Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF8	943	broad.mit.edu	37	1	12164553	12164553	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:12164553C>T	uc001atq.2	+	4	608	c.386C>T	c.(385-387)TCT>TTT	p.S129F	TNFRSF8_uc010obc.1_Missense_Mutation_p.S18F	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	129	TNFR-Cys 3.|Extracellular (Potential).				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		TTCTTCCATTCTGTCTGTCCG	0.577													26	22					0	0	0.045705	0	0
PRDM2	7799	broad.mit.edu	37	1	14105173	14105173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:14105173G>A	uc001avi.2	+	8	1739	c.883G>A	c.(883-885)GAA>AAA	p.E295K	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.E295K|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Missense_Mutation_p.E52K|PRDM2_uc001avk.2_Missense_Mutation_p.E94K|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	295	Retinoblastoma protein binding.|Asp/Glu-rich (acidic).					Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		cgagggggaagaagaAGCCAG	0.214													22	25					0	0	0.069288	0	0
IGSF21	84966	broad.mit.edu	37	1	18688694	18688694	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:18688694C>T	uc001bau.1	+	5	893	c.510C>T	c.(508-510)TGC>TGT	p.C170C	IGSF21_uc001bav.1_5'UTR	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	170						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CGCTGGTCTGCATCGTGTCTG	0.612													14	19					0	0	0.033300	0	0
SH2D5	400745	broad.mit.edu	37	1	21049315	21049315	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:21049315C>T	uc001bdt.1	-	8	1375	c.750G>A	c.(748-750)GTG>GTA	p.V250V	SH2D5_uc009vpy.1_Silent_p.V334V|SH2D5_uc001bdu.1_RNA	NM_001103160	NP_001096630	Q6ZV89	SH2D5_HUMAN	SH2 domain containing 5 isoform 2	250	SH2.										0		Colorectal(325;3.46e-05)|all_lung(284;5.32e-05)|Lung NSC(340;5.51e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000142)|GBM - Glioblastoma multiforme(114;0.000465)|Kidney(64;0.000476)|STAD - Stomach adenocarcinoma(196;0.00303)|KIRC - Kidney renal clear cell carcinoma(64;0.00634)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		ACTGCGTGCGCACGGACAGAC	0.692													3	7					0	0	0.004672	0	0
EPHB2	2048	broad.mit.edu	37	1	23110990	23110990	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:23110990A>T	uc009vqj.1	+	3	377	c.232A>T	c.(232-234)ATC>TTC	p.I78F	EPHB2_uc001bge.2_Missense_Mutation_p.I78F|EPHB2_uc001bgf.2_Missense_Mutation_p.I78F|EPHB2_uc010odu.1_Missense_Mutation_p.I78F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	78	Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		GACCAAGTTTATCCGGCGCCG	0.577									Hereditary_Prostate_Cancer				15	26					0	0	0.033300	0	0
IL22RA1	58985	broad.mit.edu	37	1	24447897	24447897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:24447897G>A	uc001biq.1	-	7	1162	c.1123C>T	c.(1123-1125)CCA>TCA	p.P375S	IL22RA1_uc010oeg.1_Missense_Mutation_p.P307S|IL22RA1_uc009vrb.1_Missense_Mutation_p.P239S|IL22RA1_uc010oeh.1_Missense_Mutation_p.P375S	NM_021258	NP_067081	Q8N6P7	I22R1_HUMAN	interleukin 22 receptor, alpha 1 precursor	375	Cytoplasmic (Potential).					integral to membrane	interferon receptor activity			skin(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.0007)|Lung NSC(340;0.000992)|all_lung(284;0.00138)|Ovarian(437;0.00348)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-24)|Colorectal(126;6.43e-08)|COAD - Colon adenocarcinoma(152;3.51e-06)|GBM - Glioblastoma multiforme(114;5.06e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00911)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.148)		GCGTAGAATGGGAATTGAGCT	0.617													92	76					0	0	0.048971	0	0
SYF2	25949	broad.mit.edu	37	1	25555608	25555608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:25555608C>T	uc001bjt.1	-	3	194	c.139G>A	c.(139-141)GCT>ACT	p.A47T	SYF2_uc001bju.1_Intron|SYF2_uc010oeo.1_Missense_Mutation_p.A47T	NM_015484	NP_056299	O95926	SYF2_HUMAN	SYF2 homolog, RNA splicing factor isoform 1	47						catalytic step 2 spliceosome					0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-26)|Colorectal(126;2.54e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000455)|STAD - Stomach adenocarcinoma(196;0.000766)|KIRC - Kidney renal clear cell carcinoma(1967;0.00145)|GBM - Glioblastoma multiforme(114;0.00443)|READ - Rectum adenocarcinoma(331;0.0936)|Lung(427;0.201)		AATTTACGAGCTTCATTCTAA	0.383													29	39					0	0	0.037714	0	0
CSMD2	114784	broad.mit.edu	37	1	34011768	34011768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:34011768C>T	uc001bxn.1	-	56	8566	c.8537G>A	c.(8536-8538)CGT>CAT	p.R2846H	CSMD2_uc001bxm.1_Missense_Mutation_p.R2990H	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2846	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GTCCCCCAAACGGATGCCATG	0.567													19	27					0	0	0.069288	0	0
EIF2C4	192670	broad.mit.edu	37	1	36306984	36306984	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:36306984T>C	uc001bzj.1	+	14	2133	c.1943T>C	c.(1942-1944)GTT>GCT	p.V648A		NM_017629	NP_060099	Q9HCK5	AGO4_HUMAN	eukaryotic translation initiation factor 2C, 4	648	Piwi.				mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				ACTAACATGGTTCGAGAGCTG	0.522													3	91					0	0	0.004672	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047337	42047337	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:42047337G>A	uc001cgz.3	-	4	4345	c.3132C>T	c.(3130-3132)TTC>TTT	p.F1044F	HIVEP3_uc001cha.3_Silent_p.F1044F|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1044	No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				GTCTCACCAAGAAGCATTTTC	0.582													23	28					0	0	0.083992	0	0
IPO13	9670	broad.mit.edu	37	1	44426927	44426927	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:44426927C>T	uc001ckx.2	+	14	3132	c.2337C>T	c.(2335-2337)TTC>TTT	p.F779F		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	779					protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				TCACTCTCTTCCAGCAAGGTA	0.582													185	182					0	0	0.048971	0	0
C1orf168	199920	broad.mit.edu	37	1	57216787	57216787	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:57216787G>A	uc001cym.3	-	9	1723	c.1317C>T	c.(1315-1317)GCC>GCT	p.A439A	C1orf168_uc009vzu.1_RNA|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	439										ovary(3)|skin(2)	5						TGTCAATCATGGCCTCTTGCT	0.483													34	33					0	0	0.080422	0	0
C8B	732	broad.mit.edu	37	1	57399065	57399065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:57399065C>T	uc001cyp.2	-	10	1562	c.1495G>A	c.(1495-1497)GAA>AAA	p.E499K	C8B_uc010oon.1_Missense_Mutation_p.E437K|C8B_uc010ooo.1_Missense_Mutation_p.E447K	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	499	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GAACTAACTTCCTTCTGGAAC	0.527													23	33					0	0	0.076483	0	0
SLC44A5	204962	broad.mit.edu	37	1	75707705	75707705	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:75707705C>T	uc001dgu.2	-	9	657	c.513G>A	c.(511-513)GCG>GCA	p.A171A	SLC44A5_uc001dgt.2_Silent_p.A171A|SLC44A5_uc001dgs.2_Silent_p.A129A|SLC44A5_uc001dgr.2_Silent_p.A129A|SLC44A5_uc010oqz.1_Silent_p.A210A|SLC44A5_uc010ora.1_Silent_p.A165A|SLC44A5_uc010orb.1_Silent_p.A41A	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	171	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						TGGGAAAAATCGCTGTTGGAC	0.313													18	54					0	0	0.049695	0	0
PTGFR	5737	broad.mit.edu	37	1	78959017	78959017	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:78959017G>A	uc001din.2	+	2	855	c.589G>A	c.(589-591)GAA>AAA	p.E197K	PTGFR_uc001dim.2_Missense_Mutation_p.E197K	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	197	Extracellular (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	CAAAGACTGGGAAGATAGATT	0.403													46	27					0	0	0.042209	0	0
ABCA4	24	broad.mit.edu	37	1	94564545	94564545	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:94564545G>A	uc001dqh.2	-	6	677	c.573C>T	c.(571-573)TTC>TTT	p.F191F	ABCA4_uc010otn.1_Silent_p.F191F	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	191	Extracellular.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CTCCATGAGCGAACTGCAGGG	0.448													9	14					0	0	0.047766	0	0
CHI3L2	1117	broad.mit.edu	37	1	111778306	111778306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:111778306G>A	uc001eam.2	+	6	597	c.526G>A	c.(526-528)GAA>AAA	p.E176K	CHI3L2_uc001ean.2_Missense_Mutation_p.E166K|CHI3L2_uc001eao.2_Missense_Mutation_p.E97K|CHI3L2_uc009wga.2_Missense_Mutation_p.E97K	NM_004000	NP_003991	Q15782	CH3L2_HUMAN	chitinase 3-like 2 isoform a	176					chitin catabolic process	extracellular space	cation binding|chitinase activity			central_nervous_system(1)	1		all_cancers(81;1.89e-05)|all_epithelial(167;7.36e-06)|all_lung(203;0.00018)|Lung NSC(277;0.000359)		Lung(183;0.0171)|Colorectal(144;0.0387)|all cancers(265;0.0464)|LUSC - Lung squamous cell carcinoma(189;0.0872)|Epithelial(280;0.0994)|COAD - Colon adenocarcinoma(174;0.141)		ATCCACCAAGGAAAGGCTTCT	0.448													27	49					0	0	0.030593	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			132	108					0	0	0.048971	0	0
NUP210L	91181	broad.mit.edu	37	1	154112302	154112302	+	Silent	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:154112302A>G	uc001fdw.2	-	5	765	c.693T>C	c.(691-693)GTT>GTC	p.V231V	NUP210L_uc010peh.1_Silent_p.V231V	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	231						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CATGAATTCGAACTTTTACAA	0.363													159	156					0	0	0.048971	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577107	158577107	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:158577107G>A	uc010pio.1	+	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					ATAGTCTAAGGAATAGGGCTA	0.463													104	111					0	0	0.048971	0	0
OR6N1	128372	broad.mit.edu	37	1	158735840	158735840	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:158735840G>A	uc010piq.1	-	1	633	c.633C>T	c.(631-633)TTC>TTT	p.F211F		NM_001005185	NP_001005185	Q8NGY5	OR6N1_HUMAN	olfactory receptor, family 6, subfamily N,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GGATCAGCAGGAAGGTGGCTA	0.493													43	60					0	0	0.048971	0	0
OR10J3	441911	broad.mit.edu	37	1	159284414	159284414	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:159284414G>A	uc010piu.1	-	1	36	c.36C>T	c.(34-36)TTC>TTT	p.F12F		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					CTTCAAAGAGGAACTCAGTCA	0.423													77	88					0	0	0.048971	0	0
SLAMF7	57823	broad.mit.edu	37	1	160720152	160720152	+	Silent	SNP	C	T	T	rs144271994		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:160720152C>T	uc001fwq.2	+	4	723	c.708C>T	c.(706-708)CTC>CTT	p.L236L	SLAMF7_uc010pjn.1_Silent_p.L142L|SLAMF7_uc001fws.2_Silent_p.L129L|SLAMF7_uc001fwr.2_Silent_p.L236L|SLAMF7_uc010pjo.1_Intron|SLAMF7_uc010pjp.1_Intron|SLAMF7_uc010pjq.1_Intron|SLAMF7_uc010pjr.1_Intron	NM_021181	NP_067004	Q9NQ25	SLAF7_HUMAN	SLAM family member 7	236	Helical; (Potential).				cell adhesion|natural killer cell activation|natural killer cell mediated cytotoxicity	integral to membrane	receptor activity			skin(2)|ovary(1)	3	all_cancers(52;2.63e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			TGGTGCCCCTCCTGCTCAGTC	0.502													87	98					0	0	0.048971	0	0
HSPA6	3310	broad.mit.edu	37	1	161495526	161495526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:161495526G>A	uc001gap.2	+	2	1738	c.1078G>A	c.(1078-1080)GAG>AAG	p.E360K	HSPA6_uc001gaq.2_Missense_Mutation_p.E360K	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	360					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CAACGGCAAGGAGCTGAACAA	0.577													16	15					0	0	0.043863	0	0
HSPA7	3311	broad.mit.edu	37	1	161577159	161577159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:161577159G>A	uc010pkp.1	+	1	1311	c.1079G>A	c.(1078-1080)GGA>GAA	p.G360E		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						CAACGGCAAGGAGCTGAACAA	0.572													7	23					0	0	0.038395	0	0
BRP44	25874	broad.mit.edu	37	1	167887567	167887567	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:167887567G>A	uc001ges.2	-	5	679	c.378C>T	c.(376-378)CAC>CAT	p.H126H	BRP44_uc001get.2_Silent_p.H126H|BRP44_uc001geu.2_Silent_p.H126H	NM_015415	NP_056230	O95563	BR44_HUMAN	brain protein 44	126						mitochondrion					0	all_hematologic(923;0.215)			KIRC - Kidney renal clear cell carcinoma(1967;0.247)		TCTTTTATTTGTGTGCTTTAG	0.308													19	18					0	0	0.076483	0	0
SELE	6401	broad.mit.edu	37	1	169699572	169699572	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:169699572C>T	uc001ggm.3	-	5	872	c.715_splice	c.e5+1	p.V239_splice	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor						actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					GAGGGATTTACCATTGCAGGC	0.438													34	68					0	0	0.086207	0	0
FASLG	356	broad.mit.edu	37	1	172628636	172628636	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:172628636C>T	uc001gis.2	+	1	452	c.295C>T	c.(295-297)CTG>TTG	p.L99L	FASLG_uc001git.2_Silent_p.L99L	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	99	Helical; Signal-anchor for type II membrane protein; (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						AGGATTGGGCCTGGGGATGTT	0.517													11	18					0	0	0.028581	0	0
TNFSF18	8995	broad.mit.edu	37	1	173010511	173010511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:173010511G>A	uc001giu.2	-	3	597	c.596C>T	c.(595-597)TCC>TTC	p.S199F		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,	199	Extracellular (Potential).				anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						AAGTCTCTAGGAGATGAATTG	0.408													13	19					0	0	0.020292	0	0
TNR	7143	broad.mit.edu	37	1	175372638	175372639	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:175372638_175372639GG>AA	uc001gkp.1	-	2	694_695	c.613_614CC>TT	c.(613-615)CCG>TTG	p.P205L	TNR_uc009wwu.1_Missense_Mutation_p.P205L|TNR_uc010pmz.1_Missense_Mutation_p.P205L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	205	Cys-rich.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCAACCCAGCGGGCAGTAGGGC	0.594													135	167					0	0	0.004672	0	0
C1orf125	126859	broad.mit.edu	37	1	179338084	179338084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:179338084C>T	uc001gmo.2	+	3	374	c.247C>T	c.(247-249)CCT>TCT	p.P83S	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Intron|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.P83S	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	83											0						CTTACTACCTCCTAAGAAAAT	0.373													27	28					0	0	0.037714	0	0
MFSD4	148808	broad.mit.edu	37	1	205549915	205549915	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:205549915C>T	uc001hcv.3	+	3	642	c.556C>T	c.(556-558)CAT>TAT	p.H186Y	MFSD4_uc010prk.1_Intron|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Missense_Mutation_p.H131Y	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	186					transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			CCACCTGTTCCATGTCTCCAG	0.617													35	35					0	0	0.074837	0	0
SLC45A3	85414	broad.mit.edu	37	1	205628503	205628503	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:205628503G>A	uc001hda.1	-	5	1860	c.1521C>T	c.(1519-1521)TCC>TCT	p.S507S	SLC45A3_uc010prn.1_Intron|SLC45A3_uc010pro.1_Intron|SLC45A3_uc010prp.1_Intron|ELK4_uc010prq.1_Intron	NM_033102	NP_149093	Q96JT2	S45A3_HUMAN	prostein	507					transmembrane transport	integral to membrane			SLC45A3/BRAF(2)	ovary(2)|prostate(2)	4	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			CCATAAACAGGGATGGGGCCA	0.622			T	ETV1|ETV5|ELK4|ERG	prostate 						OREG0014161	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	24	43					0	0	0.099896	0	0
USH2A	7399	broad.mit.edu	37	1	215844436	215844436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:215844436C>T	uc001hku.1	-	64	14398	c.14011G>A	c.(14011-14013)GAA>AAA	p.E4671K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4671	Fibronectin type-III 32.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTGTATAATTCGTAATACAAA	0.418										HNSCC(13;0.011)			33	45					0	0	0.050027	0	0
USH2A	7399	broad.mit.edu	37	1	216348630	216348630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:216348630G>A	uc001hku.1	-	21	4978	c.4591C>T	c.(4591-4593)CCC>TCC	p.P1531S	USH2A_uc001hkv.2_Missense_Mutation_p.P1531S	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1531	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTGGAGCTGGGAAATTTACAA	0.403										HNSCC(13;0.011)			14	18					0	0	0.020292	0	0
OR6F1	343169	broad.mit.edu	37	1	247875287	247875287	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr1:247875287G>A	uc001idj.1	-	1	771	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGACGTGAAGGAAAACTGTGG	0.527													43	52					0	0	0.104719	0	0
ADARB2	105	broad.mit.edu	37	10	1284223	1284223	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:1284223G>A	uc009xhq.2	-	5	1706	c.1332C>T	c.(1330-1332)TTC>TTT	p.F444F		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	444	A to I editase.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		GCGTGTAGAGGAAGTGCAGGA	0.706													3	14					0	0	0.004672	0	0
ANKRD16	54522	broad.mit.edu	37	10	5920177	5920177	+	Silent	SNP	A	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:5920177A>T	uc010qat.1	-	7	1545	c.1002T>A	c.(1000-1002)TCT>TCA	p.S334S	ANKRD16_uc009xie.2_Intron|ANKRD16_uc009xif.2_Silent_p.S334S|ANKRD16_uc001iiq.2_3'UTR	NM_019046	NP_061919	Q6P6B7	ANR16_HUMAN	ankyrin repeat domain 16 isoform a	334	ANK 9.										0						TGATGTCTTCAGAATCCTTCA	0.557													42	74					0	0	0.098360	0	0
ITIH5	80760	broad.mit.edu	37	10	7679270	7679270	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:7679270G>A	uc001ijq.2	-	5	652	c.573C>T	c.(571-573)ATC>ATT	p.I191I	ITIH5_uc001ijr.1_Silent_p.I191I	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	191					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CGCTCTCCAGGATATTCACGT	0.652													54	39					0	0	0.048971	0	0
CAMK1D	57118	broad.mit.edu	37	10	12870827	12870827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:12870827G>A	uc001ilo.2	+	11	1334	c.1099G>A	c.(1099-1101)GGA>AGA	p.G367R		NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	367						calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		CTCAGGAGTTGGAGCCGAGCG	0.622													38	13					0	0	0.042209	0	0
PRPF18	8559	broad.mit.edu	37	10	13629110	13629110	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:13629110C>T	uc001imp.2	+	1	172	c.24C>T	c.(22-24)ATC>ATT	p.I8I	PRPF18_uc001imq.2_RNA	NM_003675	NP_003666	Q99633	PRP18_HUMAN	PRP18 pre-mRNA processing factor 18 homolog	8					mRNA processing|RNA splicing	nuclear speck|spliceosomal complex				central_nervous_system(1)	1						AATCAGAGATCCTTCGGAAGC	0.612													76	55					0	0	0.048971	0	0
THNSL1	79896	broad.mit.edu	37	10	25313734	25313734	+	Nonsense_Mutation	SNP	C	T	T	rs139395919	by1000genomes	TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:25313734C>T	uc001isi.3	+	3	1911	c.1582C>T	c.(1582-1584)CGA>TGA	p.R528*	ENKUR_uc001ish.1_Intron	NM_024838	NP_079114	Q8IYQ7	THNS1_HUMAN	threonine synthase-like 1	528					threonine biosynthetic process		ATP binding|pyridoxal phosphate binding|shikimate kinase activity|threonine synthase activity			pancreas(1)	1					L-Threonine(DB00156)|Pyridoxal Phosphate(DB00114)	AATCCCGATTCGAAAATTTAT	0.363													28	51					0	0	0.080422	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37430789	37430789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:37430789G>A	uc001iza.1	+	7	895	c.796G>A	c.(796-798)GAA>AAA	p.E266K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	322						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAGCTTGGTGGAAAAAACACC	0.478													12	34					0	0	0.020292	0	0
RBP3	5949	broad.mit.edu	37	10	48390024	48390024	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:48390024G>A	uc001jez.2	-	1	968	c.854C>T	c.(853-855)TCC>TTC	p.S285F		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	285	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GGGCCCCAGGGACCTGGACAC	0.701													10	6					0	0	0.080935	0	0
Unknown	0	broad.mit.edu	37	10	48968566	48968566	+	RNA	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:48968566A>G	uc001jgc.1	+	3		c.1234A>G								full-length cDNA clone CS0DI009YC01 of Placenta Cot 25-normalized of Homo sapiens (human).																		ACAGGATAACAAACTGGAAAA	0.284													5	25					0	0	0.014758	0	0
FRMPD2	143162	broad.mit.edu	37	10	49448473	49448473	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:49448473C>T	uc001jgi.2	-	6	737	c.630G>A	c.(628-630)AGG>AGA	p.R210R	FRMPD2_uc001jgh.2_Silent_p.R179R|FRMPD2_uc001jgj.2_Silent_p.R188R	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	210					tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		GCAGCCTCTTCCTGAGCAGGT	0.587													12	21					0	0	0.093190	0	0
