Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AURKAIP1	54998	broad.mit.edu	37	1	1309541	1309541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:1309541C>T	uc001afb.1	-	2	447	c.337G>A	c.(337-339)GAG>AAG	p.E113K	AURKAIP1_uc001afc.2_Missense_Mutation_p.E113K|AURKAIP1_uc001afd.2_Missense_Mutation_p.E113K|AURKAIP1_uc009vkb.1_Missense_Mutation_p.E113K	NM_017900	NP_060370	Q9NWT8	AKIP_HUMAN	aurora kinase A interacting protein 1	113					negative regulation of mitosis|positive regulation of proteolysis	mitochondrion|nucleus	protein binding				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;5.82e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TCCCCCTGCTCGGCCCCTTCC	0.627													15	114					0	0	0.004990	0	0
SLC25A33	84275	broad.mit.edu	37	1	9640068	9640069	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:9640068_9640069CC>GT	uc001apw.2	+	6	762_763	c.539_540CC>GT	c.(538-540)ACC>AGT	p.T180S	SLC25A33_uc001apx.2_Missense_Mutation_p.T113S	NM_032315	NP_115691	Q9BSK2	S2533_HUMAN	mitochondrial carrier protein MGC4399	180	Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0	all_lung(157;0.246)	all_epithelial(116;1.16e-18)|all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Breast(348;0.00191)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.44e-05)|Kidney(185;0.000262)|KIRC - Kidney renal clear cell carcinoma(229;0.000957)|BRCA - Breast invasive adenocarcinoma(304;0.0019)|STAD - Stomach adenocarcinoma(132;0.00355)|READ - Rectum adenocarcinoma(331;0.0419)		GTTTACCAGACCGAAGGCATTC	0.416													6	33					0	0	0.004672	0	0
PTCHD2	57540	broad.mit.edu	37	1	11577549	11577549	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:11577549C>T	uc001ash.3	+	7	1917	c.1779C>T	c.(1777-1779)TTC>TTT	p.F593F	PTCHD2_uc001asi.1_Silent_p.F593F	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	593	Helical; (Potential).|SSD.				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		TTGGCCTGTTCATGTCTCTCA	0.617													15	130					0	0	0.006122	0	0
LOC440563	440563	broad.mit.edu	37	1	13183461	13183461	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:13183461G>A	uc010obg.1	-	1	507	c.412C>T	c.(412-414)CTG>TTG	p.L138L		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	138						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						ACTACAGCCAGAGCAATGGGA	0.502													12	265					0	0	0.013537	0	0
PRDM2	7799	broad.mit.edu	37	1	14106220	14106220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:14106220C>T	uc001avi.2	+	8	2786	c.1930C>T	c.(1930-1932)CCA>TCA	p.P644S	PRDM2_uc001avg.2_Intron|PRDM2_uc001avh.2_Missense_Mutation_p.P644S|PRDM2_uc001avj.2_Intron|PRDM2_uc009vod.1_Missense_Mutation_p.P401S|PRDM2_uc001avk.2_Missense_Mutation_p.P443S|PRDM2_uc009voe.2_Intron|PRDM2_uc009vof.2_Intron	NM_012231	NP_036363	Q13029	PRDM2_HUMAN	retinoblastoma protein-binding zinc finger	644						Golgi apparatus|nucleus	DNA binding|histone-lysine N-methyltransferase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Ovarian(185;0.249)	all_lung(284;2.56e-05)|Lung NSC(185;4.94e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00224)|Colorectal(212;3.23e-08)|BRCA - Breast invasive adenocarcinoma(304;2.16e-05)|COAD - Colon adenocarcinoma(227;2.53e-05)|Kidney(185;0.000762)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00446)|READ - Rectum adenocarcinoma(331;0.0276)|Lung(427;0.145)		AACTGCGAGCCCACCTGCACT	0.483													7	25					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	1	21753556	21753556	+	RNA	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:21753556C>T	uc001bep.1	-	2		c.35G>A								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		CTTCTTGGTCCTTTTTAATTC	0.468													4	81					0	0	0.000602	0	0
NBPF3	84224	broad.mit.edu	37	1	21807433	21807433	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:21807433G>A	uc001ber.2	+	12	1742	c.1392G>A	c.(1390-1392)AAG>AAA	p.K464K	NBPF3_uc001bes.2_Silent_p.K408K|NBPF3_uc009vqb.2_Silent_p.K452K|NBPF3_uc010odm.1_Silent_p.K394K	NM_032264	NP_115640	Q9H094	NBPF3_HUMAN	neuroblastoma breakpoint family, member 3	464	NBPF 4.					cytoplasm				upper_aerodigestive_tract(1)|ovary(1)	2		all_lung(284;2.16e-05)|Lung NSC(340;2.19e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|OV - Ovarian serous cystadenocarcinoma(117;7.53e-27)|COAD - Colon adenocarcinoma(152;1.18e-05)|GBM - Glioblastoma multiforme(114;3.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000143)|STAD - Stomach adenocarcinoma(196;0.00306)|KIRC - Kidney renal clear cell carcinoma(1967;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		GAATGAAAAAGGACCAAGAAG	0.473													11	189					0	0	0.003163	0	0
MYOM3	127294	broad.mit.edu	37	1	24413146	24413146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:24413146G>A	uc001bin.3	-	15	1949	c.1786C>T	c.(1786-1788)CGG>TGG	p.R596W	MYOM3_uc001bim.3_Missense_Mutation_p.R253W|MYOM3_uc001bio.2_Missense_Mutation_p.R596W|MYOM3_uc001bip.1_Missense_Mutation_p.R253W	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	596										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGCGGGCCCCGCAAGGCGATG	0.632													3	49					0	0	0.009096	0	0
PTAFR	5724	broad.mit.edu	37	1	28476798	28476798	+	Silent	SNP	G	A	A	rs144798109	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:28476798G>A	uc001bpl.2	-	2	862	c.735C>T	c.(733-735)TTC>TTT	p.F245F	PTAFR_uc001bpm.3_Silent_p.F245F|PTAFR_uc009vte.2_Silent_p.F245F	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	245	Helical; Name=6; (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGGGGCACGAAGCAGATGA	0.612													11	39					0	0	0.013537	0	0
CSMD2	114784	broad.mit.edu	37	1	34102012	34102012	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:34102012G>A	uc001bxn.1	-	30	4826	c.4797C>T	c.(4795-4797)ATC>ATT	p.I1599I	CSMD2_uc001bxm.1_Silent_p.I1639I|CSMD2_uc001bxo.1_Silent_p.I512I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1599	Extracellular (Potential).|Sushi 9.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGGCCCCAGGATGCAGCTCA	0.652													5	24					0	0	0.000602	0	0
CSMD2	114784	broad.mit.edu	37	1	34401498	34401498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:34401498C>T	uc001bxn.1	-	4	484	c.455G>A	c.(454-456)GGT>GAT	p.G152D	CSMD2_uc001bxm.1_Missense_Mutation_p.G192D	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	152	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GAAGGTTGAACCCTGCTGGAT	0.602													20	103					0	0	0.012319	0	0
MACF1	23499	broad.mit.edu	37	1	39800890	39800890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:39800890C>T	uc010oiu.1	+	1	4081	c.3950C>T	c.(3949-3951)TCC>TTC	p.S1317F	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	2882					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AAAGGTAAATCCTTGGGCCAA	0.353													15	81					0	0	0.006122	0	0
PTPRF	5792	broad.mit.edu	37	1	44070930	44070931	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:44070930_44070931CC>GT	uc001cjr.2	+	18	3545_3546	c.3205_3206CC>GT	c.(3205-3207)CCC>GTC	p.P1069V	PTPRF_uc001cjs.2_Missense_Mutation_p.P1060V|PTPRF_uc001cju.2_Missense_Mutation_p.P447V|PTPRF_uc009vwt.2_Missense_Mutation_p.P629V|PTPRF_uc001cjv.2_Missense_Mutation_p.P529V|PTPRF_uc001cjw.2_Missense_Mutation_p.P295V	NM_002840	NP_002831	P10586	PTPRF_HUMAN	protein tyrosine phosphatase, receptor type, F	1069	Extracellular (Potential).|Fibronectin type-III 8.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|skin(3)|lung(1)|kidney(1)|central_nervous_system(1)	10	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				AGACCTGCAGCCCAACACAGAG	0.624													14	104					0	0	0.004672	0	0
KDM4A	9682	broad.mit.edu	37	1	44134854	44134855	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:44134854_44134855CC>TT	uc001cjx.2	+	10	1413_1414	c.1247_1248CC>TT	c.(1246-1248)CCC>CTT	p.P416L	KDM4A_uc010oki.1_Missense_Mutation_p.P416L	NM_014663	NP_055478	O75164	KDM4A_HUMAN	jumonji domain containing 2A	416					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|nucleolus	histone demethylase activity (H3-K36 specific)|nucleic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			skin(1)	1						GAGCTCTTCCCCAAGGAGGATC	0.579													15	126					0	0	0.004672	0	0
HECTD3	79654	broad.mit.edu	37	1	45475072	45475073	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:45475072_45475073GG>TA	uc009vxk.2	-	6	1055_1056	c.957_958CC>TA	c.(955-960)AACCTG>AATATG	p.L320M	HECTD3_uc001cmy.3_5'Flank|HECTD3_uc010olh.1_Missense_Mutation_p.L36M|UROD_uc010oli.1_5'Flank|UROD_uc001cna.1_5'Flank|UROD_uc001cnb.1_5'Flank	NM_024602	NP_078878	Q5T447	HECD3_HUMAN	HECT domain containing 3	320	DOC.				proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	ubiquitin-protein ligase activity				0	Acute lymphoblastic leukemia(166;0.155)					AGCTTCTTCAGGTTGTCCCCTT	0.54													35	248					0	0	0.004672	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47571882	47571882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:47571882C>T	uc001cqu.1	+	9	1153	c.1150C>T	c.(1150-1152)CGG>TGG	p.R384W		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	384	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						AAACATATCCCGGTTACTCGA	0.478													16	90					0	0	0.008871	0	0
INADL	10207	broad.mit.edu	37	1	62330219	62330219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:62330219G>A	uc001dab.2	+	20	2863	c.2749G>A	c.(2749-2751)GAA>AAA	p.E917K	INADL_uc009waf.1_Missense_Mutation_p.E917K|INADL_uc001daa.2_Missense_Mutation_p.E917K|INADL_uc001dad.3_Missense_Mutation_p.E614K|INADL_uc001dac.2_RNA	NM_176877	NP_795352	Q8NI35	INADL_HUMAN	InaD-like	917					intracellular signal transduction|tight junction assembly	apical plasma membrane|perinuclear region of cytoplasm|tight junction	protein binding			ovary(3)|skin(1)	4						GCATGATAATGAACCATCCGA	0.488													14	122					0	0	0.006122	0	0
CACHD1	57685	broad.mit.edu	37	1	65142646	65142646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:65142646C>T	uc001dbo.1	+	22	2996	c.2891C>T	c.(2890-2892)GCT>GTT	p.A964V	CACHD1_uc001dbp.1_Missense_Mutation_p.A719V|CACHD1_uc001dbq.1_Missense_Mutation_p.A719V|CACHD1_uc010opa.1_Missense_Mutation_p.A208V	NM_020925	NP_065976	Q5VU97	CAHD1_HUMAN	cache domain containing 1	1015	Extracellular (Potential).				calcium ion transport	integral to membrane				ovary(2)	2						CTGCAAGATGCTCTTCACCAG	0.493													16	86					0	0	0.006122	0	0
LEPR	3953	broad.mit.edu	37	1	66075721	66075721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:66075721G>A	uc001dci.2	+	13	2046	c.1844G>A	c.(1843-1845)AGG>AAG	p.R615K	LEPR_uc001dcg.2_Missense_Mutation_p.R615K|LEPR_uc001dch.2_Missense_Mutation_p.R615K|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.R615K|LEPR_uc001dck.2_Missense_Mutation_p.R615K	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	615	Extracellular (Potential).|Fibronectin type-III 2.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CGCTGTAAGAGGCTAGATGGA	0.403													18	177					0	0	0.007413	0	0
C1orf173	127254	broad.mit.edu	37	1	75107096	75107096	+	Silent	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:75107096A>G	uc001dgg.2	-	5	582	c.363T>C	c.(361-363)TCT>TCC	p.S121S		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	121										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTGGGTGGGGAGACAGGATTG	0.418													4	94					0	0	0.009096	0	0
AMY2B	280	broad.mit.edu	37	1	104117928	104117928	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:104117928G>A	uc001duq.2	+	8	1578	c.962G>A	c.(961-963)GGG>GAG	p.G321E	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.G321E|AMY2B_uc001dus.1_5'Flank	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	321					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		CGAGGACATGGGGCTGGAGGA	0.398													28	505					0	0	0.003271	0	0
GNAI3	2773	broad.mit.edu	37	1	110125063	110125063	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:110125063C>T	uc001dxz.2	+	5	623	c.466C>T	c.(466-468)CTA>TTA	p.L156L		NM_006496	NP_006487	P08754	GNAI3_HUMAN	guanine nucleotide binding protein (G protein),	156					cell cycle|cell division|inhibition of adenylate cyclase activity by G-protein signaling pathway|platelet activation|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			ovary(1)	1		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.046)|Colorectal(144;0.119)|Epithelial(280;0.139)|all cancers(265;0.147)|LUSC - Lung squamous cell carcinoma(189;0.237)		ATTTAGTTATCTAAATGATCT	0.358													10	75					0	0	0.006214	0	0
RHOC	389	broad.mit.edu	37	1	113246331	113246331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:113246331G>A	uc001ecp.1	-	3	391	c.91C>T	c.(91-93)CCG>TCG	p.P31S	RHOC_uc001ecq.1_Missense_Mutation_p.P31S|RHOC_uc001ecr.1_Missense_Mutation_p.P31S|RHOC_uc009wgk.1_Missense_Mutation_p.P31S	NM_001042679	NP_001036144	P08134	RHOC_HUMAN	ras homolog gene family, member C precursor	31					axon guidance|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|signal transducer activity			ovary(1)	1	Lung SC(450;0.246)	all_cancers(81;1.44e-07)|all_epithelial(167;7.64e-07)|all_lung(203;2.16e-05)|Lung NSC(69;3.86e-05)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TAGACCTCCGGAAACTGATCC	0.557													5	26					0	0	0.000602	0	0
RSBN1	54665	broad.mit.edu	37	1	114340452	114340452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:114340452G>A	uc001edq.2	-	2	946	c.910C>T	c.(910-912)CTT>TTT	p.L304F	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	304						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCTTATTAAGTCCTGAAGTG	0.423													17	106					0	0	0.004990	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114454684	114454684	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:114454684C>T	uc001eeg.2	+	4	1641	c.1470C>T	c.(1468-1470)ACC>ACT	p.T490T	DCLRE1B_uc001eeh.2_Intron|DCLRE1B_uc001eei.2_Silent_p.T364T	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	490					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCAAGGGCACCCCTCTTCTAG	0.527								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					11	111					0	0	0.010729	0	0
FAM46C	54855	broad.mit.edu	37	1	118166042	118166042	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:118166042C>T	uc001ehe.2	+	2	751	c.552C>T	c.(550-552)TTC>TTT	p.F184F		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	184											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		TGGACTCTTTCCAAATCATCC	0.502										Multiple Myeloma(3;1.13e-06)			15	129					0	0	0.004007	0	0
HMGCS2	3158	broad.mit.edu	37	1	120306986	120306986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:120306986G>A	uc001eid.2	-	2	419	c.368C>T	c.(367-369)TCT>TTT	p.S123F	HMGCS2_uc010oxj.1_Missense_Mutation_p.S123F|HMGCS2_uc001eie.2_Missense_Mutation_p.S31F	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	123					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		CCTGCCCACAGAGTCCCATGG	0.537													14	103					0	0	0.004990	0	0
LENEP	55891	broad.mit.edu	37	1	154966129	154966129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:154966129C>T	uc001fgi.2	+	1	68	c.46C>T	c.(46-48)CTC>TTC	p.L16F		NM_018655	NP_061125	Q9Y5L5	LENEP_HUMAN	lens epithelial protein	16					multicellular organismal development		DNA binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			ACCCTTCTTCCTCGGAGGGGC	0.612													9	84					0	0	0.008291	0	0
DCST1	149095	broad.mit.edu	37	1	155007182	155007182	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:155007182A>G	uc001fgn.1	+	4	337	c.241A>G	c.(241-243)ATG>GTG	p.M81V	DCST2_uc001fgm.2_5'Flank|DCST2_uc009wpb.2_5'Flank|DCST1_uc010per.1_Missense_Mutation_p.M106V|DCST1_uc010pes.1_Intron	NM_152494	NP_689707	Q5T197	DCST1_HUMAN	DC-STAMP domain containing 1 isoform 1	81	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(1)|skin(1)	2	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			ACAGAAGATTATGTTCTTGTA	0.537													10	84					0	0	0.002450	0	0
CD1E	913	broad.mit.edu	37	1	158326598	158326598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:158326598C>T	uc001fse.2	+	6	1318	c.1079C>T	c.(1078-1080)TCA>TTA	p.S360L	CD1E_uc001fsd.2_3'UTR|CD1E_uc001fsk.2_Missense_Mutation_p.S270L|CD1E_uc001fsj.2_Missense_Mutation_p.S203L|CD1E_uc001fsc.2_Missense_Mutation_p.S171L|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Missense_Mutation_p.S116L|CD1E_uc001fsf.2_Missense_Mutation_p.S348L|CD1E_uc001fry.2_Missense_Mutation_p.S293L|CD1E_uc001fsg.2_3'UTR|CD1E_uc001fsh.2_Missense_Mutation_p.S159L|CD1E_uc001fsi.2_3'UTR|CD1E_uc009wsv.2_Missense_Mutation_p.S261L|CD1E_uc001frz.2_Missense_Mutation_p.S258L|CD1E_uc009wsw.2_Nonsense_Mutation_p.Q75*	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	360					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					ACCAAGAATTCAAGACATCAG	0.448													14	103					0	0	0.003163	0	0
POU2F1	5451	broad.mit.edu	37	1	167343473	167343473	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:167343473C>T	uc001gec.2	+	7	624	c.462C>T	c.(460-462)TCC>TCT	p.S154S	POU2F1_uc010plg.1_RNA|POU2F1_uc001ged.2_Silent_p.S152S|POU2F1_uc001gee.2_Silent_p.S154S|POU2F1_uc010plh.1_Intron|POU2F1_uc001gef.2_Silent_p.S166S|POU2F1_uc001geg.2_Silent_p.S52S	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	154					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						CCACCATCTCCGCCTCTGCTG	0.622													4	22					0	0	0.001168	0	0
PAPPA2	60676	broad.mit.edu	37	1	176734924	176734924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:176734924G>A	uc001gkz.2	+	15	5438	c.4274G>A	c.(4273-4275)AGG>AAG	p.R1425K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1425	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ACTTGTCAAAGGGGATTTGCC	0.522													12	88					0	0	0.001855	0	0
HMCN1	83872	broad.mit.edu	37	1	185964144	185964144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:185964144G>A	uc001grq.1	+	24	3932	c.3703G>A	c.(3703-3705)GAT>AAT	p.D1235N		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1235	Ig-like C2-type 9.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CACGCCCTCAGATGCTGGCAT	0.453													15	102					0	0	0.004007	0	0
PRG4	10216	broad.mit.edu	37	1	186277995	186277995	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:186277995G>A	uc001gru.3	+	7	3195	c.3144G>A	c.(3142-3144)ACG>ACA	p.T1048T	PRG4_uc001grt.3_Silent_p.T1007T|PRG4_uc009wyl.2_Silent_p.T955T|PRG4_uc009wym.2_Silent_p.T914T|PRG4_uc010poo.1_RNA	NM_005807	NP_005798	Q92954	PRG4_HUMAN	proteoglycan 4 isoform A	1048					cell proliferation|immune response	extracellular region	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						AACCAAAGACGACACCAACTC	0.453													15	71					0	0	0.003163	0	0
F13B	2165	broad.mit.edu	37	1	197019883	197019883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:197019883C>T	uc001gtt.1	-	10	1726	c.1682G>A	c.(1681-1683)GGA>GAA	p.G561E		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	561	Sushi 9.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CTCCCTAGATCCTTCTAGGAA	0.353													8	42					0	0	0.006214	0	0
PTPRC	5788	broad.mit.edu	37	1	198691544	198691545	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:198691544_198691545GG>AA	uc001gur.1	+	15	1834	c.1654_splice	c.e15-1	p.A552_splice	PTPRC_uc001gus.1_Splice_Site_p.A504_splice|PTPRC_uc001gut.1_Splice_Site_p.A391_splice|PTPRC_uc009wzf.1_Splice_Site_p.A440_splice|PTPRC_uc010ppg.1_Splice_Site_p.A488_splice	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C						axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						CTGAAATTCAGGCCTATTTTCA	0.223													13	126					0	0	0.004672	0	0
DSTYK	25778	broad.mit.edu	37	1	205130488	205130488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:205130488C>T	uc001hbw.2	-	7	1910	c.1846G>A	c.(1846-1848)GAG>AAG	p.E616K	DSTYK_uc001hbx.2_Missense_Mutation_p.E616K|DSTYK_uc001hby.1_Missense_Mutation_p.E77K	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	616						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						TCCGTTTTCTCTAACCGGCCT	0.398													7	60					0	0	0.003080	0	0
TMCC2	9911	broad.mit.edu	37	1	205238204	205238205	+	Missense_Mutation	DNP	CT	AG	AG			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:205238204_205238205CT>AG	uc001hbz.1	+	4	1318_1319	c.874_875CT>AG	c.(874-876)CTG>AGG	p.L292R	TMCC2_uc010prf.1_Missense_Mutation_p.L214R|TMCC2_uc001hca.2_Missense_Mutation_p.L67R|TMCC2_uc001hcb.1_Missense_Mutation_p.L52R|TMCC2_uc001hcc.1_5'UTR|TMCC2_uc001hcd.2_Missense_Mutation_p.L59R	NM_014858	NP_055673	O75069	TMCC2_HUMAN	transmembrane and coiled-coil domain family 2	292						integral to membrane	protein binding			pancreas(1)	1	Breast(84;0.0871)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CATTGACCACCTGCACCAGAAG	0.634													3	35					0	0	0.004672	0	0
PLXNA2	5362	broad.mit.edu	37	1	208257771	208257771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:208257771G>A	uc001hgz.2	-	10	3010	c.2252C>T	c.(2251-2253)CCC>CTC	p.P751L		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	751	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GCGCAGAGCGGGGACCCGGTG	0.602													12	85					0	0	0.001855	0	0
PPP2R5A	5525	broad.mit.edu	37	1	212533979	212533979	+	Splice_Site	SNP	G	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:212533979G>C	uc001hjb.2	+	13	1903	c.1329_splice	c.e13-1	p.R443_splice	PPP2R5A_uc010ptd.1_Splice_Site_p.R384_splice	NM_006243	NP_006234	Q15172	2A5A_HUMAN	protein phosphatase 2, regulatory subunit B						negative regulation of establishment of protein localization in plasma membrane|negative regulation of lipid kinase activity|positive regulation of protein dephosphorylation|signal transduction	chromosome, centromeric region|cytoplasm|nucleus|protein phosphatase type 2A complex	kinase binding|protein phosphatase type 2A regulator activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0125)|all cancers(67;0.029)|Epithelial(68;0.154)|GBM - Glioblastoma multiforme(131;0.155)		TTTATCTACAGAGAGAAAAAG	0.338													4	42					0	0	0.001168	0	0
