	0	1	0	0
PARP8	79668	broad.mit.edu	37	5	50129841	50129841	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:50129841T>G	uc003jon.3	+	25	2518	c.2336T>G	c.(2335-2337)TTC>TGC	p.F779C	PARP8_uc011cpz.1_Missense_Mutation_p.F671C|PARP8_uc003joo.2_Missense_Mutation_p.F779C|PARP8_uc003jop.2_Missense_Mutation_p.F737C	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	779	PARP catalytic.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				CAATCCCAATTCCTGCAAAGC	0.318													43	32					0	0	1	0	0
CDC20B	166979	broad.mit.edu	37	5	54429251	54429251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:54429251C>T	uc003jpo.1	-	6	861	c.686G>A	c.(685-687)CGA>CAA	p.R229Q	CDC20B_uc003jpn.1_Missense_Mutation_p.R229Q|CDC20B_uc010ivu.1_Missense_Mutation_p.R229Q|CDC20B_uc010ivv.1_Missense_Mutation_p.R229Q	NM_152623	NP_689836	Q86Y33	CD20B_HUMAN	CDC20 cell division cycle 20 homolog B isoform	229	WD 1.										0		Lung NSC(810;0.000744)|Breast(144;0.159)|Prostate(74;0.194)	LUSC - Lung squamous cell carcinoma(15;0.225)			GTAGTCATTTCGAAGACCAGT	0.343													11	54					0	0	1	0	0
IL31RA	133396	broad.mit.edu	37	5	55202046	55202046	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:55202046T>C	uc003jql.2	+	9	1247	c.1182T>C	c.(1180-1182)GAT>GAC	p.D394D	IL31RA_uc003jqk.2_Silent_p.D394D|IL31RA_uc011cqj.1_Silent_p.D252D|IL31RA_uc003jqm.2_Silent_p.D362D|IL31RA_uc003jqn.2_Silent_p.D394D|IL31RA_uc010iwa.1_Silent_p.D362D|IL31RA_uc003jqo.2_Silent_p.D252D	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	362	Extracellular (Potential).|Fibronectin type-III 4.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				GGTTTCCGGATGTGGACTCAG	0.557													41	45					0	0	1	0	0
GAPT	202309	broad.mit.edu	37	5	57790723	57790723	+	Silent	SNP	C	T	T	rs138779343		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:57790723C>T	uc003jro.1	+	3	754	c.360C>T	c.(358-360)TTC>TTT	p.F120F		NM_152687	NP_689900	Q8N292	GAPT_HUMAN	GRB2-binding adaptor protein, transmembrane	120					B cell activation	integral to membrane|plasma membrane					0						AGTCTAATTTCGAGGAGCATA	0.388													44	37					0	0	1	0	0
ELOVL7	79993	broad.mit.edu	37	5	60067751	60067751	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:60067751A>T	uc003jsi.3	-	4	434	c.234T>A	c.(232-234)TTT>TTA	p.F78L	ELOVL7_uc011cqo.1_Intron|ELOVL7_uc010iwk.2_Missense_Mutation_p.F78L|ELOVL7_uc003jsj.3_Missense_Mutation_p.F65L	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	78	Helical; (Potential).				fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				TATACACAGAAAAGAGTACTA	0.348													12	12					0	0	1	0	0
RNF180	285671	broad.mit.edu	37	5	63509400	63509400	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:63509400G>A	uc003jti.2	+	4	357	c.247G>A	c.(247-249)GGA>AGA	p.G83R	RNF180_uc003jth.3_Missense_Mutation_p.G83R|RNF180_uc010iws.2_Intron	NM_001113561	NP_001107033	Q86T96	RN180_HUMAN	ring finger protein 180 isoform 1	83	Cytoplasmic (Potential).					integral to membrane|nuclear envelope	zinc ion binding				0		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0848)|Colorectal(97;0.234)		Lung(70;0.114)		GTGGACAGTTGGAAAACTGAA	0.413													32	146					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64520782	64520782	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:64520782T>A	uc003jtp.2	-	17	2974	c.2160A>T	c.(2158-2160)GAA>GAT	p.E720D	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Missense_Mutation_p.E341D	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	720	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		TGAAGAACCCTTCAATGGCAT	0.498													13	18					0	0	1	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64521949	64521949	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:64521949C>T	uc003jtp.2	-	16	2845	c.2031G>A	c.(2029-2031)GCG>GCA	p.A677A	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.A298A	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	677					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		CCAGTGAATCCGCATTGCACT	0.433													10	81					0	0	1	0	0
MAP1B	4131	broad.mit.edu	37	5	71494885	71494885	+	Silent	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:71494885G>T	uc003kbw.3	+	5	5944	c.5703G>T	c.(5701-5703)GTG>GTT	p.V1901V	MAP1B_uc010iyw.1_Silent_p.V1918V|MAP1B_uc010iyx.1_Silent_p.V1775V|MAP1B_uc010iyy.1_Silent_p.V1775V	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1901	MAP1B 2.					microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		CCTCAGATGTGGGTGGCTATT	0.453													3	49					1	1	1	1	0
ZNF366	167465	broad.mit.edu	37	5	71757208	71757209	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:71757208_71757209GG>AA	uc003kce.1	-	2	301_302	c.115_116CC>TT	c.(115-117)CCC>TTC	p.P39F		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	39					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		GTGTCTTTGGGGAGCCTTTCCC	0.574													18	17					0	0	1	0	0
COL4A3BP	10087	broad.mit.edu	37	5	74695192	74695192	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:74695192G>A	uc011csu.1	-	11	1553	c.1131C>T	c.(1129-1131)TCC>TCT	p.S377S	COL4A3BP_uc003kds.2_Intron|COL4A3BP_uc003kdt.2_Silent_p.S505S|COL4A3BP_uc003kdu.2_Silent_p.S377S	NM_005713	NP_005704	Q9Y5P4	C43BP_HUMAN	alpha 3 type IV collagen binding protein isoform	377					ER to Golgi ceramide transport|immune response	cytosol|endoplasmic reticulum membrane|Golgi apparatus	ceramide binding|phosphatidylinositol-4-phosphate binding|protein binding|protein kinase activity			skin(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;1e-53)		TGGAAGACATGGAGGAAGAGC	0.433													19	19					0	0	1	0	0
POC5	134359	broad.mit.edu	37	5	75003612	75003612	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:75003612A>G	uc003keh.3	-	3	370	c.173T>C	c.(172-174)TTG>TCG	p.L58S	POC5_uc010izu.2_5'UTR|POC5_uc003keg.3_Missense_Mutation_p.L33S	NM_001099271	NP_001092741	Q8NA72	POC5_HUMAN	proteome of centriole 5 isoform 1	58					cell cycle	centriole				lung(1)	1						ATCTGGCACCAATTCTCCCTT	0.333													4	9					0	0	1	0	0
IQGAP2	10788	broad.mit.edu	37	5	75964559	75964559	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:75964559C>T	uc003kek.2	+	23	2955	c.2733C>T	c.(2731-2733)TCC>TCT	p.S911S	IQGAP2_uc010izv.2_Silent_p.S464S|IQGAP2_uc011csv.1_Silent_p.S407S|IQGAP2_uc003kel.2_Silent_p.S407S	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	911					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		AGAACAAGTCCACTAAATTTA	0.348													9	31					0	0	1	0	0
AGGF1	55109	broad.mit.edu	37	5	76332505	76332505	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:76332505G>A	uc003ket.2	+	4	1001	c.641G>A	c.(640-642)GGA>GAA	p.G214E	AGGF1_uc003keu.1_RNA	NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	214					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		GAAAATACTGGACTGTATTTT	0.318													31	54					0	0	1	0	0
AGGF1	55109	broad.mit.edu	37	5	76342465	76342465	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:76342465T>G	uc003ket.2	+	6	1524	c.1164T>G	c.(1162-1164)AGT>AGG	p.S388R		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	388					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		CCATTACCAGTGAAGGCAATG	0.373													15	98					0	0	1	0	0
AGGF1	55109	broad.mit.edu	37	5	76359010	76359011	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:76359010_76359011TC>AT	uc003ket.2	+	14	2438_2439	c.2078_2079TC>AT	c.(2077-2079)TTC>TAT	p.F693Y		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	693					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		ACTGAAAACTTCCCAGAAACTA	0.411													11	59					0	0	1	0	0
BHMT	635	broad.mit.edu	37	5	78417125	78417125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:78417125G>A	uc003kfu.3	+	5	667	c.562G>A	c.(562-564)GGC>AGC	p.G188S	BHMT_uc011cti.1_Intron	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	188	Hcy-binding.				protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	CATGTGCATTGGCCCAGAAGG	0.488													60	72					0	0	1	0	0
BHMT	635	broad.mit.edu	37	5	78426765	78426765	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:78426765G>A	uc003kfu.3	+	8	1152	c.1047G>A	c.(1045-1047)AAG>AAA	p.K349K	BHMT_uc011cti.1_Silent_p.K196K	NM_001713	NP_001704	Q93088	BHMT1_HUMAN	betaine-homocysteine methyltransferase	349					protein methylation|regulation of homocysteine metabolic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;1.88e-45)|Epithelial(54;8.07e-41)|all cancers(79;3.51e-36)	L-Methionine(DB00134)	GGGCCAGGAAGGAATACTGGG	0.463													63	105					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79026230	79026230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79026230C>T	uc003kgc.2	+	2	1714	c.1642C>T	c.(1642-1644)CCA>TCA	p.P548S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	548	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAAGCCCTTCCCACCACATAT	0.433													52	44					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79026348	79026348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79026348C>T	uc003kgc.2	+	2	1832	c.1760C>T	c.(1759-1761)TCT>TTT	p.S587F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	587	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAAATTGCATCTGTTTCTACT	0.423													37	204					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79026979	79026979	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79026979G>A	uc003kgc.2	+	2	2463	c.2391G>A	c.(2389-2391)TTG>TTA	p.L797L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	797						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ATTCAAAGTTGATCTCCAAAT	0.448													5	70					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79027796	79027796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79027796C>T	uc003kgc.2	+	2	3280	c.3208C>T	c.(3208-3210)CCT>TCT	p.P1070S		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1070						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TGAAACTTTCCCTTTGATGTC	0.433													9	16					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79029407	79029408	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79029407_79029408CC>AT	uc003kgc.2	+	2	4891_4892	c.4819_4820CC>AT	c.(4819-4821)CCA>ATA	p.P1607I		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1607						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GGGAGACTTCCCATCAGAAAAA	0.455													56	50					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79029724	79029724	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79029724A>T	uc003kgc.2	+	2	5208	c.5136A>T	c.(5134-5136)GAA>GAT	p.E1712D		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1712						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		AGAATGAAGAAATTAAACCTT	0.423													3	27					0	0	1	0	0
CMYA5	202333	broad.mit.edu	37	5	79031961	79031961	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79031961A>C	uc003kgc.2	+	2	7445	c.7373A>C	c.(7372-7374)GAT>GCT	p.D2458A		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2458						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAGAAGAAAGATAATTTGGAA	0.368													6	42					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79351785	79351785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79351785C>T	uc003kgh.2	+	4	793	c.470C>T	c.(469-471)CCC>CTC	p.P157L		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	157	TSP N-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		CACAATCTCCCCAGGGCCTTT	0.567													16	27					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	79655249	79655249	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:79655249C>A	uc003kgo.2	-	1	659	c.496G>T	c.(496-498)GGT>TGT	p.G166C						SubName: Full=Putative uncharacterized protein; Flags: Fragment;																		ccacgaccaccaccaAAGTTT	0.234													3	43					0.115264	0.115421	1	1	0
RASGRF2	5924	broad.mit.edu	37	5	80388739	80388739	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:80388739A>T	uc003kha.1	+	10	1510	c.1510A>T	c.(1510-1512)ATA>TTA	p.I504L	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	504	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		ACACTTTTTAATATGTACAAG	0.383													16	71					0	0	1	0	0
RASGRF2	5924	broad.mit.edu	37	5	80409364	80409364	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:80409364G>A	uc003kha.1	+	15	2095	c.2095G>A	c.(2095-2097)GAA>AAA	p.E699K	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	699	N-terminal Ras-GEF.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TAGGTCATTGGAATTGTTTTT	0.438													17	39					0	0	1	0	0
VCAN	1462	broad.mit.edu	37	5	82815539	82815539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:82815539G>A	uc003kii.3	+	7	1770	c.1414G>A	c.(1414-1416)GAT>AAT	p.D472N	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Missense_Mutation_p.D472N|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	472	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TTATGCTACGGATTCATGGGA	0.418													43	59					0	0	1	0	0
EDIL3	10085	broad.mit.edu	37	5	83239320	83239320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:83239320C>T	uc003kio.1	-	11	1780	c.1361G>A	c.(1360-1362)CGA>CAA	p.R454Q	EDIL3_uc003kip.1_Missense_Mutation_p.R444Q	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	454	F5/8 type C 2.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		TCTTATGTGTCGTGCATAGAT	0.468													6	74					0	0	1	0	0
CCNH	902	broad.mit.edu	37	5	86708573	86708573	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:86708573G>A	uc003kjb.2	-	1	271	c.39C>T	c.(37-39)TTC>TTT	p.F13F	CCNH_uc003kiz.1_5'Flank|CCNH_uc003kja.2_5'UTR	NM_001239	NP_001230	P51946	CCNH_HUMAN	cyclin H	13					G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|mRNA capping|nucleotide-excision repair, DNA damage removal|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|S phase of mitotic cell cycle|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	cyclin-dependent protein kinase activating kinase holoenzyme complex|holo TFIIH complex	protein kinase binding			ovary(2)|kidney(1)	3		all_cancers(142;8.25e-07)|Lung NSC(167;0.000185)|all_lung(232;0.000222)|Colorectal(57;0.00542)|Ovarian(174;0.0423)		OV - Ovarian serous cystadenocarcinoma(54;9.01e-39)|Epithelial(54;5.08e-33)|all cancers(79;4.28e-28)		CCTCGCTGGAGAAGGTCCAGT	0.572								Direct_reversal_of_damage|NER					18	34					0	0	1	0	0
POLR3G	10622	broad.mit.edu	37	5	89781431	89781431	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:89781431T>C	uc003kjq.2	+	2	247	c.47T>C	c.(46-48)ATT>ACT	p.I16T	POLR3G_uc011cuc.1_Missense_Mutation_p.I16T	NM_006467	NP_006458	O15318	RPC7_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	16					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|regulation of transcription from RNA polymerase III promoter|response to virus	DNA-directed RNA polymerase III complex	DNA-directed RNA polymerase activity				0		all_cancers(142;5.03e-09)|all_epithelial(76;1.23e-11)|Lung NSC(167;2.46e-05)|all_lung(232;3.25e-05)|Ovarian(174;0.00832)|Colorectal(57;0.122)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(54;2.74e-31)|Epithelial(54;8.2e-26)|all cancers(79;3.86e-22)		ACCTTTAATATTGAGGCTGTT	0.393													34	48					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89953946	89953946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:89953946G>A	uc003kju.2	+	21	4699	c.4603G>A	c.(4603-4605)GAG>AAG	p.E1535K	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1535	Calx-beta 10.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGACAATGACGAGGAAGGAGA	0.358													29	38					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89968362	89968362	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:89968362G>A	uc003kju.2	+	22	4849	c.4753_splice	c.e22-1	p.I1585_splice	GPR98_uc003kjt.2_Splice_Site|GPR98_uc010jba.1_5'Flank	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor						cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCAATTTCAGATTGCAGAGG	0.348													6	30					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89981753	89981753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:89981753G>A	uc003kju.2	+	29	6527	c.6431G>A	c.(6430-6432)GGA>GAA	p.G2144E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2144	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ACTAGAACAGGAGGAGCATTT	0.418													5	6					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90073770	90073770	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:90073770G>A	uc003kju.2	+	62	12672	c.12576G>A	c.(12574-12576)AGG>AGA	p.R4192R	GPR98_uc003kjt.2_Silent_p.R1898R	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4192	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGTTCTGGAGGATATTCCCTC	0.423													13	11					0	0	1	0	0
MCTP1	79772	broad.mit.edu	37	5	94248558	94248558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:94248558C>T	uc003kkx.2	-	9	1474	c.1474G>A	c.(1474-1476)GAT>AAT	p.D492N	MCTP1_uc003kkv.2_Missense_Mutation_p.D271N|MCTP1_uc003kkw.2_Missense_Mutation_p.D225N|MCTP1_uc003kkz.2_Missense_Mutation_p.D153N|MCTP1_uc003kku.2_Missense_Mutation_p.D8N	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	492	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		ACGTAGGGATCGCTCAACCCG	0.468													41	45					0	0	1	0	0
ERAP2	64167	broad.mit.edu	37	5	96249154	96249154	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:96249154C>T	uc003kmq.2	+	17	3360	c.2650C>T	c.(2650-2652)CTG>TTG	p.L884L	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Silent_p.L884L|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Silent_p.L833L|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	884	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		GACCCATCTTCTGAAAAAGTT	0.413													4	27					0	0	1	0	0
CAMK4	814	broad.mit.edu	37	5	110710562	110710562	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:110710562C>T	uc011cvj.1	+	4	354	c.255C>T	c.(253-255)ATC>ATT	p.I85I	CAMK4_uc003kpf.2_Silent_p.I85I|CAMK4_uc010jbv.2_Intron	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	85	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		ACAAAAAAATCGTAAGAACTG	0.378													3	30					0	0	1	0	0
EPB41L4A	64097	broad.mit.edu	37	5	111540123	111540123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:111540123C>T	uc003kpv.1	-	15	1599	c.1325G>A	c.(1324-1326)CGA>CAA	p.R442Q	EPB41L4A_uc003kpp.1_Missense_Mutation_p.R69Q	NM_022140	NP_071423	Q9HCS5	E41LA_HUMAN	erythrocyte protein band 4.1-like 4	442						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(142;4.93e-06)|all_epithelial(76;2.28e-08)|Prostate(80;0.000244)|Colorectal(10;0.000788)|Ovarian(225;0.0448)|Lung NSC(167;0.126)|all_lung(232;0.135)		OV - Ovarian serous cystadenocarcinoma(64;6.24e-09)|Epithelial(69;1.43e-07)|all cancers(49;2.78e-05)|COAD - Colon adenocarcinoma(37;0.0467)|Colorectal(14;0.0791)		GGAGGGGTTTCGGCGACGCGT	0.478													19	158					0	0	1	0	0
APC	324	broad.mit.edu	37	5	112173567	112173567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:112173567C>T	uc010jby.2	+	16	2656	c.2276C>T	c.(2275-2277)GCC>GTC	p.A759V	APC_uc011cvt.1_Missense_Mutation_p.A741V|APC_uc003kpz.3_Missense_Mutation_p.A759V|APC_uc003kpy.3_Missense_Mutation_p.A759V|APC_uc010jbz.2_Missense_Mutation_p.A476V|APC_uc010jca.2_Missense_Mutation_p.A59V	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	759	Ser-rich.|ARM 7.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)|p.A759fs*2(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		AAACAAAAAGCCCTAGAAGCA	0.408		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			6	28					0	0	1	0	0
TRIM36	55521	broad.mit.edu	37	5	114499295	114499295	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:114499295G>A	uc003kqs.2	-	2	727	c.218C>T	c.(217-219)TCA>TTA	p.S73L	TRIM36_uc011cwc.1_Missense_Mutation_p.S61L|TRIM36_uc003kqt.2_Intron	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	73	RING-type; degenerate.					acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		GGAGTTGTCTGATCCCACATC	0.443													55	58					0	0	1	0	0
CDO1	1036	broad.mit.edu	37	5	115146917	115146917	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:115146917T>C	uc003krg.2	-	3	655	c.344A>G	c.(343-345)AAT>AGT	p.N115S		NM_001801	NP_001792	Q16878	CDO1_HUMAN	cysteine dioxygenase	115					inflammatory response|sulfur amino acid biosynthetic process|taurine biosynthetic process	cytosol	cysteine dioxygenase activity			large_intestine(1)|skin(1)	2		all_cancers(142;0.0046)|all_epithelial(76;0.000161)|Prostate(80;0.0132)|Ovarian(225;0.0776)		OV - Ovarian serous cystadenocarcinoma(64;7.8e-08)|Epithelial(69;7.32e-07)|all cancers(49;3.24e-05)	L-Cysteine(DB00151)|NADH(DB00157)	GACCATCTCATTGGATTTTTT	0.408													26	171					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115341615	115341615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:115341615C>T	uc003kro.2	+	13	2208	c.2044C>T	c.(2044-2046)CCT>TCT	p.P682S	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	682	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						GCAGGCGATTCCTGTTATTCA	0.363													9	30					0	0	1	0	0
FAM170A	340069	broad.mit.edu	37	5	118970116	118970116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:118970116G>A	uc003ksm.2	+	3	883	c.673G>A	c.(673-675)GAG>AAG	p.E225K	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.E225K|FAM170A_uc003kso.2_Missense_Mutation_p.E178K	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	225						intracellular	zinc ion binding			skin(1)	1						GGTGACCATGGAGAACGGCTT	0.587													23	133					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127671155	127671155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:127671155G>A	uc003kuu.2	-	29	4278	c.3839C>T	c.(3838-3840)TCG>TTG	p.S1280L	FBN2_uc003kuv.2_Missense_Mutation_p.S1247L	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1280	EGF-like 19; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		ACCTGCACACGATCTCCCATC	0.433													26	141					0	0	1	0	0
FBN2	2201	broad.mit.edu	37	5	127671209	127671209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:127671209C>T	uc003kuu.2	-	29	4224	c.3785G>A	c.(3784-3786)GGA>GAA	p.G1262E	FBN2_uc003kuv.2_Missense_Mutation_p.G1229E	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1262	EGF-like 19; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TTCGTAGCTTCCCTCTGAATT	0.453													91	91					0	0	1	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129072803	129072803	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:129072803C>T	uc003kvb.1	+	23	3516	c.3516C>T	c.(3514-3516)TAC>TAT	p.Y1172Y	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1172	PLAC.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GGCCAGTGTACTGCCGAGTGA	0.468													44	42					0	0	1	0	0
RAPGEF6	51735	broad.mit.edu	37	5	131132539	131132539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:131132539G>A	uc003kvp.1	-	1	218	c.76C>T	c.(76-78)CCA>TCA	p.P26S	FNIP1_uc003kvs.1_Missense_Mutation_p.P26S|FNIP1_uc003kvt.1_Missense_Mutation_p.P26S|FNIP1_uc010jdm.1_Missense_Mutation_p.P26S|FNIP1_uc003kvu.2_Missense_Mutation_p.P26S	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	Error:Variant_position_missing_in_Q8TEU7_after_alignment					Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		CCGCAATCTGGGTCCCGGGCG	0.721													3	2					0	0	1	0	0
SEPT8	23176	broad.mit.edu	37	5	132101146	132101146	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:132101146T>A	uc003kxr.2	-	2	344	c.106A>T	c.(106-108)AGC>TGC	p.S36C	SEPT8_uc003kxs.1_Missense_Mutation_p.S36C|SEPT8_uc003kxu.2_Missense_Mutation_p.S36C|SEPT8_uc011cxi.1_Missense_Mutation_p.S36C|SEPT8_uc003kxv.2_Missense_Mutation_p.S36C|SEPT8_uc003kxt.2_5'UTR	NM_001098811	NP_001092281	Q92599	SEPT8_HUMAN	septin 8 isoform a	36					cell cycle	septin complex	GTP binding|protein binding			ovary(2)	2		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACCGACTTGCTGACCAGCTGG	0.602													24	132					0	0	1	0	0
BRD8	10902	broad.mit.edu	37	5	137498918	137498918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:137498918G>A	uc003lcf.1	-	15	2043	c.1988C>T	c.(1987-1989)CCT>CTT	p.P663L	BRD8_uc003lcc.1_RNA|BRD8_uc011cyl.1_Missense_Mutation_p.P442L|BRD8_uc003lcg.2_Missense_Mutation_p.P736L|BRD8_uc003lci.2_Missense_Mutation_p.P666L|BRD8_uc003lch.2_Missense_Mutation_p.P557L|BRD8_uc011cym.1_Missense_Mutation_p.P647L|BRD8_uc010jer.1_Missense_Mutation_p.P632L|BRD8_uc011cyn.1_Missense_Mutation_p.P622L	NM_139199	NP_631938	Q9H0E9	BRD8_HUMAN	bromodomain containing 8 isoform 2	663					cell surface receptor linked signaling pathway|histone H2A acetylation|histone H4 acetylation|regulation of growth|regulation of transcription from RNA polymerase II promoter	mitochondrion|NuA4 histone acetyltransferase complex	sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			CTCGCTCACAGGAGGTTCATT	0.517													36	42					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139862184	139862184	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:139862184G>A	uc003lfs.1	+	11	1926	c.1802G>A	c.(1801-1803)GGA>GAA	p.G601E	ANKHD1_uc003lfq.1_Missense_Mutation_p.G620E|ANKHD1_uc003lfr.2_Missense_Mutation_p.G601E|ANKHD1_uc003lft.1_Missense_Mutation_p.G81E|ANKHD1_uc003lfu.1_Missense_Mutation_p.G81E|ANKHD1_uc003lfv.1_5'Flank	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	601						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTGAAGGTGGAAGAACACCT	0.368													7	64					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175450	140175450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140175450G>A	uc003lhd.2	+	1	1007	c.901G>A	c.(901-903)GAA>AAA	p.E301K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.E301K|PCDHA2_uc011czy.1_Missense_Mutation_p.E301K	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	301	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATCTCAGGGGAAATCAGAAC	0.433													12	50					0	0	1	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176856	140176856	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140176856C>T	uc003lhd.2	+	1	2413	c.2307C>T	c.(2305-2307)CTC>CTT	p.L769L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L769L|PCDHA2_uc011czy.1_Silent_p.L769L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	769	Cytoplasmic (Potential).|5 X 4 AA repeats of P-X-X-P.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGACGGACCTCATGGCCTTCA	0.572													6	60					0	0	1	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181170	140181170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140181170G>A	uc003lhf.2	+	1	388	c.388G>A	c.(388-390)GCG>ACG	p.A130T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.A130T	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	130	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAATGACAACGCGCCAGTTTT	0.547													72	70					0	0	1	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188875	140188875	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140188875C>T	uc003lhi.2	+	1	2204	c.2103C>T	c.(2101-2103)ATC>ATT	p.I701I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.I701I|PCDHA4_uc011daa.1_Silent_p.I701I	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	701	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TATACCTGATCATTGCCATCT	0.657													6	56					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203457	140203457	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140203457G>A	uc003lhl.2	+	1	2097	c.2097G>A	c.(2095-2097)CTG>CTA	p.L699L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.L699L|PCDHA5_uc003lhj.1_Silent_p.L699L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	699	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGTGTACCTGATCATCGCCA	0.687													11	107					0	0	1	0	0
PCDHA9	9752	broad.mit.edu	37	5	140228437	140228437	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140228437G>A	uc003lhu.2	+	1	1081	c.357G>A	c.(355-357)GTG>GTA	p.V119V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.V119V	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	119	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTTCCATGTGGACGTGGAGG	0.577													108	54					0	0	1	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249145	140249145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140249145C>T	uc003lia.2	+	1	1315	c.457C>T	c.(457-459)CCA>TCA	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.P153S	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	153	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGCGTTTTCCACTAGAGGG	0.448													85	75					0	0	1	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256676	140256676	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140256676C>A	uc003lic.2	+	1	1746	c.1619C>A	c.(1618-1620)GCC>GAC	p.A540D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.A540D	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	540	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCGCGACGCCGGCGTGCCG	0.692													89	80					4.85238e-36	4.9704e-36	1	1	0
PCDHAC2	56134	broad.mit.edu	37	5	140347604	140347604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140347604C>T	uc003lii.2	+	1	1493	c.1253C>T	c.(1252-1254)TCC>TTC	p.S418F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.S418F	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	418	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTGGAAACTCCTATACACTG	0.582													14	99					0	0	1	0	0
PCDHB2	56133	broad.mit.edu	37	5	140474567	140474567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140474567G>A	uc003lil.2	+	1	331	c.193G>A	c.(193-195)GGG>AGG	p.G65R	PCDHB2_uc003lim.1_Intron	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	65	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCTGTGAGGGGGGCCAGGGT	0.507													10	57					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140515442	140515442	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140515442C>T	uc003liq.2	+	1	643	c.426C>T	c.(424-426)ATC>ATT	p.I142I		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	142	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCTAAAAATCCCAGAGAGCA	0.438													30	33					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516330	140516330	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140516330C>T	uc003liq.2	+	1	1531	c.1314C>T	c.(1312-1314)GTC>GTT	p.V438V		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	438	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACATAACGGTCCTGGTCTCCG	0.577													91	85					0	0	1	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553107	140553107	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140553107C>T	uc003lit.2	+	1	865	c.691C>T	c.(691-693)CTG>TTG	p.L231L		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	231	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGTGCGCATTCTGGTTCTAGA	0.547													34	38					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558223	140558223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140558223G>A	uc011dai.1	+	1	794	c.608G>A	c.(607-609)CGA>CAA	p.R203Q	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	203	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGCTGGACCGAGAGGAAGAA	0.532													3	27					0	0	1	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558692	140558692	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140558692G>A	uc011dai.1	+	1	1263	c.1077G>A	c.(1075-1077)GAG>GAA	p.E359E	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	359	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAATACCTGAGAATGCGCCTG	0.453													25	183					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562668	140562668	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140562668C>T	uc003liv.2	+	1	1689	c.534C>T	c.(532-534)TTC>TTT	p.F178F	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	178	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCTCATTTCCGGGTTCTAA	0.448													12	19					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140564423	140564423	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140564423G>A	uc003liv.2	+	1	3444	c.2289G>A	c.(2287-2289)GAG>GAA	p.E763E	PCDHB9_uc003liw.1_5'Flank	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	763	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAACAAGTGAGTTCAAGTTCC	0.493													55	70					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625297	140625297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140625297G>A	uc003lje.2	+	1	151	c.151G>A	c.(151-153)GAC>AAC	p.D51N		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	51	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTGGCCAATGACCTAGGGCT	0.562													16	65					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625947	140625947	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140625947G>A	uc003lje.2	+	1	801	c.801G>A	c.(799-801)AGG>AGA	p.R267R		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	267	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCTCTGCTAGGGATTTAGACA	0.498													4	23					0	0	1	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710953	140710953	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140710953T>A	uc003lji.1	+	1	702	c.702T>A	c.(700-702)GAT>GAA	p.D234E	PCDHGA1_uc011dan.1_Missense_Mutation_p.D234E	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	234	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGGTGGATGCAAATGACA	0.498													8	41					0	0	1	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720594	140720594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140720594G>A	uc003ljk.1	+	1	2241	c.2056G>A	c.(2056-2058)GAT>AAT	p.D686N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc011dao.1_Missense_Mutation_p.D686N	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	686	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CATACCCAACGATTCGGACCT	0.682													26	167					0	0	1	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731925	140731925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140731925C>T	uc003ljo.1	+	1	2098	c.2098C>T	c.(2098-2100)CTC>TTC	p.L700F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGA4_uc003ljq.1_5'Flank|PCDHGB1_uc011daq.1_Missense_Mutation_p.L700F|PCDHGA4_uc003ljp.1_5'Flank	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	700	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGTGCTCTTTCTCCTCGCGGT	0.607													30	182					0	0	1	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140764153	140764153	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140764153C>T	uc003lka.1	+	1	1687	c.1687C>T	c.(1687-1689)CTG>TTG	p.L563L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Silent_p.L563L	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	563	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCCGAGATCCTGTACCCGGC	0.622													24	154					0	0	1	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140792983	140792983	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140792983C>T	uc003lkl.1	+	1	241	c.241C>T	c.(241-243)CTG>TTG	p.L81L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Silent_p.L81L	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	81	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTTTTCTCTCTGAACCCGCG	0.622													62	77					0	0	1	0	0
PCDHGB8P	56120	broad.mit.edu	37	5	140807510	140807510	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140807510C>T	uc011daz.1	+	1	1658	c.1299C>T	c.(1297-1299)CTC>CTT	p.L433L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc011dba.1_5'Flank|PCDHGA12_uc003lkt.1_5'Flank	NR_001297				Homo sapiens PCDH-psi3 pseudogene, mRNA sequence.												0						TGGGCGACCTCAATGACAATG	0.672													3	29					0	0	1	0	0
PCDHGC3	5098	broad.mit.edu	37	5	140857731	140857731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:140857731C>T	uc003lkv.1	+	1	2163	c.2048C>T	c.(2047-2049)CCC>CTC	p.P683L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lku.1_Missense_Mutation_p.P683L|PCDHGC3_uc003lkw.1_Intron	NM_002588	NP_002579	Q9UN70	PCDGK_HUMAN	protocadherin gamma subfamily C, 3 isoform 1	683	Extracellular (Potential).|Cadherin 6.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCTCTGCCCCCCGGGAGCAG	0.512											OREG0016865	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	73	98					0	0	1	0	0
FCHSD1	89848	broad.mit.edu	37	5	141027087	141027087	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:141027087C>T	uc003llk.2	-	9	757	c.706G>A	c.(706-708)GCC>ACC	p.A236T	FCHSD1_uc010jgg.2_5'UTR|FCHSD1_uc003llj.2_RNA	NM_033449	NP_258260	Q86WN1	FCSD1_HUMAN	FCH and double SH3 domains 1	236									FCHSD1/BRAF(2)	skin(2)|ovary(1)|central_nervous_system(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGACCAGGGCCTAGAGAGAA	0.572													26	31					0	0	1	0	0
PCDH1	5097	broad.mit.edu	37	5	141248677	141248677	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:141248677G>A	uc003llq.2	-	2	477	c.360C>T	c.(358-360)CTC>CTT	p.L120L	PCDH1_uc003llp.2_Silent_p.L120L|PCDH1_uc011dbf.1_Silent_p.L98L	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	120	Extracellular (Potential).|Cadherin 1.				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		GGCATTCACGGAGCCCCTCAC	0.592													29	33					0	0	1	0	0
ARHGAP26	23092	broad.mit.edu	37	5	142593624	142593624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:142593624C>T	uc011dbj.1	+	22	2362	c.2327C>T	c.(2326-2328)TCG>TTG	p.S776L	ARHGAP26_uc003lmt.2_Missense_Mutation_p.S721L|ARHGAP26_uc003lmw.2_Missense_Mutation_p.S684L	NM_015071	NP_055886	Q9UNA1	RHG26_HUMAN	GTPase regulator associated with the focal	776	SH3.				actin cytoskeleton organization|filopodium assembly|nervous system development|small GTPase mediated signal transduction	cytoskeleton|cytosol|focal adhesion	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(1)	1		all_hematologic(541;0.0416)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCAGAACTTTCGTTCACAGCA	0.483													6	10					0	0	1	0	0
NR3C1	2908	broad.mit.edu	37	5	142779434	142779434	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:142779434A>T	uc003lmz.2	-	2	1463	c.971T>A	c.(970-972)GTG>GAG	p.V324E	NR3C1_uc003lmy.2_Missense_Mutation_p.V324E|NR3C1_uc003lna.2_Missense_Mutation_p.V324E|NR3C1_uc003lnb.2_Missense_Mutation_p.V324E|NR3C1_uc011dbk.1_Intron|NR3C1_uc003lnc.2_Missense_Mutation_p.V324E|NR3C1_uc003lnd.2_Missense_Mutation_p.V324E|NR3C1_uc003lne.2_Missense_Mutation_p.V324E|NR3C1_uc003lnf.2_Missense_Mutation_p.V324E|NR3C1_uc003lng.2_Missense_Mutation_p.V324E|NR3C1_uc003lnh.2_Missense_Mutation_p.V324E|NR3C1_uc003lni.2_Missense_Mutation_p.V324E	NM_000176	NP_000167	P04150	GCR_HUMAN	glucocorticoid receptor isoform alpha	324	Modulating.				chromatin modification|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus|transcription from RNA polymerase II promoter	mitochondrial matrix|nucleoplasm	glucocorticoid receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(2;3.2e-05)|all_hematologic(2;0.000361)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)		Amcinonide(DB00288)|Betamethasone(DB00443)|Budesonide(DB01222)|Dexamethasone(DB01234)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluticasone Propionate(DB00588)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Loteprednol Etabonate(DB00873)|Methylprednisolone(DB00959)|Mifepristone(DB00834)|Mometasone(DB00764)|Prednisone(DB00635)	AGAGGTACTCACACCATGAAC	0.403													55	64					0	0	1	0	0
