Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
SPEN	23013	broad.mit.edu	37	1	16262741	16262741	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:16262741C>T	uc001axk.1	+	11	10210	c.10006C>T	c.(10006-10008)CGG>TGG	p.R3336W	SPEN_uc010obp.1_Missense_Mutation_p.R3295W	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3336	Pro-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		CCTGCCTTCCCGGACCAAGAC	0.602													5	13					0	0	0.001984	0	0
C1orf89	79363	broad.mit.edu	37	1	16559447	16559447	+	Missense_Mutation	SNP	G	A	A	rs141168630		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:16559447G>A	uc001ayd.2	-	3	753	c.331C>T	c.(331-333)CGT>TGT	p.R111C		NM_030907	NP_112169	Q9BU20	RSG1_HUMAN	hypothetical protein LOC79363	111	Small GTPase-like.				cellular protein localization|cilium assembly|exocytosis|protein transport|regulation of exocytosis|regulation of vesicle fusion|small GTPase mediated signal transduction	cilium|microtubule basal body	GTP binding				0		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00224)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;3.2e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;9.12e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.0114)|READ - Rectum adenocarcinoma(331;0.0649)		AACTCAAAACGAAACATGACG	0.592													24	76					0	0	0.006320	0	0
PADI4	23569	broad.mit.edu	37	1	17682598	17682598	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:17682598C>T	uc001baj.2	+	12	1459	c.1431C>T	c.(1429-1431)AGC>AGT	p.S477S		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	477					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	AGTTCCTGAGCTTTGTGCCAG	0.622													6	12					0	0	0.001168	0	0
IGSF21	84966	broad.mit.edu	37	1	18692048	18692048	+	Missense_Mutation	SNP	G	A	A	rs149943630		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:18692048G>A	uc001bau.1	+	6	1255	c.872G>A	c.(871-873)CGC>CAC	p.R291H	IGSF21_uc001bav.1_Missense_Mutation_p.R112H	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	291						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		CGCCACAGCCGCACCCCGAGC	0.632													16	52					0	0	0.004990	0	0
CDA	978	broad.mit.edu	37	1	20931527	20931527	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:20931527C>T	uc001bdk.2	+	2	440	c.261C>T	c.(259-261)ATC>ATT	p.I87I	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_Intron	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	87					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	CAATTGCTATCGCCAGGTGAG	0.428													8	8					0	0	0.004482	0	0
ALPL	249	broad.mit.edu	37	1	21890535	21890535	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:21890535G>A	uc001bet.2	+	6	731	c.474G>A	c.(472-474)GGG>GGA	p.G158G	ALPL_uc010odn.1_Silent_p.G106G|ALPL_uc010odo.1_Silent_p.G103G|ALPL_uc010odp.1_Silent_p.G81G|ALPL_uc001beu.3_Silent_p.G158G	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	158					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	GCACCCCAGGGAAATCTGTGG	0.647													6	19					0	0	0.001984	0	0
EPHB2	2048	broad.mit.edu	37	1	23111487	23111487	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:23111487G>A	uc009vqj.1	+	3	874	c.729G>A	c.(727-729)GGG>GGA	p.G243G	EPHB2_uc001bge.2_Silent_p.G243G|EPHB2_uc001bgf.2_Silent_p.G243G|EPHB2_uc010odu.1_Silent_p.G243G	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	243	Extracellular (Potential).|Cys-rich.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		ACTGTAACGGGGACGGCGAGT	0.652									Hereditary_Prostate_Cancer				16	56					0	0	0.001523	0	0
CSMD2	114784	broad.mit.edu	37	1	34087804	34087804	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:34087804G>A	uc001bxn.1	-	37	5699	c.5670C>T	c.(5668-5670)ATC>ATT	p.I1890I	CSMD2_uc001bxm.1_Silent_p.I1930I|CSMD2_uc001bxo.1_Silent_p.I803I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1890	CUB 11.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CAGATACGCTGATATCTGAGT	0.517													29	88					0	0	0.002836	0	0
FAM176B	55194	broad.mit.edu	37	1	36788049	36788049	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:36788049C>T	uc001cai.1	-	2	556	c.345G>A	c.(343-345)TCG>TCA	p.S115S	C1orf113_uc010oic.1_RNA|FAM176B_uc001caj.1_Silent_p.S115S	NM_018166	NP_060636	Q9NVM1	F176B_HUMAN	hypothetical protein LOC55194	115						integral to membrane				pancreas(1)	1						GCTCCTCCGCCGACGTGAAGA	0.731													4	27					0	0	0.000248	0	0
CYP4X1	260293	broad.mit.edu	37	1	47512139	47512139	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:47512139G>A	uc001cqt.2	+	9	1324	c.1074G>A	c.(1072-1074)TGG>TGA	p.W358*	CYP4X1_uc001cqr.2_Nonsense_Mutation_p.W357*|CYP4X1_uc001cqs.2_Nonsense_Mutation_p.W293*	NM_178033	NP_828847	Q8N118	CP4X1_HUMAN	cytochrome P450, family 4, subfamily X,	358						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2						ATCCTCACAGGGACCAGCTGG	0.473													8	36					0	0	0.006214	0	0
C8B	732	broad.mit.edu	37	1	57420467	57420467	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:57420467C>T	uc001cyp.2	-	4	492	c.425G>A	c.(424-426)GGG>GAG	p.G142E	C8B_uc010oon.1_Missense_Mutation_p.G80E|C8B_uc010ooo.1_Missense_Mutation_p.G90E	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	142	LDL-receptor class A.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex				central_nervous_system(2)|large_intestine(1)|ovary(1)	4						GTCATTGTCCCCATTGCAAAG	0.423													14	46					0	0	0.003163	0	0
ACADM	34	broad.mit.edu	37	1	76199254	76199254	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:76199254G>C	uc001dgw.3	+	5	758	c.328G>C	c.(328-330)GAA>CAA	p.E110Q	ACADM_uc010orc.1_Intron|ACADM_uc010ord.1_Missense_Mutation_p.E24Q|ACADM_uc009wbp.2_Missense_Mutation_p.E114Q|ACADM_uc009wbr.2_Missense_Mutation_p.E143Q|ACADM_uc010ore.1_Missense_Mutation_p.E74Q|ACADM_uc010orf.1_Intron|ACADM_uc001dgx.3_Missense_Mutation_p.E24Q|ACADM_uc010org.1_Intron	NM_000016	NP_000007	P11310	ACADM_HUMAN	medium-chain acyl-CoA dehydrogenase isoform a	110					carnitine biosynthetic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|medium-chain fatty acid catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|identical protein binding|medium-chain-acyl-CoA dehydrogenase activity			breast(2)|ovary(1)|skin(1)	4						TTTAATTAGTGAAGAATTGGC	0.348													23	49					0	0	0.007291	0	0
PTGFR	5737	broad.mit.edu	37	1	78958526	78958526	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:78958526C>T	uc001din.2	+	2	364	c.98C>T	c.(97-99)TCA>TTA	p.S33L	PTGFR_uc001dim.2_Missense_Mutation_p.S33L	NM_000959	NP_000950	P43088	PF2R_HUMAN	prostaglandin F receptor isoform a precursor	33	Helical; Name=1; (Potential).				parturition	extracellular region|integral to plasma membrane	prostaglandin F receptor activity			ovary(3)|breast(2)|skin(1)	6				Colorectal(170;0.248)	Bimatoprost(DB00905)|Latanoprost(DB00654)|Travoprost(DB00287)	GTATTTTTTTCAGTAATCTTC	0.443													12	40					0	0	0.001368	0	0
LPHN2	23266	broad.mit.edu	37	1	82447542	82447542	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:82447542G>T	uc001dit.3	+	18	3294	c.3113G>T	c.(3112-3114)TGG>TTG	p.W1038L	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.W1038L|LPHN2_uc001div.2_Missense_Mutation_p.W1038L|LPHN2_uc009wcd.2_Missense_Mutation_p.W1038L|LPHN2_uc001diw.2_Missense_Mutation_p.W622L|LPHN2_uc009wce.1_Missense_Mutation_p.W139L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1051	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		GGCCTCACCTGGTCCTTTGGG	0.398													11	157					3.07112e-06	5.83996e-06	0.000978	1	0
DPYD	1806	broad.mit.edu	37	1	98165049	98165049	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:98165049C>T	uc001drv.2	-	6	675	c.538G>A	c.(538-540)GAA>AAA	p.E180K	DPYD_uc010oub.1_RNA	NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	180					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GACATTTTTTCTGGGGGAGGC	0.423													17	82					0	0	0.006122	0	0
SORT1	6272	broad.mit.edu	37	1	109910034	109910034	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:109910034G>A	uc001dxm.1	-	3	485	c.436C>T	c.(436-438)CGA>TGA	p.R146*	SORT1_uc010ovi.1_Nonsense_Mutation_p.R10*|SORT1_uc009wfb.2_Nonsense_Mutation_p.R10*	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	146	BNR 1.|Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		TCTCACCTTCGATATAGCTTG	0.388													69	195					0	0	0.003610	0	0
GNAI3	2773	broad.mit.edu	37	1	110128924	110128924	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:110128924C>T	uc001dxz.2	+	6	834	c.677C>T	c.(676-678)GCC>GTC	p.A226V		NM_006496	NP_006487	P08754	GNAI3_HUMAN	guanine nucleotide binding protein (G protein),	226					cell cycle|cell division|inhibition of adenylate cyclase activity by G-protein signaling pathway|platelet activation|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			ovary(1)	1		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.046)|Colorectal(144;0.119)|Epithelial(280;0.139)|all cancers(265;0.147)|LUSC - Lung squamous cell carcinoma(189;0.237)		TTCTGTGTGGCCCTCAGTGAT	0.448													28	99					0	0	0.001786	0	0
EPS8L3	79574	broad.mit.edu	37	1	110300603	110300603	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:110300603C>T	uc001dyr.1	-	9	940	c.795G>A	c.(793-795)AGG>AGA	p.R265R	EPS8L3_uc001dys.1_Silent_p.R265R|EPS8L3_uc001dyq.1_Silent_p.R266R|EPS8L3_uc009wfm.1_Silent_p.R232R|EPS8L3_uc009wfn.1_Silent_p.R240R|EPS8L3_uc009wfo.1_Silent_p.R212R	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway	265						cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		ATTTCTTCTTCCTGCTGGTCT	0.547													21	56					0	0	0.003330	0	0
HIPK1	204851	broad.mit.edu	37	1	114510528	114510528	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:114510528T>C	uc001eem.2	+	12	2683	c.2522T>C	c.(2521-2523)CTC>CCC	p.L841P	HIPK1_uc001eel.2_Missense_Mutation_p.L841P|HIPK1_uc001een.2_Missense_Mutation_p.L841P|HIPK1_uc001eeo.2_Missense_Mutation_p.L467P|HIPK1_uc001eep.2_Missense_Mutation_p.L447P|HIPK1_uc001eeq.2_Missense_Mutation_p.L133P	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	841					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TCCAGTTCCCTCCCTTCGAAG	0.473													20	38					0	0	0.008871	0	0
ADAM30	11085	broad.mit.edu	37	1	120437263	120437263	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:120437263G>A	uc001eij.2	-	1	1851	c.1697C>T	c.(1696-1698)CCT>CTT	p.P566L		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	566	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		TGGCAAATCAGGGATGGTTTC	0.388													136	337					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152326001	152326002	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:152326001_152326002CC>TT	uc001ezw.3	-	3	4333_4334	c.4260_4261GG>AA	c.(4258-4263)AGGGGA>AGAAGA	p.G1421R	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1421							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGCCAGATCCCCTTCTTCCAG	0.53													54	125					0	0	0.004672	0	0
FLG2	388698	broad.mit.edu	37	1	152328424	152328424	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:152328424G>A	uc001ezw.3	-	3	1911	c.1838C>T	c.(1837-1839)TCA>TTA	p.S613L	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	613	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGACTGACCTGATCTAGACTC	0.507													51	142					0	0	0.003610	0	0
LCE3B	353143	broad.mit.edu	37	1	152586476	152586476	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:152586476C>T	uc010pds.1	+	1	190	c.190C>T	c.(190-192)CAC>TAC	p.H64Y		NM_178433	NP_848520	Q5TA77	LCE3B_HUMAN	late cornified envelope 3B	64	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0313)|Kidney(5;0.0367)		CTGCAGGTCCCACCGATGCCG	0.662													24	17					0	0	0.004656	0	0
SPRR1B	6699	broad.mit.edu	37	1	153004909	153004909	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:153004909C>T	uc001fba.2	+	2	152	c.88C>T	c.(88-90)CAG>TAG	p.Q30*	SPRR1B_uc009wnx.1_RNA	NM_003125	NP_003116	P22528	SPR1B_HUMAN	small proline-rich protein 1B	30					keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GCCTCCACCTCAGGAACCATG	0.622													38	105					0	0	0.005524	0	0
NPR1	4881	broad.mit.edu	37	1	153661937	153661937	+	Silent	SNP	C	T	T	rs139666221	byFrequency	TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:153661937C>T	uc001fcs.3	+	18	3118	c.2697C>T	c.(2695-2697)ACC>ACT	p.T899T	NPR1_uc010pdz.1_Silent_p.T645T|NPR1_uc010pea.1_Silent_p.T377T	NM_000906	NP_000897	P16066	ANPRA_HUMAN	natriuretic peptide receptor 1 precursor	899	Guanylate cyclase.|Cytoplasmic (Potential).				body fluid secretion|intracellular signal transduction|negative regulation of angiogenesis|negative regulation of cell growth|positive regulation of renal sodium excretion|positive regulation of urine volume|receptor guanylyl cyclase signaling pathway|regulation of blood pressure|regulation of blood vessel size|regulation of vascular permeability|regulation of vasodilation		ATP binding|GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|peptide receptor activity, G-protein coupled|protein kinase activity			ovary(3)|lung(2)|stomach(1)|breast(1)	7	all_lung(78;3.75e-32)|Lung NSC(65;1.37e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)		Erythrityl Tetranitrate(DB01613)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Nesiritide(DB04899)|Nitric Oxide(DB00435)|Nitroglycerin(DB00727)|Nitroprusside(DB00325)	AGGTGGTGACCCTGCTCAATG	0.537													22	77					0	0	0.002780	0	0
FAM189B	10712	broad.mit.edu	37	1	155220345	155220345	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:155220345G>A	uc001fjm.2	-	9	1838	c.1232C>T	c.(1231-1233)CCC>CTC	p.P411L	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_Missense_Mutation_p.P213L|FAM189B_uc001fjn.2_Missense_Mutation_p.P315L|FAM189B_uc001fjo.2_Missense_Mutation_p.P393L|FAM189B_uc001fjp.2_Intron	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	411						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						ACCCAGTGGGGGTGGAGCTTC	0.746													5	7					0	0	0.001168	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156910128	156910128	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:156910128C>T	uc001fqo.2	-	35	4524	c.3484G>A	c.(3484-3486)GGT>AGT	p.G1162S	ARHGEF11_uc010phu.1_Missense_Mutation_p.G578S|ARHGEF11_uc001fqn.2_Missense_Mutation_p.G1202S	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	1162					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity	p.G1162G(1)		ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					GGCAGGACACCCAGTTCCTCT	0.602													6	29					0	0	0.001168	0	0
FCRL5	83416	broad.mit.edu	37	1	157516898	157516898	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:157516898G>A	uc001fqu.2	-	3	300	c.142C>T	c.(142-144)CGC>TGC	p.R48C	FCRL5_uc009wsm.2_Missense_Mutation_p.R48C|FCRL5_uc010phv.1_Missense_Mutation_p.R48C|FCRL5_uc010phw.1_Intron|FCRL5_uc001fqv.1_Missense_Mutation_p.R48C|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	48	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GAGTAGAAGCGAAATCCCTTG	0.478													27	67					0	0	0.004656	0	0
OR10K2	391107	broad.mit.edu	37	1	158390247	158390247	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:158390247C>T	uc010pii.1	-	1	410	c.410G>A	c.(409-411)GGA>GAA	p.G137E		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					CACCCCATGTCCCATTAGCAC	0.502													11	57					0	0	0.000978	0	0
OR6Y1	391112	broad.mit.edu	37	1	158517057	158517057	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:158517057G>A	uc010pil.1	-	1	839	c.839C>T	c.(838-840)TCT>TTT	p.S280F		NM_001005189	NP_001005189	Q8NGX8	OR6Y1_HUMAN	olfactory receptor, family 6, subfamily Y,	280	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GTAGAGAACAGATACCACTTT	0.458													17	40					0	0	0.006122	0	0
CRP	1401	broad.mit.edu	37	1	159683493	159683493	+	Missense_Mutation	SNP	C	T	T	rs34340208	byFrequency	TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:159683493C>T	uc001ftw.2	-	2	601	c.497G>A	c.(496-498)GGA>GAA	p.G166E	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	166	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	GGACTGGCTTCCTTCAAAGTT	0.527													68	123					0	0	0.003610	0	0
ARHGAP30	257106	broad.mit.edu	37	1	161017931	161017931	+	Silent	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:161017931T>C	uc001fxl.2	-	12	3226	c.2880A>G	c.(2878-2880)GCA>GCG	p.A960A	USF1_uc001fxi.2_5'Flank|USF1_uc001fxj.2_5'Flank|ARHGAP30_uc001fxk.2_Silent_p.A749A|ARHGAP30_uc001fxm.2_Silent_p.A806A|ARHGAP30_uc009wtx.2_Silent_p.A633A	NM_001025598	NP_001020769	Q7Z6I6	RHG30_HUMAN	Rho GTPase activating protein 30 isoform 1	960					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|upper_aerodigestive_tract(1)	3	all_cancers(52;8.05e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00122)			GATTTGCAGGTGCCACATGAA	0.592													22	75					0	0	0.001523	0	0