PCDH15	65217	broad.mit.edu	37	10	55566486	55566486	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:55566486C>T	uc010qhq.1	-	36	5297	c.4902G>A	c.(4900-4902)CTG>CTA	p.L1634L	PCDH15_uc010qhr.1_Silent_p.L1629L	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CTGTGCTTTTCAGCCTGTTCC	0.443										HNSCC(58;0.16)			94	74					0	0	0.048971	0	0
PCDH15	65217	broad.mit.edu	37	10	55568560	55568560	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:55568560C>T	uc010qhs.1	-	37	5660	c.5265G>A	c.(5263-5265)CAG>CAA	p.Q1755Q	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Silent_p.Q1748Q|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GACCTCCAGACTGACTTTCGC	0.498										HNSCC(58;0.16)			9	4					0	0	0.080935	0	0
VPS26A	9559	broad.mit.edu	37	10	70916829	70916829	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:70916829G>A	uc001jpb.2	+	4	422	c.296G>A	c.(295-297)GGA>GAA	p.G99E	VPS26A_uc001jpc.2_Missense_Mutation_p.G99E|VPS26A_uc009xqa.2_Missense_Mutation_p.G92E|VPS26A_uc001jpd.2_5'UTR	NM_004896	NP_004887	O75436	VP26A_HUMAN	vacuolar protein sorting 26 A isoform 1	99					retrograde transport, endosome to Golgi|vacuolar transport	cytosol|endosome membrane|retromer complex|vesicle	protein binding|protein transporter activity				0						GCCTTACCTGGAGAACTGACT	0.348													11	38					0	0	0.080935	0	0
CC2D2B	387707	broad.mit.edu	37	10	97772304	97772304	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:97772304G>A	uc001kll.2	+	4	335	c.136G>A	c.(136-138)GAG>AAG	p.E46K	uc001klg.1_Intron|uc001klj.1_Intron|CC2D2B_uc001klk.2_Intron|CC2D2B_uc010qop.1_Missense_Mutation_p.E46K	NM_001001732	NP_001001732	Q6DHV5	C2D2B_HUMAN	coiled-coil and C2 domain containing 2B isoform	46										ovary(1)	1		Colorectal(252;0.158)		Epithelial(162;7.08e-08)|all cancers(201;2.71e-06)		AGATCAAACAGAGGTCTTGCA	0.313													10	15					0	0	0.080935	0	0
CNNM2	54805	broad.mit.edu	37	10	104679626	104679626	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:104679626C>T	uc001kwm.2	+	1	1513	c.1389C>T	c.(1387-1389)GCC>GCT	p.A463A	CNNM2_uc001kwn.2_Silent_p.A463A|CNNM2_uc001kwl.2_Silent_p.A463A	NM_017649	NP_060119	Q9H8M5	CNNM2_HUMAN	cyclin M2 isoform 1	463	CBS 1.				ion transport	integral to membrane				ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.103)|all_hematologic(284;0.152)|Breast(234;0.198)		Epithelial(162;7.89e-09)|all cancers(201;1.82e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		CCGGCGAAGCCATCCTGGACT	0.577													18	21					0	0	0.049695	0	0
CPXM2	119587	broad.mit.edu	37	10	125557523	125557523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:125557523C>T	uc001lhk.1	-	6	1183	c.858G>A	c.(856-858)ATG>ATA	p.M286I	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	286	F5/8 type C.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TCTCCATTCTCATGCAGATGC	0.557													30	22					0	0	0.054565	0	0
MKI67	4288	broad.mit.edu	37	10	129914209	129914209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:129914209G>A	uc001lke.2	-	7	658	c.463C>T	c.(463-465)CCT>TCT	p.P155S	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	155					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				TGTACCTGAGGATTTCCTGAA	0.383													30	45					0	0	0.037714	0	0
KNDC1	85442	broad.mit.edu	37	10	135015287	135015287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr10:135015287C>T	uc001llz.1	+	17	3273	c.3272C>T	c.(3271-3273)CCC>CTC	p.P1091L	KNDC1_uc001lma.1_Missense_Mutation_p.P1026L|KNDC1_uc001lmb.1_Missense_Mutation_p.P503L	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1091					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		AGCTGCAGCCCCGGCTGGTGC	0.721													3	4					0	0	0.009096	0	0
C11orf35	256329	broad.mit.edu	37	11	558970	558970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:558970G>A	uc001lpx.2	-	2	107	c.44C>T	c.(43-45)TCG>TTG	p.S15L	uc001lpy.2_RNA|uc001lpz.2_5'Flank|RASSF7_uc001lqa.2_5'Flank|RASSF7_uc001lqb.2_5'Flank|RASSF7_uc001lqc.2_5'Flank|RASSF7_uc001lqd.2_5'Flank	NM_173573	NP_775844	Q8IXW0	CK035_HUMAN	hypothetical protein LOC256329	15										pancreas(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.18e-28)|Epithelial(43;6.93e-27)|OV - Ovarian serous cystadenocarcinoma(40;6.97e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACCACTGACCGACTCTTGCTC	0.652													21	0					0	0	0.091800	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653314	55653314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:55653314G>A	uc010rip.1	+	2	502	c.410G>A	c.(409-411)CGG>CAG	p.R137Q	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	137						intracellular	zinc ion binding				0		all_epithelial(135;0.226)				GAGGAACGCCGGGTAAGTGAT	0.488													12	13					0	0	0.105934	0	0
OR9I1	219954	broad.mit.edu	37	11	57886005	57886005	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:57886005G>A	uc001nml.1	-	1	912	c.912C>T	c.(910-912)GTC>GTT	p.V304V	OR9Q1_uc001nmj.2_Intron	NM_001005211	NP_001005211	Q8NGQ6	OR9I1_HUMAN	olfactory receptor, family 9, subfamily I,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.V304V(1)		pancreas(1)	1		Breast(21;0.0589)				GTCTCCTAGCGACCTTTCTGA	0.428													41	24					0	0	0.048971	0	0
TMEM109	79073	broad.mit.edu	37	11	60689555	60689555	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:60689555G>C	uc001nqg.2	+	4	1028	c.650G>C	c.(649-651)CGA>CCA	p.R217P	TMEM109_uc001nqh.2_Missense_Mutation_p.R217P|TMEM132A_uc001nqi.2_5'Flank|TMEM132A_uc001nqj.2_5'Flank	NM_024092	NP_076997	Q9BVC6	TM109_HUMAN	transmembrane protein 109 precursor	217						integral to membrane|nuclear outer membrane|sarcoplasmic reticulum membrane					0						GCCAAGGTGCGAGGGCTGGAA	0.706													7	18					0	0	0.058154	0	0
SLC22A25	387601	broad.mit.edu	37	11	62996983	62996983	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:62996983G>A	uc001nwr.1	-	1	142	c.142C>T	c.(142-144)CGC>TGC	p.R48C	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.R48C	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	48	Extracellular (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						ACCCAGCAGCGATGATCAAGT	0.468													18	64					0	0	0.062417	0	0
BATF2	116071	broad.mit.edu	37	11	64757232	64757232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:64757232G>A	uc001ocf.1	-	3	325	c.194C>T	c.(193-195)TCC>TTC	p.S65F	BATF2_uc001oce.1_5'UTR	NM_138456	NP_612465	Q8N1L9	BATF2_HUMAN	basic leucine zipper transcription factor,	65	Leucine-zipper.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGCCTGCAGGGACTGGATCTC	0.652													11	28					0	0	0.105934	0	0
TBC1D10C	374403	broad.mit.edu	37	11	67171762	67171762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:67171762G>A	uc001ola.2	+	2	118	c.89G>A	c.(88-90)GGG>GAG	p.G30E	PPP1CA_uc009yro.1_5'Flank|PPP1CA_uc001okt.1_5'Flank|PPP1CA_uc001oku.1_5'Flank|PPP1CA_uc001okv.1_5'Flank|PPP1CA_uc001okw.1_5'Flank|PPP1CA_uc001okx.1_Intron|PPP1CA_uc001oky.2_5'Flank|TBC1D10C_uc001okz.2_Missense_Mutation_p.G30E|TBC1D10C_uc001olb.2_RNA	NM_198517	NP_940919	Q8IV04	TB10C_HUMAN	TBC1 domain family, member 10C	30						intracellular	Rab GTPase activator activity				0			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)			GAGCTCAGCGGGCCTGGCCCA	0.687													19	8					0	0	0.062417	0	0
C2CD3	26005	broad.mit.edu	37	11	73829377	73829377	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:73829377G>A	uc001ouu.2	-	9	1643	c.1416C>T	c.(1414-1416)GTC>GTT	p.V472V	C2CD3_uc001ouv.2_Silent_p.V472V	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	472						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					TTTTAGAAGGGACGATATCAT	0.423													21	42					0	0	0.062417	0	0
ODZ4	26011	broad.mit.edu	37	11	78449574	78449574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:78449574C>T	uc001ozl.3	-	20	3261	c.2798G>A	c.(2797-2799)GGA>GAA	p.G933E		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	933	Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CAGGGGGGTTCCATCTGATGT	0.473													23	15					0	0	0.034045	0	0
HEPHL1	341208	broad.mit.edu	37	11	93754581	93754581	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:93754581T>G	uc001pep.2	+	1	204	c.47T>G	c.(46-48)CTG>CGG	p.L16R		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	16					copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CTCACATTCCTGGGTCTGTCT	0.502													22	46					0	0	0.091800	0	0
CD3G	917	broad.mit.edu	37	11	118220644	118220644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:118220644G>A	uc001psu.2	+	3	346	c.266G>A	c.(265-267)GGA>GAA	p.G89E	CD3G_uc009zaa.1_Missense_Mutation_p.G29E	NM_000073	NP_000064	P09693	CD3G_HUMAN	CD3G antigen, gamma polypeptide precursor	89	Extracellular (Potential).|Ig-like.				establishment or maintenance of cell polarity|protein complex assembly|protein transport|regulation of apoptosis|T cell activation|T cell costimulation|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	protein heterodimerization activity|receptor signaling complex scaffold activity|T cell receptor binding|transmembrane receptor activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		CAGTGTAAAGGATCACAGAAC	0.388													22	48					0	0	0.108266	0	0
MLL	4297	broad.mit.edu	37	11	118362611	118362611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:118362611C>T	uc001pta.2	+	15	4986	c.4963C>T	c.(4963-4965)CGG>TGG	p.R1655W	MLL_uc001ptb.2_Missense_Mutation_p.R1658W|MLL_uc001pte.1_RNA	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	1655					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GTTGAATTCTCGGACTACCAG	0.468			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								14	13					0	0	0.105934	0	0
DPAGT1	1798	broad.mit.edu	37	11	118969160	118969160	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:118969160G>A	uc001pvi.2	-	5	1101	c.681C>T	c.(679-681)TTC>TTT	p.F227F	H2AFX_uc001pvg.2_5'Flank|DPAGT1_uc001pvj.2_Silent_p.F120F|DPAGT1_uc009zaq.2_RNA|DPAGT1_uc001pvk.2_Silent_p.F55F|DPAGT1_uc010ryz.1_Silent_p.F227F|DPAGT1_uc001pvm.1_Silent_p.F120F|DPAGT1_uc010rza.1_Silent_p.F120F	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	227	Dolichol recognition.|Helical; (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)		AGGGTATCATGAAGTAGAGGG	0.443													30	58					0	0	0.064281	0	0
OR8D1	283159	broad.mit.edu	37	11	124180299	124180299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr11:124180299G>A	uc010sag.1	-	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GCAACATAGCGATCATATGCC	0.488													10	12					0	0	0.080935	0	0
B4GALNT3	283358	broad.mit.edu	37	12	662547	662547	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:662547G>A	uc001qii.1	+	14	1458	c.1458G>A	c.(1456-1458)CTG>CTA	p.L486L	B4GALNT3_uc001qij.1_Silent_p.L389L|B4GALNT3_uc001qik.1_Silent_p.L35L	NM_173593	NP_775864	Q6L9W6	B4GN3_HUMAN	beta	486	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			ovary(1)|skin(1)	2	all_cancers(10;0.0158)|all_epithelial(11;0.0274)|Ovarian(42;0.0512)|all_lung(10;0.154)|Lung NSC(10;0.215)		OV - Ovarian serous cystadenocarcinoma(31;0.00018)|BRCA - Breast invasive adenocarcinoma(9;0.0262)			GGGAGGGCCTGCTGGCCCCCT	0.627													41	48					0	0	0.111260	0	0
C1R	715	broad.mit.edu	37	12	7241545	7241545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:7241545C>T	uc010sfy.1	-	6	865	c.806G>A	c.(805-807)GGG>GAG	p.G269E	C1R_uc010sfz.1_Missense_Mutation_p.G283E|C1R_uc010sga.1_Missense_Mutation_p.G235E	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	269	CUB 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCTTTGCTTCCCACAGAACTC	0.547													5	7					0	0	0.014758	0	0
CD163L1	283316	broad.mit.edu	37	12	7522093	7522093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:7522093G>A	uc001qsy.2	-	15	3925	c.3899C>T	c.(3898-3900)TCG>TTG	p.S1300L	CD163L1_uc010sge.1_Missense_Mutation_p.S1310L	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1300	SRCR 12.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						CTGGCCAAACGAAGCGTCCCT	0.587													65	65					0	0	0.048971	0	0
LMO3	55885	broad.mit.edu	37	12	16753611	16753612	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:16753611_16753612GG>AT	uc001rdk.1	-	2	623_624	c.183_184CC>AT	c.(181-186)ATCCTT>ATATTT	p.L62F	LMO3_uc001rdj.1_Missense_Mutation_p.L73F|LMO3_uc010shy.1_Missense_Mutation_p.L80F|LMO3_uc001rdl.1_Missense_Mutation_p.L62F|LMO3_uc009zii.1_RNA|LMO3_uc010shz.1_Intron|LMO3_uc001rdm.1_Missense_Mutation_p.L62F|LMO3_uc001rdo.1_Intron|LMO3_uc001rdp.1_Intron|LMO3_uc001rdn.1_Missense_Mutation_p.L62F|LMO3_uc009zij.1_RNA|LMO3_uc009zik.1_RNA	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3	62	LIM zinc-binding 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				CTGCGACAAAGGATAAGATTAG	0.45													24	34					0	0	0.004672	0	0
PDE3A	5139	broad.mit.edu	37	12	20774298	20774298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:20774298C>T	uc001reh.1	+	5	1515	c.1493C>T	c.(1492-1494)GCT>GTT	p.A498V		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	498					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TCATCCTATGCTATTTCTGCA	0.398													18	21					0	0	0.062417	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48137388	48137388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:48137388C>T	uc009zkp.2	-	17	2064	c.1624G>A	c.(1624-1626)GAG>AAG	p.E542K	RAPGEF3_uc001rpw.2_5'Flank|RAPGEF3_uc001rpx.2_5'UTR|RAPGEF3_uc010sln.1_Intron|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Missense_Mutation_p.E542K|RAPGEF3_uc001rpz.3_Missense_Mutation_p.E584K	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	542					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		GCCATCACCTCTCTCACGGAG	0.607													42	64					0	0	0.098360	0	0
OR8S1	341568	broad.mit.edu	37	12	48919933	48919933	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:48919933C>T	uc010slu.1	+	1	519	c.519C>T	c.(517-519)ATC>ATT	p.I173I		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AAGCCAAAATCATTCACCACT	0.507													53	58					0	0	0.048971	0	0
ACVRL1	94	broad.mit.edu	37	12	52309829	52309829	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:52309829T>G	uc001rzj.2	+	8	1341	c.1058T>G	c.(1057-1059)GTG>GGG	p.V353G	ACVRL1_uc001rzk.2_Missense_Mutation_p.V353G|ACVRL1_uc010snm.1_Missense_Mutation_p.V179G	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	353	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	GGCCTGGCTGTGATGCACTCA	0.632									Hereditary_Hemorrhagic_Telangiectasia				68	66					0	0	0.048971	0	0
TENC1	23371	broad.mit.edu	37	12	53452406	53452406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:53452406C>T	uc001sbp.2	+	16	1411	c.1276C>T	c.(1276-1278)CCC>TCC	p.P426S	TENC1_uc001sbl.2_Missense_Mutation_p.P302S|TENC1_uc001sbn.2_Missense_Mutation_p.P436S|TENC1_uc001sbq.2_5'UTR|TENC1_uc001sbr.2_RNA|TENC1_uc009zmr.2_5'Flank	NM_170754	NP_736610	Q63HR2	TENC1_HUMAN	tensin like C1 domain containing phosphatase	426					intracellular signal transduction|negative regulation of cell proliferation	focal adhesion	metal ion binding|phosphoprotein phosphatase activity|protein binding			ovary(1)|pancreas(1)	2						CTCCTCCAGCCCCGAGAAGAT	0.607													27	25					0	0	0.030593	0	0
KIAA0748	9840	broad.mit.edu	37	12	55355009	55355009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:55355009G>A	uc001sgn.3	-	10	1620	c.1510C>T	c.(1510-1512)CCC>TCC	p.P504S	KIAA0748_uc001sgl.3_Missense_Mutation_p.P366S|KIAA0748_uc001sgm.3_Missense_Mutation_p.P251S|KIAA0748_uc010spb.1_Missense_Mutation_p.P251S|KIAA0748_uc010spc.1_Missense_Mutation_p.P366S|KIAA0748_uc010spd.1_Missense_Mutation_p.P504S|KIAA0748_uc001sgo.3_RNA	NM_001098815	NP_001092285	A2RU30	K0748_HUMAN	hypothetical protein LOC9840	504										ovary(1)|central_nervous_system(1)	2						GGTCTGCTGGGCCAGCGACTC	0.512													113	122					0	0	0.048971	0	0
OR6C6	283365	broad.mit.edu	37	12	55688965	55688965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:55688965C>T	uc010sph.1	-	1	52	c.52G>A	c.(52-54)GAC>AAC	p.D18N		NM_001005493	NP_001005493	A6NF89	OR6C6_HUMAN	olfactory receptor, family 6, subfamily C,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|skin(1)	2						AACTGTGGGTCATCTGTCAAT	0.378													25	26					0	0	0.041601	0	0
OR6C68	403284	broad.mit.edu	37	12	55886782	55886782	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:55886782C>T	uc010spo.1	+	1	636	c.636C>T	c.(634-636)ATC>ATT	p.I212I		NM_001005519	NP_001005519	A6NDL8	O6C68_HUMAN	olfactory receptor, family 6, subfamily C,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CCTTTATTATCACTCTTGTAT	0.348													10	14					0	0	0.058154	0	0
DCTN2	10540	broad.mit.edu	37	12	57929324	57929324	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:57929324G>A	uc001som.1	-	4	339	c.207C>T	c.(205-207)TTC>TTT	p.F69F	DCTN2_uc009zpu.1_Silent_p.F74F|DCTN2_uc009zpv.1_5'UTR|DCTN2_uc009zpw.1_5'UTR|DCTN2_uc001soo.1_RNA|DCTN2_uc001son.1_5'UTR|DCTN2_uc001sop.1_5'UTR|DCTN2_uc001soq.1_RNA|DCTN2_uc009zpx.1_Silent_p.F69F	NM_006400	NP_006391	Q13561	DCTN2_HUMAN	dynactin 2	69					cell proliferation|G2/M transition of mitotic cell cycle|mitosis	centrosome|cytosol|dynactin complex|dynein complex|kinetochore|membrane|microtubule|vesicle	motor activity|protein binding			ovary(1)	1						TACGATCTGAGAAATCTGCCA	0.448													39	66					0	0	0.111260	0	0
TSPAN8	7103	broad.mit.edu	37	12	71531935	71531935	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:71531935C>T	uc009zrt.1	-	4	498	c.336_splice	c.e4+1	p.K112_splice	TSPAN8_uc001swk.1_Splice_Site_p.K112_splice|TSPAN8_uc001swj.1_Splice_Site_p.K112_splice	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3						protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			TGTGCACACACCTTAGATTTG	0.358													72	101					0	0	0.048971	0	0
RASSF9	9182	broad.mit.edu	37	12	86199302	86199302	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:86199302C>T	uc001taf.1	-	2	825	c.486G>A	c.(484-486)AGG>AGA	p.R162R		NM_005447	NP_005438	O75901	RASF9_HUMAN	Ras association (RalGDS/AF-6) domain family	162					endosome transport|protein targeting|signal transduction	cytosol|endosome|trans-Golgi network transport vesicle membrane	protein binding|transporter activity			ovary(1)	1						GGAAAGTTTTCCTGACTATTC	0.388													59	72					0	0	0.048971	0	0
GIT2	9815	broad.mit.edu	37	12	110370892	110370892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:110370892G>A	uc001tps.2	-	20	2336	c.2171C>T	c.(2170-2172)TCA>TTA	p.S724L	TCHP_uc001tpo.1_Intron|GIT2_uc001tpr.2_3'UTR|GIT2_uc001tpq.2_Missense_Mutation_p.S694L|GIT2_uc001tpv.2_Missense_Mutation_p.S646L|GIT2_uc001tpu.2_Missense_Mutation_p.S644L|GIT2_uc001tpt.2_Missense_Mutation_p.S596L|GIT2_uc010sxu.1_Missense_Mutation_p.S632L	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	724					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						GTCTGTGGGTGAGCCGGGGTc	0.323													22	15					0	0	0.062417	0	0
RNFT2	84900	broad.mit.edu	37	12	117217093	117217093	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:117217093C>T	uc009zwn.2	+	7	1055	c.822C>T	c.(820-822)ACC>ACT	p.T274T	RNFT2_uc001twb.3_Silent_p.T274T|RNFT2_uc001twa.3_Silent_p.T184T|RNFT2_uc001twc.3_Silent_p.T22T	NM_001109903	NP_001103373	Q96EX2	RNFT2_HUMAN	transmembrane protein 118 isoform 1	274	Helical; (Potential).					integral to membrane	zinc ion binding				0	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.034)		AGTACATCACCATCGCCCTCA	0.557													59	52					0	0	0.048971	0	0
MLXIP	22877	broad.mit.edu	37	12	122618162	122618162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:122618162C>T	uc001ubq.2	+	9	1360	c.1360C>T	c.(1360-1362)CCT>TCT	p.P454S	MLXIP_uc001ubr.2_Missense_Mutation_p.P205S|MLXIP_uc001ubs.1_Missense_Mutation_p.P61S|MLXIP_uc001ubt.2_Missense_Mutation_p.P61S	NM_014938	NP_055753	Q9HAP2	MLXIP_HUMAN	MLX interacting protein	454					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial outer membrane|nucleus	DNA binding			ovary(2)	2	all_neural(191;0.0837)|Medulloblastoma(191;0.163)	Lung NSC(355;0.0659)		OV - Ovarian serous cystadenocarcinoma(86;0.000599)|Epithelial(86;0.00102)|BRCA - Breast invasive adenocarcinoma(302;0.233)		ACCATTAGTTCCTCCTCCTGC	0.632													18	17					0	0	0.055883	0	0
MTUS2	23281	broad.mit.edu	37	13	29599814	29599814	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr13:29599814G>A	uc001usl.3	+	1	1067	c.1009G>A	c.(1009-1011)GCC>ACC	p.A337T		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	327						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						GGGAAAGGCAGCCCAGGAAGG	0.542													29	37					0	0	0.045705	0	0
NBEA	26960	broad.mit.edu	37	13	35733690	35733690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr13:35733690C>T	uc001uvb.2	+	23	3588	c.3382C>T	c.(3382-3384)CCA>TCA	p.P1128S	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1128						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GGATAATGGTCCATTGATAAC	0.343													9	11					0	0	0.069234	0	0