KCTD16	57528	broad.mit.edu	37	5	143853255	143853255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:143853255G>A	uc003lnm.1	+	4	1494	c.865G>A	c.(865-867)GAT>AAT	p.D289N	KCTD16_uc003lnn.1_Missense_Mutation_p.D289N	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	289						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CTCACACTGCGATTGCTGCTG	0.527													10	77					0	0	1	0	0
GRXCR2	643226	broad.mit.edu	37	5	145246173	145246173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:145246173G>A	uc003lns.1	-	2	455	c.455C>T	c.(454-456)GCT>GTT	p.A152V		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	152											0						CTCTTCCTCAGCCTCCTCTTC	0.443													12	76					0	0	1	0	0
TCERG1	10915	broad.mit.edu	37	5	145851121	145851121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:145851121C>T	uc003lob.2	+	9	1623	c.1583C>T	c.(1582-1584)CCT>CTT	p.P528L	TCERG1_uc003loc.2_Missense_Mutation_p.P507L|TCERG1_uc011dbt.1_Missense_Mutation_p.P507L	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	528	WW 3.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCTACTGCTCCTATTCCTGGT	0.299													4	57					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147012260	147012260	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:147012260G>A	uc003loq.1	-	13	2141	c.1759C>T	c.(1759-1761)CGA>TGA	p.R587*	JAKMIP2_uc011dbx.1_Nonsense_Mutation_p.R545*|JAKMIP2_uc003lor.1_Nonsense_Mutation_p.R566*|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Nonsense_Mutation_p.R587*	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	587	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTAGGTTTCGAAACTCCAGC	0.289													65	86					0	0	1	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147029951	147029951	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:147029951G>A	uc003loq.1	-	4	1169	c.787C>T	c.(787-789)CGA>TGA	p.R263*	JAKMIP2_uc011dbx.1_Nonsense_Mutation_p.R221*|JAKMIP2_uc003lor.1_Nonsense_Mutation_p.R263*|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Nonsense_Mutation_p.R263*	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	263						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAATTTCTCGTTTTGGGCTG	0.458													13	58					0	0	1	0	0
ARSI	340075	broad.mit.edu	37	5	149678065	149678065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:149678065G>A	uc003lrv.2	-	2	1011	c.422C>T	c.(421-423)TCC>TTC	p.S141F		NM_001012301	NP_001012301	Q5FYB1	ARSI_HUMAN	arylsulfatase family, member I precursor	141						endoplasmic reticulum|extracellular region	arylsulfatase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CATATGGGTGGAATAACCTGC	0.622													21	32					0	0	1	0	0
CD74	972	broad.mit.edu	37	5	149782767	149782767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:149782767C>T	uc003lsc.2	-	7	745	c.734G>A	c.(733-735)GGG>GAG	p.G245E	CD74_uc003lsb.2_Intron|CD74_uc003lse.2_Intron|CD74_uc003lsd.2_Intron|CD74_uc003lsf.1_Missense_Mutation_p.G245E	NM_001025159	NP_001020330	P04233	HG2A_HUMAN	CD74 antigen isoform a	245	Thyroglobulin type-1.|Extracellular (Potential).				antigen processing and presentation of endogenous antigen|cell proliferation|immunoglobulin mediated immune response|intracellular protein transport|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of peptide secretion|positive regulation of B cell proliferation|positive regulation of chemokine (C-X-C motif) ligand 2 production|positive regulation of cytokine-mediated signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|positive regulation of macrophage cytokine production|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation|prostaglandin biosynthetic process|protein complex assembly|regulation of macrophage activation	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|lysosome|receptor complex	beta-amyloid binding|cytokine receptor activity|identical protein binding|MHC class II protein binding			breast(1)	1		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GCCGATGCTCCCATAGCACTG	0.597			T	ROS1	NSCLC								10	92					0	0	1	0	0
ANXA6	309	broad.mit.edu	37	5	150489374	150489374	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:150489374A>C	uc003ltl.1	-	22	1776	c.1624T>G	c.(1624-1626)TCC>GCC	p.S542A	ANXA6_uc011dcp.1_Missense_Mutation_p.S510A|ANXA6_uc003ltm.1_Missense_Mutation_p.S536A|ANXA6_uc003ltn.1_Missense_Mutation_p.S329A|ANXA6_uc003lto.1_Missense_Mutation_p.S129A	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	542	Annexin 7.					melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTCTCCAAGGAAGTTTTGTCT	0.537													3	17					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150923520	150923520	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:150923520C>G	uc003lue.3	-	9	7181	c.7168G>C	c.(7168-7170)GAA>CAA	p.E2390Q	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2390	Extracellular (Potential).|Cadherin 21.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTTGCCAGTTCACTGACATTG	0.498													39	32					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150935938	150935938	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:150935938C>T	uc003lue.3	-	3	3613	c.3600G>A	c.(3598-3600)CTG>CTA	p.L1200L	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Silent_p.L1200L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1200	Extracellular (Potential).|Cadherin 10.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCTCTCTGTCCAGCTGCTGGG	0.488													9	67					0	0	1	0	0
NMUR2	56923	broad.mit.edu	37	5	151784013	151784013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:151784013G>A	uc003luv.2	-	1	828	c.662C>T	c.(661-663)TCC>TTC	p.S221F		NM_020167	NP_064552	Q9GZQ4	NMUR2_HUMAN	neuromedin U receptor 2	221	Helical; Name=5; (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|arachidonic acid secretion|calcium ion transport|central nervous system development|elevation of cytosolic calcium ion concentration|regulation of smooth muscle contraction	integral to membrane|plasma membrane	GTP binding|intracellular calcium activated chloride channel activity|neuromedin U receptor activity			ovary(3)|skin(2)|lung(1)|breast(1)|pancreas(1)	8		Medulloblastoma(196;0.091)|all_hematologic(541;0.103)	Kidney(363;0.000106)|KIRC - Kidney renal clear cell carcinoma(527;0.000672)			GAATAGGAAGGAGGTGACCTG	0.537													71	69					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156741360	156741360	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:156741360G>A	uc003lwq.2	+	14	1257	c.1119G>A	c.(1117-1119)ACG>ACA	p.T373T	CYFIP2_uc011ddn.1_Silent_p.T347T|CYFIP2_uc011ddo.1_Silent_p.T177T|CYFIP2_uc003lwr.2_Silent_p.T373T|CYFIP2_uc003lws.2_Silent_p.T373T|CYFIP2_uc003lwt.2_Silent_p.T251T|CYFIP2_uc011ddp.1_Silent_p.T107T	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	373					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGGTGGTGACGGGCTCAGGGC	0.423													9	72					0	0	1	0	0
CYFIP2	26999	broad.mit.edu	37	5	156816271	156816271	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:156816271C>T	uc003lwq.2	+	31	3420	c.3282C>T	c.(3280-3282)GTC>GTT	p.V1094V	CYFIP2_uc011ddn.1_Silent_p.V1068V|CYFIP2_uc011ddo.1_Silent_p.V898V|CYFIP2_uc003lwr.2_Silent_p.V1094V|CYFIP2_uc003lws.2_Silent_p.V1094V|CYFIP2_uc003lwt.2_Silent_p.V997V|CYFIP2_uc011ddp.1_Silent_p.V828V|CYFIP2_uc003lwv.2_Silent_p.V49V	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1119					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGTTCGAGGTCATCCTGACCC	0.612													13	52					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156926622	156926622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:156926622C>T	uc003lwz.2	-	13	1421	c.1357G>A	c.(1357-1359)GGG>AGG	p.G453R	ADAM19_uc003lww.1_Missense_Mutation_p.G186R|ADAM19_uc003lwy.2_Missense_Mutation_p.G52R|ADAM19_uc011ddr.1_Missense_Mutation_p.G384R	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	453	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CACTCCGCCCCCGGCCTCAGG	0.632													14	14					0	0	1	0	0
ADAM19	8728	broad.mit.edu	37	5	156957821	156957821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:156957821C>T	uc003lwz.2	-	5	465	c.401G>A	c.(400-402)GGA>GAA	p.G134E	ADAM19_uc003lww.1_5'UTR|ADAM19_uc011ddr.1_Missense_Mutation_p.G65E	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	134	Cysteine switch (By similarity).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding	p.R134Q(1)		ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTACCTAATTCCTCGGCAAGT	0.562													31	31					0	0	1	0	0
SOX30	11063	broad.mit.edu	37	5	157053673	157053673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:157053673G>A	uc003lxb.1	-	5	2279	c.1937C>T	c.(1936-1938)CCA>CTA	p.P646L	SOX30_uc003lxc.1_Nonsense_Mutation_p.Q482*|SOX30_uc011dds.1_Missense_Mutation_p.P341L	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	646	Pro-rich.				regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AAGGCATTCTGGCATTGAACT	0.398													18	21					0	0	1	0	0
SOX30	11063	broad.mit.edu	37	5	157078618	157078618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:157078618C>T	uc003lxb.1	-	1	811	c.469G>A	c.(469-471)GAA>AAA	p.E157K	SOX30_uc003lxc.1_Missense_Mutation_p.E157K|SOX30_uc011dds.1_Intron	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	157					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGACCGGTTTCGACGGCCCCT	0.677													14	19					0	0	1	0	0
GABRA1	2554	broad.mit.edu	37	5	161300165	161300165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:161300165G>A	uc010jiw.2	+	6	766	c.298G>A	c.(298-300)GAA>AAA	p.E100K	GABRA1_uc010jix.2_Missense_Mutation_p.E100K|GABRA1_uc010jiy.2_Missense_Mutation_p.E100K|GABRA1_uc003lyx.3_Missense_Mutation_p.E100K|GABRA1_uc010jiz.2_Missense_Mutation_p.E100K|GABRA1_uc010jja.2_Missense_Mutation_p.E100K|GABRA1_uc010jjb.2_Missense_Mutation_p.E100K	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	100	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	CTGGAAGGATGAAAGGTTAAA	0.358													9	104					0	0	1	0	0
ODZ2	57451	broad.mit.edu	37	5	167675102	167675102	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:167675102C>T	uc010jjd.2	+	27	7131	c.7131C>T	c.(7129-7131)ATC>ATT	p.I2377I	ODZ2_uc003lzr.3_Silent_p.I2147I|ODZ2_uc003lzt.3_Silent_p.I1750I|ODZ2_uc010jje.2_Silent_p.I1641I	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GCCTCATGATCAAACAGCTGC	0.527													21	151					0	0	1	0	0
C5orf25	375484	broad.mit.edu	37	5	175772322	175772322	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:175772322G>A	uc003mds.3	+	12	2900	c.2493G>A	c.(2491-2493)CAG>CAA	p.Q831Q	C5orf25_uc003mdt.3_Silent_p.Q416Q|C5orf25_uc003mdr.3_RNA|C5orf25_uc003mdv.2_Silent_p.Q292Q			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	831											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		GCCTGATCCAGATGCTGGGGG	0.522													33	27					0	0	1	0	0
CLTB	1212	broad.mit.edu	37	5	175843197	175843197	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:175843197C>T	uc003meh.2	-	2	343	c.168G>A	c.(166-168)CAG>CAA	p.Q56Q	CLTB_uc003mei.2_Silent_p.Q56Q|CLTB_uc011dfn.1_RNA	NM_007097	NP_009028	P09497	CLCB_HUMAN	clathrin, light polypeptide isoform b	56					intracellular protein transport|vesicle-mediated transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle	protein binding|structural molecule activity				0	all_cancers(89;0.00522)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.098)		TGGGGCCCGGCTGCGCGGGGG	0.761													6	7					0	0	1	0	0
TSPAN17	26262	broad.mit.edu	37	5	176078637	176078637	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:176078637G>A	uc003met.2	+	2	337	c.108G>A	c.(106-108)CTG>CTA	p.L36L	TSPAN17_uc003mes.3_Intron|TSPAN17_uc003meu.2_Silent_p.L36L|TSPAN17_uc003mev.2_Silent_p.L36L|TSPAN17_uc003mew.2_Silent_p.L36L	NM_012171	NP_036303	Q96FV3	TSN17_HUMAN	transmembrane 4 superfamily member 17 isoform a	36	Helical; (Potential).					integral to membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0	all_cancers(89;0.00141)|Renal(175;0.000269)|Lung NSC(126;0.00814)|all_lung(126;0.0133)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCTGTTCCTGGCTATCGGCC	0.677													8	10					0	0	1	0	0
UNC5A	90249	broad.mit.edu	37	5	176301345	176301345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:176301345G>A	uc003mey.2	+	8	1348	c.1156G>A	c.(1156-1158)GAT>AAT	p.D386N	UNC5A_uc010jkg.1_Missense_Mutation_p.D346N	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	386	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCCCCGGCAGGATGGGCCCAG	0.647													13	132					0	0	1	0	0
LMAN2	10960	broad.mit.edu	37	5	176761405	176761405	+	Splice_Site	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:176761405C>A	uc003mge.2	-	7	1028	c.791_splice	c.e7-1	p.D264_splice	LMAN2_uc003mgd.2_Splice_Site_p.D264_splice	NM_006816	NP_006807	Q12907	LMAN2_HUMAN	lectin, mannose-binding 2 precursor						protein transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	metal ion binding|sugar binding				0	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCATGATTGTCTGCAGGACCA	0.572													33	28					2.95478e-19	3.00058e-19	1	1	0
GRM6	2916	broad.mit.edu	37	5	178413331	178413331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:178413331C>T	uc003mjr.2	-	8	2103	c.1924G>A	c.(1924-1926)GTG>ATG	p.V642M	GRM6_uc003mjq.2_5'Flank|GRM6_uc010jla.1_Missense_Mutation_p.V225M|GRM6_uc003mjs.1_Missense_Mutation_p.V262M	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	642	Helical; Name=2; (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGCTCAGCCACCATGAGGAAG	0.652													17	12					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178415981	178415981	+	Missense_Mutation	SNP	C	T	T	rs5019552		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:178415981C>T	uc003mjr.2	-	6	1488	c.1309G>A	c.(1309-1311)GAT>AAT	p.D437N	GRM6_uc010jla.1_Missense_Mutation_p.D20N|GRM6_uc003mjs.1_Missense_Mutation_p.D57N	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	437	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		ATCCGCCCATCAGTGGGTTCC	0.627													29	11					0	0	1	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179297444	179297444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:179297444G>A	uc003mlh.2	-	16	2573	c.2536C>T	c.(2536-2538)CGT>TGT	p.R846C	TBC1D9B_uc003mli.2_Missense_Mutation_p.R846C|TBC1D9B_uc003mlj.2_Missense_Mutation_p.R846C|TBC1D9B_uc003mlg.2_Missense_Mutation_p.R22C|TBC1D9B_uc011dgv.1_Missense_Mutation_p.R22C|TBC1D9B_uc011dgw.1_Missense_Mutation_p.R22C|TBC1D9B_uc003mlk.1_Missense_Mutation_p.R4C	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	846						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGTCCCGACGGCCGGCCATT	0.662													17	33					0	0	1	0	0
FLT4	2324	broad.mit.edu	37	5	180057043	180057043	+	Silent	SNP	G	A	A	rs140192529		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:180057043G>A	uc003mma.3	-	5	655	c.576C>T	c.(574-576)CTC>CTT	p.L192L	FLT4_uc003mlz.3_Silent_p.L192L|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Silent_p.L192L|FLT4_uc011dgz.1_Silent_p.L192L|FLT4_uc011dha.1_Missense_Mutation_p.S176L	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	192	Ig-like C2-type 2.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	GCGTGGACACGAGCATGCCCC	0.642									Congenital_Hereditary_Lymphedema				13	86					0	0	1	0	0
BTNL8	79908	broad.mit.edu	37	5	180335653	180335653	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:180335653C>T	uc003mmp.2	+	2	351	c.117C>T	c.(115-117)TCC>TCT	p.S39S	BTNL8_uc003mmq.2_Silent_p.S39S|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Silent_p.S39S|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	39	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGCATTCTCCTGTTTCCTGT	0.557													29	27					0	0	1	0	0
BTNL9	153579	broad.mit.edu	37	5	180477329	180477329	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr5:180477329C>T	uc003mmt.2	+	4	927	c.696C>T	c.(694-696)CTC>CTT	p.L232L	BTNL9_uc011dhi.1_Silent_p.L163L	NM_152547	NP_689760	Q6UXG8	BTNL9_HUMAN	butyrophilin-like 9 precursor	232	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(89;2.45e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TCCAGAATCTCCTCTTGAGCC	0.532													63	48					0	0	1	0	0
MUTED	63915	broad.mit.edu	37	6	8064536	8064536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:8064536G>A	uc003mxy.2	-	1	112	c.74C>T	c.(73-75)TCC>TTC	p.S25F	TXNDC5_uc003mxw.2_5'UTR|MUTED_uc010joc.2_5'UTR|MUTED_uc010job.2_RNA	NM_201280	NP_958437	Q8TDH9	MUTED_HUMAN	muted	25						BLOC-1 complex	protein binding				0	Ovarian(93;0.0398)					AGTCCCCAGGGAGTCCCTCTT	0.667													27	40					0	0	1	0	0
TMEM170B	100113407	broad.mit.edu	37	6	11566004	11566004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:11566004G>A	uc010jpa.2	+	2	203	c.203G>A	c.(202-204)AGA>AAA	p.R68K		NM_001100829	NP_001094299	Q5T4T1	T170B_HUMAN	transmembrane protein 170B	68	Cytoplasmic (Potential).					integral to membrane					0						AGGCAGGGAAGAGTCATCTCT	0.458													74	140					0	0	1	0	0
CAP2	10486	broad.mit.edu	37	6	17543315	17543315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:17543315G>A	uc003ncb.2	+	11	1393	c.1150G>A	c.(1150-1152)GTG>ATG	p.V384M	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.V358M|CAP2_uc011djb.1_Missense_Mutation_p.V320M|CAP2_uc011djc.1_Missense_Mutation_p.V272M|CAP2_uc011djd.1_Missense_Mutation_p.V124M	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	384	C-CAP/cofactor C-like.				activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			ACTCGGCCTGGTGTTTGACAA	0.413													78	129					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24601303	24601303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:24601303G>A	uc011djo.1	-	2	266	c.29C>T	c.(28-30)TCA>TTA	p.S10L	KIAA0319_uc011djp.1_Intron|KIAA0319_uc003neh.1_Missense_Mutation_p.S10L|KIAA0319_uc011djq.1_5'UTR|KIAA0319_uc011djr.1_Missense_Mutation_p.S10L	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	10					negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CAGCAGCAATGAAGAGAGCAC	0.532													71	132					0	0	1	0	0
HIST1H3D	8351	broad.mit.edu	37	6	26197276	26197276	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:26197276A>T	uc003ngv.2	-	2	600	c.203T>A	c.(202-204)TTC>TAC	p.F68Y	HIST1H2BF_uc003ngx.2_5'Flank	NM_003530	NP_003521	P68431	H31_HUMAN	histone cluster 1, H3d	68					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.196)				TAGACGCTGGAATGGCAGTTT	0.632													54	83					0	0	1	0	0
ZNF184	7738	broad.mit.edu	37	6	27420986	27420986	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:27420986C>T	uc003njj.2	-	5	1163	c.352G>A	c.(352-354)GAA>AAA	p.E118K	ZNF184_uc010jqv.2_Missense_Mutation_p.E118K|ZNF184_uc003nji.2_Missense_Mutation_p.E118K	NM_007149	NP_009080	Q99676	ZN184_HUMAN	zinc finger protein 184	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AGCTCTTCTTCAGAAATGTCA	0.378													30	50					0	0	1	0	0
ZKSCAN4	387032	broad.mit.edu	37	6	28213227	28213227	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28213227A>G	uc003nks.1	-	5	1549	c.1305T>C	c.(1303-1305)AAT>AAC	p.N435N	ZKSCAN4_uc011dlb.1_Silent_p.N280N	NM_019110	NP_061983	Q969J2	ZKSC4_HUMAN	zinc finger with KRAB and SCAN domains 4	435	C2H2-type 5.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TGCCACACATATTGCACTGGT	0.488													37	76					0	0	1	0	0
ZKSCAN3	80317	broad.mit.edu	37	6	28327526	28327526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28327526C>T	uc003nle.3	+	2	379	c.163C>T	c.(163-165)CCG>TCG	p.P55S	ZKSCAN3_uc010jrc.2_Missense_Mutation_p.P55S|ZKSCAN3_uc003nlf.3_Intron	NM_024493	NP_077819	Q9BRR0	ZKSC3_HUMAN	zinc finger with KRAB and SCAN domains 3	55	SCAN box.				positive regulation of transcription, DNA-dependent|viral reproduction	nucleus	chromatin binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						CTTCCGCTACCCGGAGGCTGC	0.637													32	46					0	0	1	0	0
GPX6	257202	broad.mit.edu	37	6	28478621	28478621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28478621C>T	uc011dlj.1	-	2	198	c.148G>A	c.(148-150)GGC>AGC	p.G50S	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	50					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	TACTCCTCGCCGTTGAGGGTG	0.458													30	54					0	0	1	0	0
GPX6	257202	broad.mit.edu	37	6	28483498	28483498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28483498G>A	uc011dlj.1	-	1	73	c.23C>T	c.(22-24)TCC>TTC	p.S8F	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	8					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	GACAAGACAGGAGGCCTGGAA	0.537													23	57					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28540442	28540442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28540442C>T	uc003nlo.2	-	4	3842	c.3224G>A	c.(3223-3225)CGA>CAA	p.R1075Q		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1075					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gagttcatttcgtatttcaaa	0													34	71					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28542979	28542979	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28542979G>A	uc003nlo.2	-	3	2121	c.1503C>T	c.(1501-1503)TTC>TTT	p.F501F		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	501	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACATCTGAATGAACCACAAAA	0.433													50	106					0	0	1	0	0
Unknown	0	broad.mit.edu	37	6	28829182	28829182	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28829182C>T	uc003nlq.2	-	2		c.1005G>A								Homo sapiens cDNA FLJ30941 fis, clone FEBRA2007458.																		GTAGGAGGGCCGTAGGCAGCC	0.493													2	2					0	0	1	0	0
TRIM27	5987	broad.mit.edu	37	6	28872105	28872105	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28872105G>A	uc003nlr.2	-	8	1643	c.1284C>T	c.(1282-1284)CCC>CCT	p.P428P	TRIM27_uc003nls.2_Intron|TRIM27_uc003nlt.1_3'UTR	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	428	B30.2/SPRY.				cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						GGGTCCGCAGGGGTAGGGCAG	0.537			T	RET	papillary thyroid								47	86					0	0	1	0	0
ZNF311	282890	broad.mit.edu	37	6	28962903	28962903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:28962903G>A	uc003nlu.2	-	7	2389	c.1876C>T	c.(1876-1878)CTT>TTT	p.L626F	ZNF311_uc011dlk.1_Missense_Mutation_p.L534F|ZNF311_uc003nlv.2_Missense_Mutation_p.L534F	NM_001010877	NP_001010877	Q5JNZ3	ZN311_HUMAN	zinc finger protein 311	626	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						TGTCCAGTAAGATTTGAGCTC	0.438													17	31					0	0	1	0	0
OR2W1	26692	broad.mit.edu	37	6	29012512	29012512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:29012512C>T	uc003nlw.2	-	1	441	c.441G>A	c.(439-441)ATG>ATA	p.M147I		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TACTCCAGATCATGATAATCA	0.373													37	52					0	0	1	0	0
OR2J2	26707	broad.mit.edu	37	6	29141779	29141779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:29141779C>T	uc011dlm.1	+	1	469	c.367C>T	c.(367-369)CGT>TGT	p.R123C		NM_030905	NP_112167	O76002	OR2J2_HUMAN	olfactory receptor, family 2, subfamily J,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GTCATATGATCGTTATGTAGC	0.448													86	241					0	0	1	0	0
GABBR1	2550	broad.mit.edu	37	6	29572389	29572389	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:29572389T>C	uc003nmt.3	-	22	2930	c.2594A>G	c.(2593-2595)GAA>GGA	p.E865G	GABBR1_uc003nmp.3_Missense_Mutation_p.E748G|GABBR1_uc003nms.3_Missense_Mutation_p.E748G|GABBR1_uc003nmu.3_Missense_Mutation_p.E803G|GABBR1_uc011dlr.1_Missense_Mutation_p.E688G	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	865	Cytoplasmic (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	CGACTGCCATTCCCCTCGGGT	0.587													38	58					0	0	1	0	0
ZFP57	346171	broad.mit.edu	37	6	29640421	29640421	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:29640421G>A	uc011dlw.1	-	4	1618	c.1467C>T	c.(1465-1467)GTC>GTT	p.V489V	ZFP57_uc003nnl.3_Silent_p.V469V	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	405					DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						CCATAGTGGGGACATCATGAG	0.567													23	44					0	0	1	0	0
ZFP57	346171	broad.mit.edu	37	6	29641336	29641336	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:29641336G>A	uc011dlw.1	-	4	703	c.552C>T	c.(550-552)TTC>TTT	p.F184F	ZFP57_uc003nnl.3_Silent_p.F164F	NM_001109809	NP_001103279	Q9NU63	ZFP57_HUMAN	zinc finger protein 57 homolog	100	C2H2-type 1.				DNA methylation involved in embryo development|regulation of gene expression by genetic imprinting|transcription, DNA-dependent		DNA binding|zinc ion binding			ovary(3)|skin(2)	5						AGCGCCTGCTGAAACATTTGC	0.562													35	59					0	0	1	0	0
TRIM10	10107	broad.mit.edu	37	6	30128563	30128563	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:30128563C>T	uc003npo.3	-	1	149	c.73G>A	c.(73-75)GAG>AAG	p.E25K	TRIM10_uc003npn.2_Missense_Mutation_p.E25K|TRIM15_uc010jrx.2_5'Flank	NM_006778	NP_006769	Q9UDY6	TRI10_HUMAN	tripartite motif-containing 10 isoform 1	25	RING-type.					cytoplasm	zinc ion binding				0						GTGACCGGCTCCCTCAGGGTA	0.612													23	47					0	0	1	0	0
TRIM15	89870	broad.mit.edu	37	6	30136175	30136175	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:30136175G>A	uc010jrx.2	+	3	1055	c.576G>A	c.(574-576)AGG>AGA	p.R192R		NM_033229	NP_150232	Q9C019	TRI15_HUMAN	tripartite motif protein 15	192	Potential.				mesodermal cell fate determination	intracellular	zinc ion binding				0						CCAGGCTGAGGGAGCTGGAGC	0.552													16	34					0	0	1	0	0
MDC1	9656	broad.mit.edu	37	6	30681796	30681796	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:30681796G>A	uc003nrg.3	-	3	741	c.301C>T	c.(301-303)CTG>TTG	p.L101L	MDC1_uc003nrf.3_5'Flank|MDC1_uc011dmp.1_Intron|MDC1_uc003nrh.1_Intron|MDC1_uc003nri.2_Silent_p.L101L	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	101	Interaction with the MRN complex.|FHA.|Interaction with CHEK2.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						GGAGGTCTCAGGATTTGAGTA	0.502								Other_conserved_DNA_damage_response_genes					31	65					0	0	1	0	0
SFTA2	389376	broad.mit.edu	37	6	30899508	30899508	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:30899508G>A	uc003nsf.2	-	2	205	c.126C>T	c.(124-126)TCC>TCT	p.S42S		NM_205854	NP_995326	Q6UW10	SFTA2_HUMAN	surfactant associated protein G precursor	42						extracellular region					0						CCAGGAAGCTGGACTCATAGG	0.502													37	68					0	0	1	0	0
CDSN	1041	broad.mit.edu	37	6	31084978	31084978	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:31084978G>A	uc003nsm.1	-	2	441	c.414C>T	c.(412-414)AGC>AGT	p.S138S	PSORS1C1_uc003nsl.1_Intron|PSORS1C1_uc010jsj.1_Intron	NM_001264	NP_001255	Q15517	CDSN_HUMAN	corneodesmosin precursor	138	Ser-rich.				cell-cell adhesion|keratinocyte differentiation|skin morphogenesis	cornified envelope|desmosome|extracellular region	protein homodimerization activity			ovary(1)|pancreas(1)	2						CCGAGTGAGAGCTGCTGCTCC	0.577													15	26					0	0	1	0	0
MICB	4277	broad.mit.edu	37	6	31473608	31473608	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:31473608C>T	uc003ntn.3	+	2	401	c.285C>T	c.(283-285)GAC>GAT	p.D95D	MICB_uc011dnm.1_Silent_p.D63D|MICB_uc003nto.3_Silent_p.D95D	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	95	Extracellular (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						ATGGGCAAGACCTCAGGAGGA	0.557													7	11					0	0	1	0	0
BAT2	7916	broad.mit.edu	37	6	31599107	31599107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:31599107C>T	uc003nvb.3	+	16	2906	c.2657C>T	c.(2656-2658)CCT>CTT	p.P886L	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P886L	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	886	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						AAGGAGCCCCCTAAGGAGGAG	0.662													22	35					0	0	1	0	0
C2	717	broad.mit.edu	37	6	31912779	31912779	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:31912779C>T	uc003nyf.2	+	17	2316	c.2052C>T	c.(2050-2052)TTC>TTT	p.F684F	C2_uc011doo.1_Silent_p.F438F|C2_uc011dop.1_Silent_p.F470F|C2_uc010jtk.2_Silent_p.F552F|C2_uc011doq.1_Silent_p.F655F|C2_uc003nyg.2_Silent_p.F461F|CFB_uc011dor.1_Intron|C2_uc003nyh.1_Intron|CFB_uc011dos.1_5'Flank|CFB_uc003nyi.2_5'Flank|CFB_uc003nyj.3_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	684	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		GAGCAGTTTTCCTTGAGCGGA	0.552													91	136					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32023795	32023795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:32023795G>A	uc003nzl.2	-	24	8502	c.8300C>T	c.(8299-8301)ACC>ATC	p.T2767I		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	2825	Fibronectin type-III 20.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GTACTGCACGGTGAAGGAGTC	0.677													27	76					0	0	1	0	0
ATF6B	1388	broad.mit.edu	37	6	32089068	32089068	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:32089068G>A	uc003nzn.2	-	6	569	c.536C>T	c.(535-537)TCC>TTC	p.S179F	ATF6B_uc003nzo.2_Missense_Mutation_p.S176F|ATF6B_uc003nzp.1_5'Flank|ATF6B_uc011dpg.1_Missense_Mutation_p.S113F|ATF6B_uc011dph.1_Missense_Mutation_p.S179F	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	179	Cytoplasmic (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGAGAGCAGGGAGGCCTCAGA	0.527													14	25					0	0	1	0	0
PPT2	9374	broad.mit.edu	37	6	32122887	32122887	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:32122887A>G	uc003nzx.2	+	3	832	c.264A>G	c.(262-264)CAA>CAG	p.Q88Q	PRRT1_uc003nzu.2_5'Flank|uc003nzv.3_5'Flank|PPT2_uc003nzw.2_Silent_p.Q94Q|PPT2_uc011dpi.1_Intron|PPT2_uc003nzy.1_RNA|PPT2_uc003nzz.2_Silent_p.Q88Q|PPT2_uc003oaa.2_Silent_p.Q88Q|PPT2_uc010jtu.1_Silent_p.Q88Q	NM_005155	NP_005146	Q9UMR5	PPT2_HUMAN	palmitoyl-protein thioesterase 2 isoform a	88					protein modification process	lysosome	palmitoyl-(protein) hydrolase activity				0						AACAGGTGCAAGGGTTCCGAG	0.617													23	66					0	0	1	0	0
HLA-DRB1	3123	broad.mit.edu	37	6	32548563	32548563	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:32548563G>A	uc003obp.3	-	4	766	c.723C>T	c.(721-723)TTC>TTT	p.F241F	HLA-DRB1_uc011dqa.1_Silent_p.F71F|HLA-DRB5_uc003obk.3_Intron|HLA-DRB6_uc003obo.1_Intron|uc010jub.1_5'Flank|HLA-DRB1_uc011dqb.1_Intron|HLA-DRB1_uc011dqc.1_Silent_p.F71F	NM_002124	NP_002115	P01911	2B1F_HUMAN	major histocompatibility complex, class II, DR	241	Helical; (Potential).				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|MHC class II protein complex				skin(1)	1						CGGCCCCAAGGAAGAGCAGGC	0.547									Rheumatoid_Arthritis|Sj_gren_syndrome	Multiple Myeloma(14;0.17)			30	187					0	0	1	0	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713049	32713049	+	Missense_Mutation	SNP	G	A	A	rs147801222	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:32713049G>A	uc003obx.2	+	2	254	c.196G>A	c.(196-198)GAG>AAG	p.E66K		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	66	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGAGACGAAAGAGACTGTCTG	0.468													48	89					0	0	1	0	0
BRD2	6046	broad.mit.edu	37	6	32942256	32942256	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:32942256A>T	uc003ocn.3	+	3	1748	c.47A>T	c.(46-48)AAT>ATT	p.N16I	BRD2_uc003oco.2_RNA|BRD2_uc003ocq.3_Missense_Mutation_p.N16I|BRD2_uc003ocp.3_5'UTR|BRD2_uc010juh.2_Missense_Mutation_p.N16I	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	16					spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						GGGGAAGGGAATGCAGGGTTG	0.512													52	118					0	0	1	0	0
ANKS1A	23294	broad.mit.edu	37	6	35053670	35053670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:35053670C>T	uc003ojx.3	+	22	3402	c.3260C>T	c.(3259-3261)TCC>TTC	p.S1087F	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_Missense_Mutation_p.S628F|ANKS1A_uc010jvp.1_Missense_Mutation_p.S461F	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	1087	PID.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						ACAAAATCTTCCAAACCGGTG	0.627													20	26					0	0	1	0	0
TCP11	6954	broad.mit.edu	37	6	35108537	35108537	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:35108537C>T	uc003okd.2	-	2	331	c.150G>A	c.(148-150)GAG>GAA	p.E50E	TCP11_uc003ojz.1_Intron|TCP11_uc003oka.2_5'UTR|TCP11_uc003okb.2_5'UTR|TCP11_uc003okc.2_5'UTR|TCP11_uc011dsu.1_Silent_p.E37E|TCP11_uc011dsv.1_Intron|TCP11_uc011dsw.1_Intron	NM_001093728	NP_001087197	Q8WWU5	TCP11_HUMAN	t-complex 11 isoform 1	37					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				ovary(3)|skin(2)	5						GAGGGGGGTCCTCGGAGCCGC	0.652													15	24					0	0	1	0	0
SCUBE3	222663	broad.mit.edu	37	6	35210859	35210859	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:35210859G>A	uc003okf.1	+	15	1761	c.1755G>A	c.(1753-1755)AAG>AAA	p.K585K	SCUBE3_uc003okg.1_Silent_p.K584K|SCUBE3_uc003okh.1_Silent_p.K472K	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	585					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						GATCCCTGAAGATGCTCAGAA	0.622													34	69					0	0	1	0	0
SCUBE3	222663	broad.mit.edu	37	6	35210863	35210863	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:35210863C>G	uc003okf.1	+	15	1765	c.1759C>G	c.(1759-1761)CTC>GTC	p.L587V	SCUBE3_uc003okg.1_Missense_Mutation_p.L586V|SCUBE3_uc003okh.1_Missense_Mutation_p.L474V	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	587					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CCTGAAGATGCTCAGAAAGTC	0.627													33	71					0	0	1	0	0
SLC26A8	116369	broad.mit.edu	37	6	35987468	35987468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:35987468C>T	uc003olm.2	-	2	128	c.17G>A	c.(16-18)AGG>AAG	p.R6K	SLC26A8_uc003oln.2_Missense_Mutation_p.R6K|SLC26A8_uc003oll.2_Missense_Mutation_p.R6K	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	6	Cytoplasmic (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						GATGGCGCTCCTCTCTAGTTG	0.423													11	25					0	0	1	0	0
PNPLA1	285848	broad.mit.edu	37	6	36269779	36269779	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:36269779G>A	uc010jwf.2	+	6	917	c.917G>A	c.(916-918)GGA>GAA	p.G306E	PNPLA1_uc003olw.1_Missense_Mutation_p.G211E|PNPLA1_uc010jwe.1_Missense_Mutation_p.G220E	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	306					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						AGTCTGGAAGGAGCCACACAA	0.587											OREG0017382	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	56					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38831715	38831715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:38831715C>T	uc003ooe.1	+	43	6326	c.5726C>T	c.(5725-5727)TCA>TTA	p.S1909L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CCTGTATTATCAGTGGCAGCA	0.343													40	73					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38919173	38919173	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:38919173G>C	uc003ooe.1	+	80	12277	c.11677G>C	c.(11677-11679)GTT>CTT	p.V3893L	DNAH8_uc003oog.1_Missense_Mutation_p.V342L|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CACAGAACCAGTTATCTTAAA	0.418													85	173					0	0	1	0	0
UBR2	23304	broad.mit.edu	37	6	42615888	42615888	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:42615888C>T	uc011dur.1	+	22	2442	c.2442C>T	c.(2440-2442)ATC>ATT	p.I814I	UBR2_uc011dus.1_Silent_p.I459I|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	814					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			AGAGTGTAATCGAAGCAGTTG	0.348													40	79					0	0	1	0	0
CUL9	23113	broad.mit.edu	37	6	43163840	43163840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:43163840G>A	uc003ouk.2	+	10	2497	c.2422G>A	c.(2422-2424)GAG>AAG	p.E808K	CUL9_uc003oul.2_Missense_Mutation_p.E808K|CUL9_uc010jyk.2_5'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	808					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						CAGCTCCTCGGAGATCCCCAC	0.557													57	135					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43226872	43226872	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:43226872C>T	uc003ouq.1	+	11	1392	c.1113C>T	c.(1111-1113)CCC>CCT	p.P371P		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	371						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			AGAATGCACCCCCAATTCTGC	0.657													28	94					0	0	1	0	0
TTBK1	84630	broad.mit.edu	37	6	43251392	43251392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:43251392G>A	uc003ouq.1	+	14	3193	c.2914G>A	c.(2914-2916)GAG>AAG	p.E972K		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	972						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GGGCGCTGTGGAGGAGGGGGC	0.682													17	39					0	0	1	0	0
TCTE1	202500	broad.mit.edu	37	6	44253737	44253737	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:44253737G>A	uc003oxi.2	-	3	966	c.810C>T	c.(808-810)TCC>TCT	p.S270S	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	270										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CGGCTGCCAAGGAGAGGCAGT	0.582													30	57					0	0	1	0	0
ENPP4	22875	broad.mit.edu	37	6	46108835	46108835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:46108835G>A	uc003oxy.2	+	3	1132	c.873G>A	c.(871-873)ATG>ATA	p.M291I		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	291	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						GCCCTCATATGAATGTTTATC	0.328													16	29					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46826630	46826630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:46826630G>A	uc003oyo.3	-	17	3299	c.3010C>T	c.(3010-3012)CCT>TCT	p.P1004S	GPR116_uc011dwj.1_Missense_Mutation_p.P559S|GPR116_uc011dwk.1_Missense_Mutation_p.P433S|GPR116_uc003oyp.3_Missense_Mutation_p.P862S|GPR116_uc003oyq.3_Missense_Mutation_p.P1004S|GPR116_uc010jzi.1_Missense_Mutation_p.P676S	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	1004	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AGAGAACTAGGATCTGGGGAG	0.488													33	66					0	0	1	0	0