OLFML2B	25903	broad.mit.edu	37	1	161976197	161976197	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:161976197C>T	uc001gbu.2	-	4	1037	c.613G>A	c.(613-615)GAG>AAG	p.E205K	OLFML2B_uc010pkq.1_Missense_Mutation_p.E205K	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	205	Potential.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TTATTCATCTCGGTTCGAATT	0.433													30	42					0	0	0.008361	0	0
ADCY10	55811	broad.mit.edu	37	1	167806491	167806491	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:167806491G>A	uc001ger.2	-	22	3371	c.3073C>T	c.(3073-3075)CGC>TGC	p.R1025C	ADCY10_uc009wvk.2_Missense_Mutation_p.R933C|ADCY10_uc010plj.1_Missense_Mutation_p.R872C	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1025					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CTCTACCTGCGATTTTCAGGA	0.343													12	44					0	0	0.001855	0	0
F5	2153	broad.mit.edu	37	1	169511615	169511615	+	Missense_Mutation	SNP	T	C	C	rs140110833	byFrequency	TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:169511615T>C	uc001ggg.1	-	13	2858	c.2713A>G	c.(2713-2715)AGG>GGG	p.R905G		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	905	2 X 17 AA tandem repeats.|1-1.|B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TCCCAGGGCCTCATTCCGGAA	0.483													3	125					0	0	0.000602	0	0
SELP	6403	broad.mit.edu	37	1	169586410	169586410	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:169586410C>T	uc001ggi.3	-	3	402	c.337G>A	c.(337-339)GAG>AAG	p.E113K	SELP_uc001ggh.2_5'UTR|SELP_uc009wvr.2_Missense_Mutation_p.E113K	NM_003005	NP_002996	P16109	LYAM3_HUMAN	selectin P precursor	113	Extracellular (Potential).|C-type lectin.				platelet activation|platelet degranulation|positive regulation of platelet activation	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane fraction|platelet alpha granule membrane|platelet dense granule membrane|soluble fraction	fucose binding|glycosphingolipid binding|heparin binding|lipopolysaccharide binding|oligosaccharide binding|sialic acid binding			ovary(2)|skin(2)	4	all_hematologic(923;0.208)				Clopidogrel(DB00758)|Heparin(DB01109)|Tirofiban(DB00775)	TTCTCAGCCTCGTTGGTGAGA	0.483													24	102					0	0	0.002780	0	0
SLC9A11	284525	broad.mit.edu	37	1	173552686	173552686	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:173552686C>T	uc001giz.2	-	6	1022	c.599G>A	c.(598-600)GGA>GAA	p.G200E	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	200					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						CCGAAAATTTCCAAAAAAAAT	0.279													14	34					0	0	0.002450	0	0
ASTN1	460	broad.mit.edu	37	1	177001814	177001814	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:177001814C>T	uc001glc.2	-	3	855	c.643G>A	c.(643-645)GAG>AAG	p.E215K	ASTN1_uc001glb.1_Missense_Mutation_p.E215K|ASTN1_uc001gld.1_Missense_Mutation_p.E215K|ASTN1_uc009wwx.1_Missense_Mutation_p.E215K|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	215					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CGCAGGCTCTCCCGTCCGTGC	0.617													10	25					0	0	0.008291	0	0
FAM5B	57795	broad.mit.edu	37	1	177226496	177226496	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:177226496C>T	uc001glf.2	+	4	957	c.645C>T	c.(643-645)ATC>ATT	p.I215I	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Silent_p.I110I	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	215						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						TGCACCATATCCAGATAGCCA	0.612													6	15					0	0	0.001984	0	0
C1orf14	81626	broad.mit.edu	37	1	182898848	182898848	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:182898848C>T	uc001gpu.2	-	6	1401	c.1116G>A	c.(1114-1116)AGG>AGA	p.R372R	C1orf14_uc001gpv.2_Silent_p.R253R|C1orf14_uc010pnz.1_Silent_p.R230R|C1orf14_uc001gpw.2_Silent_p.R92R	NM_030933	NP_112195	Q9BZQ2	SHP1L_HUMAN	chromosome 1 open reading frame 14	444											0				Colorectal(1306;1.64e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00267)		TTTTTCCTTTCCTACGCCTCA	0.264													5	29					0	0	0.001984	0	0
PTGS2	5743	broad.mit.edu	37	1	186647412	186647412	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:186647412C>T	uc001gsb.2	-	4	575	c.438G>A	c.(436-438)CCG>CCA	p.P146P	PTGS2_uc009wyo.2_Missense_Mutation_p.R30Q	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	146					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	CCAAGGGAGTCGGGCAATCAT	0.438													18	50					0	0	0.006122	0	0
ASPM	259266	broad.mit.edu	37	1	197073963	197073963	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:197073963G>A	uc001gtu.2	-	18	4675	c.4418C>T	c.(4417-4419)TCA>TTA	p.S1473L	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1473					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TCTATACCATGATTGTATGAT	0.294													7	19					0	0	0.001984	0	0
OPTC	26254	broad.mit.edu	37	1	203467897	203467897	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:203467897G>A	uc001gzu.1	+	4	575	c.459G>A	c.(457-459)CGG>CGA	p.R153R		NM_014359	NP_055174	Q9UBM4	OPT_HUMAN	opticin precursor	153	LRRNT.					proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0			BRCA - Breast invasive adenocarcinoma(75;0.109)			CTCTTCCTCGGAGGACTGCCT	0.567													13	48					0	0	0.001368	0	0
USH2A	7399	broad.mit.edu	37	1	215990482	215990482	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:215990482A>T	uc001hku.1	-	48	9814	c.9427T>A	c.(9427-9429)TAT>AAT	p.Y3143N		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3143	Extracellular (Potential).|Fibronectin type-III 18.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AGGAGATCATATCCAAGAATG	0.408										HNSCC(13;0.011)			17	39					0	0	0.007413	0	0
DISC1	27185	broad.mit.edu	37	1	231829908	231829908	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:231829908C>T	uc001huz.2	+	2	457	c.404C>T	c.(403-405)CCG>CTG	p.P135L	TSNAX-DISC1_uc010pwe.1_Missense_Mutation_p.P90L|TSNAX-DISC1_uc010pwf.1_Missense_Mutation_p.P90L|TSNAX-DISC1_uc010pwg.1_Missense_Mutation_p.P124L|TSNAX-DISC1_uc010pwh.1_Missense_Mutation_p.P90L|TSNAX-DISC1_uc010pwi.1_Missense_Mutation_p.P90L|TSNAX-DISC1_uc010pwj.1_Missense_Mutation_p.P124L|TSNAX-DISC1_uc010pwk.1_Missense_Mutation_p.P124L|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwo.1_Missense_Mutation_p.P135L|DISC1_uc010pwp.1_Missense_Mutation_p.P135L|DISC1_uc010pwq.1_Missense_Mutation_p.P135L|DISC1_uc010pwr.1_Missense_Mutation_p.P135L|DISC1_uc010pws.1_Missense_Mutation_p.P135L|DISC1_uc010pwt.1_Missense_Mutation_p.P135L|DISC1_uc010pwu.1_Intron|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Missense_Mutation_p.P135L|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Missense_Mutation_p.P135L|DISC1_uc010pxb.1_Missense_Mutation_p.P135L|DISC1_uc010pxc.1_Missense_Mutation_p.P135L|DISC1_uc010pxd.1_5'UTR|DISC1_uc010pxe.1_Missense_Mutation_p.P135L|DISC1_uc009xfr.2_Missense_Mutation_p.P90L|DISC1_uc010pxf.1_Missense_Mutation_p.P135L|DISC1_uc010pxg.1_Missense_Mutation_p.P135L|DISC1_uc010pxh.1_Missense_Mutation_p.P135L|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_5'UTR|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Missense_Mutation_p.P135L|DISC1_uc010pxn.1_5'UTR|DISC1_uc001hva.2_Missense_Mutation_p.P135L|DISC1_uc010pwm.1_Missense_Mutation_p.P135L|DISC1_uc001hux.1_Missense_Mutation_p.P135L|DISC1_uc001hvc.3_Missense_Mutation_p.P135L|DISC1_uc010pwn.1_Missense_Mutation_p.P135L	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	135	Interaction with MAP1A.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				CTTAGCTGGCCGTGTGGCCCT	0.612													9	17					0	0	0.004482	0	0
PCNXL2	80003	broad.mit.edu	37	1	233394102	233394102	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:233394102G>A	uc001hvl.2	-	5	1741	c.1506C>T	c.(1504-1506)TCC>TCT	p.S502S	PCNXL2_uc009xfu.2_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	502						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				CCTTAGACTCGGAGCCTGTAT	0.562													18	29					0	0	0.002299	0	0
ACTN2	88	broad.mit.edu	37	1	236881274	236881274	+	Splice_Site	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:236881274T>C	uc001hyf.2	+	2	445	c.241_splice	c.e2+2	p.G81_splice	ACTN2_uc001hyg.2_Splice_Site|ACTN2_uc009xgi.1_Splice_Site_p.G81_splice	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2						focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TCATCTCAGGTTGGTGTTATA	0.448													2	11					0	0	0.004672	0	0
OR2T12	127064	broad.mit.edu	37	1	248458774	248458774	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:248458774G>A	uc010pzj.1	-	1	107	c.107C>T	c.(106-108)TCC>TTC	p.S36F		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			GCTAAACAGGGAGGTCAAAAC	0.502													20	50					0	0	0.008871	0	0
OR2T1	26696	broad.mit.edu	37	1	248569888	248569888	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:248569888C>T	uc010pzm.1	+	1	593	c.593C>T	c.(592-594)TCC>TTC	p.S198F		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	198	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATAGCAGGTTCCTGGTTTGGG	0.542													14	48					0	0	0.003163	0	0
OR2T11	127077	broad.mit.edu	37	1	248790197	248790197	+	Missense_Mutation	SNP	A	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr1:248790197A>T	uc001ier.1	-	1	233	c.233T>A	c.(232-234)CTC>CAC	p.L78H		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	78	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GTCTGCCAGGAGTTTTGGGAC	0.488													19	29					0	0	0.007413	0	0
DIP2C	22982	broad.mit.edu	37	10	465122	465122	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:465122G>A	uc001ifp.2	-	6	712	c.622C>T	c.(622-624)CCT>TCT	p.P208S		NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	208						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		GTTACGTCAGGAGGTGCAGAA	0.537													24	59					0	0	0.004656	0	0
PRKCQ	5588	broad.mit.edu	37	10	6520992	6520992	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:6520992G>A	uc001ijj.1	-	12	1390	c.1315C>T	c.(1315-1317)CCG>TCG	p.P439S	PRKCQ_uc009xim.1_Missense_Mutation_p.P439S|PRKCQ_uc001iji.1_Missense_Mutation_p.P472S|PRKCQ_uc009xin.1_Missense_Mutation_p.P403S|PRKCQ_uc010qax.1_Missense_Mutation_p.P314S	NM_006257	NP_006248	Q04759	KPCT_HUMAN	protein kinase C, theta	439	Protein kinase.				axon guidance|cellular component disassembly involved in apoptosis|intracellular signal transduction|membrane protein ectodomain proteolysis|platelet activation|regulation of cell growth|T cell receptor signaling pathway	cytosol	ATP binding|metal ion binding|protein binding|protein kinase C activity			ovary(3)|lung(2)|large_intestine(1)	6						GTCAGAAACGGATGCTCCCAG	0.473													8	26					0	0	0.004482	0	0
DHTKD1	55526	broad.mit.edu	37	10	12149924	12149924	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:12149924C>T	uc001ild.3	+	12	2163	c.2064C>T	c.(2062-2064)CTC>CTT	p.L688L		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	688					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			CCAAGTGGCTCCTACAAAGCG	0.552													60	190					0	0	0.003610	0	0
MPP7	143098	broad.mit.edu	37	10	28378627	28378627	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:28378627C>T	uc001iua.1	-	14	1500	c.1096G>A	c.(1096-1098)GAA>AAA	p.E366K	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.E366K|MPP7_uc009xla.2_Missense_Mutation_p.E366K|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	366					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						CTGTATTTTTCATTAGTTTGT	0.393													25	89					0	0	0.003954	0	0
RBP3	5949	broad.mit.edu	37	10	48389680	48389680	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:48389680C>T	uc001jez.2	-	1	1312	c.1198G>A	c.(1198-1200)GCG>ACG	p.A400T		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	400	4 X approximate tandem repeats.|2.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	GCGTCGGGCGCGGGCCAAGAA	0.642													17	35					0	0	0.006122	0	0
C10orf72	196740	broad.mit.edu	37	10	50315757	50315757	+	Silent	SNP	G	A	A	rs151199777	byFrequency	TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:50315757G>A	uc001jhf.2	-	2	368	c.339C>T	c.(337-339)TCC>TCT	p.S113S	C10orf72_uc001jhh.2_Silent_p.S113S	NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	113	Ig-like.|Extracellular (Potential).					integral to membrane|plasma membrane					0						GTGTCAAGACGGAGAGCCTGT	0.622													22	46					0	0	0.003954	0	0
CCDC6	8030	broad.mit.edu	37	10	61554277	61554277	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:61554277G>A	uc001jks.3	-	8	1820	c.1184C>T	c.(1183-1185)TCC>TTC	p.S395F		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	395						cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		AAGACCCGGGGAATTGTAATA	0.453													9	22					0	0	0.006214	0	0
ANK3	288	broad.mit.edu	37	10	61830314	61830314	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:61830314T>C	uc001jky.2	-	37	10517	c.10325A>G	c.(10324-10326)AAG>AGG	p.K3442R	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3442					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GATATCTTTCTTAATTTCCAT	0.463													16	33					0	0	0.003163	0	0
MYST4	23522	broad.mit.edu	37	10	76788814	76788814	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:76788814A>G	uc001jwn.1	+	18	4725	c.4232A>G	c.(4231-4233)GAG>GGG	p.E1411G	MYST4_uc001jwo.1_Missense_Mutation_p.E1119G|MYST4_uc001jwp.1_Missense_Mutation_p.E1228G	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1411	Poly-Glu.				histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					CACGAAGAGGAGGAGGAAGAG	0.478			T	CREBBP	AML								6	32					0	0	0.001984	0	0
PAPSS2	9060	broad.mit.edu	37	10	89468991	89468991	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:89468991C>T	uc001kex.2	+	2	329	c.66C>T	c.(64-66)GCC>GCT	p.A22A	PAPSS2_uc001kew.2_Silent_p.A22A|PAPSS2_uc009xtg.1_RNA	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	22	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		TCTATCAGGCCCACCATGTGA	0.418													9	27					0	0	0.000978	0	0
CYP2C19	1557	broad.mit.edu	37	10	96541700	96541700	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:96541700G>A	uc010qnz.1	+	5	765	c.765G>A	c.(763-765)ATG>ATA	p.M255I	CYP2C19_uc009xus.1_Missense_Mutation_p.M120I|CYP2C19_uc010qny.1_Missense_Mutation_p.M233I	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	255					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AAGAATCGATGGACATCAACA	0.353													10	45					0	0	0.008291	0	0
CYP2C8	1558	broad.mit.edu	37	10	96802653	96802653	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:96802653G>A	uc001kkb.2	-	7	1238	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Silent_p.I311I|CYP2C8_uc010qob.1_Silent_p.I295I|CYP2C8_uc010qoc.1_Silent_p.I279I|CYP2C8_uc010qod.1_Silent_p.I295I	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	381					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	TTACCTTGGGGATGAGGTAGT	0.453													15	55					0	0	0.004990	0	0
CC2D2B	387707	broad.mit.edu	37	10	97775968	97775968	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:97775968G>A	uc001kll.2	+	6	618	c.419G>A	c.(418-420)AGT>AAT	p.S140N	uc001klg.1_Intron|uc001klj.1_Intron|CC2D2B_uc001klk.2_Intron|CC2D2B_uc010qop.1_Missense_Mutation_p.S140N	NM_001001732	NP_001001732	Q6DHV5	C2D2B_HUMAN	coiled-coil and C2 domain containing 2B isoform	140										ovary(1)	1		Colorectal(252;0.158)		Epithelial(162;7.08e-08)|all cancers(201;2.71e-06)		CACTGCATCAGTTTAGCTATC	0.423													5	15					0	0	0.000602	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116093018	116093018	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:116093018G>T	uc001lbn.2	-	3	483	c.182C>A	c.(181-183)ACC>AAC	p.T61N	AFAP1L2_uc001lbo.2_Missense_Mutation_p.T61N|AFAP1L2_uc010qse.1_Missense_Mutation_p.T61N|AFAP1L2_uc001lbp.2_Missense_Mutation_p.T61N|AFAP1L2_uc001lbr.1_Missense_Mutation_p.T61N	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	61					inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		CTTGTTGATGGTCACTTTGTT	0.498													14	43					1.49906e-05	2.84497e-05	0.002450	1	0
PNLIPRP2	5408	broad.mit.edu	37	10	118383596	118383596	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:118383596C>T	uc001lcq.2	+	5	216	c.193C>T	c.(193-195)CCA>TCA	p.P65S	PNLIPRP2_uc009xyu.1_RNA|PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	64					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		AAATGAAAATCCAAACAACTT	0.498													14	51					0	0	0.001855	0	0