KLF5	688	broad.mit.edu	37	13	73636330	73636330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr13:73636330C>T	uc001vje.2	+	2	917	c.593C>T	c.(592-594)ACC>ATC	p.T198I	KLF5_uc001vjd.2_Missense_Mutation_p.T107I	NM_001730	NP_001721	Q13887	KLF5_HUMAN	Kruppel-like factor 5	198					transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)|pancreas(1)	3		Prostate(6;0.00187)|Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.0011)		TCACACCAGACCGCAGCTCCA	0.537													50	41					0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	13	97600276	97600276	+	RNA	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr13:97600276G>A	uc010afq.1	+	1		c.5G>A								Homo sapiens cDNA clone IMAGE:5295705.																		AAATCAGTTGGATCAGTGGAG	0.418													3	12					0	0	0.004672	0	0
OR4N5	390437	broad.mit.edu	37	14	20612737	20612737	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:20612737G>A	uc010tla.1	+	1	843	c.843G>A	c.(841-843)TTG>TTA	p.L281L		NM_001004724	NP_001004724	Q8IXE1	OR4N5_HUMAN	olfactory receptor, family 4, subfamily N,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.84e-06)	GBM - Glioblastoma multiforme(265;0.0143)		TCTTTCCTTTGATGAACCCTG	0.408													52	50					0	0	0.048971	0	0
OSGEP	55644	broad.mit.edu	37	14	20915794	20915794	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:20915794C>T	uc001vxf.2	-	9	1205	c.849G>A	c.(847-849)CGG>CGA	p.R283R		NM_017807	NP_060277	Q9NPF4	OSGEP_HUMAN	O-sialoglycoprotein endopeptidase	283					proteolysis|tRNA processing		metal ion binding|metalloendopeptidase activity|protein binding				0	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;1.09e-07)|all cancers(55;1.19e-06)	GBM - Glioblastoma multiforme(265;0.0231)|READ - Rectum adenocarcinoma(17;0.196)		TAGCAAAAAGCCGGGCTCCAC	0.433													27	17					0	0	0.069456	0	0
LRFN5	145581	broad.mit.edu	37	14	42368155	42368155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:42368155G>A	uc001wvm.2	+	5	3332	c.2134G>A	c.(2134-2136)GAA>AAA	p.E712K	LRFN5_uc010ana.2_3'UTR	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	712	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GATTGTCCAGGAAACACAGGT	0.279										HNSCC(30;0.082)			38	53					0	0	0.048971	0	0
C14orf37	145407	broad.mit.edu	37	14	58605023	58605024	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:58605023_58605024CC>TT	uc001xdc.2	-	2	1164_1165	c.1053_1054GG>AA	c.(1051-1056)GAGGGT>GAAAGT	p.G352S	C14orf37_uc010tro.1_Missense_Mutation_p.G390S|C14orf37_uc001xdd.2_Missense_Mutation_p.G352S|C14orf37_uc001xde.2_Missense_Mutation_p.G352S	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	352	Extracellular (Potential).					integral to membrane	binding				0						CCTTCCATACCCTCATGGCTTA	0.554													65	107					0	0	0.004672	0	0
ARID4A	5926	broad.mit.edu	37	14	58831412	58831412	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:58831412A>T	uc001xdp.2	+	20	2859	c.2605A>T	c.(2605-2607)ATA>TTA	p.I869L	ARID4A_uc001xdo.2_Missense_Mutation_p.I869L|ARID4A_uc001xdq.2_Missense_Mutation_p.I869L|ARID4A_uc010apg.1_Missense_Mutation_p.I547L	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	869					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity	p.I869V(1)		ovary(3)|skin(2)|lung(1)	6						AGAGAAAAAAATAAGAATTGA	0.323													20	19					0	0	0.076483	0	0
KCNK10	54207	broad.mit.edu	37	14	88652175	88652175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:88652175C>T	uc001xwo.2	-	7	1778	c.1321G>A	c.(1321-1323)GAC>AAC	p.D441N	KCNK10_uc001xwm.2_Missense_Mutation_p.D446N|KCNK10_uc001xwn.2_Missense_Mutation_p.D446N	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	441	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						ATGATGTTGTCCTCGGACGCA	0.547													58	65					0	0	0.048971	0	0
ADAM6	8755	broad.mit.edu	37	14	106518643	106518644	+	RNA	DNP	GG	AA	AA	rs113025074		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:106518643_106518644GG>AA	uc010tyt.1	-	1630		c.32793_32794CC>TT								Parts of antibodies, mostly variable regions.												0						AGAGTCTCAGGGACCCCCCAGG	0.594													96	116					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106631451	106631451	+	RNA	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr14:106631451C>T	uc010tyt.1	-	1074		c.25053G>A								Parts of antibodies, mostly variable regions.												0						GAAGAGGATCCCCCAGGTACA	0.547													20	36					0	0	0.062417	0	0
GATM	2628	broad.mit.edu	37	15	45661694	45661694	+	Missense_Mutation	SNP	G	A	A	rs147804855		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr15:45661694G>A	uc001zvc.2	-	3	643	c.314C>T	c.(313-315)CCA>CTA	p.P105L	GATM_uc001zvb.2_5'UTR|GATM_uc010uev.1_Missense_Mutation_p.P158L	NM_001482	NP_001473	P50440	GATM_HUMAN	L-arginine:glycine amidinotransferase precursor	105					creatine biosynthetic process	mitochondrial inner membrane|mitochondrial intermembrane space	glycine amidinotransferase activity|protein binding				0		all_cancers(109;1.25e-09)|all_epithelial(112;5.56e-08)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;4.87e-16)|GBM - Glioblastoma multiforme(94;1.97e-06)	Creatine(DB00148)|Glycine(DB00145)|L-Ornithine(DB00129)	CTGGTAAAATGGCCAGTACTT	0.363													12	19					0	0	0.093190	0	0
CEP152	22995	broad.mit.edu	37	15	49031358	49031358	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr15:49031358G>T	uc001zwy.2	-	26	4087	c.4053C>A	c.(4051-4053)TGC>TGA	p.C1351*	CEP152_uc001zwz.2_Nonsense_Mutation_p.C1407*	NM_014985	NP_055800	O94986	CE152_HUMAN	centrosomal protein 152kDa	1351					centrosome duplication|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein kinase binding			lung(2)	2		all_lung(180;0.0428)		all cancers(107;1.08e-07)|GBM - Glioblastoma multiforme(94;2.32e-06)		GAGCTTGTTCGCACAGAGTTC	0.388													39	51					1.30475e-32	1.32169e-32	0.111260	1	0
ALDH1A2	8854	broad.mit.edu	37	15	58302906	58302906	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr15:58302906T>A	uc002aex.2	-	4	492	c.434A>T	c.(433-435)AAA>ATA	p.K145I	ALDH1A2_uc002aey.2_Missense_Mutation_p.K145I|ALDH1A2_uc010ugv.1_Missense_Mutation_p.K124I|ALDH1A2_uc010ugw.1_Missense_Mutation_p.K116I|ALDH1A2_uc002aew.2_Missense_Mutation_p.K49I	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	145					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	TCGAAAGGTTTTGATGACGCC	0.423													13	15					0	0	0.024245	0	0
TIPIN	54962	broad.mit.edu	37	15	66641432	66641432	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr15:66641432G>A	uc002apr.2	-	6	527	c.441C>T	c.(439-441)CTC>CTT	p.L147L	TIPIN_uc010ujn.1_Silent_p.L46L|TIPIN_uc010ujo.1_Silent_p.L46L|SCARNA14_uc010bhp.1_5'Flank	NM_017858	NP_060328	Q9BVW5	TIPIN_HUMAN	TIMELESS interacting protein	147					cell division|DNA replication checkpoint|intra-S DNA damage checkpoint|mitosis|positive regulation of cell proliferation|regulation of DNA replication involved in S phase|replication fork protection	cytoplasm|nuclear chromatin	protein binding			ovary(1)	1						GTAAAATAGGGAGATCAAGTC	0.264													5	16					0	0	0.014758	0	0
PARP6	56965	broad.mit.edu	37	15	72549780	72549781	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr15:72549780_72549781GG>AA	uc002auc.2	-	12	1366_1367	c.907_908CC>TT	c.(907-909)CCA>TTA	p.P303L	PARP6_uc002aua.2_Missense_Mutation_p.P148L|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA|PARP6_uc002auf.1_Missense_Mutation_p.P303L	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	303							NAD+ ADP-ribosyltransferase activity				0						ACAGACAGCTGGCTGAAAGGAT	0.515													31	67					0	0	0.004672	0	0
CSPG4	1464	broad.mit.edu	37	15	75974676	75974676	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr15:75974676C>T	uc002baw.2	-	8	5001	c.4908G>A	c.(4906-4908)CAG>CAA	p.Q1636Q		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	1636	Extracellular (Potential).|Cysteine-containing.|Neurite growth inhibition (By similarity).|CSPG 11.				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						CTGTGCTGTCCTGCTGGGCGT	0.672													61	46					0	0	0.048971	0	0
ZNF710	374655	broad.mit.edu	37	15	90611620	90611620	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr15:90611620C>T	uc002bov.1	+	2	1374	c.1251C>T	c.(1249-1251)TCC>TCT	p.S417S		NM_198526	NP_940928	Q8N1W2	ZN710_HUMAN	zinc finger protein 710	417	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	Melanoma(11;0.00551)|Lung NSC(78;0.0196)|all_lung(78;0.04)		BRCA - Breast invasive adenocarcinoma(143;0.00769)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.129)			TGGACTTCTCCACCCTGACCC	0.662													35	33					0	0	0.069456	0	0
MSLNL	401827	broad.mit.edu	37	16	823261	823261	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:823261G>A	uc002cjz.1	-	10	2007	c.2007C>T	c.(2005-2007)TTC>TTT	p.F669F		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	318	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						AGTGCACCAGGAAGAGGTCGT	0.647													44	57					0	0	0.048971	0	0
TBL3	10607	broad.mit.edu	37	16	2028377	2028377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:2028377C>T	uc002cnu.1	+	21	2300	c.2198C>T	c.(2197-2199)GCC>GTC	p.A733V	TBL3_uc002cnv.1_Missense_Mutation_p.A619V|TBL3_uc010bsb.1_3'UTR|TBL3_uc010bsc.1_Missense_Mutation_p.A600V|TBL3_uc010uvt.1_Missense_Mutation_p.A202V|TBL3_uc002cnw.1_RNA	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	733					G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						GAGGCCCAGGCCGTGCTGGGT	0.672													56	59					0	0	0.048971	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857387	9857387	+	Silent	SNP	C	T	T	rs61758997		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:9857387C>T	uc002czo.3	-	13	4562	c.4014G>A	c.(4012-4014)GGG>GGA	p.G1338G	GRIN2A_uc010uym.1_Silent_p.G1338G|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1338	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGCTTTTTTTCCCCGAGAGTT	0.552													30	42					0	0	0.034045	0	0
C16orf62	57020	broad.mit.edu	37	16	19580814	19580814	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:19580814C>T	uc002dgn.1	+	3	198	c.186C>T	c.(184-186)TCC>TCT	p.S62S	C16orf62_uc002dgo.1_Silent_p.S62S|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_Silent_p.S62S	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	62	Ser-rich.					integral to membrane				ovary(1)	1						CCTCCTCCTCCAGCTCCGTGG	0.567													39	53					0	0	0.111260	0	0
ERN2	10595	broad.mit.edu	37	16	23713998	23713998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:23713998C>T	uc002dma.3	-	9	1193	c.1024G>A	c.(1024-1026)GAA>AAA	p.E342K	ERN2_uc010bxp.2_Missense_Mutation_p.E342K|ERN2_uc010bxq.1_Missense_Mutation_p.E150K	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	294	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		AAGCCAGTTTCATCCTTCCCC	0.448													39	42					0	0	0.048971	0	0
APOB48R	55911	broad.mit.edu	37	16	28509498	28509498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:28509498C>T	uc002dqb.1	+	4	3035	c.3025C>T	c.(3025-3027)CGT>TGT	p.R1009C	uc010vct.1_Intron|APOB48R_uc010byg.1_Missense_Mutation_p.R547C	NM_018690	NP_061160	Q0VD83	APOBR_HUMAN	apolipoprotein B48 receptor	1009					cholesterol metabolic process|lipid transport	chylomicron|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle					0						GCCCTCTTTTCGTCGGACTCC	0.682													4	9					0	0	0.009096	0	0
TAOK2	9344	broad.mit.edu	37	16	29999120	29999120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:29999120C>T	uc002dva.1	+	16	4310	c.3527C>T	c.(3526-3528)GCC>GTC	p.A1176V	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.A1183V|TAOK2_uc002dvd.1_Missense_Mutation_p.A1003V	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	1176	Helical; (Potential).				actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CCCCCGTGGGCCATCCACACA	0.677													28	27					0	0	0.037714	0	0
NFAT5	10725	broad.mit.edu	37	16	69727950	69727950	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:69727950C>T	uc002exm.1	+	12	5376	c.4168C>T	c.(4168-4170)CAA>TAA	p.Q1390*	NFAT5_uc002exi.2_Nonsense_Mutation_p.Q1314*|NFAT5_uc002exj.1_Nonsense_Mutation_p.Q1314*|NFAT5_uc002exk.1_Nonsense_Mutation_p.Q1314*|NFAT5_uc002exl.1_Nonsense_Mutation_p.Q1408*|NFAT5_uc002exn.1_Nonsense_Mutation_p.Q1407*|NFAT5_uc002exo.1_Intron	NM_006599	NP_006590	O94916	NFAT5_HUMAN	nuclear factor of activated T-cells 5 isoform c	1390					excretion|signal transduction|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0						CAGTATAAATCAACAAGATAT	0.443													34	47					0	0	0.064281	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76461443	76461443	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:76461443G>A	uc002feu.1	+	6	870	c.485G>A	c.(484-486)TGG>TAG	p.W162*	CNTNAP4_uc002fev.1_Nonsense_Mutation_p.W74*|CNTNAP4_uc010chb.1_Nonsense_Mutation_p.W137*|CNTNAP4_uc002fex.1_Nonsense_Mutation_p.W165*|CNTNAP4_uc002few.2_Nonsense_Mutation_p.W137*	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	162	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CCTTTGGAATGGAACCCCAAG	0.408													27	30					0	0	0.099896	0	0
MON1B	22879	broad.mit.edu	37	16	77225523	77225524	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:77225523_77225524GG>AA	uc002fez.2	+	2	471_472	c.141_142GG>AA	c.(139-144)GAGGAA>GAAAAA	p.E48K	MON1B_uc010vnf.1_Missense_Mutation_p.E48K|MON1B_uc010vng.1_Intron|MON1B_uc002ffa.2_5'Flank	NM_014940	NP_055755	Q7L1V2	MON1B_HUMAN	MON1 homolog B	48							protein binding				0						AGGGCCTGGAGGAAACAGGTAT	0.554													8	9					0	0	0.004672	0	0
FANCA	2175	broad.mit.edu	37	16	89809283	89809283	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:89809283C>T	uc002fou.1	-	37	3732	c.3690G>A	c.(3688-3690)CTG>CTA	p.L1230L	FANCA_uc010vpn.1_Silent_p.L1230L|FANCA_uc010vpo.1_Silent_p.L316L	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	1230					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		TCGCAAAGTGCAGTGCAGCAG	0.537			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				57	63					0	0	0.048971	0	0
DEF8	54849	broad.mit.edu	37	16	90032355	90032355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr16:90032355C>T	uc002fpn.1	+	13	1612	c.1523C>T	c.(1522-1524)CCC>CTC	p.P508L	DEF8_uc002fpo.1_Missense_Mutation_p.P447L|DEF8_uc002fpp.1_Missense_Mutation_p.P437L|DEF8_uc010vpq.1_Missense_Mutation_p.P387L|DEF8_uc010vpr.1_Missense_Mutation_p.P430L|DEF8_uc002fpq.1_Missense_Mutation_p.P205L	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	508					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		GAGCCAGGTCCCGATGTGGAG	0.637													14	16					0	0	0.043863	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2894600	2894600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:2894600G>A	uc010ckd.2	+	12	913	c.823G>A	c.(823-825)GAG>AAG	p.E275K	RAP1GAP2_uc010cke.2_Missense_Mutation_p.E260K	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	275	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						GACCCTGGAGGAGGAGCTATT	0.473													4	0					0	0	0.009096	0	0
ITGAE	3682	broad.mit.edu	37	17	3653743	3653743	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:3653743G>A	uc002fwo.3	-	16	2026	c.1927C>T	c.(1927-1929)CAG>TAG	p.Q643*		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	643	FG-GAP 7.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		CCGAAGTACTGGAGTCCTGGG	0.627													29	2					0	0	0.045705	0	0
SLC16A11	162515	broad.mit.edu	37	17	6945575	6945575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:6945575G>A	uc002gei.1	-	3	1264	c.926C>T	c.(925-927)CCG>CTG	p.P309L		NM_153357	NP_699188	Q8NCK7	MOT11_HUMAN	solute carrier family 16, member 11	309	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(1)	1						CAGCAGCCGCGGGAGGGGCAC	0.741													5	0					0	0	0.029380	0	0
TP53	7157	broad.mit.edu	37	17	7578530	7578530	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:7578530A>G	uc002gim.2	-	5	594	c.400T>C	c.(400-402)TTT>CTT	p.F134L	TP53_uc002gig.1_Missense_Mutation_p.F134L|TP53_uc002gih.2_Missense_Mutation_p.F134L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.F2L|TP53_uc010cng.1_Missense_Mutation_p.F2L|TP53_uc002gii.1_Missense_Mutation_p.F2L|TP53_uc010cnh.1_Missense_Mutation_p.F134L|TP53_uc010cni.1_Missense_Mutation_p.F134L|TP53_uc002gij.2_Missense_Mutation_p.F134L|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.F41L|TP53_uc002gio.2_Missense_Mutation_p.F2L|TP53_uc010vug.1_Missense_Mutation_p.F95L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	134	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		F -> V (in sporadic cancers; somatic mutation).|F -> C (in sporadic cancers; somatic mutation).|F -> L (in sporadic cancers; somatic mutation).|F -> I (in sporadic cancers; somatic mutation).|F -> S (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.F134L(16)|p.F134V(9)|p.0?(7)|p.F134C(6)|p.C135fs*35(5)|p.F134S(3)|p.N131fs*27(2)|p.V73fs*9(1)|p.F134_T140>S(1)|p.S127fs*36(1)|p.F134fs*14(1)|p.Y126fs*11(1)|p.F134fs*39(1)|p.K132_A138delKMFCQLA(1)|p.S127_Q136del10(1)|p.C135T(1)|p.M133fs*13(1)|p.F134F(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AGTTGGCAAAACATCTTGTTG	0.567		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			17	1					0	0	0.038395	0	0
MYH4	4622	broad.mit.edu	37	17	10351974	10351974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:10351974G>A	uc002gmn.2	-	32	4603	c.4492C>T	c.(4492-4494)CAT>TAT	p.H1498Y	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1498	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTTTCAAGATGATCCAGGGAT	0.428													56	4					0	0	0.048971	0	0
RICH2	9912	broad.mit.edu	37	17	12832255	12832255	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:12832255G>A	uc002gnr.3	+	7	801	c.474G>A	c.(472-474)CAG>CAA	p.Q158Q	RICH2_uc010vvk.1_Silent_p.Q158Q|RICH2_uc010vvl.1_Silent_p.Q158Q|RICH2_uc002gns.3_Intron|RICH2_uc010vvm.1_Silent_p.Q158Q|RICH2_uc010vvn.1_RNA	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	158	BAR.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GGTGGCAGCAGACTTCCAAGT	0.512													9	0					0	0	0.069234	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904093	21904093	+	RNA	SNP	A	G	G	rs76302591		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:21904093A>G	uc002gza.2	+	1		c.32A>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						cacggggtccacaggaacgtc	0													3	38					0	0	0.058154	0	0
TP53I13	90313	broad.mit.edu	37	17	27896362	27896362	+	Silent	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:27896362A>G	uc002hee.2	+	3	206	c.168A>G	c.(166-168)CGA>CGG	p.R56R	ABHD15_uc002hed.1_5'Flank	NM_138349	NP_612358	Q8NBR0	P5I13_HUMAN	tumor protein p53 inducible protein 13	56	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane					0				READ - Rectum adenocarcinoma(3;0.236)		CCTACACACGAGTGAGCCCAG	0.612													2	12					0	0	0.004672	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	C	C	rs141357429	by1000genomes	TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:39274087G>C	uc002hvz.2	-	1	520	c.481C>G	c.(481-483)CTG>GTG	p.L161V		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	161	27.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ACTGGACGCAGGcagcagcag	0.323													4	12					0	0	0.014758	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305839	39305839	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:39305839A>T	uc002hwb.2	-	1	216	c.181T>A	c.(181-183)TGC>AGC	p.C61S		NM_033188	NP_149445	Q9BYR2	KRA45_HUMAN	keratin associated protein 4-5	61	27 X 5 AA repeats of C-C-[GRQVCHIEK]- [SPTR]-[VSTQYC].|9.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ctggagatgcagcagctaggg	0.274													3	52					0	0	0.009096	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47119686	47119686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:47119686G>A	uc002iom.2	+	9	1358	c.1024G>A	c.(1024-1026)GAA>AAA	p.E342K	IGF2BP1_uc010dbj.2_Missense_Mutation_p.E203K	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	342	Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).|KH 2.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						GGCCGAGCAGGAAATAATGAA	0.517													58	1					0	0	0.048971	0	0
FASN	2194	broad.mit.edu	37	17	80042406	80042406	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr17:80042406G>A	uc002kdu.2	-	27	4868	c.4751C>T	c.(4750-4752)TCC>TTC	p.S1584F	FASN_uc002kdv.1_5'Flank	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	1584					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GGCATCAGGGGACAGCTTGCC	0.682													10	1					0	0	0.069234	0	0
DSG1	1828	broad.mit.edu	37	18	28914025	28914025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr18:28914025G>A	uc002kwp.2	+	8	1077	c.865G>A	c.(865-867)GAG>AAG	p.E289K		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	289	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AAATTTGCTCGAGATTAGAGT	0.328													24	52					0	0	0.030593	0	0
TCEB3B	51224	broad.mit.edu	37	18	44561085	44561085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr18:44561085G>A	uc002lcr.1	-	1	904	c.551C>T	c.(550-552)CCT>CTT	p.P184L	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	184					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGCGGGCTCAGGGCCCTCGGG	0.701													17	34					0	0	0.049695	0	0