GPR116	221395	broad.mit.edu	37	6	46832788	46832788	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:46832788G>A	uc003oyo.3	-	14	2270	c.1981C>T	c.(1981-1983)CTG>TTG	p.L661L	GPR116_uc011dwj.1_Silent_p.L216L|GPR116_uc011dwk.1_Silent_p.L90L|GPR116_uc003oyp.3_Silent_p.L519L|GPR116_uc003oyq.3_Silent_p.L661L|GPR116_uc010jzi.1_Silent_p.L333L	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	661	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			CCAGGAACCAGATTCAGCTTC	0.348													39	64					0	0	1	0	0
GPR115	221393	broad.mit.edu	37	6	47681690	47681690	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:47681690G>T	uc003oza.1	+	6	967	c.709G>T	c.(709-711)GAA>TAA	p.E237*	GPR115_uc003oyz.1_Nonsense_Mutation_p.E294*|GPR115_uc003ozb.1_Nonsense_Mutation_p.E235*	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	237	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						CATTGTGAATGAACTCTTCAT	0.383													36	66					9.84934e-19	9.99513e-19	1	1	0
CENPQ	55166	broad.mit.edu	37	6	49456141	49456141	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:49456141T>C	uc003ozh.1	+	7	643	c.554T>C	c.(553-555)ATT>ACT	p.I185T		NM_018132	NP_060602	Q7L2Z9	CENPQ_HUMAN	centromere protein Q	185	Potential.				CenH3-containing nucleosome assembly at centromere|mitotic prometaphase	chromosome, centromeric region|cytosol|nucleoplasm				ovary(2)	2	Lung NSC(77;0.0128)					AAAATTCAGATTCTGGCAAGT	0.313													20	63					0	0	1	0	0
ELOVL5	60481	broad.mit.edu	37	6	53160487	53160487	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:53160487A>T	uc003pbq.1	-	2	459	c.11T>A	c.(10-12)TTT>TAT	p.F4Y	ELOVL5_uc003pbr.1_Missense_Mutation_p.F4Y|ELOVL5_uc011dwx.1_Missense_Mutation_p.F4Y|ELOVL5_uc003pbs.1_Missense_Mutation_p.F4Y|ELOVL5_uc003pbu.2_Missense_Mutation_p.F4Y|ELOVL5_uc011dwy.1_RNA	NM_021814	NP_068586	Q9NYP7	ELOV5_HUMAN	elongation of very long chain fatty acids-like	4					fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, polyunsaturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0	Lung NSC(77;0.116)					TGATGCATCAAAATGTTCCAT	0.328													14	16					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54804730	54804730	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:54804730A>T	uc003pck.2	+	5	1077	c.961A>T	c.(961-963)AAC>TAC	p.N321Y		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	321										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CAGCCAGAGAAACCTTTTTGG	0.383													28	58					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54805003	54805003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:54805003C>T	uc003pck.2	+	5	1350	c.1234C>T	c.(1234-1236)CCA>TCA	p.P412S		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	412										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AACCAATAATCCACCTGGTAA	0.458													24	72					0	0	1	0	0
DST	667	broad.mit.edu	37	6	56324981	56324981	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:56324981C>T	uc003pdf.2	-	96	16741	c.16713G>A	c.(16711-16713)GAG>GAA	p.E5571E	DST_uc003pcz.3_Silent_p.E5393E|DST_uc011dxj.1_Silent_p.E5422E|DST_uc011dxk.1_Silent_p.E5433E|DST_uc003pcy.3_Silent_p.E5067E|DST_uc003pcv.3_Silent_p.E189E|DST_uc003pcw.3_Silent_p.E150E|DST_uc003pcx.3_Silent_p.E113E	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	7466					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			AGCCACTGTCCTCCCCAGAGT	0.468													18	26					0	0	1	0	0
KHDRBS2	202559	broad.mit.edu	37	6	62611179	62611179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:62611179C>T	uc003peg.2	-	5	828	c.581G>A	c.(580-582)GGG>GAG	p.G194E		NM_152688	NP_689901	Q5VWX1	KHDR2_HUMAN	KH domain-containing, RNA-binding, signal	194					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	SH3 domain binding			skin(7)|ovary(3)|liver(1)	11				BRCA - Breast invasive adenocarcinoma(397;0.149)		TATTCTGATCCCTCTGCCTCT	0.413													47	79					0	0	1	0	0
LGSN	51557	broad.mit.edu	37	6	63990302	63990302	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:63990302C>T	uc003peh.2	-	4	1188	c.1154G>A	c.(1153-1155)GGA>GAA	p.G385E	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	385					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	GTCATTGTATCCCCATGTTGT	0.463													55	113					0	0	1	0	0
MCART3P	442229	broad.mit.edu	37	6	66499141	66499141	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:66499141C>T	uc011dxw.1	+	1		c.1370C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						ACCATCAGTCCCTTATCTCTT	0.358													5	23					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69653886	69653886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:69653886G>A	uc003pev.3	+	6	1643	c.1195G>A	c.(1195-1197)GTT>ATT	p.V399I	BAI3_uc010kak.2_Missense_Mutation_p.V399I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	399	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCTTTGCCCAGGTGAGCCTAT	0.403													19	74					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	69703688	69703688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:69703688G>A	uc003pev.3	+	11	2211	c.1763G>A	c.(1762-1764)CGA>CAA	p.R588Q	BAI3_uc010kak.2_Missense_Mutation_p.R588Q	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	588	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AAGGGGCAGCGAATGCTGGCA	0.418													115	240					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	70991093	70991093	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:70991093G>C	uc003pfg.3	-	8	1035	c.876C>G	c.(874-876)GAC>GAG	p.D292E	COL9A1_uc003pfe.3_5'Flank|COL9A1_uc003pff.3_Missense_Mutation_p.D49E	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	292	Triple-helical region (COL3).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AGAAACTTACGTCGATGCCAT	0.562													9	29					0	0	1	0	0
COL9A1	1297	broad.mit.edu	37	6	71004056	71004056	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:71004056C>T	uc003pfg.3	-	5	669	c.510G>A	c.(508-510)TCG>TCA	p.S170S		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	170	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						AGGACAAATTCGAAAAGGCTG	0.428													59	116					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73787510	73787510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:73787510G>A	uc003pgk.2	+	5	1165	c.818G>A	c.(817-819)GGA>GAA	p.G273E	KCNQ5_uc003pgj.3_Missense_Mutation_p.G273E|KCNQ5_uc011dyh.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyi.1_Missense_Mutation_p.G273E|KCNQ5_uc010kat.2_Missense_Mutation_p.G273E|KCNQ5_uc011dyj.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyk.1_Missense_Mutation_p.G32E	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	273	Helical; Name=Segment S5; (Potential).				protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGGTACATAGGATTTTTGGTT	0.348													10	31					0	0	1	0	0
KHDC1	80759	broad.mit.edu	37	6	73951317	73951317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:73951317G>A	uc003pgo.2	-	5	1150	c.649C>T	c.(649-651)CCT>TCT	p.P217S	KHDC1_uc011dyl.1_Intron|KHDC1_uc003pgn.3_Missense_Mutation_p.P144S	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	217						integral to membrane	RNA binding			skin(1)	1						GAAGGCTGAGGAACGCTAAGA	0.507													40	93					0	0	1	0	0
SLC17A5	26503	broad.mit.edu	37	6	74304817	74304817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:74304817G>A	uc003phn.3	-	11	1599	c.1471C>T	c.(1471-1473)CAT>TAT	p.H491Y	SLC17A5_uc010kax.2_Missense_Mutation_p.H150Y|SLC17A5_uc010kay.2_RNA	NM_012434	NP_036566	Q9NRA2	S17A5_HUMAN	sialin	491					anion transport	integral to plasma membrane|lysosomal membrane|membrane fraction	sialic acid:hydrogen symporter activity			skin(5)|central_nervous_system(1)	6						CTGTGTCCATGGTGATCATTG	0.368													40	93					0	0	1	0	0
SENP6	26054	broad.mit.edu	37	6	76369081	76369081	+	Silent	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:76369081T>A	uc003pid.3	+	8	1273	c.654T>A	c.(652-654)CCT>CCA	p.P218P	SENP6_uc003pie.3_Silent_p.P211P|SENP6_uc003pic.2_Silent_p.P211P|SENP6_uc003pif.1_Silent_p.P109P	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	218					proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				AGCCTACTCCTCCTCTATCTC	0.348													14	35					0	0	1	0	0
PRSS35	167681	broad.mit.edu	37	6	84234148	84234148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:84234148G>A	uc003pjz.2	+	2	1151	c.988G>A	c.(988-990)GAA>AAA	p.E330K	PRSS35_uc010kbm.2_Missense_Mutation_p.E330K	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	330	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		TGTGTCCGACGAATCCAATGA	0.478													37	93					0	0	1	0	0
SNAP91	9892	broad.mit.edu	37	6	84311112	84311112	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:84311112G>A	uc011dze.1	-	15	1519	c.1202C>T	c.(1201-1203)TCA>TTA	p.S401L	SNAP91_uc011dzd.1_5'UTR|SNAP91_uc003pkb.2_Missense_Mutation_p.S364L|SNAP91_uc003pkc.2_Missense_Mutation_p.S399L|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.S399L	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	401	Ala-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		AAATGGATCTGAAATCTGTGC	0.453													7	28					0	0	1	0	0
ZNF292	23036	broad.mit.edu	37	6	87966182	87966182	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:87966182G>C	uc003plm.3	+	8	2876	c.2835G>C	c.(2833-2835)CAG>CAC	p.Q945H		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	945					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		CTCTCAATCAGGGGATTGAGG	0.433													40	50					0	0	1	0	0
RNGTT	8732	broad.mit.edu	37	6	89559543	89559543	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:89559543C>T	uc003pmr.2	-	10	1255	c.1035G>A	c.(1033-1035)GAG>GAA	p.E345E	RNGTT_uc003pms.2_Silent_p.E345E|RNGTT_uc011dzu.1_Silent_p.E285E|RNGTT_uc003pmt.2_Silent_p.E345E	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase	345	GTase.			E->A: Loss of GTase activity.	interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		CAATAATCATCTCCTTGAAAG	0.194													31	38					0	0	1	0	0
PNRC1	10957	broad.mit.edu	37	6	89790798	89790798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:89790798G>A	uc003pmv.2	+	1	370	c.185G>A	c.(184-186)GGG>GAG	p.G62E	PNRC1_uc003pmu.2_Missense_Mutation_p.G62E|PNRC1_uc003pmx.2_5'Flank	NM_006813	NP_006804	Q12796	PNRC1_HUMAN	proline-rich nuclear receptor coactivator 1	62					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0		all_cancers(76;3.64e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.102)		CATTTCCTAGGGGGAGATGGC	0.711										Multiple Myeloma(7;0.094)			12	45					0	0	1	0	0
MAP3K7	6885	broad.mit.edu	37	6	91226367	91226367	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:91226367T>C	uc003pnz.1	-	17	1836	c.1674A>G	c.(1672-1674)GAA>GAG	p.E558E	MAP3K7_uc003pny.1_Silent_p.E95E|MAP3K7_uc003poa.1_3'UTR|MAP3K7_uc003pob.1_Silent_p.E531E|MAP3K7_uc003poc.1_3'UTR	NM_145331	NP_663304	O43318	M3K7_HUMAN	mitogen-activated protein kinase kinase kinase 7	558					activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|histone H3 acetylation|I-kappaB phosphorylation|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transforming growth factor beta receptor signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytosol|endosome membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding|protein binding			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)	6		all_cancers(76;6.4e-08)|Acute lymphoblastic leukemia(125;1.43e-09)|Prostate(29;9.32e-09)|all_hematologic(105;3.69e-06)|all_epithelial(107;0.000187)|Ovarian(999;0.0164)		OV - Ovarian serous cystadenocarcinoma(136;2.05e-11)|all cancers(137;3.25e-11)|GBM - Glioblastoma multiforme(226;0.0416)|BRCA - Breast invasive adenocarcinoma(108;0.0429)		GCTGGTCCTTTTCATCCTGGT	0.368													25	56					0	0	1	0	0
EPHA7	2045	broad.mit.edu	37	6	94066598	94066598	+	Silent	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:94066598T>A	uc003poe.2	-	5	1402	c.1161A>T	c.(1159-1161)GGA>GGT	p.G387G	EPHA7_uc003pof.2_Silent_p.G387G|EPHA7_uc011eac.1_Silent_p.G387G	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	387	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GGGGCATGTATCCAATGTTAC	0.473													20	30					0	0	1	0	0
FHL5	9457	broad.mit.edu	37	6	97058526	97058526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:97058526G>A	uc003pos.1	+	6	988	c.583G>A	c.(583-585)GAT>AAT	p.D195N	FHL5_uc003pot.1_Missense_Mutation_p.D195N	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	195	LIM zinc-binding 3.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		CTGTAGGAAAGATCTCTGTGA	0.448													55	146					0	0	1	0	0
KLHL32	114792	broad.mit.edu	37	6	97424050	97424050	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:97424050C>T	uc010kcm.1	+	3	673	c.201C>T	c.(199-201)TTC>TTT	p.F67F	KLHL32_uc003poy.2_Silent_p.F67F|KLHL32_uc011ead.1_Silent_p.F67F|KLHL32_uc003poz.2_5'UTR|KLHL32_uc011eae.1_Silent_p.F67F	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	67	BTB.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		GTGACTATTTCCGGGTAAGTC	0.453													35	74					0	0	1	0	0
PRDM13	59336	broad.mit.edu	37	6	100056660	100056660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:100056660C>T	uc003pqg.1	+	2	449	c.188C>T	c.(187-189)TCC>TTC	p.S63F		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	63	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		TCGGGGGGCTCCCCTCTGGAG	0.612													24	45					0	0	1	0	0
MCHR2	84539	broad.mit.edu	37	6	100368900	100368900	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:100368900G>A	uc003pqh.1	-	6	1254	c.939C>T	c.(937-939)TTC>TTT	p.F313F	MCHR2_uc003pqi.1_Silent_p.F313F	NM_001040179	NP_001035269	Q969V1	MCHR2_HUMAN	melanin-concentrating hormone receptor 2	313	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	8		all_cancers(76;4.87e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0309)|Colorectal(196;0.069)		BRCA - Breast invasive adenocarcinoma(108;0.0429)		GACGTTTCTGGAAATTTCCAC	0.438													34	87					0	0	1	0	0
SIM1	6492	broad.mit.edu	37	6	100896428	100896428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:100896428C>T	uc003pqj.3	-	6	877	c.670G>A	c.(670-672)GAG>AAG	p.E224K	SIM1_uc010kcu.2_Missense_Mutation_p.E224K	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	224	PAS 2.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		AGCTTGATCTCCGTGACGGCG	0.617													25	41					0	0	1	0	0
PRDM1	639	broad.mit.edu	37	6	106552989	106552989	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:106552989C>T	uc003prd.2	+	5	1188	c.954C>T	c.(952-954)ATC>ATT	p.I318I	PRDM1_uc003pre.2_Silent_p.I184I	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	318					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		CCTACGGGATCGAGAGACCCA	0.607			D|N|Mis|F|S		DLBCL								44	93					0	0	1	0	0
AIM1	202	broad.mit.edu	37	6	106968399	106968399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:106968399G>A	uc003prh.2	+	2	2579	c.2092G>A	c.(2092-2094)GAA>AAA	p.E698K		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	698							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		TTCTGATATGGAAAAATTCAC	0.423													22	53					0	0	1	0	0
DDO	8528	broad.mit.edu	37	6	110734506	110734506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:110734506G>A	uc003puc.2	-	2	248	c.244C>T	c.(244-246)CAC>TAC	p.H82Y	C6orf186_uc003pub.2_5'Flank|DDO_uc003pud.2_Missense_Mutation_p.H82Y	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	54					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		GGATAAGTGTGAGGAATAAGC	0.443													45	79					0	0	1	0	0
HS3ST5	222537	broad.mit.edu	37	6	114379218	114379218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:114379218G>A	uc003pwg.3	-	2	276	c.244C>T	c.(244-246)CGC>TGC	p.R82C	uc003pwf.2_Intron|HS3ST5_uc003pwh.3_Missense_Mutation_p.R82C	NM_153612	NP_705840	Q8IZT8	HS3S5_HUMAN	heparan sulfate (glucosamine)	82	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process, enzymatic modification|negative regulation of coagulation|protein sulfation|regulation of virion penetration into host cell	Golgi membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity|protein binding			ovary(1)|pancreas(1)	2		all_cancers(87;0.0587)|Colorectal(196;0.0676)|all_epithelial(87;0.154)		OV - Ovarian serous cystadenocarcinoma(136;0.00937)|all cancers(137;0.0117)|Epithelial(106;0.0274)|GBM - Glioblastoma multiforme(226;0.143)		TCATGGAGGCGAACCTGCTCC	0.597													24	51					0	0	1	0	0
FAM26F	441168	broad.mit.edu	37	6	116784770	116784770	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:116784770G>A	uc003pwv.2	+	3	945	c.850G>A	c.(850-852)GAG>AAG	p.E284K		NM_001010919	NP_001010919	Q5R3K3	FA26F_HUMAN	hypothetical protein LOC441168	284						integral to membrane					0				GBM - Glioblastoma multiforme(226;0.0402)|all cancers(137;0.0627)|OV - Ovarian serous cystadenocarcinoma(136;0.0655)|Epithelial(106;0.231)		CAACAGAAAAGAGAAGACTCA	0.423													71	136					0	0	1	0	0
FAM26E	254228	broad.mit.edu	37	6	116836870	116836870	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:116836870G>C	uc003pwy.2	+	2	700	c.648G>C	c.(646-648)AAG>AAC	p.K216N	BET3L_uc011ebh.1_Intron	NM_153711	NP_714922	Q8N5C1	FA26E_HUMAN	hypothetical protein LOC254228	216						integral to membrane					0		all_cancers(87;0.0608)|all_epithelial(87;0.05)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0242)|all cancers(137;0.0419)|OV - Ovarian serous cystadenocarcinoma(136;0.0671)|Epithelial(106;0.212)		GTTTTTGGAAGACATATGCAC	0.428													47	86					0	0	1	0	0
GPRC6A	222545	broad.mit.edu	37	6	117113576	117113576	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:117113576A>T	uc003pxj.1	-	6	2532	c.2510T>A	c.(2509-2511)ATT>AAT	p.I837N	GPRC6A_uc003pxk.1_Missense_Mutation_p.I662N|GPRC6A_uc003pxl.1_Missense_Mutation_p.I766N	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	837	Cytoplasmic (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CTTACAAATAATAACATAGCA	0.378													50	75					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117678055	117678055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:117678055G>A	uc003pxp.1	-	25	4077	c.3878C>T	c.(3877-3879)TCC>TTC	p.S1293F	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1293	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GCCAAAATTGGAAACTTCTGT	0.373			T	GOPC|ROS1	glioblastoma|NSCLC								18	41					0	0	1	0	0
ROS1	6098	broad.mit.edu	37	6	117679003	117679003	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:117679003G>T	uc003pxp.1	-	24	4017	c.3818C>A	c.(3817-3819)TCA>TAA	p.S1273*	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1273	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		AATTATTGTTGAATTCCTATT	0.284			T	GOPC|ROS1	glioblastoma|NSCLC								22	24					7.87624e-14	7.95449e-14	1	1	0
ROS1	6098	broad.mit.edu	37	6	117746795	117746795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:117746795G>A	uc003pxp.1	-	1	224	c.25C>T	c.(25-27)CCG>TCG	p.P9S	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	9					transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ACAAGCTTCGGAATAAGACAG	0.383			T	GOPC|ROS1	glioblastoma|NSCLC								45	87					0	0	1	0	0
FAM184A	79632	broad.mit.edu	37	6	119338110	119338110	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:119338110C>T	uc003pyj.2	-	5	1681	c.1333_splice	c.e5-1	p.K445_splice	FAM184A_uc003pyk.3_Splice_Site_p.K325_splice|FAM184A_uc003pyl.3_Splice_Site_p.K325_splice	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1											ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						CATTTACTTTCTAAAATTAAA	0.323													9	21					0	0	1	0	0
MAN1A1	4121	broad.mit.edu	37	6	119623203	119623203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:119623203C>T	uc003pym.1	-	4	1208	c.766G>A	c.(766-768)GAA>AAA	p.E256K	MAN1A1_uc010kei.1_Missense_Mutation_p.E279K	NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	256	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		TCTTCAAATTCATGTTTCATT	0.274													12	15					0	0	1	0	0
CLVS2	134829	broad.mit.edu	37	6	123369783	123369783	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:123369783G>A	uc003pzi.1	+	4	1450	c.581G>A	c.(580-582)CGA>CAA	p.R194Q		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	194	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TTCCCAGCGCGATTTGGAGGA	0.388													41	99					0	0	1	0	0
THEMIS	387357	broad.mit.edu	37	6	128150849	128150849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:128150849G>A	uc003qbi.2	-	4	800	c.481C>T	c.(481-483)CAC>TAC	p.H161Y	THEMIS_uc010kfa.2_Missense_Mutation_p.H64Y|THEMIS_uc011ebt.1_Missense_Mutation_p.H161Y|THEMIS_uc010kfb.2_Missense_Mutation_p.H126Y	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	161	CABIT 1.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TTAAATGAGTGAGTTTGATGA	0.388													46	84					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128291379	128291379	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:128291379G>A	uc003qbk.2	-	30	4680	c.4313C>T	c.(4312-4314)TCA>TTA	p.S1438L	PTPRK_uc003qbj.2_Missense_Mutation_p.S1439L|PTPRK_uc010kfc.2_Missense_Mutation_p.S1445L|PTPRK_uc011ebu.1_Missense_Mutation_p.S1461L	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1438	Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CAACTAAGATGATTCCAGGTA	0.398													25	58					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128400001	128400001	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:128400001T>C	uc003qbk.2	-	11	2207	c.1840A>G	c.(1840-1842)ACT>GCT	p.T614A	PTPRK_uc003qbj.2_Missense_Mutation_p.T614A|PTPRK_uc010kfc.2_Missense_Mutation_p.T614A|PTPRK_uc011ebu.1_Missense_Mutation_p.T614A|PTPRK_uc003qbl.1_Missense_Mutation_p.T484A|PTPRK_uc011ebv.1_Missense_Mutation_p.T614A	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	614	Extracellular (Potential).|Fibronectin type-III 4.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AACAATACAGTTATTGTGGTG	0.318													35	93					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128410902	128410902	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:128410902C>T	uc003qbk.2	-	8	1765	c.1398G>A	c.(1396-1398)AAG>AAA	p.K466K	PTPRK_uc003qbj.2_Silent_p.K466K|PTPRK_uc010kfc.2_Silent_p.K466K|PTPRK_uc011ebu.1_Silent_p.K466K|PTPRK_uc003qbl.1_Silent_p.K336K|PTPRK_uc011ebv.1_Silent_p.K466K	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	466	Extracellular (Potential).|Fibronectin type-III 2.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TTAGGATCATCTTGAGGCTGA	0.463													64	156					0	0	1	0	0
LAMA2	3908	broad.mit.edu	37	6	129670503	129670503	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:129670503G>A	uc003qbn.2	+	31	4602	c.4497G>A	c.(4495-4497)CGG>CGA	p.R1499R	LAMA2_uc003qbo.2_Silent_p.R1499R	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1499	Laminin EGF-like 16.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CTTGTCCACGGGGATATGAAG	0.443													45	104					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762616	130762617	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:130762616_130762617CC>GT	uc003qca.2	+	3	1920_1921	c.1049_1050CC>GT	c.(1048-1050)TCC>TGT	p.S350C	TMEM200A_uc010kfh.2_Missense_Mutation_p.S350C|TMEM200A_uc010kfi.2_Missense_Mutation_p.S350C|TMEM200A_uc003qcb.2_Missense_Mutation_p.S350C	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	350	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		AGGAATAATTCCATTGGGGAGT	0.52													31	61					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762727	130762727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:130762727C>T	uc003qca.2	+	3	2031	c.1160C>T	c.(1159-1161)TCC>TTC	p.S387F	TMEM200A_uc010kfh.2_Missense_Mutation_p.S387F|TMEM200A_uc010kfi.2_Missense_Mutation_p.S387F|TMEM200A_uc003qcb.2_Missense_Mutation_p.S387F	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	387	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TCCAATACATCCTTGCATTTG	0.527													27	51					0	0	1	0	0
MED23	9439	broad.mit.edu	37	6	131924268	131924268	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:131924268C>T	uc003qcs.1	-	16	2007	c.1833G>A	c.(1831-1833)CGG>CGA	p.R611R	MED23_uc003qcq.2_Silent_p.R617R|MED23_uc011eca.1_Silent_p.R252R|MED23_uc003qct.1_Silent_p.R617R|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	611					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		TATGATGCATCCGGTAGCTAA	0.438													50	65					0	0	1	0	0
TAAR6	319100	broad.mit.edu	37	6	132891536	132891536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:132891536C>T	uc011eck.1	+	1	76	c.76C>T	c.(76-78)CCC>TCC	p.P26S		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	26	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TGTGAAAATCCCCTTCTCGCC	0.507													51	64					0	0	1	0	0
MAP7	9053	broad.mit.edu	37	6	136683614	136683614	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:136683614C>T	uc003qgz.2	-	11	1746	c.1500G>A	c.(1498-1500)GAG>GAA	p.E500E	MAP7_uc011edf.1_Silent_p.E485E|MAP7_uc011edg.1_Silent_p.E530E|MAP7_uc010kgu.2_Silent_p.E522E|MAP7_uc011edh.1_Silent_p.E485E|MAP7_uc010kgv.2_Silent_p.E522E|MAP7_uc010kgs.2_Silent_p.E354E|MAP7_uc011edi.1_Silent_p.E354E|MAP7_uc010kgq.1_Silent_p.E406E|MAP7_uc003qha.1_Silent_p.E463E	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	500	Potential.				establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		GCTCCCTCCTCTCCCTTTCTT	0.532													51	125					0	0	1	0	0
MAP3K5	4217	broad.mit.edu	37	6	137019667	137019667	+	Missense_Mutation	SNP	G	A	A	rs145735047		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:137019667G>A	uc003qhc.2	-	4	1127	c.766C>T	c.(766-768)CGT>TGT	p.R256C	MAP3K5_uc011edk.1_Missense_Mutation_p.R101C|MAP3K5_uc010kgw.1_Missense_Mutation_p.R256C	NM_005923	NP_005914	Q99683	M3K5_HUMAN	mitogen-activated protein kinase kinase kinase	256					activation of JUN kinase activity|activation of MAPKK activity|cellular response to hydrogen peroxide|induction of apoptosis by extracellular signals|interspecies interaction between organisms		ATP binding|caspase activator activity|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein phosphatase binding	p.R256C(1)		ovary(2)|skin(2)|lung(1)	5	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00137)|OV - Ovarian serous cystadenocarcinoma(155;0.00569)		TGAATAAAACGATCCACAAGA	0.408													25	54					0	0	1	0	0
SLC35D3	340146	broad.mit.edu	37	6	137245604	137245604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:137245604G>A	uc003qhe.2	+	2	1186	c.1021G>A	c.(1021-1023)GGA>AGA	p.G341R		NM_001008783	NP_001008783	Q5M8T2	S35D3_HUMAN	solute carrier family 35, member D3	341					carbohydrate transport	integral to membrane				ovary(1)|central_nervous_system(1)	2	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000136)|OV - Ovarian serous cystadenocarcinoma(155;0.00365)		GCCCGGGGAGGGAGGAAATGG	0.682													11	16					0	0	1	0	0
OLIG3	167826	broad.mit.edu	37	6	137815270	137815270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:137815270G>A	uc003qhp.1	-	1	262	c.38C>T	c.(37-39)TCA>TTA	p.S13L		NM_175747	NP_786923	Q7RTU3	OLIG3_HUMAN	oligodendrocyte transcription factor 3	13					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0	Breast(32;0.165)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00161)|OV - Ovarian serous cystadenocarcinoma(155;0.00447)		GTCCGGAGATGAAGCTCTGCT	0.453													45	71					0	0	1	0	0
KIAA1244	57221	broad.mit.edu	37	6	138655863	138655863	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:138655863C>T	uc003qhu.2	+	33	5880	c.5880C>T	c.(5878-5880)ACC>ACT	p.T1960T		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1960					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GGAAAGAAACCCCTTCCGAGG	0.642													13	16					0	0	1	0	0
CCDC28A	25901	broad.mit.edu	37	6	139094851	139094851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:139094851G>A	uc003qie.2	+	1	195	c.40G>A	c.(40-42)GAA>AAA	p.E14K	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	14											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		GGGGGAGCAGGAAAAGGCGGG	0.617													77	134					0	0	1	0	0
PLAGL1	5325	broad.mit.edu	37	6	144263313	144263313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:144263313C>T	uc003qjv.2	-	3	1906	c.640G>A	c.(640-642)GAG>AAG	p.E214K	PLAGL1_uc003qjx.2_Missense_Mutation_p.E214K|PLAGL1_uc003qjy.2_Missense_Mutation_p.E214K|PLAGL1_uc010khl.2_Missense_Mutation_p.E214K|PLAGL1_uc010khm.2_Missense_Mutation_p.E214K|PLAGL1_uc003qjz.2_Missense_Mutation_p.E214K|PLAGL1_uc003qka.2_Missense_Mutation_p.E214K|PLAGL1_uc003qkb.2_Missense_Mutation_p.E162K|PLAGL1_uc003qkc.2_Missense_Mutation_p.E214K|PLAGL1_uc003qkd.2_Missense_Mutation_p.E162K|PLAGL1_uc003qke.2_Missense_Mutation_p.E214K|PLAGL1_uc003qkf.2_Missense_Mutation_p.E214K|PLAGL1_uc003qkg.2_Missense_Mutation_p.E162K|PLAGL1_uc003qkh.2_Missense_Mutation_p.E214K|PLAGL1_uc003qki.2_Missense_Mutation_p.E162K|PLAGL1_uc003qkj.2_Missense_Mutation_p.E214K|PLAGL1_uc003qkk.2_Missense_Mutation_p.E162K|PLAGL1_uc003qkl.2_Missense_Mutation_p.E162K|PLAGL1_uc003qkm.2_Missense_Mutation_p.E214K|PLAGL1_uc010khn.2_Missense_Mutation_p.E214K|PLAGL1_uc003qkn.2_Missense_Mutation_p.E162K|PLAGL1_uc003qko.2_Missense_Mutation_p.E214K|PLAGL1_uc003qkp.2_Missense_Mutation_p.E162K|PLAGL1_uc003qjw.2_Missense_Mutation_p.E162K	NM_002656	NP_002647	Q9UM63	PLAL1_HUMAN	pleiomorphic adenoma gene-like 1 isoform 1	214					cell cycle arrest|induction of apoptosis|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.74e-07)|GBM - Glioblastoma multiforme(68;0.0885)		TGCAAGCTCTCTTTCATCAGC	0.547											OREG0017707	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	47	111					0	0	1	0	0
TAB2	23118	broad.mit.edu	37	6	149699566	149699566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:149699566C>T	uc003qmj.2	+	3	693	c.515C>T	c.(514-516)CCC>CTC	p.P172L	TAB2_uc011eec.1_Missense_Mutation_p.P140L|TAB2_uc010kia.1_Missense_Mutation_p.P172L|TAB2_uc010kib.1_Missense_Mutation_p.P172L|TAB2_uc003qmk.3_RNA	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	172					activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						CAACAAACTCCCAGATTTAAT	0.423													23	52					0	0	1	0	0
AKAP12	9590	broad.mit.edu	37	6	151672703	151672703	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:151672703C>T	uc011eep.1	+	4	3417	c.3177C>T	c.(3175-3177)ACC>ACT	p.T1059T	AKAP12_uc003qoe.2_Silent_p.T1059T|AKAP12_uc003qof.2_Silent_p.T961T|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Silent_p.T954T	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1059					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		TGCCTGGCACCGGTGGGCCAG	0.557													17	29					0	0	1	0	0
AKAP12	9590	broad.mit.edu	37	6	151672877	151672877	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:151672877A>G	uc011eep.1	+	4	3591	c.3351A>G	c.(3349-3351)CCA>CCG	p.P1117P	AKAP12_uc003qoe.2_Silent_p.P1117P|AKAP12_uc003qof.2_Silent_p.P1019P|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Silent_p.P1012P	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	1117					G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		AGACCACCCCAGAAAGCTTTG	0.488													16	32					0	0	1	0	0
SYNE1	23345	broad.mit.edu	37	6	152552664	152552664	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:152552664C>T	uc010kiw.2	-	114	21503	c.20901G>A	c.(20899-20901)GTG>GTA	p.V6967V	SYNE1_uc010kiv.2_Silent_p.V1491V|SYNE1_uc003qos.3_Silent_p.V1491V|SYNE1_uc003qot.3_Silent_p.V6896V|SYNE1_uc003qou.3_Silent_p.V6967V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	6967	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TCACAAAATCCACTGTCAGCT	0.358										HNSCC(10;0.0054)			21	34					0	0	1	0	0
VIP	7432	broad.mit.edu	37	6	153076450	153076450	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:153076450C>G	uc003qpe.2	+	4	449	c.277C>G	c.(277-279)CTC>GTC	p.L93V	VIP_uc003qpf.2_Missense_Mutation_p.L93V|VIP_uc010kjd.2_Missense_Mutation_p.L93V	NM_003381	NP_003372	P01282	VIP_HUMAN	vasoactive intestinal peptide isoform 1	93					body fluid secretion|G-protein coupled receptor protein signaling pathway|positive regulation of cell proliferation	extracellular region	neuropeptide hormone activity				0		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;4.5e-11)|BRCA - Breast invasive adenocarcinoma(81;0.144)		CTTCAGTAAACTCTTGGGTCA	0.313													21	55					0	0	1	0	0
OPRM1	4988	broad.mit.edu	37	6	154412559	154412559	+	Silent	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:154412559T>G	uc003qpr.2	+	3	1353	c.1116T>G	c.(1114-1116)ACT>ACG	p.T372T	OPRM1_uc011efc.1_Silent_p.T291T|OPRM1_uc011efd.1_Silent_p.T272T|OPRM1_uc011efe.1_Silent_p.T465T|OPRM1_uc003qpn.2_Silent_p.T372T|OPRM1_uc003qpo.1_Silent_p.T372T|OPRM1_uc011eff.1_Silent_p.T372T|OPRM1_uc011efg.1_Silent_p.T372T|OPRM1_uc011efh.1_Silent_p.T372T|OPRM1_uc003qpq.1_Silent_p.T372T|OPRM1_uc003qpt.1_Silent_p.T372T|OPRM1_uc011efi.1_Silent_p.T372T|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Silent_p.T272T|OPRM1_uc003qpu.2_Silent_p.T272T	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	372	Cytoplasmic (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	GTCAGAACACTAGAGACCACC	0.418													31	44					0	0	1	0	0
NOX3	50508	broad.mit.edu	37	6	155732417	155732417	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:155732417C>T	uc003qqm.2	-	11	1489	c.1386G>A	c.(1384-1386)CGG>CGA	p.R462R		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	462	Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		GCTCACTCATCCGTGTTTCCA	0.388													22	41					0	0	1	0	0
SERAC1	84947	broad.mit.edu	37	6	158565364	158565364	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:158565364A>G	uc003qrc.2	-	7	718	c.576T>C	c.(574-576)TTT>TTC	p.F192F	SERAC1_uc003qrb.2_5'UTR	NM_032861	NP_116250	Q96JX3	SRAC1_HUMAN	serine active site containing 1	192					GPI anchor metabolic process|intracellular protein transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	binding|hydrolase activity, acting on ester bonds				0		Breast(66;0.00519)|Ovarian(120;0.123)|Prostate(117;0.178)		OV - Ovarian serous cystadenocarcinoma(65;1.37e-18)|BRCA - Breast invasive adenocarcinoma(81;3.19e-05)		GTGGTAGGAGAAAAAAGCGAA	0.338													28	63					0	0	1	0	0
TAGAP	117289	broad.mit.edu	37	6	159458115	159458115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:159458115C>T	uc003qrz.2	-	10	1272	c.940G>A	c.(940-942)GAC>AAC	p.D314N	TAGAP_uc011eft.1_Missense_Mutation_p.D251N|TAGAP_uc003qsa.2_Missense_Mutation_p.D136N	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	314					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		ACATCAGGGTCGTTGCTGTCG	0.532													45	119					0	0	1	0	0
SLC22A1	6580	broad.mit.edu	37	6	160551162	160551162	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:160551162G>A	uc003qtc.2	+	2	543	c.438G>A	c.(436-438)TGG>TGA	p.W146*	SLC22A1_uc003qtd.2_Nonsense_Mutation_p.W146*	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a	146	Extracellular (Potential).					basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		CTGACTCCTGGAAGCTGGACC	0.517													41	112					0	0	1	0	0
SLC22A1	6580	broad.mit.edu	37	6	160553263	160553263	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:160553263G>A	uc003qtc.2	+	3	621	c.516_splice	c.e3-1	p.R172_splice	SLC22A1_uc003qtd.2_Splice_Site_p.R172_splice	NM_003057	NP_003048	O15245	S22A1_HUMAN	solute carrier family 22 member 1 isoform a							basolateral plasma membrane|integral to plasma membrane|membrane fraction	organic cation transmembrane transporter activity|protein binding				0		Breast(66;0.000776)|Ovarian(120;0.00556)		OV - Ovarian serous cystadenocarcinoma(65;2.73e-17)|BRCA - Breast invasive adenocarcinoma(81;1.1e-06)		TCTCTCTGAAGGTTTGGCCGT	0.587													117	212					0	0	1	0	0
SLC22A2	6582	broad.mit.edu	37	6	160662516	160662516	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:160662516C>T	uc003qtf.2	-	9	1661	c.1491G>A	c.(1489-1491)CTG>CTA	p.L497L	SLC22A2_uc003qte.1_Silent_p.L497L	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	497	Helical; (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		CGAAAACCATCAGCGGGAGCT	0.438													31	56					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	161012080	161012080	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:161012080C>A	uc003qtl.2	-	24	3803	c.3683G>T	c.(3682-3684)TGT>TTT	p.C1228F		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3736	Kringle 33.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CATGGTATAACACCAAGGACT	0.468													12	46					1.41608e-15	1.4326e-15	1	1	0
LPA	4018	broad.mit.edu	37	6	161071386	161071386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:161071386C>T	uc003qtl.2	-	3	313	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	2573	Kringle 23.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	GGGTAGTTTTCTGTGGTCCTA	0.418													91	177					0	0	1	0	0
PLG	5340	broad.mit.edu	37	6	161127554	161127554	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:161127554G>A	uc003qtm.3	+	2	228	c.165G>A	c.(163-165)GAG>GAA	p.E55E		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	55	PAN.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AATGTGAGGAGGACGAAGAAT	0.423													50	94					0	0	1	0	0
PARK2	5071	broad.mit.edu	37	6	162622179	162622179	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:162622179G>A	uc003qtx.3	-	4	652	c.518C>T	c.(517-519)ACG>ATG	p.T173M	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Translation_Start_Site|PARK2_uc003qtw.3_Intron|PARK2_uc003qty.3_Missense_Mutation_p.T173M|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Missense_Mutation_p.T173M	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	173					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		CAAGGTGAGCGTTGCCTGCCT	0.463													30	55					0	0	1	0	0
C6orf118	168090	broad.mit.edu	37	6	165715373	165715373	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:165715373G>A	uc003qum.3	-	2	474	c.438C>T	c.(436-438)TTC>TTT	p.F146F	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	146											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CCACTGGAAGGAAATCCTCCT	0.627													34	79					0	0	1	0	0
CCR6	1235	broad.mit.edu	37	6	167550408	167550408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:167550408G>A	uc003qvl.2	+	13	3166	c.690G>A	c.(688-690)ATG>ATA	p.M230I	CCR6_uc010kkm.2_Missense_Mutation_p.M230I|CCR6_uc003qvn.3_Missense_Mutation_p.M230I|CCR6_uc003qvm.3_Missense_Mutation_p.M230I	NM_031409	NP_113597	P51684	CCR6_HUMAN	chemokine (C-C motif) receptor 6	230	Helical; Name=5; (Potential).				cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|humoral immune response	integral to plasma membrane	C-C chemokine receptor activity			ovary(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;8.21e-20)|BRCA - Breast invasive adenocarcinoma(81;4.55e-06)|GBM - Glioblastoma multiforme(31;0.00507)		TGATGTTCATGATATTTTGTT	0.448													33	57					0	0	1	0	0