FGFR2	2263	broad.mit.edu	37	10	123256123	123256123	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:123256123C>T	uc010qtk.1	-	14	2433	c.1786G>A	c.(1786-1788)GAG>AAG	p.E596K	FGFR2_uc010qtg.1_Missense_Mutation_p.E484K|FGFR2_uc010qth.1_Missense_Mutation_p.E481K|FGFR2_uc010qti.1_Missense_Mutation_p.E507K|FGFR2_uc010qtj.1_Missense_Mutation_p.E597K|FGFR2_uc010qtl.1_Missense_Mutation_p.E480K|FGFR2_uc010qtm.1_Missense_Mutation_p.E479K|FGFR2_uc001lfl.3_Missense_Mutation_p.E597K|FGFR2_uc001lfm.2_Missense_Mutation_p.E508K|FGFR2_uc001lfg.3_Missense_Mutation_p.E204K	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	596	Cytoplasmic (Potential).|Protein kinase.				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GTCATCTGCTCCTCAGGAACA	0.517		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				39	143					0	0	0.004289	0	0
TACC2	10579	broad.mit.edu	37	10	123846584	123846584	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:123846584C>T	uc001lfv.2	+	4	4929	c.4569C>T	c.(4567-4569)CCC>CCT	p.P1523P	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.P1523P|TACC2_uc010qtv.1_Silent_p.P1523P	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1523						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GTGTCCCACCCACACTGAGGG	0.632													10	26					0	0	0.001855	0	0
CPXM2	119587	broad.mit.edu	37	10	125521433	125521433	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:125521433C>T	uc001lhk.1	-	11	2057	c.1732G>A	c.(1732-1734)GAG>AAG	p.E578K	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	578					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GTGCCCTCCTCCTTCTGGAAG	0.667													5	18					0	0	0.000602	0	0
KNDC1	85442	broad.mit.edu	37	10	135038295	135038295	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:135038295C>T	uc001llz.1	+	30	5152	c.5151C>T	c.(5149-5151)CTC>CTT	p.L1717L		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1717	Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		TTTCCACACTCGCCGCAGATA	0.577													5	19					0	0	0.000602	0	0
MUC5B	727897	broad.mit.edu	37	11	1261051	1261051	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:1261051C>T	uc009ycr.1	+	44	5811	c.5685C>T	c.(5683-5685)CCC>CCT	p.P1895P	MUC5B_uc001ltb.2_Silent_p.P1205P|MUC5B_uc001lta.2_Silent_p.P870P	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1202	Cys-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		AGTGCCCACCCAGCCAGCCCT	0.612													5	14					0	0	0.001168	0	0
HBG2	3048	broad.mit.edu	37	11	5275577	5275577	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:5275577G>A	uc001mai.1	-	2	697	c.260C>T	c.(259-261)GCC>GTC	p.A87V	HBG2_uc001mak.1_RNA|HBG2_uc001maj.1_Missense_Mutation_p.A87V	NM_000559	NP_000550	P69892	HBG2_HUMAN	A-gamma globin	87					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTCAGCTGGGCAAAGGTGCC	0.522													19	100					0	0	0.002780	0	0
LYVE1	10894	broad.mit.edu	37	11	10585602	10585602	+	Missense_Mutation	SNP	G	C	C	rs140681022		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:10585602G>C	uc001miv.2	-	3	568	c.282C>G	c.(280-282)TTC>TTG	p.F94L	uc001miu.2_Intron|LYVE1_uc010rca.1_Intron	NM_006691	NP_006682	Q9Y5Y7	LYVE1_HUMAN	lymphatic vessel endothelial hyaluronan receptor	94	Link.|Extracellular (Potential).				anatomical structure morphogenesis|cell-matrix adhesion|cellular component movement|response to wounding|transport	integral to plasma membrane|membrane fraction		p.F94F(1)		central_nervous_system(1)|skin(1)	2				all cancers(16;7.22e-08)|Epithelial(150;1.03e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0609)		AGATGACCACGAATCCATCTC	0.448													6	22					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	11	31086055	31086055	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:31086055C>T	uc009yjk.1	-	8	965	c.896G>A	c.(895-897)AGG>AAG	p.R299K	uc009yjl.1_Missense_Mutation_p.R227K|DCDC1_uc001msu.1_Missense_Mutation_p.R470K					RecName: Full=Doublecortin domain-containing protein 5;																		TTCCAGTTTCCTCACCAGTGC	0.473													26	113					0	0	0.007291	0	0
C11orf41	25758	broad.mit.edu	37	11	33569401	33569402	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:33569401_33569402CC>TG	uc001mup.3	+	3	2728_2729	c.2604_2605CC>TG	c.(2602-2607)TTCCAC>TTTGAC	p.H869D	C11orf41_uc001mun.1_Missense_Mutation_p.H869D	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	863						integral to membrane				ovary(2)	2						GGAAGGCTTTCCACCAGAACGA	0.465													4	15					0	0	0.004672	0	0
SLC1A2	6506	broad.mit.edu	37	11	35333798	35333798	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:35333798C>T	uc001mwd.2	-	4	1100	c.508G>A	c.(508-510)GAC>AAC	p.D170N	SLC1A2_uc001mwe.2_Missense_Mutation_p.D161N|SLC1A2_uc010rev.1_Missense_Mutation_p.D170N	NM_004171	NP_004162	P43004	EAA2_HUMAN	excitatory amino acid transporter 2	170	Extracellular (Potential).				D-aspartate import|L-glutamate import|synaptic transmission	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|central_nervous_system(1)	3	all_lung(20;0.211)|all_epithelial(35;0.234)	all_hematologic(20;0.109)	STAD - Stomach adenocarcinoma(6;0.00731)		L-Glutamic Acid(DB00142)	CGAATAAGGTCCAGGAAGGCA	0.488													41	102					0	0	0.008740	0	0
RAG1	5896	broad.mit.edu	37	11	36597229	36597229	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:36597229C>T	uc001mwu.3	+	2	2499	c.2375C>T	c.(2374-2376)CCT>CTT	p.P792L	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	792					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GAGACAGTCCCTTCCATAGAT	0.488									Familial_Hemophagocytic_Lymphohistiocytosis				16	60					0	0	0.004990	0	0
TTC17	55761	broad.mit.edu	37	11	43418915	43418915	+	Silent	SNP	C	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:43418915C>A	uc001mxi.2	+	7	806	c.792C>A	c.(790-792)GCC>GCA	p.A264A	TTC17_uc001mxh.2_Silent_p.A264A|TTC17_uc010rfj.1_Silent_p.A207A|TTC17_uc001mxj.2_Silent_p.A34A	NM_018259	NP_060729	Q96AE7	TTC17_HUMAN	tetratricopeptide repeat domain 17	264							binding			ovary(5)	5						AAGACATTGCCCTGGTCAACC	0.453													16	57					2.23348e-06	4.25551e-06	0.004007	1	0
CKAP5	9793	broad.mit.edu	37	11	46771981	46771981	+	Silent	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:46771981T>C	uc001ndi.1	-	42	5657	c.5547A>G	c.(5545-5547)GGA>GGG	p.G1849G	CKAP5_uc009ylg.1_Silent_p.G1742G|CKAP5_uc001ndj.1_Silent_p.G1789G|CKAP5_uc001ndh.1_Silent_p.G778G	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1849					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						ACTCTGCTAGTCCCTGGTGAA	0.418													5	24					0	0	0.000602	0	0
OR4C3	256144	broad.mit.edu	37	11	48347042	48347042	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:48347042C>T	uc010rhv.1	+	1	550	c.550C>T	c.(550-552)CAG>TAG	p.Q184*		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	157	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TTCATTGGTTCAGCTCCTCCT	0.527													14	58					0	0	0.002450	0	0
OR5L2	26338	broad.mit.edu	37	11	55595549	55595549	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:55595549G>A	uc001nhy.1	+	1	855	c.855G>A	c.(853-855)CTG>CTA	p.L285L		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TTCCCATGCTGAACCCCCTGA	0.443										HNSCC(27;0.073)			5	18					0	0	0.001168	0	0
OR8I2	120586	broad.mit.edu	37	11	55861531	55861531	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:55861531T>C	uc010rix.1	+	1	748	c.748T>C	c.(748-750)TTT>CTT	p.F250L		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					TGTAACTATCTTTTATGGGTC	0.483													23	73					0	0	0.003330	0	0
MPEG1	219972	broad.mit.edu	37	11	58979353	58979353	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:58979353T>A	uc001nnu.3	-	1	1142	c.986A>T	c.(985-987)AAG>ATG	p.K329M		NM_001039396	NP_001034485	Q2M385	MPEG1_HUMAN	macrophage expressed gene 1 precursor	329	MACPF.|Extracellular (Potential).					integral to membrane				ovary(1)|skin(1)	2		all_epithelial(135;0.125)				CTTTGACACCTTCTTCACCAG	0.522													14	33					0	0	0.002450	0	0
CTTN	2017	broad.mit.edu	37	11	70265858	70265858	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:70265858C>T	uc001opv.3	+	9	781	c.575C>T	c.(574-576)TCC>TTC	p.S192F	CTTN_uc001opu.2_Missense_Mutation_p.S192F|CTTN_uc001opw.3_Missense_Mutation_p.S192F|CTTN_uc010rqm.1_5'Flank|CTTN_uc001opx.2_5'Flank	NM_005231	NP_005222	Q14247	SRC8_HUMAN	cortactin isoform a	192	Cortactin 4.					cell cortex|cytoskeleton|lamellipodium|ruffle|soluble fraction	protein binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(2;4.34e-41)|LUSC - Lung squamous cell carcinoma(11;1.51e-13)|STAD - Stomach adenocarcinoma(18;0.0513)	Lung(977;0.0234)|LUSC - Lung squamous cell carcinoma(976;0.133)		TTAGATTACTCCAAAGGTTTC	0.388													6	21					0	0	0.001168	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800327	74800327	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:74800327C>T	uc010rro.1	-	1	432	c.432G>A	c.(430-432)CAG>CAA	p.Q144Q		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	144	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TAGCATTGGTCTGTGGGTTCA	0.542													14	62					0	0	0.004007	0	0
USP35	57558	broad.mit.edu	37	11	77907290	77907290	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:77907290C>T	uc009yva.1	+	2	247	c.1_splice	c.e2-2	p.M1_splice	USP35_uc001oze.2_Intron|USP35_uc001ozc.2_Intron|USP35_uc010rsp.1_Intron|USP35_uc001ozd.2_5'Flank|USP35_uc001ozf.2_5'Flank	NM_020798	NP_065849	Q9P2H5	UBP35_HUMAN	ubiquitin specific protease 35						ubiquitin-dependent protein catabolic process		binding|cysteine-type peptidase activity|ubiquitin thiolesterase activity			lung(2)|ovary(1)	3	all_cancers(14;3.77e-18)|all_epithelial(13;6.16e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.04e-25)			AGCGCGGGCGCCATGGACAAG	0.632													18	41					0	0	0.008871	0	0
ODZ4	26011	broad.mit.edu	37	11	78381171	78381171	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:78381171C>T	uc001ozl.3	-	32	6682	c.6219G>A	c.(6217-6219)GAG>GAA	p.E2073E	ODZ4_uc001ozk.3_Silent_p.E298E|ODZ4_uc009yvb.1_Silent_p.E657E	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	2073	YD 12.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						CCATGCCTTCCTCAGTGAAGC	0.542													8	15					0	0	0.004482	0	0
GRM5	2915	broad.mit.edu	37	11	88300511	88300511	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:88300511C>T	uc001pcq.2	-	7	2540	c.2340G>A	c.(2338-2340)ACG>ACA	p.T780T	GRM5_uc009yvm.2_Silent_p.T780T	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	780	Helical; Name=6; (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	TAATGCAGGTCGTGTACATTG	0.458													30	64					0	0	0.001786	0	0
DDI1	414301	broad.mit.edu	37	11	103908505	103908505	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:103908505T>C	uc001phr.2	+	1	1198	c.955T>C	c.(955-957)TCC>CCC	p.S319P	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	319					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		GTGCTCTTTCTCCATACTTGA	0.453													20	65					0	0	0.007413	0	0
DDI1	414301	broad.mit.edu	37	11	103908533	103908533	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:103908533T>G	uc001phr.2	+	1	1226	c.983T>G	c.(982-984)ATG>AGG	p.M328R	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	328					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CCCATGGATATGCTTCTAGGC	0.428													25	62					0	0	0.004656	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106681008	106681008	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:106681008C>T	uc001pjg.1	-	5	1793	c.1403G>A	c.(1402-1404)AGG>AAG	p.R468K	GUCY1A2_uc010rvo.1_Missense_Mutation_p.R489K|GUCY1A2_uc009yxn.1_Missense_Mutation_p.R468K	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	468					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		TTTATCCATCCTTTTCTTCAA	0.453													11	41					0	0	0.000978	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106849442	106849442	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:106849442G>A	uc001pjg.1	-	3	780	c.390C>T	c.(388-390)TTC>TTT	p.F130F	GUCY1A2_uc010rvo.1_Silent_p.F130F|GUCY1A2_uc009yxn.1_Silent_p.F130F	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	130					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		AGATATTGTGGAAATTCTTTT	0.368													8	18					0	0	0.006214	0	0
ATM	472	broad.mit.edu	37	11	108121577	108121577	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:108121577T>C	uc001pkb.1	+	10	1770	c.1385T>C	c.(1384-1386)GTT>GCT	p.V462A	ATM_uc009yxr.1_Missense_Mutation_p.V462A	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	462					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CTTACGGAAGTTGCATTGTGT	0.403			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			22	52					0	0	0.002780	0	0
EXPH5	23086	broad.mit.edu	37	11	108382902	108382902	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:108382902C>T	uc001pkk.2	-	6	3443	c.3332G>A	c.(3331-3333)AGA>AAA	p.R1111K	EXPH5_uc010rvy.1_Missense_Mutation_p.R923K|EXPH5_uc010rvz.1_Missense_Mutation_p.R955K|EXPH5_uc010rwa.1_Missense_Mutation_p.R1035K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1111					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TGGTCCTTTTCTAACGGAAGT	0.473													17	66					0	0	0.006122	0	0
ZC3H12C	85463	broad.mit.edu	37	11	110036310	110036310	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:110036310T>C	uc009yxw.2	+	6	2551	c.2500T>C	c.(2500-2502)TAT>CAT	p.Y834H	ZC3H12C_uc010rwc.1_Missense_Mutation_p.Y835H|ZC3H12C_uc010rwd.1_Missense_Mutation_p.Y835H|ZC3H12C_uc001pkr.3_Missense_Mutation_p.Y803H	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	834							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		TCCCCCGAGGTATCAAGACAA	0.502													2	8					0	0	0.004672	0	0
NCAM1	4684	broad.mit.edu	37	11	113078089	113078089	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:113078089G>A	uc009yyq.1	+	6	1075	c.381G>A	c.(379-381)ATG>ATA	p.M127I	NCAM1_uc001pno.2_Missense_Mutation_p.M127I	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	245	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		AGCCCACCATGAGCTGGACAA	0.537													15	39					0	0	0.002450	0	0
FAM55D	54827	broad.mit.edu	37	11	114450878	114450878	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:114450878C>T	uc001ppc.2	-	5	1256	c.1075G>A	c.(1075-1077)GAA>AAA	p.E359K	FAM55D_uc001ppd.2_Missense_Mutation_p.E75K	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	359						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		TTGAAGTATTCCATCCACTGG	0.418													25	89					0	0	0.002096	0	0
RNF214	257160	broad.mit.edu	37	11	117152104	117152104	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:117152104T>C	uc001pqt.2	+	9	1265	c.1220T>C	c.(1219-1221)ATG>ACG	p.M407T	RNF214_uc001pqu.2_Missense_Mutation_p.M407T|RNF214_uc010rxf.1_Missense_Mutation_p.M252T	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	407							zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		GTTCGGATAATGAAAAAGAAT	0.433													6	14					0	0	0.001984	0	0
IL10RA	3587	broad.mit.edu	37	11	117864120	117864120	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:117864120T>A	uc001prv.2	+	4	609	c.532T>A	c.(532-534)TTC>ATC	p.F178I	IL10RA_uc010rxl.1_Missense_Mutation_p.F158I|IL10RA_uc010rxm.1_Missense_Mutation_p.F158I|IL10RA_uc010rxn.1_Missense_Mutation_p.F29I|IL10RA_uc001prw.2_Missense_Mutation_p.F29I	NM_001558	NP_001549	Q13651	I10R1_HUMAN	interleukin 10 receptor, alpha precursor	178	Extracellular (Potential).					integral to membrane|plasma membrane	interleukin-10 receptor activity			ovary(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.07e-05)|Epithelial(105;0.00108)		GCCGGGAAACTTCACGGTATG	0.567													13	31					0	0	0.003163	0	0
VPS11	55823	broad.mit.edu	37	11	118948999	118949000	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:118948999_118949000CC>TT	uc010ryx.1	+	12	1920_1921	c.1878_1879CC>TT	c.(1876-1881)CTCCTT>CTTTTT	p.L627F	VPS11_uc010ryy.1_Missense_Mutation_p.L473F	NM_021729	NP_068375	Q9H270	VPS11_HUMAN	vacuolar protein sorting 11	627					protein transport	endocytic vesicle|HOPS complex|late endosome membrane|lysosomal membrane	nucleotide binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.88e-05)		ACGACACACTCCTTGAGCTGCG	0.564													30	99					0	0	0.004672	0	0
ABCG4	64137	broad.mit.edu	37	11	119031730	119031730	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:119031730G>A	uc001pvs.2	+	15	2191	c.1855G>A	c.(1855-1857)GAC>AAC	p.D619N	ABCG4_uc009zar.2_Missense_Mutation_p.D619N	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	619	ABC transmembrane type-2.|Helical; Name=6; (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		GCTCTACATGGACTTCCTGGT	0.597													9	30					0	0	0.006214	0	0