ZNF516	9658	broad.mit.edu	37	18	74091511	74091511	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr18:74091511G>A	uc010dqx.1	-	3	2794	c.2559C>T	c.(2557-2559)CCC>CCT	p.P853P	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	853					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		CCACTCCCAGGGGAGAAGAGC	0.627													47	81					0	0	0.048971	0	0
ELANE	1991	broad.mit.edu	37	19	856086	856086	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:856086C>T	uc002lqb.2	+	5	764	c.726C>T	c.(724-726)ATC>ATT	p.I242I		NM_001972	NP_001963	P08246	ELNE_HUMAN	neutrophil elastase preproprotein	242	Peptidase S1.				cellular calcium ion homeostasis|negative regulation of chemokine biosynthetic process|negative regulation of chemotaxis|negative regulation of inflammatory response|negative regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of MAP kinase activity|positive regulation of smooth muscle cell proliferation|protein catabolic process|proteolysis|response to UV	cell surface|extracellular region|stored secretory granule	bacterial cell surface binding|cytokine binding|heparin binding			pancreas(1)	1					Alpha-1-proteinase inhibitor(DB00058)|Filgrastim(DB00099)|Pegfilgrastim(DB00019)	TAAACTGGATCGACTCTATCA	0.652									Kostmann_syndrome				138	175					0	0	0.048971	0	0
GADD45B	4616	broad.mit.edu	37	19	2477146	2477146	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:2477146T>A	uc002lwb.1	+	3	488	c.266T>A	c.(265-267)ATC>AAC	p.I89N	GADD45B_uc010dtd.1_Missense_Mutation_p.I74N|GADD45B_uc002lwc.1_Missense_Mutation_p.I74N	NM_015675	NP_056490	O75293	GA45B_HUMAN	growth arrest and DNA-damage-inducible, beta	89					activation of MAPKKK activity|apoptosis|cell differentiation|multicellular organismal development|response to stress						0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GACATCAACATCGTGCGGGTG	0.627											OREG0025141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	44	57					0	0	0.048971	0	0
GADD45B	4616	broad.mit.edu	37	19	2477183	2477183	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:2477183C>T	uc002lwb.1	+	3	525	c.303C>T	c.(301-303)CTC>CTT	p.L101L	GADD45B_uc010dtd.1_Silent_p.L86L|GADD45B_uc002lwc.1_Silent_p.L86L	NM_015675	NP_056490	O75293	GA45B_HUMAN	growth arrest and DNA-damage-inducible, beta	101					activation of MAPKKK activity|apoptosis|cell differentiation|multicellular organismal development|response to stress						0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGGCGCAGCTCCTGGGAGAGC	0.662											OREG0025141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	46					0	0	0.080422	0	0
ANKRD24	170961	broad.mit.edu	37	19	4219633	4219633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:4219633G>A	uc010dtt.1	+	19	3325	c.3049G>A	c.(3049-3051)GAG>AAG	p.E1017K		NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	1017	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		ACACGCAGCCGAGGCACAGCT	0.642													59	82					0	0	0.048971	0	0
SLC25A23	79085	broad.mit.edu	37	19	6459558	6459558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:6459558G>A	uc002mex.1	-	1	224	c.82C>T	c.(82-84)CGC>TGC	p.R28C	SLC25A23_uc002mev.2_RNA	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	28	Mitochondrial intermembrane (Potential).|1 (Potential).|EF-hand 1.				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)|pancreas(1)	2						ACGTCCACGCGGCCATCCTTG	0.667													37	39					0	0	0.039052	0	0
MUC16	94025	broad.mit.edu	37	19	9070067	9070067	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:9070067G>A	uc002mkp.2	-	3	17583	c.17379C>T	c.(17377-17379)ATC>ATT	p.I5793I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5795	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCACAGTGTTGATCTCCTCAG	0.458													37	30					0	0	0.074837	0	0
MUC16	94025	broad.mit.edu	37	19	9085504	9085504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:9085504C>T	uc002mkp.2	-	1	6515	c.6311G>A	c.(6310-6312)AGA>AAA	p.R2104K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2104	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTGGATTTCTTTGCTTAGC	0.502													85	94					0	0	0.048971	0	0
MUC16	94025	broad.mit.edu	37	19	9085830	9085830	+	Silent	SNP	A	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:9085830A>T	uc002mkp.2	-	1	6189	c.5985T>A	c.(5983-5985)GTT>GTA	p.V1995V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1995	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCTGCACAGAAACTTTTTCTG	0.468													30	37					0	0	0.041601	0	0
C3P1	388503	broad.mit.edu	37	19	10165989	10165989	+	RNA	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:10165989G>A	uc010dwx.1	+	15		c.1852G>A				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						GGGAACCCAGGAAGCACTTGG	0.607													31	58					0	0	0.054565	0	0
CARM1	10498	broad.mit.edu	37	19	11031727	11031728	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:11031727_11031728GA>AC	uc002mpz.2	+	14	1665_1666	c.1539_1540GA>AC	c.(1537-1542)GGGATG>GGACTG	p.M514L	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_Missense_Mutation_p.M297L	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	514	Transactivation domain (By similarity).				cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						TGGACACAGGGATGCCGACCGC	0.668													20	34					0	0	0.004672	0	0
CYP4F12	66002	broad.mit.edu	37	19	15794549	15794549	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:15794549C>T	uc002nbl.2	+	7	955	c.894C>T	c.(892-894)TTC>TTT	p.F298F		NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					CTTTGGATTTCATTGATGTGC	0.438													71	82					0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	19	15890693	15890693	+	RNA	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:15890693C>T	uc002nbo.2	-	1		c.105G>A								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		CTGCCCGAGGCCCAGCCAGGA	0.667													16	17					0	0	0.049695	0	0
KCNN1	3780	broad.mit.edu	37	19	18092614	18092614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:18092614C>T	uc002nht.2	+	5	905	c.595C>T	c.(595-597)CAC>TAC	p.H199Y	KCNN1_uc010xqa.1_Missense_Mutation_p.H199Y	NM_002248	NP_002239	Q92952	KCNN1_HUMAN	potassium intermediate/small conductance	199	Helical; Name=Segment S3; (Potential).				synaptic transmission	voltage-gated potassium channel complex	calmodulin binding|small conductance calcium-activated potassium channel activity				0						GTGCGCCATTCACCCGGTGCC	0.662													19	19					0	0	0.076483	0	0
LSR	51599	broad.mit.edu	37	19	35749931	35749931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:35749931G>A	uc002nyl.2	+	3	905	c.682G>A	c.(682-684)GGG>AGG	p.G228R	LSR_uc002nym.2_Missense_Mutation_p.G228R|LSR_uc002nyn.2_Missense_Mutation_p.G228R|LSR_uc002nyo.2_Missense_Mutation_p.G228R|LSR_uc010xsr.1_Intron|LSR_uc002nyp.2_Missense_Mutation_p.G191R	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	228	Extracellular (Potential).|Ig-like V-type.				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			GGACCTCCAGGGGAACAATGA	0.592													30	56					0	0	0.037714	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36269237	36269237	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:36269237T>G	uc002obr.1	+	4	330	c.245T>G	c.(244-246)GTG>GGG	p.V82G	ARHGAP33_uc002obs.1_Missense_Mutation_p.V82G|ARHGAP33_uc002obt.1_5'UTR|ARHGAP33_uc010eek.1_Missense_Mutation_p.V100G	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	82	PX; atypical.				cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						AATGAGCTGGTGTTCGGGGTG	0.577													51	56					0	0	0.048971	0	0
ZNF566	84924	broad.mit.edu	37	19	36940223	36940223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:36940223G>A	uc002oea.3	-	5	995	c.913C>T	c.(913-915)CAT>TAT	p.H305Y	ZNF566_uc010xte.1_Missense_Mutation_p.H305Y|ZNF566_uc010xtf.1_Missense_Mutation_p.H306Y|ZNF566_uc002oeb.3_Missense_Mutation_p.H305Y|ZNF566_uc002oec.3_Missense_Mutation_p.H201Y|ZNF566_uc010xtg.1_Missense_Mutation_p.H201Y	NM_032838	NP_116227	Q969W8	ZN566_HUMAN	zinc finger protein 566 isoform 1	305	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TCCCCAGTATGAATTCTCTGA	0.408													49	55					0	0	0.048971	0	0
CYP2B7P1	1556	broad.mit.edu	37	19	41442375	41442375	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:41442375G>A	uc010ehg.1	+	3	421	c.413G>A	c.(412-414)GGA>GAA	p.G138E	CYP2A7_uc002opo.2_Intron|CYP2B7P1_uc010ehh.1_Missense_Mutation_p.G138E|CYP2B7P1_uc002opq.2_RNA					SubName: Full=Cytochrome P450 2B7 short isoform; SubName: Full=CYP2B protein;											ovary(1)|skin(1)	2						TTCGGGATGGGAAAGCGGAGT	0.552													16	18					0	0	0.028581	0	0
AXL	558	broad.mit.edu	37	19	41743950	41743950	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:41743950G>A	uc010ehj.2	+	7	1075	c.885G>A	c.(883-885)CGG>CGA	p.R295R	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.R295R|AXL_uc010ehk.2_Silent_p.R295R	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	295	Extracellular (Potential).|Fibronectin type-III 1.		R -> W (in a lung neuroendocrine carcinoma sample; somatic mutation).			integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.R295W(1)		lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						ATCAGCTTCGGCTAGGCAGCC	0.647													136	111					0	0	0.048971	0	0
CEACAM6	4680	broad.mit.edu	37	19	42265197	42265197	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:42265197C>A	uc002orm.2	+	3	614	c.465C>A	c.(463-465)AAC>AAA	p.N155K		NM_002483	NP_002474	P40199	CEAM6_HUMAN	carcinoembryonic antigen-related cell adhesion	155	Ig-like C2-type 1.				cell-cell signaling|signal transduction	anchored to membrane|integral to plasma membrane				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(3;0.00575)|all cancers(3;0.0352)|Epithelial(262;0.0797)		ACAACTCCAACCCCGTGGAGG	0.557													101	165					6.13486e-44	6.24699e-44	0.048971	1	0
CEACAM3	1084	broad.mit.edu	37	19	42301621	42301621	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:42301621C>T	uc002orn.1	+	2	241	c.165C>T	c.(163-165)GTC>GTT	p.V55V	CEACAM3_uc010eia.1_Silent_p.V55V|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	55	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						TTCTACTTGTCCACAATCTGC	0.493													89	96					0	0	0.048971	0	0
PSG6	5675	broad.mit.edu	37	19	43411173	43411173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:43411173G>A	uc002ovj.1	-	5	1193	c.1141C>T	c.(1141-1143)CCC>TCC	p.P381S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.P388S|PSG6_uc002ovi.2_Missense_Mutation_p.P382S|PSG6_uc010xwk.1_Missense_Mutation_p.P221S|PSG11_uc002ovk.1_Missense_Mutation_p.P380S|PSG6_uc002ove.1_Missense_Mutation_p.P171S|PSG6_uc002ovf.1_Missense_Mutation_p.P288S|PSG6_uc002ovg.1_Missense_Mutation_p.P381S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	381	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				GTAATTTGGGGGATAAAGAGC	0.453													143	369					0	0	0.048971	0	0
IRGQ	126298	broad.mit.edu	37	19	44097263	44097263	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:44097263G>A	uc002oww.2	-	2	905	c.787C>T	c.(787-789)CCC>TCC	p.P263S	IRGQ_uc010eiv.2_Missense_Mutation_p.P263S	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	263							protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				GCTGGGAAGGGAGTGGGTGCT	0.692													13	13					0	0	0.024245	0	0
ZNF233	353355	broad.mit.edu	37	19	44770458	44770458	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:44770458C>T	uc002oyz.1	+	3	250	c.123C>T	c.(121-123)TTC>TTT	p.F41F	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_5'UTR	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	41	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				TGGAGAACTTCAGGAACCTGC	0.507													72	97					0	0	0.048971	0	0
SLC1A5	6510	broad.mit.edu	37	19	47278789	47278789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:47278789G>A	uc002pfs.2	-	8	2224	c.1604C>T	c.(1603-1605)TCT>TTT	p.S535F	SLC1A5_uc010xyh.1_Missense_Mutation_p.S333F|SLC1A5_uc002pfq.2_Missense_Mutation_p.S359F|SLC1A5_uc002pfr.2_Missense_Mutation_p.S307F	NM_005628	NP_005619	Q15758	AAAT_HUMAN	solute carrier family 1 member 5 isoform 1	535					cellular nitrogen compound metabolic process	integral to plasma membrane|melanosome|membrane fraction	neutral amino acid transmembrane transporter activity|protein binding|receptor activity|sodium:dicarboxylate symporter activity				0		all_epithelial(76;0.00314)|Ovarian(192;0.0798)|all_neural(266;0.107)		OV - Ovarian serous cystadenocarcinoma(262;0.000338)|all cancers(93;0.000882)|Epithelial(262;0.0211)|GBM - Glioblastoma multiforme(486;0.0341)	L-Asparagine(DB00174)|L-Glutamine(DB00130)	TTCCTTCTCAGAGGCGACCGT	0.587													91	87					0	0	0.048971	0	0
HRC	3270	broad.mit.edu	37	19	49656898	49656898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:49656898C>T	uc002pmv.2	-	1	1784	c.1597G>A	c.(1597-1599)GAG>AAG	p.E533K		NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	533					muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		tcttcctcctcctGGTTCAGG	0.413													12	14					0	0	0.093190	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51961464	51961464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:51961464C>T	uc002pwt.2	-	1	245	c.178G>A	c.(178-180)GAC>AAC	p.D60N	SIGLEC8_uc010yda.1_Missense_Mutation_p.D60N|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.D60N	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	60	Ig-like V-type.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGAACTGGGTCAGAGTCAGTC	0.587													54	68					0	0	0.048971	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52146868	52146868	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:52146868A>C	uc002pxf.3	-	6	1190	c.1070T>G	c.(1069-1071)GTC>GGC	p.V357G		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	357	Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		CAGGGTGAGGACGAGGGGCCA	0.582													25	40					0	0	0.037714	0	0
LILRB5	10990	broad.mit.edu	37	19	54760057	54760057	+	Silent	SNP	T	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:54760057T>G	uc002qex.2	-	4	615	c.504A>C	c.(502-504)TCA>TCC	p.S168S	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Silent_p.S159S|LILRB5_uc002qey.2_Silent_p.S168S|LILRB5_uc002qez.2_Intron|LILRB5_uc002qfa.1_Intron|LILRB5_uc010yes.1_Intron	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	168	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GGAGCTTCTGTGAGTACAGGG	0.542													22	26					0	0	0.076483	0	0
LAIR2	3904	broad.mit.edu	37	19	55019312	55019312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:55019312G>A	uc002qgc.2	+	3	399	c.277G>A	c.(277-279)GAA>AAA	p.E93K	LAIR2_uc002qga.1_RNA|LAIR2_uc002qgb.1_RNA|LAIR2_uc002qgd.2_Missense_Mutation_p.E93K|LAIR2_uc010erl.2_Intron	NM_002288	NP_002279	Q6ISS4	LAIR2_HUMAN	leukocyte-associated immunoglobulin-like	93	Ig-like C2-type.					extracellular region	receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0967)		CTCAGTAAGTGAAGGAAATGC	0.493													57	64					0	0	0.048971	0	0
NLRP7	199713	broad.mit.edu	37	19	55451437	55451437	+	Silent	SNP	G	A	A	rs140816006		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:55451437G>A	uc002qih.3	-	4	826	c.750C>T	c.(748-750)TTC>TTT	p.F250F	NLRP7_uc002qig.3_Silent_p.F250F|NLRP7_uc002qii.3_Silent_p.F250F|NLRP7_uc010esk.2_Silent_p.F250F|NLRP7_uc010esl.2_Silent_p.F278F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	250	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CATCGACCACGAACAGGATTC	0.577													65	99					0	0	0.048971	0	0
NLRP5	126206	broad.mit.edu	37	19	56539219	56539219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr19:56539219G>A	uc002qmj.2	+	7	1620	c.1620G>A	c.(1618-1620)TGG>TGA	p.W540*	NLRP5_uc002qmi.2_Nonsense_Mutation_p.W521*	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	540	NACHT.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		AGGGAGTGTGGAATAGGAAGT	0.552													16	16					0	0	0.043863	0	0
PXDN	7837	broad.mit.edu	37	2	1652489	1652489	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:1652489G>A	uc002qxa.2	-	17	3127	c.3063C>T	c.(3061-3063)ATC>ATT	p.I1021I		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	1021					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		CCGCACCCACGATCTTCCTGG	0.617													15	8					0	0	0.049695	0	0
C2orf28	51374	broad.mit.edu	37	2	27438360	27438360	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:27438360C>T	uc002rjf.2	+	4	650	c.477C>T	c.(475-477)CCC>CCT	p.P159P	C2orf28_uc002rjg.2_Silent_p.P46P|C2orf28_uc002rjh.2_5'Flank|CAD_uc002rji.2_5'Flank|CAD_uc010eyw.2_5'Flank	NM_080592	NP_542159	Q6UW56	APR3_HUMAN	apoptosis related protein 3 isoform b	104	Extracellular (Potential).					integral to membrane|plasma membrane				skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGCAAACCCCCTCAAAGGTG	0.468													65	59					0	0	0.048971	0	0
XDH	7498	broad.mit.edu	37	2	31609293	31609293	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:31609293C>T	uc002rnv.1	-	9	859	c.780G>A	c.(778-780)GGG>GGA	p.G260G		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	260	FAD-binding PCMH-type.|FAD.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TCTCCGTGTTCCCCACGACCA	0.627													34	44					0	0	0.080422	0	0
TMEM178	130733	broad.mit.edu	37	2	39934218	39934218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:39934218G>A	uc002rrt.2	+	3	569	c.544G>A	c.(544-546)GGC>AGC	p.G182S	TMEM178_uc010fam.1_Intron	NM_152390	NP_689603	Q8NBL3	TM178_HUMAN	transmembrane protein 178 precursor	182	Helical; (Potential).					integral to membrane					0		all_hematologic(82;0.248)				TGGCTTCCTCGGCATGGCCGT	0.483													35	28					0	0	0.092188	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656659	40656659	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:40656659C>T	uc002rrx.2	-	1	786	c.762G>A	c.(760-762)AGG>AGA	p.R254R	SLC8A1_uc002rry.2_Silent_p.R254R|SLC8A1_uc002rrz.2_Silent_p.R254R|SLC8A1_uc002rsa.2_Silent_p.R254R|SLC8A1_uc002rsd.3_Silent_p.R254R|SLC8A1_uc002rsb.1_Silent_p.R254R|SLC8A1_uc010fan.1_Silent_p.R254R|SLC8A1_uc002rsc.1_Silent_p.R254R	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	254	Calmodulin-binding (Potential).|Cytoplasmic (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	ACAGAAGTCTCCTATCCGCTA	0.453													49	49					0	0	0.048971	0	0
LOC388955	388955	broad.mit.edu	37	2	63849828	63849828	+	Silent	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:63849828A>G	uc002sck.1	-	1	332	c.138T>C	c.(136-138)CCT>CCC	p.P46P		NR_003131				SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;												0						GTTTCTGGTCAGGGGTCACCT	0.557													22	37					0	0	0.091800	0	0
PLEK	5341	broad.mit.edu	37	2	68607989	68607989	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:68607989G>A	uc002sen.3	+	3	495	c.333G>A	c.(331-333)AGG>AGA	p.R111R	PLEK_uc010fde.2_Silent_p.R111R	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	111					actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		AATTTGCCAGGAAATCTACCA	0.463													63	84					0	0	0.048971	0	0
OR7E91P	79315	broad.mit.edu	37	2	71256050	71256050	+	RNA	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:71256050C>T	uc002sho.2	+	3		c.220C>T			OR7E91P_uc010fdz.2_RNA	NR_002185				Homo sapiens olfactory receptor, family 7, subfamily E, member 91 pseudogene, mRNA (cDNA clone IMAGE:3996998).												0						CCCAAGGTGTCCAAGTCACAC	0.473													4	2					0	0	0.009096	0	0
ELMOD3	84173	broad.mit.edu	37	2	85598616	85598616	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:85598616A>G	uc002spf.3	+	11	1203	c.538A>G	c.(538-540)AAG>GAG	p.K180E	ELMOD3_uc010fgg.2_Intron|ELMOD3_uc002spg.3_Missense_Mutation_p.K180E|ELMOD3_uc002sph.3_Missense_Mutation_p.K180E|ELMOD3_uc010ysn.1_Missense_Mutation_p.K180E|ELMOD3_uc010yso.1_RNA|ELMOD3_uc010ysp.1_Intron	NM_001135021	NP_001128493	Q96FG2	ELMD3_HUMAN	ELMO/CED-12 domain containing 3 isoform b	180	ELMO.				phagocytosis	cytoskeleton				ovary(2)	2						GACCATCTATAAGAAGCTGAC	0.552													37	45					0	0	0.086207	0	0
ANAPC1	64682	broad.mit.edu	37	2	112608394	112608394	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:112608394T>C	uc002thi.2	-	14	1856	c.1609A>G	c.(1609-1611)ACT>GCT	p.T537A		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	537					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						GGCTTTGGAGTACTAACGCCA	0.433													3	103					0	0	0.004672	0	0
IL1F7	27178	broad.mit.edu	37	2	113676334	113676334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:113676334C>T	uc002tij.2	+	5	647	c.605C>T	c.(604-606)TCA>TTA	p.S202L	IL1F7_uc002tik.2_Missense_Mutation_p.S181L|IL1F7_uc002til.2_Missense_Mutation_p.S162L|IL1F7_uc002tim.2_Missense_Mutation_p.S141L|IL1F7_uc002tin.2_Missense_Mutation_p.S176L	NM_014439	NP_055254	Q9NZH6	IL37_HUMAN	interleukin 1 family, member 7 isoform 1	202					immune response	cytosol|extracellular space|nucleus	cytokine activity|interleukin-1 receptor antagonist activity|interleukin-1 receptor binding				0						ATTGAATTTTCATTTCAACCA	0.458													19	47					0	0	0.055883	0	0