FRMD1	79981	broad.mit.edu	37	6	168465650	168465650	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:168465650G>A	uc003qwo.3	-	5	614	c.549C>T	c.(547-549)TTC>TTT	p.F183F	FRMD1_uc003qwm.3_5'UTR|FRMD1_uc011egs.1_5'UTR|FRMD1_uc011egt.1_Silent_p.F95F|FRMD1_uc003qwn.3_Silent_p.F115F	NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	183	FERM.					cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		CAGCCAGCAGGAAGTAGGCTT	0.657													26	23					0	0	1	0	0
WDR27	253769	broad.mit.edu	37	6	170072476	170072476	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:170072476C>T	uc003qwx.2	-	3	726	c.206G>A	c.(205-207)GGA>GAA	p.G69E	WDR27_uc010kkw.1_Missense_Mutation_p.G69E|WDR27_uc003qwy.2_Missense_Mutation_p.G69E|WDR27_uc011egw.1_RNA|WDR27_uc010kkx.2_Missense_Mutation_p.G69E			A2RRH5	WDR27_HUMAN	RecName: Full=WD repeat-containing protein 27;	69	WD 2.									pancreas(1)	1		Breast(66;1.53e-05)|Ovarian(120;0.216)		OV - Ovarian serous cystadenocarcinoma(33;6.48e-20)|BRCA - Breast invasive adenocarcinoma(81;3.56e-07)|GBM - Glioblastoma multiforme(31;0.00168)		CTGATGGTGTCCTCGTAGGAT	0.343													7	9					0	0	1	0	0
PDCD2	5134	broad.mit.edu	37	6	170892152	170892152	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:170892152C>T	uc003qxw.2	-	3	730	c.651G>A	c.(649-651)GGG>GGA	p.G217G	PDCD2_uc003qxv.2_Silent_p.G184G|PDCD2_uc003qxx.1_Silent_p.G217G|PDCD2_uc003qxy.2_Silent_p.G184G|PDCD2_uc003qxz.2_Silent_p.G217G|PDCD2_uc003qya.2_Silent_p.G184G|PDCD2_uc003qyb.1_Silent_p.G140G	NM_002598	NP_002589	Q16342	PDCD2_HUMAN	programmed cell death 2 isoform 1	217					apoptosis	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding				0		Breast(66;5.08e-05)|Ovarian(120;0.125)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;6.91e-23)|BRCA - Breast invasive adenocarcinoma(81;4.82e-06)|GBM - Glioblastoma multiforme(31;0.142)		TACCCATGCTCCCTATAATCT	0.388													36	66					0	0	1	0	0
CYP2W1	54905	broad.mit.edu	37	7	1024696	1024696	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:1024696G>A	uc003sjq.1	+	3	461	c.448G>A	c.(448-450)GAG>AAG	p.E150K	CYP2W1_uc003sjr.1_Missense_Mutation_p.E150K	NM_017781	NP_060251	Q8TAV3	CP2W1_HUMAN	cytochrome P450, family 2, subfamily W,	150					xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;1.74e-15)		GATTCTGCAGGAGCTGAAATG	0.706													14	17					0	0	1	0	0
C7orf27	221927	broad.mit.edu	37	7	2583265	2583266	+	Missense_Mutation	DNP	GG	AA	AA	rs143192367		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:2583265_2583266GG>AA	uc003smi.2	-	5	803_804	c.761_762CC>TT	c.(760-762)CCC>CTT	p.P254L	C7orf27_uc003smh.3_5'Flank|C7orf27_uc003smj.1_Missense_Mutation_p.P254L	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	254					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		AGTGTGCGGCGGGGATGGGGTC	0.683													28	89					0	0	1	0	0
FBXL18	80028	broad.mit.edu	37	7	5529770	5529770	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:5529770G>A	uc003soo.2	-	5	2168	c.2074C>T	c.(2074-2076)CGA>TGA	p.R692*	FBXL18_uc003son.3_Intron	NM_024963	NP_079239	Q96ME1	FXL18_HUMAN	F-box and leucine-rich repeat protein 18	692										central_nervous_system(2)|ovary(1)	3		Ovarian(82;0.0607)		UCEC - Uterine corpus endometrioid carcinoma (126;0.181)|OV - Ovarian serous cystadenocarcinoma(56;3.64e-13)		CCAGTGGCTCGAGACGTCCTG	0.617													8	11					0	0	1	0	0
ACTB	60	broad.mit.edu	37	7	5568815	5568815	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:5568815C>T	uc003sos.3	-	2	376	c.340G>A	c.(340-342)GCC>ACC	p.A114T	ACTB_uc003sor.3_5'UTR|ACTB_uc003sot.3_Missense_Mutation_p.A114T|ACTB_uc003soq.3_5'UTR|ACTB_uc010ksy.2_Intron	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	114					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		TCGCGGTTGGCCTTGGGGTTC	0.642													31	58					0	0	1	0	0
ZDHHC4	55146	broad.mit.edu	37	7	6628278	6628278	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:6628278T>C	uc003sqi.2	+	9	1130	c.772T>C	c.(772-774)TTC>CTC	p.F258L	ZDHHC4_uc003sql.2_Missense_Mutation_p.F258L|ZDHHC4_uc003sqh.2_Missense_Mutation_p.F258L|ZDHHC4_uc003sqj.2_Missense_Mutation_p.F258L|ZDHHC4_uc003sqk.2_Missense_Mutation_p.F258L|ZDHHC4_uc003sqm.2_Missense_Mutation_p.F258L|C7orf26_uc003sqo.1_5'Flank|C7orf26_uc003sqp.1_5'Flank|C7orf26_uc003sqq.1_5'Flank	NM_001134388	NP_001127860	Q9NPG8	ZDHC4_HUMAN	zinc finger, DHHC-type containing 4	258	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			breast(1)|pancreas(1)	2		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.1)		ACGGATTGTCTTCATGCTGGG	0.512													78	183					0	0	1	0	0
ICA1	3382	broad.mit.edu	37	7	8258065	8258065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:8258065G>A	uc003srm.2	-	6	516	c.449C>T	c.(448-450)TCA>TTA	p.S150L	ICA1_uc010ktr.2_Missense_Mutation_p.S150L|ICA1_uc003srl.2_Missense_Mutation_p.S138L|ICA1_uc003srn.3_Missense_Mutation_p.S76L|ICA1_uc003srp.3_Missense_Mutation_p.S149L|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Missense_Mutation_p.S150L|ICA1_uc003srr.2_Missense_Mutation_p.S149L|ICA1_uc003sro.3_Missense_Mutation_p.S150L|ICA1_uc011jxg.1_Missense_Mutation_p.S150L|ICA1_uc003srs.1_Missense_Mutation_p.S150L	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	150	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		CCAAGTATCTGAGATGGCCCG	0.488													43	58					0	0	1	0	0
PHF14	9678	broad.mit.edu	37	7	11076171	11076171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:11076171C>T	uc003sry.1	+	9	2164	c.1729C>T	c.(1729-1731)CGT>TGT	p.R577C	PHF14_uc011jxi.1_Missense_Mutation_p.R292C|PHF14_uc003srz.2_Missense_Mutation_p.R577C|PHF14_uc011jxj.1_Missense_Mutation_p.R292C	NM_014660	NP_055475	O94880	PHF14_HUMAN	PHD finger protein 14 isoform 2	577							zinc ion binding			kidney(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.205)		TTCAGCTATTCGTAAACTTAT	0.473													23	50					0	0	1	0	0
MACC1	346389	broad.mit.edu	37	7	20201469	20201469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:20201469C>T	uc003sus.3	-	4	326	c.17G>A	c.(16-18)AGA>AAA	p.R6K	MACC1_uc010kug.2_Missense_Mutation_p.R6K	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	6					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						AAAATGTTTTCTTTCAGTGAT	0.333													31	71					0	0	1	0	0
ABCB5	340273	broad.mit.edu	37	7	20762824	20762824	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:20762824A>G	uc003suw.3	+	12	1818	c.1272A>G	c.(1270-1272)GAA>GAG	p.E424E	ABCB5_uc010kuh.2_Silent_p.E869E|ABCB5_uc003sux.1_Silent_p.E47E	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	424	Cytoplasmic (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ATAAGCAAGAACTTAAGCATG	0.368													10	38					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21742362	21742362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:21742362C>T	uc003svc.2	+	38	6267	c.6236C>T	c.(6235-6237)TCT>TTT	p.S2079F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2079	AAA 1 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GCTATTAAGTCTGTCTTGGTT	0.398									Kartagener_syndrome				13	27					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21932281	21932281	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:21932281A>T	uc003svc.2	+	78	12798	c.12767A>T	c.(12766-12768)GAA>GTA	p.E4256V		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	4256					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCTACAGAAGAAAAGGTAGAG	0.308									Kartagener_syndrome				3	5					0	0	1	0	0
IGF2BP3	10643	broad.mit.edu	37	7	23401339	23401339	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:23401339G>A	uc003swg.2	-	4	573	c.307C>T	c.(307-309)CAG>TAG	p.Q103*		NM_006547	NP_006538	O00425	IF2B3_HUMAN	insulin-like growth factor 2 mRNA binding	103	RRM 2.				anatomical structure morphogenesis|negative regulation of translation|translation	cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			ovary(2)	2						ACTCCATACTGGACTAGTAAA	0.363													17	31					0	0	1	0	0
PDE1C	5137	broad.mit.edu	37	7	31917630	31917630	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:31917630T>C	uc003tcm.1	-	5	914	c.445A>G	c.(445-447)AAC>GAC	p.N149D	PDE1C_uc003tcn.1_Missense_Mutation_p.N149D|PDE1C_uc003tco.1_Missense_Mutation_p.N209D|PDE1C_uc003tcr.2_Missense_Mutation_p.N149D|PDE1C_uc003tcs.2_Missense_Mutation_p.N149D	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	149					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CCAACCATGTTTGATGTCCGT	0.348													25	44					0	0	1	0	0
BMPER	168667	broad.mit.edu	37	7	34192875	34192875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:34192875C>T	uc011kap.1	+	15	2162	c.2048C>T	c.(2047-2049)CCC>CTC	p.P683L		NM_133468	NP_597725	Q8N8U9	BMPER_HUMAN	BMP-binding endothelial regulator precursor	683					blood vessel endothelial cell proliferation involved in sprouting angiogenesis|endothelial cell activation|negative regulation of BMP signaling pathway|positive regulation of ERK1 and ERK2 cascade|regulation of endothelial cell migration|regulation of pathway-restricted SMAD protein phosphorylation	extracellular space				ovary(2)|central_nervous_system(1)	3						GTCCTTTGTCCCCAGCGGTGA	0.507													41	53					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34851469	34851469	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:34851469C>T	uc003teg.1	+	4	600	c.472C>T	c.(472-474)CAA>TAA	p.Q158*	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Nonsense_Mutation_p.Q158*|NPSR1_uc010kwt.1_Nonsense_Mutation_p.Q5*|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Nonsense_Mutation_p.Q158*|NPSR1_uc010kww.1_Nonsense_Mutation_p.Q147*|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	158	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GAAGTTCCTTCAAGGAGGTGA	0.443													46	72					0	0	1	0	0
AOAH	313	broad.mit.edu	37	7	36726373	36726373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:36726373C>T	uc003tfh.3	-	2	555	c.154G>A	c.(154-156)GAA>AAA	p.E52K	AOAH_uc010kxf.2_Missense_Mutation_p.E52K|AOAH_uc011kba.1_Intron	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	52	Saposin B-type.				inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						GCAAGCTGTTCTATTACAGAC	0.512													32	68					0	0	1	0	0
TXNDC3	51314	broad.mit.edu	37	7	37889885	37889885	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:37889885G>T	uc003tfn.2	+	3	389	c.17G>T	c.(16-18)CGA>CTA	p.R6L		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	6	Thioredoxin.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AGCAAAAAACGAGAAGTCCAG	0.338									Kartagener_syndrome				45	122					7.77372e-23	7.92151e-23	1	1	0
VPS41	27072	broad.mit.edu	37	7	38829439	38829439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:38829439C>T	uc003tgy.2	-	10	772	c.746G>A	c.(745-747)AGT>AAT	p.S249N	VPS41_uc003tgz.2_Missense_Mutation_p.S224N|VPS41_uc010kxn.2_Missense_Mutation_p.S160N	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	249					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						CCTCATTTCACTGGCATGCCG	0.328													45	80					0	0	1	0	0
VPS41	27072	broad.mit.edu	37	7	38857430	38857430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:38857430G>A	uc003tgy.2	-	7	463	c.437C>T	c.(436-438)ACC>ATC	p.T146I	VPS41_uc003tgz.2_Missense_Mutation_p.T121I|VPS41_uc010kxn.2_Missense_Mutation_p.T146I	NM_014396	NP_055211	P49754	VPS41_HUMAN	vacuolar protein sorting 41 isoform 1	146					Golgi vesicle transport|intracellular protein transport|vesicle-mediated transport	cytosol|Golgi-associated vesicle|HOPS complex|membrane fraction	zinc ion binding			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4						CTTCCCTCCGGTCACAAACTG	0.438													52	96					0	0	1	0	0
HECW1	23072	broad.mit.edu	37	7	43508545	43508545	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:43508545C>T	uc003tid.1	+	16	3545	c.2940C>T	c.(2938-2940)AGC>AGT	p.S980S	HECW1_uc011kbi.1_Silent_p.S946S	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	980					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TCACCAGTAGCACCTGCTTAA	0.502													17	47					0	0	1	0	0
DDX56	54606	broad.mit.edu	37	7	44611980	44611980	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:44611980A>G	uc003tlg.2	-	5	1254	c.611T>C	c.(610-612)GTA>GCA	p.V204A	DDX56_uc003tle.2_RNA|DDX56_uc003tlf.2_Missense_Mutation_p.V140A|DDX56_uc003tlh.2_RNA|DDX56_uc010kyg.2_Missense_Mutation_p.V204A|DDX56_uc010kyh.1_RNA	NM_019082	NP_061955	Q9NY93	DDX56_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	204	Helicase ATP-binding.				rRNA processing	nucleolus	ATP binding|ATP-dependent RNA helicase activity|identical protein binding|RNA binding			upper_aerodigestive_tract(1)	1						GAGTGCTTGTACGTCCTCGTT	0.488													13	34					0	0	1	0	0
RAMP3	10268	broad.mit.edu	37	7	45222933	45222933	+	Silent	SNP	C	T	T	rs148542783		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:45222933C>T	uc003tnb.2	+	3	430	c.369C>T	c.(367-369)ATC>ATT	p.I123I	RAMP3_uc003tnc.2_Silent_p.I91I	NM_005856	NP_005847	O60896	RAMP3_HUMAN	receptor activity modifying protein 3 precursor	123	Helical; (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	integral to plasma membrane|lysosome	protein transporter activity				0					Pramlintide(DB01278)	TCCCGCTGATCGTTATACCCG	0.617													73	156					0	0	1	0	0
SUN3	256979	broad.mit.edu	37	7	48026965	48026965	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:48026965G>A	uc003tof.2	-	11	1133	c.1036C>T	c.(1036-1038)CGA>TGA	p.R346*	SUN3_uc010kyq.2_Nonsense_Mutation_p.R258*|SUN3_uc003tog.2_Nonsense_Mutation_p.R346*|SUN3_uc011kcf.1_Nonsense_Mutation_p.R334*	NM_152782	NP_689995	Q8TAQ9	SUN3_HUMAN	Sad1 and UNC84 domain containing 1	346	SUN.					integral to membrane				central_nervous_system(1)	1						ACCCTGAATCGATATAAACAA	0.383													61	121					0	0	1	0	0
POM121L12	285877	broad.mit.edu	37	7	53103871	53103871	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:53103871C>T	uc003tpz.2	+	1	523	c.507C>T	c.(505-507)CTC>CTT	p.L169L		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	169											0						cccAGGAGCTCCTGGACCCCT	0.577													12	14					0	0	1	0	0
VSTM2A	222008	broad.mit.edu	37	7	54617635	54617635	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:54617635G>A	uc010kzf.2	+	4	811	c.406G>A	c.(406-408)GAG>AAG	p.E136K	VSTM2A_uc010kze.2_Missense_Mutation_p.E136K|VSTM2A_uc003tqc.3_Missense_Mutation_p.E136K	NM_182546	NP_872352	Q8TAG5	VTM2A_HUMAN	V-set and transmembrane domain containing 2	136	Ig-like V-type.					extracellular region					0			STAD - Stomach adenocarcinoma(5;0.0525)			CAACTACGGGGAGCTTCAGGA	0.527													7	12					0	0	1	0	0
EGFR	1956	broad.mit.edu	37	7	55223557	55223557	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:55223557C>T	uc003tqk.2	+	8	1170	c.924C>T	c.(922-924)GTC>GTT	p.V308V	EGFR_uc003tqh.2_Silent_p.V308V|EGFR_uc003tqi.2_Silent_p.V308V|EGFR_uc003tqj.2_Silent_p.V308V|EGFR_uc010kzg.1_Silent_p.V263V|EGFR_uc011kco.1_Silent_p.V255V|EGFR_uc011kcp.1_5'Flank|EGFR_uc011kcq.1_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	308	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GCTCGTGCGTCCGAGCCTGTG	0.607		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			25	54					0	0	1	0	0
FKBP9L	360132	broad.mit.edu	37	7	55759024	55759024	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:55759024C>T	uc010kzl.2	-	3	358	c.258G>A	c.(256-258)GGG>GGA	p.G86G	FKBP9L_uc003tqt.2_5'Flank|FKBP9L_uc011kcs.1_5'Flank	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						CCAGCAGGGTCCCATCCAGAA	0.537													10	23					0	0	1	0	0
ZNF713	349075	broad.mit.edu	37	7	56007557	56007557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:56007557C>T	uc003trc.1	+	4	1189	c.1151C>T	c.(1150-1152)CCC>CTC	p.P384L	ZNF713_uc003tra.1_Missense_Mutation_p.P397L|MRPS17_uc003trb.2_Intron	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	384					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GGAGAGAAACCCTATAAATGT	0.408													20	32					0	0	1	0	0
ZNF479	90827	broad.mit.edu	37	7	57194390	57194390	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:57194390G>A	uc010kzo.2	-	3	346	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	25	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			CCTCCAGAGAGAATTCTATAG	0.443													17	63					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57528639	57528639	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:57528639C>T	uc011kdi.1	+	4	584	c.472C>T	c.(472-474)CAG>TAG	p.Q158*		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						CAAAACATTTCAGACTCATAA	0.333													6	6					0	0	1	0	0
ZNF716	441234	broad.mit.edu	37	7	57529181	57529181	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:57529181C>T	uc011kdi.1	+	4	1126	c.1014C>T	c.(1012-1014)ACC>ACT	p.T338T		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						TATCCTCAACCCTTAAGAAAC	0.398													7	41					0	0	1	0	0
ZNF107	51427	broad.mit.edu	37	7	64167982	64167982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:64167982C>T	uc003ttd.2	+	7	2086	c.1300C>T	c.(1300-1302)CAT>TAT	p.H434Y	ZNF107_uc003tte.2_Missense_Mutation_p.H434Y	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	434	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TAAGAAAATTCATACTGGAGA	0.353													18	44					0	0	1	0	0
WBSCR17	64409	broad.mit.edu	37	7	71177029	71177029	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:71177029G>A	uc003tvy.2	+	11	1695	c.1695G>A	c.(1693-1695)ACG>ACA	p.T565T	WBSCR17_uc003tvz.2_Silent_p.T264T	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	565	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				ACAAGGGCACGGGACGCTGCC	0.428													105	92					0	0	1	0	0
FKBP6	8468	broad.mit.edu	37	7	72745695	72745695	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:72745695G>A	uc003tya.2	+	5	636	c.504G>A	c.(502-504)CTG>CTA	p.L168L	FKBP6_uc003twz.2_Silent_p.L138L|FKBP6_uc011kew.1_Silent_p.L163L|FKBP6_uc010lbe.1_RNA	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	168					protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				AGAAGGTCCTGAAAGTGGCAG	0.453													38	94					0	0	1	0	0
BAZ1B	9031	broad.mit.edu	37	7	72892705	72892705	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:72892705A>G	uc003tyc.2	-	7	1431	c.1086T>C	c.(1084-1086)CCT>CCC	p.P362P		NM_032408	NP_115784	Q9UIG0	BAZ1B_HUMAN	bromodomain adjacent to zinc finger domain, 1B	362	Lys-rich.				ATP-dependent chromatin remodeling|chromatin-mediated maintenance of transcription|DNA replication-dependent nucleosome disassembly|double-strand break repair|heart morphogenesis|transcription, DNA-dependent	WINAC complex	ATP binding|chromatin binding|histone acetyl-lysine binding|histone kinase activity|non-membrane spanning protein tyrosine kinase activity|protein complex scaffold|vitamin D receptor activator activity|vitamin D receptor binding|zinc ion binding	p.P362S(1)		ovary(4)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	7		Lung NSC(55;0.0659)|all_lung(88;0.152)				GATGTTCTTCAGGAGATTTGG	0.423													20	41					0	0	1	0	0
ELN	2006	broad.mit.edu	37	7	73455548	73455548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:73455548C>T	uc003tzw.2	+	5	290	c.199C>T	c.(199-201)CCC>TCC	p.P67S	RFC2_uc011kfa.1_Intron|ELN_uc003tzm.1_RNA|ELN_uc011kfe.1_Missense_Mutation_p.P67S|ELN_uc003tzn.2_Missense_Mutation_p.P67S|ELN_uc003tzz.2_Intron|ELN_uc003tzo.2_Missense_Mutation_p.P67S|ELN_uc003tzp.2_Missense_Mutation_p.P57S|ELN_uc003tzq.2_Missense_Mutation_p.P67S|ELN_uc003tzr.2_RNA|ELN_uc003tzs.2_Missense_Mutation_p.P67S|ELN_uc003tzt.2_Missense_Mutation_p.P67S|ELN_uc003tzu.2_Missense_Mutation_p.P67S|ELN_uc003tzv.2_Missense_Mutation_p.P57S|ELN_uc003tzx.2_Missense_Mutation_p.P57S|ELN_uc011kff.1_Missense_Mutation_p.P67S|ELN_uc003tzy.2_Missense_Mutation_p.P57S	NM_000501	NP_001075224	P15502	ELN_HUMAN	elastin isoform a precursor	67					blood circulation|cell proliferation|organ morphogenesis|respiratory gaseous exchange	proteinaceous extracellular matrix	extracellular matrix constituent conferring elasticity|protein binding			ovary(3)|pancreas(2)	5		Lung NSC(55;0.159)			Rofecoxib(DB00533)	ATCCACAGTTCCCGGAGGGCT	0.592			T	PAX5	B-ALL		Supravalvular Aortic Stenosis|Cutis laxa |Williams-Beuren Syndrome						162	485					0	0	1	0	0
RFC2	5982	broad.mit.edu	37	7	73646450	73646450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:73646450G>A	uc003uaj.2	-	11	1076	c.1051C>T	c.(1051-1053)CCG>TCG	p.P351S	RFC2_uc011kfa.1_RNA|RFC2_uc003uak.2_Missense_Mutation_p.P317S|RFC2_uc010lbp.2_Missense_Mutation_p.P280S|RFC2_uc003ual.2_Missense_Mutation_p.P250S	NM_181471	NP_852136	P35250	RFC2_HUMAN	replication factor C 2 isoform 1	351					cell cycle checkpoint|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|protein binding			liver(1)|central_nervous_system(1)	2						CTGGCCACCGGGGCCATTGTC	0.522													141	145					0	0	1	0	0
RHBDD2	57414	broad.mit.edu	37	7	75517490	75517490	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:75517490G>A	uc003udw.1	+	4	1002	c.918G>A	c.(916-918)GTG>GTA	p.V306V	RHBDD2_uc003udv.1_Silent_p.V165V	NM_001040456	NP_001035546	Q6NTF9	RHBD2_HUMAN	rhomboid domain containing 2 isoform a	306						integral to membrane	serine-type endopeptidase activity				0						TGTGCTATGTGCAGAACCACT	0.662													80	278					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82544559	82544559	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:82544559T>A	uc003uhx.2	-	7	13032	c.12743A>T	c.(12742-12744)AAT>ATT	p.N4248I	PCLO_uc003uhv.2_Missense_Mutation_p.N4248I|PCLO_uc010lec.2_Missense_Mutation_p.N1213I	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4179					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTCTGTAATATTTTTTCTGAG	0.428													14	33					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82580234	82580234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:82580234C>T	uc003uhx.2	-	6	9959	c.9670G>A	c.(9670-9672)GAG>AAG	p.E3224K	PCLO_uc003uhv.2_Missense_Mutation_p.E3224K|PCLO_uc010lec.2_Missense_Mutation_p.E189K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3155	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTAATTTTCTCCAGTTCCAGG	0.438													17	57					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82580518	82580518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:82580518G>A	uc003uhx.2	-	6	9675	c.9386C>T	c.(9385-9387)TCA>TTA	p.S3129L	PCLO_uc003uhv.2_Missense_Mutation_p.S3129L|PCLO_uc010lec.2_Missense_Mutation_p.S94L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3060					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCAGGTAATGAAGTCACTGC	0.448													12	34					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82581227	82581227	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:82581227A>T	uc003uhx.2	-	5	9331	c.9042T>A	c.(9040-9042)GAT>GAA	p.D3014E	PCLO_uc003uhv.2_Missense_Mutation_p.D3014E|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2945					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CTTCAGAATAATCAAAAGCAT	0.393													33	76					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82763871	82763871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:82763871C>T	uc003uhx.2	-	3	3284	c.2995G>A	c.(2995-2997)GAA>AAA	p.E999K	PCLO_uc003uhv.2_Missense_Mutation_p.E999K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	945	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCTTTTGTTTCCTTTTTCACA	0.468													10	45					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82764246	82764246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:82764246C>T	uc003uhx.2	-	3	2909	c.2620G>A	c.(2620-2622)GGG>AGG	p.G874R	PCLO_uc003uhv.2_Missense_Mutation_p.G874R	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	820	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTTGGTGACCCTTTTGGCATT	0.517													208	210					0	0	1	0	0
SEMA3E	9723	broad.mit.edu	37	7	83095835	83095836	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:83095835_83095836GG>AA	uc003uhy.1	-	4	884_885	c.418_419CC>TT	c.(418-420)CCA>TTA	p.P140L		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	140	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				GGCACAAACTGGATCAAAAGCT	0.386													27	69					0	0	1	0	0
SEMA3D	223117	broad.mit.edu	37	7	84697540	84697540	+	Missense_Mutation	SNP	C	T	T	rs148351346	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:84697540C>T	uc003uic.2	-	5	596	c.556G>A	c.(556-558)GAT>AAT	p.D186N	SEMA3D_uc010led.2_Missense_Mutation_p.D186N|SEMA3D_uc010lee.1_Missense_Mutation_p.D186N	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	186	Sema.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						TGCTGAGGATCGAAAGGACAT	0.343													58	61					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86416132	86416133	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:86416132_86416133CC>TT	uc003uid.2	+	3	2123_2124	c.1024_1025CC>TT	c.(1024-1026)CCC>TTC	p.P342F	GRM3_uc010lef.2_Missense_Mutation_p.P340F|GRM3_uc010leg.2_Missense_Mutation_p.P214F|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	342	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	GAGCCTCAACCCCTACAACAAC	0.609													4	32					0	0	1	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86509798	86509798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:86509798G>A	uc011kha.1	-	22	3264	c.3079C>T	c.(3079-3081)CCA>TCA	p.P1027S	KIAA1324L_uc003uif.1_Missense_Mutation_p.P787S|KIAA1324L_uc011kgz.1_Missense_Mutation_p.P913S|KIAA1324L_uc003uie.2_Missense_Mutation_p.P860S	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	1027	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					CATATATTTGGGGATCTTGAG	0.353													14	43					0	0	1	0	0
C7orf23	79161	broad.mit.edu	37	7	86827293	86827293	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:86827293G>A	uc003uio.2	-	3	410	c.198C>T	c.(196-198)GTC>GTT	p.V66V		NM_024315	NP_077291	Q9BU79	CG023_HUMAN	chromosome 7 open reading frame 23	66	Helical; (Potential).					integral to membrane					0	Esophageal squamous(14;0.0058)|all_lung(186;0.191)|Lung NSC(181;0.192)					AAGAGATGCAGACAGCAAAGA	0.373										HNSCC(41;0.11)			76	85					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87746109	87746109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:87746109C>T	uc003ujn.2	+	7	666	c.587C>T	c.(586-588)TCC>TTC	p.S196F	ADAM22_uc003uji.1_Missense_Mutation_p.S195F|ADAM22_uc003ujj.1_Missense_Mutation_p.S196F|ADAM22_uc003ujk.1_Missense_Mutation_p.S196F|ADAM22_uc003ujl.1_Missense_Mutation_p.S196F|ADAM22_uc003ujm.2_Missense_Mutation_p.S196F|ADAM22_uc003ujo.2_Missense_Mutation_p.S196F|ADAM22_uc003ujp.1_Missense_Mutation_p.S248F	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	196					cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TTTGAATTTTCCTTGGATGAT	0.318													15	47					0	0	1	0	0
ADAM22	53616	broad.mit.edu	37	7	87759716	87759716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:87759716G>A	uc003ujn.2	+	10	846	c.767G>A	c.(766-768)CGG>CAG	p.R256Q	ADAM22_uc003ujj.1_Missense_Mutation_p.R256Q|ADAM22_uc003ujk.1_Missense_Mutation_p.R256Q|ADAM22_uc003ujl.1_Missense_Mutation_p.R256Q|ADAM22_uc003ujm.2_Missense_Mutation_p.R256Q|ADAM22_uc003ujo.2_Missense_Mutation_p.R256Q|ADAM22_uc003ujp.1_Missense_Mutation_p.R308Q	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	256	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			AAAAAACATCGGCTTTCCGTT	0.368													28	90					0	0	1	0	0
C7orf63	79846	broad.mit.edu	37	7	89884766	89884766	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:89884766T>C	uc010lep.2	+	2	401	c.150T>C	c.(148-150)CGT>CGC	p.R50R	C7orf63_uc003ukf.2_RNA|C7orf63_uc003ukg.2_5'UTR|C7orf63_uc011khj.1_Silent_p.R50R|C7orf63_uc010leo.2_Silent_p.R50R	NM_001039706	NP_001034795	A5D8W1	CG063_HUMAN	hypothetical protein LOC79846 isoform 1	50							binding			ovary(1)	1						ACCTTAATCGTGTCATCAAAC	0.333													108	115					0	0	1	0	0
AKAP9	10142	broad.mit.edu	37	7	91631209	91631209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:91631209G>A	uc003ulg.2	+	8	2203	c.1978G>A	c.(1978-1980)GGC>AGC	p.G660S	AKAP9_uc003ule.2_Missense_Mutation_p.G672S|AKAP9_uc003ulf.2_Missense_Mutation_p.G660S|AKAP9_uc003uli.2_Missense_Mutation_p.G285S	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	672	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AGATAATTTAGGCATTCACTA	0.308			T	BRAF	papillary thyroid								46	44					0	0	1	0	0
SAMD9L	219285	broad.mit.edu	37	7	92761054	92761054	+	Nonsense_Mutation	SNP	G	A	A	rs4729075		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:92761054G>A	uc003umh.1	-	5	5447	c.4231C>T	c.(4231-4233)CGA>TGA	p.R1411*	SAMD9L_uc003umj.1_Nonsense_Mutation_p.R1411*|SAMD9L_uc003umi.1_Nonsense_Mutation_p.R1411*|SAMD9L_uc010lfb.1_Nonsense_Mutation_p.R1411*|SAMD9L_uc003umk.1_Nonsense_Mutation_p.R1411*|SAMD9L_uc010lfc.1_Nonsense_Mutation_p.R1411*|SAMD9L_uc010lfd.1_Nonsense_Mutation_p.R1411*|SAMD9L_uc011khx.1_3'UTR	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	1411										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AAGACCTCTCGGAGTTGTTTT	0.398													139	130					0	0	1	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94897979	94897979	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:94897979G>C	uc003unp.2	+	12	2999	c.2717G>C	c.(2716-2718)AGT>ACT	p.S906T	PPP1R9A_uc010lfj.2_Missense_Mutation_p.S928T|PPP1R9A_uc011kif.1_Missense_Mutation_p.S906T|PPP1R9A_uc003unq.2_Missense_Mutation_p.S906T|PPP1R9A_uc011kig.1_Missense_Mutation_p.S906T|PPP1R9A_uc003unr.2_5'UTR	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	906	Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			CTGTATGATAGTGTTAGTTCC	0.488										HNSCC(28;0.073)			22	59					0	0	1	0	0
LMTK2	22853	broad.mit.edu	37	7	97823814	97823814	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:97823814C>A	uc003upd.1	+	11	4330	c.4037C>A	c.(4036-4038)CCC>CAC	p.P1346H		NM_014916	NP_055731	Q8IWU2	LMTK2_HUMAN	lemur tyrosine kinase 2 precursor	1346					early endosome to late endosome transport|endocytic recycling|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation|receptor recycling|transferrin transport	early endosome|Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|recycling endosome	ATP binding|myosin VI binding|protein phosphatase inhibitor activity|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(9)|stomach(3)|pancreas(2)|large_intestine(1)|breast(1)	16	all_cancers(62;3.23e-09)|all_epithelial(64;7.65e-10)|Lung NSC(181;0.00902)|all_lung(186;0.0104)|Esophageal squamous(72;0.0125)					GACCCACTGCCCGAGGACTGG	0.542													41	98					2.43468e-25	2.48354e-25	1	1	0
TRRAP	8295	broad.mit.edu	37	7	98524852	98524852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:98524852C>T	uc003upp.2	+	23	3247	c.3038C>T	c.(3037-3039)CCA>CTA	p.P1013L	TRRAP_uc011kis.1_Missense_Mutation_p.P1013L|TRRAP_uc003upr.2_Missense_Mutation_p.P705L	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1013					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CAGGACACTCCAGCCCGGAAG	0.537													31	103					0	0	1	0	0
TRRAP	8295	broad.mit.edu	37	7	98533273	98533273	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:98533273C>T	uc003upp.2	+	28	4295	c.4086C>T	c.(4084-4086)CTC>CTT	p.L1362L	TRRAP_uc011kis.1_Silent_p.L1362L|TRRAP_uc003upr.2_Silent_p.L1054L	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	1362					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			TTCCGTCACTCGTACCTTTAC	0.378													26	23					0	0	1	0	0
CNPY4	245812	broad.mit.edu	37	7	99719914	99719914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:99719914G>A	uc003uto.2	+	2	254	c.151G>A	c.(151-153)GAA>AAA	p.E51K	TAF6_uc003uti.2_5'Flank|TAF6_uc003utk.2_5'Flank|TAF6_uc011kji.1_5'Flank|TAF6_uc003utj.2_5'Flank|TAF6_uc003utl.2_5'Flank|TAF6_uc003utm.2_5'Flank|TAF6_uc003utn.1_5'Flank	NM_152755	NP_689968	Q8N129	CNPY4_HUMAN	canopy 4 homolog precursor	51						extracellular region					0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCTACAGGCGGAACTGAGTCG	0.567													45	117					0	0	1	0	0
EPHB4	2050	broad.mit.edu	37	7	100405193	100405193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:100405193C>T	uc003uwn.1	-	13	2619	c.2128G>A	c.(2128-2130)GGA>AGA	p.G710R	EPHB4_uc003uwm.1_Missense_Mutation_p.G617R|EPHB4_uc010lhj.1_Missense_Mutation_p.G710R	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	710	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					GTGAACTGTCCGTCGTTTAGC	0.557													29	113					0	0	1	0	0
EPHB4	2050	broad.mit.edu	37	7	100410732	100410732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:100410732C>T	uc003uwn.1	-	11	2346	c.1855G>A	c.(1855-1857)GAG>AAG	p.E619K	EPHB4_uc003uwm.1_Missense_Mutation_p.E526K|EPHB4_uc010lhj.1_Missense_Mutation_p.E619K	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	619	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					CCAATCACCTCTTCAATCTTG	0.557													43	119					0	0	1	0	0
ACHE	43	broad.mit.edu	37	7	100491034	100491034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:100491034C>T	uc003uxd.2	-	1	976	c.820G>A	c.(820-822)GAG>AAG	p.E274K	ACHE_uc003uxe.2_Missense_Mutation_p.E274K|ACHE_uc003uxf.2_Missense_Mutation_p.E274K|ACHE_uc003uxg.2_Missense_Mutation_p.E274K|ACHE_uc003uxh.2_Missense_Mutation_p.E274K|ACHE_uc003uxi.2_Missense_Mutation_p.E274K|ACHE_uc003uxj.1_Missense_Mutation_p.E393K	NM_000665	NP_000656	P22303	ACES_HUMAN	acetylcholinesterase isoform E4-E6 precursor	274					acetylcholine catabolic process in synaptic cleft|amyloid precursor protein metabolic process|cell adhesion|cell proliferation|choline metabolic process|DNA replication|muscle organ development|neurotransmitter biosynthetic process|osteoblast development|positive regulation of protein secretion|regulation of axonogenesis|regulation of dendrite morphogenesis|response to wounding|synapse assembly	anchored to membrane|axon|basal lamina|cell junction|cell surface|dendrite|endoplasmic reticulum lumen|extracellular space|Golgi apparatus|neuromuscular junction|nucleus|perinuclear region of cytoplasm|postsynaptic membrane|presynaptic membrane|synaptic cleft	acetylcholine binding|acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|collagen binding|laminin-1 binding|protein homodimerization activity|serine hydrolase activity			skin(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Ambenonium(DB01122)|Atropine(DB00572)|Choline(DB00122)|Decamethonium(DB01245)|Demecarium bromide(DB00944)|Donepezil(DB00843)|Edrophonium(DB01010)|Ephedrine(DB01364)|Galantamine(DB00674)|Gallamine Triethiodide(DB00483)|Isoflurophate(DB00677)|Neostigmine(DB01400)|Physostigmine(DB00981)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Tacrine(DB00382)|Tubocurarine(DB01199)	CGACGGGCCTCTCCCATGCCC	0.706													17	30					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100681713	100681713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:100681713C>T	uc003uxp.1	+	3	7069	c.7016C>T	c.(7015-7017)CCA>CTA	p.P2339L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2339	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|37.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GGAAACACTCCATTAACACGT	0.478													157	467					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100685951	100685951	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:100685951A>G	uc003uxp.1	+	3	11307	c.11254A>G	c.(11254-11256)AGC>GGC	p.S3752G	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3752	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CATGGAAATAAGCACCCTTGG	0.478													83	274					0	0	1	0	0
PLOD3	8985	broad.mit.edu	37	7	100855890	100855891	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:100855890_100855891GG>AA	uc003uyd.2	-	9	1381_1382	c.925_926CC>TT	c.(925-927)CCG>TTG	p.P309L	PLOD3_uc010lhs.2_5'UTR	NM_001084	NP_001075	O60568	PLOD3_HUMAN	procollagen-lysine, 2-oxoglutarate 5-dioxygenase	309					protein modification process	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein binding			ovary(1)|skin(1)	2	Lung NSC(181;0.168)|all_lung(186;0.215)				Succinic acid(DB00139)|Vitamin C(DB00126)	GGGCAGAAACGGAGTAGGCTGT	0.619													25	75					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101671377	101671377	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:101671377G>A	uc003uyx.3	+	3	180	c.142_splice	c.e3-1	p.D48_splice	CUX1_uc003uys.3_Splice_Site_p.D59_splice|CUX1_uc003uyt.2_Splice_Site_p.D59_splice|CUX1_uc011kkn.1_Splice_Site_p.D22_splice|CUX1_uc003uyw.2_Splice_Site_p.D59_splice|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Splice_Site_p.D59_splice	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a						negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						TCCTGCTCCAGGATTTGCGCA	0.502													26	58					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101740678	101740678	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:101740678C>T	uc003uyx.3	+	5	341	c.303C>T	c.(301-303)CTC>CTT	p.L101L	CUX1_uc003uys.3_Silent_p.L112L|CUX1_uc003uyt.2_Silent_p.L112L|CUX1_uc011kkn.1_Silent_p.L75L|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Silent_p.L96L|CUX1_uc003uyu.2_Silent_p.L112L	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	101	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GACAGCAACTCCAGCTCAAAG	0.507													39	101					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101842130	101842130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:101842130G>A	uc003uyx.3	+	16	1981	c.1943G>A	c.(1942-1944)CGA>CAA	p.R648Q	CUX1_uc003uys.3_Missense_Mutation_p.R659Q|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	648					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GTACCGAAACGAAGAAATGGG	0.453													31	99					0	0	1	0	0
CUX1	1523	broad.mit.edu	37	7	101892268	101892268	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:101892268C>T	uc003uyx.3	+	24	4502	c.4464C>T	c.(4462-4464)ATC>ATT	p.I1488I	CUX1_uc003uys.3_Silent_p.I1499I|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	1488					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						ACAGCATCATCCACCGCCTGG	0.711													9	18					0	0	1	0	0