GRIK4	2900	broad.mit.edu	37	11	120732744	120732744	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:120732744C>T	uc001pxn.2	+	9	1108	c.821C>T	c.(820-822)TCC>TTC	p.S274F	GRIK4_uc009zav.1_Missense_Mutation_p.S274F|GRIK4_uc009zaw.1_Missense_Mutation_p.S274F|GRIK4_uc009zax.1_Missense_Mutation_p.S274F	NM_014619	NP_055434	Q16099	GRIK4_HUMAN	glutamate receptor KA1 precursor	274	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|central_nervous_system(1)	3		Breast(109;0.000868)|Medulloblastoma(222;0.0453)|all_neural(223;0.116)|all_hematologic(192;0.21)		BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.116)	L-Glutamic Acid(DB00142)	TTCAACCAATCCCATGCTTTC	0.517													47	138					0	0	0.003214	0	0
APLP2	334	broad.mit.edu	37	11	129998953	129998953	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr11:129998953C>T	uc010sby.1	+	10	1464	c.1307C>T	c.(1306-1308)GCC>GTC	p.A436V	APLP2_uc001qfp.2_Missense_Mutation_p.A436V|APLP2_uc001qfq.2_Missense_Mutation_p.A380V|APLP2_uc010sbz.1_Missense_Mutation_p.A224V|APLP2_uc001qfr.2_Missense_Mutation_p.A202V|APLP2_uc001qfs.2_Missense_Mutation_p.A207V|APLP2_uc001qfv.2_Missense_Mutation_p.A327V	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	436	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		CACTTCCAAGCCATGGTTAAA	0.547													9	19					0	0	0.006214	0	0
ERC1	23085	broad.mit.edu	37	12	1137495	1137495	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:1137495C>T	uc001qjb.2	+	2	667	c.426C>T	c.(424-426)TCC>TCT	p.S142S	ERC1_uc001qiz.2_RNA|ERC1_uc001qjc.2_Silent_p.S142S|ERC1_uc001qja.2_RNA|ERC1_uc001qjd.2_RNA|ERC1_uc001qjf.2_Silent_p.S142S	NM_178040	NP_829884	Q8IUD2	RB6I2_HUMAN	RAB6-interacting protein 2 isoform epsilon	142					I-kappaB phosphorylation|multicellular organismal development|positive regulation of anti-apoptosis|positive regulation of NF-kappaB transcription factor activity|protein transport	Golgi membrane|IkappaB kinase complex|presynaptic membrane	leucine zipper domain binding			ovary(2)|lung(2)|breast(1)	5	all_epithelial(11;0.0698)|Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00239)|BRCA - Breast invasive adenocarcinoma(9;0.0567)			TACCTCACTCCCTTCGTCAGG	0.483													22	46					0	0	0.002299	0	0
EFCAB4B	84766	broad.mit.edu	37	12	3789485	3789485	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:3789485C>T	uc001qmj.2	-	5	831	c.259G>A	c.(259-261)GAG>AAG	p.E87K	EFCAB4B_uc010sen.1_Missense_Mutation_p.E87K|EFCAB4B_uc010seo.1_Missense_Mutation_p.E87K	NM_032680	NP_116069	Q9BSW2	EFC4B_HUMAN	EF-hand calcium binding domain 4B isoform c	87	EF-hand 2.				activation of store-operated calcium channel activity|store-operated calcium entry	cytoplasm	calcium ion binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(31;0.00287)|COAD - Colon adenocarcinoma(12;0.0264)			TCCAGTTCCTCCAGGCTGAGC	0.527													17	24					0	0	0.007413	0	0
GPR162	27239	broad.mit.edu	37	12	6933395	6933395	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:6933395C>T	uc001qqw.1	+	2	866	c.331C>T	c.(331-333)CTC>TTC	p.L111F	GPR162_uc010sfn.1_Missense_Mutation_p.L111F|GPR162_uc001qqx.1_Intron|GPR162_uc009zfd.1_Intron|GPR162_uc001qqy.1_5'Flank	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	111	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGTCGCCTCCCTCTCCTACCA	0.597													18	37					0	0	0.007413	0	0
PRB1	5542	broad.mit.edu	37	12	11506543	11506543	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:11506543C>T	uc001qzw.1	-	4	531	c.494G>A	c.(493-495)GGA>GAA	p.G165E	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	226	9.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGGTTACCTCCTTGTGGGGG	0.612													15	136					0	0	0.004656	0	0
PRB1	5542	broad.mit.edu	37	12	11506726	11506726	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:11506726C>T	uc001qzw.1	-	3	348	c.311G>A	c.(310-312)GGA>GAA	p.G104E	PRB1_uc001qzu.1_Missense_Mutation_p.G104E|PRB1_uc001qzv.1_Missense_Mutation_p.G104E	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	165	6.|15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTGGTTACCTCCTTGTGGGGG	0.622													53	542					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546638	11546638	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:11546638C>T	uc010shk.1	-	3	409	c.374G>A	c.(373-375)GGA>GAA	p.G125E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			CTGGTTGCCTCCTTGTGGGGG	0.612													11	427					0	0	0.004007	0	0
MGP	4256	broad.mit.edu	37	12	15035979	15035979	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:15035979G>A	uc001rcn.1	-	3	200	c.97C>T	c.(97-99)CCC>TCC	p.P33S		NM_000900	NP_000891	P08493	MGP_HUMAN	matrix Gla protein precursor	33					cartilage condensation|cell differentiation|ossification|regulation of bone mineralization	proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent|structural constituent of bone			ovary(1)	1						TTAATGAAGGGATCTTAGAAC	0.368													16	33					0	0	0.006122	0	0
LRRK2	120892	broad.mit.edu	37	12	40653294	40653294	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:40653294G>A	uc001rmg.3	+	13	1552	c.1431G>A	c.(1429-1431)CTG>CTA	p.L477L	LRRK2_uc001rmh.1_Silent_p.L99L	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	477					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ACACTTCCCTGGATATAATGG	0.408													13	33					0	0	0.003163	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43826465	43826465	+	Missense_Mutation	SNP	G	A	A	rs150670741		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:43826465G>A	uc010skx.1	-	20	2870	c.2870C>T	c.(2869-2871)ACC>ATC	p.T957I	ADAMTS20_uc001rno.1_Missense_Mutation_p.T111I|ADAMTS20_uc001rnp.1_Missense_Mutation_p.T111I	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	957	TSP type-1 3.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TAGTTCTTGGGTAGGAGGTTT	0.398													18	37					0	0	0.006122	0	0
CELA1	1990	broad.mit.edu	37	12	51737633	51737633	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:51737633G>A	uc001ryi.1	-	3	145	c.104C>T	c.(103-105)TCC>TTC	p.S35F		NM_001971	NP_001962	Q9UNI1	CELA1_HUMAN	chymotrypsin-like elastase family, member 1	35	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			breast(1)	1						GTACTGGAGGGAAATCTAGAT	0.413													4	3					0	0	0.000248	0	0
GALNT6	11226	broad.mit.edu	37	12	51751177	51751177	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:51751177T>C	uc001ryk.2	-	9	1783	c.1558A>G	c.(1558-1560)AAG>GAG	p.K520E	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.K520E|GALNT6_uc001ryj.1_Missense_Mutation_p.K85E	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	520	Ricin B-type lectin.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						ATGAGGGGCTTCCCCCCGCGG	0.602													15	26					0	0	0.007413	0	0
NR4A1	3164	broad.mit.edu	37	12	52450362	52450362	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:52450362T>G	uc001rzs.2	+	5	1405	c.1091T>G	c.(1090-1092)CTC>CGC	p.L364R	NR4A1_uc010sno.1_Missense_Mutation_p.L377R|NR4A1_uc001rzt.2_Missense_Mutation_p.L364R|NR4A1_uc009zmc.2_Missense_Mutation_p.S7A	NM_002135	NP_002126	P22736	NR4A1_HUMAN	nuclear receptor subfamily 4, group A, member 1	364					nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(357;0.0967)		CCTGCCAATCTCCTCACTTCC	0.627													12	52					0	0	0.001368	0	0
LRP1	4035	broad.mit.edu	37	12	57600328	57600328	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:57600328C>T	uc001snd.2	+	76	12129	c.11663C>T	c.(11662-11664)TCG>TTG	p.S3888L		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	3888	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CACCCCCATTCGGCTTACGAG	0.587													14	28					0	0	0.004007	0	0
PTPRB	5787	broad.mit.edu	37	12	70928384	70928384	+	Silent	SNP	C	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:70928384C>G	uc001swb.3	-	29	5628	c.5598G>C	c.(5596-5598)ACG>ACC	p.T1866T	uc001svz.2_Intron|PTPRB_uc010sto.1_Silent_p.T1776T|PTPRB_uc010stp.1_Silent_p.T1776T|PTPRB_uc001swc.3_Silent_p.T2084T|PTPRB_uc001swa.3_Silent_p.T1996T	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1866	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			CTGGCCACACCGTATAGTGAA	0.517													4	11					0	0	0.001168	0	0
KCNC2	3747	broad.mit.edu	37	12	75444659	75444659	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:75444659G>A	uc001sxg.1	-	3	1670	c.1126C>T	c.(1126-1128)CGA>TGA	p.R376*	KCNC2_uc009zry.2_Nonsense_Mutation_p.R376*|KCNC2_uc001sxe.2_Nonsense_Mutation_p.R376*|KCNC2_uc001sxf.2_Nonsense_Mutation_p.R376*|KCNC2_uc010stw.1_Nonsense_Mutation_p.R376*	NM_139137	NP_631875	Q96PR1	KCNC2_HUMAN	Shaw-related voltage-gated potassium channel	376	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(2)|pancreas(2)|skin(1)|lung(1)	6						GTACTAGCTCGAAGAGTATGT	0.453													7	22					0	0	0.003080	0	0
PLXNC1	10154	broad.mit.edu	37	12	94603446	94603446	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:94603446C>T	uc001tdc.2	+	5	1769	c.1520C>T	c.(1519-1521)CCT>CTT	p.P507L		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	507	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						AAAAAGTGCCCTAAAATTCAG	0.363													29	85					0	0	0.002836	0	0
BTBD11	121551	broad.mit.edu	37	12	108008928	108008928	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:108008928C>T	uc001tmk.1	+	7	2511	c.1990C>T	c.(1990-1992)CCT>TCT	p.P664S	BTBD11_uc009zut.1_Missense_Mutation_p.P664S|BTBD11_uc001tmj.2_Missense_Mutation_p.P664S|BTBD11_uc001tml.1_Missense_Mutation_p.P201S	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	664	ANK 2.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						TGGACATATTCCTGTAGTTCA	0.433													10	18					0	0	0.008291	0	0
CUX2	23316	broad.mit.edu	37	12	111779714	111779715	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:111779714_111779715GG>AA	uc001tsa.1	+	21	3669_3670	c.3516_3517GG>AA	c.(3514-3519)CGGGTG>CGAATG	p.V1173M		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1173	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AGAAGCCCCGGGTGGTGCTGGC	0.663													17	35					0	0	0.004672	0	0
NOS1	4842	broad.mit.edu	37	12	117660623	117660623	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:117660623G>A	uc001twm.1	-	26	4558	c.3872C>T	c.(3871-3873)TCC>TTC	p.S1291F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	1291					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATCTATCTTGGATTGCCGGCA	0.567													26	54					0	0	0.004656	0	0
B3GNT4	79369	broad.mit.edu	37	12	122689220	122689220	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:122689220C>T	uc001ubx.2	+	2	273	c.55C>T	c.(55-57)CTT>TTT	p.L19F	B3GNT4_uc001uby.2_Intron	NM_030765	NP_110392	Q9C0J1	B3GN4_HUMAN	UDP-GlcNAc:betaGal	19	Cytoplasmic (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000297)|Epithelial(86;0.000497)|BRCA - Breast invasive adenocarcinoma(302;0.222)		TAGGAGTGGCCTTTTACCAAA	0.557													4	24					0	0	0.000248	0	0
ATP8A2	51761	broad.mit.edu	37	13	26163813	26163813	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr13:26163813C>T	uc001uqk.2	+	24	2329	c.2187C>T	c.(2185-2187)ATC>ATT	p.I729I	ATP8A2_uc010tdi.1_Silent_p.I689I|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc010aaj.1_Silent_p.I239I	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	689	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		TGGCCCTTATCCTATTGAAGG	0.368													17	58					0	0	0.008871	0	0
TSC22D1	8848	broad.mit.edu	37	13	45148287	45148287	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr13:45148287G>A	uc001uzn.3	-	1	2415	c.1924C>T	c.(1924-1926)CCA>TCA	p.P642S	TSC22D1_uc001uzo.1_Intron	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	642	Gln-rich.				transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		ACATGGCCTGGGGCCATCTGT	0.522													29	95					0	0	0.002445	0	0
LRCH1	23143	broad.mit.edu	37	13	47224445	47224445	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr13:47224445C>T	uc001vbj.2	+	2	653	c.417C>T	c.(415-417)ATC>ATT	p.I139I	LRCH1_uc010acp.2_Silent_p.I139I|LRCH1_uc001vbk.2_Silent_p.I139I|LRCH1_uc001vbl.3_Silent_p.I139I	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	139	LRR 2.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		CTGAGGCCATCGTTAATCTGC	0.343													6	17					0	0	0.001168	0	0
OLFM4	10562	broad.mit.edu	37	13	53603031	53603031	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr13:53603031G>A	uc001vhl.2	+	1	60	c.60G>A	c.(58-60)GGG>GGA	p.G20G	OLFM4_uc001vhk.1_Silent_p.G20G	NM_006418	NP_006409	Q6UX06	OLFM4_HUMAN	olfactomedin 4 precursor	20					cell adhesion	extracellular space				skin(1)	1		Breast(56;0.000776)|Lung NSC(96;0.000814)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.13e-08)		AAGCTGCAGGGGATTTGGGGG	0.483													33	95					0	0	0.003755	0	0
SLC15A1	6564	broad.mit.edu	37	13	99358482	99358482	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr13:99358482C>T	uc001vno.2	-	16	1252	c.1175G>A	c.(1174-1176)GGA>GAA	p.G392E		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	392	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	GACTTCGTTTCCTTTGGGGAA	0.388													7	15					0	0	0.003080	0	0
MYO16	23026	broad.mit.edu	37	13	109365058	109365058	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr13:109365058G>A	uc001vqt.1	+	3	402	c.276G>A	c.(274-276)TCG>TCA	p.S92S	MYO16_uc010agk.1_Silent_p.S114S	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	92	ANK 2.				cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TCGTCTCCTCGGGAGGGTCCC	0.572													20	43					0	0	0.002780	0	0
TMCO3	55002	broad.mit.edu	37	13	114201629	114201630	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr13:114201629_114201630CC>TT	uc001vtu.3	+	11	2066_2067	c.1705_1706CC>TT	c.(1705-1707)CCC>TTC	p.P569F		NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	569	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			CCACGTGTTCCCCACGTTTGTG	0.574													6	28					0	0	0.004672	0	0
OR4K14	122740	broad.mit.edu	37	14	20483272	20483272	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:20483272G>A	uc010tky.1	-	1	81	c.81C>T	c.(79-81)TTC>TTT	p.F27F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		AAAATATAAAGAAAAAATTTT	0.423													6	14					0	0	0.001168	0	0
OR4E2	26686	broad.mit.edu	37	14	22133327	22133327	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:22133327G>A	uc010tmd.1	+	1	31	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_001001912	NP_001001912	Q8NGC2	OR4E2_HUMAN	olfactory receptor, family 4, subfamily E,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0137)		AAGAGTGACTGAATTTGTCTT	0.368													22	62					0	0	0.002780	0	0
MYH6	4624	broad.mit.edu	37	14	23858677	23858677	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:23858677C>T	uc001wjv.2	-	28	3970	c.3903G>A	c.(3901-3903)TCG>TCA	p.S1301S	uc010tnn.1_5'Flank|MIR208A_hsa-mir-208a|MI0000251_5'Flank	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	1301	Potential.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GGGTCAGCTGCGAGATTAGCG	0.602													19	39					0	0	0.007413	0	0
TM9SF1	10548	broad.mit.edu	37	14	24658688	24658688	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:24658688C>T	uc001wnb.1	-	6	2102	c.1754G>A	c.(1753-1755)GGC>GAC	p.G585D	IPO4_uc001wmu.2_5'Flank|IPO4_uc001wmv.1_5'Flank|IPO4_uc001wmx.1_5'UTR|IPO4_uc001wmy.1_5'UTR|IPO4_uc010tnz.1_RNA|IPO4_uc001wmw.1_RNA|IPO4_uc001wmz.1_5'UTR|TM9SF1_uc010toa.1_Missense_Mutation_p.G498D|TM9SF1_uc001wna.1_RNA|TM9SF1_uc010tob.1_Missense_Mutation_p.G820D	NM_006405	NP_006396	O15321	TM9S1_HUMAN	transmembrane 9 superfamily member 1 isoform a	585	Helical; (Potential).				autophagy	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane|lysosomal membrane				ovary(1)	1				GBM - Glioblastoma multiforme(265;0.0183)		GGAGATGGTGCCCAGCATGAG	0.458													19	40					0	0	0.001523	0	0
LTBP2	4053	broad.mit.edu	37	14	74967592	74967592	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:74967592C>T	uc001xqa.2	-	36	5848	c.5461G>A	c.(5461-5463)GAG>AAG	p.E1821K		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1821					protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		GACTGCTACTCCTTGGCAGTG	0.602													19	39					0	0	0.008871	0	0
ALKBH1	8846	broad.mit.edu	37	14	78174266	78174266	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:78174266G>A	uc001xuc.1	-	1	91	c.82C>T	c.(82-84)CGC>TGC	p.R28C	ALKBH1_uc001xud.1_RNA|C14orf156_uc001xue.3_5'Flank	NM_006020	NP_006011	Q13686	ALKB1_HUMAN	alkylated DNA repair protein alkB homolog	28					DNA dealkylation involved in DNA repair|DNA demethylation|oxidative demethylation|RNA repair	mitochondrion	DNA-(apurinic or apyrimidinic site) lyase activity|ferrous iron binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(1)|skin(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		CGGTAGAAGCGGAAAAGTTTC	0.662													13	38					0	0	0.003163	0	0