UGGT1	56886	broad.mit.edu	37	2	128870751	128870752	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:128870751_128870752GG>AA	uc002tps.2	+	6	793_794	c.615_616GG>AA	c.(613-618)GAGGAA>GAAAAA	p.E206K	UGGT1_uc010fme.1_Missense_Mutation_p.E81K|UGGT1_uc002tpr.2_Missense_Mutation_p.E182K	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	206					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TTGGCTCTGAGGAATTTTCCAA	0.351													30	45					0	0	0.004672	0	0
UGGT1	56886	broad.mit.edu	37	2	128922363	128922363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:128922363C>T	uc002tps.2	+	26	3063	c.2885C>T	c.(2884-2886)CCA>CTA	p.P962L	UGGT1_uc010fme.1_Missense_Mutation_p.P837L|UGGT1_uc002tpr.2_Missense_Mutation_p.P938L	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	962					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						AAAGGAGATCCAAGAATCGAG	0.368													22	32					0	0	0.099896	0	0
CXCR4	7852	broad.mit.edu	37	2	136873442	136873442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:136873442C>T	uc002tuz.2	-	2	151	c.56G>A	c.(55-57)GGG>GAG	p.G19E	CXCR4_uc002tuy.2_Missense_Mutation_p.G23E|CXCR4_uc010fnk.2_Missense_Mutation_p.G4E	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	19	Important for chemokine binding, signaling and HIV-1 coreceptor activity.|Extracellular.			Missing: Reduced CXCL12 binding. No effect on signaling.|Missing: Reduced CXCL12 binding. Impaired signaling. Reduced coreceptor activity for HIV-1 isolates LAI and NDK.	activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	GTCATAGTCCCCTGAGCCCAT	0.423													54	50					0	0	0.048971	0	0
LRP1B	53353	broad.mit.edu	37	2	140992371	140992371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:140992371C>T	uc002tvj.1	-	90	14615	c.13643G>A	c.(13642-13644)GGA>GAA	p.G4548E		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4548	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		agttagtggtcctttcaaatc	0.085										TSP Lung(27;0.18)			9	21					0	0	0.093190	0	0
CYTIP	9595	broad.mit.edu	37	2	158272404	158272404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:158272404C>T	uc002tzj.1	-	8	937	c.865G>A	c.(865-867)GAG>AAG	p.E289K	CYTIP_uc010zcl.1_Missense_Mutation_p.E183K	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	289	Ser-rich.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TCATCCCCCTCCTTGGGGATA	0.542													37	48					0	0	0.092188	0	0
XIRP2	129446	broad.mit.edu	37	2	168101652	168101652	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:168101652G>A	uc002udx.2	+	8	3768	c.3750G>A	c.(3748-3750)AAG>AAA	p.K1250K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.K1075K|XIRP2_uc010fpq.2_Silent_p.K1028K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1075					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAATTGATAAGATAAAAGAAA	0.338													29	28					0	0	0.041601	0	0
TTN	7273	broad.mit.edu	37	2	179392412	179392412	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179392412C>T	uc010zfg.1	-	311	99961	c.99737G>A	c.(99736-99738)GGA>GAA	p.G33246E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G26941E|TTN_uc010zfi.1_Missense_Mutation_p.G26874E|TTN_uc010zfj.1_Missense_Mutation_p.G26749E|TTN_uc002umq.2_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	34173							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGAGAAGCTTCCTTGCAAGCT	0.483													10	17					0	0	0.093190	0	0
TTN	7273	broad.mit.edu	37	2	179432386	179432386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179432386C>T	uc010zfg.1	-	275	70993	c.70769G>A	c.(70768-70770)AGA>AAA	p.R23590K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R17285K|TTN_uc010zfi.1_Missense_Mutation_p.R17218K|TTN_uc010zfj.1_Missense_Mutation_p.R17093K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24517							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAATTCATATCTTTGATCTTC	0.408													21	28					0	0	0.069288	0	0
TTN	7273	broad.mit.edu	37	2	179440352	179440352	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179440352A>C	uc010zfg.1	-	275	63027	c.62803T>G	c.(62803-62805)TGT>GGT	p.C20935G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.C14630G|TTN_uc010zfi.1_Missense_Mutation_p.C14563G|TTN_uc010zfj.1_Missense_Mutation_p.C14438G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21862							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAATATTCACACCCTTCAGAC	0.438													9	57					0	0	0.062417	0	0
TTN	7273	broad.mit.edu	37	2	179458554	179458554	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179458554C>T	uc010zfg.1	-	247	50993	c.50769G>A	c.(50767-50769)GAG>GAA	p.E16923E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.E10618E|TTN_uc010zfi.1_Silent_p.E10551E|TTN_uc010zfj.1_Silent_p.E10426E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17850							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTGGTCACCTCATCAAAAC	0.388													7	4					0	0	0.029380	0	0
TTN	7273	broad.mit.edu	37	2	179529447	179529447	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179529447C>T	uc010zfk.1	-	12	1122	c.574G>A	c.(574-576)GAA>AAA	p.E192K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGACAATTTCTTGGAGAGCT	0.393													12	14					0	0	0.105934	0	0
TTN	7273	broad.mit.edu	37	2	179585769	179585769	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179585769G>A	uc010zfg.1	-	76	19469	c.19245C>T	c.(19243-19245)TTC>TTT	p.F6415F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F3076F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7342							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGAATTAATGAATGACATGT	0.423													29	48					0	0	0.059317	0	0
TTN	7273	broad.mit.edu	37	2	179587872	179587872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179587872C>T	uc010zfg.1	-	72	18354	c.18130G>A	c.(18130-18132)GAA>AAA	p.E6044K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E2705K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6971							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCAGAATTTCCAGGATACAA	0.393													6	11					0	0	0.021553	0	0
TTN	7273	broad.mit.edu	37	2	179615343	179615343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179615343C>T	uc002unb.2	-	46	12008	c.11784G>A	c.(11782-11784)ATG>ATA	p.M3928I	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAAAAAATCTCATGTTTTCTT	0.343													4	9					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179616292	179616292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179616292C>T	uc002unb.2	-	46	11059	c.10835G>A	c.(10834-10836)AGA>AAA	p.R3612K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCGTTCTGCTCTTTTCAGAAA	0.383													41	44					0	0	0.111260	0	0
TTN	7273	broad.mit.edu	37	2	179621496	179621496	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:179621496C>T	uc010zfh.1	-	44	10418	c.10194G>A	c.(10192-10194)GGG>GGA	p.G3398G	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTACATCTTTCCCAGAACTTT	0.393													8	13					0	0	0.080935	0	0
ANKAR	150709	broad.mit.edu	37	2	190571836	190571836	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:190571836A>T	uc002uqw.1	+	8	1870	c.1870A>T	c.(1870-1872)AAT>TAT	p.N624Y	ANKAR_uc002uqu.2_RNA	NM_144708	NP_653309	Q7Z5J8	ANKAR_HUMAN	ankyrin and armadillo repeat containing	695	ANK 5.					integral to membrane	binding			ovary(2)|pancreas(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00156)|Epithelial(96;0.0256)|all cancers(119;0.0744)			aataaaattaaatattCCTGA	0.289													6	4					0	0	0.021553	0	0
SDPR	8436	broad.mit.edu	37	2	192701266	192701266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:192701266C>T	uc002utb.2	-	2	991	c.661G>A	c.(661-663)GAA>AAA	p.E221K		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	221	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TCCACCTTTTCCTCGGCACTG	0.483													63	72					0	0	0.048971	0	0
DNAH7	56171	broad.mit.edu	37	2	196759756	196759756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:196759756C>T	uc002utj.3	-	30	4941	c.4840G>A	c.(4840-4842)GGA>AGA	p.G1614R		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1614	ATP (Potential).|AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CTAGTTTTTCCTCCAAATGGT	0.318													20	14					0	0	0.069288	0	0
STRADB	55437	broad.mit.edu	37	2	202339374	202339374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:202339374C>T	uc002uyd.3	+	6	685	c.320C>T	c.(319-321)GCC>GTC	p.A107V		NM_018571	NP_061041	Q9C0K7	STRAB_HUMAN	STE20-related kinase adaptor beta	107	Protein kinase.				activation of protein kinase activity|cell cycle arrest|insulin receptor signaling pathway|protein export from nucleus|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|protein binding|protein kinase activity			skin(2)|stomach(1)|lung(1)	4						TCCTAGAAAGCCGTGATTCTA	0.383													42	41					0	0	0.098360	0	0
INO80D	54891	broad.mit.edu	37	2	206921284	206921284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:206921284G>A	uc002vaz.3	-	4	1007	c.602C>T	c.(601-603)TCA>TTA	p.S201L		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	201					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						CTGCTGCTGTGAAGGTGCAGG	0.527													7	13					0	0	0.038147	0	0
IDH1	3417	broad.mit.edu	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	A	A	rs121913499		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:209113113G>A	uc002vcs.2	-	4	640	c.394C>T	c.(394-396)CGT>TGT	p.R132C	IDH1_uc002vct.2_Missense_Mutation_p.R132C|IDH1_uc002vcu.2_Missense_Mutation_p.R132C	NM_005896	NP_005887	O75874	IDHC_HUMAN	isocitrate dehydrogenase 1 (NADP+), soluble	132		Substrate.	R -> G (in a glioma sample; glioblastoma multiforme; somatic mutation).|R -> L (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> S (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> H (in a glioma sample; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha-ketoglutarate but instead alpha-ketoglutarate is converted to R(-)-2-hydroxyglutarate).|R -> C (in colorectal cancer and glioma samples; glioblastoma multiforme; somatic mutation; abolishes magnesium binding and alters enzyme activity so that isocitrate is no longer converted to alpha- ketoglutarate but instead alpha- ketoglutarate is converted to R(-)-2- hydroxyglutarate).		2-oxoglutarate metabolic process|cellular lipid metabolic process|glyoxylate cycle|isocitrate metabolic process|NADPH regeneration|tricarboxylic acid cycle	cytosol|peroxisomal matrix	isocitrate dehydrogenase (NADP+) activity|magnesium ion binding|NAD binding|protein homodimerization activity	p.R132H(2023)|p.R132C(344)|p.R132?(210)|p.R132G(117)|p.R132S(79)|p.R132L(58)|p.R132V(1)|p.G131_R132>VL(1)		central_nervous_system(2156)|haematopoietic_and_lymphoid_tissue(606)|bone(74)|thyroid(22)|large_intestine(4)|skin(2)|prostate(2)|autonomic_ganglia(1)|soft_tissue(1)	2868				Epithelial(149;0.0322)|LUSC - Lung squamous cell carcinoma(261;0.0711)|Lung(261;0.136)		TAAGCATGACGACCTATGATG	0.398			Mis		gliobastoma 								45	40					0	0	0.048971	0	0
C2orf24	27013	broad.mit.edu	37	2	220037718	220037718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:220037718G>A	uc002vju.3	-	8	975	c.823C>T	c.(823-825)CGT>TGT	p.R275C	NHEJ1_uc002vjq.3_5'Flank|SLC23A3_uc010zkr.1_5'Flank|SLC23A3_uc010zks.1_5'Flank|SLC23A3_uc010fwb.2_5'Flank|C2orf24_uc002vjv.2_Missense_Mutation_p.R275C	NM_015680	NP_056495	Q9BV87	CNPD1_HUMAN	hypothetical protein LOC27013	275					regulation of cyclin-dependent protein kinase activity	integral to membrane	protein kinase binding				0		Renal(207;0.0915)		Epithelial(149;8.92e-07)|all cancers(144;0.000151)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGGAGGCAACGGGAGGTCAGT	0.617													4	136					0	0	0.014758	0	0
COL4A4	1286	broad.mit.edu	37	2	227915811	227915811	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:227915811C>T	uc010zlt.1	-	33	3686	c.3032G>A	c.(3031-3033)GGA>GAA	p.G1011E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1011	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCTGTGAAATCCAGGTGGTCC	0.547													45	77					0	0	0.048971	0	0
ARMC9	80210	broad.mit.edu	37	2	232100035	232100035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:232100035C>T	uc002vrq.3	+	8	833	c.721C>T	c.(721-723)CTC>TTC	p.L241F	ARMC9_uc002vrp.3_Missense_Mutation_p.L241F	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	241							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		CTACCACAATCTCATTGGAGT	0.488													23	30					0	0	0.099896	0	0
NGEF	25791	broad.mit.edu	37	2	233834931	233834931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:233834931C>T	uc002vts.2	-	3	624	c.376G>A	c.(376-378)GAA>AAA	p.E126K		NM_019850	NP_062824	Q8N5V2	NGEF_HUMAN	neuronal guanine nucleotide exchange factor	126	Regulatory region; modulates activity toward RHOA, RAC1 and CDC42 (By similarity).				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|growth cone|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)|skin(1)	7		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.00793)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;8.65e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(119;0.00984)|GBM - Glioblastoma multiforme(43;0.0604)		TACCTCATTTCCTGGGCTCCT	0.498													29	40					0	0	0.054565	0	0
TRPM8	79054	broad.mit.edu	37	2	234878989	234878989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:234878989G>A	uc002vvh.2	+	17	2314	c.2274G>A	c.(2272-2274)ATG>ATA	p.M758I	TRPM8_uc010fyj.2_Intron	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	758	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	TGCTGCTCATGGATTTCCATT	0.557													199	267					0	0	0.048971	0	0
KLHL30	377007	broad.mit.edu	37	2	239059547	239059547	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr2:239059547A>T	uc002vxr.1	+	7	1557	c.1524A>T	c.(1522-1524)GAA>GAT	p.E508D		NM_198582	NP_940984	Q0D2K2	KLH30_HUMAN	kelch-like 30	526	Kelch 6.										0		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_hematologic(139;0.158)|all_lung(227;0.198)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;4.71e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.02e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.63e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000109)|Lung(119;0.0108)|LUSC - Lung squamous cell carcinoma(224;0.0253)		AGGGCATGGAAGGTGACTACC	0.677													12	15					0	0	0.028581	0	0
ZNF343	79175	broad.mit.edu	37	20	2464422	2464422	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:2464422G>A	uc002wge.1	-	6	1673	c.1185C>T	c.(1183-1185)ACC>ACT	p.T395T	ZNF343_uc010gao.1_Silent_p.T395T|ZNF343_uc002wgd.1_Silent_p.T305T	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	395	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GTTTTCTGAGGGTTGACTTAT	0.498													32	40					0	0	0.054565	0	0
CDC25B	994	broad.mit.edu	37	20	3784181	3784181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:3784181G>A	uc002wjn.2	+	14	2265	c.1487G>A	c.(1486-1488)CGC>CAC	p.R496H	CDC25B_uc010zqk.1_Missense_Mutation_p.R432H|CDC25B_uc010zql.1_Missense_Mutation_p.R418H|CDC25B_uc010zqm.1_Missense_Mutation_p.R405H|CDC25B_uc002wjl.2_Missense_Mutation_p.R384H|CDC25B_uc002wjm.2_Missense_Mutation_p.R384H|CDC25B_uc002wjo.2_Missense_Mutation_p.R482H|CDC25B_uc002wjp.2_Missense_Mutation_p.R455H|CDC25B_uc002wjq.2_Missense_Mutation_p.R296H|CDC25B_uc010gbc.2_Intron	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	496	Rhodanese.				cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						CGTGGGCCCCGCATGTGAGTC	0.612													3	98					0	0	0.014758	0	0
BMP2	650	broad.mit.edu	37	20	6759103	6759103	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:6759103C>T	uc002wmu.1	+	3	1343	c.558C>T	c.(556-558)TTC>TTT	p.F186F		NM_001200	NP_001191	P12643	BMP2_HUMAN	bone morphogenetic protein 2 preproprotein	186					BMP signaling pathway involved in heart induction|bone mineralization involved in bone maturation|cardiac cell differentiation|cardiac epithelial to mesenchymal transition|cartilage development|growth|negative regulation of cell cycle|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|osteoblast differentiation|pathway-restricted SMAD protein phosphorylation|positive regulation of apoptosis|positive regulation of bone mineralization|positive regulation of cartilage development|positive regulation of endothelial cell proliferation|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of phosphatase activity|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	activin receptor activity, type II|BMP receptor binding|cytokine activity|growth factor activity|phosphatase activator activity|protein heterodimerization activity|SMAD binding|transforming growth factor beta receptor binding			ovary(1)|breast(1)	2					Simvastatin(DB00641)	ACTCGAAATTCCCCGTGACCA	0.458													30	34					0	0	0.045705	0	0
PAK7	57144	broad.mit.edu	37	20	9561263	9561263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:9561263C>T	uc002wnl.2	-	5	1064	c.519G>A	c.(517-519)ATG>ATA	p.M173I	PAK7_uc002wnk.2_Missense_Mutation_p.M173I|PAK7_uc002wnj.2_Missense_Mutation_p.M173I|PAK7_uc010gby.1_Missense_Mutation_p.M173I	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	173	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GCTTCATTTTCATTACGTGCC	0.463													73	78					0	0	0.048971	0	0
FAM182B	728882	broad.mit.edu	37	20	25848606	25848606	+	RNA	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:25848606G>A	uc002wvd.1	-	1		c.181C>T								Homo sapiens cDNA FLJ30282 fis, clone BRACE2002803.												0						atcaccgtccgggcaggcctg	0													6	9					0	0	0.058154	0	0
CEP250	11190	broad.mit.edu	37	20	34090782	34090782	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:34090782C>T	uc002xcm.2	+	31	5256	c.4585C>T	c.(4585-4587)CTA>TTA	p.L1529L	CEP250_uc010zve.1_Silent_p.L897L	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	1529	Gln/Glu-rich.|Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			GCATCAGCTTCTAGAACTTGA	0.522													27	44					0	0	0.030593	0	0
LBP	3929	broad.mit.edu	37	20	36992676	36992676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:36992676G>A	uc002xic.1	+	7	735	c.700G>A	c.(700-702)GAA>AAA	p.E234K		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	234					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				TAGCTTAGTGGAAGCCCCTCG	0.547													35	39					0	0	0.039052	0	0
WFDC8	90199	broad.mit.edu	37	20	44181842	44181842	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:44181842G>A	uc002xow.2	-	5	598	c.519C>T	c.(517-519)ATC>ATT	p.I173I	WFDC8_uc002xox.2_Silent_p.I173I	NM_181510	NP_852611	Q8IUA0	WFDC8_HUMAN	WAP four-disulfide core domain 8 precursor	173	WAP 2.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				GGGGACAATCGATGTCACTGT	0.463													43	40					0	0	0.042209	0	0
WFDC11	259239	broad.mit.edu	37	20	44278037	44278037	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:44278037C>T	uc002xpa.2	-	4	297	c.102G>A	c.(100-102)AGG>AGA	p.R34R		NM_147197	NP_671730	Q8NEX6	WFD11_HUMAN	WAP four-disulfide core domain 11 precursor	34						extracellular region					0		Myeloproliferative disorder(115;0.0122)				ACAATTCCTTCCCTGAAATTG	0.388													54	72					0	0	0.048971	0	0
ZFP64	55734	broad.mit.edu	37	20	50769633	50769633	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:50769633G>A	uc002xwl.2	-	6	1447	c.1098C>T	c.(1096-1098)TGC>TGT	p.C366C	ZFP64_uc002xwk.2_Intron|ZFP64_uc002xwm.2_Silent_p.C364C|ZFP64_uc002xwn.2_Silent_p.C312C	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	366					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GGCGGTCGGTGCAGTGGATAC	0.577													73	78					0	0	0.048971	0	0
ZNF831	128611	broad.mit.edu	37	20	57768441	57768441	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr20:57768441C>T	uc002yan.2	+	1	2367	c.2367C>T	c.(2365-2367)GCC>GCT	p.A789A		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	789						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AAGGAGGTGCCCGAGGTGTGG	0.657													17	19					0	0	0.049695	0	0
TPTE	7179	broad.mit.edu	37	21	10914420	10914420	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr21:10914420G>A	uc002yip.1	-	21	1667	c.1299C>T	c.(1297-1299)ATC>ATT	p.I433I	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.I415I|TPTE_uc002yir.1_Silent_p.I395I|TPTE_uc010gkv.1_Silent_p.I295I	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	433	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TTTCTATTTGGATTTTTAGAT	0.313													5	30					0	0	0.014758	0	0