NAPEPLD	222236	broad.mit.edu	37	7	102760137	102760137	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:102760137C>T	uc003vbc.2	-	3	1156	c.828G>A	c.(826-828)TGG>TGA	p.W276*	NAPEPLD_uc003vbd.2_Nonsense_Mutation_p.W276*|NAPEPLD_uc011klj.1_Nonsense_Mutation_p.W349*|NAPEPLD_uc003vbe.2_RNA	NM_198990	NP_945341	Q6IQ20	NAPEP_HUMAN	N-acyl phosphatidylethanolamine phospholipase D	276					phospholipid catabolic process	membrane	metal ion binding			skin(1)	1						AAAATCGATTCCAAGGCCCCA	0.458													23	93					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103123409	103123409	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:103123409C>T	uc003vca.2	-	63	10351	c.10191G>A	c.(10189-10191)CGG>CGA	p.R3397R	RELN_uc010liz.2_Silent_p.R3397R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3397					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTCCTTTCATCCGTGCCTCCC	0.448													57	77					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103155810	103155810	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:103155810G>A	uc003vca.2	-	50	8101	c.7941C>T	c.(7939-7941)GGC>GGT	p.G2647G	RELN_uc010liz.2_Silent_p.G2647G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2647					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TCTGATCCAGGCCGTCATGTC	0.532													6	33					0	0	1	0	0
RELN	5649	broad.mit.edu	37	7	103234330	103234330	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:103234330C>T	uc003vca.2	-	27	3872	c.3712_splice	c.e27-1	p.N1238_splice	RELN_uc010liz.2_Splice_Site_p.N1238_splice	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a						axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CATAAAAGTTCTAATAGAAAC	0.343													9	31					0	0	1	0	0
PRKAR2B	5577	broad.mit.edu	37	7	106710743	106710743	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:106710743T>C	uc003vdx.2	+	2	500	c.325T>C	c.(325-327)TTC>CTC	p.F109L		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	109	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						AATAAACCGATTCACAAGGCG	0.308													51	40					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107706266	107706266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:107706266G>A	uc010ljo.1	-	21	2861	c.2777C>T	c.(2776-2778)TCC>TTC	p.S926F	LAMB4_uc003vey.2_Missense_Mutation_p.S926F|LAMB4_uc010ljp.1_5'Flank	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	926	Laminin EGF-like 9.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CTGATAACAGGAATGGGCAAA	0.423													117	102					0	0	1	0	0
LRRN3	54674	broad.mit.edu	37	7	110764291	110764291	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:110764291C>T	uc003vft.3	+	4	2509	c.1463C>T	c.(1462-1464)CCC>CTC	p.P488L	IMMP2L_uc003vfq.1_Intron|IMMP2L_uc010ljr.1_Intron|IMMP2L_uc003vfr.2_Intron|LRRN3_uc003vfu.3_Missense_Mutation_p.P488L|LRRN3_uc003vfs.3_Missense_Mutation_p.P488L	NM_001099660	NP_001093130	Q9H3W5	LRRN3_HUMAN	leucine rich repeat neuronal 3 precursor	488	Extracellular (Potential).|Ig-like C2-type.					integral to membrane				skin(3)|ovary(2)|pancreas(2)|central_nervous_system(1)	8				UCEC - Uterine corpus endometrioid carcinoma (4;0.245)|LUSC - Lung squamous cell carcinoma(290;0.0715)|Lung(3;0.0864)|STAD - Stomach adenocarcinoma(3;0.125)		GGCGTAACTCCCAAAGAAGGG	0.403													21	56					0	0	1	0	0
DOCK4	9732	broad.mit.edu	37	7	111368395	111368395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:111368395C>T	uc003vfx.2	-	52	6105	c.5836G>A	c.(5836-5838)GGG>AGG	p.G1946R	DOCK4_uc011kml.1_Missense_Mutation_p.G827R|DOCK4_uc011kmm.1_Missense_Mutation_p.G815R|DOCK4_uc003vfw.2_Missense_Mutation_p.G1358R|DOCK4_uc003vfy.2_Missense_Mutation_p.G1991R|DOCK4_uc003vfv.2_Missense_Mutation_p.G259R	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1946	Pro-rich.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				CTCCGGGCCCCATTCTCCAGG	0.667													19	34					0	0	1	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113558485	113558485	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:113558485G>A	uc010ljy.1	-	1	598	c.567C>T	c.(565-567)TCC>TCT	p.S189S		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	189	CBM21.				glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CAATCTTAAAGGAGAACTGGT	0.328													22	53					0	0	1	0	0
ST7	7982	broad.mit.edu	37	7	116810933	116810933	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:116810933C>T	uc003vin.2	+	10	1195	c.981C>T	c.(979-981)CCC>CCT	p.P327P	ST7_uc011knl.1_Silent_p.P304P|ST7_uc003vio.2_Silent_p.P304P|ST7_uc003viq.2_Silent_p.P281P|ST7_uc011knm.1_Silent_p.P284P|ST7_uc003vir.2_Silent_p.P252P|ST7_uc011knn.1_Silent_p.P275P|ST7_uc003vix.1_Silent_p.P140P	NM_021908	NP_068708	Q9NRC1	ST7_HUMAN	suppression of tumorigenicity 7 isoform b	327						integral to membrane	binding			central_nervous_system(1)|skin(1)	2	all_cancers(3;3.88e-07)|all_epithelial(6;3.42e-07)|Lung NSC(10;0.00072)|all_lung(10;0.000847)		STAD - Stomach adenocarcinoma(10;0.000512)	LUSC - Lung squamous cell carcinoma(290;0.133)		AGGAGTTCCCCCTTCTGAGTA	0.308													47	51					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117175447	117175447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:117175447G>A	uc003vjd.2	+	6	857	c.725G>A	c.(724-726)AGA>AAA	p.R242K	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	242	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GGGCTAGGGAGAATGATGATG	0.428									Cystic_Fibrosis				28	76					0	0	1	0	0
KCND2	3751	broad.mit.edu	37	7	120385852	120385852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:120385852G>A	uc003vjj.1	+	5	2451	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	496	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GTTTGTGGACGAACAAGTCTT	0.388													27	65					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121624121	121624121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:121624121C>T	uc003vjy.2	+	8	1273	c.878C>T	c.(877-879)TCT>TTT	p.S293F	PTPRZ1_uc003vjz.2_Missense_Mutation_p.S293F	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	293	Extracellular (Potential).|Alpha-carbonic anhydrase.				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TACAAGTTCTCTAGACAGGTG	0.353													65	69					0	0	1	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121652372	121652372	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:121652372C>T	uc003vjy.2	+	12	3667	c.3272C>T	c.(3271-3273)TCC>TTC	p.S1091F	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	1091	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						ACCTCTGTTTCCATTTCTAGC	0.388													31	77					0	0	1	0	0
HYAL4	23553	broad.mit.edu	37	7	123508577	123508577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:123508577G>A	uc003vlc.2	+	3	888	c.250G>A	c.(250-252)GGG>AGG	p.G84R	HYAL4_uc011knz.1_Missense_Mutation_p.G84R	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	84	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						CAAGGCCAGGGGGCAAAATGT	0.408													18	68					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123593843	123593843	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:123593843C>T	uc003vld.2	+	4	621	c.219C>T	c.(217-219)TTC>TTT	p.F73F	SPAM1_uc003vle.2_Silent_p.F73F|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Silent_p.F73F|SPAM1_uc010lku.2_Silent_p.F73F	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	73					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TGAGCCTCTTCTCTTTCATAG	0.433													11	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	124116564	124116564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:124116564G>A	uc011kod.1	+	1	140	c.140G>A	c.(139-141)CGA>CAA	p.R47Q		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		CTACCAGGACGAAGACCCAAT	0.468													73	206					0	0	1	0	0
GPR37	2861	broad.mit.edu	37	7	124386994	124386994	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:124386994C>A	uc003vli.2	-	2	2078	c.1427G>T	c.(1426-1428)TGT>TTT	p.C476F		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	476	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						CCCTCGGGTACAGGCTTTCTC	0.438													43	96					1.86633e-21	1.9005e-21	1	1	0
GPR37	2861	broad.mit.edu	37	7	124404253	124404253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:124404253C>T	uc003vli.2	-	1	1429	c.778G>A	c.(778-780)GGA>AGA	p.G260R		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	260	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GCGTAGGCTCCATAGGACTCC	0.597													26	65					0	0	1	0	0
POT1	25913	broad.mit.edu	37	7	124503423	124503423	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:124503423C>A	uc003vlm.2	-	8	1128	c.527G>T	c.(526-528)GGA>GTA	p.G176V	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.G45V|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	176					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						AAATGATGCTCCGTCCACTTC	0.383													55	76					1.80625e-27	1.84698e-27	1	1	0
GRM8	2918	broad.mit.edu	37	7	126173127	126173127	+	Missense_Mutation	SNP	G	C	C	rs147639816		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:126173127G>C	uc003vlr.2	-	8	2620	c.2309C>G	c.(2308-2310)ACG>AGG	p.T770R	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.T770R|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	770	Cytoplasmic (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	GACACCTCTCGTTTTAATGGC	0.413										HNSCC(24;0.065)			47	30					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173209	126173209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:126173209C>T	uc003vlr.2	-	8	2538	c.2227G>A	c.(2227-2229)GAC>AAC	p.D743N	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.D743N|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	743	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TCAGAAATGTCACACTTGAGC	0.468										HNSCC(24;0.065)			12	53					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126544086	126544086	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:126544086G>A	uc003vlr.2	-	4	1269	c.958C>T	c.(958-960)CAG>TAG	p.Q320*	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Nonsense_Mutation_p.Q320*|GRM8_uc010lkz.1_RNA|GRM8_uc003vlu.1_Nonsense_Mutation_p.Q41*	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	320	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TCCTCTTGCTGATAGACAGGT	0.423										HNSCC(24;0.065)			39	87					0	0	1	0	0
SND1	27044	broad.mit.edu	37	7	127724845	127724845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:127724845C>T	uc003vmi.2	+	19	2406	c.2180C>T	c.(2179-2181)TCC>TTC	p.S727F	SND1_uc010lle.2_Missense_Mutation_p.S380F	NM_014390	NP_055205	Q7KZF4	SND1_HUMAN	staphylococcal nuclease domain containing 1	727					gene silencing by RNA|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	melanosome|nucleus|RNA-induced silencing complex	nuclease activity|nucleic acid binding|protein binding|transcription cofactor activity			ovary(2)|central_nervous_system(1)	3						GTAGAGGGCTCCTATGCCCCC	0.542													17	67					0	0	1	0	0
FAM71F1	84691	broad.mit.edu	37	7	128357012	128357012	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:128357012G>A	uc003vno.1	+	2	448	c.395G>A	c.(394-396)TGG>TAG	p.W132*	FAM71F1_uc010llo.1_Nonsense_Mutation_p.W33*|FAM71F1_uc011koq.1_Missense_Mutation_p.M56I|FAM71F1_uc003vnm.1_RNA|FAM71F1_uc003vnn.1_Missense_Mutation_p.M53I|FAM71F1_uc010llp.1_RNA|FAM71F1_uc003vnp.1_Nonsense_Mutation_p.W132*	NM_032599	NP_115988	Q96KD3	F71F1_HUMAN	testes development-related NYD-SP18	132										skin(1)	1						AACCAGACATGGAACAGACCA	0.577													21	55					0	0	1	0	0
FLNC	2318	broad.mit.edu	37	7	128493622	128493622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:128493622C>T	uc003vnz.3	+	38	6517	c.6308C>T	c.(6307-6309)ACC>ATC	p.T2103I	FLNC_uc003voa.3_Missense_Mutation_p.T2070I	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2103	Filamin 19.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TACTGCCCCACCGAGCCCGGC	0.582													22	86					0	0	1	0	0
SMO	6608	broad.mit.edu	37	7	128850319	128850319	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:128850319A>G	uc003vor.2	+	9	1862	c.1582A>G	c.(1582-1584)ACT>GCT	p.T528A	SMO_uc003vos.2_Missense_Mutation_p.T203A	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	528	Helical; Name=7; (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						CATGTTTGGAACTGGCATCGC	0.612			Mis		skin basal cell 						OREG0018305	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	86	106					0	0	1	0	0
MIR182	406958	broad.mit.edu	37	7	129410252	129410252	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:129410252G>A	hsa-mir-182|MI0000272	-			c.81G>A			uc011kpb.1_RNA																	0						CCCATAGTTGGCAAGTCTAGA	0.632													19	63					0	0	1	0	0
PODXL	5420	broad.mit.edu	37	7	131195982	131195982	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:131195982T>C	uc003vqw.3	-	2	569	c.311A>G	c.(310-312)AAC>AGC	p.N104S	PODXL_uc003vqx.3_Missense_Mutation_p.N104S	NM_001018111	NP_001018121	O00592	PODXL_HUMAN	podocalyxin-like isoform 1 precursor	104	Thr-rich.|Extracellular (Potential).				cell adhesion|epithelial tube formation|negative regulation of cell-cell adhesion|positive regulation of cell migration|positive regulation of cell-cell adhesion mediated by integrin|regulation of microvillus assembly	actin cytoskeleton|apical plasma membrane|centrosome|filopodium|integral to plasma membrane|lamellipodium|membrane raft|microvillus membrane|nucleolus|ruffle				breast(2)|pancreas(1)	3	Melanoma(18;0.162)					CACGGTAGTGTTGACTGGGCC	0.577													66	198					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131859576	131859576	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:131859576G>A	uc003vra.3	-	21	4207	c.3978C>T	c.(3976-3978)TTC>TTT	p.F1326F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1326	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CAATTCCTGGGAACAGCACCC	0.473													57	188					0	0	1	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866180	131866180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:131866180C>T	uc003vra.3	-	18	3681	c.3452G>A	c.(3451-3453)GGA>GAA	p.G1151E		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1151	IPT/TIG 4.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CTCCAGGATTCCTGAGGGACC	0.577													71	215					0	0	1	0	0
AKR1D1	6718	broad.mit.edu	37	7	137773514	137773515	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:137773514_137773515GG>AA	uc003vtz.2	+	2	330	c.261_splice	c.e2+1	p.K87_splice	AKR1D1_uc011kqb.1_Splice_Site_p.K87_splice|AKR1D1_uc011kqc.1_Splice_Site|AKR1D1_uc011kqd.1_Intron|AKR1D1_uc011kqe.1_Splice_Site_p.K87_splice|AKR1D1_uc011kqf.1_Splice_Site_p.K87_splice|AKR1D1_uc010lmy.1_5'Flank	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1						androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						ACTGTGGAAAGGTGAGATCTTG	0.465													8	6					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138522824	138522824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:138522824G>A	uc011kql.1	-	20	5729	c.5680C>T	c.(5680-5682)CCT>TCT	p.P1894S	KIAA1549_uc011kqi.1_Missense_Mutation_p.P662S|KIAA1549_uc003vuk.3_Missense_Mutation_p.P1828S|KIAA1549_uc011kqj.1_Missense_Mutation_p.P1878S|KIAA1549_uc011kqk.1_Missense_Mutation_p.P678S	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1894						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TTCCCGGAAGGAGCTGAGGGC	0.602			O	BRAF	pilocytic astrocytoma								4	6					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138601622	138601622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:138601622G>A	uc011kql.1	-	2	2799	c.2750C>T	c.(2749-2751)CCC>CTC	p.P917L	KIAA1549_uc003vuk.3_Missense_Mutation_p.P867L|KIAA1549_uc011kqj.1_Missense_Mutation_p.P917L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	917						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						GGATGGCAGGGGAGGAGCAGC	0.602			O	BRAF	pilocytic astrocytoma								17	33					0	0	1	0	0
KIAA1549	57670	broad.mit.edu	37	7	138603675	138603675	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:138603675G>A	uc011kql.1	-	2	746	c.697C>T	c.(697-699)CGG>TGG	p.R233W	KIAA1549_uc003vuk.3_Missense_Mutation_p.R183W|KIAA1549_uc011kqj.1_Missense_Mutation_p.R233W	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	233						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						AAAGCTGACCGAAAGGTGTGG	0.493			O	BRAF	pilocytic astrocytoma								41	191					0	0	1	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138761036	138761036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:138761036G>A	uc003vun.2	-	6	2081	c.1693C>T	c.(1693-1695)CAC>TAC	p.H565Y	ZC3HAV1_uc003vuo.2_Missense_Mutation_p.H26Y|ZC3HAV1_uc003vup.2_Missense_Mutation_p.H565Y	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	565					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						ACTTACAGGTGGATTCCGGGG	0.468													47	133					0	0	1	0	0
UBN2	254048	broad.mit.edu	37	7	138957149	138957149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:138957149G>A	uc011kqr.1	+	9	1678	c.1678G>A	c.(1678-1680)GAG>AAG	p.E560K	UBN2_uc003vuv.2_Missense_Mutation_p.E283K	NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	560										ovary(1)|skin(1)	2						TAAATACCAGGAGGACTGCCA	0.363													119	137					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141799435	141799435	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:141799435G>A	uc003vwy.2	+	44	5138	c.5084G>A	c.(5083-5085)GGA>GAA	p.G1695E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1695	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AATGCAAGAGGAGAGTGGAAG	0.532													24	88					0	0	1	0	0
LOC100124692	100124692	broad.mit.edu	37	7	141896609	141896609	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:141896609G>A	uc003vxa.2	+	13		c.1545G>A				NR_003717				Homo sapiens cDNA FLJ16351 fis, clone TESTI2039060, moderately similar to Maltase-glucoamylase, intestinal.												0						AACAACATCGGGACAAGGGTG	0.438													16	16					0	0	1	0	0
TRYX3	136541	broad.mit.edu	37	7	141955414	141955414	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:141955414G>A	uc003vxb.2	-	2	440	c.120C>T	c.(118-120)CCC>CCT	p.P40P	TRYX3_uc003vxc.3_Silent_p.P40P	NM_001001317	NP_001001317	Q8IYP2	PRS58_HUMAN	trypsin X3 precursor	40	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0	Melanoma(164;0.0272)					CTCCAGCGCAGGGCAAGTAGT	0.483													30	98					0	0	1	0	0
TRY6	154754	broad.mit.edu	37	7	142480031	142480031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:142480031G>A	uc011ksq.1	+	2	246	c.163G>A	c.(163-165)GAA>AAA	p.E55K	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						CCTCATCAGCGAACAGTGGGT	0.577													29	239					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142510502	142510502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:142510502G>A	uc003wbp.2	-	2	216	c.104C>T	c.(103-105)CCG>CTG	p.P35L						SubName: Full=V_segment translation product; Flags: Fragment;																		CAGAGAGAGCGGGCTGCCCAC	0.572													9	17					0	0	1	0	0
C7orf34	135927	broad.mit.edu	37	7	142637478	142637478	+	Missense_Mutation	SNP	C	T	T	rs143475597	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:142637478C>T	uc003wca.2	+	2	289	c.248C>T	c.(247-249)TCC>TTC	p.S83F		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	58						extracellular region					0	Melanoma(164;0.059)					TTTGTGGCCTCCTCAGTGGGT	0.552													56	67					0	0	1	0	0
KEL	3792	broad.mit.edu	37	7	142649704	142649704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:142649704C>T	uc003wcb.2	-	10	1305	c.1095G>A	c.(1093-1095)ATG>ATA	p.M365I		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	365	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GCCCTAAGATCATGTGGCTCT	0.527													40	32					0	0	1	0	0
FAM115C	285966	broad.mit.edu	37	7	143421544	143421544	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:143421544G>T	uc003wdf.2	+	7	2342	c.2259G>T	c.(2257-2259)TGG>TGT	p.W753C	FAM115C_uc003wdg.2_Missense_Mutation_p.W472C|FAM115C_uc011ktk.1_Missense_Mutation_p.W753C|FAM115C_uc003wdh.2_Missense_Mutation_p.W753C|FAM115C_uc011ktm.1_Missense_Mutation_p.W753C|uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|FAM115C_uc011ktt.1_Missense_Mutation_p.W649C|FAM115C_uc003wdi.1_Missense_Mutation_p.W472C	NM_001130025	NP_001123497	A6NFQ2	F115C_HUMAN	hypothetical protein LOC285966 isoform A	753											0						GGGGTGTGTGGGGCCCCATCC	0.567													3	41					0.115264	0.115421	1	1	0
OR2F1	26211	broad.mit.edu	37	7	143657298	143657298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:143657298C>T	uc003wds.1	+	1	279	c.235C>T	c.(235-237)CCT>TCT	p.P79S		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					AAGTGTAGTCCCTCAGCTGCT	0.502													119	337					0	0	1	0	0
OR2F1	26211	broad.mit.edu	37	7	143657580	143657580	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:143657580T>A	uc003wds.1	+	1	561	c.517T>A	c.(517-519)TTT>ATT	p.F173I		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CAGAAACAAGTTTATTGATCA	0.507													69	60					0	0	1	0	0
OR2A5	393046	broad.mit.edu	37	7	143747577	143747578	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:143747577_143747578GG>AA	uc011ktw.1	+	1	83_84	c.83_84GG>AA	c.(82-84)GGG>GAA	p.G28E		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CTCCTCTCTGGGCTTTTCTCCC	0.51													39	137					0	0	1	0	0
TPK1	27010	broad.mit.edu	37	7	144150751	144150751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:144150751C>T	uc003weq.2	-	9	722	c.619G>A	c.(619-621)GAT>AAT	p.D207N	TPK1_uc003weo.2_Missense_Mutation_p.D153N|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Missense_Mutation_p.D158N|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	207					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	GCAAGCACATCATTTGCTGTA	0.403													23	72					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146471374	146471374	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:146471374G>A	uc003weu.1	+	2	625	c.109G>A	c.(109-111)GAG>AAG	p.E37K		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	37	F5/8 type C.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAAATGTGATGAGCCACTTGT	0.443										HNSCC(39;0.1)			10	43					0	0	1	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147926759	147926759	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:147926759A>G	uc003weu.1	+	20	3785	c.3269A>G	c.(3268-3270)AAC>AGC	p.N1090S		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1090	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATTCGATACAACCTGGGTGGC	0.458										HNSCC(39;0.1)			36	47					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149515762	149515762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:149515762C>T	uc010lpk.2	+	84	11663	c.11663C>T	c.(11662-11664)TCC>TTC	p.S3888F		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	3888	TSP type-1 16.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCATGGTCCTCCTGGTCCCCC	0.682													6	33					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149519172	149519172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:149519172G>A	uc010lpk.2	+	91	12976	c.12976G>A	c.(12976-12978)GGC>AGC	p.G4326S	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_RNA|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4326	TSP type-1 21.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGCGGCCCGGGCCTGGCCTC	0.721													6	27					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174477	150174477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:150174477G>A	uc003whj.2	+	5	1937	c.1607G>A	c.(1606-1608)CGA>CAA	p.R536Q		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	536						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CAGCTGGGACGATTCACTGAA	0.502													44	47					0	0	1	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269346	150269346	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:150269346A>C	uc003whl.2	+	3	270	c.188A>C	c.(187-189)AAA>ACA	p.K63T	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Missense_Mutation_p.K77T	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	63							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ACTGCAGCAAAATCCATTACC	0.463													23	64					0	0	1	0	0
ABP1	26	broad.mit.edu	37	7	150553945	150553945	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:150553945C>T	uc003why.1	+	3	4605	c.387C>T	c.(385-387)TCC>TCT	p.S129S	ABP1_uc003whz.1_Silent_p.S129S|ABP1_uc003wia.1_Silent_p.S129S	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	129					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	GAGCACTGTCCCCCAGGCCTG	0.632													79	78					0	0	1	0	0
ATG9B	285973	broad.mit.edu	37	7	150718296	150718296	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:150718296C>T	uc011kvc.1	-	5	1018	c.942G>A	c.(940-942)AGG>AGA	p.R314R	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	314	Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCAGGGCCTCCCTGTAAAACA	0.617													54	143					0	0	1	0	0
ATG9B	285973	broad.mit.edu	37	7	150720281	150720281	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:150720281G>A	uc011kvc.1	-	4	748	c.672C>T	c.(670-672)TTC>TTT	p.F224F	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	224	Helical; (Potential).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGTGACAATGAAAATAAATT	0.567													183	176					0	0	1	0	0
ABCB8	11194	broad.mit.edu	37	7	150733220	150733220	+	Silent	SNP	C	T	T	rs148169229		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:150733220C>T	uc003wil.3	+	9	1218	c.1125C>T	c.(1123-1125)ATC>ATT	p.I375I	ABCB8_uc003wii.2_Silent_p.I395I|ABCB8_uc003wij.3_Silent_p.I358I|ABCB8_uc010lpw.1_Missense_Mutation_p.R259C|ABCB8_uc010lpx.2_Silent_p.I358I|ABCB8_uc011kvd.1_Silent_p.I270I|ABCB8_uc003wim.3_Silent_p.I153I|ABCB8_uc003wik.3_Silent_p.I358I	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	375	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCCGCGGCATCGCCTTGTTCC	0.652													10	33					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151884415	151884415	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:151884415T>C	uc003wla.2	-	33	5159	c.4940A>G	c.(4939-4941)GAA>GGA	p.E1647G	MLL3_uc003wkz.2_Missense_Mutation_p.E708G	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1647					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGTTGCCATTTCACCCAGAGC	0.438			N		medulloblastoma								43	120					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151962193	151962193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:151962193C>T	uc003wla.2	-	8	1333	c.1114G>A	c.(1114-1116)GAT>AAT	p.D372N		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	372	PHD-type 1.|RING-type.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ACCGCTATATCCAGGCACATT	0.453			N		medulloblastoma								35	619					0	0	1	0	0
PTPRN2	5799	broad.mit.edu	37	7	157931188	157931188	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:157931188G>A	uc003wno.2	-	7	1051	c.930C>T	c.(928-930)CTC>CTT	p.L310L	PTPRN2_uc003wnp.2_Silent_p.L293L|PTPRN2_uc003wnq.2_Silent_p.L310L|PTPRN2_uc003wnr.2_Silent_p.L272L|PTPRN2_uc011kwa.1_Silent_p.L333L	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	310	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GGTCCTTCAGGAGGGTATGAA	0.617													80	49					0	0	1	0	0
DLGAP2	9228	broad.mit.edu	37	8	1496882	1496882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:1496882G>A	uc003wpl.2	+	2	120	c.23G>A	c.(22-24)CGG>CAG	p.R8Q	DLGAP2_uc003wpm.2_Missense_Mutation_p.R8Q	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	87					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		TCCGGAAGTCGGACCCAGCCG	0.697													16	8					0	0	1	0	0
MYOM2	9172	broad.mit.edu	37	8	2044089	2044089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:2044089G>A	uc003wpx.3	+	18	2266	c.2128G>A	c.(2128-2130)GTC>ATC	p.V710I	MYOM2_uc011kwi.1_Missense_Mutation_p.V135I	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	710					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CCTTGCAGCCGTCCCGTCCCA	0.617													118	134					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	3265652	3265652	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:3265652T>A	uc011kwk.1	-	14	2233	c.1843A>T	c.(1843-1845)ATT>TTT	p.I615F	CSMD1_uc011kwj.1_Missense_Mutation_p.I7F	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	615	Extracellular (Potential).|CUB 4.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCCGAGATAATCAACCAGACA	0.408													19	24					0	0	1	0	0
FLJ10661	286042	broad.mit.edu	37	8	8093775	8093775	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:8093775G>A	uc011kwt.1	+	6		c.830G>A			FLJ10661_uc010lrq.2_Intron|FLJ10661_uc003wsf.3_RNA	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						ACGTAGTGACGGTCCATCAGC	0.562													6	26					0	0	1	0	0
TNKS	8658	broad.mit.edu	37	8	9623825	9623825	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:9623825C>T	uc003wss.2	+	25	3635	c.3630C>T	c.(3628-3630)GCC>GCT	p.A1210A	TNKS_uc011kww.1_Silent_p.A973A	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	1210	PARP catalytic.				mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		TGTTTGGGGCCGGGATTTATT	0.408													47	76					0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10396000	10396000	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:10396000G>A	uc003wta.2	+	5	771	c.756G>A	c.(754-756)GGG>GGA	p.G252G	uc010lru.2_Intron|PRSS55_uc003wtb.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	252	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						ACAGTGGGGGGCCTCTGGTCT	0.577													24	65					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10467864	10467864	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:10467864C>T	uc003wtc.2	-	4	3973	c.3744G>A	c.(3742-3744)GGG>GGA	p.G1248G		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1248					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TTTCCAGATCCCCTGGGCTCT	0.552													30	60					0	0	1	0	0
RP1L1	94137	broad.mit.edu	37	8	10480253	10480253	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:10480253C>T	uc003wtc.2	-	2	688	c.459G>A	c.(457-459)AGG>AGA	p.R153R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	153					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCAGCAGTATCCTCCGGGGGG	0.577													54	75					0	0	1	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447196	17447196	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:17447196T>C	uc003wxr.2	+	2	336	c.275T>C	c.(274-276)GTA>GCA	p.V92A		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	92	Ig-like C2-type 1.					extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		GGGCAAACTGTAGAGCTTCGA	0.483													31	81					0	0	1	0	0
PDGFRL	5157	broad.mit.edu	37	8	17500139	17500139	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:17500139G>A	uc003wxr.2	+	6	1018	c.957G>A	c.(955-957)ACG>ACA	p.T319T		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	319	Ig-like C2-type 2.					extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		GGCCTGTGACGATCCAAGACA	0.498													20	32					0	0	1	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19362977	19362977	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:19362977G>A	uc011kyn.1	-	4	1433	c.369C>T	c.(367-369)TTC>TTT	p.F123F	CSGALNACT1_uc011kyo.1_Silent_p.F123F|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Silent_p.F122F|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	123	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		GCGAGTGCAGGAAGGCCAGGA	0.592													41	83					0	0	1	0	0
ATP6V1B2	526	broad.mit.edu	37	8	20072455	20072455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:20072455C>T	uc003wzp.2	+	10	1268	c.1054C>T	c.(1054-1056)CCT>TCT	p.P352S		NM_001693	NP_001684	P21281	VATB2_HUMAN	vacuolar H+ATPase B2	352					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|endomembrane system|Golgi apparatus|melanosome|plasma membrane|proton-transporting V-type ATPase, V1 domain	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0				Colorectal(74;0.0535)|COAD - Colon adenocarcinoma(73;0.211)		TACTCAAATCCCTATTCTAAC	0.418													50	92					0	0	1	0	0
HR	55806	broad.mit.edu	37	8	21977325	21977325	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:21977325G>A	uc003xas.2	-	14	3590	c.2925C>T	c.(2923-2925)CTC>CTT	p.L975L	HR_uc003xat.2_Silent_p.L975L	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	975	JmjC.						DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		GGCCCGGTGGGAGGTAGGAAG	0.627													37	62					0	0	1	0	0
HR	55806	broad.mit.edu	37	8	21978591	21978591	+	Missense_Mutation	SNP	G	A	A	rs140534514	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:21978591G>A	uc003xas.2	-	10	3019	c.2354C>T	c.(2353-2355)CCG>CTG	p.P785L	HR_uc003xat.2_Missense_Mutation_p.P785L	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	785							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		GGGCAGGGCCGGAGTGACGGG	0.662													35	64					0	0	1	0	0
REEP4	80346	broad.mit.edu	37	8	21996458	21996458	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:21996458G>A	uc003xau.1	-	6	987	c.534C>T	c.(532-534)TCC>TCT	p.S178S	REEP4_uc010ltt.1_Intron	NM_025232	NP_079508	Q9H6H4	REEP4_HUMAN	receptor accessory protein 4	178						integral to membrane				skin(1)	1				Colorectal(74;0.00187)|COAD - Colon adenocarcinoma(73;0.061)|READ - Rectum adenocarcinoma(644;0.0993)		GCCTCCGGTGGGACACCTGGT	0.662													16	16					0	0	1	0	0
SORBS3	10174	broad.mit.edu	37	8	22424682	22424682	+	Nonsense_Mutation	SNP	T	G	G	rs148389325		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:22424682T>G	uc003xbv.2	+	16	1639	c.1299T>G	c.(1297-1299)TAT>TAG	p.Y433*	SORBS3_uc003xbw.3_Nonsense_Mutation_p.Y91*	NM_005775	NP_005766	O60504	VINEX_HUMAN	sorbin and SH3 domain containing 3 isoform 1	433	SH3 1.|Binds to vinculin.				muscle contraction|positive regulation of stress fiber assembly	cytoskeleton|cytosol|nucleus	protein binding|structural constituent of cytoskeleton|vinculin binding				0		Prostate(55;0.0421)|Breast(100;0.102)		BRCA - Breast invasive adenocarcinoma(99;0.00566)|Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		CTGCTAATTATGTGGAGGTGA	0.562													46	78					0	0	1	0	0
SORBS3	10174	broad.mit.edu	37	8	22429332	22429332	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:22429332C>T	uc003xbv.2	+	19	2185	c.1845C>T	c.(1843-1845)ACC>ACT	p.T615T	SORBS3_uc003xbw.3_Silent_p.T273T	NM_005775	NP_005766	O60504	VINEX_HUMAN	sorbin and SH3 domain containing 3 isoform 1	615	SH3 3.|Binds to SOS.				muscle contraction|positive regulation of stress fiber assembly	cytoskeleton|cytosol|nucleus	protein binding|structural constituent of cytoskeleton|vinculin binding				0		Prostate(55;0.0421)|Breast(100;0.102)		BRCA - Breast invasive adenocarcinoma(99;0.00566)|Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		TACACTGGACCCCGTGAGTAC	0.607													24	71					0	0	1	0	0
SLC25A37	51312	broad.mit.edu	37	8	23423648	23423648	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:23423648C>T	uc003xdo.2	+	2	391	c.238C>T	c.(238-240)CCC>TCC	p.P80S	SLC25A37_uc003xdn.1_Missense_Mutation_p.P80S|SLC25A37_uc003xdp.2_RNA|SLC25A37_uc010ltz.2_RNA|SLC25A37_uc003xdq.2_5'Flank	NM_016612	NP_057696	Q9NYZ2	MFRN1_HUMAN	solute carrier family 25, member 37	80	Solcar 1.				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Prostate(55;0.114)		Colorectal(74;0.0198)|COAD - Colon adenocarcinoma(73;0.0751)		GAGTCCAGATCCCAAAGCCCA	0.478													25	28					0	0	1	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24250828	24250828	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:24250828C>T	uc003xdz.2	+	3	481	c.261C>T	c.(259-261)ATC>ATT	p.I87I	ADAMDEC1_uc010lub.2_Silent_p.I8I|ADAMDEC1_uc011lab.1_Silent_p.I8I	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	87					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GAGAAGAAATCATTCTCTCCC	0.333													19	67					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24326289	24326289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:24326289G>A	uc003xeb.2	+	7	702	c.589G>A	c.(589-591)GAT>AAT	p.D197N		NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	197	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GGGCATCCATGATGAAAAGTA	0.313													16	60					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24326292	24326292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:24326292G>A	uc003xeb.2	+	7	705	c.592G>A	c.(592-594)GAA>AAA	p.E198K		NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	198	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CATCCATGATGAAAAGTATGT	0.308													17	59					0	0	1	0	0
ADRA1A	148	broad.mit.edu	37	8	26627876	26627876	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:26627876C>T	uc003xfh.1	-	2	1627	c.1191G>A	c.(1189-1191)TGG>TGA	p.W397*	ADRA1A_uc003xfc.1_Nonsense_Mutation_p.W397*|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Nonsense_Mutation_p.W397*|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron|ADRA1A_uc003xfg.1_Nonsense_Mutation_p.W397*	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	397	Cytoplasmic (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	AGAAAAATTTCCATTCACAAA	0.527													41	110					0	0	1	0	0
PTK2B	2185	broad.mit.edu	37	8	27290974	27290974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:27290974C>T	uc003xfn.1	+	16	1818	c.1010C>T	c.(1009-1011)TCC>TTC	p.S337F	PTK2B_uc003xfo.1_Missense_Mutation_p.S337F|PTK2B_uc003xfp.1_Missense_Mutation_p.S337F|PTK2B_uc003xfq.1_Missense_Mutation_p.S337F|PTK2B_uc010luq.1_Missense_Mutation_p.S108F|PTK2B_uc003xfr.1_Missense_Mutation_p.S83F	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	337	FERM.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		AAAACCTCATCCCTAGCAGAG	0.592													41	69					0	0	1	0	0
C8orf80	389643	broad.mit.edu	37	8	27886810	27886810	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:27886810C>T	uc003xgm.3	-	17	2270	c.2127G>A	c.(2125-2127)AGG>AGA	p.R709R		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	709						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		GGTGCTGCATCCTTTCCTGGG	0.572													8	14					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	30209761	30209761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:30209761C>T	uc003xhz.2	+	1	243	c.238C>T	c.(238-240)CCT>TCT	p.P80S						SubName: Full=Class IVb beta tubulin;																		TCGCTCAGGTCCTTTTGGCCA	0.522													37	113					0	0	1	0	0
WRN	7486	broad.mit.edu	37	8	30999098	30999098	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:30999098T>C	uc003xio.3	+	25	3908	c.3120T>C	c.(3118-3120)ATT>ATC	p.I1040I	WRN_uc010lvk.2_Silent_p.I507I	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	1040					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TTATGAAGATTTGCGCCCTTA	0.408			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				19	63					0	0	1	0	0