SMEK1	55671	broad.mit.edu	37	14	91927910	91927910	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:91927910G>A	uc001xzn.2	-	14	3028	c.2206C>T	c.(2206-2208)CTT>TTT	p.L736F	SMEK1_uc001xzm.2_Missense_Mutation_p.L723F|SMEK1_uc001xzo.2_Missense_Mutation_p.L723F|SMEK1_uc010atz.2_Missense_Mutation_p.L497F	NM_032560	NP_115949	Q6IN85	P4R3A_HUMAN	SMEK homolog 1, suppressor of mek1	736						microtubule organizing center|nucleus	protein binding				0		all_cancers(154;0.0691)|all_epithelial(191;0.219)		COAD - Colon adenocarcinoma(157;0.221)		CGTCCAGAAAGGTTTGTTTTC	0.428													36	95					0	0	0.004878	0	0
C14orf109	26175	broad.mit.edu	37	14	93653003	93653003	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:93653003T>C	uc010auo.2	+	2	855	c.497T>C	c.(496-498)CTG>CCG	p.L166P	MOAP1_uc001ybj.2_5'Flank|C14orf109_uc001ybk.3_Missense_Mutation_p.L128P	NM_001098621	NP_001092091	Q8N6I4	CN109_HUMAN	hypothetical protein LOC26175 isoform 1	160						integral to membrane					0		all_cancers(154;0.11)|Acute lymphoblastic leukemia(33;0.0488)		Epithelial(152;0.176)|all cancers(159;0.197)|COAD - Colon adenocarcinoma(157;0.202)		AGACTACAACTGATTGACACG	0.423													26	62					0	0	0.006320	0	0
Unknown	0	broad.mit.edu	37	14	101522564	101522564	+	RNA	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:101522564G>A	hsa-mir-323b|MI0014206	+			c.9G>A																										CATGGTACTCGGAGGGAGGTT	0.552													8	20					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	107062318	107062318	+	RNA	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:107062318C>T	uc010tyt.1	-	131		c.6277G>A								Parts of antibodies, mostly variable regions.												0						GACCCAGATTCACCAGTTACC	0.597													9	23					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	107170163	107170163	+	RNA	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr14:107170163G>A	uc010tyt.1	-	39		c.2624C>T								Parts of antibodies, mostly variable regions.												0						AGCCTTGCAGGAGACCTTCAC	0.592													10	37					0	0	0.008291	0	0
MAGEL2	54551	broad.mit.edu	37	15	23890456	23890456	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:23890456C>G	uc001ywj.3	-	1	720	c.625G>C	c.(625-627)GAG>CAG	p.E209Q		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		TTTGGGGTCTCTGAGGCAGCA	0.567													12	61					0	0	0.001368	0	0
C15orf55	256646	broad.mit.edu	37	15	34647303	34647303	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:34647303G>A	uc001zif.2	+	6	1515	c.1360G>A	c.(1360-1362)GAG>AAG	p.E454K	C15orf55_uc010ucc.1_Missense_Mutation_p.E482K|C15orf55_uc010ucd.1_Missense_Mutation_p.E472K	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	454						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CTTAATTGAGGAGCTAGAGCA	0.453			T	BRD3|BRD4	lethal midline carcinoma								22	65					0	0	0.002780	0	0
DLL4	54567	broad.mit.edu	37	15	41228536	41228536	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:41228536C>T	uc001zng.1	+	9	1671	c.1351C>T	c.(1351-1353)CAC>TAC	p.H451Y		NM_019074	NP_061947	Q9NR61	DLL4_HUMAN	delta-like 4 protein precursor	451	EGF-like 7.|Extracellular (Potential).				blood circulation|cell communication|cell differentiation|Notch receptor processing|Notch signaling pathway	integral to membrane|plasma membrane	calcium ion binding|Notch binding			breast(2)	2		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		CCCTTGCGCCCACGGTGGCAC	0.637													4	10					0	0	0.000248	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43873490	43873490	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:43873490G>A	uc001zrw.2	-	9	1057	c.874C>T	c.(874-876)CGA>TGA	p.R292*	PPIP5K1_uc001zrx.1_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zru.2_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zry.3_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zrv.2_Nonsense_Mutation_p.R292*|PPIP5K1_uc001zrz.1_Nonsense_Mutation_p.R292*|PPIP5K1_uc010udr.1_Nonsense_Mutation_p.R292*	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	292					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						ACTGGATATCGAATCTCTTTC	0.512													33	98					0	0	0.004289	0	0
CGNL1	84952	broad.mit.edu	37	15	57731224	57731224	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:57731224C>T	uc002aeg.2	+	2	1103	c.1027C>T	c.(1027-1029)CGG>TGG	p.R343W	CGNL1_uc010bfw.2_Missense_Mutation_p.R343W	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	343	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGGAACTGGACGGGATATTGA	0.438													9	33					0	0	0.004482	0	0
GCNT3	9245	broad.mit.edu	37	15	59911499	59911499	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:59911499C>T	uc002age.2	+	3	1511	c.1062C>T	c.(1060-1062)ATC>ATT	p.I354I	GCNT3_uc002agd.2_Silent_p.I354I	NM_004751	NP_004742	O95395	GCNT3_HUMAN	glucosaminyl (N-acetyl) transferase 3, mucin	354	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|membrane fraction	beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity|N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity			ovary(1)|central_nervous_system(1)	2						AGTACGACATCTCAGACATGA	0.552													21	63					0	0	0.001523	0	0
NOX5	79400	broad.mit.edu	37	15	69328262	69328262	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:69328262A>G	uc002ars.1	+	7	1194	c.1174A>G	c.(1174-1176)AGT>GGT	p.S392G	NOX5_uc002arp.1_Missense_Mutation_p.S374G|NOX5_uc002arq.1_Missense_Mutation_p.S346G|NOX5_uc010bid.1_Missense_Mutation_p.S357G|NOX5_uc002arr.1_Missense_Mutation_p.S364G|NOX5_uc010bie.1_Missense_Mutation_p.S192G|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	392	Ferric oxidoreductase.|Cytoplasmic (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						CATCCGCAGGAGTGGCCACTT	0.577													13	34					0	0	0.001855	0	0
GLCE	26035	broad.mit.edu	37	15	69561424	69561424	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:69561424C>T	uc002ary.1	+	5	1923	c.1695C>T	c.(1693-1695)TTC>TTT	p.F565F		NM_015554	NP_056369	O94923	GLCE_HUMAN	D-glucuronyl C5-epimerase	565	Lumenal (Potential).				heparan sulfate proteoglycan biosynthetic process|heparin biosynthetic process	Golgi membrane|integral to membrane	UDP-glucuronate 5'-epimerase activity			ovary(2)	2						TCCGTCACTTCATGCTTGGCA	0.502													38	68					0	0	0.006230	0	0
AGBL1	123624	broad.mit.edu	37	15	86697787	86697787	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr15:86697787C>T	uc002blz.1	+	3	331	c.251C>T	c.(250-252)TCC>TTC	p.S84F		NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	84					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						GTGTTTGCCTCCAGTGGTAAG	0.522													6	16					0	0	0.003080	0	0
TBL3	10607	broad.mit.edu	37	16	2025386	2025386	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:2025386C>T	uc002cnu.1	+	9	854	c.752C>T	c.(751-753)TCC>TTC	p.S251F	TBL3_uc002cnv.1_Missense_Mutation_p.S137F|TBL3_uc010bsb.1_Missense_Mutation_p.S40F|TBL3_uc010bsc.1_Missense_Mutation_p.S137F|TBL3_uc010uvt.1_5'UTR|TBL3_uc002cnw.1_5'Flank	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	251	WD 5.				G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						GAGCCAGTGTCCCAGCTGGGT	0.637													25	62					0	0	0.006320	0	0
A2BP1	54715	broad.mit.edu	37	16	7629803	7629803	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:7629803G>A	uc002cys.2	+	6	1283	c.295G>A	c.(295-297)GAT>AAT	p.D99N	A2BP1_uc010buf.1_Missense_Mutation_p.D99N|A2BP1_uc002cyr.1_Missense_Mutation_p.D98N|A2BP1_uc002cyt.2_Missense_Mutation_p.D99N|A2BP1_uc010uxz.1_Missense_Mutation_p.D142N|A2BP1_uc010uya.1_Intron|A2BP1_uc002cyv.1_Missense_Mutation_p.D99N|A2BP1_uc010uyb.1_Missense_Mutation_p.D99N|A2BP1_uc002cyw.2_Missense_Mutation_p.D119N|A2BP1_uc002cyy.2_Missense_Mutation_p.D119N|A2BP1_uc002cyx.2_Missense_Mutation_p.D119N|A2BP1_uc010uyc.1_Missense_Mutation_p.D119N	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	99					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		AGCACCGACGGATGGCCAGCC	0.527													9	44					0	0	0.004482	0	0
DNAH3	55567	broad.mit.edu	37	16	20976479	20976479	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:20976479C>T	uc010vbe.1	-	53	8727	c.8727G>A	c.(8725-8727)AGG>AGA	p.R2909R	DNAH3_uc010vbd.1_Silent_p.R344R	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2909	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CCTCTGCCTCCCTCAGTCGCT	0.602													32	105					0	0	0.002836	0	0
CDR2	1039	broad.mit.edu	37	16	22358818	22358818	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:22358818G>A	uc002dkn.2	-	5	1141	c.833C>T	c.(832-834)TCT>TTT	p.S278F		NM_001802	NP_001793	Q01850	CDR2_HUMAN	cerebellar degeneration-related protein 2	278						nucleus	protein binding			skin(1)	1				GBM - Glioblastoma multiforme(48;0.0188)		AACATACAGAGAGTCTGGCAC	0.542													7	21					0	0	0.003080	0	0
NSMCE1	197370	broad.mit.edu	37	16	27238100	27238100	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:27238100G>A	uc002doi.1	-	6	639	c.541C>T	c.(541-543)CGG>TGG	p.R181W	NSMCE1_uc002doj.1_RNA	NM_145080	NP_659547	Q8WV22	NSE1_HUMAN	non-SMC element 1 homolog	181					DNA recombination|DNA repair|intracellular signal transduction	nucleus	zinc ion binding				0						TACGTCTCCCGGATGTATTGC	0.637													18	58					0	0	0.006122	0	0
NLRC5	84166	broad.mit.edu	37	16	57101676	57101676	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:57101676G>A	uc002ekk.1	+	36	4660	c.4435G>A	c.(4435-4437)GAT>AAT	p.D1479N	NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekq.1_Missense_Mutation_p.D21N|NLRC5_uc002ekr.1_Missense_Mutation_p.D366N	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1479	LRR 15.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				CTGTGAGGACGATGATGCCAG	0.507													15	48					0	0	0.003163	0	0
CDH8	1006	broad.mit.edu	37	16	61687599	61687599	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:61687599C>T	uc002eog.1	-	12	2565	c.2313G>A	c.(2311-2313)CAG>CAA	p.Q771Q		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	771	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		AGTCAAAATTCTGGTCTGAGT	0.502													5	22					0	0	0.001168	0	0
PDP2	57546	broad.mit.edu	37	16	66918814	66918814	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:66918814C>T	uc002eqk.1	+	2	789	c.627C>T	c.(625-627)CTC>CTT	p.L209L		NM_020786	NP_065837	Q9P2J9	PDP2_HUMAN	pyruvate dehydrogenase phosphatase isoenzyme 2	209					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|protein serine/threonine phosphatase complex	[pyruvate dehydrogenase (lipoamide)] phosphatase activity|metal ion binding			ovary(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.088)|Epithelial(162;0.204)		TTGACCACCTCCGTGTCTATT	0.473													20	36					0	0	0.007413	0	0
PMFBP1	83449	broad.mit.edu	37	16	72166868	72166868	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:72166868A>C	uc002fcc.3	-	10	1398	c.1226T>G	c.(1225-1227)ATG>AGG	p.M409R	PMFBP1_uc002fcd.2_Missense_Mutation_p.M409R|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.M264R	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	409	Potential.									ovary(2)	2		Ovarian(137;0.179)				CTCTTGCAGCATCTCATCTTT	0.483													18	57					0	0	0.008871	0	0
KCNG4	93107	broad.mit.edu	37	16	84256066	84256066	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr16:84256066G>A	uc010voc.1	-	3	1438	c.1317C>T	c.(1315-1317)ATC>ATT	p.I439I		NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	439	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						TCCCGCTCAGGATGCTGCTGA	0.617													23	47					0	0	0.002780	0	0
OR1E1	8387	broad.mit.edu	37	17	3301484	3301484	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:3301484G>A	uc002fvj.1	-	1	221	c.221C>T	c.(220-222)TCT>TTT	p.S74F		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGTCACGGAAGAGAAGCAGAG	0.488													17	28					0	0	0.004007	0	0
PLD2	5338	broad.mit.edu	37	17	4711613	4711613	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:4711613C>T	uc002fzc.2	+	4	386	c.285C>T	c.(283-285)GAC>GAT	p.D95D	PLD2_uc010vsj.1_5'UTR|PLD2_uc002fzd.2_Silent_p.D95D	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	95	PX.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	CTCACGGCGACTTTTCCTGGA	0.552													53	120					0	0	0.003610	0	0
DNAH2	146754	broad.mit.edu	37	17	7701005	7701005	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:7701005C>T	uc002giu.1	+	52	8102	c.8088C>T	c.(8086-8088)TTC>TTT	p.F2696F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2696					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CAGGGGATTTCCTGAAGGAGC	0.542													19	62					0	0	0.008871	0	0
MYH2	4620	broad.mit.edu	37	17	10436645	10436645	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:10436645C>T	uc010coi.2	-	21	2526	c.2398G>A	c.(2398-2400)GGG>AGG	p.G800R	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G800R|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	800	IQ.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCCAAGAACCCTCTGCACCTG	0.458													26	53					0	0	0.007291	0	0
FLCN	201163	broad.mit.edu	37	17	17120420	17120420	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:17120420T>A	uc002gra.3	-	10	1643	c.1139A>T	c.(1138-1140)GAC>GTC	p.D380V	PLD6_uc010cpn.2_RNA	NM_144997	NP_659434	Q8NFG4	FLCN_HUMAN	folliculin isoform 1	380					regulation of protein phosphorylation	cytoplasm|nucleus|plasma membrane	protein binding			thyroid(1)|haematopoietic_and_lymphoid_tissue(1)|lung(1)	3						GAGGTCCACGTCTCTGCTTTT	0.557									Birt-Hogg-Dub__syndrome|Familial_Non-VHL_Clear_Cell_Renal_Cancer				7	16					0	0	0.003080	0	0
TOM1L2	146691	broad.mit.edu	37	17	17769636	17769636	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:17769636G>A	uc002grz.3	-	10	1215	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	TOM1L2_uc002gry.3_Missense_Mutation_p.S303F|TOM1L2_uc010vwy.1_Missense_Mutation_p.S300F|TOM1L2_uc010cpr.2_Missense_Mutation_p.S308F|TOM1L2_uc010vwz.1_Missense_Mutation_p.S205F|TOM1L2_uc010vxa.1_Missense_Mutation_p.S255F|TOM1L2_uc002grv.3_Missense_Mutation_p.S86F	NM_001082968	NP_001076437	Q6ZVM7	TM1L2_HUMAN	target of myb1-like 2 isoform 3	353					intracellular protein transport	intracellular					0	all_neural(463;0.228)					GGAGGAGAGGGAAGATGGGGG	0.572													4	13					0	0	0.001168	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319580	21319580	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:21319580C>T	uc002gyv.1	+	3	1631	c.926C>T	c.(925-927)ACC>ATC	p.T309I		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	309	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	ACAGCCATGACCACCCAGGCC	0.607										Prostate(3;0.18)			10	95					0	0	0.006214	0	0
CCL13	6357	broad.mit.edu	37	17	32684565	32684565	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:32684565A>C	uc002hic.2	+	2	223	c.148A>C	c.(148-150)AGC>CGC	p.S50R		NM_005408	NP_005399	Q99616	CCL13_HUMAN	small inducible cytokine A13 precursor	50					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response	extracellular space	chemokine activity|signal transducer activity				0		Ovarian(249;0.0443)|Breast(31;0.151)				GAGGCTGAAGAGCTATGTGAT	0.483													41	108					0	0	0.003610	0	0
THRA	7067	broad.mit.edu	37	17	38242991	38242991	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:38242991C>T	uc002htw.2	+	7	1091	c.608C>T	c.(607-609)TCC>TTC	p.S203F	THRA_uc010cwp.1_Missense_Mutation_p.S203F|THRA_uc002htv.2_Missense_Mutation_p.S203F|THRA_uc002htx.2_Missense_Mutation_p.S203F	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	203	Ligand-binding.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	CCCATTGTCTCCATGCCGGAC	0.592											OREG0024390	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	19					0	0	0.008291	0	0
KRT222	125113	broad.mit.edu	37	17	38816255	38816255	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:38816255C>T	uc002hvc.2	-	3	495	c.430G>A	c.(430-432)GAA>AAA	p.E144K	KRT222_uc010wfk.1_RNA|KRT222_uc002hvb.2_Missense_Mutation_p.E104K|KRT222_uc010cxc.2_Missense_Mutation_p.E104K	NM_152349	NP_689562	Q8N1A0	KT222_HUMAN	truncated type I keratin KA21	144	Potential.					intermediate filament	structural molecule activity			central_nervous_system(1)|skin(1)	2						TCTTCTTTTTCTAGGAGGTGG	0.423													17	71					0	0	0.007413	0	0
ITGA2B	3674	broad.mit.edu	37	17	42457090	42457090	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:42457090G>A	uc002igt.1	-	18	1877	c.1845C>T	c.(1843-1845)GTC>GTT	p.V615V	ITGA2B_uc002igu.1_Silent_p.V96V	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	615	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	CATGCAGCACGACAGCAGGGG	0.602													35	86					0	0	0.003271	0	0