SETD4	54093	broad.mit.edu	37	21	37417938	37417938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr21:37417938G>A	uc002yuw.1	-	5	2041	c.668C>T	c.(667-669)CCG>CTG	p.P223L	SETD4_uc002yux.1_Missense_Mutation_p.P199L|SETD4_uc002yuu.2_RNA|SETD4_uc002yuv.2_Missense_Mutation_p.P223L|SETD4_uc002yuy.2_Missense_Mutation_p.P223L|SETD4_uc002yuz.2_Missense_Mutation_p.P199L|SETD4_uc002yva.2_Missense_Mutation_p.P199L	NM_017438	NP_059134	Q9NVD3	SETD4_HUMAN	SET domain containing 4 isoform a	223	SET.									large_intestine(1)|ovary(1)	2						ACAGGTGTCCGGCTCTGCAGA	0.572													41	44					0	0	0.045515	0	0
DSCAM	1826	broad.mit.edu	37	21	41725546	41725546	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr21:41725546C>T	uc002yyq.1	-	5	1232	c.780G>A	c.(778-780)AAG>AAA	p.K260K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	260	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCATGTTGTCCTTCAGCCAGC	0.582													25	23					0	0	0.108266	0	0
UBASH3A	53347	broad.mit.edu	37	21	43855019	43855019	+	Missense_Mutation	SNP	G	A	A	rs145463901		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr21:43855019G>A	uc002zbe.2	+	10	1384	c.1348G>A	c.(1348-1350)GAT>AAT	p.D450N	UBASH3A_uc002zbf.2_Missense_Mutation_p.D412N|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Missense_Mutation_p.D412N	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	450	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						CTTTGAAAACGATCCCCCATT	0.433													52	49					0	0	0.048971	0	0
CLTCL1	8218	broad.mit.edu	37	22	19209609	19209609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr22:19209609G>A	uc002zpb.2	-	16	2501	c.2426C>T	c.(2425-2427)CCT>CTT	p.P809L	CLTCL1_uc011agv.1_Missense_Mutation_p.P809L|CLTCL1_uc011agw.1_Missense_Mutation_p.P809L	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	809	Proximal segment.|Heavy chain arm.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					GGTCCGGCTAGGGTTGACCTA	0.473			T	?	ALCL								92	115					0	0	0.048971	0	0
CDC45	8318	broad.mit.edu	37	22	19486669	19486669	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr22:19486669C>T	uc002zpr.2	+	9	775	c.699C>T	c.(697-699)ATC>ATT	p.I233I	CDC45_uc011agz.1_Silent_p.I228I|CDC45_uc011aha.1_Silent_p.I265I|CDC45_uc002zps.2_Silent_p.I233I|CDC45_uc002zpt.2_Silent_p.I187I	NM_003504	NP_003495	O75419	CDC45_HUMAN	CDC45-like	233					DNA replication checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	centrosome|nucleoplasm	protein binding			lung(1)	1						AAGACAAGATCACTCAGTAAG	0.572													55	74					0	0	0.048971	0	0
MYO18B	84700	broad.mit.edu	37	22	26168438	26168438	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr22:26168438C>T	uc003abz.1	+	7	2080	c.1830C>T	c.(1828-1830)GTC>GTT	p.V610V	MYO18B_uc003aca.1_Silent_p.V491V|MYO18B_uc010guy.1_Silent_p.V491V|MYO18B_uc010guz.1_Silent_p.V491V|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_Silent_p.V123V	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	610	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						ATCTGATTGTCCTCCAGCCCC	0.637													29	32					0	0	0.034045	0	0
FAM116B	414918	broad.mit.edu	37	22	50750841	50750841	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr22:50750841G>A	uc011aru.1	-	20	1638	c.1566C>T	c.(1564-1566)ATC>ATT	p.I522I	FAM116B_uc011arv.1_Silent_p.I522I	NM_001001794	NP_001001794	Q8NEG7	F116B_HUMAN	family with sequence similarity 116, member B	522											0		all_cancers(38;4.34e-09)|all_epithelial(38;3.03e-08)|all_lung(38;0.00141)|Breast(42;0.00387)|Lung NSC(38;0.0199)|Ovarian(80;0.104)|Lung SC(80;0.162)|Hepatocellular(38;0.178)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		TCCAGGTCTCGATGTTCTGCA	0.622													13	12					0	0	0.043863	0	0
NUP210	23225	broad.mit.edu	37	3	13415253	13415253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:13415253C>T	uc003bxv.1	-	12	1635	c.1552G>A	c.(1552-1554)GAT>AAT	p.D518N	NUP210_uc003bxx.2_Missense_Mutation_p.D190N	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	518	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TTCTGCACATCATGTGCCTGG	0.582													43	41					0	0	0.048971	0	0
PLCL2	23228	broad.mit.edu	37	3	17056374	17056374	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:17056374C>T	uc011awc.1	+	6	3070	c.2965C>T	c.(2965-2967)CTG>TTG	p.L989L	PLCL2_uc011awd.1_Silent_p.L871L	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	997					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						GCCGGAGGTTCTGAAGAAGAT	0.502													68	90					0	0	0.048971	0	0
CELSR3	1951	broad.mit.edu	37	3	48677985	48677985	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:48677985C>T	uc003cul.2	-	34	9314	c.9033G>A	c.(9031-9033)CTG>CTA	p.L3011L	CELSR3_uc003cuf.1_Silent_p.L3109L|CELSR3_uc010hkf.2_Silent_p.L301L|CELSR3_uc010hkg.2_Silent_p.L994L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	3011	Cytoplasmic (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		ACCGGTTCTTCAGGATGCCTG	0.627													7	8					0	0	0.038147	0	0
CELSR3	1951	broad.mit.edu	37	3	48683676	48683676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:48683676G>A	uc003cul.2	-	22	7591	c.7310C>T	c.(7309-7311)CCC>CTC	p.P2437L	CELSR3_uc003cuf.1_Missense_Mutation_p.P2507L|CELSR3_uc010hkf.2_5'Flank|CELSR3_uc010hkg.2_Missense_Mutation_p.P420L	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2437	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GTTCATGACGGGGTTCTGAGG	0.612													21	35					0	0	0.030593	0	0
RFT1	91869	broad.mit.edu	37	3	53155759	53155759	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:53155759G>A	uc003dgj.2	-	5	568	c.514C>T	c.(514-516)CTG>TTG	p.L172L	RFT1_uc003dgk.2_Silent_p.L133L	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	172	Helical; (Potential).				carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		GGCAACCACAGCACGAGAAAA	0.408													12	20					0	0	0.033300	0	0
FRMD4B	23150	broad.mit.edu	37	3	69237038	69237038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:69237038C>T	uc003dnv.2	-	19	2092	c.1802G>A	c.(1801-1803)CGA>CAA	p.R601Q	FRMD4B_uc003dnw.2_Intron|FRMD4B_uc003dnu.2_Missense_Mutation_p.R253Q|FRMD4B_uc011bga.1_Missense_Mutation_p.R445Q	NM_015123	NP_055938	Q9Y2L6	FRM4B_HUMAN	FERM domain containing 4B	601						cytoplasm|cytoskeleton	binding			ovary(3)|central_nervous_system(1)	4		Lung NSC(201;0.0138)|Prostate(884;0.11)		BRCA - Breast invasive adenocarcinoma(55;0.000201)|Epithelial(33;0.00141)|LUSC - Lung squamous cell carcinoma(21;0.00999)|Lung(16;0.0182)		TGAACTTGATCGCTGCCCAGG	0.323													4	5					0	0	0.009096	0	0
OR5H14	403273	broad.mit.edu	37	3	97869149	97869149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:97869149G>A	uc003dsg.1	+	1	920	c.920G>A	c.(919-921)AGA>AAA	p.R307K		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ATGTTCAAAAGAAATGATGTT	0.303													11	5					0	0	0.093190	0	0
OR5H2	79310	broad.mit.edu	37	3	98002110	98002110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:98002110C>T	uc003dsj.1	+	1	379	c.379C>T	c.(379-381)CGC>TGC	p.R127C		NM_001005482	NP_001005482	Q8NGV7	OR5H2_HUMAN	olfactory receptor, family 5, subfamily H,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GGCATATGATCGCTATGTAGC	0.378													41	39					0	0	0.048971	0	0
ZPLD1	131368	broad.mit.edu	37	3	102181165	102181165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:102181165G>A	uc003dvs.1	+	13	1505	c.623G>A	c.(622-624)GGA>GAA	p.G208E	ZPLD1_uc003dvt.1_Missense_Mutation_p.G224E|ZPLD1_uc011bhg.1_Missense_Mutation_p.G208E	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	208	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						CCCAGTATAGGATTACCTTTG	0.353													27	46					0	0	0.050027	0	0
ZPLD1	131368	broad.mit.edu	37	3	102196336	102196336	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:102196336G>A	uc003dvs.1	+	18	2004	c.1122G>A	c.(1120-1122)CTG>CTA	p.L374L	ZPLD1_uc003dvt.1_Silent_p.L390L|ZPLD1_uc011bhg.1_Silent_p.L374L	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	374	Helical; (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						CCAGCGCACTGATATCAGGAA	0.468													109	101					0	0	0.048971	0	0
RETNLB	84666	broad.mit.edu	37	3	108474710	108474710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:108474710G>A	uc003dxh.2	-	3	349	c.251C>T	c.(250-252)TCG>TTG	p.S84L		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	84					cell proliferation	extracellular region	hormone activity			skin(1)	1						AACATCCCACGAACCACAGCC	0.577													52	66					0	0	0.048971	0	0
GUCA1C	9626	broad.mit.edu	37	3	108635019	108635019	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:108635019C>T	uc003dxj.2	-	3	465	c.397G>A	c.(397-399)GAA>AAA	p.E133K	GUCA1C_uc003dxk.2_Missense_Mutation_p.E133K	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	133	EF-hand 4.				signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						TTGATGAATTCTTCAGGACTC	0.403													59	68					0	0	0.048971	0	0
MORC1	27136	broad.mit.edu	37	3	108822756	108822756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:108822756C>T	uc003dxl.2	-	4	250	c.163G>A	c.(163-165)GAA>AAA	p.E55K	MORC1_uc011bhn.1_Missense_Mutation_p.E55K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	55					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						TGCAGTTTTTCATTATCCACT	0.383													54	61					0	0	0.048971	0	0
CD80	941	broad.mit.edu	37	3	119263714	119263715	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:119263714_119263715CC>TT	uc003ecq.2	-	3	496	c.101_splice	c.e3-1	p.G34_splice	CD80_uc010hqt.1_Splice_Site_p.G34_splice|CD80_uc010hqu.1_Splice_Site_p.G34_splice|CD80_uc003ecr.1_Splice_Site_p.G34_splice	NM_005191	NP_005182	P33681	CD80_HUMAN	CD80 antigen precursor						interspecies interaction between organisms|intracellular signal transduction|positive regulation of granulocyte macrophage colony-stimulating factor biosynthetic process|positive regulation of interleukin-2 biosynthetic process|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of signal transduction|positive regulation of T-helper 1 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation	intracellular	coreceptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2					Abatacept(DB01281)	GTGGATAACACCTATGGAGAGG	0.441													11	9					0	0	0.004672	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:126707544T>G	uc003ejg.2	+	1	43	c.39T>G	c.(37-39)GGT>GGG	p.G13G		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	36	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CAGGCGGGGGTTCACAGCCCC	0.567													5	40					0	0	0.020292	0	0
PLXNA1	5361	broad.mit.edu	37	3	126739070	126739070	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:126739070C>T	uc003ejg.2	+	20	3856	c.3852C>T	c.(3850-3852)ATC>ATT	p.I1284I		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	1307	Potential.|Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AGACAGACATCCACGAGCTGA	0.637													42	50					0	0	0.048971	0	0
EEFSEC	60678	broad.mit.edu	37	3	128060553	128060553	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:128060553T>G	uc003eki.2	+	5	1302	c.1264T>G	c.(1264-1266)TGC>GGC	p.C422G	EEFSEC_uc003ekj.2_Missense_Mutation_p.C367G	NM_021937	NP_068756	P57772	SELB_HUMAN	eukaryotic elongation factor,	422						cytoplasm|nucleus	GTP binding|GTPase activity|translation elongation factor activity			ovary(1)	1						GCCCGTCACCTGCCCTCGGCT	0.622													33	62					0	0	0.069456	0	0
RHO	6010	broad.mit.edu	37	3	129251489	129251489	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:129251489C>T	uc003emt.2	+	4	905	c.810C>T	c.(808-810)AGC>AGT	p.S270S		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	270	Helical; Name=6; (Potential).				protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	CCTACGCCAGCGTGGCATTCT	0.572													27	28					0	0	0.041601	0	0
EPHB1	2047	broad.mit.edu	37	3	134670529	134670529	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:134670529C>T	uc003eqt.2	+	3	660	c.440C>T	c.(439-441)TCC>TTC	p.S147F	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.S147F	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	147	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GAGAGCTTCTCCCAGGTGGAC	0.493													60	80					0	0	0.048971	0	0
SLC2A2	6514	broad.mit.edu	37	3	170724939	170724939	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:170724939G>A	uc003fhe.1	-	5	919	c.610C>T	c.(610-612)CAG>TAG	p.Q204*	SLC2A2_uc003fhf.1_Nonsense_Mutation_p.Q31*|SLC2A2_uc011bpu.1_Nonsense_Mutation_p.Q77*	NM_000340	NP_000331	P11168	GTR2_HUMAN	solute carrier family 2 (facilitated glucose	204	Helical; Name=5; (Potential).				carbohydrate metabolic process|cellular lipid metabolic process|endocrine pancreas development|energy reserve metabolic process|regulation of insulin secretion	integral to plasma membrane|membrane fraction	D-glucose transmembrane transporter activity			ovary(1)|central_nervous_system(1)	2	all_cancers(22;1.41e-19)|all_lung(20;1.59e-15)|Lung NSC(18;7.08e-15)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;1.1e-14)|Lung(28;2.99e-14)			GTTTTTACCTGACTAATAAGA	0.483													17	12					0	0	0.028581	0	0
NLGN1	22871	broad.mit.edu	37	3	173322660	173322660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:173322660G>A	uc003fio.1	+	3	695	c.272G>A	c.(271-273)GGG>GAG	p.G91E	NLGN1_uc010hww.1_Missense_Mutation_p.G91E|NLGN1_uc003fip.1_Missense_Mutation_p.G91E	NM_014932	NP_055747	Q8N2Q7	NLGN1_HUMAN	neuroligin 1	91	Extracellular (Potential).				calcium-dependent cell-cell adhesion|neuron cell-cell adhesion|neuronal signal transduction|positive regulation of dendritic spine development|positive regulation of excitatory postsynaptic membrane potential|positive regulation of intracellular protein kinase cascade|positive regulation of synaptogenesis|protein targeting|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|regulation of N-methyl-D-aspartate selective glutamate receptor activity|synapse assembly|synaptic vesicle targeting	cell junction|cell surface|dendrite|integral to plasma membrane|postsynaptic density|postsynaptic membrane	cell adhesion molecule binding|neurexin binding|receptor activity			lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)|ovary(1)|pancreas(1)	7	Ovarian(172;0.0025)		LUSC - Lung squamous cell carcinoma(14;5.36e-13)|Lung(28;9.49e-13)			CCACCAACAGGGGAACGTCGT	0.448													44	67					0	0	0.045515	0	0
SENP2	59343	broad.mit.edu	37	3	185330413	185330413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:185330413G>A	uc003fpn.2	+	9	1007	c.836G>A	c.(835-837)AGG>AAG	p.R279K	SENP2_uc011brv.1_Missense_Mutation_p.R269K|SENP2_uc011brw.1_Missense_Mutation_p.R92K	NM_021627	NP_067640	Q9HC62	SENP2_HUMAN	SUMO1/sentrin/SMT3 specific protease 2	279					mRNA transport|protein desumoylation|protein transport|proteolysis|regulation of Wnt receptor signaling pathway|transmembrane transport|Wnt receptor signaling pathway	cytoplasm|nuclear membrane|nuclear pore	protein binding|SUMO-specific protease activity				0	all_cancers(143;1.28e-10)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			GTTGAAACAAGGGGACCTCTA	0.308													15	13					0	0	0.069288	0	0
TBCCD1	55171	broad.mit.edu	37	3	186272727	186272727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:186272727G>A	uc003fqg.2	-	5	1135	c.1006C>T	c.(1006-1008)CGT>TGT	p.R336C	TBCCD1_uc011bry.1_Missense_Mutation_p.R336C|TBCCD1_uc003fqh.2_Missense_Mutation_p.R240C	NM_018138	NP_060608	Q9NVR7	TBCC1_HUMAN	TBCC domain containing 1	336	C-CAP/cofactor C-like.				cell morphogenesis|maintenance of centrosome location|maintenance of Golgi location|regulation of cell migration|regulation of cell shape	spindle pole centrosome	binding			large_intestine(1)|ovary(1)	2	all_cancers(143;3.75e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.3e-21)	GBM - Glioblastoma multiforme(93;0.0474)		TCGTTGCAACGATGAATCTTT	0.468													43	56					0	0	0.048971	0	0
TP63	8626	broad.mit.edu	37	3	189611994	189611994	+	Splice_Site	SNP	G	A	A	rs113056519		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:189611994G>A	uc003fry.2	+	14	1836	c.1747_splice	c.e14-1	p.D583_splice	TP63_uc003frz.2_Splice_Site_p.R551_splice|TP63_uc010hzc.1_Splice_Site_p.R503_splice|TP63_uc003fsc.2_Splice_Site_p.D489_splice|TP63_uc003fsd.2_Splice_Site_p.R457_splice|TP63_uc010hzd.1_Splice_Site_p.D404_splice	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1						anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CTGTTGCACAGGATCTGGCAA	0.493									Hay-Wells_syndrome	HNSCC(45;0.13)			32	26					0	0	0.050027	0	0
GAK	2580	broad.mit.edu	37	4	898519	898519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:898519G>A	uc003gbm.3	-	5	630	c.431C>T	c.(430-432)TCG>TTG	p.S144L	GAK_uc003gbn.3_Missense_Mutation_p.S65L|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.S8L	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	144	Protein kinase.		S -> L.		cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		CGTGTCGCACGAAAGGGGGCC	0.463													19	0					0	0	0.049695	0	0
ENAM	10117	broad.mit.edu	37	4	71508794	71508794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:71508794G>A	uc011caw.1	+	9	1932	c.1651G>A	c.(1651-1653)GAA>AAA	p.E551K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	551					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			ATACCCTGAGGAAATCCCTTC	0.428													51	132					0	0	0.048971	0	0
NPFFR2	10886	broad.mit.edu	37	4	72994493	72994493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:72994493G>A	uc003hgg.2	+	2	589	c.491G>A	c.(490-492)GGA>GAA	p.G164E	NPFFR2_uc010iig.1_Intron|NPFFR2_uc003hgi.2_Missense_Mutation_p.G65E|NPFFR2_uc003hgh.2_Missense_Mutation_p.G62E	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	164	Helical; Name=1; (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TGCATGATGGGAAATACTGTG	0.363													53	41					0	0	0.048971	0	0
CCNG2	901	broad.mit.edu	37	4	78082696	78082696	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:78082696C>T	uc003hkq.3	+	5	894	c.591C>T	c.(589-591)ATC>ATT	p.I197I	CCNG2_uc003hkn.3_Silent_p.I197I|CCNG2_uc011ccc.1_Silent_p.I197I|CCNG2_uc003hkp.3_Silent_p.I197I	NM_004354	NP_004345	Q16589	CCNG2_HUMAN	cyclin G2	197					cell cycle checkpoint|cell division|mitosis	cytoplasm				ovary(2)|lung(1)	3						GCCGACTCATCTTTTCAAAAG	0.289													11	22					0	0	0.105934	0	0
ANXA3	306	broad.mit.edu	37	4	79525461	79525461	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:79525461C>T	uc003hld.2	+	12	1130	c.820C>T	c.(820-822)CGA>TGA	p.R274*	ANXA3_uc003hle.2_Nonsense_Mutation_p.R235*|ANXA3_uc010ijk.2_Nonsense_Mutation_p.R235*	NM_005139	NP_005130	P12429	ANXA3_HUMAN	annexin A3	274	Annexin 4.				defense response to bacterium|neutrophil degranulation|phagocytosis|positive regulation of angiogenesis|positive regulation of endothelial cell migration|positive regulation of sequence-specific DNA binding transcription factor activity	phagocytic vesicle membrane|plasma membrane|specific granule	calcium ion binding|calcium-dependent phospholipid binding|phospholipase A2 inhibitor activity				0						TACTCTGAACCGAATAATGGT	0.368													44	31					0	0	0.048971	0	0
ADAD1	132612	broad.mit.edu	37	4	123333824	123333824	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:123333824T>C	uc003ieo.2	+	10	1341	c.1109T>C	c.(1108-1110)GTT>GCT	p.V370A	ADAD1_uc003iep.2_Missense_Mutation_p.V359A|ADAD1_uc003ieq.2_Missense_Mutation_p.V352A	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	370	A to I editase.				multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						TATCTGACTGTTTACTGTCCT	0.408													68	63					0	0	0.048971	0	0
FGA	2243	broad.mit.edu	37	4	155506994	155506994	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:155506994G>A	uc003iod.1	-	5	1645	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	FGA_uc003ioe.1_Silent_p.F529F|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	529	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	AGAAACCTGGGAATGTTTTTC	0.473													29	12					0	0	0.034045	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156634459	156634459	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:156634459G>A	uc003iov.2	+	8	1832	c.1296G>A	c.(1294-1296)CTG>CTA	p.L432L	GUCY1A3_uc010iqc.2_Silent_p.L432L|GUCY1A3_uc003iow.2_Silent_p.L432L|GUCY1A3_uc010iqd.2_Silent_p.L431L|GUCY1A3_uc003iox.2_Silent_p.L432L|GUCY1A3_uc003ioz.2_Silent_p.L197L|GUCY1A3_uc003ioy.2_Silent_p.L432L|GUCY1A3_uc010iqe.2_Silent_p.L197L|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Silent_p.L432L	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	432					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TGGGGAAGCTGAAGGCTACCC	0.527													19	15					0	0	0.083992	0	0
TDO2	6999	broad.mit.edu	37	4	156825262	156825262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:156825262G>A	uc003ipf.1	+	2	192	c.128G>A	c.(127-129)GGG>GAG	p.G43E		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	43	Substrate binding (By similarity).				tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	CTTATCTATGGGAACTACCTG	0.413													20	8					0	0	0.076483	0	0