TACC1	6867	broad.mit.edu	37	8	38700836	38700836	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:38700836G>A	uc010lwp.2	+	11	2530	c.2151G>A	c.(2149-2151)CAG>CAA	p.Q717Q	TACC1_uc003xma.2_Silent_p.Q155Q|TACC1_uc003xlz.2_Silent_p.Q522Q|TACC1_uc003xmc.3_Silent_p.Q521Q|TACC1_uc011lbz.1_Silent_p.Q704Q|TACC1_uc003xmb.3_Silent_p.Q643Q|TACC1_uc003xmf.3_Silent_p.Q307Q|TACC1_uc011lca.1_Silent_p.Q700Q|TACC1_uc011lcb.1_Silent_p.Q493Q|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Silent_p.Q534Q|TACC1_uc010lwq.2_Silent_p.Q533Q	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	717	|Interaction with CH-TOG.				cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			AATGTGCTCAGGATTACTTAG	0.378													69	182					0	0	1	0	0
IDO1	3620	broad.mit.edu	37	8	39782806	39782806	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:39782806G>A	uc003xnm.2	+	9	886	c.772G>A	c.(772-774)GAG>AAG	p.E258K	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	258					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	AGACCCAAAGGAGTTTGCAGG	0.502													13	24					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41525829	41525829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:41525829C>T	uc003xok.2	-	39	5434	c.5350G>A	c.(5350-5352)GAG>AAG	p.E1784K	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.E938K|ANK1_uc003xoi.2_Missense_Mutation_p.E1784K|ANK1_uc003xoj.2_Missense_Mutation_p.E1784K|ANK1_uc003xol.2_Missense_Mutation_p.E1622K|ANK1_uc003xom.2_Missense_Mutation_p.E1825K	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1784	55 kDa regulatory domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGCACCTGCTCTTCTTGGCCT	0.632													33	74					0	0	1	0	0
SGK196	84197	broad.mit.edu	37	8	42958731	42958731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:42958731C>T	uc003xpw.2	+	4	299	c.40C>T	c.(40-42)CCC>TCC	p.P14S		NM_032237	NP_115613	Q9H5K3	SG196_HUMAN	protein kinase-like protein SgK196	14						integral to membrane	ATP binding|protein kinase activity				0						AGGCCTCGCCCCCCGAGAGGT	0.542													48	95					0	0	1	0	0
SGK196	84197	broad.mit.edu	37	8	42977920	42977920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:42977920C>T	uc003xpw.2	+	5	1212	c.953C>T	c.(952-954)CCC>CTC	p.P318L		NM_032237	NP_115613	Q9H5K3	SG196_HUMAN	protein kinase-like protein SgK196	318	Protein kinase.					integral to membrane	ATP binding|protein kinase activity				0						AGCCAGACTCCCTCAGAAAGA	0.488													47	97					0	0	1	0	0
PXDNL	137902	broad.mit.edu	37	8	52321203	52321203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:52321203C>T	uc003xqu.3	-	17	3082	c.2981G>A	c.(2980-2982)GGA>GAA	p.G994E	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	994					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AACCGTGTTTCCCTCCCAGTG	0.637													3	8					0	0	1	0	0
ST18	9705	broad.mit.edu	37	8	53085020	53085020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:53085020C>T	uc003xqz.2	-	5	557	c.401G>A	c.(400-402)GGG>GAG	p.G134E	ST18_uc011ldq.1_5'UTR|ST18_uc011ldr.1_Missense_Mutation_p.G99E|ST18_uc011lds.1_Missense_Mutation_p.G39E|ST18_uc003xra.2_Missense_Mutation_p.G134E|ST18_uc003xrb.2_Missense_Mutation_p.G134E	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	134						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TTCAAATTTCCCCAAGTGCAT	0.388													25	50					0	0	1	0	0
SOX17	64321	broad.mit.edu	37	8	55370747	55370747	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:55370747C>A	uc003xsb.3	+	1	253	c.49C>A	c.(49-51)CAG>AAG	p.Q17K		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	17			Q -> QTQ (in VUR3).		angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			GAGCCAGACCCAGAGCGCGCT	0.746													3	8					1	1	1	1	0
SOX17	64321	broad.mit.edu	37	8	55372394	55372394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:55372394G>A	uc003xsb.3	+	2	1288	c.1084G>A	c.(1084-1086)GAA>AAA	p.E362K		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	362	Sox C-terminal.				angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			GGACCGCACGGAATTTGAACA	0.687													20	43					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55541881	55541881	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:55541881A>T	uc003xsd.1	+	4	5587	c.5439A>T	c.(5437-5439)GAA>GAT	p.E1813D	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1813					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AACCCCTTGAACTAAAATGCA	0.448													9	21					0	0	1	0	0
CYP7B1	9420	broad.mit.edu	37	8	65528502	65528502	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:65528502T>C	uc003xvj.2	-	3	800	c.596A>G	c.(595-597)AAA>AGA	p.K199R		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	199					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AACAATAACTTTTCCATATAT	0.328													16	36					0	0	1	0	0
VCPIP1	80124	broad.mit.edu	37	8	67576730	67576730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:67576730G>A	uc003xwn.2	-	1	2723	c.2464C>T	c.(2464-2466)CCT>TCT	p.P822S		NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	822					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			TCTTTAGGAGGAAACCCGTAT	0.388													61	87					0	0	1	0	0
COPS5	10987	broad.mit.edu	37	8	67958055	67958055	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:67958055T>C	uc003xxe.2	-	7	1243	c.912A>G	c.(910-912)ACA>ACG	p.T304T	COPS5_uc003xxd.2_Silent_p.T240T|COPS5_uc003xxf.2_Silent_p.T349T|COPS5_uc010lyu.1_RNA	NM_006837	NP_006828	Q92905	CSN5_HUMAN	COP9 signalosome subunit 5	304					cullin deneddylation|transcription from RNA polymerase II promoter	eukaryotic translation initiation factor 3 complex|signalosome	metal ion binding|metallopeptidase activity|protein binding|transcription coactivator activity|translation initiation factor activity			ovary(1)|skin(1)	2	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00389)|OV - Ovarian serous cystadenocarcinoma(28;0.00691)|all cancers(69;0.0205)|BRCA - Breast invasive adenocarcinoma(89;0.153)			ACCTGTCTCTTGTAGCTTTGG	0.398													30	72					0	0	1	0	0
SULF1	23213	broad.mit.edu	37	8	70539472	70539472	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:70539472C>T	uc010lza.1	+	16	2595	c.1878C>T	c.(1876-1878)ATC>ATT	p.I626I	SULF1_uc003xyd.2_Silent_p.I626I|SULF1_uc003xye.2_Silent_p.I626I|SULF1_uc003xyf.2_Silent_p.I626I|SULF1_uc003xyg.2_Silent_p.I626I|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_5'Flank	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	626					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			ATGACTCTATCCATTGTGAGA	0.388													18	58					0	0	1	0	0
Unknown	0	broad.mit.edu	37	8	73150386	73150386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:73150386C>T	uc010lzg.2	-	7	858	c.322G>A	c.(322-324)GGG>AGG	p.G108R						Homo sapiens cDNA, FLJ99767.																		CTGGCTTTCCCGTTATCCACA	0.403													21	14					0	0	1	0	0
KCNB2	9312	broad.mit.edu	37	8	73480250	73480250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:73480250G>A	uc003xzb.2	+	2	869	c.281G>A	c.(280-282)GGA>GAA	p.G94E		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	94	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CGGCATCCAGGAGCCTTCACT	0.478													44	60					0	0	1	0	0
TERF1	7013	broad.mit.edu	37	8	73921227	73921227	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:73921227G>A	uc003xzd.2	+	1	131	c.106G>A	c.(106-108)GAG>AAG	p.E36K	TERF1_uc003xzc.2_RNA|TERF1_uc003xze.2_Missense_Mutation_p.E36K	NM_017489	NP_059523	P54274	TERF1_HUMAN	telomeric repeat binding factor 1 isoform 1	36	Asp/Glu-rich (acidic).				age-dependent telomere shortening|cell division|G2/M transition of mitotic cell cycle|induction of apoptosis|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of telomere maintenance via semi-conservative replication|negative regulation of telomere maintenance via telomerase|positive regulation of microtubule polymerization|positive regulation of mitosis|positive regulation of mitotic cell cycle|protein homooligomerization|regulation of transcription, DNA-dependent|telomere maintenance via telomerase|telomere maintenance via telomerase|telomere maintenance via telomere shortening	chromosome, telomeric region|cytoplasm|nuclear telomere cap complex|nucleoplasm|nucleus|spindle	caspase activator activity|DNA bending activity|double-stranded telomeric DNA binding|identical protein binding|microtubule binding|protein heterodimerization activity|protein homodimerization activity|telomerase inhibitor activity|telomeric DNA binding			ovary(1)|lung(1)|skin(1)	3	Breast(64;0.218)		Epithelial(68;0.0984)			GAGAAACGACGAGGAGCAGTT	0.577													16	28					0	0	1	0	0
STAU2	27067	broad.mit.edu	37	8	74507457	74507457	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:74507457T>A	uc003xzm.2	-	11	1341	c.1105A>T	c.(1105-1107)ATG>TTG	p.M369L	STAU2_uc011lfg.1_Missense_Mutation_p.M197L|STAU2_uc003xzn.2_Missense_Mutation_p.M337L|STAU2_uc011lfh.1_Missense_Mutation_p.M265L|STAU2_uc003xzo.2_Missense_Mutation_p.M369L|STAU2_uc003xzp.2_Missense_Mutation_p.M337L|STAU2_uc011lfi.1_Missense_Mutation_p.M331L|STAU2_uc003xzq.2_Missense_Mutation_p.M149L|STAU2_uc010lzk.2_Missense_Mutation_p.M337L|STAU2_uc010lzl.1_Missense_Mutation_p.M197L	NM_014393	NP_055208	Q9NUL3	STAU2_HUMAN	staufen homolog 2 isoform e	369	DRBM 4.				transport	endoplasmic reticulum|microtubule|nucleolus	double-stranded RNA binding				0	Breast(64;0.0138)		Epithelial(68;0.026)|BRCA - Breast invasive adenocarcinoma(89;0.0483)|all cancers(69;0.0972)			TGTAACAGCATTGCTTCTGCA	0.333													30	79					0	0	1	0	0
JPH1	56704	broad.mit.edu	37	8	75171635	75171635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:75171635C>T	uc003yae.2	-	3	1283	c.1243G>A	c.(1243-1245)GAT>AAT	p.D415N	JPH1_uc003yaf.2_Missense_Mutation_p.D415N|JPH1_uc003yag.1_Missense_Mutation_p.D279N	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	415	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			TGGTAGAAATCAGGTGACAGC	0.562													58	56					0	0	1	0	0
CRISPLD1	83690	broad.mit.edu	37	8	75925135	75925135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:75925135C>T	uc003yan.2	+	4	763	c.388C>T	c.(388-390)CCG>TCG	p.P130S	CRISPLD1_uc011lfk.1_5'UTR|CRISPLD1_uc011lfl.1_5'UTR	NM_031461	NP_113649	Q9H336	CRLD1_HUMAN	cysteine-rich secretory protein LCCL domain	130						extracellular region				ovary(1)|central_nervous_system(1)	2	Breast(64;0.0799)		Epithelial(68;0.155)|BRCA - Breast invasive adenocarcinoma(89;0.161)			ATATAGGCCCCCGACGTTTCA	0.378													35	59					0	0	1	0	0
HNF4G	3174	broad.mit.edu	37	8	76471062	76471062	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:76471062A>T	uc003yaq.2	+	9	1042	c.772A>T	c.(772-774)AAA>TAA	p.K258*	HNF4G_uc003yar.2_Nonsense_Mutation_p.K295*	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	258					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			CGATCCAGTAAAAATTAAGAA	0.408													26	58					0	0	1	0	0
HNF4G	3174	broad.mit.edu	37	8	76472608	76472608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:76472608C>T	uc003yaq.2	+	10	1282	c.1012C>T	c.(1012-1014)CAT>TAT	p.H338Y	HNF4G_uc003yar.2_Missense_Mutation_p.H375Y	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	338					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			TCATCTCCATCATCCAATGCA	0.393													29	44					0	0	1	0	0
HNF4G	3174	broad.mit.edu	37	8	76472686	76472686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:76472686C>T	uc003yaq.2	+	10	1360	c.1090C>T	c.(1090-1092)CAT>TAT	p.H364Y	HNF4G_uc003yar.2_Missense_Mutation_p.H401Y	NM_004133	NP_004124	Q14541	HNF4G_HUMAN	hepatocyte nuclear factor 4, gamma	364					endocrine pancreas development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)	1	Breast(64;0.0448)		BRCA - Breast invasive adenocarcinoma(89;0.161)			AACACTGGTTCATGCAGACCA	0.373													16	50					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766603	77766603	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:77766603C>T	uc003yav.2	+	10	7698	c.7311C>T	c.(7309-7311)CTC>CTT	p.L2437L	ZFHX4_uc003yau.1_Silent_p.L2482L|ZFHX4_uc003yaw.1_Silent_p.L2437L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2437						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGACGTCTCTCCAGAACAGTC	0.473										HNSCC(33;0.089)			36	64					0	0	1	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766854	77766854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:77766854C>T	uc003yav.2	+	10	7949	c.7562C>T	c.(7561-7563)TCC>TTC	p.S2521F	ZFHX4_uc003yau.1_Missense_Mutation_p.S2566F|ZFHX4_uc003yaw.1_Missense_Mutation_p.S2521F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2521						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCCAGTTCCTCCCACACCACA	0.493										HNSCC(33;0.089)			19	67					0	0	1	0	0
PMP2	5375	broad.mit.edu	37	8	82357140	82357140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:82357140C>T	uc003ycb.1	-	2	256	c.158G>A	c.(157-159)CGA>CAA	p.R53Q	PMP2_uc010lzv.1_Intron	NM_002677	NP_002668	P02689	MYP2_HUMAN	peripheral myelin protein 2	53						cytoplasm	cholesterol binding|fatty acid binding|transporter activity				0			Epithelial(68;0.186)			ACTTTCAGTTCGTATAGTTAT	0.378													27	48					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87679272	87679272	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:87679272G>A	uc003ydx.2	-	6	779	c.733C>T	c.(733-735)CAA>TAA	p.Q245*	CNGB3_uc010maj.2_Nonsense_Mutation_p.Q107*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	245	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TCTGCGGTTTGATATGGGAAG	0.433													27	50					0	0	1	0	0
RUNX1T1	862	broad.mit.edu	37	8	93029589	93029589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:93029589G>A	uc003yfd.2	-	2	175	c.91C>T	c.(91-93)CGT>TGT	p.R31C	RUNX1T1_uc003yfc.1_Missense_Mutation_p.R4C|RUNX1T1_uc003yfe.1_5'UTR|RUNX1T1_uc010mao.2_Missense_Mutation_p.R4C|RUNX1T1_uc011lgi.1_Missense_Mutation_p.R42C|RUNX1T1_uc003yfh.1_5'UTR|RUNX1T1_uc003yfb.1_5'UTR|RUNX1T1_uc003yff.1_5'UTR|RUNX1T1_uc003yfg.1_5'UTR	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	31		Breakpoint for translocation to form AML1-MTG8 in AML-M2.			generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			TTCTCAGTACGATCTGGAGGA	0.448													43	35					0	0	1	0	0
KIAA1429	25962	broad.mit.edu	37	8	95523649	95523649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:95523649G>A	uc003ygo.1	-	13	3167	c.3154C>T	c.(3154-3156)CGT>TGT	p.R1052C	KIAA1429_uc003ygp.2_Missense_Mutation_p.R1052C|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1052					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			CTATCCAAACGACCTGAGAGG	0.403													17	48					0	0	1	0	0
ESRP1	54845	broad.mit.edu	37	8	95680196	95680196	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:95680196C>T	uc003ygq.3	+	10	1134	c.951C>T	c.(949-951)GCC>GCT	p.A317A	ESRP1_uc003ygr.3_Silent_p.A317A|ESRP1_uc003ygs.3_Silent_p.A317A|ESRP1_uc003ygt.3_Silent_p.A317A|ESRP1_uc003ygu.3_Silent_p.A317A|ESRP1_uc003ygv.2_Silent_p.A157A|ESRP1_uc003ygw.2_Silent_p.A157A	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	317					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						ATGAGGTAGCCCAGTTTCTCT	0.453													25	32					0	0	1	0	0
POP1	10940	broad.mit.edu	37	8	99152404	99152404	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:99152404C>T	uc003yij.3	+	10	1561	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F	POP1_uc011lgv.1_Silent_p.F487F|POP1_uc003yik.2_Silent_p.F487F	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	487					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			AAGCCATTTTCGAGTTGTTGG	0.512													16	23					0	0	1	0	0
POP1	10940	broad.mit.edu	37	8	99168299	99168299	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:99168299C>T	uc003yij.3	+	15	2179	c.2079C>T	c.(2077-2079)CCC>CCT	p.P693P	POP1_uc011lgv.1_Silent_p.P693P|POP1_uc003yik.2_Silent_p.P693P	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	693					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			CAAAACGGCCCAACTACGTTA	0.433													45	151					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100587942	100587942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:100587942C>T	uc003yiv.2	+	32	5192	c.5081C>T	c.(5080-5082)TCT>TTT	p.S1694F	VPS13B_uc003yiw.2_Missense_Mutation_p.S1669F	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1694					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			ACAGATTTTTCTGTCCGAATA	0.348													23	48					0	0	1	0	0
VPS13B	157680	broad.mit.edu	37	8	100789163	100789163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:100789163C>T	uc003yiv.2	+	41	7594	c.7483C>T	c.(7483-7485)CAC>TAC	p.H2495Y	VPS13B_uc003yiw.2_Missense_Mutation_p.H2470Y	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2495					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TCTTTGTCATCACCTTGACCA	0.418													83	135					0	0	1	0	0
RGS22	26166	broad.mit.edu	37	8	100990250	100990250	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:100990250C>T	uc003yjb.1	-	23	3609	c.3414G>A	c.(3412-3414)AGG>AGA	p.R1138R	RGS22_uc003yja.1_Silent_p.R957R|RGS22_uc003yjc.1_Silent_p.R1126R	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1138	RGS 2.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			TTAAATTCTTCCTAAACTCAC	0.299													14	27					0	0	1	0	0
GRHL2	79977	broad.mit.edu	37	8	102644468	102644468	+	Silent	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:102644468T>C	uc010mbu.2	+	11	1690	c.1360T>C	c.(1360-1362)TTG>CTG	p.L454L		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	454						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			TGATGGGAAGTTGGCTGCCAT	0.428											OREG0018909	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	72	109					0	0	1	0	0
GRHL2	79977	broad.mit.edu	37	8	102656453	102656453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:102656453G>A	uc010mbu.2	+	13	1942	c.1612G>A	c.(1612-1614)GTG>ATG	p.V538M		NM_024915	NP_079191	Q6ISB3	GRHL2_HUMAN	transcription factor CP2-like 3	538						cytoplasm|nucleus	DNA binding			ovary(2)|skin(1)	3	all_cancers(14;4.39e-08)|all_epithelial(15;4.09e-10)|Lung NSC(17;7.11e-06)|all_lung(17;1.44e-05)		Epithelial(11;5.81e-09)|all cancers(13;3.81e-07)|OV - Ovarian serous cystadenocarcinoma(57;0.000213)			GACAAAGCGAGGTATCTCTCC	0.562													14	14					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103293623	103293623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:103293623C>T	uc003ykr.1	-	41	5854	c.5821G>A	c.(5821-5823)GTT>ATT	p.V1941I	UBR5_uc003yks.1_Missense_Mutation_p.V1941I	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1941					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AATGAGCAAACATCCAAAACT	0.398													56	77					0	0	1	0	0
UBR5	51366	broad.mit.edu	37	8	103323718	103323718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:103323718G>A	uc003ykr.1	-	20	2458	c.2425C>T	c.(2425-2427)CCC>TCC	p.P809S	UBR5_uc003yks.1_Missense_Mutation_p.P809S	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	809					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AGAATAATGGGAGATTCCTAT	0.358													24	61					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	104898085	104898085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:104898085G>A	uc003yls.2	+	2	833	c.592G>A	c.(592-594)GGA>AGA	p.G198R	RIMS2_uc003ylp.2_Missense_Mutation_p.G420R|RIMS2_uc003ylw.2_Missense_Mutation_p.G228R|RIMS2_uc003ylq.2_Missense_Mutation_p.G228R|RIMS2_uc003ylr.2_Missense_Mutation_p.G228R	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	451					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			AGAGGCTCAGGGACCAAGTTC	0.478										HNSCC(12;0.0054)			25	31					0	0	1	0	0
RIMS2	9699	broad.mit.edu	37	8	105001602	105001602	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:105001602G>T	uc003yls.2	+	15	2572	c.2331G>T	c.(2329-2331)ATG>ATT	p.M777I	RIMS2_uc003ylp.2_Missense_Mutation_p.M999I|RIMS2_uc003ylw.2_Missense_Mutation_p.M791I|RIMS2_uc003ylq.2_Missense_Mutation_p.M791I|RIMS2_uc003ylr.2_Missense_Mutation_p.M838I	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1061					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TTAGCCGAATGGACAGACATC	0.373										HNSCC(12;0.0054)			53	126					1.3268e-25	1.35437e-25	1	1	0
LRP12	29967	broad.mit.edu	37	8	105509256	105509256	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:105509256G>A	uc003yma.2	-	5	1619	c.1524C>T	c.(1522-1524)CTC>CTT	p.L508L	LRP12_uc003ymb.2_Silent_p.L489L|LRP12_uc003ylz.2_5'Flank	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	508	Helical; (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			ATGCTATGACGAGTAACAGGC	0.458													17	48					0	0	1	0	0
OXR1	55074	broad.mit.edu	37	8	107705000	107705000	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:107705000C>T	uc011lht.1	+	6	672	c.573C>T	c.(571-573)TTC>TTT	p.F191F	OXR1_uc003ymf.2_Silent_p.F190F|OXR1_uc011lhu.1_Silent_p.F183F|OXR1_uc010mcg.2_Intron|OXR1_uc003ymg.1_Silent_p.F123F|OXR1_uc003ymi.1_Silent_p.F102F	NM_018002	NP_060472	Q8N573	OXR1_HUMAN	oxidation resistance 1 isoform 1	191					cell wall macromolecule catabolic process|response to oxidative stress	mitochondrion					0			OV - Ovarian serous cystadenocarcinoma(57;1.81e-09)			CATCTACTTTCACTGGTATTC	0.323													29	33					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108276579	108276579	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:108276579C>G	uc003ymn.2	-	8	1674	c.1206G>C	c.(1204-1206)AGG>AGC	p.R402S	ANGPT1_uc011lhv.1_Missense_Mutation_p.R202S|ANGPT1_uc003ymo.2_Missense_Mutation_p.R401S	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	402	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			TTAAATACAACCTGAAGTCAA	0.383													25	37					0	0	1	0	0
ANGPT1	284	broad.mit.edu	37	8	108306214	108306214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:108306214G>A	uc003ymn.2	-	6	1456	c.988C>T	c.(988-990)CGT>TGT	p.R330C	ANGPT1_uc011lhv.1_Missense_Mutation_p.R130C|ANGPT1_uc003ymo.2_Missense_Mutation_p.R329C|ANGPT1_uc003ymp.3_Missense_Mutation_p.R129C	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	330	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CCATCTTCACGATGTTGTATT	0.338													80	100					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110476485	110476485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:110476485C>T	uc003yne.2	+	49	7528	c.7424C>T	c.(7423-7425)CCA>CTA	p.P2475L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2475	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGGCGATATCCAATACATTGG	0.418										HNSCC(38;0.096)			20	18					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477466	110477466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:110477466C>T	uc003yne.2	+	49	8509	c.8405C>T	c.(8404-8406)TCA>TTA	p.S2802L		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2802	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTTGATGGCTCACTTACAGGT	0.308										HNSCC(38;0.096)			15	25					0	0	1	0	0
KCNV1	27012	broad.mit.edu	37	8	110980599	110980599	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:110980599G>A	uc003ynr.3	-	3	1563	c.1221C>T	c.(1219-1221)ATC>ATT	p.I407I	KCNV1_uc010mcw.2_Silent_p.I407I	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	407	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			TGAAGGCCACGATTTTGCCTG	0.473													40	96					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113293480	113293480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:113293480C>T	uc003ynu.2	-	59	9590	c.9431G>A	c.(9430-9432)GGA>GAA	p.G3144E	CSMD3_uc003yns.2_Missense_Mutation_p.G2346E|CSMD3_uc003ynt.2_Missense_Mutation_p.G3104E|CSMD3_uc011lhx.1_Missense_Mutation_p.G2975E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3144	Extracellular (Potential).|Sushi 23.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAGGATGTATCCCTCCATGCA	0.423										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			60	70					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113301614	113301614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:113301614C>T	uc003ynu.2	-	57	9287	c.9128G>A	c.(9127-9129)GGA>GAA	p.G3043E	CSMD3_uc003yns.2_Missense_Mutation_p.G2245E|CSMD3_uc003ynt.2_Missense_Mutation_p.G3003E|CSMD3_uc011lhx.1_Missense_Mutation_p.G2874E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3043	Sushi 21.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGGTTGTGATCCACTCCAATG	0.398										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			62	96					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	114186122	114186122	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:114186122T>A	uc003ynu.2	-	4	697	c.538A>T	c.(538-540)AAT>TAT	p.N180Y	CSMD3_uc003ynt.2_Missense_Mutation_p.N140Y|CSMD3_uc011lhx.1_Missense_Mutation_p.N180Y|CSMD3_uc010mcx.1_Missense_Mutation_p.N180Y	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	180	Extracellular (Potential).|Sushi 1.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACACCAGGATTTCCACAAGAG	0.383										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			49	53					0	0	1	0	0
C8orf85	441376	broad.mit.edu	37	8	117954903	117954904	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:117954903_117954904CC>TT	uc003yof.2	+	2	450_451	c.431_432CC>TT	c.(430-432)TCC>TTT	p.S144F		NM_001025357	NP_001020528	Q4LEZ3	AARD_HUMAN	alanine and arginine-rich domain-containing	144											0						ACATCAGACTCCCAAAGCCCAA	0.322													43	71					0	0	1	0	0
COL14A1	7373	broad.mit.edu	37	8	121301985	121301985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:121301985C>T	uc003yox.2	+	34	4481	c.4216C>T	c.(4216-4218)CCA>TCA	p.P1406S	COL14A1_uc003yoz.2_Missense_Mutation_p.P371S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1406	Nonhelical region (NC4).|TSP N-terminal.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			ATCAAGAGGACCAGGTGGAAA	0.428													72	53					0	0	1	0	0
MTBP	27085	broad.mit.edu	37	8	121530221	121530221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:121530221C>T	uc003ypc.1	+	19	2422	c.2377C>T	c.(2377-2379)CCA>TCA	p.P793S		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	793	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			TCCATTGGTTCCAATTCCTAG	0.388													40	46					0	0	1	0	0
ZHX2	22882	broad.mit.edu	37	8	123965211	123965211	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:123965211C>T	uc003ypk.1	+	3	2028	c.1461C>T	c.(1459-1461)TTC>TTT	p.F487F		NM_014943	NP_055758	Q9Y6X8	ZHX2_HUMAN	zinc fingers and homeoboxes 2	487	Required for interaction with NFYA.|Homeobox 2.					cytoplasm|nucleus|plasma membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2	Lung NSC(37;2e-09)|Ovarian(258;0.0205)|Hepatocellular(40;0.105)		STAD - Stomach adenocarcinoma(47;0.00527)			AGAAGTGGTTCAGTGACCACC	0.587													34	30					0	0	1	0	0
FAM91A1	157769	broad.mit.edu	37	8	124817556	124817556	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:124817556T>G	uc003yqv.2	+	19	1920	c.1859T>G	c.(1858-1860)TTT>TGT	p.F620C	FAM91A1_uc011lik.1_Missense_Mutation_p.F620C|FAM91A1_uc011lil.1_Missense_Mutation_p.F378C	NM_144963	NP_659400	Q658Y4	F91A1_HUMAN	hypothetical protein LOC157769	620										ovary(1)|central_nervous_system(1)	2	Lung NSC(37;8.76e-13)|Ovarian(258;0.00744)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00192)			CCATTTCCATTTGATGAAACA	0.338													6	32					0	0	1	0	0
FAM84B	157638	broad.mit.edu	37	8	127569212	127569212	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:127569212C>T	uc003yrz.1	-	2	707	c.423G>A	c.(421-423)CAG>CAA	p.Q141Q		NM_174911	NP_777571	Q96KN1	FA84B_HUMAN	family with sequence similarity 84, member B	141						cytoplasm|plasma membrane	protein binding				0	Ovarian(5;9.43e-05)|Esophageal squamous(12;0.0012)|Hepatocellular(40;0.128)|Myeloproliferative disorder(2;0.135)		STAD - Stomach adenocarcinoma(47;0.000556)|Colorectal(2;0.0102)|Lung(2;0.0136)|READ - Rectum adenocarcinoma(2;0.0723)			GGTGCACCACCTGGAAGTTAC	0.622													32	33					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130760939	130760939	+	Silent	SNP	G	A	A	rs116452429	by1000genomes	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:130760939G>A	uc003ysr.2	-	14	2217	c.1335C>T	c.(1333-1335)CCC>CCT	p.P445P		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	445						mitochondrion				ovary(2)|skin(1)	3						TGAGGGTGAAGGGAATGCTCC	0.527													33	37					0	0	1	0	0
GSDMC	56169	broad.mit.edu	37	8	130763803	130763803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:130763803C>T	uc003ysr.2	-	10	1810	c.928G>A	c.(928-930)GAA>AAA	p.E310K		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	310						mitochondrion				ovary(2)|skin(1)	3						CAGAAGGGTTCCTCTATTCTT	0.478													24	69					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131916288	131916288	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:131916288C>T	uc003ytd.3	-	7	1897	c.1641G>A	c.(1639-1641)GGG>GGA	p.G547G	ADCY8_uc010mds.2_Silent_p.G547G	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	547	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGTGAATCCTCCTGTGTGTAG	0.458										HNSCC(32;0.087)			51	147					0	0	1	0	0
KCNQ3	3786	broad.mit.edu	37	8	133182650	133182650	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:133182650T>A	uc003ytj.2	-	8	1391	c.1166A>T	c.(1165-1167)AAC>ATC	p.N389I	KCNQ3_uc010mdt.2_Missense_Mutation_p.N389I	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	389					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CCTGTTGGGGTTGGTAGCATA	0.517													23	64					0	0	1	0	0
ZFAT	57623	broad.mit.edu	37	8	135613971	135613971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:135613971G>A	uc003yup.2	-	6	2166	c.1991C>T	c.(1990-1992)TCA>TTA	p.S664L	ZFAT_uc003yun.2_Missense_Mutation_p.S652L|ZFAT_uc003yuo.2_Missense_Mutation_p.S652L|ZFAT_uc010meh.2_Missense_Mutation_p.S652L|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.S652L|ZFAT_uc010mej.2_Missense_Mutation_p.S602L|ZFAT_uc003yur.2_Missense_Mutation_p.S652L	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	664					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			GTCACCAGCTGAAAGCACAGC	0.597													22	47					0	0	1	0	0
FAM135B	51059	broad.mit.edu	37	8	139155319	139155319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:139155319C>T	uc003yuy.2	-	16	3745	c.3574G>A	c.(3574-3576)GAT>AAT	p.D1192N	FAM135B_uc003yux.2_Missense_Mutation_p.D1093N|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.D754N|FAM135B_uc003yvb.2_3'UTR	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1192										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AATAACCGATCCGTCATAGTA	0.458										HNSCC(54;0.14)			20	53					0	0	1	0	0
PTP4A3	11156	broad.mit.edu	37	8	142441072	142441072	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:142441072G>A	uc003ywg.1	+	5	784	c.450G>A	c.(448-450)GAG>GAA	p.E150E	PTP4A3_uc003ywh.1_Silent_p.E125E|PTP4A3_uc010met.1_Missense_Mutation_p.R64K	NM_032611	NP_116000	O75365	TP4A3_HUMAN	protein tyrosine phosphatase type IVA, member 3	150						early endosome|plasma membrane	identical protein binding|prenylated protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0	all_cancers(97;2.55e-15)|all_epithelial(106;1.39e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0474)			CCTACCTGGAGAAATACCGGC	0.597													46	49					0	0	1	0	0
BAI1	575	broad.mit.edu	37	8	143545880	143545880	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:143545880C>T	uc003ywm.2	+	1	504	c.321C>T	c.(319-321)TTC>TTT	p.F107F		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	107	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					TCGACTCCTTCCTCGAGTCCA	0.701													3	11					0	0	1	0	0
BAI1	575	broad.mit.edu	37	8	143623479	143623479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:143623479C>T	uc003ywm.2	+	27	4067	c.3884C>T	c.(3883-3885)CCC>CTC	p.P1295L		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1295	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCCCGCTATCCCGGCGGGCCC	0.642													19	46					0	0	1	0	0
LY6K	54742	broad.mit.edu	37	8	143784663	143784663	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:143784663G>A	uc011ljv.1	+	3	789	c.372G>A	c.(370-372)GAG>GAA	p.E124E	LY6K_uc011ljw.1_3'UTR|LY6K_uc011ljx.1_3'UTR	NM_017527	NP_059997	Q17RY6	LY6K_HUMAN	lymphocyte antigen 6 complex, locus K isoform 1	124	UPAR/Ly6.					anchored to membrane|cytoplasm|extracellular region|nucleolus|plasma membrane				central_nervous_system(1)	1	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GCAATTTAGAGGGGCCACCTA	0.532													64	71					0	0	1	0	0
SLURP1	57152	broad.mit.edu	37	8	143823794	143823794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:143823794G>A	uc003ywy.2	-	1	36	c.10C>T	c.(10-12)CGC>TGC	p.R4C		NM_020427	NP_065160	P55000	SLUR1_HUMAN	ARS component B precursor	4					cell activation|cell adhesion	extracellular space	cytokine activity				0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					ACAGCCCAGCGAGAGGCCATT	0.642													27	43					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144944101	144944101	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:144944101A>G	uc003zaa.1	-	1	3334	c.3321T>C	c.(3319-3321)ACT>ACC	p.T1107T		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1107						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GAAGGCCAGAAGTCTCATCCC	0.672													9	23					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144946454	144946454	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:144946454G>A	uc003zaa.1	-	1	981	c.968C>T	c.(967-969)GCT>GTT	p.A323V		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	323	Plectin 7.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GTGGGTGGCAGCCTGGGCCTC	0.662													38	72					0	0	1	0	0
EPPK1	83481	broad.mit.edu	37	8	144946492	144946492	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:144946492G>A	uc003zaa.1	-	1	943	c.930C>T	c.(928-930)CTC>CTT	p.L310L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	310	Plectin 6.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGCCCATTGGGAGCAGGTGCT	0.672													41	90					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144996174	144996174	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:144996174G>A	uc003zaf.1	-	32	8396	c.8226C>T	c.(8224-8226)CAC>CAT	p.H2742H	PLEC_uc003zab.1_Silent_p.H2605H|PLEC_uc003zac.1_Silent_p.H2609H|PLEC_uc003zad.2_Silent_p.H2605H|PLEC_uc003zae.1_Silent_p.H2573H|PLEC_uc003zag.1_Silent_p.H2583H|PLEC_uc003zah.2_Silent_p.H2591H|PLEC_uc003zaj.2_Silent_p.H2632H	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	2742	Central fibrous rod domain.|Potential.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						GCGCGGCCCGGTGCTGCTCCT	0.562													13	18					0	0	1	0	0
GRINA	2907	broad.mit.edu	37	8	145065438	145065438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:145065438C>T	uc003zan.1	+	2	213	c.47C>T	c.(46-48)CCC>CTC	p.P16L	GRINA_uc003zao.1_Missense_Mutation_p.P16L|GRINA_uc003zap.1_Missense_Mutation_p.P16L	NM_001009184	NP_001009184	Q7Z429	GRINA_HUMAN	glutamate receptor, ionotropic, N-methyl	16	Pro-rich.					integral to membrane				central_nervous_system(1)	1	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			AACTATCCTCCCCCCAACCCT	0.627													32	46					0	0	1	0	0
FBXL6	26233	broad.mit.edu	37	8	145580011	145580011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:145580011G>A	uc003zcb.2	-	7	1199	c.1174C>T	c.(1174-1176)CGT>TGT	p.R392C	C8ORFK29_uc011llb.1_5'Flank|C8ORFK29_uc010mfw.2_5'Flank|C8ORFK29_uc003zby.3_5'Flank|FBXL6_uc003zbz.2_Missense_Mutation_p.R119C|FBXL6_uc003zca.2_Missense_Mutation_p.R386C|FBXL6_uc010mfx.2_Missense_Mutation_p.R153C|GPR172A_uc003zcc.1_5'Flank|GPR172A_uc003zcd.1_5'Flank|GPR172A_uc003zce.1_5'Flank|GPR172A_uc010mfy.1_5'Flank|GPR172A_uc003zcf.1_5'Flank|GPR172A_uc011llc.1_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	F-box and leucine-rich repeat protein 6 isoform	392	LRR 7.				proteolysis		ubiquitin-protein ligase activity			ovary(1)|lung(1)	2	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GCACAGCCACGAAGATCCAGT	0.657													25	66					0	0	1	0	0
FBXL6	26233	broad.mit.edu	37	8	145580114	145580114	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:145580114G>A	uc003zcb.2	-	7	1096	c.1071C>T	c.(1069-1071)AGC>AGT	p.S357S	C8ORFK29_uc011llb.1_5'Flank|C8ORFK29_uc010mfw.2_5'Flank|C8ORFK29_uc003zby.3_5'Flank|FBXL6_uc003zbz.2_Silent_p.S84S|FBXL6_uc003zca.2_Silent_p.S351S|FBXL6_uc010mfx.2_Silent_p.S118S|GPR172A_uc003zcc.1_5'Flank|GPR172A_uc003zcd.1_5'Flank|GPR172A_uc003zce.1_5'Flank|GPR172A_uc010mfy.1_5'Flank|GPR172A_uc003zcf.1_5'Flank|GPR172A_uc011llc.1_5'Flank	NM_012162	NP_036294	Q8N531	FBXL6_HUMAN	F-box and leucine-rich repeat protein 6 isoform	357	LRR 6.				proteolysis		ubiquitin-protein ligase activity			ovary(1)|lung(1)	2	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GCTCCTCTAGGCTAGGGAAGC	0.642													21	58					0	0	1	0	0
ZNF517	340385	broad.mit.edu	37	8	146033325	146033325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:146033325G>A	uc003zed.1	+	5	1131	c.1024G>A	c.(1024-1026)GAG>AAG	p.E342K	ZNF517_uc010mgd.1_Missense_Mutation_p.E248K|ZNF517_uc003zee.1_RNA|ZNF517_uc011llm.1_Missense_Mutation_p.E248K|ZNF517_uc003zef.1_Intron	NM_213605	NP_998770	Q6ZMY9	ZN517_HUMAN	zinc finger protein 517	342					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Epithelial(56;5.47e-39)|OV - Ovarian serous cystadenocarcinoma(54;6.38e-39)|all cancers(56;5.47e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)			GCACGCGCAGGAGGGTGCCCA	0.761													4	3					0	0	1	0	0
ZNF16	7564	broad.mit.edu	37	8	146156159	146156159	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:146156159A>G	uc003zet.2	-	4	2201	c.2014T>C	c.(2014-2016)TTG>CTG	p.L672L	ZNF16_uc003zeu.2_Silent_p.L672L	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	672	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		TGTTTGATCAACTTTGATCGC	0.527													84	216					0	0	1	0	0
SMARCA2	6595	broad.mit.edu	37	9	2186140	2186140	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:2186140C>T	uc003zhc.2	+	32	4605	c.4506C>T	c.(4504-4506)GCC>GCT	p.A1502A	SMARCA2_uc003zhd.2_Silent_p.A1484A|SMARCA2_uc010mha.2_Silent_p.A1417A|SMARCA2_uc011llw.1_Silent_p.A188A|SMARCA2_uc003zhf.2_Silent_p.A166A|SMARCA2_uc011llx.1_Silent_p.A148A|SMARCA2_uc003zhe.2_Silent_p.A190A|SMARCA2_uc003zhg.2_Silent_p.A148A|SMARCA2_uc010mhb.2_Silent_p.A172A	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	1502					chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		TTAAGAGTGCCCGGCAGAAAA	0.338													19	105					0	0	1	0	0
KCNV2	169522	broad.mit.edu	37	9	2729610	2729610	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:2729610G>A	uc003zho.1	+	2	1735	c.1521G>A	c.(1519-1521)GAG>GAA	p.E507E		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	507	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		AGGCTTATGAGTATACCACCA	0.483													23	67					0	0	1	0	0