CENPF	1063	broad.mit.edu	37	1	214815371	214815371	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:214815371G>A	uc001hkm.2	+	12	3864	c.3690G>A	c.(3688-3690)GAG>GAA	p.E1230E		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		GTGAGAAGGAGAAGGAGTGCC	0.368													7	49					0	0	0.004482	0	0
USH2A	7399	broad.mit.edu	37	1	215847907	215847907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:215847907G>A	uc001hku.1	-	63	13733	c.13346C>T	c.(13345-13347)TCT>TTT	p.S4449F		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4449	Fibronectin type-III 30.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CAATGTTGGAGAGTCCATGTT	0.473										HNSCC(13;0.011)			7	56					0	0	0.003080	0	0
C1orf65	164127	broad.mit.edu	37	1	223568659	223568659	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:223568659C>T	uc001hoa.2	+	1	1945	c.1842C>T	c.(1840-1842)CTC>CTT	p.L614L		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	614										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		AGGCCCAGCTCCGTGCCTGTC	0.552													3	25					0	0	0.000602	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227216516	227216516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr1:227216516G>A	uc001hqr.2	-	29	5112	c.4169C>T	c.(4168-4170)TCA>TTA	p.S1390L	CDC42BPA_uc001hqq.2_Missense_Mutation_p.S689L|CDC42BPA_uc001hqs.2_Missense_Mutation_p.S1309L|CDC42BPA_uc009xes.2_Missense_Mutation_p.S1362L|CDC42BPA_uc010pvs.1_Missense_Mutation_p.S1370L|CDC42BPA_uc001hqp.2_Missense_Mutation_p.S546L|CDC42BPA_uc001hqt.2_Missense_Mutation_p.S268L|CDC42BPA_uc001hqu.1_Missense_Mutation_p.S597L	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	1403	CNH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				TGCAATAAATGATAGTGTATG	0.408													11	96					0	0	0.013537	0	0
PRPF18	8559	broad.mit.edu	37	10	13642301	13642301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:13642301C>T	uc001imp.2	+	3	350	c.202C>T	c.(202-204)CTT>TTT	p.L68F	PRPF18_uc001imq.2_Intron	NM_003675	NP_003666	Q99633	PRP18_HUMAN	PRP18 pre-mRNA processing factor 18 homolog	68					mRNA processing|RNA splicing	nuclear speck|spliceosomal complex				central_nervous_system(1)	1						AGTGTTAGAACTTGAACTGGC	0.353													13	57					0	0	0.006122	0	0
NEBL	10529	broad.mit.edu	37	10	21074778	21074778	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:21074778G>A	uc001iqi.2	-	28	3340	c.2943C>T	c.(2941-2943)ATC>ATT	p.I981I	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Silent_p.I237I	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	981	SH3.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						GCACGTTGACGATGTAGTCGC	0.493													10	38					0	0	0.010729	0	0
MYO3A	53904	broad.mit.edu	37	10	26490227	26490227	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:26490227A>G	uc001isn.2	+	33	4939	c.4579A>G	c.(4579-4581)AAA>GAA	p.K1527E	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1527					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						AAGACCAAGGAAAGACAGGTA	0.249													3	16					0	0	0.009096	0	0
NRP1	8829	broad.mit.edu	37	10	33469205	33469205	+	Silent	SNP	G	A	A	rs144845322		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:33469205G>A	uc001iwx.3	-	17	3094	c.2571C>T	c.(2569-2571)ATC>ATT	p.I857I	NRP1_uc001iwv.3_Silent_p.I840I|NRP1_uc009xlz.2_Silent_p.I851I|NRP1_uc001iww.3_Silent_p.I669I|NRP1_uc001iwy.3_Silent_p.I850I	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	857	Helical; (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TGGTGATGAGGATGGGGTCTA	0.532													14	125					0	0	0.004656	0	0
LOC441666	441666	broad.mit.edu	37	10	42832122	42832122	+	RNA	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:42832122C>T	uc010qey.1	-	3		c.1853G>A				NR_024380				Homo sapiens noncoding mRNA sequence.												0						CAGTAAAAGGCTTTGCCACAT	0.348													3	12					0	0	0.009096	0	0
PCDH15	65217	broad.mit.edu	37	10	55943256	55943256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:55943256G>A	uc001jju.1	-	13	1933	c.1538C>T	c.(1537-1539)TCC>TTC	p.S513F	PCDH15_uc010qhq.1_Missense_Mutation_p.S518F|PCDH15_uc010qhr.1_Missense_Mutation_p.S513F|PCDH15_uc010qhs.1_Missense_Mutation_p.S525F|PCDH15_uc010qht.1_Missense_Mutation_p.S520F|PCDH15_uc010qhu.1_Missense_Mutation_p.S513F|PCDH15_uc001jjv.1_Missense_Mutation_p.S491F|PCDH15_uc010qhv.1_Missense_Mutation_p.S513F|PCDH15_uc010qhw.1_Missense_Mutation_p.S476F|PCDH15_uc010qhx.1_Missense_Mutation_p.S513F|PCDH15_uc010qhy.1_Missense_Mutation_p.S518F|PCDH15_uc010qhz.1_Missense_Mutation_p.S513F|PCDH15_uc010qia.1_Missense_Mutation_p.S491F|PCDH15_uc010qib.1_Missense_Mutation_p.S491F|PCDH15_uc001jjw.2_Missense_Mutation_p.S513F	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	513	Cadherin 5.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CACATCATAGGATATTTCAGG	0.378										HNSCC(58;0.16)			14	116					0	0	0.003163	0	0
STOX1	219736	broad.mit.edu	37	10	70644563	70644563	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:70644563C>T	uc001jos.2	+	3	1098	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F	STOX1_uc001jor.2_Intron|STOX1_uc009xpy.2_Intron|STOX1_uc001joq.2_Silent_p.F227F	NM_001130161	NP_001123633	Q6ZVD7	STOX1_HUMAN	storkhead box 1 isoform a	337						cytoplasm|nucleolus	DNA binding			kidney(1)|skin(1)	2						CTGCTCAGTTCCCACCTGAAG	0.423													12	79					0	0	0.003163	0	0
GRID1	2894	broad.mit.edu	37	10	87482861	87482861	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:87482861G>A	uc001kdl.1	-	12	1997	c.1896C>T	c.(1894-1896)ATC>ATT	p.I632I	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.I203I	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	632	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TGCCCATCACGATGCGCATGG	0.582										Multiple Myeloma(13;0.14)			5	33					0	0	0.000602	0	0
GRID1	2894	broad.mit.edu	37	10	87628917	87628917	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:87628917G>A	uc001kdl.1	-	6	902	c.801C>T	c.(799-801)ATC>ATT	p.I267I	GRID1_uc009xsu.1_RNA	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	267	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	CCAGATCCAGGATCTCCGGGT	0.507										Multiple Myeloma(13;0.14)			14	100					0	0	0.004990	0	0
LIPF	8513	broad.mit.edu	37	10	90431601	90431601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:90431601C>T	uc001kfg.1	+	6	714	c.548C>T	c.(547-549)TCC>TTC	p.S183F	LIPF_uc001kfh.1_Missense_Mutation_p.S160F|LIPF_uc010qmt.1_Missense_Mutation_p.S193F|LIPF_uc010qmu.1_Missense_Mutation_p.S150F	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	183					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		ATTGCCTTTTCCACCAATCCC	0.358													28	148					0	0	0.003755	0	0
IFIT2	3433	broad.mit.edu	37	10	91066196	91066196	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:91066196T>A	uc009xts.2	+	2	658	c.483T>A	c.(481-483)TTT>TTA	p.F161L	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron|uc001kgd.2_Intron	NM_001547	NP_001538	P09913	IFIT2_HUMAN	interferon-induced protein with	161	TPR 2.				negative regulation of protein binding|response to virus|type I interferon-mediated signaling pathway		protein binding			ovary(1)|skin(1)	2		Colorectal(252;0.0161)				AGGTGTGCTTTGAGAAGGCTC	0.498													5	40					0	0	0.000602	0	0
SORCS3	22986	broad.mit.edu	37	10	106849577	106849577	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:106849577A>C	uc001kyi.1	+	6	1300	c.1073A>C	c.(1072-1074)GAG>GCG	p.E358A		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	358	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GTGCACATGGAGGTGCGGACC	0.557													10	47					0	0	0.002450	0	0
SFXN4	119559	broad.mit.edu	37	10	120907304	120907304	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:120907304G>T	uc001leb.2	-	12	846	c.801C>A	c.(799-801)TTC>TTA	p.F267L	SFXN4_uc001ldy.2_Missense_Mutation_p.F151L|SFXN4_uc001ldz.2_Missense_Mutation_p.F151L|SFXN4_uc001lea.2_RNA	NM_213649	NP_998814	Q6P4A7	SFXN4_HUMAN	sideroflexin 4	267	Helical; (Potential).				iron ion homeostasis	integral to membrane|mitochondrial membrane	cation transmembrane transporter activity			ovary(1)	1		Lung NSC(174;0.094)|all_lung(145;0.123)		all cancers(201;0.0261)		AAAAGTAGGTGAAGACTTCAG	0.413													22	75					1.2476e-16	1.29468e-16	0.006320	1	0
FGFR2	2263	broad.mit.edu	37	10	123310941	123310941	+	Missense_Mutation	SNP	C	T	T	rs67257519		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:123310941C>T	uc010qtk.1	-	5	1134	c.487G>A	c.(487-489)GAA>AAA	p.E163K	FGFR2_uc010qtg.1_Missense_Mutation_p.E163K|FGFR2_uc010qth.1_Missense_Mutation_p.E48K|FGFR2_uc010qti.1_Missense_Mutation_p.E74K|FGFR2_uc010qtj.1_Missense_Mutation_p.E163K|FGFR2_uc010qtl.1_Missense_Mutation_p.E163K|FGFR2_uc010qtm.1_Missense_Mutation_p.E48K|FGFR2_uc001lfl.3_Missense_Mutation_p.E163K|FGFR2_uc001lfm.2_Missense_Mutation_p.E74K|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Missense_Mutation_p.E182K|FGFR2_uc010qto.1_Missense_Mutation_p.E67K|FGFR2_uc001lfo.1_Missense_Mutation_p.E182K|FGFR2_uc010qtp.1_Missense_Mutation_p.E182K|FGFR2_uc010qtq.1_Missense_Mutation_p.E182K	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	163	Ig-like C2-type 2.|Heparin-binding.|Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	AGCCGCTTTTCCATCTTTTCT	0.512		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				12	54					0	0	0.010729	0	0
INPP5A	3632	broad.mit.edu	37	10	134563053	134563053	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:134563053C>T	uc001llp.2	+	10	1013	c.765C>T	c.(763-765)GTC>GTT	p.V255V	INPP5A_uc001llo.1_Silent_p.V255V|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530	Q14642	I5P1_HUMAN	inositol polyphosphate-5-phosphatase A	255					cell communication	membrane	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|PH domain binding			skin(1)	1		all_cancers(35;8.59e-13)|all_epithelial(44;5.49e-09)|Lung NSC(174;0.000854)|all_lung(145;0.00146)|all_neural(114;0.0299)|Colorectal(31;0.0599)|Breast(234;0.0849)|Melanoma(40;0.124)|all_hematologic(284;0.196)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;0.000102)|Epithelial(32;0.00023)|all cancers(32;0.000326)		TGCAGACGGTCCGGGCCGCCG	0.622													3	60					0	0	0.009096	0	0
OR51S1	119692	broad.mit.edu	37	11	4869718	4869718	+	Missense_Mutation	SNP	G	A	A	rs115882083	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:4869718G>A	uc010qyo.1	-	1	721	c.721C>T	c.(721-723)CGC>TGC	p.R241C		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	241	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCCTTCCAGCGATCCTCTCTG	0.522													10	61					0	0	0.010729	0	0
OR10A3	26496	broad.mit.edu	37	11	7960551	7960551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:7960551C>T	uc010rbi.1	-	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGATTAATTTCATTGGGGCCA	0.413													7	74					0	0	0.006214	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18956018	18956018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:18956018G>A	uc001mpg.2	-	1	532	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	105	Helical; Name=3; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						TGCAAAGTAGGAAAACATCAT	0.547													4	218					0	0	0.000602	0	0
NAV2	89797	broad.mit.edu	37	11	19914094	19914094	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:19914094C>T	uc010rdm.1	+	7	1315	c.954C>T	c.(952-954)TCC>TCT	p.S318S	NAV2_uc001mpp.2_Silent_p.S231S|NAV2_uc001mpr.3_Silent_p.S295S	NM_145117	NP_660093	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 2	318						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						ATGATAAATCCAAACCAGTCA	0.542													7	46					0	0	0.003080	0	0
ANO5	203859	broad.mit.edu	37	11	22249077	22249077	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:22249077T>G	uc001mqi.2	+	7	910	c.593T>G	c.(592-594)CTC>CGC	p.L198R	ANO5_uc001mqj.2_Missense_Mutation_p.L197R	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	198	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CGGCAGGAGCTCTTCCTCATC	0.453													12	93					0	0	0.013537	0	0
GAS2	2620	broad.mit.edu	37	11	22777399	22777399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:22777399G>A	uc009yie.2	+	7	929	c.623G>A	c.(622-624)CGA>CAA	p.R208Q	GAS2_uc001mqm.2_Missense_Mutation_p.R208Q|GAS2_uc001mqn.2_RNA|GAS2_uc001mqo.2_Missense_Mutation_p.R208Q	NM_001143830	NP_001137302	O43903	GAS2_HUMAN	growth arrest-specific 2	208	GAR.				cell cycle arrest|cellular component disassembly involved in apoptosis|regulation of cell shape	actin filament|cytosol|membrane				ovary(1)|skin(1)	2						CAGGTGAAACGAATTTCTGAA	0.448													5	31					0	0	0.001168	0	0
NUP160	23279	broad.mit.edu	37	11	47830020	47830020	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:47830020G>T	uc001ngm.2	-	18	2388	c.2303C>A	c.(2302-2304)CCC>CAC	p.P768H	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	768					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding	p.P768S(1)		ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TAAGAGTAGGGGAGCTGTTCG	0.408													5	61					2.0095e-06	2.0686e-06	0.001984	1	0
OR4A15	81328	broad.mit.edu	37	11	55135721	55135721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:55135721C>T	uc010rif.1	+	1	362	c.362C>T	c.(361-363)TCC>TTC	p.S121F		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	121	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAGACCATTTCCTTTCAGGGT	0.388													27	174					0	0	0.008361	0	0
SDHAF2	54949	broad.mit.edu	37	11	61205149	61205149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:61205149C>T	uc001nrt.2	+	2	111	c.89C>T	c.(88-90)TCA>TTA	p.S30L		NM_017841	NP_060311	Q9NX18	SDHF2_HUMAN	succinate dehydrogenase complex assembly factor	30					mitochondrial electron transport, succinate to ubiquinone|protein-FAD linkage	mitochondrion	protein binding			ovary(2)	2						AGTGTGACATCATTCAGACGC	0.433									Familial_Paragangliomas				16	149					0	0	0.008871	0	0
AHNAK	79026	broad.mit.edu	37	11	62298311	62298311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:62298311G>A	uc001ntl.2	-	5	3878	c.3578C>T	c.(3577-3579)CCC>CTC	p.P1193L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1193					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				GGAGATCTTGGGGGTCTTGAA	0.512													38	317					0	0	0.007835	0	0
TIGD3	220359	broad.mit.edu	37	11	65124093	65124093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:65124093G>A	uc001odo.3	+	2	977	c.814G>A	c.(814-816)GAG>AAG	p.E272K		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	272	DDE.				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						AGTGGTGGAGGAGCTGGCAGG	0.652													14	76					0	0	0.002450	0	0
CARNS1	57571	broad.mit.edu	37	11	67187009	67187009	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:67187009C>T	uc009yrp.2	+	5	987	c.535C>T	c.(535-537)CTG>TTG	p.L179L	PPP1CA_uc001okx.1_Silent_p.Q63Q|CARNS1_uc010rpr.1_Silent_p.L302L|CARNS1_uc001olc.3_Silent_p.L318L	NM_020811	NP_065862	A5YM72	CRNS1_HUMAN	ATP-grasp domain containing 1	179					carnosine biosynthetic process		ATP binding|carnosine synthase activity|metal ion binding				0						GGCATGGCGTCTGCACCCGCG	0.672													4	13					0	0	0.000602	0	0
P4HA3	283208	broad.mit.edu	37	11	73997013	73997013	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:73997013G>A	uc001ouz.2	-	7	994	c.951C>T	c.(949-951)ATC>ATT	p.I317I	P4HA3_uc001ouy.3_RNA|P4HA3_uc010rrj.1_Silent_p.I317I	NM_182904	NP_878907	Q7Z4N8	P4HA3_HUMAN	prolyl 4-hydroxylase, alpha III subunit	317						endoplasmic reticulum lumen	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			skin(1)	1	Breast(11;2.31e-05)					AGAGGCTAGGGATCTGGTAGA	0.493													14	116					0	0	0.006122	0	0
GDPD5	81544	broad.mit.edu	37	11	75160936	75160936	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:75160936G>A	uc001owo.3	-	8	1005	c.468C>T	c.(466-468)TCC>TCT	p.S156S	GDPD5_uc001owp.3_Silent_p.S156S|GDPD5_uc001own.3_5'UTR|GDPD5_uc009yuc.2_Silent_p.S18S|GDPD5_uc009yud.2_Intron|GDPD5_uc009yue.1_Intron	NM_030792	NP_110419	Q8WTR4	GDPD5_HUMAN	glycerophosphodiester phosphodiesterase domain	156	Extracellular (Potential).				glycerol metabolic process|lipid metabolic process|nervous system development	endomembrane system|growth cone|integral to membrane|perinuclear region of cytoplasm	glycerophosphodiester phosphodiesterase activity			ovary(1)	1						TCACCTGCAGGGAGATCAGCA	0.537													3	54					0	0	0.009096	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103059271	103059271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:103059271G>A	uc001pho.2	+	44	7330	c.7186G>A	c.(7186-7188)GGT>AGT	p.G2396S	DYNC2H1_uc001phn.1_Missense_Mutation_p.G2396S|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2396	AAA 3 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		GGAATGGGTTGGTCTAGAAAA	0.318													5	74					0	0	0.001984	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103059315	103059315	+	Silent	SNP	A	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:103059315A>T	uc001pho.2	+	44	7374	c.7230A>T	c.(7228-7230)GGA>GGT	p.G2410G	DYNC2H1_uc001phn.1_Silent_p.G2410G|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2410	AAA 3 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CAGCTGGAGGAAGACTGGGAA	0.333													5	50					0	0	0.000602	0	0
GRIA4	2893	broad.mit.edu	37	11	105804641	105804641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:105804641G>A	uc001pix.2	+	14	2686	c.2240G>A	c.(2239-2241)GGA>GAA	p.G747E	GRIA4_uc001piw.2_Missense_Mutation_p.G747E|GRIA4_uc010rvm.1_RNA|GRIA4_uc009yxl.1_RNA	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	747	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	AAAGTGGGAGGAAATCTGGAT	0.438													11	72					0	0	0.013537	0	0
DLAT	1737	broad.mit.edu	37	11	111896990	111896990	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:111896990G>A	uc001pmo.2	+	2	1007	c.348G>A	c.(346-348)GGG>GGA	p.G116G	DLAT_uc009yyk.1_Silent_p.G116G|DLAT_uc010rwr.1_Silent_p.G116G	NM_001931	NP_001922	P10515	ODP2_HUMAN	dihydrolipoamide S-acetyltransferase precursor	116	Lipoyl-binding 1.				glycolysis|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial pyruvate dehydrogenase complex	dihydrolipoyllysine-residue acetyltransferase activity|protein binding				0		all_cancers(61;4.53e-11)|all_epithelial(67;2.76e-06)|Melanoma(852;9.42e-06)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0512)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)		Epithelial(105;4.87e-07)|BRCA - Breast invasive adenocarcinoma(274;6.83e-07)|all cancers(92;9.63e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.0557)	NADH(DB00157)	AAAAAGAGGGGGACAAAATCA	0.299													3	23					0	0	0.009096	0	0
HTR3B	9177	broad.mit.edu	37	11	113816831	113816831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:113816831C>T	uc001pok.2	+	9	1365	c.1298C>T	c.(1297-1299)TCC>TTC	p.S433F	HTR3B_uc001pol.2_Missense_Mutation_p.S422F	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	433	Helical; Name=4; (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		ACTCTGTGCTCCCTCTGGGCA	0.532													13	104					0	0	0.002450	0	0
SIK3	23387	broad.mit.edu	37	11	116729109	116729110	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:116729109_116729110CC>TT	uc001ppy.2	-	20	2789_2790	c.2753_2754GG>AA	c.(2752-2754)CGG>CAA	p.R918Q	SIK3_uc001ppz.2_Missense_Mutation_p.R757Q|SIK3_uc001pqa.2_Missense_Mutation_p.R858Q|SIK3_uc001ppw.2_Missense_Mutation_p.R275Q|SIK3_uc001ppx.2_Missense_Mutation_p.R296Q|SIK3_uc001pqb.2_Missense_Mutation_p.R221Q	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	918	Gln-rich.					cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						TGAGCGAATGCCGGGGAGAAAG	0.49													8	84					0	0	0.004672	0	0
DSCAML1	57453	broad.mit.edu	37	11	117391953	117391953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:117391953C>T	uc001prh.1	-	6	1287	c.1285G>A	c.(1285-1287)GAG>AAG	p.E429K	DSCAML1_uc001pri.1_Missense_Mutation_p.E233K	NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	369	Extracellular (Potential).|Ig-like C2-type 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AGCAGCGTCTCGTTGCTGAGC	0.642													19	150					0	0	0.010504	0	0
RNF26	79102	broad.mit.edu	37	11	119206803	119206803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:119206803G>A	uc001pwh.2	+	1	1567	c.971G>A	c.(970-972)AGA>AAA	p.R324K		NM_032015	NP_114404	Q9BY78	RNF26_HUMAN	ring finger protein 26	324							zinc ion binding			ovary(1)	1		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.8e-05)		AGGACCCGGAGACAGGACACT	0.622													5	56					0	0	0.000602	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120292521	120292521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:120292521C>T	uc001pxl.1	+	6	315	c.308C>T	c.(307-309)GCC>GTC	p.A103V	ARHGEF12_uc009zat.2_Missense_Mutation_p.A84V|ARHGEF12_uc010rzn.1_5'UTR|ARHGEF12_uc009zau.1_5'UTR	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	103	PDZ.				apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		GATGGAGCAGCCATGCGGGCT	0.328			T	MLL	AML								13	98					0	0	0.001855	0	0
OR8D4	338662	broad.mit.edu	37	11	123777236	123777236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:123777236G>A	uc010saa.1	+	1	98	c.98G>A	c.(97-99)GGA>GAA	p.G33E		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		CTCTTCTTAGGAATTTACACA	0.423													21	89					0	0	0.014323	0	0
VSIG2	23584	broad.mit.edu	37	11	124618311	124618311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:124618311C>T	uc001qas.2	-	6	902	c.826G>A	c.(826-828)GAG>AAG	p.E276K	VSIG2_uc001qat.2_Missense_Mutation_p.E276K	NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	276	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		CCATATGTCTCCTTGGGCTTC	0.612													20	116					0	0	0.004656	0	0