HOXB5	3215	broad.mit.edu	37	17	46669679	46669679	+	Silent	SNP	G	A	A	rs140096647		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:46669679G>A	uc002inr.2	-	2	761	c.702C>T	c.(700-702)TCC>TCT	p.S234S	HOXB3_uc010wlm.1_5'Flank|HOXB3_uc010dbf.2_5'Flank|HOXB3_uc010dbg.2_5'Flank	NM_002147	NP_002138	P09067	HXB5_HUMAN	homeobox B5	234	Homeobox.					nucleus	sequence-specific DNA binding				0						TCTGGCGCTCGGACAGGCAGA	0.577													29	77					0	0	0.006320	0	0
UTP18	51096	broad.mit.edu	37	17	49338083	49338083	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:49338083C>T	uc002its.2	+	1	187	c.138C>T	c.(136-138)TCC>TCT	p.S46S	MBTD1_uc002itr.3_5'Flank|MBTD1_uc002itq.3_5'Flank	NM_016001	NP_057085	Q9Y5J1	UTP18_HUMAN	UTP18, small subunit processome component	46					rRNA processing	nucleolus					0			BRCA - Breast invasive adenocarcinoma(22;2.09e-07)			CCCCTTCATCCCAGCGGAAAc	0.592													3	6					0	0	0.004672	0	0
INTS2	57508	broad.mit.edu	37	17	59989344	59989344	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:59989344C>T	uc002izn.2	-	6	837	c.761G>A	c.(760-762)TGT>TAT	p.C254Y	INTS2_uc002izm.2_Missense_Mutation_p.C246Y	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2	254					snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						ATTCATTTTACACAAGAAGCG	0.433													37	107					0	0	0.004878	0	0
SCN4A	6329	broad.mit.edu	37	17	62026783	62026783	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:62026783C>T	uc002jds.1	-	15	3036	c.2959G>A	c.(2959-2961)GGG>AGG	p.G987R		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	987					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GGCTGCTCCCCCTCGGGGTTC	0.657													4	4					0	0	0.000248	0	0
CD300C	10871	broad.mit.edu	37	17	72537788	72537788	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:72537788C>T	uc002jky.1	-	4	976	c.615G>A	c.(613-615)GTG>GTA	p.V205V		NM_006678	NP_006669	Q08708	CLM6_HUMAN	CD300C antigen precursor	205	Cytoplasmic (Potential).				cellular defense response	integral to plasma membrane	transmembrane receptor activity				0						GAGGTCTGTTCACCCAGAGGA	0.597													11	28					0	0	0.000978	0	0
EVPL	2125	broad.mit.edu	37	17	74004714	74004714	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:74004714G>A	uc002jqi.2	-	22	4800	c.4572C>T	c.(4570-4572)ATC>ATT	p.I1524I	EVPL_uc010wss.1_Silent_p.I1546I|EVPL_uc010wst.1_Silent_p.I994I	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1524	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TCTGCACCCGGATCACTTCCT	0.617													20	41					0	0	0.001523	0	0
TNRC6C	57690	broad.mit.edu	37	17	76060883	76060883	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:76060883C>T	uc002jud.2	+	5	3076	c.2476C>T	c.(2476-2478)CTG>TTG	p.L826L	TNRC6C_uc002juf.2_Silent_p.L823L|TNRC6C_uc002jue.2_Silent_p.L823L	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	826	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CCCTTCTACCCTGGTGGATAA	0.562													6	20					0	0	0.004482	0	0
FLJ35220	284131	broad.mit.edu	37	17	78399410	78399410	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:78399410C>T	uc002jym.1	+	7	732	c.704C>T	c.(703-705)CCC>CTC	p.P235L	FLJ35220_uc002jyk.2_Missense_Mutation_p.P190L|FLJ35220_uc002jyl.1_Missense_Mutation_p.P190L|FLJ35220_uc002jyn.2_Missense_Mutation_p.P41L	NM_173627	NP_775898	Q8N8Q3	ENDOV_HUMAN	hypothetical protein LOC284131 isoform 1	235					DNA repair		endodeoxyribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding				0	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0487)			ATCCCAGAGCCCGTGCGCCAG	0.682								Direct_reversal_of_damage|Editing_and_processing_nucleases					3	5					0	0	0.000248	0	0
MYOM1	8736	broad.mit.edu	37	18	3187585	3187585	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr18:3187585G>A	uc002klp.2	-	5	1156	c.822C>T	c.(820-822)CTC>CTT	p.L274L	MYOM1_uc002klq.2_Silent_p.L274L	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	274						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CAGGAGCATGGAGAAGATGGT	0.408													10	22					0	0	0.006214	0	0
POTEC	388468	broad.mit.edu	37	18	14542672	14542672	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr18:14542672G>A	uc010dln.2	-	1	928	c.474C>T	c.(472-474)ATC>ATT	p.I158I	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	158	ANK 1.									skin(3)	3						TGAGCATGACGATGAGATCCT	0.582													26	88					0	0	0.007291	0	0
TCEB3C	162699	broad.mit.edu	37	18	44554652	44554652	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr18:44554652C>T	uc010xdb.1	-	1	1798	c.1562G>A	c.(1561-1563)CGA>CAA	p.R521Q	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	521					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						AGCCTGTTTTCGGGTTTTGTc	0.353													10	339					0	0	0.003163	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560939	44560939	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr18:44560939C>T	uc002lcr.1	-	1	1050	c.697G>A	c.(697-699)GAA>AAA	p.E233K	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	233					regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GGGCGTTTTTCCTGGCGAGAC	0.617													9	17					0	0	0.004482	0	0
DCC	1630	broad.mit.edu	37	18	50936913	50936913	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr18:50936913C>T	uc002lfe.1	+	20	3614	c.3027C>T	c.(3025-3027)ATC>ATT	p.I1009I	DCC_uc010xdr.1_Silent_p.I837I|DCC_uc010dpf.1_Silent_p.I644I	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1009	Extracellular (Potential).|Fibronectin type-III 6.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTCATCAAATCATGGATCTCA	0.388													24	45					0	0	0.003954	0	0
RNF152	220441	broad.mit.edu	37	18	59483414	59483414	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr18:59483414G>A	uc002lih.1	-	2	695	c.283C>T	c.(283-285)CCC>TCC	p.P95S		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	95					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				CCATTGCTGGGAAGTTTGATG	0.647													7	27					0	0	0.003080	0	0
AP3D1	8943	broad.mit.edu	37	19	2117228	2117228	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:2117228G>A	uc002luz.2	-	16	2075	c.1852C>T	c.(1852-1854)CCC>TCC	p.P618S	AP3D1_uc002luy.2_Missense_Mutation_p.P527S|AP3D1_uc002lva.2_Missense_Mutation_p.P618S	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	618					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TACCCTTCGGGGACTGGAACC	0.637													3	13					0	0	0.004672	0	0
SF3A2	8175	broad.mit.edu	37	19	2247809	2247809	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:2247809C>T	uc002lvg.2	+	9	781	c.659C>T	c.(658-660)CCA>CTA	p.P220L	AMH_uc002lvh.2_5'Flank|hsa-mir-4321|MI0015852_5'Flank	NM_007165	NP_009096	Q15428	SF3A2_HUMAN	splicing factor 3a, subunit 2	220	Pro-rich.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex	nucleic acid binding|zinc ion binding				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCCCCGGCTCCACCCAGCCTC	0.662													11	48					0	0	0.001368	0	0
ACSBG2	81616	broad.mit.edu	37	19	6147623	6147623	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:6147623G>A	uc002mef.1	+	3	461	c.234G>A	c.(232-234)TGG>TGA	p.W78*	ACSBG2_uc002mee.1_5'UTR|ACSBG2_uc002meg.1_Nonsense_Mutation_p.W78*|ACSBG2_uc002meh.1_Nonsense_Mutation_p.W78*|ACSBG2_uc002mei.1_Nonsense_Mutation_p.W28*|ACSBG2_uc010xiz.1_Nonsense_Mutation_p.W78*	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	78					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						GCAAAAAGTGGGAAATTCTGA	0.388													42	89					0	0	0.003610	0	0
TNFSF14	8740	broad.mit.edu	37	19	6665305	6665305	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:6665305C>T	uc002mfk.1	-	5	737	c.355G>A	c.(355-357)GGC>AGC	p.G119S	TNFSF14_uc002mfj.1_Missense_Mutation_p.G83S	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	119	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						AAGGCCAGGCCCAGCTGAGTC	0.627													6	11					0	0	0.001168	0	0
XAB2	56949	broad.mit.edu	37	19	7692201	7692201	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:7692201G>A	uc002mgx.2	-	4	476	c.450C>T	c.(448-450)CCC>CCT	p.P150P	uc010dvi.1_5'Flank	NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	150	HAT 4.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						GCAGATACAGGGGCCAAATTC	0.652								Direct_reversal_of_damage|NER					6	19					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9085264	9085264	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:9085264G>A	uc002mkp.2	-	1	6755	c.6551C>T	c.(6550-6552)TCC>TTC	p.S2184F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2184	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGGGCAGGGATATTGTCCT	0.448													9	18					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9089115	9089115	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:9089115G>A	uc002mkp.2	-	1	2904	c.2700C>T	c.(2698-2700)ACC>ACT	p.T900T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	900	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTGTCCATGGTGGGGAATA	0.512													7	15					0	0	0.001984	0	0
ZNF121	7675	broad.mit.edu	37	19	9677528	9677529	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:9677528_9677529GG>AA	uc010xkp.1	-	4	492_493	c.260_261CC>TT	c.(259-261)TCC>TTT	p.S87F	ZNF121_uc010dwt.2_Missense_Mutation_p.S87F|ZNF121_uc010xkq.1_Missense_Mutation_p.S87F	NM_001008727	NP_001008727	P58317	ZN121_HUMAN	zinc finger protein 121	87					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGTATTCAAAGGATTTGTCTCC	0.446													5	44					0	0	0.004672	0	0
FBXL12	54850	broad.mit.edu	37	19	9921871	9921871	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:9921871G>A	uc002mme.2	-	3	924	c.682C>T	c.(682-684)CGA>TGA	p.R228*	FBXL12_uc002mmd.2_Nonsense_Mutation_p.R175*|FBXL12_uc002mmf.2_Nonsense_Mutation_p.R175*|FBXL12_uc002mmg.2_Nonsense_Mutation_p.R175*|FBXL12_uc002mmh.2_Nonsense_Mutation_p.R175*	NM_017703	NP_060173	Q9NXK8	FXL12_HUMAN	F-box and leucine-rich repeat protein 12	228	LRR 6.						protein binding			lung(1)|kidney(1)	2						CGCACATCTCGGAGGTGGCGG	0.672													4	21					0	0	0.000248	0	0
MRPL4	51073	broad.mit.edu	37	19	10370360	10370361	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:10370360_10370361GG>AA	uc002mnm.2	+	10	961_962	c.807_808GG>AA	c.(805-810)CTGGAG>CTAAAG	p.E270K	MRPL4_uc002mnn.2_Missense_Mutation_p.E270K|MRPL4_uc002mno.2_3'UTR	NM_146387	NP_666499	Q9BYD3	RM04_HUMAN	mitochondrial ribosomal protein L4 isoform a	270					translation	mitochondrion|ribosome	structural constituent of ribosome			ovary(1)	1		Renal(1328;0.0112)	OV - Ovarian serous cystadenocarcinoma(20;1.39e-09)|Epithelial(33;1.99e-06)|all cancers(31;4.81e-06)	Lung(535;0.00705)		TCGCCTTCCTGGAGGACAAGCT	0.535													7	15					0	0	0.004672	0	0
OR10H4	126541	broad.mit.edu	37	19	16060754	16060754	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:16060754C>T	uc010xov.1	+	1	937	c.937C>T	c.(937-939)CCT>TCT	p.P313S		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	313	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AAAATTCTGTCCTCCAAGTTC	0.393													7	22					0	0	0.001984	0	0
NWD1	284434	broad.mit.edu	37	19	16875863	16875863	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:16875863C>T	uc002neu.3	+	10	2692	c.2270C>T	c.(2269-2271)TCC>TTC	p.S757F	NWD1_uc002net.3_Missense_Mutation_p.S622F|NWD1_uc002nev.3_Missense_Mutation_p.S551F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	757							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						AGCTGGATTTCCTGCCGGGGC	0.597													14	31					0	0	0.006122	0	0
APLP1	333	broad.mit.edu	37	19	36370283	36370283	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:36370283C>T	uc002oce.2	+	17	2031	c.1893C>T	c.(1891-1893)CGC>CGT	p.R631R	APLP1_uc010xsz.1_Silent_p.R592R|APLP1_uc002ocf.2_Silent_p.R632R|APLP1_uc002ocg.2_Silent_p.R535R|APLP1_uc010xta.1_Silent_p.R625R	NM_005166	NP_005157	P51693	APLP1_HUMAN	amyloid precursor-like protein 1 isoform 2	631	Cytoplasmic (Potential).				apoptosis|cell adhesion|cellular response to norepinephrine stimulus|endocytosis|negative regulation of cAMP biosynthetic process|nervous system development|organ morphogenesis	basement membrane|integral to membrane|perinuclear region of cytoplasm|plasma membrane	alpha-2A adrenergic receptor binding|alpha-2B adrenergic receptor binding|alpha-2C adrenergic receptor binding|heparin binding|identical protein binding|metal ion binding			ovary(2)	2	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCAGCTCCGCGAACTGCAGC	0.672													17	55					0	0	0.008871	0	0
RASGRP4	115727	broad.mit.edu	37	19	38910816	38910816	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:38910816C>T	uc002oir.2	-	5	678	c.464G>A	c.(463-465)CGG>CAG	p.R155Q	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.R155Q|RASGRP4_uc010xub.1_Missense_Mutation_p.R155Q|RASGRP4_uc010xuc.1_Missense_Mutation_p.R155Q|RASGRP4_uc010xud.1_Missense_Mutation_p.R155Q|RASGRP4_uc010xue.1_Missense_Mutation_p.R155Q|RASGRP4_uc010egb.2_Missense_Mutation_p.R155Q	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	155	N-terminal Ras-GEF.				activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			GTTGCCCTCCCGGGCCACGGT	0.597													5	15					0	0	0.001168	0	0
FCGBP	8857	broad.mit.edu	37	19	40396021	40396021	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:40396021G>A	uc002omp.3	-	15	7384	c.7376C>T	c.(7375-7377)CCC>CTC	p.P2459L		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	2459	VWFD 6.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGTGTAGTGGGGATCTCCCGA	0.677													5	43					0	0	0.001168	0	0
NUMBL	9253	broad.mit.edu	37	19	41174022	41174022	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:41174022G>A	uc002oon.2	-	10	1349	c.1181C>T	c.(1180-1182)CCC>CTC	p.P394L	NUMBL_uc010xvq.1_Missense_Mutation_p.P353L|NUMBL_uc002ooo.2_Missense_Mutation_p.P393L|NUMBL_uc010xvr.1_Missense_Mutation_p.P353L	NM_004756	NP_004747	Q9Y6R0	NUMBL_HUMAN	numb homolog (Drosophila)-like	394					cytokine-mediated signaling pathway|lateral ventricle development|neuroblast division in subventricular zone|protein metabolic process	cytoplasm	protein binding			lung(3)|ovary(1)|breast(1)	5			Lung(22;0.000393)|LUSC - Lung squamous cell carcinoma(20;0.00105)			GGGCACGGAGGGCTCACCCCA	0.617													4	13					0	0	0.000248	0	0
PSG9	5678	broad.mit.edu	37	19	43766253	43766253	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:43766253T>G	uc002owd.3	-	3	567	c.468A>C	c.(466-468)TTA>TTC	p.L156F	PSG9_uc002owe.3_Missense_Mutation_p.L156F|PSG9_uc010xwm.1_Intron|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Missense_Mutation_p.L156F|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	156	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				CCCTGGGGTTTAAGTTGCTGC	0.522													42	108					0	0	0.002522	0	0
FOSB	2354	broad.mit.edu	37	19	45976038	45976038	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:45976038C>T	uc002pbx.3	+	4	1377	c.785C>T	c.(784-786)CCG>CTG	p.P262L	ERCC1_uc002pbu.1_Intron|FOSB_uc010eke.2_Missense_Mutation_p.P187L|FOSB_uc002pby.3_Missense_Mutation_p.P226L|FOSB_uc010eka.1_Intron|FOSB_uc010ekb.1_Intron|FOSB_uc010ekc.1_Intron|FOSB_uc010ekf.2_Missense_Mutation_p.P223L|FOSB_uc010ekd.1_Intron|FOSB_uc010ekg.2_Missense_Mutation_p.P119L|FOSB_uc002pca.3_Missense_Mutation_p.P213L	NM_006732	NP_006723	P53539	FOSB_HUMAN	FBJ murine osteosarcoma viral oncogene homolog B	262					behavior|multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|lung(1)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00814)|Epithelial(262;0.18)|GBM - Glioblastoma multiforme(486;0.242)		CCGCCACCACCGCCCCTGCCC	0.672													5	14					0	0	0.000602	0	0
CPT1C	126129	broad.mit.edu	37	19	50214011	50214011	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:50214011C>T	uc002ppj.2	+	15	1968	c.1763C>T	c.(1762-1764)TCG>TTG	p.S588L	CPT1C_uc002ppl.3_3'UTR|CPT1C_uc002ppi.2_Missense_Mutation_p.S505L|CPT1C_uc002ppk.2_Missense_Mutation_p.S577L|CPT1C_uc010eng.2_Missense_Mutation_p.S588L|CPT1C_uc010enh.2_Missense_Mutation_p.S588L|CPT1C_uc010ybc.1_3'UTR|CPT1C_uc010eni.1_Missense_Mutation_p.S245L	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	588	Cytoplasmic (Potential).	Carnitine (By similarity).			fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		ACTTATGAGTCGGCCATGACT	0.567													5	23					0	0	0.000602	0	0
KLK13	26085	broad.mit.edu	37	19	51559877	51559877	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:51559877G>A	uc002pvn.2	-	5	844	c.801C>T	c.(799-801)ACC>ACT	p.T267T	KLK13_uc002pvl.2_RNA|KLK13_uc002pvm.2_RNA|KLK13_uc002pvo.2_RNA|KLK13_uc002pvp.2_RNA|KLK13_uc010eon.2_Silent_p.T194T|KLK13_uc002pvq.2_RNA|KLK13_uc010eoo.2_Silent_p.T115T	NM_015596	NP_056411	Q9UKR3	KLK13_HUMAN	kallikrein 13 precursor	267					proteolysis		protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00432)		TTTGCTGCTGGGTTTCATATT	0.507													48	134					0	0	0.003610	0	0