NPY5R	4889	broad.mit.edu	37	4	164272156	164272156	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:164272156A>G	uc003iqn.2	+	4	913	c.731A>G	c.(730-732)AAC>AGC	p.N244S		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	244	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				GGATTGTCCAACAAAGAAAAC	0.383													20	55					0	0	0.055883	0	0
TRIM61	391712	broad.mit.edu	37	4	165891000	165891000	+	Missense_Mutation	SNP	G	A	A	rs142627348		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:165891000G>A	uc003iqw.2	-	3	766	c.155C>T	c.(154-156)CCC>CTC	p.P52L		NM_001012414	NP_001012414	Q5EBN2	TRI61_HUMAN	tripartite motif-containing 61	52	RING-type.					intracellular	zinc ion binding	p.P52L(1)		skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.109)		GBM - Glioblastoma multiforme(119;0.155)		AAAGGGGCAGGGGAAACTATC	0.453													12	52					0	0	0.093190	0	0
SPOCK3	50859	broad.mit.edu	37	4	167656173	167656173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:167656173C>T	uc003iri.1	-	12	1351	c.1210G>A	c.(1210-1212)GAT>AAT	p.D404N	SPOCK3_uc011cjp.1_Missense_Mutation_p.D361N|SPOCK3_uc011cjq.1_Missense_Mutation_p.D413N|SPOCK3_uc011cjr.1_Missense_Mutation_p.D284N|SPOCK3_uc003irj.1_Missense_Mutation_p.D401N|SPOCK3_uc011cjs.1_Missense_Mutation_p.D353N|SPOCK3_uc011cjt.1_Missense_Mutation_p.D312N|SPOCK3_uc011cju.1_Missense_Mutation_p.D297N|SPOCK3_uc011cjv.1_Missense_Mutation_p.D306N	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	404	Asp-rich.				signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		tcgtcttcatcatcctcatca	0.085													7	19					0	0	0.047766	0	0
PALLD	23022	broad.mit.edu	37	4	169611778	169611778	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:169611778G>A	uc011cjx.1	+	7	1571	c.1360G>A	c.(1360-1362)GAA>AAA	p.E454K	PALLD_uc003iru.2_Missense_Mutation_p.E454K|PALLD_uc003irv.2_Missense_Mutation_p.E72K	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	454	Ig-like C2-type 2.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		AGCCGTGGCGGAAGGCCAGGT	0.502									Pancreatic_Cancer_Familial_Clustering_of				67	38					0	0	0.048971	0	0
TRIML2	205860	broad.mit.edu	37	4	189012721	189012721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr4:189012721G>A	uc003izl.2	-	7	1006	c.970C>T	c.(970-972)CTT>TTT	p.L324F	TRIML2_uc003izj.1_Missense_Mutation_p.L152F|TRIML2_uc003izk.1_Missense_Mutation_p.L132F|TRIML2_uc011cle.1_Missense_Mutation_p.L399F	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	324	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		TCGCAGTCAAGGAAAACGCCA	0.532													41	105					0	0	0.042209	0	0
C5orf38	153571	broad.mit.edu	37	5	2752551	2752552	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:2752551_2752552GG>TA	uc003jdc.2	+	1	290_291	c.173_174GG>TA	c.(172-174)TGG>TTA	p.W58L	C5orf38_uc011cmg.1_Missense_Mutation_p.W58L|C5orf38_uc011cmh.1_RNA|C5orf38_uc011cmi.1_RNA|C5orf38_uc011cmj.1_RNA	NM_178569	NP_848664	Q86SI9	CEI_HUMAN	hypothetical protein LOC153571 precursor	58						extracellular region					0				GBM - Glioblastoma multiforme(108;0.205)		GGGGCGCCTTGGTTGCGAATTG	0.673													6	11					0	0	0.004672	0	0
DNAH5	1767	broad.mit.edu	37	5	13692188	13692188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:13692188C>T	uc003jfd.2	-	79	13822	c.13780G>A	c.(13780-13782)GAC>AAC	p.D4594N	DNAH5_uc003jfc.2_Missense_Mutation_p.D762N	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4594					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TAGTTCAAGTCCGTTCGAACT	0.463									Kartagener_syndrome				27	35					0	0	0.034045	0	0
Unknown	0	broad.mit.edu	37	5	17354347	17354348	+	RNA	DNP	CC	TT	TT			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:17354347_17354348CC>TT	uc003jfy.2	-	1		c.381_382GG>AA			uc003jfz.2_RNA					full-length cDNA clone CS0DC022YF01 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).																		TGTTCCCTCTCCTCATGAGATT	0.475													56	73					0	0	0.004672	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41052626	41052626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:41052626C>T	uc003jmj.3	-	12	1661	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K	HEATR7B2_uc003jmi.3_Intron	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	391							binding			ovary(6)|central_nervous_system(2)	8						GGCCATCCTTCCCGAGCTTCA	0.393													26	32					0	0	0.037714	0	0
C6	729	broad.mit.edu	37	5	41176815	41176815	+	Silent	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:41176815A>G	uc003jmk.2	-	8	1140	c.930T>C	c.(928-930)GAT>GAC	p.D310D	C6_uc003jml.1_Silent_p.D310D	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	310	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TAAAACTAGAATCCTAAATGG	0.308													8	8					0	0	0.058154	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382018	41382018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:41382018G>A	uc003jmm.1	-	2	824	c.722C>T	c.(721-723)TCG>TTG	p.S241L		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	241					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						TATAAAAAACGATCCCTTCTT	0.507													28	27					0	0	0.037714	0	0
TRPC7	57113	broad.mit.edu	37	5	135601998	135601998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:135601998C>T	uc003lbn.1	-	4	1255	c.1252G>A	c.(1252-1254)GAA>AAA	p.E418K	TRPC7_uc010jef.1_Missense_Mutation_p.E355K|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.E349K|TRPC7_uc010jei.1_Missense_Mutation_p.E294K|TRPC7_uc010jej.1_Intron	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	419	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GTGAAGGTTTCGTTTGGCAGG	0.398													49	3					0	0	0.048971	0	0
PCDHA2	56146	broad.mit.edu	37	5	140175559	140175559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:140175559C>T	uc003lhd.2	+	1	1116	c.1010C>T	c.(1009-1011)TCA>TTA	p.S337L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.S337L|PCDHA2_uc011czy.1_Missense_Mutation_p.S337L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	337	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTAAAATTTCATTAAAACTT	0.413													21	3					0	0	0.069288	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263656	140263656	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:140263656G>A	uc003lif.2	+	1	1803	c.1803G>A	c.(1801-1803)TCG>TCA	p.S601S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Silent_p.S601S|PCDHA13_uc003lid.2_Silent_p.S601S	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	601	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCCGATTCGGGCTACAATG	0.697													76	5					0	0	0.048971	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307514	140307514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:140307514C>T	uc003lih.2	+	1	1213	c.1037C>T	c.(1036-1038)TCG>TTG	p.S346L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.S346L	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	346	Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGACTCTTTCGAACCCAGTA	0.517													78	7					0	0	0.048971	0	0
PCDHB4	56131	broad.mit.edu	37	5	140501671	140501671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:140501671C>T	uc003lip.1	+	1	91	c.91C>T	c.(91-93)CGT>TGT	p.R31C		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	31	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGAGCCTATTCGTTATTCTGT	0.527													33	1					0	0	0.069456	0	0
PCYOX1L	78991	broad.mit.edu	37	5	148742246	148742246	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:148742246C>T	uc003lqk.2	+	2	197	c.135C>T	c.(133-135)CTC>CTT	p.L45L	PCYOX1L_uc003lql.2_Silent_p.L28L|PCYOX1L_uc010jgz.2_Silent_p.L28L|PCYOX1L_uc003lqm.2_5'UTR|PCYOX1L_uc003lqn.2_5'UTR	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	45					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCATTTTCTCCAGCAGCACT	0.587													58	3					0	0	0.048971	0	0
ADAM19	8728	broad.mit.edu	37	5	156915320	156915320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:156915320G>A	uc003lwz.2	-	21	2567	c.2503C>T	c.(2503-2505)CCT>TCT	p.P835S	ADAM19_uc003lww.1_Missense_Mutation_p.P568S|ADAM19_uc003lwy.2_Missense_Mutation_p.P434S|ADAM19_uc011ddr.1_Missense_Mutation_p.P766S	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	835	Cytoplasmic (Potential).|SH3-binding (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CGGCTTGGAGGAGGCCTCCTG	0.587													93	10					0	0	0.048971	0	0
RANBP17	64901	broad.mit.edu	37	5	170346460	170346460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:170346460C>T	uc003mba.2	+	11	1133	c.1117C>T	c.(1117-1119)CCT>TCT	p.P373S	RANBP17_uc003max.1_RNA|RANBP17_uc003may.1_RNA|RANBP17_uc003maz.1_RNA|RANBP17_uc010jjr.1_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	373					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GGAATTTGCTCCTAACAGTGT	0.323			T	TRD@	ALL								27	31					0	0	0.108266	0	0
ZNF354A	6940	broad.mit.edu	37	5	178140337	178140337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr5:178140337G>A	uc003mjj.2	-	5	740	c.542C>T	c.(541-543)CCC>CTC	p.P181L		NM_005649	NP_005640	O60765	Z354A_HUMAN	zinc finger protein 354A	181					regulation of transcription from RNA polymerase II promoter|sensory perception of sound|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(89;0.000536)|Renal(175;0.000159)|all_epithelial(37;0.000221)|Lung NSC(126;0.00308)|all_lung(126;0.00536)	all_cancers(40;0.0452)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.185)		TTTTTCTCTGGGAAGTATCTG	0.358													84	112					0	0	0.048971	0	0
PRPF4B	8899	broad.mit.edu	37	6	4060651	4060651	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:4060651A>C	uc003mvv.2	+	15	2916	c.2825A>C	c.(2824-2826)AAA>ACA	p.K942T	PRPF4B_uc003mvw.2_RNA|C6orf146_uc010jnq.1_Intron|PRPF4B_uc011dhv.1_RNA	NM_003913	NP_003904	Q13523	PRP4B_HUMAN	serine/threonine-protein kinase PRP4K	942	Protein kinase.					catalytic step 2 spliceosome	ATP binding|protein binding|protein serine/threonine kinase activity			breast(5)	5	Ovarian(93;0.0925)	all_hematologic(90;0.0895)				TTTTAGGAGAAAGTTACTGTT	0.338													18	22					0	0	0.043863	0	0
DSP	1832	broad.mit.edu	37	6	7572147	7572147	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:7572147G>A	uc003mxp.1	+	15	2255	c.1976G>A	c.(1975-1977)AGA>AAA	p.R659K	DSP_uc003mxq.1_Missense_Mutation_p.R659K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	659	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GAAACCAACAGAGAAAATGAC	0.433													41	45					0	0	0.111260	0	0
HIST1H2AA	221613	broad.mit.edu	37	6	25726745	25726745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:25726745C>T	uc003nfc.2	-	1	46	c.11G>A	c.(10-12)CGA>CAA	p.R4Q	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	4					nucleosome assembly	nucleosome|nucleus	DNA binding				0						CTGCTTCCCTCGTCCAGACAT	0.522													65	73					0	0	0.048971	0	0
BRD2	6046	broad.mit.edu	37	6	32948438	32948438	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:32948438C>T	uc003ocn.3	+	13	4050	c.2349C>T	c.(2347-2349)TCC>TCT	p.S783S	BRD2_uc003ocq.3_Silent_p.S783S|BRD2_uc003ocp.3_Silent_p.S663S|BRD2_uc010juh.2_Silent_p.S818S	NM_005104	NP_005095	P25440	BRD2_HUMAN	bromodomain containing 2	783	Ser-rich.|ET.|Poly-Ser.				spermatogenesis	nucleus	protein serine/threonine kinase activity			central_nervous_system(3)|stomach(2)	5						GCTCAGATTCCAGCTCCTCCT	0.552													38	45					0	0	0.092188	0	0
GLP1R	2740	broad.mit.edu	37	6	39053786	39053786	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:39053786G>A	uc003ooj.3	+	13	1389	c.1329G>A	c.(1327-1329)CTG>CTA	p.L443L	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	443	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	CCAGCAGCCTGAGCAGTGGAG	0.637													70	73					0	0	0.048971	0	0
UBR2	23304	broad.mit.edu	37	6	42603282	42603282	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:42603282G>T	uc011dur.1	+	14	1672	c.1672G>T	c.(1672-1674)GAT>TAT	p.D558Y	UBR2_uc011dus.1_Missense_Mutation_p.D203Y|UBR2_uc010jxv.1_Missense_Mutation_p.D62Y|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	558					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			GTGTGCTTCAGATGTGAGTTT	0.423													62	60					4.79706e-38	4.87202e-38	0.048971	1	0
CUL7	9820	broad.mit.edu	37	6	43011351	43011351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:43011351G>A	uc003otq.2	-	17	3493	c.3190C>T	c.(3190-3192)CCC>TCC	p.P1064S	CUL7_uc010jyg.2_Missense_Mutation_p.P343S|CUL7_uc011dvb.1_Missense_Mutation_p.P1148S|CUL7_uc010jyh.2_Missense_Mutation_p.P57S|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	1064					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CAACCCAGGGGGCTAATGCCA	0.587													10	9					0	0	0.058154	0	0
TCTE1	202500	broad.mit.edu	37	6	44250035	44250035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:44250035G>A	uc003oxi.2	-	4	1264	c.1108C>T	c.(1108-1110)CGT>TGT	p.R370C	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	370	LRR 3.									ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CAGTTGAGACGTAGGTTGAGG	0.602													4	210					0	0	0.014758	0	0
BMP5	653	broad.mit.edu	37	6	55739504	55739504	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:55739504C>T	uc003pcq.2	-	1	872	c.160G>A	c.(160-162)GAA>AAA	p.E54K	BMP5_uc011dxf.1_Missense_Mutation_p.E54K	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	54					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			GAGAGAATTTCCCTTTGTATT	0.438													39	50					0	0	0.104719	0	0
ROS1	6098	broad.mit.edu	37	6	117630061	117630061	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:117630061T>A	uc003pxp.1	-	41	6664	c.6465A>T	c.(6463-6465)TTA>TTT	p.L2155F	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2155	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GACCAAGAGTTAAAATCTCCC	0.393			T	GOPC|ROS1	glioblastoma|NSCLC								17	23					0	0	0.038395	0	0
HIVEP2	3097	broad.mit.edu	37	6	143091612	143091612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:143091612G>A	uc003qjd.2	-	5	5007	c.4264C>T	c.(4264-4266)CCC>TCC	p.P1422S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1422					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		AAACACAAGGGGATGGAGGAT	0.547													27	42					0	0	0.108266	0	0
SHPRH	257218	broad.mit.edu	37	6	146271487	146271487	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:146271487C>A	uc003qlf.2	-	4	1294	c.895G>T	c.(895-897)GCA>TCA	p.A299S	SHPRH_uc003qld.2_Missense_Mutation_p.A299S|SHPRH_uc003qle.2_Missense_Mutation_p.A299S|SHPRH_uc003qlg.1_5'UTR|SHPRH_uc003qlj.1_Missense_Mutation_p.A188S|SHPRH_uc003qlk.1_Missense_Mutation_p.A299S	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	299					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		GGGATCAATGCAGGATGCTGG	0.463													53	72					1.14385e-22	1.15272e-22	0.048971	1	0
FNDC1	84624	broad.mit.edu	37	6	159653120	159653120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:159653120C>T	uc010kjv.2	+	11	1776	c.1576C>T	c.(1576-1578)CGC>TGC	p.R526C	FNDC1_uc010kjw.1_Missense_Mutation_p.R411C	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	526						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		ACCCCAGCTTCGCGCCAAGAA	0.562													20	11					0	0	0.055883	0	0
SMOC2	64094	broad.mit.edu	37	6	169053734	169053734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:169053734G>A	uc003qws.1	+	11	1131	c.1111G>A	c.(1111-1113)GAA>AAA	p.E371K	SMOC2_uc003qwr.1_Missense_Mutation_p.E382K|SMOC2_uc011egu.1_Missense_Mutation_p.E48K	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	371	EF-hand 1.|1 (Potential).				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		CGGCAAAAAGGAAATCAAACC	0.443													42	44					0	0	0.048971	0	0
PSMB1	5689	broad.mit.edu	37	6	170862327	170862327	+	Silent	SNP	A	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:170862327A>G	uc011ehe.1	-	1	91	c.4T>C	c.(4-6)TTG>CTG	p.L2L	PSMB1_uc003qxq.2_RNA|PSMB1_uc003qxr.2_5'Flank|TBP_uc003qxt.2_5'Flank|TBP_uc003qxu.2_5'Flank|TBP_uc011ehf.1_5'Flank	NM_002793	NP_002784	P20618	PSB1_HUMAN	proteasome beta 1 subunit precursor	2					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cell junction|cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.0563)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;7.5e-23)|BRCA - Breast invasive adenocarcinoma(81;4.88e-06)|GBM - Glioblastoma multiforme(31;0.00643)	Bortezomib(DB00188)	GTAGAGGACAACATCGCACGG	0.602													9	13					0	0	0.093190	0	0
FTSJ2	29960	broad.mit.edu	37	7	2274938	2274938	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:2274938G>T	uc003slm.2	-	3	589	c.560C>A	c.(559-561)CCT>CAT	p.P187H	MAD1L1_uc003slh.1_5'Flank|MAD1L1_uc003slf.1_5'Flank|MAD1L1_uc003slg.1_5'Flank|MAD1L1_uc010ksh.1_5'Flank|MAD1L1_uc003sli.1_5'Flank|MAD1L1_uc010ksi.1_5'Flank|MAD1L1_uc010ksj.2_5'Flank|FTSJ2_uc003slk.2_Missense_Mutation_p.P33H|FTSJ2_uc003sll.2_Missense_Mutation_p.P33H|FTSJ2_uc003sln.2_RNA|FTSJ2_uc003slo.2_Missense_Mutation_p.P33H	NM_013393	NP_037525	Q9UI43	RRMJ2_HUMAN	FtsJ homolog 2	187					cell proliferation	mitochondrion|nucleolus	nucleic acid binding|rRNA (uridine-2'-O-)-methyltransferase activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0822)|OV - Ovarian serous cystadenocarcinoma(56;2.7e-14)		TGTCCCCCCAGGTTGCAGGAT	0.547													29	54					1.88708e-17	1.89681e-17	0.037714	1	0
TNRC18	84629	broad.mit.edu	37	7	5391579	5391580	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:5391579_5391580CC>TT	uc003soi.3	-	17	5689_5690	c.5340_5341GG>AA	c.(5338-5343)AGGGGC>AGAAGC	p.G1781S	TNRC18_uc003soj.2_Missense_Mutation_p.G163S	NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	1781							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GCCGCCAGGCCCCTCTTGGTCA	0.649													14	16					0	0	0.004672	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146205	31146205	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:31146205T>G	uc003tca.1	+	16	1537	c.1314T>G	c.(1312-1314)AGT>AGG	p.S438R	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.S417R|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.S466R|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.S466R|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.S465R|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	438	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						TGGCCAGCAGTGGGGTGAATG	0.587													29	39					0	0	0.064281	0	0
HECW1	23072	broad.mit.edu	37	7	43547627	43547627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:43547627C>T	uc003tid.1	+	23	4368	c.3763C>T	c.(3763-3765)CGC>TGC	p.R1255C	HECW1_uc011kbi.1_Missense_Mutation_p.R1221C	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	1255					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GCTCATTATTCGCCGGGATCA	0.517													27	39					0	0	0.050027	0	0
NPC1L1	29881	broad.mit.edu	37	7	44561409	44561409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:44561409G>A	uc003tlb.2	-	12	2911	c.2855C>T	c.(2854-2856)TCC>TTC	p.S952F	NPC1L1_uc003tlc.2_Missense_Mutation_p.S952F|NPC1L1_uc011kbw.1_Missense_Mutation_p.S906F|NPC1L1_uc003tla.2_5'Flank	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	952	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	ATCCACCCAGGAGGAGGCAGG	0.607													28	34					0	0	0.054565	0	0
PCLO	27445	broad.mit.edu	37	7	82763921	82763921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:82763921G>A	uc003uhx.2	-	3	3234	c.2945C>T	c.(2944-2946)TCC>TTC	p.S982F	PCLO_uc003uhv.2_Missense_Mutation_p.S982F	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	928	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGACCTGTGGATTTGGGTGG	0.522													14	11					0	0	0.020292	0	0
GRM3	2913	broad.mit.edu	37	7	86394705	86394705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:86394705G>A	uc003uid.2	+	2	1343	c.244G>A	c.(244-246)GAT>AAT	p.D82N	GRM3_uc010lef.2_Missense_Mutation_p.D80N|GRM3_uc010leg.2_Intron|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	82	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AATCAACAAAGATGATTACTT	0.443													55	77					0	0	0.048971	0	0
TECPR1	25851	broad.mit.edu	37	7	97875247	97875247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:97875247G>A	uc003upg.2	-	3	417	c.212C>T	c.(211-213)GCC>GTC	p.A71V	TECPR1_uc003uph.1_Intron	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	71						integral to membrane	protein binding			pancreas(1)	1						ATTCTCATAGGCCTCCTCTCG	0.562													7	10					0	0	0.038147	0	0
ZKSCAN1	7586	broad.mit.edu	37	7	99621867	99621867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:99621867C>T	uc003usk.1	+	3	736	c.517C>T	c.(517-519)CAC>TAC	p.H173Y	ZKSCAN1_uc003usj.2_Missense_Mutation_p.H172Y|ZKSCAN1_uc003usl.1_Missense_Mutation_p.H137Y|ZKSCAN1_uc003usm.1_Intron	NM_003439	NP_003430	P17029	ZKSC1_HUMAN	zinc finger protein 36	173					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			TGACCTTCATCACGAGGCCAC	0.532													31	49					0	0	0.041601	0	0