PKNOX2	63876	broad.mit.edu	37	11	125300032	125300032	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:125300032C>T	uc001qbu.2	+	12	1501	c.1187C>T	c.(1186-1188)CCC>CTC	p.P396L	PKNOX2_uc010saz.1_Missense_Mutation_p.P367L|PKNOX2_uc010sba.1_Missense_Mutation_p.P367L|PKNOX2_uc010sbb.1_Missense_Mutation_p.P332L|PKNOX2_uc001qbv.2_Missense_Mutation_p.P161L	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2	396						nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		GGGACAAACCCCGATGGTAAG	0.602													4	36					0	0	0.009096	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130343086	130343086	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:130343086C>T	uc010scd.1	+	8	2223	c.2223C>T	c.(2221-2223)TTC>TTT	p.F741F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	741	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		ACGGGCATTTCGTGGTGTCGG	0.637													8	93					0	0	0.008291	0	0
NTF3	4908	broad.mit.edu	37	12	5603796	5603796	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:5603796A>G	uc001qnl.3	+	1	499	c.416A>G	c.(415-417)TAC>TGC	p.Y139C	NTF3_uc001qnk.3_Missense_Mutation_p.Y152C	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	139					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						CGGAAACGGTACGCGGAGCAT	0.602													21	102					0	0	0.003330	0	0
DUSP16	80824	broad.mit.edu	37	12	12629865	12629865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:12629865C>T	uc001rao.1	-	7	2532	c.1900G>A	c.(1900-1902)GAG>AAG	p.E634K	DUSP16_uc001ram.1_5'Flank|DUSP16_uc001ran.1_Missense_Mutation_p.E486K	NM_030640	NP_085143	Q9BY84	DUS16_HUMAN	dual specificity phosphatase 16	634					inactivation of MAPK activity|MAPK export from nucleus|MAPK phosphatase export from nucleus, leptomycin B sensitive	cytoplasmic membrane-bounded vesicle|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		Prostate(47;0.0687)		BRCA - Breast invasive adenocarcinoma(232;0.0203)		ATGATGCTCTCTCCAAATTCC	0.522													35	235					0	0	0.006999	0	0
DDX11	1663	broad.mit.edu	37	12	31249577	31249577	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:31249577G>A	uc001rjt.1	+	16	1779	c.1528G>A	c.(1528-1530)GGA>AGA	p.G510R	DDX11_uc001rjr.1_Missense_Mutation_p.G510R|DDX11_uc001rjs.1_Missense_Mutation_p.G510R|DDX11_uc001rju.1_Missense_Mutation_p.G188R|DDX11_uc001rjv.1_Missense_Mutation_p.G510R|DDX11_uc001rjw.1_Missense_Mutation_p.G484R|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	510					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					CCAGCTCTTTGGATTCACTGA	0.592										Multiple Myeloma(12;0.14)			9	57					0	0	0.006214	0	0
ARID2	196528	broad.mit.edu	37	12	46230641	46230641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:46230641C>T	uc001ros.1	+	8	890	c.890C>T	c.(889-891)TCC>TTC	p.S297F	ARID2_uc001ror.2_Missense_Mutation_p.S297F|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_5'Flank|ARID2_uc001rot.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	297					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGAAATCTTTCCTTTGAGGAG	0.398													15	88					0	0	0.006122	0	0
ARID2	196528	broad.mit.edu	37	12	46231200	46231200	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:46231200G>C	uc001ros.1	+	9	1120	c.1120G>C	c.(1120-1122)GGC>CGC	p.G374R	ARID2_uc001ror.2_Missense_Mutation_p.G374R|ARID2_uc009zkg.1_5'UTR|ARID2_uc009zkh.1_Missense_Mutation_p.G20R|ARID2_uc001rot.1_Missense_Mutation_p.G20R	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	374					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AAAGATGAGAGGTGAGTTTTC	0.308													8	57					0	0	0.003080	0	0
ARID2	196528	broad.mit.edu	37	12	46243878	46243878	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:46243878C>T	uc001ros.1	+	15	1972	c.1972C>T	c.(1972-1974)CAA>TAA	p.Q658*	ARID2_uc001ror.2_Nonsense_Mutation_p.Q658*|ARID2_uc009zkg.1_Nonsense_Mutation_p.Q114*|ARID2_uc009zkh.1_Nonsense_Mutation_p.Q285*|ARID2_uc001rou.1_5'UTR	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	658					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		TGTTGCCAACCAATCTTCAAA	0.383													13	123					0	0	0.003163	0	0
MFSD5	84975	broad.mit.edu	37	12	53647064	53647064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:53647064G>A	uc001sci.1	+	2	636	c.445G>A	c.(445-447)GAG>AAG	p.E149K	MFSD5_uc001sch.1_Missense_Mutation_p.E256K	NM_032889	NP_116278	Q6N075	MFSD5_HUMAN	major facilitator superfamily domain containing	149					transport	integral to membrane				skin(2)|ovary(1)	3						CTCAGCCTTCGAGGCCTGGTA	0.557													45	245					0	0	0.014410	0	0
ITGA5	3678	broad.mit.edu	37	12	54797093	54797093	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:54797093G>A	uc001sga.2	-	18	1860	c.1792C>T	c.(1792-1794)CGA>TGA	p.R598*		NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	598	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						AGTTTGTCTCGAAATTCTGAC	0.572													22	158					0	0	0.002780	0	0
LRP1	4035	broad.mit.edu	37	12	57605751	57605751	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:57605751C>G	uc001snd.2	+	87	13766	c.13300C>G	c.(13300-13302)CTG>GTG	p.L4434V		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	4434	Helical; (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GCTGCTGCTGCTGGTTCTGGT	0.547													3	163					0	0	0.004672	0	0
TMEM5	10329	broad.mit.edu	37	12	64202701	64202701	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:64202701G>A	uc001srq.1	+	6	1265	c.1161G>A	c.(1159-1161)AAG>AAA	p.K387K	TMEM5_uc001srr.1_Silent_p.K284K|TMEM5_uc001srs.1_Silent_p.K127K	NM_014254	NP_055069	Q9Y2B1	TMEM5_HUMAN	transmembrane protein 5	387	Extracellular (Potential).					integral to plasma membrane					0		Myeloproliferative disorder(1001;0.0255)	BRCA - Breast invasive adenocarcinoma(9;0.0985)	GBM - Glioblastoma multiforme(28;9e-08)|BRCA - Breast invasive adenocarcinoma(357;0.000175)		TCTTTATCAAGAACTGGAAGG	0.403													6	44					0	0	0.001168	0	0
CAND1	55832	broad.mit.edu	37	12	67699410	67699411	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:67699410_67699411CC>TT	uc001stn.2	+	10	2399_2400	c.1962_1963CC>TT	c.(1960-1965)ATCCTT>ATTTTT	p.L655F	CAND1_uc001sto.2_Missense_Mutation_p.L165F	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	655	HEAT 15.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		GGGTTCCTATCCTTGCTTCATT	0.406													11	104					0	0	0.004672	0	0
MDM1	56890	broad.mit.edu	37	12	68717015	68717015	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:68717015G>A	uc001stz.2	-	5	775	c.639C>T	c.(637-639)TTC>TTT	p.F213F	MDM1_uc010stc.1_Silent_p.F168F|MDM1_uc009zqv.1_5'UTR	NM_017440	NP_059136	Q8TC05	MDM1_HUMAN	mouse Mdm1 nuclear protein homolog isoform 1	213						nucleus				ovary(3)|skin(2)	5			Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.018)	GBM - Glioblastoma multiforme(7;0.000174)		TTTTATTGTGGAAAACCTTAA	0.303													7	72					0	0	0.004482	0	0
CCDC41	51134	broad.mit.edu	37	12	94806245	94806245	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:94806245C>G	uc001tdd.2	-	3	608	c.22G>C	c.(22-24)GAT>CAT	p.D8H	CCDC41_uc001tde.2_Missense_Mutation_p.D8H|CCDC41_uc009zsw.1_Intron|CCDC41_uc001tdf.2_Missense_Mutation_p.D8H	NM_016122	NP_057206	Q9Y592	CCD41_HUMAN	NY-REN-58 antigen	Error:Variant_position_missing_in_Q9Y592_after_alignment											0						GTGTCCATATCGGTAAATGTG	0.393													9	79					0	0	0.006214	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100496628	100496628	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:100496628T>A	uc001tgq.2	-	4	483	c.254A>T	c.(253-255)GAT>GTT	p.D85V	UHRF1BP1L_uc001tgr.2_Missense_Mutation_p.D85V	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	85										ovary(2)	2						TATTACTTTATCCAGGGACTA	0.294													7	41					0	0	0.001984	0	0
DNAH10	196385	broad.mit.edu	37	12	124332625	124332625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr12:124332625G>A	uc001uft.3	+	32	5603	c.5578G>A	c.(5578-5580)GAA>AAA	p.E1860K		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1860	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CAACTGTGGCGAAGGCATGGA	0.572													24	89					0	0	0.006320	0	0
LATS2	26524	broad.mit.edu	37	13	21562052	21562053	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr13:21562052_21562053GG>AA	uc009zzs.2	-	4	2231_2232	c.1866_1867CC>TT	c.(1864-1869)AACCGG>AATTGG	p.R623W	LATS2_uc001unr.3_Missense_Mutation_p.R623W	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	623					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		TGCAGCCTCCGGTTAACCTTCT	0.475													23	128					0	0	0.004672	0	0
ATP12A	479	broad.mit.edu	37	13	25255747	25255747	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr13:25255747C>T	uc001upp.2	+	2	244	c.57C>T	c.(55-57)ATC>ATT	p.I19I	ATP12A_uc010aaa.2_Silent_p.I19I	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	19	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CTAAGGACATCGTGAAAACAG	0.468													7	74					0	0	0.001984	0	0
MTUS2	23281	broad.mit.edu	37	13	29599397	29599397	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr13:29599397G>T	uc001usl.3	+	1	650	c.592G>T	c.(592-594)GGG>TGG	p.G198W		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	188						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AGCTGCAGTCGGGAGCCTGAC	0.582													6	54					2.7689e-08	2.86566e-08	0.001984	1	0
SETDB2	83852	broad.mit.edu	37	13	50055134	50055134	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr13:50055134C>T	uc001vcz.2	+	9	1980	c.1074C>T	c.(1072-1074)AAC>AAT	p.N358N	SETDB2_uc010adg.2_Silent_p.N334N|SETDB2_uc001vcy.3_Silent_p.N346N|SETDB2_uc010adh.2_Silent_p.N346N|SETDB2_uc001vda.2_Silent_p.N346N	NM_031915	NP_114121	Q96T68	SETB2_HUMAN	SET domain, bifurcated 2 isoform a	358	Pre-SET.				cell division|chromosome segregation|heart looping|left/right axis specification|mitosis|negative regulation of transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone methyltransferase activity (H3-K9 specific)|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;0.000408)|Breast(56;0.00131)|Prostate(109;0.00446)|Hepatocellular(98;0.0556)|Glioma(44;0.236)	KIRC - Kidney renal clear cell carcinoma(9;0.206)	GBM - Glioblastoma multiforme(99;3.1e-09)		TGTGTCAAAACCGAGTTGTCC	0.413													10	104					0	0	0.013537	0	0
ERCC5	2073	broad.mit.edu	37	13	103504564	103504564	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr13:103504564T>C	uc001vpw.2	+	2	628	c.185T>C	c.(184-186)CTC>CCC	p.L62P	ERCC5_uc001vpu.1_Missense_Mutation_p.L516P|ERCC5_uc010tjb.1_Missense_Mutation_p.L62P|ERCC5_uc010tjc.1_RNA|ERCC5_uc010tjd.1_5'UTR	NM_000123	NP_000114	P28715	ERCC5_HUMAN	XPG-complementing protein	62	N-domain.				negative regulation of apoptosis|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|response to UV-C|transcription-coupled nucleotide-excision repair|UV protection	nucleoplasm	bubble DNA binding|double-stranded DNA binding|endodeoxyribonuclease activity|metal ion binding|protein homodimerization activity|protein N-terminus binding|single-stranded DNA binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					TTTCATCGGCTCTGCAAACTC	0.388			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				3	56					0	0	0.004672	0	0
OR4M1	441670	broad.mit.edu	37	14	20248759	20248759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr14:20248759C>T	uc010tku.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AAGATAATTTCCTTTGGTGGA	0.448													42	409					0	0	0.014410	0	0
KHNYN	23351	broad.mit.edu	37	14	24906411	24906411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr14:24906411G>A	uc001wph.3	+	8	2159	c.1957G>A	c.(1957-1959)GTG>ATG	p.V653M	KHNYN_uc010tpc.1_Missense_Mutation_p.V694M|KHNYN_uc010alw.2_Missense_Mutation_p.V653M	NM_015299	NP_056114	O15037	KHNYN_HUMAN	hypothetical protein LOC23351	653										ovary(2)|liver(1)	3						GGATCACAAAGTGGACTTCAT	0.567											OREG0022628	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	81					0	0	0.002450	0	0
TBPL2	387332	broad.mit.edu	37	14	55903709	55903709	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr14:55903709G>C	uc001xby.2	-	2	178	c.178C>G	c.(178-180)CTG>GTG	p.L60V		NM_199047	NP_950248	Q6SJ96	TBPL2_HUMAN	TATA box binding protein like 2	60					multicellular organismal development|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding				0						GGGCTGAACAGGGGAGACCTG	0.453													17	104					0	0	0.003954	0	0
PCNX	22990	broad.mit.edu	37	14	71485730	71485730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr14:71485730C>T	uc001xmo.2	+	12	3447	c.3001C>T	c.(3001-3003)CGT>TGT	p.R1001C	PCNX_uc010are.1_Missense_Mutation_p.R890C|PCNX_uc010arf.1_5'UTR	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1001						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		CCGTAGAAATCGTGAGATCCT	0.368													12	82					0	0	0.001855	0	0
TSHR	7253	broad.mit.edu	37	14	81610190	81610190	+	Silent	SNP	C	T	T	rs146917060		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr14:81610190C>T	uc001xvd.1	+	10	1944	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	596	Helical; Name=5; (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	CCTTCGTCATCGTCTGCTGCT	0.478			Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						32	200					0	0	0.005524	0	0
SERPINA3	12	broad.mit.edu	37	14	95088720	95088721	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr14:95088720_95088721GG>AA	uc001ydp.2	+	4	1039_1040	c.960_961GG>AA	c.(958-963)AGGGAC>AGAAAC	p.D321N	SERPINA3_uc001ydo.3_Missense_Mutation_p.D346N|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.D321N|SERPINA3_uc001yds.2_Missense_Mutation_p.D321N|SERPINA3_uc010avg.2_Missense_Mutation_p.D321N	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	321					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		CCATCTCGAGGGACTATAACCT	0.495													14	73					0	0	0.004672	0	0
OR4N4	283694	broad.mit.edu	37	15	22382594	22382594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr15:22382594G>A	uc001yuc.1	+	7	1103	c.122G>A	c.(121-123)GGA>GAA	p.G41E	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.G41E	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATCCTCCCTGGAAATTTTCTC	0.443													21	246					0	0	0.003330	0	0
RFX7	64864	broad.mit.edu	37	15	56390316	56390316	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr15:56390316A>G	uc010bfn.2	-	8	1070	c.1070T>C	c.(1069-1071)ATT>ACT	p.I357T	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.I171T	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	260					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						AACGATACCAATAGGTTGAGG	0.398													3	53					0	0	0.004672	0	0
DENND4A	10260	broad.mit.edu	37	15	66034088	66034088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr15:66034088G>A	uc002aph.2	-	5	974	c.596C>T	c.(595-597)TCG>TTG	p.S199L	DENND4A_uc002api.2_Missense_Mutation_p.S199L|DENND4A_uc002apj.3_Missense_Mutation_p.S199L|DENND4A_uc010ujj.1_Missense_Mutation_p.S199L	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	199	MABP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						CTTTGCCACCGATTTTTTATA	0.249													15	76					0	0	0.014323	0	0
EDC3	80153	broad.mit.edu	37	15	74963798	74963798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr15:74963798G>A	uc002ayn.2	-	6	970	c.482C>T	c.(481-483)TCC>TTC	p.S161F	EDC3_uc002ayo.2_Missense_Mutation_p.S161F|EDC3_uc002aym.2_Missense_Mutation_p.S161F	NM_001142443	NP_001135915	Q96F86	EDC3_HUMAN	enhancer of mRNA decapping 3	161					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1						CTACTTACAGGAGTTGTGCCG	0.458													13	78					0	0	0.004007	0	0
SLCO3A1	28232	broad.mit.edu	37	15	92647683	92647683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr15:92647683G>A	uc002bqx.2	+	4	1121	c.920G>A	c.(919-921)AGA>AAA	p.R307K	SLCO3A1_uc002bqy.2_Missense_Mutation_p.R307K|SLCO3A1_uc010boc.1_RNA|SLCO3A1_uc002bqz.1_Missense_Mutation_p.R249K	NM_013272	NP_037404	Q9UIG8	SO3A1_HUMAN	solute carrier organic anion transporter family,	307	Cytoplasmic (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	sodium-independent organic anion transmembrane transporter activity			skin(1)	1	Lung NSC(78;0.0158)|all_lung(78;0.0255)		BRCA - Breast invasive adenocarcinoma(143;0.0841)			CTCTCCGAAAGAGAATACGAG	0.587													5	37					0	0	0.000602	0	0
CRAMP1L	57585	broad.mit.edu	37	16	1706284	1706284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:1706284C>T	uc010uvh.1	+	9	1526	c.1526C>T	c.(1525-1527)CCT>CTT	p.P509L	CRAMP1L_uc002cmf.2_Intron	NM_020825	NP_065876	Q96RY5	CRML_HUMAN	Crm, cramped-like	509						nucleus	DNA binding				0						CCGGACGCTCCTGACAGGCCT	0.697													4	9					0	0	0.000602	0	0
ABCA3	21	broad.mit.edu	37	16	2373618	2373618	+	Silent	SNP	C	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:2373618C>G	uc002cpy.1	-	7	1231	c.519G>C	c.(517-519)CTG>CTC	p.L173L	ABCA3_uc010bsk.1_Silent_p.L173L|ABCA3_uc010bsl.1_Silent_p.L173L|ABCA3_uc002cpz.1_Silent_p.L173L	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	173					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CTGTCTCTTTCAGGAAAAAGG	0.488													6	405					0	0	0.001984	0	0
SRRM2	23524	broad.mit.edu	37	16	2815745	2815745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:2815745C>T	uc002crk.2	+	11	5765	c.5216C>T	c.(5215-5217)TCG>TTG	p.S1739L	SRRM2_uc002crj.1_Missense_Mutation_p.S1643L|SRRM2_uc002crl.1_Missense_Mutation_p.S1739L|SRRM2_uc010bsu.1_Missense_Mutation_p.S1643L	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1739	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GCCGAAAAATCGAGGTCTTCA	0.597													4	31					0	0	0.009096	0	0
ACSM1	116285	broad.mit.edu	37	16	20634851	20634851	+	Missense_Mutation	SNP	A	G	G	rs142695037	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:20634851A>G	uc002dhm.1	-	13	1759	c.1691T>C	c.(1690-1692)ATT>ACT	p.I564T	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.I564T	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	564					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CTTCCGTTCAATCTTGCCAGT	0.473													3	99					0	0	0.004672	0	0
ACSM1	116285	broad.mit.edu	37	16	20681188	20681188	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:20681188G>A	uc002dhm.1	-	5	941	c.873C>T	c.(871-873)ATC>ATT	p.I291I	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.I291I	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	291					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GCAGATGGTGGATAAAGACTG	0.478													9	83					0	0	0.013537	0	0
DNAH3	55567	broad.mit.edu	37	16	21069510	21069510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:21069510C>T	uc010vbe.1	-	27	3821	c.3821G>A	c.(3820-3822)CGA>CAA	p.R1274Q		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1274	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCAGTGATTTCGAGGGACCTG	0.507													4	37					0	0	0.009096	0	0
COG7	91949	broad.mit.edu	37	16	23464251	23464251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:23464251C>T	uc002dlo.2	-	1	253	c.65G>A	c.(64-66)AGG>AAG	p.R22K		NM_153603	NP_705831	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	22					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding				0				GBM - Glioblastoma multiforme(48;0.0401)		GGAGCCGGCCCTGAAGGCCGC	0.617													6	61					0	0	0.001168	0	0
ERN2	10595	broad.mit.edu	37	16	23718381	23718381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:23718381G>A	uc002dma.3	-	5	639	c.470C>T	c.(469-471)CCT>CTT	p.P157L	ERN2_uc010bxp.2_Missense_Mutation_p.P157L|ERN2_uc010bxq.1_5'UTR	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	109	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		AACCAGCTCAGGGATGGTGAA	0.532													3	68					0	0	0.009096	0	0
RBBP6	5930	broad.mit.edu	37	16	24578597	24578597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:24578597C>T	uc002dmh.2	+	15	2763	c.1723C>T	c.(1723-1725)CCT>TCT	p.P575S	RBBP6_uc010vcb.1_Missense_Mutation_p.P442S|RBBP6_uc002dmi.2_Missense_Mutation_p.P575S|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.P442S	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	575					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		acttcctctccctccgggtgt	0.308													25	177					0	0	0.004656	0	0
GTF3C1	2975	broad.mit.edu	37	16	27476016	27476016	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:27476016G>A	uc002dov.1	-	34	5537	c.5497C>T	c.(5497-5499)CAG>TAG	p.Q1833*	GTF3C1_uc002dou.2_Nonsense_Mutation_p.Q1833*	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1833						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GGTCTGGCCTGGGGGTCTTCT	0.682													3	44					0	0	0.004672	0	0
VPS35	55737	broad.mit.edu	37	16	46697009	46697009	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:46697009C>T	uc002eef.3	-	14	1812	c.1713G>A	c.(1711-1713)TTG>TTA	p.L571L	VPS35_uc002eed.2_Silent_p.L392L|VPS35_uc002eee.2_Silent_p.L532L	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	571					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				CTGCTTTGATCAAAGCACTGA	0.378													8	39					0	0	0.003080	0	0
SALL1	6299	broad.mit.edu	37	16	51172617	51172617	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:51172617C>T	uc010vgs.1	-	2	3547	c.3516G>A	c.(3514-3516)ACG>ACA	p.T1172T	SALL1_uc010vgr.1_Silent_p.T1075T|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1172	C2H2-type 9.				adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGCCTTTAGTCGTGAAAGCTC	0.488													7	50					0	0	0.006214	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53682940	53682940	+	Missense_Mutation	SNP	C	T	T	rs142349647	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:53682940C>T	uc002ehp.2	-	16	2304	c.2240G>A	c.(2239-2241)CGA>CAA	p.R747Q	RPGRIP1L_uc002eho.3_Missense_Mutation_p.R747Q|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.R747Q|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.R747Q|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.R747Q	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	747					negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				TGCCCTTTCTCGATAAAGTCG	0.408													13	138					0	0	0.003163	0	0