HAS1	3036	broad.mit.edu	37	19	52220345	52220345	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:52220345C>T	uc002pxo.1	-	3	839	c.804G>A	c.(802-804)CGG>CGA	p.R268R	HAS1_uc010epc.1_5'UTR|HAS1_uc010epd.1_Silent_p.R233R|HAS1_uc002pxn.1_Silent_p.R275R|HAS1_uc002pxp.1_Silent_p.R267R	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	268	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		GGTTAAGGATCCGCACGTCCC	0.607													20	55					0	0	0.007413	0	0
VN1R2	317701	broad.mit.edu	37	19	53761937	53761937	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:53761937G>A	uc002qbi.2	+	1	393	c.309G>A	c.(307-309)GGG>GGA	p.G103G		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	103	Helical; Name=2; (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		GAATCCTGGGGAATTTTTCAC	0.259													7	14					0	0	0.001984	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55045075	55045075	+	RNA	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:55045075G>A	uc010yfa.1	+	3		c.301G>A			KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA	NR_026716				Homo sapiens mRNA for FLJ00060 protein, partial cds.											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		AAACAACTGGGACCCGAAGCC	0.527													3	17					0	0	0.004672	0	0
NLRP11	204801	broad.mit.edu	37	19	56312940	56312940	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:56312940C>T	uc010ygf.1	-	7	2880	c.2169G>A	c.(2167-2169)CTG>CTA	p.L723L	NLRP11_uc002qlz.2_Silent_p.L570L|NLRP11_uc002qmb.2_Silent_p.L624L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	723							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CAACTCACCTCAGATGACTTA	0.493													17	56					0	0	0.006122	0	0
NLRP4	147945	broad.mit.edu	37	19	56363683	56363684	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:56363683_56363684GG>AA	uc002qmd.3	+	2	659_660	c.237_238GG>AA	c.(235-240)ATGGAT>ATAAAT	p.79_80MD>IN		NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	79_80	DAPIN.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TTCAAAAGATGGATAGAAAGGA	0.426													9	55					0	0	0.004672	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701292	56701292	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:56701292C>T	uc010ygh.1	-	4	1392	c.1392G>A	c.(1390-1392)GAG>GAA	p.E464E		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	464					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						TGTAGGGCTTCTCTCCGGAGT	0.542													8	34					0	0	0.004482	0	0
ZIM3	114026	broad.mit.edu	37	19	57647422	57647422	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:57647422C>T	uc002qnz.1	-	5	669	c.283G>A	c.(283-285)GAT>AAT	p.D95N		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	95					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCTTTCACATCCTTTGGCTTC	0.398													28	88					0	0	0.002096	0	0
GEN1	348654	broad.mit.edu	37	2	17962782	17962782	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:17962782T>C	uc002rct.2	+	14	2376	c.2303T>C	c.(2302-2304)GTT>GCT	p.V768A	SMC6_uc010exo.2_Intron|GEN1_uc010yjs.1_Missense_Mutation_p.V768A|GEN1_uc002rcu.2_Missense_Mutation_p.V768A	NM_182625	NP_872431	Q17RS7	GEN_HUMAN	Gen homolog 1, endonuclease	768					DNA repair	nucleus	DNA binding|endonuclease activity|metal ion binding			breast(5)|kidney(1)|central_nervous_system(1)|skin(1)	8	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					ACCTGCAATGTTAGACCACCA	0.368								Homologous_recombination					10	28					0	0	0.008291	0	0
APOB	338	broad.mit.edu	37	2	21225588	21225588	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:21225588G>A	uc002red.2	-	29	12834	c.12706C>T	c.(12706-12708)CAT>TAT	p.H4236Y		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4236					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAACCATTATGGACTTTCGAA	0.408													113	295					0	0	0.003610	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27500709	27500709	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:27500709G>A	uc002rjl.1	+	4	619	c.201G>A	c.(199-201)GGG>GGA	p.G67G	SLC30A3_uc010ylh.1_5'Flank|DNAJC5G_uc010yli.1_Intron|DNAJC5G_uc002rjm.1_Silent_p.G67G	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	67	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGAATCCAGGGAATGCTCAAG	0.502													22	31					0	0	0.001523	0	0
PLB1	151056	broad.mit.edu	37	2	28772881	28772881	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:28772881G>A	uc002rmb.1	+	16	1013	c.1013G>A	c.(1012-1014)AGC>AAC	p.S338N	PLB1_uc010ezj.1_Missense_Mutation_p.S349N|PLB1_uc002rmc.2_Missense_Mutation_p.S26N	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	338	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|1.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					CTGCAGGAGAGCCCCTATCTG	0.463													6	19					0	0	0.001984	0	0
NLRC4	58484	broad.mit.edu	37	2	32476326	32476326	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:32476326G>A	uc002roi.2	-	4	853	c.607C>T	c.(607-609)CTC>TTC	p.L203F	NLRC4_uc002roj.1_Missense_Mutation_p.L203F|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	203	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					CTGAGACGGAGGAAGAAGACG	0.527													13	42					0	0	0.001368	0	0
THADA	63892	broad.mit.edu	37	2	43804250	43804250	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:43804250G>A	uc002rsw.3	-	10	1300	c.948C>T	c.(946-948)GCC>GCT	p.A316A	THADA_uc002rsx.3_Silent_p.A316A|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_5'Flank|THADA_uc002rsz.2_Silent_p.A26A|THADA_uc002rta.2_Silent_p.A26A|THADA_uc002rtb.1_Silent_p.A316A|THADA_uc002rtc.3_Silent_p.A316A|THADA_uc002rtd.2_Silent_p.A316A	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	316							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				AGTCCAACATGGCAAGTGTCC	0.532											OREG0014580	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	86	222					0	0	0.003610	0	0
LHCGR	3973	broad.mit.edu	37	2	48915099	48915099	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:48915099G>A	uc002rwu.3	-	11	1907	c.1837C>T	c.(1837-1839)CCC>TCC	p.P613S	GTF2A1L_uc002rwt.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	613	Helical; Name=7; (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	GAATTGATGGGATAAAAAAGA	0.383									Familial_Male-Limited_Precocious_Puberty				17	34					0	0	0.006122	0	0
LHCGR	3973	broad.mit.edu	37	2	48956350	48956350	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:48956350C>T	uc002rwu.3	-	3	320	c.250G>A	c.(250-252)GAT>AAT	p.D84N	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_Intron	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	84	Extracellular (Potential).				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TCCAGGGAATCAATCTGAGAG	0.408									Familial_Male-Limited_Precocious_Puberty				20	45					0	0	0.008871	0	0
B3GNT2	10678	broad.mit.edu	37	2	62449892	62449892	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:62449892C>T	uc002sbs.2	+	2	775	c.537C>T	c.(535-537)GTC>GTT	p.V179V		NM_006577	NP_006568	Q9NY97	B3GN2_HUMAN	UDP-GlcNAc:betaGal	179	Lumenal (Potential).					Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1	Lung NSC(7;0.031)|all_lung(7;0.0634)		LUSC - Lung squamous cell carcinoma(7;3.55e-06)|Epithelial(17;0.0963)			TGGTGCGAGTCTTCCTGCTGG	0.527													21	25					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	2	90249254	90249254	+	RNA	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:90249254C>T	uc010fhm.2	+	28		c.3797C>T								Parts of antibodies, mostly variable regions.																		AGCTCTTCATCTATTATGCAT	0.507													35	123					0	0	0.005524	0	0
TMEM131	23505	broad.mit.edu	37	2	98427651	98427651	+	Silent	SNP	A	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:98427651A>G	uc002syh.3	-	18	2137	c.1908T>C	c.(1906-1908)CTT>CTC	p.L636L		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	636						integral to membrane				ovary(4)|central_nervous_system(2)	6						TTTTTGCAGTAAGTTTGACTC	0.388													58	138					0	0	0.003610	0	0
INPP4A	3631	broad.mit.edu	37	2	99149941	99149941	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:99149941C>G	uc002syy.2	+	5	646	c.253C>G	c.(253-255)CAG>GAG	p.Q85E	INPP4A_uc010yvj.1_Missense_Mutation_p.Q85E|INPP4A_uc010yvk.1_Missense_Mutation_p.Q85E|INPP4A_uc002syx.2_Missense_Mutation_p.Q85E|INPP4A_uc010fik.2_Intron	NM_001134224	NP_001127696	Q96PE3	INP4A_HUMAN	inositol polyphosphate-4-phosphatase, type 1	85	C2.				signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			kidney(1)	1						GAAGCATGCACAGACGGAGAT	0.522													8	41					0	0	0.008291	0	0
SLC9A4	389015	broad.mit.edu	37	2	103142776	103142776	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:103142776G>A	uc002tbz.3	+	11	2466	c.2009G>A	c.(2008-2010)GGA>GAA	p.G670E		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	670	Cytoplasmic (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						CAGTCTGCAGGAAGAGACACA	0.428													20	31					0	0	0.001882	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105883953	105883953	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:105883953G>A	uc002tcq.2	-	12	2554	c.2470C>T	c.(2470-2472)CCC>TCC	p.P824S	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.P593S|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.P824S|uc002tcp.2_5'Flank	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	824					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						TCACAAAAGGGATTTTGGCAT	0.468													19	40					0	0	0.007413	0	0
GPR39	2863	broad.mit.edu	37	2	133402767	133402767	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:133402767C>T	uc002ttl.2	+	2	1419	c.950C>T	c.(949-951)TCC>TTC	p.S317F	LYPD1_uc002ttm.3_3'UTR|LYPD1_uc002ttn.2_3'UTR|LYPD1_uc002tto.2_3'UTR	NM_001508	NP_001499	O43194	GPR39_HUMAN	G protein-coupled receptor 39	317	Extracellular (Potential).					integral to plasma membrane	G-protein coupled receptor activity|metal ion binding				0						TGGACGAGGTCCTACTTCCGG	0.582													13	27					0	0	0.001855	0	0
LRP1B	53353	broad.mit.edu	37	2	141267510	141267510	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:141267510G>A	uc002tvj.1	-	52	9357	c.8385C>T	c.(8383-8385)TCC>TCT	p.S2795S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2795	Extracellular (Potential).|LDL-receptor class A 17.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGCCTGCTGTGGAAAGCTCAT	0.512										TSP Lung(27;0.18)			26	57					0	0	0.006320	0	0
NEB	4703	broad.mit.edu	37	2	152534666	152534666	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:152534666C>T	uc010fnx.2	-	33	3482	c.3291G>A	c.(3289-3291)GGG>GGA	p.G1097G		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	1097					muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CAACCATTTTCCCTTTAGCCT	0.363													6	19					0	0	0.003080	0	0
GALNT5	11227	broad.mit.edu	37	2	158115899	158115899	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:158115899C>T	uc002tzg.2	+	1	1560	c.1305C>T	c.(1303-1305)CCC>CCT	p.P435P	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	435	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						CAAGGGACCCCAAAGCTCCAG	0.463													12	26					0	0	0.002450	0	0
SCN2A	6326	broad.mit.edu	37	2	166223779	166223779	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:166223779G>A	uc002udc.2	+	19	3863	c.3573G>A	c.(3571-3573)GGG>GGA	p.G1191G	SCN2A_uc002udd.2_Silent_p.G1191G|SCN2A_uc002ude.2_Silent_p.G1191G	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1191	III.				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	AAGGCAAAGGGAAACTCTGGT	0.383													13	28					0	0	0.003163	0	0
XIRP2	129446	broad.mit.edu	37	2	168101234	168101234	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:168101234C>T	uc002udx.2	+	8	3350	c.3332C>T	c.(3331-3333)TCG>TTG	p.S1111L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.S936L|XIRP2_uc010fpq.2_Missense_Mutation_p.S889L|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	936					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GAAAAAGTTTCGTTAATGACC	0.368													13	17					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179594515	179594515	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:179594515G>A	uc010zfg.1	-	60	14957	c.14733C>T	c.(14731-14733)TCC>TCT	p.S4911S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S1572S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5838							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCAATGAAGGAAATGCCAT	0.443													18	55					0	0	0.004990	0	0
CERKL	375298	broad.mit.edu	37	2	182412551	182412551	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:182412551G>A	uc002unx.2	-	10	1336	c.1235C>T	c.(1234-1236)TCT>TTT	p.S412F	CERKL_uc002uny.2_Missense_Mutation_p.S386F|CERKL_uc010zfm.1_Missense_Mutation_p.S368F|CERKL_uc002unz.2_Missense_Mutation_p.S134F|CERKL_uc002uoa.2_Missense_Mutation_p.S317F|CERKL_uc002uob.2_Missense_Mutation_p.S134F|CERKL_uc002uoc.2_Missense_Mutation_p.S273F|CERKL_uc010frk.2_Intron|CERKL_uc002uod.1_Missense_Mutation_p.S181F|CERKL_uc002unw.2_5'UTR	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	412					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			CGACTCACCAGATTTGGGAGA	0.403													40	87					0	0	0.007835	0	0
SDPR	8436	broad.mit.edu	37	2	192700700	192700700	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:192700700G>A	uc002utb.2	-	2	1557	c.1227C>T	c.(1225-1227)TCC>TCT	p.S409S		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	409						caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	GGTCCCCATCGGAGCGCTCCG	0.632													16	27					0	0	0.004990	0	0
DNAH7	56171	broad.mit.edu	37	2	196651860	196651860	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:196651860G>A	uc002utj.3	-	58	10853	c.10752C>T	c.(10750-10752)TTC>TTT	p.F3584F	DNAH7_uc002uti.3_Silent_p.F67F	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3584	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AAGCATGAAAGAAACACAGGC	0.378													9	29					0	0	0.008291	0	0
ERBB4	2066	broad.mit.edu	37	2	212295760	212295760	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:212295760C>T	uc002veg.1	-	21	2651	c.2553G>A	c.(2551-2553)GTG>GTA	p.V851V	ERBB4_uc002veh.1_Silent_p.V851V|ERBB4_uc010zji.1_Silent_p.V841V|ERBB4_uc010zjj.1_Silent_p.V841V	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	851	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TTGGAGATTTCACTAAGACAT	0.413										TSP Lung(8;0.080)			19	40					0	0	0.001882	0	0
IHH	3549	broad.mit.edu	37	2	219920030	219920030	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:219920030C>T	uc002vjo.1	-	3	1135	c.1135G>A	c.(1135-1137)GAG>AAG	p.E379K		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	379					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGCACACCCTCCCCCGGAGTC	0.657													6	10					0	0	0.001168	0	0
EPHA4	2043	broad.mit.edu	37	2	222307622	222307622	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:222307622G>A	uc002vmq.2	-	11	2043	c.2001C>T	c.(1999-2001)TTC>TTT	p.F667F	EPHA4_uc002vmr.2_Silent_p.F667F|EPHA4_uc010zlm.1_Silent_p.F608F|EPHA4_uc010zln.1_Silent_p.F667F	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	667	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCTCACTCAGGAAGTCTCTCC	0.498													24	54					0	0	0.004656	0	0
EPHA4	2043	broad.mit.edu	37	2	222429093	222429093	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:222429093C>T	uc002vmq.2	-	3	223	c.181G>A	c.(181-183)GAT>AAT	p.D61N	EPHA4_uc002vmr.2_Missense_Mutation_p.D61N|EPHA4_uc010zlm.1_Missense_Mutation_p.D2N|EPHA4_uc010zln.1_Missense_Mutation_p.D61N	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	61	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TTTTTTTCATCCATGATACTC	0.428													29	56					0	0	0.002445	0	0
DNER	92737	broad.mit.edu	37	2	230450683	230450683	+	Silent	SNP	T	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:230450683T>A	uc002vpv.2	-	4	885	c.738A>T	c.(736-738)GGA>GGT	p.G246G	DNER_uc010zly.1_5'UTR	NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	246	Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		ACTGTTGGAATCCTGTGGCCG	0.522													8	32					0	0	0.004482	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581310	234581310	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:234581310C>T	uc002vus.2	+	1	767	c.730C>T	c.(730-732)CTC>TTC	p.L244F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.L244F	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	244					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	GGAGTATGATCTCTACAGCCA	0.423													45	144					0	0	0.003610	0	0