ZAN	7455	broad.mit.edu	37	7	100336192	100336192	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:100336192G>A	uc003uwj.2	+	7	887	c.722G>A	c.(721-723)GGA>GAA	p.G241E	ZAN_uc003uwk.2_Missense_Mutation_p.G241E|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	241	MAM 2.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GGGTCATCAGGAAAGCCAGGC	0.557													11	16					0	0	0.093190	0	0
MUC17	140453	broad.mit.edu	37	7	100677132	100677132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:100677132C>T	uc003uxp.1	+	3	2488	c.2435C>T	c.(2434-2436)CCT>CTT	p.P812L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	812	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|11.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACAAGTATACCTGTCAGCATC	0.478													199	286					0	0	0.048971	0	0
RELN	5649	broad.mit.edu	37	7	103338452	103338452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:103338452C>T	uc003vca.2	-	10	1151	c.991G>A	c.(991-993)GAA>AAA	p.E331K	RELN_uc010liz.2_Missense_Mutation_p.E331K	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	331					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity	p.E331K(1)		ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CGAAGATTTTCCTGCTTCCAC	0.448													64	69					0	0	0.048971	0	0
CADPS2	93664	broad.mit.edu	37	7	122131379	122131379	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:122131379G>A	uc010lkp.2	-	10	1801	c.1638C>T	c.(1636-1638)ACC>ACT	p.T546T	CADPS2_uc003vkg.3_Silent_p.T246T|CADPS2_uc010lkq.2_Silent_p.T546T	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	546	PH.				exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						GGTGGGGATCGGTATAATCCA	0.368													6	7					0	0	0.029380	0	0
FLNC	2318	broad.mit.edu	37	7	128490101	128490101	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:128490101C>T	uc003vnz.3	+	31	5480	c.5271C>T	c.(5269-5271)CCC>CCT	p.P1757P	FLNC_uc003voa.3_Intron	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1757	Hinge 1.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						ACGCTCCTccccggcccggcg	0.468													2	2					0	0	0.004672	0	0
TRPV5	56302	broad.mit.edu	37	7	142625237	142625237	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:142625237G>A	uc003wby.1	-	7	1119	c.855C>T	c.(853-855)TCC>TCT	p.S285S	TRPV5_uc003wbz.2_Silent_p.S285S	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	285	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CCTCTCCCCAGGAGTCGATCT	0.542													36	53					0	0	0.069456	0	0
ATG9B	285973	broad.mit.edu	37	7	150715110	150715110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:150715110G>A	uc011kvc.1	-	8	1976	c.1900C>T	c.(1900-1902)CCG>TCG	p.P634S	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	634	Helical; (Potential).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGAGGAGCGGGGACAGGAGC	0.617											OREG0018444	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	6					0	0	0.014758	0	0
MLL3	58508	broad.mit.edu	37	7	151927082	151927082	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr7:151927082G>A	uc003wla.2	-	18	3121	c.2902C>T	c.(2902-2904)CAA>TAA	p.Q968*	MLL3_uc003wkz.2_Nonsense_Mutation_p.Q29*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	968	PHD-type 4.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		TCTGCTCCTTGGCCAAAACTG	0.348			N		medulloblastoma								37	401					0	0	0.048971	0	0
DLC1	10395	broad.mit.edu	37	8	12957624	12957624	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:12957624C>G	uc003wwm.2	-	9	2666	c.2222G>C	c.(2221-2223)AGC>ACC	p.S741T	DLC1_uc003wwk.1_Missense_Mutation_p.S304T|DLC1_uc003wwl.1_Missense_Mutation_p.S338T|DLC1_uc011kxx.1_Missense_Mutation_p.S230T	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	741	Poly-Ser.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GCTGCTGCTGCTGGTCTGCGT	0.627													3	54					0	0	0.014758	0	0
RP1	6101	broad.mit.edu	37	8	55537910	55537910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:55537910G>A	uc003xsd.1	+	4	1616	c.1468G>A	c.(1468-1470)GAA>AAA	p.E490K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	490					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGAAGAAAGGGAAAGTGGGGA	0.358													30	28					0	0	0.054565	0	0
TOX	9760	broad.mit.edu	37	8	59852045	59852045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:59852045G>A	uc003xtw.1	-	3	448	c.227C>T	c.(226-228)CCT>CTT	p.P76L		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	76						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				TGGGAGGGAAGGAGGAGTAAT	0.458													31	45					0	0	0.050027	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885791	88885791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:88885791G>A	uc003ydz.2	-	1	506	c.409C>T	c.(409-411)CAC>TAC	p.H137Y		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	137										ovary(1)	1						GAATCCAAGTGATTCAGTGAG	0.567													62	58					0	0	0.048971	0	0
KIAA1429	25962	broad.mit.edu	37	8	95541354	95541354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:95541354G>A	uc003ygo.1	-	7	837	c.824C>T	c.(823-825)CCT>CTT	p.P275L	KIAA1429_uc003ygp.2_Missense_Mutation_p.P275L|KIAA1429_uc010maz.1_5'Flank	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	275	Glu-rich.				mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			ttcctcctcAGGAATACTGTC	0.194													8	6					0	0	0.058154	0	0
VPS13B	157680	broad.mit.edu	37	8	100847495	100847495	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:100847495C>T	uc003yiv.2	+	53	9871	c.9760C>T	c.(9760-9762)CGA>TGA	p.R3254*	VPS13B_uc003yiw.2_Nonsense_Mutation_p.R3229*	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3254					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CCCTAGTCCTCGAGTAATTAT	0.343													14	26					0	0	0.024245	0	0
UBR5	51366	broad.mit.edu	37	8	103274276	103274276	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:103274276A>C	uc003ykr.1	-	55	7742	c.7709T>G	c.(7708-7710)TTT>TGT	p.F2570C	UBR5_uc003yks.1_Missense_Mutation_p.F2569C|UBR5_uc003ykq.2_Missense_Mutation_p.F81C	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	2570	HECT.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			AGGATCAAAAAAAGCAAAATC	0.343													17	30					0	0	0.028581	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367117	105367117	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:105367117C>T	uc003ylx.1	+	3	1091	c.1042C>T	c.(1042-1044)CAA>TAA	p.Q348*		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	348					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			ACAAGGAACTCAAGATATTAT	0.368													9	11					0	0	0.058154	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110401307	110401307	+	Splice_Site	SNP	G	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:110401307G>C	uc003yne.2	+	8	728	c.624_splice	c.e8-1	p.L208_splice		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor						immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTTTAATTAGATATGGTCTA	0.289										HNSCC(38;0.096)			21	25					0	0	0.076483	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457059	110457059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:110457059G>A	uc003yne.2	+	38	5065	c.4961G>A	c.(4960-4962)CGA>CAA	p.R1654Q		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1654	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTTGATAGGCGATTTGTACTT	0.433										HNSCC(38;0.096)			112	125					0	0	0.048971	0	0
COL14A1	7373	broad.mit.edu	37	8	121219325	121219325	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:121219325C>T	uc003yox.2	+	10	1448	c.1183C>T	c.(1183-1185)CCA>TCA	p.P395S	COL14A1_uc003yoy.2_Missense_Mutation_p.P73S|COL14A1_uc010mde.1_Missense_Mutation_p.P73S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	395	Fibronectin type-III 2.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GGGTGGAAAACCAGACGAGGT	0.373													11	14					0	0	0.080935	0	0
ASAP1	50807	broad.mit.edu	37	8	131104255	131104255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr8:131104255G>A	uc003yta.1	-	24	2564	c.2536C>T	c.(2536-2538)CCT>TCT	p.P846S	ASAP1_uc003ysz.1_Missense_Mutation_p.P657S|ASAP1_uc011liw.1_Missense_Mutation_p.P839S	NM_018482	NP_060952	Q9ULH1	ASAP1_HUMAN	development and differentiation enhancing factor	846	Pro-rich.				cilium morphogenesis|filopodium assembly|regulation of ARF GTPase activity|signal transduction	cytoplasm|membrane	ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding			ovary(4)	4						GGCCCATGAGGTAGTGGGCTG	0.617													72	105					0	0	0.048971	0	0
C9orf93	203238	broad.mit.edu	37	9	15920413	15920413	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:15920413T>C	uc003zmd.2	+	25	4061	c.3746T>C	c.(3745-3747)TTA>TCA	p.L1249S	C9orf93_uc003zme.2_Missense_Mutation_p.L1164S|C9orf93_uc011lmu.1_Missense_Mutation_p.L1257S	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	1249											0				GBM - Glioblastoma multiforme(50;4.84e-07)		AATGCAAGTTTACAATCAGTA	0.313													19	1					0	0	0.069288	0	0
NOL6	65083	broad.mit.edu	37	9	33465234	33465234	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:33465234G>A	uc003zsz.2	-	20	2753	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_5'Flank|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Silent_p.F881F|NOL6_uc011lob.1_Silent_p.F832F|NOL6_uc003ztb.1_Silent_p.F884F	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	884					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		CAGGGTGCAGGAAAAGGGCAG	0.617													5	0					0	0	0.029380	0	0
ANKRD19	138649	broad.mit.edu	37	9	95646227	95646227	+	RNA	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:95646227C>T	uc004asr.3	+	9		c.1920C>T								Homo sapiens cDNA FLJ36178 fis, clone TESTI2026534.												0						CTCCCAGTGTCCAGTAGGGCA	0.567													40	2					0	0	0.048971	0	0
IKBKAP	8518	broad.mit.edu	37	9	111668626	111668626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:111668626C>T	uc004bdm.3	-	14	2120	c.1600G>A	c.(1600-1602)GCT>ACT	p.A534T	IKBKAP_uc004bdl.2_Missense_Mutation_p.A185T|IKBKAP_uc011lwc.1_Missense_Mutation_p.A420T|IKBKAP_uc010mtq.2_Missense_Mutation_p.A185T	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	534					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						TCAGAAGAAGCTGCAGTCAAA	0.468													56	67					0	0	0.048971	0	0
SVEP1	79987	broad.mit.edu	37	9	113169455	113169455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:113169455C>T	uc010mtz.2	-	38	8762	c.8425G>A	c.(8425-8427)GGC>AGC	p.G2809S	SVEP1_uc010mty.2_Missense_Mutation_p.G735S	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2809	Sushi 23.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						CTCTCAGTGCCATTCAGCACA	0.488													90	100					0	0	0.048971	0	0
C5	727	broad.mit.edu	37	9	123751988	123751988	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:123751988G>A	uc004bkv.2	-	24	3042	c.3012C>T	c.(3010-3012)CCC>CCT	p.P1004P		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1004					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	CACTCCCTTTGGGGAGGTGGG	0.438													31	76					0	0	0.054565	0	0
OR1L8	138881	broad.mit.edu	37	9	125330095	125330095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:125330095C>T	uc004bmp.1	-	1	662	c.662G>A	c.(661-663)CGA>CAA	p.R221Q		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						AGTGAGGATTCGTATATAAGA	0.428													9	22					0	0	0.058154	0	0
OR1L6	392390	broad.mit.edu	37	9	125513035	125513035	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:125513035G>A	uc011lzc.1	+	1	1017	c.1017G>A	c.(1015-1017)AAG>AAA	p.K339K		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	339	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGGTTTGAAGAAATTACAGG	0.403													37	28					0	0	0.098360	0	0
CRB2	286204	broad.mit.edu	37	9	126128626	126128626	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:126128626C>T	uc004bnx.1	+	4	827	c.735C>T	c.(733-735)TTC>TTT	p.F245F	CRB2_uc004bnw.1_Silent_p.F245F	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	245	Extracellular (Potential).|EGF-like 5.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						TCGGGAGCTTCCGCTGCCTCT	0.736													10	18					0	0	0.080935	0	0
PPP6C	5537	broad.mit.edu	37	9	127911958	127911958	+	Silent	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:127911958G>A	uc004bpg.3	-	7	1133	c.912C>T	c.(910-912)TTC>TTT	p.F304F	PPP6C_uc010mwv.2_Silent_p.F341F|PPP6C_uc010mww.2_Silent_p.F282F|PPP6C_uc011lzr.1_Silent_p.F157F	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	304					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						GGCCTCAAAGGAAATATGGCG	0.418													35	82					0	0	0.104719	0	0
LRSAM1	90678	broad.mit.edu	37	9	130230109	130230109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:130230109G>A	uc004brb.1	+	10	964	c.619G>A	c.(619-621)GAG>AAG	p.E207K	LRSAM1_uc010mxk.1_Missense_Mutation_p.E207K|LRSAM1_uc004brc.1_Missense_Mutation_p.E207K|LRSAM1_uc004brd.1_Missense_Mutation_p.E207K	NM_001005373	NP_001005373	Q6UWE0	LRSM1_HUMAN	leucine rich repeat and sterile alpha motif	207					negative regulation of endocytosis|non-lytic virus budding|protein autoubiquitination|protein catabolic process|protein polyubiquitination|protein transport|ubiquitin-dependent endocytosis	cytoplasm|extracellular region|membrane part	hormone activity|ubiquitin-protein ligase activity|zinc ion binding				0						CCTCTGCAAAGGTAAAGCCAG	0.478													5	12					0	0	0.021553	0	0
USP20	10868	broad.mit.edu	37	9	132618591	132618591	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:132618591C>T	uc004bys.2	+	4	298	c.87C>T	c.(85-87)ACC>ACT	p.T29T	USP20_uc004byr.2_Silent_p.T29T|USP20_uc004byt.1_Silent_p.T29T	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	29	UBP-type.				endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				CACAGGGAACCTGTCAGTCGT	0.592													93	7					0	0	0.048971	0	0
POMT1	10585	broad.mit.edu	37	9	134379613	134379613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:134379613G>A	uc004cav.2	+	2	210	c.8G>A	c.(7-9)GGA>GAA	p.G3E	POMT1_uc011mci.1_Missense_Mutation_p.G3E|POMT1_uc004cax.2_Missense_Mutation_p.G3E|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Missense_Mutation_p.G3E|POMT1_uc004caw.2_Intron|POMT1_uc011mck.1_Intron|POMT1_uc011mcl.1_Intron|POMT1_uc011mcm.1_Missense_Mutation_p.G3E	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	3					multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		AAGATGTGGGGATTTTTGAAG	0.582											OREG0019563	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	59	3					0	0	0.048971	0	0
POMT1	10585	broad.mit.edu	37	9	134384356	134384356	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:134384356C>A	uc004cav.2	+	6	688	c.486C>A	c.(484-486)TTC>TTA	p.F162L	POMT1_uc011mci.1_Intron|POMT1_uc004cax.2_Missense_Mutation_p.F162L|POMT1_uc011mcj.1_Intron|POMT1_uc004cau.2_Missense_Mutation_p.F162L|POMT1_uc004caw.2_Missense_Mutation_p.F108L|POMT1_uc011mck.1_Missense_Mutation_p.F45L|POMT1_uc011mcl.1_Missense_Mutation_p.F10L|POMT1_uc011mcm.1_Missense_Mutation_p.F132L|POMT1_uc011mcn.1_5'Flank	NM_007171	NP_009102	Q9Y6A1	POMT1_HUMAN	protein-O-mannosyltransferase 1 isoform a	162	Helical; (Potential).				multicellular organismal development|protein O-linked glycosylation	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-mannose-protein mannosyltransferase activity|metal ion binding			upper_aerodigestive_tract(1)	1		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.65e-05)|Epithelial(140;0.000259)		TAATATTTTTCAATCTATTGG	0.393													33	3					2.1956e-27	2.21835e-27	0.069456	1	0
SEC16A	9919	broad.mit.edu	37	9	139368510	139368510	+	Silent	SNP	G	C	C			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:139368510G>C	uc004chx.2	-	3	3867	c.3558C>G	c.(3556-3558)CTC>CTG	p.L1186L	SEC16A_uc004chv.3_Silent_p.L576L|SEC16A_uc004chw.2_Silent_p.L1186L|SEC16A_uc010nbn.2_Silent_p.L1186L|SEC16A_uc010nbo.1_Silent_p.L1186L	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	1008	Required for endoplasmic reticulum localization.				protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		CCTGGTAATAGAGGGAGGCTG	0.522													30	2					0	0	0.059317	0	0
C9orf142	286257	broad.mit.edu	37	9	139887846	139887846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr9:139887846C>T	uc004cki.2	+	5	499	c.473C>T	c.(472-474)CCT>CTT	p.P158L		NM_183241	NP_899064	Q9BUH6	CI142_HUMAN	hypothetical protein LOC286257	158											0	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0821)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CCTGCAGGGCCTCAGCTCTTC	0.602													5	1					0	0	0.029380	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911365	100911365	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chrX:100911365G>A	uc004eid.2	-	3	1565	c.1210C>T	c.(1210-1212)CAA>TAA	p.Q404*	ARMCX2_uc004eie.3_Nonsense_Mutation_p.Q404*|ARMCX2_uc004eif.3_Nonsense_Mutation_p.Q404*|ARMCX2_uc004eig.3_Nonsense_Mutation_p.Q404*|ARMCX2_uc010nnt.2_Nonsense_Mutation_p.Q404*	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	404	ARM 1.					integral to membrane	binding			ovary(6)	6						GCTACCTGTTGGATGAAAGGA	0.453													42	3					0	0	0.048971	0	0
PHF6	84295	broad.mit.edu	37	X	133551267	133551267	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chrX:133551267C>T	uc004exj.2	+	9	1105	c.903C>T	c.(901-903)TAC>TAT	p.Y301Y	PHF6_uc004exk.2_Silent_p.Y301Y|PHF6_uc011mvk.1_Silent_p.Y267Y|PHF6_uc004exi.2_Silent_p.Y302Y	NM_001015877	NP_001015877	Q8IWS0	PHF6_HUMAN	PHD finger protein 6 isoform 1	301	PHD-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TTAAGACTTACCATTACCACT	0.358													32	0					0	0	0.054565	0	0
MAGEA4	4103	broad.mit.edu	37	X	151092728	151092728	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chrX:151092728C>T	uc004fez.2	+	3	748	c.592C>T	c.(592-594)CCC>TCC	p.P198S	MAGEA4_uc004ffa.2_Missense_Mutation_p.P198S|MAGEA4_uc004ffb.2_Missense_Mutation_p.P198S|MAGEA4_uc004ffc.2_Missense_Mutation_p.P198S|MAGEA4_uc004ffd.2_Missense_Mutation_p.P198S	NM_002362	NP_002353	P43358	MAGA4_HUMAN	melanoma antigen family A, 4	198	MAGE.						protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGATCTTTCCCAAGACAGG	0.557													72	1					0	0	0.048971	0	0
GABRA3	2556	broad.mit.edu	37	X	151453191	151453191	+	Silent	SNP	C	T	T			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chrX:151453191C>T	uc010ntk.1	-	4	519	c.279G>A	c.(277-279)GTG>GTA	p.V93V		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	93	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTCAGTCTTCACTTCAGTCA	0.438													32	3					0	0	0.064281	0	0
EMG1	10436	broad.mit.edu	37	12	7080212	7080213	+	Splice_Site	INS	-	C	C	rs17857448		TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr12:7080212_7080213insC	uc001qsh.3	+	2	272	c.129_splice	c.e2+1	p.L43_splice	PHB2_uc001qsd.2_5'Flank|PHB2_uc010sft.1_5'Flank|PHB2_uc010sfu.1_5'Flank|EMG1_uc009zfo.2_RNA|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1						ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						GAGGCCGTAGTTTATTGTGGTG	0.569													7	17	---	---	---	---					
LRIG1	26018	broad.mit.edu	37	3	66436625	66436627	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr3:66436625_66436627delGCT	uc003dmx.2	-	13	1581_1583	c.1567_1569delAGC	c.(1567-1569)AGCdel	p.S524del	SLC25A26_uc011bft.1_RNA|LRIG1_uc011bfu.1_In_Frame_Del_p.S144del|LRIG1_uc003dmw.2_In_Frame_Del_p.S190del|LRIG1_uc010hnz.2_In_Frame_Del_p.S240del|LRIG1_uc010hoa.2_In_Frame_Del_p.S548del	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	524	Extracellular (Potential).|Ig-like C2-type 1.|Poly-Ser.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TCATGGGGGAGCTGCTGCTGCTG	0.547													8	526	---	---	---	---					
SRF	6722	broad.mit.edu	37	6	43139485	43139487	+	In_Frame_Del	DEL	GGC	-	-			TCGA-EE-A3J8-06A-11D-A20D-08	TCGA-EE-A3J8-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	aec50919-7be5-4848-8a88-5055bff72f86	0c498759-5af7-4f87-b6bc-0443be965aed	g.chr6:43139485_43139487delGGC	uc003oui.2	+	1	566_568	c.91_93delGGC	c.(91-93)GGCdel	p.G35del	SRF_uc011dvf.1_5'Flank	NM_003131	NP_003122	P11831	SRF_HUMAN	serum response factor (c-fos serum response	35	Gly-rich.				angiogenesis involved in wound healing|cell migration involved in sprouting angiogenesis|cellular senescence|heart looping|muscle cell homeostasis|neuron development|positive regulation of cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription via serum response element binding|regulation of smooth muscle cell differentiation|response to cytokine stimulus|response to hormone stimulus|response to toxin|transcription from RNA polymerase II promoter|trophectodermal cell differentiation	endoplasmic reticulum	protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|serum response element binding|transcription factor binding			ovary(1)|breast(1)|central_nervous_system(1)	3			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.011)|OV - Ovarian serous cystadenocarcinoma(102;0.0423)			ggggcggccgggcggcggcggcg	0.690													2	4	---	---	---	---					