MMP2	4313	broad.mit.edu	37	16	55523723	55523723	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:55523723C>T	uc002ehz.3	+	7	1478	c.1167C>T	c.(1165-1167)TTC>TTT	p.F389F	MMP2_uc010vhd.1_Silent_p.F313F|MMP2_uc010ccc.2_Silent_p.F339F	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	389	Fibronectin type-II 3.|Collagen-binding.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	AGTGGGGCTTCTGCCCTGACC	0.572													8	13					0	0	0.004482	0	0
CETP	1071	broad.mit.edu	37	16	56997015	56997015	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:56997015A>G	uc002eki.2	+	2	269	c.212A>G	c.(211-213)CAA>CGA	p.Q71R	CETP_uc002ekj.2_Missense_Mutation_p.Q71R	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	71					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						CTCCTTGGCCAAGTCAAGTAT	0.627													5	60					0	0	0.001984	0	0
NFATC3	4775	broad.mit.edu	37	16	68225518	68225519	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:68225518_68225519CC>TT	uc002evo.1	+	9	3156_3157	c.2946_2947CC>TT	c.(2944-2949)GGCCAG>GGTTAG	p.Q983*	NFATC3_uc010vkl.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkm.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkn.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vko.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkp.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkq.1_Nonsense_Mutation_p.Q504*|NFATC3_uc002evl.2_Nonsense_Mutation_p.Q504*|NFATC3_uc002evk.2_Nonsense_Mutation_p.Q983*|NFATC3_uc002evm.1_Nonsense_Mutation_p.Q983*|NFATC3_uc002evn.1_Nonsense_Mutation_p.Q983*|NFATC3_uc010vkr.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vks.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkt.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vku.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkv.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkw.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkx.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vky.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vkz.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vla.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vlb.1_Nonsense_Mutation_p.Q504*|NFATC3_uc010vlc.1_Nonsense_Mutation_p.Q504*	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	983					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		AAAGTACGGGCCAGGGGGGTCT	0.505													12	198					0	0	0.004672	0	0
MARVELD3	91862	broad.mit.edu	37	16	71668679	71668679	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:71668679G>A	uc002fat.2	+	3	1242	c.1179G>A	c.(1177-1179)GAG>GAA	p.E393E	MARVELD3_uc002fau.2_Intron|MARVELD3_uc010cge.2_Intron	NM_052858	NP_443090	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 2	393	Cytoplasmic (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				AGCTAAAAGAGAAGCCAGCAG	0.483													5	54					0	0	0.001984	0	0
PMFBP1	83449	broad.mit.edu	37	16	72188248	72188248	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:72188248G>A	uc002fcc.3	-	4	448	c.276C>T	c.(274-276)GTC>GTT	p.V92V	PMFBP1_uc002fcd.2_Silent_p.V92V|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	92	Potential.									ovary(2)	2		Ovarian(137;0.179)				CTTGTTGAAGGACCAGCAATT	0.468													12	109					0	0	0.002450	0	0
ADAD2	161931	broad.mit.edu	37	16	84229942	84229942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:84229942G>A	uc002fhr.2	+	8	1606	c.1492G>A	c.(1492-1494)GTT>ATT	p.V498I	ADAD2_uc002fhq.2_Missense_Mutation_p.V580I|uc002fhs.1_Intron	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	498	A to I editase.				RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						TGGCATCGAGGTTGTGGATGT	0.677													5	48					0	0	0.001984	0	0
DEF8	54849	broad.mit.edu	37	16	90023927	90023927	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr16:90023927C>T	uc002fpn.1	+	5	503	c.414C>T	c.(412-414)TTC>TTT	p.F138F	DEF8_uc002fpl.2_Silent_p.F77F|DEF8_uc002fpm.2_Silent_p.F77F|DEF8_uc002fpo.1_Silent_p.F77F|DEF8_uc002fpp.1_Intron|DEF8_uc010vpq.1_Silent_p.F17F|DEF8_uc010vpr.1_Silent_p.F77F	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	138					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		AGGGTCTGTTCCTGGCCTCTG	0.657													4	11					0	0	0.000602	0	0
TUSC5	286753	broad.mit.edu	37	17	1183460	1183460	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:1183460G>A	uc002fsi.1	+	1	504	c.165G>A	c.(163-165)CAG>CAA	p.Q55Q		NM_172367	NP_758955	Q8IXB3	TUSC5_HUMAN	LOST1	55					response to biotic stimulus	integral to membrane				skin(2)	2				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		ATCTGGAGCAGAACAGCCAGG	0.632													7	68					0	0	0.003080	0	0
TMEM88	92162	broad.mit.edu	37	17	7758414	7758414	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:7758414C>G	uc002giy.2	+	1	31	c.22C>G	c.(22-24)CAG>GAG	p.Q8E	CYB5D1_uc010cnn.1_5'Flank|CYB5D1_uc002gjb.3_5'Flank	NM_203411	NP_981956	Q6PEY1	TMM88_HUMAN	transmembrane protein 88	8						integral to membrane					0		all_cancers(10;0.00528)|Prostate(122;0.202)				CCCCGGGGCACAGCGAGCGGT	0.701													5	31					0	0	0.001168	0	0
MYH1	4619	broad.mit.edu	37	17	10411809	10411810	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:10411809_10411810CC>TT	uc002gmo.2	-	16	1861_1862	c.1767_1768GG>AA	c.(1765-1770)GTGGAC>GTAAAC	p.D590N	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	590	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						ATGTTGTAGTCCACGGTGCCAG	0.51													6	67					0	0	0.004672	0	0
SLC46A1	113235	broad.mit.edu	37	17	26727669	26727669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:26727669G>A	uc002hbf.1	-	5	1375	c.1279C>T	c.(1279-1281)CTC>TTC	p.L427F	SARM1_uc010crl.1_3'UTR|SARM1_uc002hbe.1_3'UTR|SLC46A1_uc002hbg.1_Missense_Mutation_p.P399L	NM_080669	NP_542400	Q96NT5	PCFT_HUMAN	proton-coupled folate transporter	427	Helical; (Potential).				cellular iron ion homeostasis|folic acid metabolic process	apical plasma membrane|cytoplasm|integral to membrane	folic acid binding|folic acid transporter activity|heme transporter activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Folic Acid(DB00158)	GCTCCCAGGAGGAAGGGGAAC	0.552													6	22					0	0	0.001168	0	0
KCNH4	23415	broad.mit.edu	37	17	40328133	40328133	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:40328133G>A	uc002hzb.2	-	5	1101	c.768C>T	c.(766-768)ACC>ACT	p.T256T		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	256	Extracellular (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		AAGTGATGGGGGTGTCATCGT	0.592													22	130					0	0	0.002780	0	0
UBTF	7343	broad.mit.edu	37	17	42290269	42290269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:42290269G>A	uc002igb.2	-	6	645	c.578C>T	c.(577-579)TCG>TTG	p.S193L	UBTF_uc002igc.2_Missense_Mutation_p.S193L|UBTF_uc010czs.2_Missense_Mutation_p.S193L|UBTF_uc002igd.2_Missense_Mutation_p.S193L|UBTF_uc010czt.2_Missense_Mutation_p.S193L|UBTF_uc002ige.2_Missense_Mutation_p.S193L	NM_014233	NP_055048	P17480	UBF1_HUMAN	upstream binding transcription factor, RNA	193					positive regulation of transcription from RNA polymerase I promoter|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleolus|nucleoplasm	DNA binding|protein binding				0		Breast(137;0.00765)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TGGGATGTCCGATTTCTTGGC	0.587													25	170					0	0	0.007291	0	0
ACE	1636	broad.mit.edu	37	17	61557804	61557804	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:61557804C>T	uc002jau.1	+	5	784	c.762C>T	c.(760-762)CTC>CTT	p.L254L	ACE_uc010wpi.1_Silent_p.L254L|ACE_uc010ddu.1_Silent_p.L71L	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	254	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	ACCTGAACCTCCATGCCTTCG	0.607													13	107					0	0	0.003163	0	0
CD300LD	100131439	broad.mit.edu	37	17	72584873	72584873	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:72584873C>T	uc002jkz.2	-	2	185	c.156G>A	c.(154-156)CGG>CGA	p.R52R	C17orf77_uc002jla.1_Intron	NM_001115152	NP_001108624	Q6UXZ3	CLM4_HUMAN	CD300 molecule-like family member d precursor	52	Extracellular (Potential).|Ig-like V-type.					integral to membrane|plasma membrane	receptor activity				0						CTCCTTGACACCGCCACTTCA	0.468													24	127					0	0	0.003330	0	0
EXOC7	23265	broad.mit.edu	37	17	74099764	74099765	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:74099764_74099765GG>AA	uc002jqs.2	-	1	104_105	c.9_10CC>TT	c.(7-12)CCCCCA>CCTTCA	p.P4S	EXOC7_uc010dgv.1_5'Flank|EXOC7_uc002jqq.2_Missense_Mutation_p.P4S|EXOC7_uc010wsw.1_Missense_Mutation_p.P4S|EXOC7_uc010wsx.1_Missense_Mutation_p.P4S|EXOC7_uc002jqr.2_Missense_Mutation_p.P4S|EXOC7_uc010wsv.1_5'Flank|EXOC7_uc002jqu.2_Missense_Mutation_p.P4S|EXOC7_uc002jqv.2_Missense_Mutation_p.P4S	NM_001145297	NP_001138769	Q9UPT5	EXOC7_HUMAN	exocyst complex component 7 isoform 4	4					exocytosis|protein transport	centriolar satellite|cytosol|exocyst|plasma membrane	protein binding				0			LUSC - Lung squamous cell carcinoma(166;0.187)			GCCTCCTGTGGGGGAATCATCG	0.678													5	19					0	0	0.004672	0	0
FASN	2194	broad.mit.edu	37	17	80045901	80045901	+	Missense_Mutation	SNP	G	A	A	rs146356200		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:80045901G>A	uc002kdu.2	-	18	2912	c.2795C>T	c.(2794-2796)TCC>TTC	p.S932F	FASN_uc002kdw.1_Missense_Mutation_p.S148F	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	932					energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	TACCTCCAGGGACACTGTCCC	0.667													16	53					0	0	0.007413	0	0
NARF	26502	broad.mit.edu	37	17	80445854	80445854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr17:80445854C>T	uc002kfg.3	+	11	1332	c.1192C>T	c.(1192-1194)CGG>TGG	p.R398W	NARF_uc002kff.3_Missense_Mutation_p.R339W|NARF_uc010dit.2_Missense_Mutation_p.R444W|NARF_uc002kfj.3_Missense_Mutation_p.R350W|NARF_uc002kfi.3_RNA|NARF_uc002kfh.3_Missense_Mutation_p.R444W|NARF_uc002kfk.2_RNA	NM_012336	NP_036468	Q9UHQ1	NARF_HUMAN	nuclear prelamin A recognition factor isoform a	398						lamin filament	lamin binding			skin(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			GGCCCTGCTGCGGCAGATGGA	0.527													4	94					0	0	0.009096	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258025	9258025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:9258025C>T	uc002knv.2	+	9	5017	c.4760C>T	c.(4759-4761)TCA>TTA	p.S1587L	ANKRD12_uc002knw.2_Missense_Mutation_p.S1564L|ANKRD12_uc002knx.2_Missense_Mutation_p.S1564L|ANKRD12_uc010dkx.1_Missense_Mutation_p.S1294L	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1587						nucleus				ovary(2)|central_nervous_system(1)	3						GTGTTACCATCAGAAAAGGAC	0.393													16	75					0	0	0.006122	0	0
FAM38B	63895	broad.mit.edu	37	18	10696234	10696234	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:10696234G>A	uc002kor.3	-	5	700	c.560C>T	c.(559-561)CCG>CTG	p.P187L	FAM38B_uc002koq.2_Missense_Mutation_p.P85L	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2230						integral to membrane	ion channel activity			ovary(1)	1						AAACGGCCCCGGGACCTGGTC	0.527													8	64					0	0	0.006214	0	0
CIDEA	1149	broad.mit.edu	37	18	12264450	12264450	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:12264450C>T	uc002kqt.3	+	3	393	c.328C>T	c.(328-330)CCG>TCG	p.P110S	CIDEA_uc002kqu.3_Missense_Mutation_p.P144S|CIDEA_uc010dlc.2_RNA	NM_001279	NP_001270	O60543	CIDEA_HUMAN	cell death-inducing DFFA-like effector a isoform	110	CIDE-N.				DNA damage response, signal transduction resulting in induction of apoptosis|DNA fragmentation involved in apoptotic nuclear change|lipid metabolic process|lipid storage|negative regulation of apoptosis|negative regulation of cytokine secretion|negative regulation of lipid catabolic process|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of tumor necrosis factor production|positive regulation of sequestering of triglyceride|temperature homeostasis	mitochondrial envelope|nucleus	protein homodimerization activity			ovary(1)|central_nervous_system(1)	2						GAAGTGGATGCCGGTAAGCAA	0.453													4	29					0	0	0.000602	0	0
CEP76	79959	broad.mit.edu	37	18	12699056	12699056	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:12699056G>A	uc002kri.2	-	4	598	c.442C>T	c.(442-444)CGT>TGT	p.R148C	PSMG2_uc002krg.2_Intron|CEP76_uc002krh.3_5'UTR|CEP76_uc010wzz.1_Intron|CEP76_uc010xaa.1_5'UTR|CEP76_uc010xab.1_3'UTR	NM_024899	NP_079175	Q8TAP6	CEP76_HUMAN	centrosomal protein 76kDa	148					G2/M transition of mitotic cell cycle|regulation of centriole replication	centriole|cytosol	protein binding				0						GGTTTAGAACGAAAACGTTGG	0.373													13	56					0	0	0.002450	0	0
POTEC	388468	broad.mit.edu	37	18	14513675	14513675	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:14513675T>C	uc010dln.2	-	10	1973	c.1519A>G	c.(1519-1521)AAA>GAA	p.K507E	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	507	Potential.									skin(3)	3						GAATTCATTTTCTTTTCAGCC	0.284													3	107					0	0	0.009096	0	0
ANKRD29	147463	broad.mit.edu	37	18	21181252	21181252	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:21181252G>A	uc002kun.2	-	10	1001	c.844C>T	c.(844-846)CTA>TTA	p.L282L	ANKRD29_uc002kuo.2_Silent_p.L249L	NM_173505	NP_775776	Q8N6D5	ANR29_HUMAN	ankyrin repeat domain 29	282										ovary(3)|breast(1)	4	all_cancers(21;5.07e-05)|all_epithelial(16;2.49e-07)|Lung NSC(20;0.00211)|all_lung(20;0.00676)|Colorectal(14;0.0202)|Ovarian(20;0.127)					TTTTTGGTTAGTTCTGCCGGA	0.433													8	51					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	18	54814757	54814757	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:54814757C>T	uc002lgm.2	+	1	422	c.214C>T	c.(214-216)CTG>TTG	p.L72L						RecName: Full=Protein FAM44C;																		TTACCAAAACCTGAGCCAGAA	0.542													3	19					0	0	0.004672	0	0
CNDP2	55748	broad.mit.edu	37	18	72186305	72186305	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr18:72186305C>T	uc002llm.1	+	11	1494	c.1332C>T	c.(1330-1332)GCC>GCT	p.A444A	CNDP2_uc002lln.1_Silent_p.A360A|CNDP2_uc010dqs.2_Intron	NM_018235	NP_060705	Q96KP4	CNDP2_HUMAN	CNDP dipeptidase 2	444						cytoplasm	carboxypeptidase activity|metal ion binding|metallopeptidase activity|protein binding|tripeptidase activity			ovary(2)|skin(1)	3		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.22)		ATGACGGAGCCCACTCCCAGA	0.632													8	46					0	0	0.003080	0	0
C19orf21	126353	broad.mit.edu	37	19	758344	758344	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:758344C>T	uc002lpo.2	+	2	1481	c.1398C>T	c.(1396-1398)TCC>TCT	p.S466S		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	466										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCACGATGTCCCCGAGGCATC	0.612													12	65					0	0	0.002450	0	0
SLC39A3	29985	broad.mit.edu	37	19	2733194	2733194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:2733194G>A	uc002lwg.2	-	3	754	c.500C>T	c.(499-501)CCC>CTC	p.P167L	SLC39A3_uc010xgy.1_Missense_Mutation_p.P167L	NM_144564	NP_653165	Q9BRY0	S39A3_HUMAN	solute carrier family 39 (zinc transporter),	167	Cytoplasmic (Potential).					integral to membrane|plasma membrane	zinc ion transmembrane transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGCGCACGGGGCTGGCGCG	0.741													8	28					0	0	0.003080	0	0
CLEC4G	339390	broad.mit.edu	37	19	7794311	7794311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:7794311C>T	uc002mhp.3	-	9	892	c.823G>A	c.(823-825)GAC>AAC	p.D275N		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	275	Extracellular (Potential).|C-type lectin.					integral to membrane	protein binding|sugar binding				0						CACGGTGCGTCGTTCCACAGC	0.632													7	50					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9056625	9056625	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:9056625G>A	uc002mkp.2	-	3	31025	c.30821C>T	c.(30820-30822)TCC>TTC	p.S10274F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10276	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGCCAGTGGAAATAGTCTC	0.473													10	65					0	0	0.006214	0	0
CYP4F11	57834	broad.mit.edu	37	19	16034661	16034661	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:16034661G>A	uc002nbu.2	-	7	915	c.879C>T	c.(877-879)TCC>TCT	p.S293S	CYP4F11_uc010eab.1_Silent_p.S293S|CYP4F11_uc002nbt.2_Silent_p.S293S	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	293					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CTAAAGTCTTGGACTTTGCCT	0.493													18	143					0	0	0.012319	0	0
PDE4C	5143	broad.mit.edu	37	19	18330170	18330170	+	Silent	SNP	A	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:18330170A>T	uc010xqc.1	-	8	1320	c.840T>A	c.(838-840)GCT>GCA	p.A280A	PDE4C_uc002nik.3_Silent_p.A280A|PDE4C_uc002nil.3_Silent_p.A280A|PDE4C_uc002nif.3_Silent_p.A49A|PDE4C_uc002nig.3_Silent_p.A50A|PDE4C_uc002nih.3_Silent_p.A50A|PDE4C_uc010ebk.2_Silent_p.A174A|PDE4C_uc002nii.3_Silent_p.A248A|PDE4C_uc010ebl.2_5'UTR|PDE4C_uc010xqd.1_Silent_p.A49A	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	280					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GGGCCTCCTCAGCGGTCACCT	0.652													3	45					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	19	24102082	24102082	+	RNA	SNP	A	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:24102082A>T	uc002nrp.1	-	3		c.1386T>A			uc010eda.1_Intron					Homo sapiens cDNA FLJ43698 fis, clone TCERX2000998.																		AGTTAGAATCAATTCTATTCA	0.318													6	30					0	0	0.001168	0	0
ZNF536	9745	broad.mit.edu	37	19	30935385	30935385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:30935385G>A	uc002nsu.1	+	2	1054	c.916G>A	c.(916-918)GAC>AAC	p.D306N	ZNF536_uc010edd.1_Missense_Mutation_p.D306N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	306	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CACGTTGTGCGACTTCGCGGC	0.642													10	112					0	0	0.013537	0	0
GPI	2821	broad.mit.edu	37	19	34859581	34859581	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:34859581C>T	uc002nvg.1	+	4	479	c.376C>T	c.(376-378)CTG>TTG	p.L126L	GPI_uc002nvf.2_Silent_p.L165L|GPI_uc010xrv.1_Silent_p.L165L|GPI_uc010xrw.1_Silent_p.L126L|GPI_uc010edl.1_Silent_p.L126L|GPI_uc002nvh.1_3'UTR	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	126					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					CAACAAGGTTCTGGACAAGAT	0.577													6	70					0	0	0.001168	0	0
WDR62	284403	broad.mit.edu	37	19	36594428	36594429	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:36594428_36594429CC>TT	uc002odc.2	+	30	3774_3775	c.3683_3684CC>TT	c.(3682-3684)TCC>TTT	p.S1228F	WDR62_uc002odd.2_Missense_Mutation_p.S1233F	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	1228					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CGCAGCATCTCCCTCGGTGACA	0.668													8	67					0	0	0.004672	0	0
PRX	57716	broad.mit.edu	37	19	40902681	40902681	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:40902681C>T	uc002onr.2	-	7	1847	c.1578G>A	c.(1576-1578)TCG>TCA	p.S526S	PRX_uc002onq.2_Silent_p.S387S|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	526	15.|55 X 5 AA approximate tandem repeats of [LVMAG]-[PSREQC]-[EDKL]-[LIVMAP]- [AQKHRPE]; that may have a tripeptide spacer of [LV]-P-[KER].				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GTTTCATCTCCGACACTTTCA	0.562													4	200					0	0	0.001168	0	0
CLPTM1	1209	broad.mit.edu	37	19	45494147	45494147	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:45494147C>T	uc002pai.2	+	11	1378	c.1363C>T	c.(1363-1365)CTA>TTA	p.L455L	CLPTM1_uc010xxf.1_Silent_p.L353L|CLPTM1_uc010xxg.1_Silent_p.L441L	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	455	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		CTTCCCCCGCCTATCCTTCAA	0.582													10	52					0	0	0.013537	0	0
PNMAL2	57469	broad.mit.edu	37	19	46998437	46998438	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:46998437_46998438GG>AA	uc002pes.2	-	1	732_733	c.285_286CC>TT	c.(283-288)GACCGT>GATTGT	p.R96C	uc002peu.1_Missense_Mutation_p.R183Q	NM_020709	NP_065760	Q9ULN7	PNML2_HUMAN	PNMA-like 2	96										central_nervous_system(1)	1		Ovarian(192;0.00965)|all_neural(266;0.0459)		OV - Ovarian serous cystadenocarcinoma(262;0.000322)|all cancers(93;0.00233)|GBM - Glioblastoma multiforme(486;0.0421)|Epithelial(262;0.0427)		TCCTGCGCACGGTCCTTCCACA	0.401													25	174					0	0	0.004672	0	0
LIG1	3978	broad.mit.edu	37	19	48640919	48640919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:48640919C>T	uc002pia.1	-	13	1234	c.1114G>A	c.(1114-1116)GAG>AAG	p.E372K	LIG1_uc010xze.1_Missense_Mutation_p.E65K|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.E304K|LIG1_uc010xzg.1_Missense_Mutation_p.E341K|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	372					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	TCGGCTGCCTCAGCCCGGACG	0.687								NER					4	35					0	0	0.009096	0	0
MYH14	79784	broad.mit.edu	37	19	50792717	50792717	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:50792717C>G	uc002prr.1	+	33	4701	c.4654C>G	c.(4654-4656)CGG>GGG	p.R1552G	MYH14_uc010enu.1_Missense_Mutation_p.R1593G|MYH14_uc002prq.1_Missense_Mutation_p.R1560G|MYH14_uc010ycb.1_5'UTR|MYH14_uc002prs.1_5'UTR	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1552	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		ACGAGCCTGCCGGGTAGCAGA	0.602													6	22					0	0	0.001984	0	0
CD33	945	broad.mit.edu	37	19	51728677	51728677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:51728677G>A	uc002pwa.2	+	2	281	c.241G>A	c.(241-243)GAA>AAA	p.E81K	CD33_uc010eos.1_Missense_Mutation_p.E81K|CD33_uc010eot.1_Intron|CD33_uc010eou.1_5'Flank	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	81	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	GCTAGATCAAGAAGTACAGGA	0.537													14	92					0	0	0.002450	0	0