TPD52L3	89882	broad.mit.edu	37	9	6328916	6328916	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:6328916G>A	uc003zjw.2	+	1	542	c.321G>A	c.(319-321)AGG>AGA	p.R107R	TPD52L3_uc003zjv.2_Silent_p.R107R|TPD52L3_uc003zjx.1_Silent_p.R107R	NM_033516	NP_277051	Q96J77	TPD55_HUMAN	protein kinase NYD-SP25 isoform 1	107							protein binding				0		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0198)|Lung(218;0.1)		TCATCTGCAGGAAGCTTGGAG	0.507													39	87					0	0	1	0	0
PTPRD	5789	broad.mit.edu	37	9	8485939	8485939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:8485939C>T	uc003zkk.2	-	27	3589	c.2878G>A	c.(2878-2880)GAT>AAT	p.D960N	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Missense_Mutation_p.D951N|PTPRD_uc003zkm.2_Missense_Mutation_p.D947N|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	960	Fibronectin type-III 7.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATGTTGATATCCCTATAAAGA	0.468										TSP Lung(15;0.13)			42	115					0	0	1	0	0
TYRP1	7306	broad.mit.edu	37	9	12708132	12708132	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:12708132T>C	uc003zkv.3	+	7	1575	c.1397T>C	c.(1396-1398)ATT>ACT	p.I466T		NM_000550	NP_000541	P17643	TYRP1_HUMAN	tyrosinase-related protein 1 precursor	466	Lumenal, melanosome (Potential).				melanin biosynthetic process	clathrin-coated endocytic vesicle membrane|endosome membrane|integral to membrane|melanosome membrane	copper ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, another compound as one donor, and incorporation of one atom of oxygen|protein heterodimerization activity|protein homodimerization activity			lung(1)	1		all_cancers(3;3.1e-05)|all_lung(3;1.7e-06)|Lung NSC(3;2.09e-06)|all_epithelial(3;0.000695)|all_hematologic(3;0.0033)|Acute lymphoblastic leukemia(23;0.0744)		GBM - Glioblastoma multiforme(50;9.85e-06)		ACTTATGAAATTCAATGGCCA	0.388									Oculocutaneous_Albinism				34	31					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14770666	14770666	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:14770666C>T	uc003zlm.2	-	26	5586	c.4996G>A	c.(4996-4998)GAT>AAT	p.D1666N	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.D202N	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1666	CSPG 12.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ATGATCTGATCGTCCTCAGTG	0.458													36	28					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14789050	14789050	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:14789050C>T	uc003zlm.2	-	23	4634	c.4044G>A	c.(4042-4044)CTG>CTA	p.L1348L	FREM1_uc010mic.2_Intron	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1348	CSPG 9.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCAGCAAGTTCAGATCCACTT	0.517													10	11					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14824845	14824845	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:14824845C>T	uc003zlm.2	-	11	2617	c.2027G>A	c.(2026-2028)AGG>AAG	p.R676K	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	676	CSPG 4.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GACCAGCTCCCTGTCATATGA	0.418													7	6					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14851330	14851330	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:14851330G>A	uc003zlm.2	-	6	1694	c.1104C>T	c.(1102-1104)ATC>ATT	p.I368I	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	368	CSPG 1.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		GCTGATAGGCGATCTGCATGT	0.483													27	41					0	0	1	0	0
FREM1	158326	broad.mit.edu	37	9	14868827	14868827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:14868827G>A	uc003zlm.2	-	2	739	c.149C>T	c.(148-150)GCC>GTC	p.A50V	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	50					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TTTAGGGATGGCAAACTTCAG	0.547													4	12					0	0	1	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18892485	18892485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:18892485C>T	uc003zne.3	+	26	4869	c.4742C>T	c.(4741-4743)TCC>TTC	p.S1581F	ADAMTSL1_uc003znf.3_Missense_Mutation_p.S282F	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1581	TSP type-1 8.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		TCTGGGATCTCCACCCCTGTG	0.622													9	11					0	0	1	0	0
FAM154A	158297	broad.mit.edu	37	9	18941751	18941751	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:18941751A>T	uc003zni.1	-	3	583	c.305T>A	c.(304-306)CTC>CAC	p.L102H	FAM154A_uc010mip.1_Intron	NM_153707	NP_714918	Q8IYX7	F154A_HUMAN	hypothetical protein LOC158297	102										pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.53e-16)		ATACGTCGTGAGCAAATCCAT	0.478													31	111					0	0	1	0	0
SLC24A2	25769	broad.mit.edu	37	9	19573399	19573399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:19573399G>A	uc003zoa.1	-	6	1359	c.1297C>T	c.(1297-1299)CCT>TCT	p.P433S	SLC24A2_uc003zob.1_Missense_Mutation_p.P416S	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	433	Cytoplasmic (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		TTTTGTACAGGTTCTGAAGCA	0.378													17	98					0	0	1	0	0
SLC24A2	25769	broad.mit.edu	37	9	19786147	19786147	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:19786147G>A	uc003zoa.1	-	1	780	c.718C>T	c.(718-720)CGA>TGA	p.R240*	SLC24A2_uc003zob.1_Nonsense_Mutation_p.R240*	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	240	Cytoplasmic (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		GACACATCTCGAAAGAGCGGC	0.398													33	51					0	0	1	0	0
IFNA5	3442	broad.mit.edu	37	9	21304717	21304717	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:21304717T>C	uc011lnh.1	-	1	539	c.539A>G	c.(538-540)AAC>AGC	p.N180S		NM_002169	NP_002160	P01569	IFNA5_HUMAN	interferon, alpha 5 precursor	180					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding			ovary(1)	1				Lung(24;2.34e-24)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TTCTTGCAAGTTTGCTGATAA	0.403													123	174					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	22823403	22823403	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:22823403G>A	uc003zpq.1	+	6		c.1538G>A								Homo sapiens cDNA FLJ35282 fis, clone PROST2007328.																		ccctcccgaggaaatctcaac	0													5	19					0	0	1	0	0
TEK	7010	broad.mit.edu	37	9	27109596	27109596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:27109596C>T	uc003zqi.3	+	1	450	c.8C>T	c.(7-9)TCT>TTT	p.S3F	TEK_uc010mjc.1_Missense_Mutation_p.S3F|TEK_uc011lnn.1_Missense_Mutation_p.S3F|TEK_uc011lno.1_Missense_Mutation_p.S3F|TEK_uc011lnp.1_Missense_Mutation_p.S3F	NM_000459	NP_000450	Q02763	TIE2_HUMAN	TEK tyrosine kinase, endothelial precursor	3					angiogenesis|blood coagulation|cell-cell signaling|leukocyte migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase B signaling cascade|protein oligomerization|transmembrane receptor protein tyrosine kinase signaling pathway	apical plasma membrane|basolateral plasma membrane|cell surface|integral to plasma membrane|membrane raft|microvillus	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			ovary(3)|central_nervous_system(3)|breast(3)|lung(2)|kidney(1)	12		all_neural(11;7.57e-10)|Myeloproliferative disorder(762;0.0255)		Lung(218;4.08e-05)|LUSC - Lung squamous cell carcinoma(38;0.00027)		AGCATGGACTCTTTAGCCAGC	0.398													65	91					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32630148	32630148	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:32630148G>A	uc003zrg.1	-	1	5520	c.5430C>T	c.(5428-5430)CCC>CCT	p.P1810P		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1810					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GAAGCATGAAGGGTTGTTTGG	0.493													15	54					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32633223	32633223	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:32633223C>T	uc003zrg.1	-	1	2445	c.2355G>A	c.(2353-2355)CGG>CGA	p.R785R	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	785					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CCTGTCTTGTCCGAATGATCA	0.458													36	124					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32634247	32634247	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:32634247C>T	uc003zrg.1	-	1	1421	c.1331G>A	c.(1330-1332)GGG>GAG	p.G444E	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	444					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGGTTTTGTCCCTTTGTGTTT	0.478													52	188					0	0	1	0	0
DNAI1	27019	broad.mit.edu	37	9	34512395	34512395	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:34512395C>T	uc003zum.2	+	15	1655	c.1462C>T	c.(1462-1464)CCT>TCT	p.P488S		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	488					cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		CACGGAAGTTCCTGAGGGGTT	0.602									Kartagener_syndrome				9	35					0	0	1	0	0
ARID3C	138715	broad.mit.edu	37	9	34627714	34627714	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:34627714A>G	uc011lon.1	-	1	298	c.298T>C	c.(298-300)TAC>CAC	p.Y100H		NM_001017363	NP_001017363	A6NKF2	ARI3C_HUMAN	AT rich interactive domain 3C (BRIGHT- like)	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.175)		TGTTCCTCGTAGGTCCACTCG	0.522													29	44					0	0	1	0	0
KIAA1045	23349	broad.mit.edu	37	9	34977228	34977228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:34977228C>T	uc003zvq.2	+	6	1176	c.998C>T	c.(997-999)TCC>TTC	p.S333F	KIAA1045_uc003zvr.2_Missense_Mutation_p.S333F	NM_015297	NP_056112	Q9UPV7	K1045_HUMAN	hypothetical protein LOC23349	333							calcium ion binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00575)			GAGGCTCCTTCCTGCAGTGTC	0.642													20	85					0	0	1	0	0
OR2S2	56656	broad.mit.edu	37	9	35957189	35957189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:35957189C>T	uc011lpi.1	-	1	963	c.907G>A	c.(907-909)GAT>AAT	p.D303N		NM_019897	NP_063950	Q9NQN1	OR2S1_HUMAN	olfactory receptor, family 2, subfamily S,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00613)|STAD - Stomach adenocarcinoma(86;0.194)			GCCTTCACATCCTTGTTCCTC	0.507													28	105					0	0	1	0	0
CCIN	881	broad.mit.edu	37	9	36171241	36171241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:36171241C>T	uc003zzb.3	+	1	1853	c.1742C>T	c.(1741-1743)CCT>CTT	p.P581L		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	581					cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			GCCAAGCTACCTTGCAAGATT	0.448													27	33					0	0	1	0	0
FBXO10	26267	broad.mit.edu	37	9	37541212	37541213	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:37541212_37541213GT>AA	uc004aab.2	-	2	602_603	c.553_554AC>TT	c.(553-555)ACG>TTG	p.T185L	FBXO10_uc004aac.2_Missense_Mutation_p.T201L|FBXO10_uc004aad.2_Intron	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	185						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		CCAGGCTGGCGTGAAGACGAGG	0.554													25	115					0	0	1	0	0
PGM5P2	595135	broad.mit.edu	37	9	69112874	69112874	+	RNA	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:69112874C>A	uc004aff.3	-	6		c.1186G>T				NR_002836				Homo sapiens phosphoglucomutase 5 pseudogene 2, mRNA (cDNA clone IMAGE:4121651), with apparent retained intron.												0						ATACTCCTCCCAAACCCGCGG	0.517													22	44					9.80776e-20	9.97353e-20	1	1	0
PCSK5	5125	broad.mit.edu	37	9	78547299	78547299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:78547299G>A	uc004ajz.2	+	2	735	c.197G>A	c.(196-198)GGG>GAG	p.G66E	PCSK5_uc004ajy.2_Missense_Mutation_p.G66E|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	66					anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TTGCAGATAGGGGCCCTGAAG	0.413													30	17					0	0	1	0	0
Unknown	0	broad.mit.edu	37	9	78936462	78936462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:78936462G>A	uc004akc.1	+	3	404	c.184G>A	c.(184-186)GAA>AAA	p.E62K						Homo sapiens cDNA FLJ16215 fis, clone CTONG2025610, moderately similar to PC6B.																		AGTGTGCCAGGAAAACTGCCC	0.537													44	22					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320150	79320150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:79320150G>A	uc010mpk.2	-	8	7164	c.7040C>T	c.(7039-7041)GCC>GTC	p.A2347V	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2347					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ACCCCACGAGGCTTCAGATGA	0.463													95	51					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79320584	79320584	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:79320584A>G	uc010mpk.2	-	8	6730	c.6606T>C	c.(6604-6606)GGT>GGC	p.G2202G	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	2202					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ATACTTGTAAACCTGTACTGT	0.443													29	34					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321508	79321508	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:79321508G>A	uc010mpk.2	-	8	5806	c.5682C>T	c.(5680-5682)CCC>CCT	p.P1894P	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1894					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTTCCAGAAAGGGTGACTGAT	0.473													17	7					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321835	79321835	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:79321835C>T	uc010mpk.2	-	8	5479	c.5355G>A	c.(5353-5355)GAG>GAA	p.E1785E	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1785					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						AAGATCTCTTCTCCTTCTCCA	0.443													12	12					0	0	1	0	0
VPS13A	23230	broad.mit.edu	37	9	79933406	79933406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:79933406G>A	uc004akr.2	+	41	5472	c.5212G>A	c.(5212-5214)GGT>AGT	p.G1738S	VPS13A_uc004akp.3_Missense_Mutation_p.G1738S|VPS13A_uc004akq.3_Missense_Mutation_p.G1738S|VPS13A_uc004aks.2_Missense_Mutation_p.G1699S|VPS13A_uc004akt.2_Missense_Mutation_p.G78S|VPS13A_uc010mpo.1_Missense_Mutation_p.G334S	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1738					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						GGCTGGAATTGGTCATAGAAC	0.393													57	25					0	0	1	0	0
ROR2	4920	broad.mit.edu	37	9	94486956	94486956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:94486956G>A	uc004arj.1	-	9	2019	c.1820C>T	c.(1819-1821)TCC>TTC	p.S607F	ROR2_uc004ari.1_Missense_Mutation_p.S467F	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	607	Cytoplasmic (Potential).|Protein kinase.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GTGGTGGCTGGATAGGTACTC	0.612													68	34					0	0	1	0	0
FGD3	89846	broad.mit.edu	37	9	95738935	95738935	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:95738935G>A	uc004asw.2	+	3	1025	c.397G>A	c.(397-399)GAA>AAA	p.E133K	FGD3_uc004asx.2_Missense_Mutation_p.E133K|FGD3_uc004asz.2_Missense_Mutation_p.E133K	NM_001083536	NP_001077005	Q5JSP0	FGD3_HUMAN	FYVE, RhoGEF and PH domain containing 3	133					actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(1)|breast(1)	2						CGTGGGTGAGGAACCTGACTC	0.672													14	10					0	0	1	0	0
C9orf102	375748	broad.mit.edu	37	9	98643395	98643395	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:98643395A>G	uc004avt.3	+	2	712	c.324A>G	c.(322-324)CGA>CGG	p.R108R	C9orf102_uc010mrx.1_RNA|C9orf102_uc011lum.1_5'UTR|C9orf102_uc010mry.1_5'UTR|C9orf102_uc010mrz.2_5'UTR	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	108					DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				TCCCAAACCGAAAATTTCCAT	0.323													25	16					0	0	1	0	0
TSTD2	158427	broad.mit.edu	37	9	100389828	100389828	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:100389828G>T	uc004axn.2	-	2	505	c.17C>A	c.(16-18)TCA>TAA	p.S6*	TSTD2_uc004axo.2_5'UTR|TSTD2_uc004axp.1_5'Flank	NM_139246	NP_640339	Q5T7W7	TSTD2_HUMAN	thiosulfate sulfurtransferase (rhodanese)-like	6										ovary(2)	2						TTGGTCTGGTGAAGTGGAAGA	0.388													70	41					3.71514e-35	3.80418e-35	1	1	0
CORO2A	7464	broad.mit.edu	37	9	100892148	100892148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:100892148C>T	uc004ayl.2	-	8	1161	c.895G>A	c.(895-897)GAG>AAG	p.E299K	CORO2A_uc004aym.2_Missense_Mutation_p.E299K|CORO2A_uc004ayk.2_5'Flank	NM_003389	NP_003380	Q92828	COR2A_HUMAN	coronin, actin binding protein, 2A	299	WD 5.				actin cytoskeleton organization|intracellular signal transduction	actin cytoskeleton|transcriptional repressor complex	actin filament binding			skin(2)|ovary(1)|pancreas(1)	4		Acute lymphoblastic leukemia(62;0.0559)				GCGCTCACCTCGTAGTAGCGG	0.438													57	37					0	0	1	0	0
GALNT12	79695	broad.mit.edu	37	9	101585547	101585547	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:101585547G>A	uc004ayz.2	+	2	381	c.381G>A	c.(379-381)GAG>GAA	p.E127E		NM_024642	NP_078918	Q8IXK2	GLT12_HUMAN	N-acetylgalactosaminyltransferase 12	127	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(62;0.0559)				GGTGCAAAGAGAAGAAATATG	0.463													35	24					0	0	1	0	0
OR13C2	392376	broad.mit.edu	37	9	107367296	107367296	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:107367296A>T	uc011lvq.1	-	1	613	c.613T>A	c.(613-615)TTG>ATG	p.L205M		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AATATGAACAATGTTGTGGCC	0.398													87	58					0	0	1	0	0
PTPN3	5774	broad.mit.edu	37	9	112168762	112168762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:112168762G>A	uc004bed.2	-	18	1884	c.1772C>T	c.(1771-1773)GCC>GTC	p.A591V	PTPN3_uc004beb.2_Missense_Mutation_p.A460V|PTPN3_uc004bec.2_Missense_Mutation_p.A415V|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.A546V|PTPN3_uc011lwh.1_Missense_Mutation_p.A437V|PTPN3_uc011lwd.1_Missense_Mutation_p.A59V|PTPN3_uc011lwe.1_Missense_Mutation_p.A304V|PTPN3_uc011lwf.1_Missense_Mutation_p.A259V	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	591					negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						GATCACCAGGGCCAGCTCCCG	0.557													94	52					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113170542	113170542	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:113170542G>A	uc010mtz.2	-	38	7675	c.7338C>T	c.(7336-7338)ATC>ATT	p.I2446I	SVEP1_uc010mty.2_Silent_p.I372I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2446	Sushi 18.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TTCCATTGGGGATTTCCTCAG	0.498													21	18					0	0	1	0	0
FKBP15	23307	broad.mit.edu	37	9	115931745	115931745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:115931745C>T	uc004bgs.2	-	26	3362	c.3244G>A	c.(3244-3246)GAA>AAA	p.E1082K	FKBP15_uc004bgr.2_Missense_Mutation_p.E519K|FKBP15_uc011lxc.1_Missense_Mutation_p.E663K|FKBP15_uc011lxd.1_Missense_Mutation_p.E1014K	NM_015258	NP_056073	Q5T1M5	FKB15_HUMAN	FK506 binding protein 15, 133kDa	1082					endocytosis|protein folding	axon|early endosome	actin binding			ovary(3)	3						GGTGCTACTTCCCTGACACAG	0.582													102	64					0	0	1	0	0
TNFSF8	944	broad.mit.edu	37	9	117692581	117692581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:117692581C>T	uc004bji.1	-	1	190	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	1	Cytoplasmic (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						GCCCTGGGTCCATTCTTTATA	0.562													37	17					0	0	1	0	0
TNC	3371	broad.mit.edu	37	9	117848761	117848761	+	Missense_Mutation	SNP	G	C	C	rs150548325		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:117848761G>C	uc004bjj.3	-	3	1611	c.1249C>G	c.(1249-1251)CGC>GGC	p.R417G	TNC_uc010mvf.2_Missense_Mutation_p.R417G	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	417	EGF-like 9.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						TTGACACAGCGGCCATGGCCA	0.602													41	32					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118949993	118949993	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:118949993C>T	uc004bjn.2	+	2	1357	c.976C>T	c.(976-978)CTG>TTG	p.L326L	PAPPA_uc011lxp.1_Silent_p.L119L|PAPPA_uc011lxq.1_Silent_p.L119L	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	326	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGAGCCTCCTCTGTGCGGACA	0.567													32	23					0	0	1	0	0
DAB2IP	153090	broad.mit.edu	37	9	124522694	124522694	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:124522694C>T	uc004bln.2	+	6	1131	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	DAB2IP_uc004blo.2_Silent_p.I258I	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	382	Ras-GAP.				activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						TGGTGCACATCCTGCAGAGCA	0.632													19	11					0	0	1	0	0
OR1N2	138882	broad.mit.edu	37	9	125315490	125315490	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:125315490G>A	uc011lyx.1	+	1	42	c.42G>A	c.(40-42)GGG>GGA	p.G14G		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						AACTACAAGGGATGGGAAAAC	0.368													37	27					0	0	1	0	0
OR1L3	26735	broad.mit.edu	37	9	125438106	125438106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:125438106G>A	uc011lzb.1	+	1	698	c.698G>A	c.(697-699)GGA>GAA	p.G233E		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCAGCAGCTGGAAAACACAAA	0.453													20	14					0	0	1	0	0
RALGPS1	9649	broad.mit.edu	37	9	129958878	129958878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:129958878C>T	uc004bqo.1	+	13	1430	c.1163C>T	c.(1162-1164)TCC>TTC	p.S388F	RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron	NM_014636	NP_055451	Q5JS13	RGPS1_HUMAN	Ral GEF with PH domain and SH3 binding motif 1	388					small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity			ovary(1)	1						GCTCTGACCTCCTCCTCTGCT	0.602													61	39					0	0	1	0	0
FAM129B	64855	broad.mit.edu	37	9	130279194	130279194	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:130279194G>A	uc004brh.2	-	8	1117	c.915C>T	c.(913-915)ATC>ATT	p.I305I	FAM129B_uc004bri.2_Silent_p.I292I|FAM129B_uc004brj.3_Silent_p.I305I	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	305							protein binding				0						TGTCAGTTCGGATGACGGCCT	0.642													205	131					0	0	1	0	0
ST6GALNAC6	30815	broad.mit.edu	37	9	130649777	130649777	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:130649777G>A	uc004bso.1	-	6	917	c.798C>T	c.(796-798)CCC>CCT	p.P266P	ST6GALNAC6_uc004bsn.1_Silent_p.P232P|ST6GALNAC6_uc011man.1_Silent_p.P66P|ST6GALNAC6_uc004bsp.1_Silent_p.P266P|ST6GALNAC6_uc004bsq.1_Silent_p.P232P|ST6GALNAC6_uc004bsr.2_Silent_p.P232P|ST6GALNAC6_uc010mxp.1_RNA	NM_013443	NP_038471	Q969X2	SIA7F_HUMAN	sialytransferase 7F	266	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane|plasma membrane					0						AGTAGTTGGGGGGGACCATGC	0.607													17	14					0	0	1	0	0
SPTAN1	6709	broad.mit.edu	37	9	131337034	131337034	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:131337034C>T	uc004bvl.3	+	4	557	c.444C>T	c.(442-444)GCC>GCT	p.A148A	SPTAN1_uc011mbg.1_Silent_p.A148A|SPTAN1_uc011mbh.1_Silent_p.A160A|SPTAN1_uc004bvm.3_Silent_p.A148A|SPTAN1_uc004bvn.3_Silent_p.A148A	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	148					actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						TGCTGCAGGCCCAGAAGTTGG	0.463													45	21					0	0	1	0	0
PKN3	29941	broad.mit.edu	37	9	131469628	131469628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:131469628C>T	uc004bvw.2	+	6	1172	c.779C>T	c.(778-780)GCG>GTG	p.A260V	PKN3_uc010myh.2_Missense_Mutation_p.A260V|PKN3_uc011mbk.1_5'UTR	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	260					signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						TTGCGGGCTGCGGTGCCTGGA	0.612													3	48					0	0	1	0	0
CRAT	1384	broad.mit.edu	37	9	131857787	131857787	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:131857787C>T	uc004bxh.2	-	14	2052	c.1770G>A	c.(1768-1770)TCG>TCA	p.S590S	CRAT_uc004bxg.2_Silent_p.S569S|CRAT_uc004bxk.3_Silent_p.S569S	NM_000755	NP_000746	P43155	CACP_HUMAN	carnitine acetyltransferase precursor	590					energy derivation by oxidation of organic compounds|fatty acid beta-oxidation using acyl-CoA oxidase|transport	endoplasmic reticulum|mitochondrial inner membrane|peroxisomal matrix	carnitine O-acetyltransferase activity			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)	L-Carnitine(DB00583)	TGTTGTAGGCCGACAGGGAGA	0.647													31	15					0	0	1	0	0
FIBCD1	84929	broad.mit.edu	37	9	133799655	133799655	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:133799655G>A	uc004bzz.2	-	3	926	c.681C>T	c.(679-681)GCC>GCT	p.A227A	FIBCD1_uc011mcc.1_Silent_p.A227A	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	227	Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		GGGTTCCCCGGGCAGGCGCTC	0.721													10	6					0	0	1	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134467519	134467519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:134467519G>A	uc004cbc.2	-	15	2313	c.2183C>T	c.(2182-2184)TCC>TTC	p.S728F	RAPGEF1_uc004cbb.2_Missense_Mutation_p.S746F|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Missense_Mutation_p.S903F|RAPGEF1_uc004cbd.2_Missense_Mutation_p.S733F	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	728	N-terminal Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		CTCCTCTGGGGAGATGAAGGT	0.527													48	26					0	0	1	0	0
NTNG2	84628	broad.mit.edu	37	9	135102341	135102341	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:135102341G>A	uc004cbh.2	+	4	1739	c.963G>A	c.(961-963)AAG>AAA	p.K321K		NM_032536	NP_115925	Q96CW9	NTNG2_HUMAN	netrin G2 precursor	321	Laminin EGF-like 1.				axonogenesis	anchored to plasma membrane					0				OV - Ovarian serous cystadenocarcinoma(145;1.23e-05)|Epithelial(140;0.000173)		AGTGCAAGAAGAATTTCCGCA	0.682													19	4					0	0	1	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136305466	136305466	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:136305466G>A	uc004cdv.3	+	16	2232	c.1788G>A	c.(1786-1788)GCG>GCA	p.A596A	ADAMTS13_uc004cdp.3_5'UTR|ADAMTS13_uc004cdt.1_Silent_p.A596A|ADAMTS13_uc004cdu.1_Silent_p.A565A|ADAMTS13_uc004cdw.3_Silent_p.A596A|ADAMTS13_uc004cdx.3_Silent_p.A565A|ADAMTS13_uc004cdy.1_RNA|ADAMTS13_uc004cdz.3_Silent_p.A266A|ADAMTS13_uc004cds.1_Silent_p.A121A|ADAMTS13_uc004cdr.1_RNA	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	596	Spacer.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		CCCCGACAGCGGTGAGGATCG	0.627													55	34					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137620526	137620526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:137620526G>A	uc004cfe.2	+	6	1179	c.797G>A	c.(796-798)GGA>GAA	p.G266E		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	266	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TACACGGAAGGAGACGGCGAG	0.602													82	50					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137676865	137676865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:137676865G>A	uc004cfe.2	+	30	2897	c.2515G>A	c.(2515-2517)GAA>AAA	p.E839K		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	839	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCCCAGGGGAGAAGATGGCCC	0.622													25	29					0	0	1	0	0
COL5A1	1289	broad.mit.edu	37	9	137676889	137676889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:137676889G>A	uc004cfe.2	+	30	2921	c.2539G>A	c.(2539-2541)GGT>AGT	p.G847S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	847	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGGCCCAAAGGGTCGCGGAGG	0.627													23	25					0	0	1	0	0
CARD9	64170	broad.mit.edu	37	9	139262223	139262223	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:139262223C>T	uc004chg.3	-	8	1301	c.1135G>A	c.(1135-1137)GAC>AAC	p.D379N	CARD9_uc011mdw.1_Missense_Mutation_p.D379N|CARD9_uc011mdx.1_Missense_Mutation_p.D275N	NM_052813	NP_434700	Q9H257	CARD9_HUMAN	caspase recruitment domain protein 9 isoform 1	379	Potential.				positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of JNK cascade|positive regulation of stress-activated MAPK cascade|regulation of apoptosis	cytoplasm	CARD domain binding|protein homodimerization activity			pancreas(1)|lung(1)|skin(1)	3		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;4.58e-06)|Epithelial(140;5.65e-06)		CGCAGCGCGTCCTTCTCCTGC	0.692													19	10					0	0	1	0	0
SNAPC4	6621	broad.mit.edu	37	9	139273406	139273406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:139273406G>A	uc004chh.2	-	21	2882	c.2873C>T	c.(2872-2874)CCC>CTC	p.P958L		NM_003086	NP_003077	Q5SXM2	SNPC4_HUMAN	small nuclear RNA activating complex,	958	Pro-rich.				snRNA transcription from RNA polymerase II promoter|snRNA transcription from RNA polymerase III promoter	snRNA-activating protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.31e-06)|Epithelial(140;7.13e-06)		GGCTGCCGCGGGGGCCCCAGG	0.662													9	8					0	0	1	0	0
SDCCAG3	10807	broad.mit.edu	37	9	139298636	139298636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:139298636G>A	uc004chi.2	-	9	1284	c.1079C>T	c.(1078-1080)TCC>TTC	p.S360F	SDCCAG3_uc004chj.2_Missense_Mutation_p.S337F|SDCCAG3_uc004chk.2_Missense_Mutation_p.S287F	NM_001039707	NP_001034796	Q96C92	SDCG3_HUMAN	serologically defined colon cancer antigen 3	360	Potential.					cytoplasm					0		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;8.18e-06)|Epithelial(140;9.31e-06)		CTGGAAGTTGGAGACCTGCGC	0.667													55	57					0	0	1	0	0
SEC16A	9919	broad.mit.edu	37	9	139369651	139369651	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:139369651T>A	uc004chx.2	-	3	2726	c.2417A>T	c.(2416-2418)CAG>CTG	p.Q806L	SEC16A_uc004chv.3_Missense_Mutation_p.Q433L|SEC16A_uc004chw.2_Missense_Mutation_p.Q806L|SEC16A_uc010nbn.2_Missense_Mutation_p.Q806L|SEC16A_uc010nbo.1_Missense_Mutation_p.Q806L	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	628					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		AGAACTCGCCTGGGACTGAAG	0.547													17	11					0	0	1	0	0
MAMDC4	158056	broad.mit.edu	37	9	139748356	139748356	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:139748356C>T	uc004cjs.2	+	5	632	c.582C>T	c.(580-582)TTC>TTT	p.F194F	MAMDC4_uc011mej.1_5'UTR	NM_206920	NP_996803	Q6UXC1	AEGP_HUMAN	apical early endosomal glycoprotein precursor	194	Extracellular (Potential).|MAM 1.				protein transport	integral to membrane				breast(4)|upper_aerodigestive_tract(2)|central_nervous_system(1)	7	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.52e-05)|Epithelial(140;0.000171)		GGGGTGACTTCCGAGTGAGCT	0.652													11	12					0	0	1	0	0
CLIC3	9022	broad.mit.edu	37	9	139889928	139889928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:139889928C>T	uc004ckj.1	-	3	264	c.235G>A	c.(235-237)GAG>AAG	p.E79K		NM_004669	NP_004660	O95833	CLIC3_HUMAN	chloride intracellular channel 3	79	GST N-terminal.|Required for insertion into the membrane (By similarity).				signal transduction	chloride channel complex|cytoplasm|nucleus	protein binding|voltage-gated chloride channel activity				0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		AGAAAGTCCTCGATCTGCAGC	0.682													81	55					0	0	1	0	0
CACNA1B	774	broad.mit.edu	37	9	141012425	141012425	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:141012425G>A	uc004cog.2	+	42	5950	c.5805G>A	c.(5803-5805)GAG>GAA	p.E1935E	CACNA1B_uc004coi.2_Silent_p.E1147E	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1935	Cytoplasmic (Potential).				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GCATCAAAGAGTCTGTCTCCT	0.577													6	5					0	0	1	0	0
Unknown	0	broad.mit.edu	37	MT	14065	14065	+	RNA	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrM:14065A>G	uc004cox.3	+	1		c.1729A>G			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		CCTCCATCATCACCTCAACCC	0.433													3	1					0	0	1	0	0
Unknown	0	broad.mit.edu	37	MT	14309	14309	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrM:14309C>T	uc004cox.3	+	1		c.1973C>T			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		TTATTCAGCTTCCTACACTAT	0.463													7	0					0	0	1	0	0
ZBED1	9189	broad.mit.edu	37	X	2408224	2408225	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:2408224_2408225GG>AA	uc004cqg.2	-	2	737_738	c.536_537CC>TT	c.(535-537)GCC>GTT	p.A179V	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Missense_Mutation_p.A179V	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	179						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CCTCCCGGACGGCCCCGTACTT	0.629													120	121					0	0	1	0	0
MXRA5	25878	broad.mit.edu	37	X	3240122	3240122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:3240122G>A	uc004crg.3	-	5	3761	c.3604C>T	c.(3604-3606)CCT>TCT	p.P1202S		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1202						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CAAGCTGTAGGAACCAGAGAA	0.463													53	12					0	0	1	0	0
KAL1	3730	broad.mit.edu	37	X	8522054	8522054	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:8522054G>A	uc004csf.2	-	9	1443	c.1293C>T	c.(1291-1293)GTC>GTT	p.V431V		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	431	Fibronectin type-III 3.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						AGGGAGCTCCGACTTCCAGCG	0.413													29	7					0	0	1	0	0
MID1	4281	broad.mit.edu	37	X	10427798	10427798	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:10427798C>T	uc004cte.3	-	8	1526	c.1335G>A	c.(1333-1335)CAG>CAA	p.Q445Q	MID1_uc004ctd.3_Silent_p.Q156Q|MID1_uc004ctg.3_Silent_p.Q445Q|MID1_uc004cth.3_Silent_p.Q407Q|MID1_uc004ctk.3_Silent_p.Q445Q|MID1_uc004cti.3_Silent_p.Q445Q|MID1_uc004ctj.3_Silent_p.Q445Q|MID1_uc011mie.1_RNA|MID1_uc004csz.3_Silent_p.Q117Q|MID1_uc004cta.3_Silent_p.Q201Q|MID1_uc004ctb.3_Silent_p.Q105Q|MID1_uc004ctc.3_Silent_p.Q212Q	NM_033290	NP_150632	O15344	TRI18_HUMAN	midline 1	445	Fibronectin type-III.				microtubule cytoskeleton organization|pattern specification process|positive regulation of stress-activated MAPK cascade	cytoplasm|microtubule|microtubule associated complex|spindle	ligase activity|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|pancreas(1)	3						TGTAGTGGTTCTGCTTGATGT	0.542													142	38					0	0	1	0	0
BMX	660	broad.mit.edu	37	X	15540483	15540484	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:15540483_15540484GG>AA	uc004cww.2	+	7	713_714	c.525_526GG>AA	c.(523-528)CGGGCA>CGAACA	p.A176T	BMX_uc004cwx.3_Missense_Mutation_p.A176T|BMX_uc004cwy.3_Missense_Mutation_p.A176T	NM_203281	NP_975010	P51813	BMX_HUMAN	BMX non-receptor tyrosine kinase	176					cellular component disassembly involved in apoptosis|intracellular signal transduction|mesoderm development	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(3)|ovary(2)	5	Hepatocellular(33;0.183)					AGATACCTCGGGCAGTTCCTGT	0.436													104	54					0	0	1	0	0
REPS2	9185	broad.mit.edu	37	X	17072992	17072992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:17072992C>T	uc004cxv.1	+	8	1204	c.1033C>T	c.(1033-1035)CAT>TAT	p.H345Y	REPS2_uc004cxw.1_Missense_Mutation_p.H344Y|REPS2_uc011miw.1_Missense_Mutation_p.H204Y	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	345	EH 2.|EF-hand.				epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					TGCTGCGTTTCATCTCATTGT	0.537													48	13					0	0	1	0	0
NHS	4810	broad.mit.edu	37	X	17742491	17742491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:17742491G>A	uc004cxx.2	+	5	1456	c.1118G>A	c.(1117-1119)CGA>CAA	p.R373Q	NHS_uc011mix.1_Missense_Mutation_p.R394Q|NHS_uc004cxy.2_Missense_Mutation_p.R217Q|NHS_uc004cxz.2_Missense_Mutation_p.R196Q|NHS_uc004cya.2_Missense_Mutation_p.R96Q	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	373	Nuclear localization signal (Potential).					nucleus		p.R373Q(2)		skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					CAGCGGAGACGAAAATTGAGG	0.448													64	15					0	0	1	0	0
FAM48B2	170067	broad.mit.edu	37	X	24330726	24330726	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:24330726T>G	uc011mjw.1	-	1	707	c.707A>C	c.(706-708)GAA>GCA	p.E236A		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	236											0						GAGGCACTGTTCCATCGGGTC	0.537													52	23					0	0	1	0	0
POLA1	5422	broad.mit.edu	37	X	24742541	24742541	+	Silent	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:24742541A>G	uc004dbl.2	+	12	1295	c.1272A>G	c.(1270-1272)AAA>AAG	p.K424K	POLA1_uc004dbm.2_Silent_p.K430K|POLA1_uc004dbn.2_Silent_p.K288K	NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	424					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	TAGCAACAAAATATAAAATTA	0.303													35	14					0	0	1	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157798	26157798	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:26157798G>A	uc004dbq.1	+	2	883	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	232	MAGE.						protein binding			central_nervous_system(1)	1						ATGCCGATAGGAAGCACTTCC	0.493													16	6					0	0	1	0	0
FTHL17	53940	broad.mit.edu	37	X	31089921	31089921	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:31089921C>T	uc004dcl.1	-	1	253	c.150G>A	c.(148-150)GAG>GAA	p.E50E		NM_031894	NP_114100	Q9BXU8	FHL17_HUMAN	ferritin, heavy polypeptide-like 17	50	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport		ferric iron binding|oxidoreductase activity				0						GGAAGAAGTTCTCCAGGGCCA	0.592													52	33					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36162877	36162877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:36162877C>T	uc004ddk.1	+	11	1646	c.1460C>T	c.(1459-1461)TCC>TTC	p.S487F		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	487	Helical; (Potential).					integral to membrane				central_nervous_system(1)	1						atctctttctccctttggagc	0													12	3					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027273	37027273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:37027273G>A	uc004ddl.1	+	1	804	c.790G>A	c.(790-792)GAG>AAG	p.E264K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	264										ovary(3)	3						GGAGCCTCCCGAGACTGGAGT	0.612													49	18					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027790	37027790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:37027790C>T	uc004ddl.1	+	1	1321	c.1307C>T	c.(1306-1308)TCT>TTT	p.S436F		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	436										ovary(3)	3						ACTCGCGGATCTCATCTCCGC	0.612													60	19					0	0	1	0	0
LANCL3	347404	broad.mit.edu	37	X	37431144	37431144	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:37431144C>T	uc011mkd.1	+	1	323	c.21C>T	c.(19-21)TTC>TTT	p.F7F	LANCL3_uc004ddp.1_Silent_p.F7F	NM_198511	NP_940913	Q6ZV70	LANC3_HUMAN	LanC lantibiotic synthetase component C-like 3	7							catalytic activity				0						AGCGCTGCTTCGCCAATCGCT	0.677													15	5					0	0	1	0	0
MAOB	4129	broad.mit.edu	37	X	43662611	43662611	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:43662611C>T	uc004dfz.3	-	4	496	c.320G>A	c.(319-321)TGG>TAG	p.W107*	MAOB_uc011mkx.1_Nonsense_Mutation_p.W91*|MAOB_uc011mky.1_Nonsense_Mutation_p.W91*	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	107	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	AATTGGATTCCATACAGGTGG	0.368													34	20					0	0	1	0	0