ZNF836	162962	broad.mit.edu	37	19	52658648	52658648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:52658648G>A	uc010ydi.1	-	5	2662	c.2288C>T	c.(2287-2289)TCG>TTG	p.S763L	ZNF836_uc010ydj.1_Missense_Mutation_p.S763L	NM_001102657	NP_001096127	Q6ZNA1	ZN836_HUMAN	zinc finger protein 836	763	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGCAAGGTTCGAAGTGGAATT	0.423													7	56					0	0	0.001984	0	0
EPS8L1	54869	broad.mit.edu	37	19	55589497	55589497	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:55589497G>A	uc002qis.3	+	3	162	c.58_splice	c.e3+1	p.E20_splice	EPS8L1_uc010ess.1_Intron|EPS8L1_uc010est.1_Splice_Site_p.E20_splice|EPS8L1_uc010yfr.1_Intron|EPS8L1_uc010esu.1_Splice_Site|EPS8L1_uc002qiu.2_5'Flank	NM_133180	NP_573441	Q8TE68	ES8L1_HUMAN	epidermal growth factor receptor pathway							cytoplasm					0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		TCTATCTATGGTGAGCGGGGG	0.388													9	40					0	0	0.008291	0	0
NLRP11	204801	broad.mit.edu	37	19	56300216	56300216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:56300216G>A	uc010ygf.1	-	11	3523	c.2812C>T	c.(2812-2814)CTT>TTT	p.L938F	NLRP11_uc002qlz.2_Missense_Mutation_p.L785F|NLRP11_uc002qmb.2_Missense_Mutation_p.L839F|NLRP11_uc002qmc.2_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	938	LRR 6.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AAGCTCTCAAGAAGTTTTGCA	0.378													5	76					0	0	0.001168	0	0
MYT1L	23040	broad.mit.edu	37	2	1906872	1906873	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:1906872_1906873GA>AT	uc002qxe.2	-	14	2838_2839	c.2011_2012TC>AT	c.(2011-2013)TCC>ATC	p.S671I	MYT1L_uc002qxd.2_Missense_Mutation_p.S669I|MYT1L_uc010ewl.1_Intron	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	671					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCCTTTGGGGGATATATCCCTG	0.431													6	80					0	0	0.004672	0	0
APOB	338	broad.mit.edu	37	2	21251284	21251284	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:21251284G>A	uc002red.2	-	13	1872	c.1744C>T	c.(1744-1746)CCA>TCA	p.P582S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	582	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TGTTCCCATGGTAGAATTTGG	0.413													7	87					0	0	0.003080	0	0
C2orf53	339779	broad.mit.edu	37	2	27360598	27360598	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:27360598C>T	uc002rjb.2	-	3	1180	c.600G>A	c.(598-600)AAG>AAA	p.K200K		NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	200											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTGCAGGATCCTTCTCGCTTG	0.647													4	36					0	0	0.009096	0	0
CCDC121	79635	broad.mit.edu	37	2	27849834	27849834	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:27849834T>G	uc002rle.2	-	2	1014	c.833A>C	c.(832-834)AAG>ACG	p.K278T	ZNF512_uc010yly.1_Intron|CCDC121_uc010eze.2_Missense_Mutation_p.K442T|CCDC121_uc002rld.2_Missense_Mutation_p.K440T|GPN1_uc010ezf.2_5'Flank|GPN1_uc010yma.1_5'Flank|GPN1_uc010ymb.1_5'Flank|GPN1_uc010ymc.1_5'Flank|GPN1_uc010ymd.1_5'Flank|GPN1_uc010yme.1_5'Flank|GPN1_uc010ezg.1_5'Flank	NM_024584	NP_078860	Q6ZUS5	CC121_HUMAN	coiled-coil domain containing 121 isoform 3	278											0	Acute lymphoblastic leukemia(172;0.155)					TAGAAGTTACTTTGGATTAAT	0.398													14	135					0	0	0.002450	0	0
BIRC6	57448	broad.mit.edu	37	2	32740645	32740645	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:32740645G>T	uc010ezu.2	+	55	11291	c.11157G>T	c.(11155-11157)TTG>TTT	p.L3719F		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	3719					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					TGTTTTTATTGTGTCACTCTG	0.423													8	65					1.06961e-07	1.10402e-07	0.003080	1	0
HEATR5B	54497	broad.mit.edu	37	2	37267538	37267538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:37267538C>T	uc002rpp.1	-	20	3076	c.2980G>A	c.(2980-2982)GAA>AAA	p.E994K		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	994							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				TGATGAACTTCTGTATGTGAA	0.413													6	106					0	0	0.001984	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43924387	43924387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:43924387G>A	uc010yny.1	+	7	663	c.580G>A	c.(580-582)GGG>AGG	p.G194R	PLEKHH2_uc002rte.3_Missense_Mutation_p.G194R|PLEKHH2_uc002rtf.3_Missense_Mutation_p.G193R	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	194						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				TTTGACCTTTGGGTGCTTTTT	0.418													6	86					0	0	0.001984	0	0
COMMD1	150684	broad.mit.edu	37	2	62228057	62228057	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:62228057C>T	uc002sbp.2	+	2	413	c.402C>T	c.(400-402)CAC>CAT	p.H134H	COMMD1_uc002sbq.1_RNA	NM_152516	NP_689729	Q8N668	COMD1_HUMAN	MURR1	134	COMM.	Copper (Potential).		H->A: Reduces copper-induced fluorescence change.	copper ion homeostasis|negative regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|regulation of proteasomal ubiquitin-dependent protein catabolic process	cell junction|Cul2-RING ubiquitin ligase complex|cytoplasm|nucleolus	copper ion binding|protein homodimerization activity			ovary(1)	1	Lung NSC(7;0.035)|all_lung(7;0.0691)		LUSC - Lung squamous cell carcinoma(7;4.73e-07)|Epithelial(17;0.0216)|all cancers(80;0.0934)			AGTCAAGGCACTCAGCTCAAA	0.458													6	55					0	0	0.001168	0	0
PROKR1	10887	broad.mit.edu	37	2	68882300	68882300	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:68882300G>A	uc010yqj.1	+	2	774	c.774G>A	c.(772-774)GAG>GAA	p.E258E	PROKR1_uc002ses.2_RNA	NM_138964	NP_620414	Q8TCW9	PKR1_HUMAN	G protein-coupled receptor 73	258	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(1)	1						TCTCCCGGGAGCTCTGGTTCA	0.577													4	43					0	0	0.000602	0	0
ALMS1	7840	broad.mit.edu	37	2	73675893	73675894	+	Missense_Mutation	DNP	CC	TT	TT	rs140940799		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:73675893_73675894CC>TT	uc002sje.1	+	10	2353_2354	c.2242_2243CC>TT	c.(2242-2244)CCT>TTT	p.P748F	ALMS1_uc002sjf.1_Missense_Mutation_p.P704F|ALMS1_uc002sjg.2_Missense_Mutation_p.P134F|ALMS1_uc002sjh.1_Missense_Mutation_p.P134F	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	746	5.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole		p.P746L(1)		skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						TTCAGCCACTCCTGGACCAGCT	0.441													6	153					0	0	0.004672	0	0
EIF2AK3	9451	broad.mit.edu	37	2	88890435	88890435	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:88890435C>A	uc002stc.3	-	5	1105	c.903G>T	c.(901-903)CAG>CAT	p.Q301H		NM_004836	NP_004827	Q9NZJ5	E2AK3_HUMAN	eukaryotic translation initiation factor 2-alpha	301	Lumenal (Potential).				activation of caspase activity|bone mineralization|calcium-mediated signaling|chondrocyte development|endocrine pancreas development|endoplasmic reticulum organization|endoplasmic reticulum unfolded protein response|ER overload response|insulin secretion|insulin-like growth factor receptor signaling pathway|negative regulation of myelination|negative regulation of translational initiation in response to stress|protein autophosphorylation|protein homooligomerization	endoplasmic reticulum membrane|integral to membrane	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|identical protein binding			ovary(3)	3						TGGCAGCTTCCTGTTCTTCCA	0.423													7	100					1.12685e-05	1.1569e-05	0.004482	1	0
Unknown	0	broad.mit.edu	37	2	89442597	89442597	+	RNA	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:89442597C>T	uc010ytr.1	-	32		c.4007G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TCCATGGTTCCCTCTGGGTCC	0.572													4	84					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	2	90121970	90121970	+	RNA	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:90121970G>A	uc010fhm.2	+	16		c.1839G>A								Parts of antibodies, mostly variable regions.																		CAGAAACCAGGGAAAGTCCCT	0.512													10	126					0	0	0.008291	0	0
RGPD3	653489	broad.mit.edu	37	2	107041192	107041192	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:107041192C>T	uc010ywi.1	-	20	3288	c.3231G>A	c.(3229-3231)TGG>TGA	p.W1077*		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1077	RanBD1 1.				intracellular transport		binding			ovary(1)	1						CCCTTTCTTTCCACTGACTTA	0.383													27	458					0	0	0.003755	0	0
NPHP1	4867	broad.mit.edu	37	2	110936067	110936067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:110936067G>A	uc002tfn.3	-	4	356	c.262C>T	c.(262-264)CTT>TTT	p.L88F	NPHP1_uc002tfm.3_Missense_Mutation_p.L88F|NPHP1_uc002tfl.3_Missense_Mutation_p.L88F|NPHP1_uc002tfo.3_Intron|NPHP1_uc010ywx.1_Missense_Mutation_p.L88F|NPHP1_uc010fjv.1_Missense_Mutation_p.L88F|NPHP1_uc002tfp.2_Missense_Mutation_p.L88F	NM_207181	NP_997064	O15259	NPHP1_HUMAN	nephrocystin 1 isoform 2	88	Potential.				actin cytoskeleton organization|cell projection organization|cell-cell adhesion|excretion|retina development in camera-type eye|signal transduction|spermatid differentiation|visual behavior	adherens junction|cell-cell junction|cilium axoneme|cytoplasm|cytoskeleton|motile cilium|photoreceptor connecting cilium	protein binding|structural molecule activity			ovary(2)	2						TTGTCCAAAAGAGTATGCTCC	0.358													6	62					0	0	0.001984	0	0
DPP10	57628	broad.mit.edu	37	2	116283490	116283490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:116283490C>T	uc002tla.1	+	5	840	c.383C>T	c.(382-384)TCA>TTA	p.S128L	DPP10_uc002tlb.1_Missense_Mutation_p.S78L|DPP10_uc002tlc.1_Missense_Mutation_p.S124L|DPP10_uc002tle.2_Missense_Mutation_p.S132L|DPP10_uc002tlf.1_Missense_Mutation_p.S121L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	128	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						TTCAAAGCATCAAGACATTCA	0.279													4	23					0	0	0.009096	0	0
GYPC	2995	broad.mit.edu	37	2	127453655	127453655	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:127453655C>T	uc002tnq.2	+	4	480	c.324C>T	c.(322-324)GCC>GCT	p.A108A	GYPC_uc002tnr.2_Silent_p.A89A|GYPC_uc010flv.2_RNA	NM_002101	NP_002092	P04921	GLPC_HUMAN	glycophorin C isoform 1	108	Cytoplasmic.					cortical cytoskeleton|integral to plasma membrane	protein binding			central_nervous_system(1)	1	Colorectal(110;0.0533)			BRCA - Breast invasive adenocarcinoma(221;0.075)		CAGATGCAGCCCTGCAGGGAG	0.562													7	60					0	0	0.001984	0	0
MBD5	55777	broad.mit.edu	37	2	149227047	149227048	+	Missense_Mutation	DNP	CC	TT	TT	rs147908860		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:149227047_149227048CC>TT	uc002twm.3	+	9	2523_2524	c.1535_1536CC>TT	c.(1534-1536)TCC>TTT	p.S512F	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.S512F|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	512						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		TCTACCAAGTCCGATGGACATC	0.475													5	59					0	0	0.004672	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711304	155711304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:155711304C>T	uc002tyv.1	+	3	1180	c.985C>T	c.(985-987)CCT>TCT	p.P329S	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	329	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	TCGTTTTTTTCCTGTAATTTC	0.388													4	52					0	0	0.009096	0	0
GPR155	151556	broad.mit.edu	37	2	175346399	175346399	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:175346399A>C	uc002uit.2	-	3	677	c.286T>G	c.(286-288)TCC>GCC	p.S96A	GPR155_uc002uiu.2_Missense_Mutation_p.S96A|GPR155_uc002uiv.2_Missense_Mutation_p.S96A|GPR155_uc010fqs.2_Missense_Mutation_p.S96A	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	96	Helical; (Potential).				intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						TCCACATTGGAAAAATTAAGT	0.358													7	117					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179611814	179611814	+	Silent	SNP	G	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:179611814G>T	uc002unb.2	-	46	15537	c.15313C>A	c.(15313-15315)CGA>AGA	p.R5105R	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGGAATATCGCTCTAGAGTC	0.493													3	89					0.00024832	0.000254264	0.009096	1	0
COL3A1	1281	broad.mit.edu	37	2	189858774	189858774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:189858774G>A	uc002uqj.1	+	17	1277	c.1160G>A	c.(1159-1161)GGG>GAG	p.G387E	COL3A1_uc010frw.1_RNA	NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	387	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGCCCTCCTGGGATTAATGGT	0.373													5	42					0	0	0.001984	0	0
COL4A4	1286	broad.mit.edu	37	2	227920757	227920757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:227920757G>A	uc010zlt.1	-	30	3274	c.2620C>T	c.(2620-2622)CTC>TTC	p.L874F		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	874	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CGTCCTGGGAGTCCGGGGAGG	0.632													6	33					0	0	0.001168	0	0
AGXT	189	broad.mit.edu	37	2	241808436	241808436	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr2:241808436G>A	uc002waa.3	+	1	275	c.154G>A	c.(154-156)GAT>AAT	p.D52N	AGXT_uc010zoi.1_Missense_Mutation_p.D52N	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	52					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	CATGAGCAAGGATATGTACCA	0.642													4	85					0	0	0.000602	0	0
DEFB125	245938	broad.mit.edu	37	20	76694	76694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:76694G>A	uc002wcw.2	+	2	107	c.107G>A	c.(106-108)AGA>AAA	p.R36K		NM_153325	NP_697020	Q8N687	DB125_HUMAN	defensin, beta 125 preproprotein	36					defense response to bacterium	extracellular region				ovary(1)|central_nervous_system(1)|skin(1)	3		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.156)			GGACATTGCAGAAGACGATGT	0.348													13	108					0	0	0.002450	0	0
TMC2	117532	broad.mit.edu	37	20	2575520	2575520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:2575520G>A	uc002wgf.1	+	9	998	c.983G>A	c.(982-984)AGG>AAG	p.R328K	TMC2_uc002wgg.1_Missense_Mutation_p.R312K|TMC2_uc010zpw.1_Missense_Mutation_p.R160K|TMC2_uc010zpx.1_Missense_Mutation_p.R159K	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	328	Extracellular (Potential).					integral to membrane				ovary(3)	3						AACAACCAGAGGACCATCGGG	0.517													11	75					0	0	0.008291	0	0
CD93	22918	broad.mit.edu	37	20	23066584	23066584	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:23066584C>T	uc002wsv.2	-	1	394	c.246G>A	c.(244-246)CGG>CGA	p.R82R		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	82	Extracellular (Potential).|C-type lectin.				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GGGCTGCCTCCCGCCTCAGGA	0.637													5	12					0	0	0.001168	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32232248	32232248	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:32232248G>A	uc002wzg.1	+	12	2148	c.1611G>A	c.(1609-1611)GAG>GAA	p.E537E	CBFA2T2_uc010zug.1_Silent_p.E311E|CBFA2T2_uc002wze.1_Silent_p.E528E|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Silent_p.E508E|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA|CBFA2T2_uc002wzk.1_Silent_p.E85E	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	537	MYND-type.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						AGGACTGGGAGCGGCACCACC	0.647													19	85					0	0	0.012319	0	0
UQCC	55245	broad.mit.edu	37	20	33961986	33961986	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:33961986C>T	uc002xcd.2	-	5	473	c.406_splice	c.e5+1	p.R136_splice	UQCC_uc010zuy.1_Splice_Site_p.R37_splice|UQCC_uc010zuz.1_Intron|UQCC_uc010zva.1_Intron|UQCC_uc002xce.2_Intron|UQCC_uc002xcg.2_Intron|UQCC_uc010gfb.2_Splice_Site_p.R136_splice|UQCC_uc010zvb.1_Splice_Site_p.R68_splice|UQCC_uc002xcf.2_Intron|GDF5_uc010gfc.1_Intron|UQCC_uc002xci.1_Splice_Site_p.R90_splice|UQCC_uc010gfd.1_Splice_Site_p.R122_splice	NM_018244	NP_060714	Q9NVA1	UQCC_HUMAN	basic FGF-repressed Zic binding protein isoform							cytoplasmic membrane-bounded vesicle				breast(1)	1			BRCA - Breast invasive adenocarcinoma(18;0.00252)			CAATAACTTACTTAGAAAGAA	0.343													4	84					0	0	0.009096	0	0
RBM12	10137	broad.mit.edu	37	20	34242197	34242197	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:34242197A>C	uc002xdq.2	-	3	1280	c.1048T>G	c.(1048-1050)TTT>GTT	p.F350V	CPNE1_uc010zvj.1_5'Flank|CPNE1_uc002xde.2_Intron|CPNE1_uc002xdf.2_Intron|CPNE1_uc002xdg.2_Intron|CPNE1_uc010gfi.2_Intron|CPNE1_uc010gfj.2_Intron|CPNE1_uc002xdh.2_Intron|CPNE1_uc002xdi.2_Intron|CPNE1_uc002xdj.2_Intron|CPNE1_uc002xdk.2_Intron|CPNE1_uc002xdl.2_Intron|CPNE1_uc002xdm.2_Intron|CPNE1_uc010gfk.1_Intron|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_Intron|RBM12_uc002xdr.2_Missense_Mutation_p.F350V|RBM12_uc002xds.2_Missense_Mutation_p.F350V	NM_152838	NP_690051	Q9NTZ6	RBM12_HUMAN	RNA binding motif protein 12	350	RRM 1.					nucleus	nucleotide binding|protein binding|RNA binding			ovary(3)	3	Lung NSC(9;0.00608)|all_lung(11;0.00918)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			GGGGAGAGAAACTTAACCAAT	0.413											OREG0004044	type=REGULATORY REGION|Gene=CPNE1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	26	139					0	0	0.008361	0	0
PLCG1	5335	broad.mit.edu	37	20	39792068	39792068	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:39792068C>T	uc002xjp.1	+	9	961	c.840C>T	c.(838-840)TTC>TTT	p.F280F	PLCG1_uc002xjo.1_Silent_p.F280F|PLCG1_uc010zwe.1_5'Flank|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	280					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				TGCTCAGCTTCCTCCGAGACC	0.557													4	53					0	0	0.003080	0	0
PHACTR3	116154	broad.mit.edu	37	20	58416519	58416519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:58416519G>A	uc002yau.2	+	11	1983	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K	PHACTR3_uc002yat.2_Missense_Mutation_p.E503K|PHACTR3_uc010zzw.1_Missense_Mutation_p.E465K|PHACTR3_uc002yav.2_Missense_Mutation_p.E465K|PHACTR3_uc002yaw.2_Missense_Mutation_p.E465K|PHACTR3_uc002yax.2_Missense_Mutation_p.E395K|PHACTR3_uc002yay.2_Missense_Mutation_p.E75K	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	506	Required for PP1CA binding and inhibition of PP1 activity.					nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			TGATTACGTGGAAGTAGCAAA	0.438													13	46					0	0	0.003163	0	0
SRMS	6725	broad.mit.edu	37	20	62174757	62174757	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr20:62174757C>T	uc002yfi.1	-	3	596	c.555G>A	c.(553-555)CGG>CGA	p.R185R		NM_080823	NP_543013	Q9H3Y6	SRMS_HUMAN	src-related kinase lacking C-terminal regulatory	185	SH2.						ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(1)|lung(1)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;9.69e-09)|all cancers(9;5.84e-08)|BRCA - Breast invasive adenocarcinoma(10;3.63e-06)			CGGGAAAGAGCCGTCCCTTCT	0.627													11	66					0	0	0.001855	0	0
PRDM15	63977	broad.mit.edu	37	21	43291606	43291606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr21:43291606G>A	uc002yzq.1	-	4	649	c.538C>T	c.(538-540)CCT>TCT	p.P180S	PRDM15_uc002yzo.2_Intron|PRDM15_uc002yzp.2_Intron|PRDM15_uc002yzr.1_Intron	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	180					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AGCCCACCAGGAGGTAGGGCA	0.582													8	82					0	0	0.004482	0	0
KRTAP10-12	386685	broad.mit.edu	37	21	46117232	46117233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr21:46117232_46117233CC>TT	uc002zfw.1	+	1	146_147	c.116_117CC>TT	c.(115-117)CCC>CTT	p.P39L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198699	NP_941972	P60413	KR10C_HUMAN	keratin associated protein 10-12	39	1.|19 X 5 AA repeats of C-C-X(3).					keratin filament					0						TGCTGTGAGCCCCCCTGCTGCG	0.683													18	119					0	0	0.004672	0	0
GAB4	128954	broad.mit.edu	37	22	17445656	17445656	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:17445656C>T	uc002zlw.2	-	8	1584	c.1476G>A	c.(1474-1476)CCG>CCA	p.P492P		NM_001037814	NP_001032903	Q2WGN9	GAB4_HUMAN	GRB2-associated binding protein family, member	492										large_intestine(1)|ovary(1)	2		all_epithelial(15;0.112)|Lung NSC(13;0.248)				AAGGACTCACCGGGAAAAGAT	0.572													5	40					0	0	0.001984	0	0
CECR1	51816	broad.mit.edu	37	22	17690466	17690466	+	Silent	SNP	C	T	T	rs113192455		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:17690466C>T	uc002zmk.1	-	1	314	c.102G>A	c.(100-102)CGG>CGA	p.R34R	CECR1_uc010gqu.1_Silent_p.R34R|CECR1_uc011agi.1_5'UTR|CECR1_uc011agj.1_5'UTR	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	34	Dimerization.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				ACAGATGCGCCCGTGTTTCAT	0.552													8	46					0	0	0.003080	0	0
ZDHHC8	29801	broad.mit.edu	37	22	20128799	20128800	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:20128799_20128800CC>TT	uc002zrq.2	+	8	1060_1061	c.954_955CC>TT	c.(952-957)CCCCCC>CCTTCC	p.P319S	ZDHHC8_uc002zrr.1_Missense_Mutation_p.P319S|ZDHHC8_uc010gsa.2_Missense_Mutation_p.P125S	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	319	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					CACCACTGCCCCCCAAGATAGA	0.649													5	36					0	0	0.004672	0	0
VPREB1	7441	broad.mit.edu	37	22	22599458	22599458	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:22599458C>T	uc002zvx.1	+	2	173	c.147C>T	c.(145-147)ATC>ATT	p.I49I	LOC96610_uc011aim.1_Intron	NM_007128	NP_009059	P12018	VPREB_HUMAN	immunoglobulin iota chain precursor	49	Ig-like V-type.|Complementarity-determining-1.				immune response	extracellular region	antigen binding|protein binding				0	all_hematologic(9;0.0312)|Acute lymphoblastic leukemia(84;0.155)	all_cancers(3;3.14e-14)|Acute lymphoblastic leukemia(3;2.97e-57)|all_hematologic(3;5.9e-52)		READ - Rectum adenocarcinoma(21;0.145)		ACCATGACATCGGTGTGTACA	0.617													19	109					0	0	0.014323	0	0
MTMR3	8897	broad.mit.edu	37	22	30403950	30403950	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:30403950T>G	uc003agv.3	+	11	1266	c.938T>G	c.(937-939)TTG>TGG	p.L313W	MTMR3_uc003agu.3_Missense_Mutation_p.L313W|MTMR3_uc003agw.3_Missense_Mutation_p.L313W	NM_021090	NP_066576	Q13615	MTMR3_HUMAN	myotubularin-related protein 3 isoform c	313	Myotubularin phosphatase.				phosphatidylinositol dephosphorylation	cytoplasm|membrane|membrane fraction|nucleus	metal ion binding|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity			breast(3)|ovary(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(5;0.00204)|Epithelial(10;0.06)|all cancers(5;0.107)			CAGAAGCTTTTGATCTTGGAT	0.517													5	37					0	0	0.001168	0	0
SFI1	9814	broad.mit.edu	37	22	32009698	32009698	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:32009698G>A	uc003ale.2	+	27	3246	c.2853G>A	c.(2851-2853)AGG>AGA	p.R951R	SFI1_uc003alf.2_Silent_p.R920R|SFI1_uc003alg.2_Silent_p.R869R|SFI1_uc011alp.1_Silent_p.R857R|SFI1_uc011alq.1_Silent_p.R896R|SFI1_uc003alh.2_RNA|SFI1_uc010gwi.2_RNA|SFI1_uc003ali.2_5'Flank|SFI1_uc003alj.2_5'Flank	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	951					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						CACCCAGCAGGAAAGTGACGT	0.652											OREG0003527	type=REGULATORY REGION|Gene=SFI1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	5	18					0	0	0.003080	0	0
PHF21B	112885	broad.mit.edu	37	22	45278977	45278978	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:45278977_45278978CC>TT	uc003bfn.2	-	13	1735_1736	c.1584_1585GG>AA	c.(1582-1587)CAGGGC>CAAAGC	p.G529S	PHF21B_uc003bfm.2_Missense_Mutation_p.G325S|PHF21B_uc011aqk.1_Missense_Mutation_p.G475S|PHF21B_uc011aql.1_Missense_Mutation_p.G487S	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	529							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		CAGTTGTGGCCCTGGGGGTGCT	0.614													20	172					0	0	0.004672	0	0
SMC1B	27127	broad.mit.edu	37	22	45798252	45798252	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:45798252A>C	uc003bgc.2	-	5	867	c.815T>G	c.(814-816)ATG>AGG	p.M272R	SMC1B_uc003bgd.2_Missense_Mutation_p.M272R|SMC1B_uc003bge.1_Missense_Mutation_p.M55R	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	272	Potential.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TCTAGTTAGCATTCCATGTTC	0.328													5	65					0	0	0.000602	0	0
LRRN1	57633	broad.mit.edu	37	3	3886713	3886713	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:3886713C>T	uc003bpt.3	+	2	1149	c.388C>T	c.(388-390)CAG>TAG	p.Q130*	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	130	LRR 3.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		GGAGGAAAATCAGATTACCGA	0.423													5	66					0	0	0.000602	0	0
SLC6A11	6538	broad.mit.edu	37	3	10967784	10967784	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:10967784C>T	uc003bvz.2	+	9	1249	c.1215C>T	c.(1213-1215)TTC>TTT	p.F405F		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	405	Helical; Name=8; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		TGCTCATCTTCCTGGGCCTGG	0.657													17	171					0	0	0.007413	0	0
SCN10A	6336	broad.mit.edu	37	3	38783809	38783809	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:38783809G>A	uc003ciq.2	-	13	2079	c.2079C>T	c.(2077-2079)TTC>TTT	p.F693F		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	693	II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GCATGGCTTCGAAGGTAGGGC	0.592													5	59					0	0	0.000602	0	0
SCN11A	11280	broad.mit.edu	37	3	38936084	38936084	+	Missense_Mutation	SNP	G	T	T	rs140576269	by1000genomes	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:38936084G>T	uc011ays.1	-	15	2974	c.2775C>A	c.(2773-2775)GAC>GAA	p.D925E	SCN11A_uc010hhn.1_Missense_Mutation_p.D41E	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	925					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AAAATTCAACGTCATCTTCCT	0.483													37	166					3.61848e-18	3.76517e-18	0.007835	1	0
COL7A1	1294	broad.mit.edu	37	3	48604435	48604435	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:48604435A>G	uc003ctz.2	-	110	8132	c.8131T>C	c.(8131-8133)TTC>CTC	p.F2711L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2711	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGCCTGGGAAGCCCCCAATT	0.602													6	23					0	0	0.004482	0	0
ERC2	26059	broad.mit.edu	37	3	55984490	55984490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:55984490C>T	uc003dhr.1	-	13	2622	c.2366G>A	c.(2365-2367)CGA>CAA	p.R789Q	ERC2_uc003dhq.1_RNA|ERC2_uc003dht.1_Missense_Mutation_p.R268Q	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	789	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCTGTCTTCTCGCCTGCGCAC	0.428													3	45					0	0	0.004672	0	0
FLNB	2317	broad.mit.edu	37	3	58064483	58064483	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:58064483C>T	uc003djj.2	+	3	746	c.581C>T	c.(580-582)CCT>CTT	p.P194L	FLNB_uc010hne.2_Missense_Mutation_p.P194L|FLNB_uc003djk.2_Missense_Mutation_p.P194L|FLNB_uc010hnf.2_Missense_Mutation_p.P194L|FLNB_uc003djl.2_Missense_Mutation_p.P25L|FLNB_uc003djm.2_Missense_Mutation_p.P25L	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	194	CH 2.|Actin-binding.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCGCAGAAGCCTGTGGATAAT	0.532													6	30					0	0	0.003080	0	0
KBTBD8	84541	broad.mit.edu	37	3	67054126	67054126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:67054126G>A	uc003dmy.2	+	3	788	c.735G>A	c.(733-735)ATG>ATA	p.M245I	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	245	BACK.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		TTCCTCTGATGGAAGATACCT	0.393													7	87					0	0	0.001984	0	0
UBA3	9039	broad.mit.edu	37	3	69127023	69127023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:69127023G>A	uc003dno.2	-	3	129	c.109C>T	c.(109-111)CGC>TGC	p.R37C	UBA3_uc003dnq.2_Missense_Mutation_p.R23C|UBA3_uc011bfy.1_5'UTR|UBA3_uc011bfz.1_5'UTR	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	37					protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		TGGTTCCAGCGACCTTCCCAG	0.458													39	195					0	0	0.013114	0	0
CNTN3	5067	broad.mit.edu	37	3	74347318	74347318	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:74347318C>T	uc003dpm.1	-	17	2271	c.2191G>A	c.(2191-2193)GGT>AGT	p.G731S		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	731	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		AAACCTTCACCATTCTGTAGT	0.468													6	53					0	0	0.003080	0	0
ZBED2	79413	broad.mit.edu	37	3	111312619	111312619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:111312619C>T	uc003dxy.2	-	2	1315	c.430G>A	c.(430-432)GAG>AAG	p.E144K	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	144							DNA binding|metal ion binding			skin(1)	1						CCCACCTGCTCCAGGAGCCTA	0.627													8	61					0	0	0.004482	0	0
MCM2	4171	broad.mit.edu	37	3	127325561	127325561	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:127325561C>T	uc003ejp.2	+	6	1059	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	MCM2_uc011bkm.1_Silent_p.F204F|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Silent_p.F218F	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	334	C4-type (Potential).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						AGTGCAATTTCGTCCTGGGTC	0.592													15	112					0	0	0.007413	0	0
KBTBD12	166348	broad.mit.edu	37	3	127642062	127642062	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:127642062G>T	uc010hsr.2	+	1	161	c.158G>T	c.(157-159)AGC>ATC	p.S53I	KBTBD12_uc003ejy.3_Intron|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_5'Flank|KBTBD12_uc003ejz.2_Missense_Mutation_p.S53I	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	53	BTB.									ovary(1)	1						GCTGCATTTAGCCCTTATTTC	0.393													3	49					0.00909568	0.00926412	0.009096	1	0
PIK3CA	5290	broad.mit.edu	37	3	178922366	178922366	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:178922366T>A	uc003fjk.2	+	6	1292	c.1135T>A	c.(1135-1137)TCC>ACC	p.S379T		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	379	C2 PI3K-type.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AGTACCTTGTTCCAATCCCAG	0.308		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			16	94					0	0	0.012319	0	0
ADIPOQ	9370	broad.mit.edu	37	3	186572328	186572328	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:186572328G>A	uc003fra.2	+	3	654	c.570G>A	c.(568-570)CAG>CAA	p.Q190Q	ADIPOQ_uc010hyy.2_Silent_p.Q190Q	NM_004797	NP_004788	Q15848	ADIPO_HUMAN	adiponectin precursor	190	C1q.				brown fat cell differentiation|cellular response to drug|cellular response to insulin stimulus|detection of oxidative stress|fatty acid beta-oxidation|generation of precursor metabolites and energy|glucose homeostasis|glucose metabolic process|low-density lipoprotein particle clearance|negative regulation of blood pressure|negative regulation of DNA biosynthetic process|negative regulation of ERK1 and ERK2 cascade|negative regulation of eukaryotic cell surface binding|negative regulation of fat cell differentiation|negative regulation of gluconeogenesis|negative regulation of granulocyte differentiation|negative regulation of heterotypic cell-cell adhesion|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of inflammatory response|negative regulation of intracellular protein transport|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|negative regulation of macrophage differentiation|negative regulation of MAP kinase activity|negative regulation of phagocytosis|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein autophosphorylation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell proliferation|negative regulation of synaptic transmission|negative regulation of transcription, DNA-dependent|negative regulation of tumor necrosis factor production|negative regulation of tumor necrosis factor-mediated signaling pathway|positive regulation of cAMP-dependent protein kinase activity|positive regulation of cholesterol efflux|positive regulation of fatty acid metabolic process|positive regulation of glucose import|positive regulation of glycogen (starch) synthase activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-8 production|positive regulation of metanephric glomerular visceral epithelial cell development|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myeloid cell apoptosis|positive regulation of protein kinase A signaling cascade|positive regulation of renal albumin absorption|protein homooligomerization|protein localization in plasma membrane|response to glucose stimulus|response to tumor necrosis factor	collagen|endoplasmic reticulum|extracellular space	cytokine activity|eukaryotic cell surface binding|hormone activity|protein homodimerization activity			ovary(1)	1	all_cancers(143;1.2e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.47e-19)	GBM - Glioblastoma multiforme(93;0.0776)		ATCAGTACCAGGAAAATAATG	0.512													12	83					0	0	0.013537	0	0
CPN2	1370	broad.mit.edu	37	3	194061987	194061987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr3:194061987G>A	uc003fts.2	-	2	1535	c.1445C>T	c.(1444-1446)ACC>ATC	p.T482I		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	482					protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		GTTGCTGTAGGTGCACTGGCT	0.672													13	81					0	0	0.001855	0	0
PIGG	54872	broad.mit.edu	37	4	517460	517460	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:517460C>T	uc003gak.3	+	9	1963	c.1827C>T	c.(1825-1827)CTC>CTT	p.L609L	PIGG_uc003gaj.3_Silent_p.L601L|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.L476L|PIGG_uc003gal.3_Silent_p.L520L	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	609					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CGTGTGGCCTCTGTGTGGAAC	0.582													7	78					0	0	0.004482	0	0
POLN	353497	broad.mit.edu	37	4	2181115	2181115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:2181115C>T	uc003ger.2	-	6	1099	c.1099G>A	c.(1099-1101)GAT>AAT	p.D367N	POLN_uc010ich.1_Intron|POLN_uc011bvi.1_Missense_Mutation_p.D367N	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	367					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			TCTACTAAATCTTCAAAAGAG	0.358								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					5	57					0	0	0.001168	0	0
HS3ST1	9957	broad.mit.edu	37	4	11401324	11401324	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:11401324C>T	uc003gmq.2	-	2	629	c.306G>A	c.(304-306)TGG>TGA	p.W102*		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	102						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						GGCTGAGGTACCAGCCCAAGC	0.622													12	111					0	0	0.004007	0	0
BOD1L	259282	broad.mit.edu	37	4	13603494	13603494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:13603494G>A	uc003gmz.1	-	10	5147	c.5030C>T	c.(5029-5031)ACT>ATT	p.T1677I	BOD1L_uc010idr.1_Missense_Mutation_p.T1014I	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	1677							DNA binding			ovary(5)|breast(1)	6						AAAAGTAATAGTTCCTTCAAC	0.413													7	230					0	0	0.004482	0	0
C1QTNF7	114905	broad.mit.edu	37	4	15444216	15444216	+	Silent	SNP	C	T	T	rs140722077	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:15444216C>T	uc011bxb.1	+	3	890	c.663C>T	c.(661-663)TTC>TTT	p.F221F	C1QTNF7_uc003gno.2_Silent_p.F228F|C1QTNF7_uc003gnp.2_Silent_p.F221F	NM_001135171	NP_001128643	Q9BXJ2	C1QT7_HUMAN	C1q and tumor necrosis factor related protein 7	221	C1q.					collagen					0						TAAAGACCTTCGACGCCAACA	0.463													6	121					0	0	0.004482	0	0
TLR1	7096	broad.mit.edu	37	4	38798510	38798510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:38798510G>A	uc003gtl.2	-	4	2217	c.1943C>T	c.(1942-1944)TCT>TTT	p.S648F		NM_003263	NP_003254	Q15399	TLR1_HUMAN	toll-like receptor 1 precursor	648	Cytoplasmic (Potential).|TIR.				cellular response to triacyl bacterial lipopeptide|detection of triacyl bacterial lipopeptide|inflammatory response|innate immune response|macrophage activation|positive regulation of interleukin-6 biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	integral to plasma membrane|phagocytic vesicle membrane|Toll-like receptor 1-Toll-like receptor 2 protein complex	protein heterodimerization activity|transmembrane receptor activity			lung(2)|skin(2)|prostate(1)	5						CACCCAGAAAGAATCGTGCCC	0.443													14	96					0	0	0.003163	0	0
UGDH	7358	broad.mit.edu	37	4	39507238	39507238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:39507238C>T	uc003guk.1	-	8	1353	c.1037G>A	c.(1036-1038)AGA>AAA	p.R346K	UGDH_uc011byp.1_Missense_Mutation_p.R249K|UGDH_uc003gul.1_Missense_Mutation_p.R279K	NM_003359	NP_003350	O60701	UGDH_HUMAN	UDP-glucose dehydrogenase	346		NAD.			glycosaminoglycan biosynthetic process|UDP-glucose metabolic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	cytosol	electron carrier activity|NAD binding|UDP-glucose 6-dehydrogenase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4					NADH(DB00157)	AAACTGATACCTTGTATCACC	0.303													25	148					0	0	0.009535	0	0
NIPAL1	152519	broad.mit.edu	37	4	48036946	48036946	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:48036946G>A	uc003gxw.2	+	5	576	c.510G>A	c.(508-510)GGG>GGA	p.G170G		NM_207330	NP_997213	Q6NVV3	NIPA3_HUMAN	NIPA-like domain containing 1	170	Helical; (Potential).					integral to membrane					0						ACATTCATGGGAAAATAGGCT	0.353													6	63					0	0	0.001984	0	0
FRYL	285527	broad.mit.edu	37	4	48503669	48503670	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:48503669_48503670GG>AA	uc003gyh.1	-	62	9167_9168	c.8562_8563CC>TT	c.(8560-8565)AACCAA>AATTAA	p.Q2855*	FRYL_uc003gye.1_Nonsense_Mutation_p.Q37*|FRYL_uc003gyf.1_Nonsense_Mutation_p.Q245*|FRYL_uc003gyg.1_Nonsense_Mutation_p.Q1545*	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2855					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						GTATTTACTTGGTTGATAAGTT	0.297													21	159					0	0	0.004672	0	0
SULT1B1	27284	broad.mit.edu	37	4	70620463	70620463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:70620463C>T	uc003hen.2	-	3	500	c.202G>A	c.(202-204)GAA>AAA	p.E68K		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	68					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						TTACATTTTTCAATATCTCCA	0.333													13	106					0	0	0.001855	0	0
AFP	174	broad.mit.edu	37	4	74313303	74313303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:74313303C>T	uc003hgz.1	+	8	1015	c.968C>T	c.(967-969)CCT>CTT	p.P323L	AFP_uc003hha.1_Missense_Mutation_p.P323L|AFP_uc011cbg.1_Missense_Mutation_p.P97L	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	323	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			GATGAAAAACCTGAAGGTCTA	0.363									Alpha-Fetoprotein_Hereditary_Persistence_of				3	43					0	0	0.009096	0	0
SHROOM3	57619	broad.mit.edu	37	4	77691817	77691817	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:77691817C>T	uc011cbx.1	+	10	6341	c.5388C>T	c.(5386-5388)ACC>ACT	p.T1796T	SHROOM3_uc003hkg.2_Silent_p.T1574T	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1796	ASD2.				apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			AGCTGGAGACCCTCCAGGAGG	0.567													3	46					0	0	0.004672	0	0
C4orf37	285555	broad.mit.edu	37	4	98762037	98762037	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:98762037A>G	uc003htt.1	-	9	1181	c.1091T>C	c.(1090-1092)ATG>ACG	p.M364T		NM_174952	NP_777612	Q8N412	CD037_HUMAN	hypothetical protein LOC285555	364											0				OV - Ovarian serous cystadenocarcinoma(123;2.27e-08)		AACTTGGGACATCTCATATGA	0.358													5	75					0	0	0.001984	0	0
DNAJB14	79982	broad.mit.edu	37	4	100851674	100851674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:100851674C>T	uc003hvl.2	-	2	389	c.238G>A	c.(238-240)GAC>AAC	p.D80N	DNAJB14_uc003hvk.2_5'UTR|DNAJB14_uc010ili.2_Intron|DNAJB14_uc003hvm.2_Missense_Mutation_p.D80N	NM_001031723	NP_001026893	Q8TBM8	DJB14_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 14	80					protein folding	integral to membrane	heat shock protein binding|unfolded protein binding				0				OV - Ovarian serous cystadenocarcinoma(123;4.59e-09)		GATGTGCTGTCCTTTGTGCAA	0.413													9	243					0	0	0.008291	0	0
PDE5A	8654	broad.mit.edu	37	4	120463730	120463730	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:120463730G>A	uc003idh.2	-	10	1611	c.1456C>T	c.(1456-1458)CGA>TGA	p.R486*	uc003ide.3_Intron|PDE5A_uc003idf.2_Nonsense_Mutation_p.R444*|PDE5A_uc003idg.2_Nonsense_Mutation_p.R434*|uc003idi.3_Intron	NM_001083	NP_001074	O76074	PDE5A_HUMAN	phosphodiesterase 5A isoform 1	486	GAF 2.				platelet activation|signal transduction	cytosol	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|zinc ion binding				0					Dipyridamole(DB00975)|Pentoxifylline(DB00806)|Sildenafil(DB00203)|Tadalafil(DB00820)|Theophylline(DB00277)|Vardenafil(DB00862)	TCGTCATTTCGGTTGAAAGGC	0.428													5	68					0	0	0.000602	0	0
FAT4	79633	broad.mit.edu	37	4	126370225	126370225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:126370225G>A	uc003ifj.3	+	9	8054	c.8054G>A	c.(8053-8055)CGA>CAA	p.R2685Q	FAT4_uc011cgp.1_Missense_Mutation_p.R983Q|FAT4_uc003ifi.1_Missense_Mutation_p.R163Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2685	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTTTCCCCTCGAAAAATACTT	0.348													22	168					0	0	0.004656	0	0
KIAA0922	23240	broad.mit.edu	37	4	154533475	154533475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:154533475C>T	uc003inm.3	+	26	3539	c.3487C>T	c.(3487-3489)CCT>TCT	p.P1163S	KIAA0922_uc010ipp.2_Missense_Mutation_p.P1164S|KIAA0922_uc010ipq.2_Missense_Mutation_p.P932S	NM_015196	NP_056011	A2VDJ0	T131L_HUMAN	hypothetical protein LOC23240 isoform 2	1163	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				GGACACAAAGCCTTCTTCAGA	0.338													7	42					0	0	0.001984	0	0
GALNTL6	442117	broad.mit.edu	37	4	173730626	173730626	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr4:173730626C>G	uc003isv.2	+	6	1404	c.668C>G	c.(667-669)GCC>GGC	p.A223G		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	223	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GCATCTATGGCCAGAGGAGAA	0.527													9	54					0	0	0.006214	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5239964	5239964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:5239964G>A	uc003jdl.2	+	16	2587	c.2449G>A	c.(2449-2451)GAC>AAC	p.D817N	ADAMTS16_uc003jdk.1_Missense_Mutation_p.D817N	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	817	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						CACTACTTTCGACTACAGACG	0.517													15	110					0	0	0.002450	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629306	9629306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:9629306C>T	uc003jem.1	-	1	1158	c.839G>A	c.(838-840)GGA>GAA	p.G280E		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	280	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						TTTAGGATTTCCTAAAATTAA	0.373													16	69					0	0	0.008871	0	0
DNAH5	1767	broad.mit.edu	37	5	13708295	13708295	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:13708295G>A	uc003jfd.2	-	76	13317	c.13275C>T	c.(13273-13275)AGC>AGT	p.S4425S	DNAH5_uc003jfc.2_Silent_p.S593S	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4425					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCAGATTTTCGCTCATGATGA	0.463									Kartagener_syndrome				25	209					0	0	0.005443	0	0
CDH12	1010	broad.mit.edu	37	5	21975370	21975370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:21975370C>T	uc010iuc.2	-	3	814	c.356G>A	c.(355-357)AGA>AAA	p.R119K	CDH12_uc011cno.1_Missense_Mutation_p.R119K|CDH12_uc003jgk.2_Missense_Mutation_p.R119K	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	119	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTTCTCTTCTCTATCTAGGCT	0.478										HNSCC(59;0.17)			11	62					0	0	0.013537	0	0
ELOVL7	79993	broad.mit.edu	37	5	60067810	60067810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:60067810G>A	uc003jsi.3	-	4	375	c.175C>T	c.(175-177)CGC>TGC	p.R59C	ELOVL7_uc011cqo.1_5'UTR|ELOVL7_uc010iwk.2_Missense_Mutation_p.R59C|ELOVL7_uc003jsj.3_Missense_Mutation_p.R46C	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	59					fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				AAGGGCTTGCGATTTTCCATG	0.413													4	39					0	0	0.009096	0	0