CLCN5	1184	broad.mit.edu	37	X	49856860	49856860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:49856860C>T	uc004dos.1	+	12	2473	c.2225C>T	c.(2224-2226)TCC>TTC	p.S742F	CLCN5_uc004dor.1_Missense_Mutation_p.S812F|CLCN5_uc004doq.1_Missense_Mutation_p.S812F|CLCN5_uc004dot.1_Missense_Mutation_p.S742F	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	742	CBS 2.|Cytoplasmic (By similarity).				excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					GATCCTGATTCCATTCTCTTC	0.373													29	8					0	0	1	0	0
AKAP4	8852	broad.mit.edu	37	X	49957283	49957283	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:49957283C>T	uc004dow.1	-	5	2205	c.2081G>A	c.(2080-2082)GGG>GAG	p.G694E	AKAP4_uc004dov.1_Missense_Mutation_p.G311E|AKAP4_uc010njp.1_Missense_Mutation_p.G516E|AKAP4_uc004dou.1_Missense_Mutation_p.G685E	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	694					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TATAAATTGCCCGTTCGCTTG	0.458													26	16					0	0	1	0	0
AKAP4	8852	broad.mit.edu	37	X	49957301	49957301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:49957301C>T	uc004dow.1	-	5	2187	c.2063G>A	c.(2062-2064)GGG>GAG	p.G688E	AKAP4_uc004dov.1_Missense_Mutation_p.G305E|AKAP4_uc010njp.1_Missense_Mutation_p.G510E|AKAP4_uc004dou.1_Missense_Mutation_p.G679E	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	688					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TTGCTTCATCCCACTGGTACA	0.473													27	15					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50053241	50053241	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:50053241A>G	uc004dox.3	+	6	2370	c.2072A>G	c.(2071-2073)CAG>CGG	p.Q691R	CCNB3_uc004doy.2_Missense_Mutation_p.Q691R|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	691					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TCCCTCTTCCAGGAGGCTTTG	0.463													3	3					0	0	1	0	0
GSPT2	23708	broad.mit.edu	37	X	51487587	51487587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:51487587C>T	uc004dpl.2	+	1	1091	c.865C>T	c.(865-867)CCT>TCT	p.P289S		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	289	GTP (By similarity).				cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					TTTAGATGCCCCTGGCCACAA	0.443													104	34					0	0	1	0	0
SPANXN5	494197	broad.mit.edu	37	X	52825618	52825618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:52825618C>T	uc004drc.1	-	2	129	c.129G>A	c.(127-129)ATG>ATA	p.M43I		NM_001009616	NP_001009616	Q5MJ07	SPXN5_HUMAN	SPANX family, member N5	43											0	Ovarian(276;0.236)					CTGATGTTTTCATCTTTTTCA	0.398													39	11					0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	53172141	53172141	+	RNA	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:53172141C>T	uc004dry.2	+	3		c.1315C>T								full-length cDNA clone CS0DC007YA11 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		GCATGATGAACTTGATCTTCA	0.542													40	16					0	0	1	0	0
FAM120C	54954	broad.mit.edu	37	X	54209100	54209100	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:54209100C>G	uc004dsz.3	-	1	615	c.532G>C	c.(532-534)GAC>CAC	p.D178H	FAM120C_uc011moh.1_Missense_Mutation_p.D178H|FAM120C_uc004dta.2_Missense_Mutation_p.D178H	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	178										ovary(1)|central_nervous_system(1)	2						GCCAGCCGGTCCTTGCCCAGG	0.706													13	6					0	0	1	0	0
SPIN2A	54466	broad.mit.edu	37	X	57162278	57162278	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:57162278G>A	uc004dvb.2	-	2	1124	c.753C>T	c.(751-753)GTC>GTT	p.V251V		NM_019003	NP_061876	Q99865	SPI2A_HUMAN	spindlin family, member 2	251					cell cycle|gamete generation						0						CCAAATCGTAGACATAGATAT	0.373													23	12					0	0	1	0	0
ARR3	407	broad.mit.edu	37	X	69500629	69500629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:69500629G>A	uc004dyb.2	+	15	1095	c.1027G>A	c.(1027-1029)GAG>AAG	p.E343K	ARR3_uc004dya.2_Missense_Mutation_p.E343K|RAB41_uc004dyc.2_5'Flank|RAB41_uc010nkv.2_5'Flank	NM_004312	NP_004303	P36575	ARRC_HUMAN	arrestin 3, retinal (X-arrestin)	343					signal transduction|visual perception	cytoplasm|soluble fraction				large_intestine(2)|ovary(2)	4						TGTTGGTGTGGAGCTACCCTT	0.547													49	18					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73063804	73063804	+	RNA	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:73063804G>A	uc004ebm.1	-	1		c.8785C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						GCCTTGGAGGGAAACAGTATA	0.383													7	3					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73961513	73961513	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:73961513G>A	uc004eby.2	-	3	3496	c.2879C>T	c.(2878-2880)TCT>TTT	p.S960F		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	960					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGAGTCATCAGATGGGAGTTG	0.433													93	30					0	0	1	0	0
CYLC1	1538	broad.mit.edu	37	X	83128218	83128218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:83128218G>A	uc004eei.1	+	4	523	c.502G>A	c.(502-504)GAA>AAA	p.E168K	CYLC1_uc004eeh.1_Missense_Mutation_p.E167K	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	168					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						ATCATCACATGAAAATGAACA	0.323													13	9					0	0	1	0	0
CYLC1	1538	broad.mit.edu	37	X	83129179	83129179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:83129179C>T	uc004eei.1	+	4	1484	c.1463C>T	c.(1462-1464)TCT>TTT	p.S488F	CYLC1_uc004eeh.1_Missense_Mutation_p.S487F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	488	6.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						GAAATGGAATCTGATTTGGAG	0.343													9	4					0	0	1	0	0
POF1B	79983	broad.mit.edu	37	X	84634289	84634289	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:84634289C>T	uc004eer.2	-	2	317	c.171G>A	c.(169-171)GGG>GGA	p.G57G	POF1B_uc004ees.2_Silent_p.G57G	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	57							actin binding				0						TGTTCATGGGCCCACTGTAGG	0.542													18	7					0	0	1	0	0
KLHL4	56062	broad.mit.edu	37	X	86888766	86888766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:86888766G>A	uc004efb.2	+	8	1749	c.1567G>A	c.(1567-1569)GGA>AGA	p.G523R	KLHL4_uc004efa.2_Missense_Mutation_p.G523R	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	523	Kelch 2.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						CACTCTTGAAGGACCAATGTA	0.403													28	11					0	0	1	0	0
CSTF2	1478	broad.mit.edu	37	X	100087728	100087728	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:100087728A>T	uc004egh.2	+	10	1095	c.1037A>T	c.(1036-1038)TAC>TTC	p.Y346F	CSTF2_uc010nnd.2_Missense_Mutation_p.Y366F|CSTF2_uc004egi.2_Missense_Mutation_p.Y329F	NM_001325	NP_001316	P33240	CSTF2_HUMAN	cleavage stimulation factor subunit 2	346	Gly/Pro-rich.				mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	cleavage body|mRNA cleavage and polyadenylation specificity factor complex	nucleotide binding|protein binding|protein binding|RNA binding			skin(1)	1						TCCAGAGGTTACTTGGGACCA	0.483													22	4					0	0	1	0	0
TCEAL6	158931	broad.mit.edu	37	X	101395790	101395790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:101395790G>A	uc004eiq.2	-	3	675	c.514C>T	c.(514-516)CCA>TCA	p.P172S		NM_001006938	NP_001006939	Q6IPX3	TCAL6_HUMAN	transcription elongation factor A (SII)-like 6	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						TGGGCGAATGGATCCTGTACA	0.502													17	2					0	0	1	0	0
RAB40AL	282808	broad.mit.edu	37	X	102193059	102193059	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:102193059C>T	uc004ejs.2	+	1	860	c.813C>T	c.(811-813)ACC>ACT	p.T271T		NM_001031834	NP_001027004	P0C0E4	RB40L_HUMAN	RAB40A, member RAS oncogene family-like	271					protein transport|small GTPase mediated signal transduction	mitochondrion|plasma membrane	GTP binding			ovary(2)	2						AAAACTGCACCAGAAACAGCT	0.507													38	18					0	0	1	0	0
TCEAL3	85012	broad.mit.edu	37	X	102864506	102864506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:102864506C>T	uc004ekq.2	+	3	776	c.514C>T	c.(514-516)CCA>TCA	p.P172S	TCEAL3_uc004ekr.2_Missense_Mutation_p.P172S	NM_001006933	NP_001006934	Q969E4	TCAL3_HUMAN	transcription elongation factor A (SII)-like 3	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TGTACAGGATCCATTCGCCCC	0.512													50	194					0	0	1	0	0
GLRA4	441509	broad.mit.edu	37	X	102979084	102979084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:102979084C>T	uc011mse.1	-	4	837	c.416G>A	c.(415-417)GGG>GAG	p.G139E	GLRA4_uc010nou.2_Missense_Mutation_p.G139E	NM_001024452	NP_001019623	Q5JXX5	GLRA4_HUMAN	glycine receptor, alpha 4 precursor	139	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity				0						GAAGTTGGCCCCTTTCTCATT	0.527													114	42					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105137922	105137922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:105137922G>A	uc004emd.2	+	6	779	c.476G>A	c.(475-477)CGA>CAA	p.R159Q	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	159	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TATATCTGCCGAGAAATCCTT	0.403										HNSCC(51;0.14)			15	2					0	0	1	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280808	105280808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:105280808G>A	uc004eme.1	-	1	258	c.242C>T	c.(241-243)TCC>TTC	p.S81F	SERPINA7_uc010npd.2_Missense_Mutation_p.S81F|SERPINA7_uc010npe.1_Missense_Mutation_p.S81F	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	81					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GGCCCCAAAGGAAAGCATAAC	0.498													41	7					0	0	1	0	0
RNF128	79589	broad.mit.edu	37	X	105937258	105937258	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:105937258T>G	uc004emk.2	+	1	191	c.26T>G	c.(25-27)TTT>TGT	p.F9C		NM_024539	NP_078815	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 2	Error:Variant_position_missing_in_Q8TEB7_after_alignment						endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						AGGTCCAGTTTTTTTTGGCTC	0.343													21	8					0	0	1	0	0
GUCY2F	2986	broad.mit.edu	37	X	108684589	108684589	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:108684589C>T	uc004eod.3	-	7	1968	c.1692G>A	c.(1690-1692)GCG>GCA	p.A564A	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	564	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						CCTCATAAATCGCTATGTTGG	0.403													70	23					0	0	1	0	0
DCX	1641	broad.mit.edu	37	X	110653522	110653522	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:110653522A>T	uc004epd.2	-	2	520	c.348T>A	c.(346-348)TGT>TGA	p.C116*	DCX_uc011msv.1_Nonsense_Mutation_p.C116*|DCX_uc004epe.2_Nonsense_Mutation_p.C35*|DCX_uc004epf.2_Nonsense_Mutation_p.C35*|DCX_uc004epg.2_Nonsense_Mutation_p.C35*	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	116					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						GGTAGAAGCTACAGTGGGCGC	0.507													57	33					0	0	1	0	0
TRPC5	7224	broad.mit.edu	37	X	111155953	111155953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:111155953C>T	uc004epl.1	-	3	1385	c.466G>A	c.(466-468)GAA>AAA	p.E156K	TRPC5_uc004epm.1_Missense_Mutation_p.E156K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	156	Cytoplasmic (Potential).|ANK 4.				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TTGATGATTTCGTAGTTGTTG	0.512													72	28					0	0	1	0	0
AMOT	154796	broad.mit.edu	37	X	112021840	112021840	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:112021840G>A	uc004epr.2	-	11	3210	c.3210C>T	c.(3208-3210)ATC>ATT	p.I1070I	AMOT_uc004eps.2_Silent_p.I661I	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	1070					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						CTTGTCCCAGGATCTGAATGG	0.408													137	47					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	113961378	113961378	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:113961378C>T	uc004epu.1	+	3	761	c.33C>T	c.(31-33)TTC>TTT	p.F11F	HTR2C_uc010nqc.1_Silent_p.F11F|HTR2C_uc004epv.1_Silent_p.F11F	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	11	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TGCATTCATTCCTGTAAGGAT	0.343													19	4					0	0	1	0	0
HTR2C	3358	broad.mit.edu	37	X	114141186	114141186	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:114141186G>A	uc004epu.1	+	6	1313	c.585G>A	c.(583-585)AGG>AGA	p.R195R	HTR2C_uc010nqc.1_Silent_p.R195R|HTR2C_uc004epv.1_Missense_Mutation_p.G164R	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	195	Extracellular (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	TTGGACTGAGGGACGAAGAAA	0.458													77	26					0	0	1	0	0
AGTR2	186	broad.mit.edu	37	X	115304602	115304602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:115304602G>A	uc004eqh.3	+	3	1276	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	357	Cytoplasmic (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						TTCTCTTAGAGAAATGGAGAC	0.423													41	17					0	0	1	0	0
CXorf61	203413	broad.mit.edu	37	X	115593014	115593014	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:115593014C>T	uc004eqj.1	-	2	356	c.236G>A	c.(235-237)CGA>CAA	p.R79Q		NM_001017978	NP_001017978	Q5H943	KKLC1_HUMAN	chromosome X open reading frame 61	79	Extracellular (Potential).					integral to membrane|plasma membrane					0						TACCAATATTCGCTTCTGCCT	0.428													70	33					0	0	1	0	0
ZBTB33	10009	broad.mit.edu	37	X	119388866	119388866	+	Silent	SNP	T	C	C	rs141549568	byFrequency	TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:119388866T>C	uc004esn.1	+	2	1824	c.1596T>C	c.(1594-1596)CCT>CCC	p.P532P	ZBTB33_uc010nqm.1_Silent_p.P532P	NM_006777	NP_006768	Q86T24	KAISO_HUMAN	kaiso	532	C2H2-type 2.|Interaction with CTNND1 (By similarity).|Required for DNA-binding (By similarity).				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|nucleolus|plasma membrane	DNA binding|protein binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						AGGTATTTCCTCTTGCAGAAT	0.423													107	27					0	0	1	0	0
GLUD2	2747	broad.mit.edu	37	X	120183214	120183214	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:120183214A>T	uc004eto.2	+	1	1753	c.1676A>T	c.(1675-1677)TAG>TTG	p.*559L		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	559					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	ACCTTCACATAGATGGATCAT	0.438													98	34					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122459974	122459974	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:122459974C>T	uc004etq.3	+	5	899	c.606C>T	c.(604-606)TTC>TTT	p.F202F	GRIA3_uc004etr.3_Silent_p.F202F|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_Silent_p.F186F	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	202	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TCCAAGAATTCAGGCGCATCA	0.443													43	17					0	0	1	0	0
SASH3	54440	broad.mit.edu	37	X	128926357	128926358	+	Missense_Mutation	DNP	CC	TT	TT	rs149215914		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:128926357_128926358CC>TT	uc011mun.1	+	5	678_679	c.496_497CC>TT	c.(496-498)CCT>TTT	p.P166F	SASH3_uc004euu.2_Missense_Mutation_p.P166F|SASH3_uc011muo.1_Missense_Mutation_p.P83F	NM_018990	NP_061863	O75995	SASH3_HUMAN	SAM and SH3 domain containing 3	166										ovary(2)|pancreas(1)	3						GGAGGAACCACCTGCCCCCCAG	0.624													101	33					0	0	1	0	0
AIFM1	9131	broad.mit.edu	37	X	129270669	129270670	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:129270669_129270670GG>AA	uc004evg.2	-	11	1290_1291	c.1112_1113CC>TT	c.(1111-1113)TCC>TTT	p.S371F	AIFM1_uc011mur.1_Missense_Mutation_p.S19F|AIFM1_uc011mus.1_3'UTR|AIFM1_uc004evh.2_Missense_Mutation_p.S367F|AIFM1_uc004evi.2_Missense_Mutation_p.S84F|AIFM1_uc004evk.2_RNA	NM_004208	NP_004199	O95831	AIFM1_HUMAN	programmed cell death 8 isoform 1	371	FAD-dependent oxidoreductase (By similarity).				activation of caspase activity|apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytosol|mitochondrial inner membrane|mitochondrial intermembrane space|nucleus|perinuclear region of cytoplasm	DNA binding|electron carrier activity|flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			ovary(4)|central_nervous_system(1)	5						TGACTCCAACGGATTGCACAAT	0.48													49	16					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130409647	130409647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:130409647C>T	uc004ewd.2	-	16	3227	c.2989G>A	c.(2989-2991)GGA>AGA	p.G997R	IGSF1_uc004ewe.3_Missense_Mutation_p.G991R|IGSF1_uc004ewf.2_Missense_Mutation_p.G977R	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	997	Extracellular (Potential).|Ig-like C2-type 10.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						TATCCTACTCCATGGACCGGC	0.517													74	36					0	0	1	0	0
MST4	51765	broad.mit.edu	37	X	131202291	131202291	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:131202291G>A	uc004ewk.1	+	5	680	c.379G>A	c.(379-381)GAA>AAA	p.E127K	MST4_uc004ewl.1_Missense_Mutation_p.E50K|MST4_uc011mux.1_Missense_Mutation_p.E149K|MST4_uc010nrj.1_Missense_Mutation_p.E127K|MST4_uc004ewm.1_Missense_Mutation_p.E127K	NM_016542	NP_057626	Q9P289	MST4_HUMAN	serine/threonine protein kinase MST4 isoform 1	127	Protein kinase.				cellular component disassembly involved in apoptosis|regulation of apoptosis	cytosol|Golgi membrane	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(3)|stomach(2)|upper_aerodigestive_tract(1)	9	Acute lymphoblastic leukemia(192;0.000127)					CATGCTAAAGGAAATTTTAAA	0.358													40	19					0	0	1	0	0
FRMD7	90167	broad.mit.edu	37	X	131212013	131212013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:131212013G>A	uc004ewn.2	-	12	2210	c.2032C>T	c.(2032-2034)CGC>TGC	p.R678C	FRMD7_uc011muy.1_Missense_Mutation_p.R663C	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	678					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GAAGACAGGCGGATTCTGGCC	0.398													42	10					0	0	1	0	0
F9	2158	broad.mit.edu	37	X	138619174	138619174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:138619174C>T	uc004fas.1	+	2	123	c.94C>T	c.(94-96)CTT>TTT	p.L32F	F9_uc004fat.1_Missense_Mutation_p.L32F	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	32					blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	TTCAGTTTTTCTTGATCATGA	0.294													36	30					0	0	1	0	0
F9	2158	broad.mit.edu	37	X	138630545	138630545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:138630545G>A	uc004fas.1	+	5	444	c.415G>A	c.(415-417)GGC>AGC	p.G139S	F9_uc004fat.1_Missense_Mutation_p.G101S	NM_000133	NP_000124	P00740	FA9_HUMAN	coagulation factor IX preproprotein	139	EGF-like 2.		G -> S (in HEMB).|G -> D (in HEMB; severe).		blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen|plasma membrane	calcium ion binding|serine-type endopeptidase activity			lung(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;0.000127)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Heparin(DB01109)|Menadione(DB00170)	CATTAAGAATGGCAGATGCGA	0.378													49	18					0	0	1	0	0
SPANXC	64663	broad.mit.edu	37	X	140335825	140335825	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:140335825T>A	uc004fbk.2	-	2	175	c.119A>T	c.(118-120)AAA>ATA	p.K40I	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	40	Nuclear localization signal (Potential).					cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TTTCATTTTTTTAGGAGCAGG	0.498													34	35					0	0	1	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291539	141291539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:141291539G>A	uc004fbu.1	-	3	583	c.235C>T	c.(235-237)CTT>TTT	p.L79F		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	79						cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTCTCGGTAAGATTTGGTATC	0.378										HNSCC(46;0.14)			26	13					0	0	1	0	0
SPANXN3	139067	broad.mit.edu	37	X	142605209	142605209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:142605209G>A	uc004fbw.2	-	1	99	c.11C>T	c.(10-12)CCA>CTA	p.P4L		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	4										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GCTGGAAGTTGGCTGTTCCAT	0.398													101	28					0	0	1	0	0
CD99L2	83692	broad.mit.edu	37	X	149999715	149999715	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:149999715G>A	uc004fel.2	-	2	237	c.119C>T	c.(118-120)TCC>TTC	p.S40F	CD99L2_uc004fem.2_Missense_Mutation_p.S40F|CD99L2_uc004fen.2_Missense_Mutation_p.S40F|CD99L2_uc004feo.2_RNA|CD99L2_uc011myb.1_Missense_Mutation_p.S40F	NM_031462	NP_113650	Q8TCZ2	C99L2_HUMAN	CD99 antigen-like 2 isoform E3'-E4'-E3-E4	40	Extracellular (Potential).				cell adhesion	cell junction|integral to membrane				large_intestine(2)|ovary(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CTTTACTGAGGAAGTTTCTTT	0.294													53	12					0	0	1	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303919	151303919	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:151303919G>A	uc004ffk.2	-	5	582	c.174C>T	c.(172-174)TCC>TCT	p.S58S	MAGEA10_uc004ffl.2_Silent_p.S58S	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	58	Poly-Ser.										0	Acute lymphoblastic leukemia(192;6.56e-05)					aggaggaggaggaagaggagg	0.408													3	68					0	0	1	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900743	151900743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:151900743C>T	uc010ntp.2	-	3	412	c.58G>A	c.(58-60)GGA>AGA	p.G20R	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Missense_Mutation_p.G20R|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	20										skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGGCCTCTCCTTGGGCCTCA	0.622													34	14					0	0	1	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935417	151935417	+	Silent	SNP	G	A	A	rs149076914		TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:151935417G>A	uc004fgp.2	-	3	959	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	250	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TTTCCTGCACGAAATGTTGGG	0.537													99	37					0	0	1	0	0
FAM58A	92002	broad.mit.edu	37	X	152860004	152860004	+	Splice_Site	SNP	C	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:152860004C>G	uc010nug.2	-	2	346	c.243_splice	c.e2+1	p.K81_splice				Q8N1B3	FA58A_HUMAN	RecName: Full=Cyclin-related protein FAM58B;						regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCAGTATGTACCTTGTGTGGA	0.542													70	20					0	0	1	0	0
PDZD4	57595	broad.mit.edu	37	X	153070966	153070966	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:153070966C>T	uc004fiz.1	-	6	895	c.645G>A	c.(643-645)GAG>GAA	p.E215E	PDZD4_uc004fiy.1_Silent_p.E140E|PDZD4_uc004fix.2_Silent_p.E119E|PDZD4_uc004fja.1_Silent_p.E221E|PDZD4_uc011mze.1_Silent_p.E106E	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	215						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACACCTGACTCTCAGGTCGGG	0.602													51	14					0	0	1	0	0
ARHGAP4	393	broad.mit.edu	37	X	153175712	153175712	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:153175712T>G	uc004fjk.1	-	17	2111	c.2069A>C	c.(2068-2070)CAG>CCG	p.Q690P	ARHGAP4_uc004fjj.1_Missense_Mutation_p.Q41P|ARHGAP4_uc011mzf.1_Missense_Mutation_p.Q667P|ARHGAP4_uc004fjl.1_Missense_Mutation_p.Q730P|ARHGAP4_uc010nup.1_Intron	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	690	Rho-GAP.				apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCGATCGGGCTGCACTATGAG	0.701													22	8					0	0	1	0	0
FLNA	2316	broad.mit.edu	37	X	153579321	153579321	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:153579321G>A	uc004fkk.2	-	44	7361	c.7112C>T	c.(7111-7113)CCC>CTC	p.P2371L	FLNA_uc004fki.2_Missense_Mutation_p.P414L|FLNA_uc011mzn.1_Missense_Mutation_p.P504L|FLNA_uc010nuu.1_Missense_Mutation_p.P2363L	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	2371	Filamin 22.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGCTCCTGAGGGGCTGTGCAC	0.627													117	26					0	0	1	0	0
FLNA	2316	broad.mit.edu	37	X	153586928	153586928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:153586928C>T	uc004fkk.2	-	27	4732	c.4483G>A	c.(4483-4485)GAG>AAG	p.E1495K	FLNA_uc011mzn.1_5'Flank|FLNA_uc010nuu.1_Missense_Mutation_p.E1495K	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	1495	Interaction with furin (By similarity).|Filamin 13.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCCACTGGCTCCACCAGGCCT	0.622													57	9					0	0	1	0	0
SLC10A3	8273	broad.mit.edu	37	X	153716920	153716920	+	Silent	SNP	C	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrX:153716920C>A	uc004flq.2	-	3	624	c.360G>T	c.(358-360)GTG>GTT	p.V120V	UBL4A_uc004flo.2_5'Flank|SLC10A3_uc004flr.2_Intron|SLC10A3_uc004flp.2_Silent_p.V120V	NM_001142392	NP_001135864	P09131	P3_HUMAN	solute carrier family 10, member 3 isoform 1	120					organic anion transport	integral to membrane	bile acid:sodium symporter activity			ovary(1)|skin(1)	2	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TTATAGCACTCACGTTCTTGA	0.642													40	20					7.63091e-17	7.72525e-17	1	1	0
TGIF2LY	90655	broad.mit.edu	37	Y	3447713	3447713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrY:3447713C>T	uc004fqk.2	+	2	492	c.428C>T	c.(427-429)CCG>CTG	p.P143L		NM_139214	NP_631960	Q8IUE0	TF2LY_HUMAN	TGFB-induced factor homeobox 2-like, Y-linked	143						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGTCTGTGCCGGCCAAGTCA	0.582													11	16					0	0	1	0	0
TBL1Y	90665	broad.mit.edu	37	Y	6942649	6942649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrY:6942649C>T	uc004frb.2	+	13	1590	c.943C>T	c.(943-945)CCT>TCT	p.P315S	TBL1Y_uc004frc.2_Missense_Mutation_p.P315S|TBL1Y_uc004frd.2_Missense_Mutation_p.P315S|TBL1Y_uc011nap.1_Missense_Mutation_p.P157S	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	315					transcription, DNA-dependent						0						ACAGCAGTTTCCTTTTCATTC	0.274													21	34					0	0	1	0	0
PRKY	5616	broad.mit.edu	37	Y	7235403	7235403	+	Silent	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrY:7235403G>A	uc004fre.2	+	6	1162	c.822G>A	c.(820-822)GGG>GGA	p.G274G		NM_002760	NP_002751			RecName: Full=Serine/threonine-protein kinase PRKX;          EC=2.7.11.1; AltName: Full=Protein kinase PKX1;												0						GAAGAACGGGGCGAATGATGT	0.433													16	11					0	0	1	0	0
KDM5D	8284	broad.mit.edu	37	Y	21868069	21868069	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrY:21868069G>A	uc004fug.2	-	27	4720	c.4432C>T	c.(4432-4434)CGA>TGA	p.R1478*	KDM5D_uc011naz.1_Nonsense_Mutation_p.R1509*|KDM5D_uc010nwy.2_Nonsense_Mutation_p.R1421*|KDM5D_uc004fuf.2_Nonsense_Mutation_p.R653*	NM_004653	NP_004644	Q9BY66	KDM5D_HUMAN	jumonji, AT rich interactive domain 1D isoform	1478					chromatin modification|spermatogenesis	nucleus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1					Vitamin C(DB00126)	TCTTCTTCTCGGCCCACCTGA	0.473													2	2					0	0	1	0	0
RPS4Y2	140032	broad.mit.edu	37	Y	22942837	22942837	+	Silent	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrY:22942837C>T	uc011nbb.1	+	7	807	c.711C>T	c.(709-711)TCC>TCT	p.S237S		NM_001039567	NP_001034656	Q8TD47	RS4Y2_HUMAN	ribosomal protein S4, Y-linked 2	237					translation	ribosome	rRNA binding|structural constituent of ribosome				0						CTTGGATTTCCCTGCCCAGGG	0.438													25	11					0	0	1	0	0
RBMY2FP	159162	broad.mit.edu	37	Y	24457559	24457559	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chrY:24457559C>T	uc004fvc.2	+	3	243	c.127C>T	c.(127-129)CGA>TGA	p.R43*	RBMY1F_uc011nbh.1_Intron|RBMY1F_uc004fvd.2_Intron	NR_002193				SubName: Full=HCG1658793, isoform CRA_b; SubName: Full=Putative uncharacterized protein RBMY2FP;												0						GATAAAGGATCGAACCAGCAA	0.353													6	11					0	0	1	0	0
HNRNPR	10236	broad.mit.edu	37	1	23637381	23637382	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:23637381_23637382delAG	uc001bgr.3	-	11	1626_1627	c.1467_1468delCT	c.(1465-1470)CCCTACfs	p.P489fs	HNRNPR_uc001bgo.2_Frame_Shift_Del_p.P99fs|HNRNPR_uc001bgp.3_Frame_Shift_Del_p.P492fs|HNRNPR_uc009vqk.2_Frame_Shift_Del_p.P391fs|HNRNPR_uc001bgs.3_Frame_Shift_Del_p.P388fs|HNRNPR_uc010odw.1_Frame_Shift_Del_p.P451fs|HNRNPR_uc010odx.1_Frame_Shift_Del_p.P329fs|HNRNPR_uc009vql.2_Frame_Shift_Del_p.P350fs	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	489_490	3; approximate.|3 X 11 AA approximate repeats of D-D-Y-Y- G-Y-D-Y-H-D-Y.|RNA-binding RGG-box.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		TAGCCGTAGTAGGGATCTTCAT	0.401													51	198	---	---	---	---					
ZNF644	84146	broad.mit.edu	37	1	91404473	91404473	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:91404473delT	uc001dnw.2	-	3	2580	c.2438delA	c.(2437-2439)AAGfs	p.K813fs	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Frame_Shift_Del_p.K813fs	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	813					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		CTTAGATTCCTTAATTACTCT	0.373													36	99	---	---	---	---					
PAPPA2	60676	broad.mit.edu	37	1	176563857	176563857	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr1:176563857delG	uc001gkz.2	+	3	2281	c.1117delG	c.(1117-1119)GGAfs	p.G373fs	PAPPA2_uc001gky.1_Frame_Shift_Del_p.G373fs|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	373					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CACTTACGATGGACGGCACAT	0.572													36	84	---	---	---	---					
EHBP1L1	254102	broad.mit.edu	37	11	65350324	65350324	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr11:65350324delG	uc001oeo.3	+	9	2446	c.2181delG	c.(2179-2181)CAGfs	p.Q727fs	EHBP1L1_uc001oep.1_Intron	NM_001099409	NP_001092879	Q8N3D4	EH1L1_HUMAN	tangerin	727	Glu-rich.									central_nervous_system(1)	1						TAGGGACCCAGGAGATAACAG	0.517													10	21	---	---	---	---					
FAR2	55711	broad.mit.edu	37	12	29423429	29423429	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:29423429delC	uc001ris.3	+	2	194	c.47delC	c.(46-48)ACGfs	p.T16fs	FAR2_uc001rit.2_Frame_Shift_Del_p.T16fs|FAR2_uc009zjm.2_Intron	NM_018099	NP_060569	Q96K12	FACR2_HUMAN	fatty acyl CoA reductase 2	16					ether lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	binding|oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor				0						ATTCTCATCACGGGGGCCACA	0.502													19	67	---	---	---	---					
SPRYD3	84926	broad.mit.edu	37	12	53467119	53467119	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:53467119delC	uc001sbt.1	-	6	665	c.644delG	c.(643-645)AGTfs	p.S215fs	SPRYD3_uc010snw.1_Frame_Shift_Del_p.S41fs	NM_032840	NP_116229	Q8NCJ5	SPRY3_HUMAN	SPRY domain containing 3	215										central_nervous_system(1)	1						ATCCTCGTAACTGTCCACCAT	0.632													7	26	---	---	---	---					
INHBC	3626	broad.mit.edu	37	12	57828910	57828910	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:57828910delG	uc001snv.1	+	1	368	c.241delG	c.(241-243)GGGfs	p.G81fs		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	81					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						GCACCTCCACGGGGTCCCACA	0.567													24	48	---	---	---	---					
PHLDA1	22822	broad.mit.edu	37	12	76425154	76425155	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr12:76425154_76425155insG	uc001sxu.2	-	1	402_403	c.367_368insC	c.(367-369)CGCfs	p.R123fs		NM_007350	NP_031376	Q8WV24	PHLA1_HUMAN	pleckstrin homology-like domain, family A,	123					apoptosis	cytoplasmic vesicle membrane|nucleolus|plasma membrane	protein binding				0		Colorectal(145;0.09)				TCCAGCCGCGCGGGCCGGGGGC	0.728													10	21	---	---	---	---					
TUBGCP5	114791	broad.mit.edu	37	15	22849078	22849078	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr15:22849078delC	uc001yur.3	+	10	1255	c.1125delC	c.(1123-1125)TTCfs	p.F375fs	TUBGCP5_uc001yuq.2_Frame_Shift_Del_p.F375fs|TUBGCP5_uc010axz.1_5'UTR	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	375					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		TCATTAGTTTCAAAGAGGAAC	0.388													17	25	---	---	---	---					
TCEB2	6923	broad.mit.edu	37	16	2822061	2822061	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:2822061delG	uc002crn.2	-	4	344	c.287delC	c.(286-288)CCGfs	p.P96fs	TCEB2_uc002crm.2_Frame_Shift_Del_p.P96fs	NM_007108	NP_009039	Q15370	ELOB_HUMAN	elongin B isoform a	96					positive regulation of viral transcription|protein complex assembly|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	cytosol|nucleoplasm	protein binding				0						CAGCTCTGGCGGGCTGGAAAA	0.612													15	23	---	---	---	---					
ITGAL	3683	broad.mit.edu	37	16	30500637	30500637	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:30500637delG	uc002dyi.3	+	11	1319	c.1143delG	c.(1141-1143)AAGfs	p.K381fs	ITGAL_uc002dyj.3_Frame_Shift_Del_p.K298fs|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	381	FG-GAP 3.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	TTGACCTGAAGGCAGACCTGC	0.552													15	82	---	---	---	---					
FHOD1	29109	broad.mit.edu	37	16	67267864	67267864	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr16:67267864delC	uc002esl.2	-	13	1854	c.1742delG	c.(1741-1743)GGAfs	p.G581fs	FHOD1_uc010ced.2_Frame_Shift_Del_p.G388fs|FHOD1_uc010vjh.1_Frame_Shift_Del_p.G241fs	NM_013241	NP_037373	Q9Y613	FHOD1_HUMAN	formin homology 2 domain containing 1	581	FH1.				actin cytoskeleton organization	cytoplasm|cytoskeleton|nucleus	actin binding			breast(2)|ovary(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		GGGGGGTACTCCCGAGAGCAG	0.622													18	37	---	---	---	---					
HOXB3	3213	broad.mit.edu	37	17	46628070	46628070	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr17:46628070delA	uc002inn.2	-	2	1322	c.922delT	c.(922-924)TACfs	p.Y308fs	HOXB3_uc010wlm.1_Frame_Shift_Del_p.Y235fs|HOXB3_uc010dbf.2_Frame_Shift_Del_p.Y308fs|HOXB3_uc010dbg.2_Frame_Shift_Del_p.Y308fs|HOXB3_uc002ino.2_Frame_Shift_Del_p.Y308fs|HOXB3_uc010wlk.1_Frame_Shift_Del_p.Y176fs|HOXB3_uc010wll.1_Frame_Shift_Del_p.Y235fs	NM_002146	NP_002137	P14651	HXB3_HUMAN	homeobox B3	308					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGGGGCTGGTAGTTGGAGGGC	0.662											OREG0024516	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	62	182	---	---	---	---					
TSSK6	83983	broad.mit.edu	37	19	19625912	19625913	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:19625912_19625913insG	uc002nmr.2	-	1	557_558	c.324_325insC	c.(322-327)CCCGGAfs	p.P108fs	TSSK6_uc002nmq.2_RNA|NDUFA13_uc002nms.2_5'Flank|NDUFA13_uc010xqx.1_5'Flank|NDUFA13_uc010xqy.1_5'Flank	NM_032037	NP_114426	Q9BXA6	TSSK6_HUMAN	testis-specific serine kinase 6	108_109	Protein kinase.				multicellular organismal development|sperm chromatin condensation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			stomach(1)	1						GCCTGAACTCCGGGGATGCGCC	0.634													36	36	---	---	---	---					
LILRB5	10990	broad.mit.edu	37	19	54759955	54759957	+	In_Frame_Del	DEL	GTT	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr19:54759955_54759957delGTT	uc002qex.2	-	4	715_717	c.604_606delAAC	c.(604-606)AACdel	p.N202del	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_In_Frame_Del_p.N193del|LILRB5_uc002qey.2_In_Frame_Del_p.N202del|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	202	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ACACCTGAGGGTTTTTCCTGTAA	0.527													16	77	---	---	---	---					
PHACTR3	116154	broad.mit.edu	37	20	58348385	58348385	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr20:58348385delT	uc002yau.2	+	6	1270	c.803delT	c.(802-804)CTCfs	p.L268fs	PHACTR3_uc002yat.2_Frame_Shift_Del_p.L265fs|PHACTR3_uc010zzw.1_Frame_Shift_Del_p.L227fs|PHACTR3_uc002yav.2_Frame_Shift_Del_p.L227fs|PHACTR3_uc002yaw.2_Frame_Shift_Del_p.L227fs|PHACTR3_uc002yax.2_Frame_Shift_Del_p.L157fs	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	268						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			GACCCTTCCCTCCGGGGCCAG	0.642													65	135	---	---	---	---					
SLC4A7	9497	broad.mit.edu	37	3	27465562	27465564	+	In_Frame_Del	DEL	CCA	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr3:27465562_27465564delCCA	uc003cdv.2	-	8	1274_1276	c.1203_1205delTGG	c.(1201-1206)GGTGGA>GGA	p.401_402GG>G	SLC4A7_uc011awu.1_RNA|SLC4A7_uc011awv.1_RNA|SLC4A7_uc003cdu.3_In_Frame_Del_p.282_283GG>G|SLC4A7_uc011aww.1_In_Frame_Del_p.410_411GG>G|SLC4A7_uc011awx.1_In_Frame_Del_p.397_398GG>G|SLC4A7_uc011awy.1_In_Frame_Del_p.393_394GG>G|SLC4A7_uc011awz.1_RNA|SLC4A7_uc011axa.1_In_Frame_Del_p.282_283GG>G|SLC4A7_uc011axb.1_In_Frame_Del_p.397_398GG>G|SLC4A7_uc010hfm.2_In_Frame_Del_p.282_283GG>G|SLC4A7_uc010hfl.2_In_Frame_Del_p.V4del|SLC4A7_uc003cdw.2_In_Frame_Del_p.277_278GG>G	NM_003615	NP_003606	Q9Y6M7	S4A7_HUMAN	solute carrier family 4, sodium bicarbonate	401_402	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|stereocilium	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|central_nervous_system(1)|skin(1)	5						TTCTCTGCTTCCACCACTTCCAT	0.350													21	98	---	---	---	---					
PDE10A	10846	broad.mit.edu	37	6	165862417	165862417	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr6:165862417delT	uc003qun.2	-	6	606	c.365delA	c.(364-366)AATfs	p.N122fs	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Frame_Shift_Del_p.N52fs|PDE10A_uc003quo.2_Frame_Shift_Del_p.N132fs	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	122	GAF 1.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	GATACTTACATTATTGCACTC	0.338													17	46	---	---	---	---					
GIMAP4	55303	broad.mit.edu	37	7	150269316	150269316	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr7:150269316delG	uc003whl.2	+	3	240	c.158delG	c.(157-159)CGGfs	p.R53fs	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Frame_Shift_Del_p.R67fs	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	53							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATCCTTGGCCGGAAAGTGTTT	0.473													30	76	---	---	---	---					
RBM12B	389677	broad.mit.edu	37	8	94746423	94746424	+	Frame_Shift_Del	DEL	AA	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr8:94746423_94746424delAA	uc003yfz.2	-	3	2408_2409	c.2215_2216delTT	c.(2215-2217)TTCfs	p.F739fs		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	739							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			TGGTCTCCGGAAATGCTCTGGG	0.634													101	214	---	---	---	---					
KIAA1797	54914	broad.mit.edu	37	9	20948332	20948345	+	Frame_Shift_Del	DEL	AAAAGCTGAAGACT	-	-			TCGA-EE-A3J5-06A-11D-A20D-08	TCGA-EE-A3J5-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	b07bad52-d44c-4b27-900a-960985bfadec	c96762c7-78d0-49b8-a731-23b9158a0f5f	g.chr9:20948332_20948345delAAAAGCTGAAGACT	uc003zog.1	+	33	4101_4114	c.3738_3751delAAAAGCTGAAGACT	c.(3736-3753)GGAAAAGCTGAAGACTTGfs	p.G1246fs	KIAA1797_uc003zoh.1_Frame_Shift_Del_p.G682fs	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	1246_1251						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		GTGGACATGGAAAAGCTGAAGACTTGGGCAGCAA	0.374													12	50	---	---	---	---					