ENC1	8507	broad.mit.edu	37	5	73932233	73932233	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:73932233G>A	uc003kdc.3	-	2	1209	c.78C>T	c.(76-78)TCC>TCT	p.S26S	ENC1_uc011css.1_Intron	NM_003633	NP_003624	O14682	ENC1_HUMAN	ectodermal-neural cortex (with BTB-like domain)	26					nervous system development	cytoplasm|cytoskeleton|nuclear matrix	actin binding			ovary(1)|pancreas(1)|skin(1)	3		all_lung(232;0.0154)|Lung NSC(167;0.0331)|Ovarian(174;0.0798)		OV - Ovarian serous cystadenocarcinoma(47;1.45e-59)		CAGCGTAGGAGGACTTGTGAA	0.502													9	41					0	0	0.006214	0	0
THBS4	7060	broad.mit.edu	37	5	79351699	79351699	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:79351699C>T	uc003kgh.2	+	4	707	c.384C>T	c.(382-384)CTC>CTT	p.L128L		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	128	TSP N-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ACAGGATCCTCCTGAGGCTGA	0.577													22	158					0	0	0.002780	0	0
GPR98	84059	broad.mit.edu	37	5	89924464	89924464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:89924464C>T	uc003kju.2	+	8	1420	c.1324C>T	c.(1324-1326)CCC>TCC	p.P442S	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	442	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CAGCACTGATCCCTCACCAGT	0.438													11	83					0	0	0.013537	0	0
GPR98	84059	broad.mit.edu	37	5	89970018	89970018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:89970018G>A	uc003kju.2	+	23	5173	c.5077G>A	c.(5077-5079)GAT>AAT	p.D1693N	GPR98_uc003kjt.2_5'UTR|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1693	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGAAACGACTGATATCACCAT	0.428													3	19					0	0	0.009096	0	0
SEC24A	10802	broad.mit.edu	37	5	133996932	133996932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:133996932C>T	uc003kzs.2	+	2	509	c.221C>T	c.(220-222)TCT>TTT	p.S74F	SEC24A_uc011cxu.1_5'UTR	NM_021982	NP_068817	O95486	SC24A_HUMAN	SEC24 related gene family, member A	74					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCTGGACAGTCTAACTATGGT	0.493													23	173					0	0	0.002780	0	0
GFRA3	2676	broad.mit.edu	37	5	137600085	137600086	+	Missense_Mutation	DNP	CC	TT	TT	rs143061950	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:137600085_137600086CC>TT	uc003lcn.2	-	2	383_384	c.243_244GG>AA	c.(241-246)TCGGTC>TCAATC	p.V82I	GFRA3_uc003lco.2_Missense_Mutation_p.V82I	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	82					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCAGCAGGGACCGAAGGCTCCT	0.604													8	53					0	0	0.004672	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480653	140480653	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:140480653G>A	uc003lio.2	+	1	420	c.420G>A	c.(418-420)CTG>CTA	p.L140L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	140	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATGCATCTGAAAATCCTAG	0.403													16	129					0	0	0.007413	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552480	140552480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:140552480G>A	uc003lit.2	+	1	238	c.64G>A	c.(64-66)GGA>AGA	p.G22R		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	22					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTATTTCTGGGAATGTCTTG	0.483													9	95					0	0	0.010729	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574511	140574511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:140574511G>A	uc003lix.2	+	1	2560	c.2386G>A	c.(2386-2388)GGA>AGA	p.G796R		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	796	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAATAGCTTTGGATTTAATAT	0.353													6	30					0	0	0.003080	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588661	140588661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:140588661C>T	uc003liz.2	+	1	371	c.182C>T	c.(181-183)TCG>TTG	p.S61L	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	61	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGCTGTCTTCGCGGGGGGCT	0.507													8	115					0	0	0.008291	0	0
PCDHB12	56124	broad.mit.edu	37	5	140588672	140588672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:140588672C>T	uc003liz.2	+	1	382	c.193C>T	c.(193-195)CGG>TGG	p.R65W	PCDHB12_uc011dak.1_Intron	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	65	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCGGGGGGCTCGGGTGGTTTC	0.517													9	117					0	0	0.006214	0	0
SLC25A2	83884	broad.mit.edu	37	5	140683354	140683354	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:140683354C>A	uc003ljf.2	-	1	259	c.79G>T	c.(79-81)GGG>TGG	p.G27W		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	27	Solcar 1.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	AAGGGCTGCCCAGTCAGTACA	0.592													6	72					0.00448238	0.0045775	0.004482	1	0
PPARGC1B	133522	broad.mit.edu	37	5	149225417	149225417	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:149225417T>A	uc003lrc.2	+	11	2953	c.2911T>A	c.(2911-2913)TCC>ACC	p.S971T	PPARGC1B_uc003lrb.1_Missense_Mutation_p.S971T|PPARGC1B_uc003lrd.2_Missense_Mutation_p.S932T|PPARGC1B_uc003lrf.2_Missense_Mutation_p.S950T|PPARGC1B_uc003lre.1_Missense_Mutation_p.S950T	NM_133263	NP_573570	Q86YN6	PRGC2_HUMAN	peroxisome proliferator-activated receptor	971	RRM.				estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter	mediator complex	AF-2 domain binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|receptor activator activity|RNA binding|RNA polymerase II transcription cofactor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			CAACGAGCCCTCCTTCCAGCT	0.597													5	64					0	0	0.000602	0	0
CDX1	1044	broad.mit.edu	37	5	149563090	149563090	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:149563090G>A	uc003lrq.2	+	3	741	c.645G>A	c.(643-645)AAG>AAA	p.K215K		NM_001804	NP_001795	P47902	CDX1_HUMAN	caudal type homeobox 1	215						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGAACAAGAAGAAACAGCAGC	0.627													10	34					0	0	0.001855	0	0
SLC34A1	6569	broad.mit.edu	37	5	176821167	176821168	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr5:176821167_176821168CC>TT	uc003mgk.3	+	10	1246_1247	c.1145_1146CC>TT	c.(1144-1146)GCC>GTT	p.A382V		NM_003052	NP_003043	Q06495	NPT2A_HUMAN	solute carrier family 34 (sodium phosphate),	382	Cytoplasmic (Potential).				phosphate ion homeostasis|response to cadmium ion|response to lead ion|response to mercury ion|sodium ion transport	brush border membrane|integral to plasma membrane	protein binding|sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(1)	1	all_cancers(89;2.04e-05)|Renal(175;0.000269)|Lung NSC(126;0.000832)|all_lung(126;0.00152)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCAAGTGGCCAAGGTCATCC	0.366													33	211					0	0	0.004672	0	0
DHX16	8449	broad.mit.edu	37	6	30640560	30640560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:30640560C>T	uc003nqz.2	-	1	271	c.59G>A	c.(58-60)GGG>GAG	p.G20E	DHX16_uc011dmo.1_Intron	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	20					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CTCGCTCAGCCCCAACACCGA	0.672													6	45					0	0	0.003080	0	0
SFTA2	389376	broad.mit.edu	37	6	30899540	30899541	+	Nonsense_Mutation	DNP	CC	AG	AG			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:30899540_30899541CC>AG	uc003nsf.2	-	2	172_173	c.93_94GG>CT	c.(91-96)AAGGAG>AACTAG	p.31_32KE>N*		NM_205854	NP_995326	Q6UW10	SFTA2_HUMAN	surfactant associated protein G precursor	31_32						extracellular region					0						AGAAAAGACTCCTTCAGCTTCA	0.5													16	80					0	0	0.004672	0	0
VARS	7407	broad.mit.edu	37	6	31760888	31760888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:31760888C>T	uc003nxe.2	-	3	820	c.397G>A	c.(397-399)GGG>AGG	p.G133R	VARS_uc011doi.1_Intron	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	133	GST C-terminal.				translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CCCAGGGCCCCCAGCACAGCC	0.662													5	38					0	0	0.001984	0	0
SKIV2L	6499	broad.mit.edu	37	6	31933652	31933652	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:31933652C>T	uc003nyn.1	+	18	2453	c.2064C>T	c.(2062-2064)ACC>ACT	p.T688T	SKIV2L_uc011dou.1_Silent_p.T530T|SKIV2L_uc011dov.1_Silent_p.T495T	NM_006929	NP_008860	Q15477	SKIV2_HUMAN	superkiller viralicidic activity 2-like homolog	688	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent RNA helicase activity|protein binding|RNA binding			ovary(1)|large_intestine(1)|breast(1)|central_nervous_system(1)	4						ATGGCTCCACCTTCCGGGACC	0.607													10	64					0	0	0.010729	0	0
NOTCH4	4855	broad.mit.edu	37	6	32164129	32164129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:32164129C>T	uc003obb.2	-	29	5409	c.5270G>A	c.(5269-5271)GGA>GAA	p.G1757E	GPSM3_uc003oaz.2_5'Flank|NOTCH4_uc011dpt.1_Intron|NOTCH4_uc003oba.2_Missense_Mutation_p.G417E|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc011dpw.1_Missense_Mutation_p.G166E	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	1757	Cytoplasmic (Potential).|ANK 4.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						TTTATCGGCTCCGGCCTGGAG	0.607													27	140					0	0	0.010818	0	0
C6orf10	10665	broad.mit.edu	37	6	32261003	32261003	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:32261003C>T	uc011dpy.1	-	12	1620	c.1447G>A	c.(1447-1449)GGA>AGA	p.G483R	C6orf10_uc011dpx.1_Intron	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	483	Lys-rich.					integral to membrane				skin(1)	1						GCTTCCTGTCCTTTTAGTACA	0.299													20	160					0	0	0.014323	0	0
C6orf10	10665	broad.mit.edu	37	6	32261273	32261273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:32261273C>T	uc011dpy.1	-	12	1350	c.1177G>A	c.(1177-1179)GGA>AGA	p.G393R	C6orf10_uc011dpx.1_Missense_Mutation_p.G175R	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	393						integral to membrane				skin(1)	1						GCTTCCTGTCCCTTTGAGACA	0.488													14	151					0	0	0.006122	0	0
BTNL2	56244	broad.mit.edu	37	6	32362548	32362548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:32362548C>T	uc003obg.1	-	6	1333	c.1333G>A	c.(1333-1335)GAG>AAG	p.E445K	BTNL2_uc010jty.1_Missense_Mutation_p.E168K|BTNL2_uc010jtz.1_RNA|BTNL2_uc010jua.1_Missense_Mutation_p.E235K	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	445	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						GCGATTTTCTCCTCGCCCAAA	0.458													6	70					0	0	0.001984	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333333	33333333	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:33333333G>A	uc003shx.2	-	1	807	c.673C>T	c.(673-675)CCT>TCT	p.P225S		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						AGTTAGACAGGAGGCAGCAGC	0.577													5	19					0	0	0.004482	0	0
LYPLA2P1	653639	broad.mit.edu	37	6	33333342	33333342	+	Silent	SNP	G	A	A	rs140475230	by1000genomes	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:33333342G>A	uc003shx.2	-	1	798	c.664C>T	c.(664-666)CTG>TTG	p.L222L		NR_001444				SubName: Full=Lysophospholipase II; Flags: Fragment;												0						GGAGGCAGCAGCTTCTCAAGA	0.562													5	18					0	0	0.004482	0	0
DNAH8	1769	broad.mit.edu	37	6	38980272	38980272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:38980272C>T	uc003ooe.1	+	89	13522	c.12922C>T	c.(12922-12924)CTC>TTC	p.L4308F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TATACCTCAGCTCTGGAAAAG	0.408													18	77					0	0	0.008871	0	0
MUT	4594	broad.mit.edu	37	6	49399535	49399535	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:49399535T>C	uc003ozg.3	-	13	2414	c.2159A>G	c.(2158-2160)AAT>AGT	p.N720S		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	720	B12-binding.				fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ACCAAATACATTGGAAACACC	0.363													4	238					0	0	0.001984	0	0
RHAG	6005	broad.mit.edu	37	6	49604464	49604464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:49604464C>T	uc003ozk.3	-	1	124	c.62G>A	c.(61-63)GGA>GAA	p.G21E	RHAG_uc010jzl.2_Missense_Mutation_p.G21E|RHAG_uc010jzm.2_Missense_Mutation_p.G21E	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	21	Helical; (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					AACAAATAATCCAAATAAAAC	0.438													18	132					0	0	0.008871	0	0
TFAP2D	83741	broad.mit.edu	37	6	50696930	50696930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:50696930G>A	uc003paf.2	+	5	1300	c.788G>A	c.(787-789)CGC>CAC	p.R263H	TFAP2D_uc011dwt.1_RNA	NM_172238	NP_758438	Q7Z6R9	AP2D_HUMAN	transcription factor AP-2 beta-like 1	263							DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|breast(1)	7	Lung NSC(77;0.0334)					AATGGGGGCCGCTGCCTGAGA	0.418													4	127					0	0	0.009096	0	0
MTO1	25821	broad.mit.edu	37	6	74189658	74189658	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:74189658G>A	uc003pgy.3	+	6	1063	c.939_splice	c.e6-1	p.R313_splice	MTO1_uc010kav.2_Splice_Site_p.R313_splice|MTO1_uc003pgz.3_Splice_Site_p.R313_splice|MTO1_uc003pha.3_Splice_Site|MTO1_uc003phb.3_Splice_Site_p.R239_splice|MTO1_uc010kaw.1_5'Flank	NM_133645	NP_598400	Q9Y2Z2	MTO1_HUMAN	mitochondrial translation optimization 1 homolog						tRNA processing	mitochondrion	flavin adenine dinucleotide binding			ovary(3)|skin(2)|pancreas(1)	6						TTCTATTCTAGATACTGTCCC	0.393											OREG0003887	type=REGULATORY REGION|Gene=MTO1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	4	52					0	0	0.001168	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368449	111368449	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:111368449C>T	uc003puq.2	-	1	309	c.174G>A	c.(172-174)GGG>GGA	p.G58G		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						AAATCTTCTCCCCTTCTGTCT	0.517													8	64					0	0	0.004482	0	0
HDAC2	3066	broad.mit.edu	37	6	114274470	114274470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:114274470C>T	uc003pwd.1	-	6	892	c.892G>A	c.(892-894)GAA>AAA	p.E298K	HDAC2_uc003pwc.1_Missense_Mutation_p.E174K|HDAC2_uc003pwe.1_Missense_Mutation_p.E174K	NM_001527	NP_001518	Q92769	HDAC2_HUMAN	histone deacetylase 2	204	Histone deacetylase.				blood coagulation|dendrite development|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|maintenance of chromatin silencing|negative regulation of apoptosis|negative regulation of cell cycle|negative regulation of neuron projection development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of proteolysis|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|ESC/E(Z) complex|NuRD complex|Sin3 complex	chromatin binding|enzyme binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|sequence-specific DNA binding|transcription factor binding			skin(2)|ovary(1)|central_nervous_system(1)	4		all_cancers(87;0.000629)|all_epithelial(87;0.00274)|Colorectal(196;0.0317)|all_lung(197;0.24)		all cancers(137;0.00318)|OV - Ovarian serous cystadenocarcinoma(136;0.00569)|Epithelial(106;0.0112)|GBM - Glioblastoma multiforme(226;0.0832)	Vorinostat(DB02546)	GGAAAGTATTCCCCATATTTA	0.348													14	187					0	0	0.007413	0	0
CTAGE9	643854	broad.mit.edu	37	6	132031964	132031964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:132031964G>A	uc011ece.1	-	1	194	c.194C>T	c.(193-195)TCG>TTG	p.S65L	ENPP3_uc003qcu.3_Intron|ENPP3_uc010kfq.2_Intron|ENPP3_uc003qcv.2_Intron	NM_001145659	NP_001139131	A4FU28	CTGE9_HUMAN	CTAGE family, member 4-like	65						integral to membrane					0						ACTCCTAACCGATCTAAAACT	0.388													7	44					0	0	0.003080	0	0
MYB	4602	broad.mit.edu	37	6	135507070	135507070	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:135507070A>C	uc003qfc.2	+	2	252	c.53A>C	c.(52-54)GAC>GCC	p.D18A	MYB_uc003qfh.2_Missense_Mutation_p.D18A|MYB_uc003qfi.2_Missense_Mutation_p.D18A|MYB_uc010kgi.2_Missense_Mutation_p.D18A|MYB_uc003qfq.2_Missense_Mutation_p.D18A|MYB_uc010kgj.2_Missense_Mutation_p.D18A|MYB_uc003qfo.2_Missense_Mutation_p.D18A|MYB_uc003qfu.2_Missense_Mutation_p.D18A|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_5'UTR|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_5'UTR|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Missense_Mutation_p.D18A|MYB_uc003qgd.1_5'Flank	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	18					blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		GATGATGAGGACTTTGAGATG	0.448			T	NFIB	adenoid cystic carcinoma								10	110					0	0	0.013537	0	0
LATS1	9113	broad.mit.edu	37	6	150005366	150005367	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:150005366_150005367GG>AA	uc003qmu.1	-	4	1406_1407	c.858_859CC>TT	c.(856-861)TCCCGA>TCTTGA	p.R287*	LATS1_uc010kif.1_Nonsense_Mutation_p.R182*|LATS1_uc003qmv.1_Nonsense_Mutation_p.R287*|LATS1_uc003qmw.2_Nonsense_Mutation_p.R287*|LATS1_uc010kig.1_Nonsense_Mutation_p.R182*	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	287					cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		GGAGAGATTCGGGAGATTACGT	0.53													7	120					0	0	0.004672	0	0
PNLDC1	154197	broad.mit.edu	37	6	160239686	160239686	+	Silent	SNP	C	T	T	rs142457687	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:160239686C>T	uc003qsx.1	+	16	1395	c.1224C>T	c.(1222-1224)ATC>ATT	p.I408I	PNLDC1_uc003qsy.1_Silent_p.I419I	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	408	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		TCCCAAAGATCGTGAGTAGAT	0.582													4	50					0	0	0.009096	0	0
C6orf118	168090	broad.mit.edu	37	6	165713883	165713883	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:165713883C>T	uc003qum.3	-	3	882	c.846G>A	c.(844-846)TTG>TTA	p.L282L	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	282											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CACCAAATATCAAAGAACTGT	0.378													11	114					0	0	0.010729	0	0
MAD1L1	8379	broad.mit.edu	37	7	2262315	2262315	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:2262315C>T	uc003slh.1	-	5	632	c.366G>A	c.(364-366)GAG>GAA	p.E122E	MAD1L1_uc003slf.1_Silent_p.E122E|MAD1L1_uc003slg.1_Silent_p.E122E|MAD1L1_uc010ksh.1_Silent_p.E122E|MAD1L1_uc003sli.1_5'UTR|MAD1L1_uc010ksi.1_Silent_p.E75E|MAD1L1_uc010ksj.2_Silent_p.E122E	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	122	Potential.				cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		CCTGCATCTTCTCCTCCGCCC	0.622													6	43					0	0	0.001168	0	0
KIAA0415	9907	broad.mit.edu	37	7	4815384	4815384	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:4815384C>T	uc003sne.2	+	1	121	c.38C>T	c.(37-39)GCC>GTC	p.A13V	KIAA0415_uc010ksp.2_RNA	NM_014855	NP_055670	O43299	K0415_HUMAN	hypothetical protein LOC9907	13					cell death|double-strand break repair via homologous recombination	cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.091)|OV - Ovarian serous cystadenocarcinoma(56;8.35e-15)		CTCCACCAGGCCAGGTACGGG	0.692													4	18					0	0	0.000602	0	0
AGR3	155465	broad.mit.edu	37	7	16901068	16901068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:16901068C>T	uc003sts.2	-	6	380	c.307G>A	c.(307-309)GAA>AAA	p.E103K		NM_176813	NP_789783	Q8TD06	AGR3_HUMAN	breast cancer membrane protein 11 precursor	103						extracellular region					0	Lung NSC(10;0.0376)|all_lung(11;0.0721)|all_epithelial(12;0.202)			UCEC - Uterine corpus endometrioid carcinoma (126;0.184)		TCAGTGGTTTCATGCTAGCAG	0.323													17	129					0	0	0.004990	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44805124	44805124	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:44805124T>C	uc003tlr.2	+	16	2311	c.2188T>C	c.(2188-2190)TTT>CTT	p.F730L	ZMIZ2_uc003tlq.2_Missense_Mutation_p.F672L|ZMIZ2_uc003tls.2_Missense_Mutation_p.F704L|ZMIZ2_uc003tlt.2_Missense_Mutation_p.F353L|ZMIZ2_uc010kyj.2_Missense_Mutation_p.F252L|ZMIZ2_uc003tlu.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	730	Pro-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						CGCTGCCCCCTTTGCCCCCCT	0.687													4	19					0	0	0.001984	0	0
PMS2L11	441263	broad.mit.edu	37	7	76619638	76619638	+	RNA	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:76619638G>A	uc003ufw.3	+	2		c.492G>A			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						CCCTGCCACTGTGCCCATGCA	0.642													4	49					0	0	0.003080	0	0
SEMA3D	223117	broad.mit.edu	37	7	84671598	84671598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:84671598C>T	uc003uic.2	-	8	905	c.865G>A	c.(865-867)GAT>AAT	p.D289N	SEMA3D_uc010led.2_Missense_Mutation_p.D289N|SEMA3D_uc003uib.2_5'Flank	NM_152754	NP_689967	O95025	SEM3D_HUMAN	semaphorin 3D precursor	289	Sema.				cell differentiation|nervous system development	extracellular region|membrane	receptor activity			ovary(3)|large_intestine(2)	5						CCTCCTACATCATTCTGACAT	0.373													19	178					0	0	0.006122	0	0
TRRAP	8295	broad.mit.edu	37	7	98609040	98609040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:98609040C>T	uc003upp.2	+	71	11386	c.11177C>T	c.(11176-11178)CCT>CTT	p.P3726L	TRRAP_uc011kis.1_Missense_Mutation_p.P3697L|TRRAP_uc003upr.2_Missense_Mutation_p.P3432L|TRRAP_uc003ups.2_5'Flank	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3726	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GCCAACCGTCCTGTCCCATTT	0.527													7	83					0	0	0.003080	0	0
RELN	5649	broad.mit.edu	37	7	103141356	103141356	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:103141356T>C	uc003vca.2	-	53	8663	c.8503A>G	c.(8503-8505)AGG>GGG	p.R2835G	RELN_uc010liz.2_Missense_Mutation_p.R2835G	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2835					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TGATAGAACCTAAACCTTACC	0.433													17	129					0	0	0.007413	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				14	81					0	0	0.004007	0	0
TAS2R5	54429	broad.mit.edu	37	7	141491019	141491019	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr7:141491019C>T	uc003vwr.1	+	1	1003	c.858C>T	c.(856-858)ATC>ATT	p.I286I		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	286	Cytoplasmic (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					GTCAGAAGATCCTGTGGAAGA	0.493													14	112					0	0	0.003163	0	0
DLC1	10395	broad.mit.edu	37	8	12943340	12943340	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:12943340T>C	uc003wwm.2	-	18	5011	c.4567A>G	c.(4567-4569)AAA>GAA	p.K1523E	DLC1_uc003wwk.1_Missense_Mutation_p.K1086E|DLC1_uc003wwl.1_Missense_Mutation_p.K1120E|DLC1_uc011kxx.1_Missense_Mutation_p.K1012E	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1523					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						TTGGTGTCTTTGGTTTCAGTG	0.453													17	95					0	0	0.007413	0	0
SLC18A1	6570	broad.mit.edu	37	8	20005148	20005148	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:20005148G>A	uc011kyq.1	-	15	1767	c.1296C>T	c.(1294-1296)ATC>ATT	p.I432I	SLC18A1_uc003wzl.2_Silent_p.I219I|SLC18A1_uc003wzm.2_Silent_p.I432I|SLC18A1_uc011kyr.1_Silent_p.I432I|SLC18A1_uc003wzn.2_Silent_p.I400I|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Silent_p.I400I	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	432	Helical; (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		CCACATCAGCGATGGCGTAGA	0.547													3	41					0	0	0.004672	0	0
IKBKB	3551	broad.mit.edu	37	8	42147786	42147786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:42147786C>T	uc003xow.1	+	4	490	c.313C>T	c.(313-315)CGG>TGG	p.R105W	IKBKB_uc003xov.2_Missense_Mutation_p.R105W|IKBKB_uc010lxh.1_Intron|IKBKB_uc011lco.1_RNA|IKBKB_uc010lxj.1_Intron|IKBKB_uc003xox.1_5'UTR|IKBKB_uc011lcp.1_RNA|IKBKB_uc011lcq.1_Missense_Mutation_p.R103W|IKBKB_uc010lxi.1_RNA|IKBKB_uc011lcr.1_Missense_Mutation_p.R46W	NM_001556	NP_001547	O14920	IKKB_HUMAN	inhibitor of nuclear factor kappa B kinase beta	105	Protein kinase.				anti-apoptosis|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane|membrane raft	ATP binding|identical protein binding|IkappaB kinase activity			breast(3)|ovary(2)|lung(1)|skin(1)	7	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;6.21e-12)|Lung NSC(13;1.04e-10)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.0468)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;1.37e-10)|Colorectal(10;0.00102)|OV - Ovarian serous cystadenocarcinoma(14;0.00168)|Lung(22;0.00467)|LUSC - Lung squamous cell carcinoma(45;0.024)|COAD - Colon adenocarcinoma(11;0.0264)		Arsenic trioxide(DB01169)|Auranofin(DB00995)	AGGAGATCTCCGGAAGGTGAG	0.612													3	19					0	0	0.009096	0	0
RP1	6101	broad.mit.edu	37	8	55538745	55538745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:55538745C>T	uc003xsd.1	+	4	2451	c.2303C>T	c.(2302-2304)TCC>TTC	p.S768F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	768					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACTCAAAATTCCAAGGTTCAA	0.289													5	24					0	0	0.001984	0	0
PENK	5179	broad.mit.edu	37	8	57353922	57353922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:57353922G>A	uc003xsz.2	-	2	794	c.713C>T	c.(712-714)GCC>GTC	p.A238V	PENK_uc003xta.3_Missense_Mutation_p.A238V	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	238					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			CAGAGCCTCGGCAAAGCGCTT	0.478													5	96					0	0	0.000602	0	0
JPH1	56704	broad.mit.edu	37	8	75157300	75157300	+	Missense_Mutation	SNP	G	A	A	rs138696789		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:75157300G>A	uc003yae.2	-	4	1409	c.1369C>T	c.(1369-1371)CGC>TGC	p.R457C	JPH1_uc003yaf.2_Missense_Mutation_p.R457C|JPH1_uc003yag.1_Missense_Mutation_p.R321C	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	457	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			GTGCCTTTGCGATAAAAATGA	0.493													9	94					0	0	0.008291	0	0
KIAA1429	25962	broad.mit.edu	37	8	95507125	95507125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:95507125G>A	uc003ygo.1	-	20	4617	c.4604C>T	c.(4603-4605)CCA>CTA	p.P1535L	KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	1535					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			AGCCTGAAATGGAGTGAACCA	0.323													35	258					0	0	0.007835	0	0
ZFPM2	23414	broad.mit.edu	37	8	106811112	106811112	+	Silent	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:106811112C>T	uc003ymd.2	+	7	923	c.900C>T	c.(898-900)TTC>TTT	p.F300F	ZFPM2_uc011lhs.1_Silent_p.F31F|uc003yme.1_5'Flank	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	300	C2H2-type 1.				blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TGTGCCCCTTCCCACAGTGCA	0.488													12	146					0	0	0.004990	0	0
CYP11B2	1585	broad.mit.edu	37	8	143999174	143999174	+	Missense_Mutation	SNP	G	A	A	rs143027239		TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:143999174G>A	uc003yxk.1	-	1	86	c.83C>T	c.(82-84)GCC>GTC	p.A28V		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	28					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GGCCCGAGCGGCTCTAGTGCC	0.647									Familial_Hyperaldosteronism_type_I				17	99					0	0	0.007413	0	0
FAM83H	286077	broad.mit.edu	37	8	144808445	144808446	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr8:144808445_144808446GG>AA	uc003yzk.2	-	5	3254_3255	c.3185_3186CC>TT	c.(3184-3186)CCC>CTT	p.P1062L	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	1062					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			GGGTCGGGCCGGGGCTCGGGGC	0.644													7	15					0	0	0.004672	0	0
MLLT3	4300	broad.mit.edu	37	9	20414379	20414379	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:20414379G>A	uc003zoe.2	-	5	724	c.465C>T	c.(463-465)AGC>AGT	p.S155S	MLLT3_uc011lne.1_Silent_p.S123S|MLLT3_uc011lnf.1_Silent_p.S152S|MLLT3_uc003zof.2_5'UTR|MLLT3_uc011lng.1_Silent_p.S123S	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	155	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.149			T	MLL	ALL								3	34					0	0	0.004672	0	0
STOML2	30968	broad.mit.edu	37	9	35101910	35101910	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:35101910G>A	uc003zwi.2	-	4	396	c.333C>T	c.(331-333)GAC>GAT	p.D111D	STOML2_uc003zwh.2_Silent_p.D2D|STOML2_uc003zwj.2_Silent_p.D2D|STOML2_uc011lou.1_Silent_p.D111D|STOML2_uc003zwk.2_Silent_p.D60D	NM_013442	NP_038470	Q9UJZ1	STML2_HUMAN	stomatin (EPB72)-like 2	111						cytoskeleton	receptor binding				0			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CCTTGTAAGGGTCCATGATGC	0.483													25	60					0	0	0.007291	0	0
ZNF658	26149	broad.mit.edu	37	9	40773139	40773139	+	Silent	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:40773139T>C	uc004abs.2	-	5	2288	c.2136A>G	c.(2134-2136)AAA>AAG	p.K712K	ZNF658_uc010mmm.1_Intron|ZNF658_uc010mmn.1_Silent_p.K712K	NM_033160	NP_149350	Q5TYW1	ZN658_HUMAN	zinc finger protein 658	712					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		ATTCATAGGGTTTCTCCCCCG	0.403													66	387					0	0	0.014410	0	0
APBA1	320	broad.mit.edu	37	9	72055928	72055928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:72055928C>T	uc004ahh.2	-	11	2561	c.2285G>A	c.(2284-2286)AGC>AAC	p.S762N		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	762	PDZ 2.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						ATTCTGGACGCTGAAACCGAG	0.413													28	131					0	0	0.004878	0	0
PRUNE2	158471	broad.mit.edu	37	9	79465513	79465513	+	Silent	SNP	G	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:79465513G>C	uc010mpk.2	-	3	334	c.210C>G	c.(208-210)ACC>ACG	p.T70T	PRUNE2_uc004akn.2_Silent_p.T70T	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	70					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						ACCTCGTCTCGGTGAAGTAGT	0.388													19	180					0	0	0.010504	0	0
KIF27	55582	broad.mit.edu	37	9	86474171	86474171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:86474171G>A	uc004ana.2	-	14	3194	c.3050C>T	c.(3049-3051)TCA>TTA	p.S1017L	KIF27_uc010mpw.2_Missense_Mutation_p.S951L|KIF27_uc010mpx.2_Missense_Mutation_p.S920L	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	1017	Potential.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						AACTTGTTCTGAAATCTTTGT	0.398													18	103					0	0	0.007413	0	0
LRRC8A	56262	broad.mit.edu	37	9	131669516	131669516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:131669516G>A	uc004bwl.3	+	3	327	c.73G>A	c.(73-75)GAT>AAT	p.D25N	LRRC8A_uc010myp.2_Missense_Mutation_p.D25N|LRRC8A_uc010myq.2_Missense_Mutation_p.D25N	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	25					pre-B cell differentiation	integral to membrane					0						GCCGTGGTGGGATGTGTTCAC	0.542													7	53					0	0	0.003080	0	0
USP20	10868	broad.mit.edu	37	9	132630713	132630714	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:132630713_132630714CC>TT	uc004bys.2	+	11	1331_1332	c.1120_1121CC>TT	c.(1120-1122)CCC>TTC	p.P374F	USP20_uc004byr.2_Missense_Mutation_p.P374F|USP20_uc004byt.1_Missense_Mutation_p.P374F	NM_001110303	NP_001103773	Q9Y2K6	UBP20_HUMAN	ubiquitin specific protease 20	374					endocytosis|protein K48-linked deubiquitination|protein K63-linked deubiquitination|regulation of G-protein coupled receptor protein signaling pathway|ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm	cysteine-type endopeptidase activity|G-protein-coupled receptor binding|ubiquitin thiolesterase activity|zinc ion binding			lung(1)|breast(1)	2		Ovarian(14;0.00556)				GTCCTCCAGCCCCTGCCGGACG	0.693													5	30					0	0	0.004672	0	0
BRD3	8019	broad.mit.edu	37	9	136913572	136913572	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:136913572T>C	uc004cew.2	-	6	907	c.719A>G	c.(718-720)AAG>AGG	p.K240R	BRD3_uc004cex.2_Missense_Mutation_p.K240R	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	240						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		CTTCACGCCCTTTTTCTGCGA	0.632			T	NUT|C15orf55	lethal midline carcinoma of young people								3	122					0	0	0.004672	0	0
BRD3	8019	broad.mit.edu	37	9	136915577	136915577	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:136915577G>A	uc004cew.2	-	5	821	c.633C>T	c.(631-633)GTC>GTT	p.V211V	BRD3_uc004cex.2_Silent_p.V211V	NM_007371	NP_031397	Q15059	BRD3_HUMAN	bromodomain containing protein 3	211						nucleus	protein binding		BRD3/C15orf55(3)	stomach(4)|midline_organs(3)|kidney(1)	8				OV - Ovarian serous cystadenocarcinoma(145;1.43e-08)|Epithelial(140;8.41e-08)|all cancers(34;5.21e-07)		GGGGGACTGGGACCGACGTGA	0.687			T	NUT|C15orf55	lethal midline carcinoma of young people								13	108					0	0	0.003163	0	0
MXRA5	25878	broad.mit.edu	37	X	3238496	3238496	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:3238496C>T	uc004crg.3	-	5	5387	c.5230G>A	c.(5230-5232)GGA>AGA	p.G1744R		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1744						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CGGGTGACTCCCAACTGTGGA	0.463													4	12					0	0	0.009096	0	0
OTC	5009	broad.mit.edu	37	X	38271195	38271195	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:38271195T>A	uc004def.3	+	9	1162	c.948T>A	c.(946-948)TTT>TTA	p.F316L		NM_000531	NP_000522	P00480	OTC_HUMAN	ornithine carbamoyltransferase precursor	316					arginine biosynthetic process|urea cycle	mitochondrial matrix|ornithine carbamoyltransferase complex	ornithine carbamoyltransferase activity			ovary(1)|breast(1)	2					L-Citrulline(DB00155)|L-Ornithine(DB00129)	ATGAAGTCTTTTATTCTCCTC	0.428													30	71					0	0	0.007291	0	0
USP11	8237	broad.mit.edu	37	X	47101088	47101088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:47101088G>A	uc004dhp.2	+	9	1298	c.1298G>A	c.(1297-1299)CGA>CAA	p.R433Q	USP11_uc004dhq.2_Missense_Mutation_p.R160Q	NM_004651	NP_004642	P51784	UBP11_HUMAN	ubiquitin specific peptidase 11	433					protein deubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GCTGCTGGGCGACCGGATCAG	0.577													3	17					0	0	0.009096	0	0
CCNB3	85417	broad.mit.edu	37	X	50052937	50052937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:50052937G>A	uc004dox.3	+	6	2066	c.1768G>A	c.(1768-1770)GAA>AAA	p.E590K	CCNB3_uc004doy.2_Missense_Mutation_p.E590K|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	590					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GTCTTTACAGGAAAAGAAAAT	0.413													3	9					0	0	0.004672	0	0
ALAS2	212	broad.mit.edu	37	X	55051223	55051223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:55051223G>A	uc004dua.3	-	3	370	c.232C>T	c.(232-234)CAG>TAG	p.Q78*	ALAS2_uc004dub.3_Nonsense_Mutation_p.Q102*|ALAS2_uc004dud.3_Nonsense_Mutation_p.Q78*	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	78					cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	TTCCCATCCTGGAGTTCCGAC	0.483													10	51					0	0	0.010729	0	0
FAAH2	158584	broad.mit.edu	37	X	57458404	57458404	+	Silent	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:57458404G>A	uc004dvc.2	+	8	1199	c.1050G>A	c.(1048-1050)CTG>CTA	p.L350L		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	350						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						ATGTTAAACTGAAGAAAATGA	0.348										HNSCC(52;0.14)			10	38					0	0	0.010729	0	0
RPS6KA6	27330	broad.mit.edu	37	X	83319312	83319312	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:83319312C>T	uc004eej.1	-	22	2288	c.2211G>A	c.(2209-2211)ATG>ATA	p.M737I	RPS6KA6_uc011mqt.1_Missense_Mutation_p.M737I|RPS6KA6_uc011mqu.1_Missense_Mutation_p.M634I	NM_014496	NP_055311	Q9UK32	KS6A6_HUMAN	ribosomal protein S6 kinase polypeptide 6	737					axon guidance|central nervous system development|intracellular protein kinase cascade|synaptic transmission	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|central_nervous_system(1)|skin(1)	8						TTCGCTTTTTCATGCTCCGTC	0.453													4	21					0	0	0.009096	0	0
MCART6	401612	broad.mit.edu	37	X	103349556	103349557	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:103349556_103349557CC>TT	uc004elu.2	-	2	565_566	c.384_385GG>AA	c.(382-387)GAGGCC>GAAACC	p.A129T		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	129	Helical; Name=3; (Potential).|Solcar 2.				transport	integral to membrane|mitochondrial inner membrane					0						AGTGCCACGGCCTCCACCACGC	0.574													24	68					0	0	0.004672	0	0
RBMX	27316	broad.mit.edu	37	X	135956422	135956422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:135956422G>A	uc004fae.1	-	9	1265	c.1055C>T	c.(1054-1056)TCT>TTT	p.S352F	RBMX_uc004fac.1_5'Flank|RBMX_uc011mwf.1_Intron|RBMX_uc004fad.1_3'UTR|RBMX_uc011mwg.1_Missense_Mutation_p.S313F|RBMX_uc004faf.1_Missense_Mutation_p.S213F|RBMX_uc010nsf.1_Missense_Mutation_p.S313F|RBMX_uc004fag.1_Missense_Mutation_p.S224F	NM_002139	NP_002130	P38159	HNRPG_HUMAN	RNA binding motif protein, X-linked isoform 1	352						catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCTTTCCATAGAAGGGGGAAG	0.557													4	125					0	0	0.014323	0	0
MAGEA8	4107	broad.mit.edu	37	X	149013704	149013704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:149013704C>T	uc004fdw.1	+	3	873	c.658C>T	c.(658-660)CCG>TCG	p.P220S		NM_005364	NP_005355	P43361	MAGA8_HUMAN	melanoma antigen family A, 8	220	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CAGCCGCGCCCCGGAGGAGGC	0.572													16	41					0	0	0.006122	0	0
PNCK	139728	broad.mit.edu	37	X	152936406	152936406	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:152936406C>T	uc011myu.1	-	9	1208	c.1022G>A	c.(1021-1023)AGG>AAG	p.R341K	PNCK_uc011myt.1_Missense_Mutation_p.R275K|PNCK_uc004fia.2_Missense_Mutation_p.R293K|PNCK_uc004fhz.3_Missense_Mutation_p.R156K	NM_001039582	NP_001034671	Q6P2M8	KCC1B_HUMAN	pregnancy upregulated non-ubiquitously expressed	258	Protein kinase.					cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCAGGTGAACCTCTTCTGGGG	0.642													6	37					0	0	0.003080	0	0
TBL1Y	90665	broad.mit.edu	37	Y	6932064	6932064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrY:6932064G>A	uc004frb.2	+	8	978	c.331G>A	c.(331-333)GCA>ACA	p.A111T	TBL1Y_uc004frc.2_Missense_Mutation_p.A111T|TBL1Y_uc004frd.2_Missense_Mutation_p.A111T|TBL1Y_uc011nap.1_5'UTR	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	111					transcription, DNA-dependent						0						AGCCAGTGCAGCAGCCACAGA	0.547													3	25					0	0	0.004672	0	0
PTEN	5728	broad.mit.edu	37	10	89692971	89692972	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr10:89692971_89692972insA	uc001kfb.2	+	6	1486_1487	c.455_456insA	c.(454-456)CTAfs	p.L152fs		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	152	Phosphatase tensin-type.				activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R55fs*1(4)|p.?(2)|p.Y27fs*1(2)|p.Y27_N212>Y(2)|p.L152V(1)|p.F56fs*2(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		CAAGAGGCCCTAGATTTCTATG	0.381		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			8	78	---	---	---	---					
SCUBE2	57758	broad.mit.edu	37	11	9113009	9113011	+	In_Frame_Del	DEL	GCA	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:9113009_9113011delGCA	uc001mhh.1	-	1	145_147	c.65_67delTGC	c.(64-69)CTGCCG>CCG	p.L22del	SCUBE2_uc001mhi.1_In_Frame_Del_p.L22del|SCUBE2_uc001mhj.1_In_Frame_Del_p.L22del|FLJ46111_uc010rbv.1_5'Flank	NM_020974	NP_066025	Q9NQ36	SCUB2_HUMAN	CEGP1 protein precursor	22						extracellular region	calcium ion binding			ovary(1)|skin(1)	2				all cancers(16;8.57e-09)|Epithelial(150;4.42e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0116)		agcagtggcggcagcagcagcag	0.365													4	2	---	---	---	---					
BBS1	582	broad.mit.edu	37	11	66299205	66299209	+	Frame_Shift_Del	DEL	ATCAT	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr11:66299205_66299209delATCAT	uc001oij.1	+	16	1699_1703	c.1687_1691delATCAT	c.(1687-1692)ATCATCfs	p.I563fs	BBS1_uc001oii.1_Frame_Shift_Del_p.I600fs|BBS1_uc010rpg.1_Frame_Shift_Del_p.I466fs|BBS1_uc001oik.1_Frame_Shift_Del_p.I487fs|BBS1_uc001oil.1_Frame_Shift_Del_p.I434fs|ZDHHC24_uc001oim.1_Intron|ZDHHC24_uc009yrg.1_Intron|BBS1_uc010rph.1_Frame_Shift_Del_p.I231fs	NM_024649	NP_078925	Q8NFJ9	BBS1_HUMAN	Bardet-Biedl syndrome 1	563_564					nonmotile primary cilium assembly|photoreceptor cell maintenance|response to stimulus|retina homeostasis	BBSome|cilium membrane|cytoplasm	protein binding			ovary(1)	1						CATCTCAGACATCATCAAGGTAGGC	0.561									Bardet-Biedl_syndrome				11	138	---	---	---	---					
C19orf55	148137	broad.mit.edu	37	19	36255947	36255949	+	In_Frame_Del	DEL	CTC	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:36255947_36255949delCTC	uc002obq.1	+	7	712_714	c.639_641delCTC	c.(637-642)ATCTCC>ATC	p.S218del		NM_001039887	NP_001034976	Q2NL68	CS055_HUMAN	hypothetical protein LOC148137	218	Ser-rich.									ovary(1)	1	all_lung(56;2.87e-07)|Lung NSC(56;4.32e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AAGCCTCCATCTCCTCCTCCTCC	0.631													7	349	---	---	---	---					
FLT3LG	2323	broad.mit.edu	37	19	49978960	49978962	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr19:49978960_49978962delCTG	uc010yau.1	+	3	136_138	c.46_48delCTG	c.(46-48)CTGdel	p.L20del	FLT3LG_uc002pnv.2_5'UTR|FLT3LG_uc002pnw.2_5'UTR|FLT3LG_uc002pnu.2_In_Frame_Del_p.L20del|FLT3LG_uc002pnx.2_In_Frame_Del_p.L20del|FLT3LG_uc010yav.1_5'UTR	NM_001459	NP_001450	P49771	FLT3L_HUMAN	fms-related tyrosine kinase 3 ligand precursor	20					positive regulation of cell proliferation|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CTATCTCCTCCTGCTGCTGCTGC	0.621													7	118	---	---	---	---					
SF3A1	10291	broad.mit.edu	37	22	30742328	30742330	+	In_Frame_Del	DEL	CTG	-	-	rs141985009	byFrequency	TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr22:30742328_30742330delCTG	uc003ahl.2	-	3	496_498	c.364_366delCAG	c.(364-366)CAGdel	p.Q122del		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	122	Poly-Gln.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						GCTGGGTGGTCTGCTGCTGCTGC	0.596													7	144	---	---	---	---					
ZNF318	24149	broad.mit.edu	37	6	43323502	43323502	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr6:43323502delT	uc003oux.2	-	4	1648	c.1570delA	c.(1570-1572)AGGfs	p.R524fs	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	524					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CTACGTCGCCTTTTTTCCTGT	0.493													8	348	---	---	---	---					
CIZ1	25792	broad.mit.edu	37	9	130953109	130953111	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chr9:130953109_130953111delGCT	uc004btt.2	-	2	189_191	c.26_28delAGC	c.(25-30)CAGCTC>CTC	p.Q9del	CIZ1_uc004btr.2_In_Frame_Del_p.Q9del|CIZ1_uc004bts.2_In_Frame_Del_p.Q9del|CIZ1_uc011maq.1_In_Frame_Del_p.Q9del|CIZ1_uc004btu.2_In_Frame_Del_p.Q9del|CIZ1_uc011mar.1_5'UTR|CIZ1_uc011mas.1_In_Frame_Del_p.Q39del|CIZ1_uc004btw.2_In_Frame_Del_p.Q9del|CIZ1_uc004btv.2_In_Frame_Del_p.Q9del|CIZ1_uc004btx.2_In_Frame_Del_p.Q9del	NM_001131016	NP_001124488	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1 isoform	9	Gln-rich.			Missing (in Ref. 7; AAF23231).		nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4						tgttgctggagctgctgctgctg	0.330													3	5	---	---	---	---					
YY2	404281	broad.mit.edu	37	X	21857869	21857871	+	In_Frame_Del	DEL	TGG	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:21857869_21857871delTGG	uc010nfq.2	+	1	214_216	c.17_19delTGG	c.(16-21)CTGGTG>CTG	p.V11del	MBTPS2_uc004dae.2_In_Frame_Del_p.V11del|MBTPS2_uc004dab.2_In_Frame_Del_p.V11del	NM_206923	NP_996806	O15391	TYY2_HUMAN	YY2 transcription factor	Error:Variant_position_missing_in_O15391_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|plasma membrane	DNA binding|zinc ion binding			breast(1)|skin(1)	2						CCGGTGTCGCTGGTGGTGGTGGT	0.685													2	4	---	---	---	---					
PASD1	139135	broad.mit.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A3JE-06A-11D-A20D-08	TCGA-EE-A3JE-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	926eb11d-b441-480d-ae96-8d746c05b61f	a38db221-5203-444d-afa1-b3c9ba6564f7	g.chrX:150817142_150817144delGCT	uc004fev.3	+	9	1017_1019	c.685_687delGCT	c.(685-687)GCTdel	p.A236del		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	236	Poly-Ala.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGTTGAACCCgctgctgctgctg	0.355													7	110	---	---	---	---					