COL6A3	1293	broad.mit.edu	37	2	238283377	238283377	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:238283377G>A	uc002vwl.2	-	8	3642	c.3357C>T	c.(3355-3357)ATC>ATT	p.I1119I	COL6A3_uc002vwo.2_Silent_p.I913I|COL6A3_uc010znj.1_Silent_p.I512I|COL6A3_uc002vwq.2_Silent_p.I913I|COL6A3_uc002vwr.2_Silent_p.I712I	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1119	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AGCTGACCAGGATGTTCCTCA	0.642													28	38					0	0	0.007291	0	0
CAPN10	11132	broad.mit.edu	37	2	241530424	241530424	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr2:241530424G>A	uc002vzk.1	+	3	650	c.466G>A	c.(466-468)GCC>ACC	p.A156T	CAPN10_uc010zoh.1_Missense_Mutation_p.A156T|CAPN10_uc002vzl.1_Missense_Mutation_p.A156T|CAPN10_uc002vzm.1_Intron|CAPN10_uc002vzn.1_Intron|CAPN10_uc002vzo.1_RNA|CAPN10_uc010fzg.1_RNA|CAPN10_uc002vzp.1_RNA|CAPN10_uc002vzq.1_Intron	NM_023083	NP_075571	Q9HC96	CAN10_HUMAN	calpain 10 isoform a	156	Calpain catalytic.				actin cytoskeleton reorganization|cellular response to insulin stimulus|positive regulation of apoptosis|positive regulation of glucose import|positive regulation of insulin secretion|positive regulation of intracellular transport|proteolysis	cytosol|plasma membrane	calcium-dependent cysteine-type endopeptidase activity|cytoskeletal protein binding|SNARE binding			ovary(3)|large_intestine(2)|lung(1)	6		all_epithelial(40;1.72e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.13e-31)|all cancers(36;3.24e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.82e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.1e-06)|Lung(119;0.00168)|Colorectal(34;0.00495)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.032)		AAAGGTCTACGCCAAGTGCGT	0.637													7	21					0	0	0.001984	0	0
ATRN	8455	broad.mit.edu	37	20	3556597	3556597	+	Splice_Site	SNP	T	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr20:3556597T>G	uc002wim.2	+	13	2304	c.2214_splice	c.e13+2	p.Q738_splice	ATRN_uc002wil.2_Splice_Site_p.Q738_splice	NM_139321	NP_647537	O75882	ATRN_HUMAN	attractin isoform 1						inflammatory response	extracellular space|integral to plasma membrane	receptor activity|sugar binding			ovary(1)|breast(1)	2						GAAGGCCAGGTCAGAGGCTGT	0.433													7	5					0	0	0.001984	0	0
DEFB118	117285	broad.mit.edu	37	20	29960770	29960770	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr20:29960770C>T	uc002wvr.2	+	2	195	c.169C>T	c.(169-171)CCA>TCA	p.P57S		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	57					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TTGCTGCATTCCATCCAATGA	0.433													13	38					0	0	0.001855	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47630184	47630184	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr20:47630184C>T	uc002xtx.3	+	29	4154	c.4002C>T	c.(4000-4002)TTC>TTT	p.F1334F	ARFGEF2_uc010zyf.1_Silent_p.F627F	NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	1334					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			CCATCTTATTCGAACTCTCCT	0.463													5	44					0	0	0.000602	0	0
ZNF831	128611	broad.mit.edu	37	20	57766229	57766229	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr20:57766229C>T	uc002yan.2	+	1	155	c.155C>T	c.(154-156)ACT>ATT	p.T52I		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	52	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCCCCCCCCACTGTGTTCCTG	0.731													4	13					0	0	0.000248	0	0
ZNF831	128611	broad.mit.edu	37	20	57769735	57769735	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr20:57769735C>T	uc002yan.2	+	1	3661	c.3661C>T	c.(3661-3663)CCC>TCC	p.P1221S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1221						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGATGAGGGTCCCAATGGCCC	0.632													5	14					0	0	0.004482	0	0
NPBWR2	2832	broad.mit.edu	37	20	62738147	62738147	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr20:62738147C>T	uc011abt.1	-	1	38	c.38G>A	c.(37-39)AGG>AAG	p.R13K		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	13	Extracellular (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					GAAGGAGCCCCTGCTGTCAAG	0.622													23	63					0	0	0.002299	0	0
SAMSN1	64092	broad.mit.edu	37	21	15882734	15882734	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr21:15882734C>T	uc002yju.1	-	5	540	c.458G>A	c.(457-459)CGA>CAA	p.R153Q	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Missense_Mutation_p.R221Q	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	153					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		GTCATCCAGTCGAAAGCTGTC	0.478													17	32					0	0	0.004990	0	0
SFRS15	57466	broad.mit.edu	37	21	33076218	33076218	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr21:33076218G>A	uc002ypd.2	-	4	607	c.181C>T	c.(181-183)CCG>TCG	p.P61S	SFRS15_uc002ype.2_Missense_Mutation_p.P61S|SFRS15_uc010glu.2_Missense_Mutation_p.P46S|SFRS15_uc002ypf.1_5'Flank|SFRS15_uc002ypg.2_Missense_Mutation_p.P61S	NM_020706	NP_065757	O95104	SFR15_HUMAN	splicing factor, arginine/serine-rich 15 isoform	61	CID.					nucleus	nucleotide binding|RNA binding				0						TATAATCCCGGAACCTTGTAT	0.358													8	30					0	0	0.006214	0	0
DSCAM	1826	broad.mit.edu	37	21	41550888	41550888	+	Silent	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr21:41550888G>T	uc002yyq.1	-	15	3365	c.2913C>A	c.(2911-2913)CCC>CCA	p.P971P	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	971	Extracellular (Potential).|Fibronectin type-III 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GCTCGTTGCTGGGCTCGCTCT	0.602													15	30					2.32078e-09	4.45701e-09	0.003163	1	0
LOC96610	96610	broad.mit.edu	37	22	23247219	23247219	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:23247219C>T	uc011aim.1	+	373		c.16020_splice	c.e373+2		uc002zws.2_Intron					Parts of antibodies, mostly variable regions.												0						AGTCTCTTCTCCCCTCTCCTT	0.542													13	30					0	0	0.002450	0	0
EWSR1	2130	broad.mit.edu	37	22	29684658	29684658	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:29684658C>T	uc003aet.2	+	8	1185	c.857C>T	c.(856-858)TCC>TTC	p.S286F	EWSR1_uc003aes.3_Missense_Mutation_p.S286F|EWSR1_uc003aev.2_Missense_Mutation_p.S292F|EWSR1_uc003aew.2_Missense_Mutation_p.S230F|EWSR1_uc003aex.2_Missense_Mutation_p.S286F|EWSR1_uc003aey.2_Missense_Mutation_p.S81F|EWSR1_uc003aez.2_5'Flank	NM_005243	NP_005234	Q01844	EWS_HUMAN	Ewing sarcoma breakpoint region 1 isoform 2	286					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	calmodulin binding|nucleotide binding|RNA binding|zinc ion binding		EWSR1/FLI1(2266)|EWSR1/ATF1(323)|EWSR1/WT1(231)|EWSR1/ERG(162)|EWSR1/NR4A3(140)|EWSR1/DDIT3(43)|EWSR1/CREB1(42)|EWSR1/FEV(10)|EWSR1/POU5F1(10)|EWSR1/ETV1(7)|EWSR1/ETV4(6)|EWSR1/ZNF384(4)|EWSR1/PBX1(3)|EWSR1/SP3(3)|EWSR1/PATZ1(2)	bone(2526)|soft_tissue(702)|skin(8)|autonomic_ganglia(4)|haematopoietic_and_lymphoid_tissue(4)|salivary_gland(2)|central_nervous_system(2)|NS(2)|pancreas(2)|lung(1)|ovary(1)	3254						GGAGGATTTTCCGGACCAGGA	0.582			T	FLI1|ERG|ZNF278|NR4A3|FEV|ATF1|ETV1|ETV4|WT1|ZNF384|CREB1|POU5F1| PBX1	Ewing sarcoma| desmoplastic small round cell tumor |ALL|clear cell sarcoma|sarcoma|myoepithelioma								10	23					0	0	0.008291	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951469	30951470	+	Nonsense_Mutation	DNP	AG	TA	TA			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:30951469_30951470AG>TA	uc003aig.1	-	4	882_883	c.742_743CT>TA	c.(742-744)CTG>TAG	p.L248*	GAL3ST1_uc003aih.1_Nonsense_Mutation_p.L248*|GAL3ST1_uc003aii.1_Nonsense_Mutation_p.L248*|GAL3ST1_uc010gvz.1_Nonsense_Mutation_p.L248*	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	248	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						AAGGAGCACCAGGTGGAAGCGA	0.614													18	28					0	0	0.004672	0	0
SMTN	6525	broad.mit.edu	37	22	31492806	31492806	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:31492806C>T	uc003ajl.1	+	14	2167	c.1949C>T	c.(1948-1950)ACC>ATC	p.T650I	SMTN_uc003ajk.1_Missense_Mutation_p.T650I|SMTN_uc003ajm.1_Missense_Mutation_p.T650I|SMTN_uc011ale.1_Missense_Mutation_p.T735I|SMTN_uc011alf.1_Missense_Mutation_p.T706I|SMTN_uc003ajn.1_Missense_Mutation_p.T673I|SMTN_uc011alg.1_Missense_Mutation_p.T106I|SMTN_uc003ajo.1_Intron|SMTN_uc011alh.1_RNA|SMTN_uc010gwe.1_Intron	NM_006932	NP_008863	P53814	SMTN_HUMAN	smoothelin isoform c	650					muscle organ development|smooth muscle contraction	actin cytoskeleton|cytoplasm	actin binding|structural constituent of muscle			large_intestine(2)|pancreas(1)	3						ACTGAGACCACCACGAGGCAC	0.687													16	22					0	0	0.003163	0	0
PLA2G3	50487	broad.mit.edu	37	22	31535929	31535929	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:31535929C>T	uc003aka.2	-	1	541	c.412G>A	c.(412-414)GGA>AGA	p.G138R		NM_015715	NP_056530	Q9NZ20	PA2G3_HUMAN	phospholipase A2, group III precursor	138					cilium morphogenesis|lipid catabolic process|phospholipid metabolic process	centriole|extracellular space|plasma membrane	calcium ion binding|calcium-dependent phospholipase A2 activity				0						CCAGGGACTCCACTCTGCCCT	0.592													9	21					0	0	0.006214	0	0
SYNGR1	9145	broad.mit.edu	37	22	39772070	39772070	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:39772070C>T	uc003axq.3	+	3	413	c.351C>T	c.(349-351)TTC>TTT	p.F117F	SYNGR1_uc003axo.3_Silent_p.F117F|SYNGR1_uc003axp.3_Missense_Mutation_p.P84S|TAB1_uc003axr.2_Silent_p.F43F|SYNGR1_uc003axs.3_Silent_p.F118F	NM_004711	NP_004702	O43759	SNG1_HUMAN	synaptogyrin 1 isoform 1a	117	Helical; (Potential).|MARVEL.				regulation of long-term neuronal synaptic plasticity|regulation of short-term neuronal synaptic plasticity	cell junction|integral to plasma membrane|melanosome					0	Melanoma(58;0.04)					TCTGGGCTTTCCTCTGGTTCG	0.632													35	80					0	0	0.007835	0	0
CACNA1I	8911	broad.mit.edu	37	22	40068251	40068251	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:40068251C>T	uc003ayc.2	+	27	4587	c.4587C>T	c.(4585-4587)GTC>GTT	p.V1529V	CACNA1I_uc003ayd.2_Silent_p.V1494V|CACNA1I_uc003aye.2_Silent_p.V1444V|CACNA1I_uc003ayf.2_Silent_p.V1409V	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	1529	Helical; Name=S2 of repeat IV; (Potential).|IV.				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	TCACCACTGTCTTTGTGCTGG	0.532													37	136					0	0	0.006230	0	0
SREBF2	6721	broad.mit.edu	37	22	42293159	42293159	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:42293159G>T	uc003bbi.2	+	14	2768	c.2599G>T	c.(2599-2601)GCC>TCC	p.A867S	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	867	Cytoplasmic (Potential).				cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						GCTCAAGTCCGCCCTGGGTAA	0.562													7	12					5.4927e-09	1.05277e-08	0.004482	1	0
WBP2NL	164684	broad.mit.edu	37	22	42423026	42423026	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr22:42423026C>T	uc011ape.1	+	7	787	c.771C>T	c.(769-771)CTC>CTT	p.L257L	WBP2NL_uc003bbt.2_Silent_p.L257L|WBP2NL_uc011apk.1_Silent_p.L129L|WBP2NL_uc003bbu.2_RNA|WBP2NL_uc003bbv.1_RNA	NM_152613	NP_689826	Q6ICG8	WBP2L_HUMAN	WBP2 N-terminal like	257	10 X 7 AA tandem repeat of Y-G-X-P-P-X-G.|9.|Gly-rich.				egg activation|male pronucleus assembly|meiosis	perinuclear theca	WW domain binding			ovary(2)	2						CCCCACCTCTCGGATATGGAG	0.612													45	114					0	0	0.003610	0	0
CNTN4	152330	broad.mit.edu	37	3	2967331	2967331	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:2967331C>T	uc003bpc.2	+	12	1447	c.1226C>T	c.(1225-1227)TCA>TTA	p.S409L	CNTN4_uc003bpb.1_Missense_Mutation_p.S81L|CNTN4_uc003bpd.1_Missense_Mutation_p.S409L|CNTN4_uc003bpe.2_Missense_Mutation_p.S81L|CNTN4_uc003bpf.2_Missense_Mutation_p.S81L	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	409	Ig-like C2-type 5.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		CCAGATTTTTCAAGAACACTC	0.353													24	52					0	0	0.002780	0	0
ITPR1	3708	broad.mit.edu	37	3	4856869	4856869	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:4856869G>A	uc003bqa.2	+	56	8038	c.7690G>A	c.(7690-7692)GAA>AAA	p.E2564K	ITPR1_uc010hca.1_Missense_Mutation_p.E2549K|ITPR1_uc011asu.1_Missense_Mutation_p.E575K|ITPR1_uc003bqc.2_Missense_Mutation_p.E1534K|ITPR1_uc010hcc.1_Missense_Mutation_p.E332K|ITPR1_uc011asv.1_Missense_Mutation_p.E288K	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2612	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GCAGAAGAAGGAAGAGATCTT	0.493													10	25					0	0	0.006214	0	0
SCN10A	6336	broad.mit.edu	37	3	38798212	38798212	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:38798212C>T	uc003ciq.2	-	9	1243	c.1243G>A	c.(1243-1245)GAG>AAG	p.E415K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	415					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AACTTCTTCTCCTTTGCTTCA	0.507													26	68					0	0	0.004656	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307923	39307923	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:39307923G>A	uc003cjl.2	-	2	170	c.78C>T	c.(76-78)ATC>ATT	p.I26I		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	26	Extracellular (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		CAAAGACCACGATGTCCCCAA	0.473													10	22					0	0	0.006214	0	0
BSN	8927	broad.mit.edu	37	3	49689186	49689186	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:49689186C>T	uc003cxe.3	+	5	2311	c.2197C>T	c.(2197-2199)CCT>TCT	p.P733S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	733					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CAGCATGCGGCCTTTGCTGCA	0.657													11	25					0	0	0.008291	0	0
WDR82	80335	broad.mit.edu	37	3	52301026	52301026	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:52301026G>A	uc003ddl.2	-	3	550	c.268C>T	c.(268-270)CGT>TGT	p.R90C	WDR82_uc003ddk.2_Missense_Mutation_p.R15C	NM_025222	NP_079498	Q6UXN9	WDR82_HUMAN	WD repeat domain 82	90					histone H3-K4 methylation	chromatin|PTW/PP1 phosphatase complex|Set1C/COMPASS complex	protein binding				0				BRCA - Breast invasive adenocarcinoma(193;2.67e-05)|Kidney(197;0.00198)|KIRC - Kidney renal clear cell carcinoma(197;0.00223)|OV - Ovarian serous cystadenocarcinoma(275;0.246)		GACAAGTAACGAATAGTATCT	0.308													44	104					0	0	0.003610	0	0
LRTM1	57408	broad.mit.edu	37	3	54958664	54958664	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:54958664C>T	uc003dhl.2	-	2	720	c.586G>A	c.(586-588)GAG>AAG	p.E196K	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	196	Extracellular (Potential).|LRRCT.					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		ACAAATTTCTCCAGCCAGAGT	0.458													19	41					0	0	0.008871	0	0
GBE1	2632	broad.mit.edu	37	3	81699036	81699036	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:81699036G>A	uc003dqg.2	-	5	749	c.466C>T	c.(466-468)CGT>TGT	p.R156C	GBE1_uc011bgm.1_Missense_Mutation_p.R115C	NM_000158	NP_000149	Q04446	GLGB_HUMAN	glucan (1,4-alpha-), branching enzyme 1	156					glucose metabolic process|glycogen biosynthetic process	cytosol	1,4-alpha-glucan branching enzyme activity|cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(3)	3		Lung NSC(201;0.0117)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0654)|Epithelial(33;0.00305)|LUSC - Lung squamous cell carcinoma(29;0.00646)|BRCA - Breast invasive adenocarcinoma(55;0.00813)|Lung(72;0.0129)|KIRC - Kidney renal clear cell carcinoma(39;0.212)|Kidney(39;0.247)		GGTGAAATACGATACAAGATC	0.363									Glycogen_Storage_Disease_type_IV				12	23					0	0	0.001368	0	0
ILDR1	286676	broad.mit.edu	37	3	121724178	121724178	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:121724178C>T	uc003ees.2	-	3	398	c.292G>A	c.(292-294)GAA>AAA	p.E98K	ILDR1_uc003eeq.2_Missense_Mutation_p.E110K|ILDR1_uc003eer.2_Missense_Mutation_p.E98K|ILDR1_uc010hrg.2_Missense_Mutation_p.E98K	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor	98	Extracellular (Potential).|Ig-like V-type.					cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		ATGCGAACTTCCCGCTGGTTG	0.602													13	12					0	0	0.002450	0	0
IFT122	55764	broad.mit.edu	37	3	129218838	129218838	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:129218838G>A	uc003emm.2	+	19	2508	c.2302G>A	c.(2302-2304)GTG>ATG	p.V768M	IFT122_uc003eml.2_Missense_Mutation_p.V819M|IFT122_uc003emn.2_Missense_Mutation_p.V709M|IFT122_uc003emo.2_Missense_Mutation_p.V657M|IFT122_uc003emp.2_Missense_Mutation_p.V618M|IFT122_uc010htc.2_Missense_Mutation_p.V760M|IFT122_uc011bky.1_Missense_Mutation_p.V559M|IFT122_uc003emq.2_Missense_Mutation_p.V608M|IFT122_uc003emr.2_Missense_Mutation_p.V520M|IFT122_uc011bla.1_Missense_Mutation_p.V541M|IFT122_uc010hte.2_Missense_Mutation_p.V94M|IFT122_uc003ems.2_Missense_Mutation_p.V149M|IFT122_uc011bkx.1_Missense_Mutation_p.V608M|IFT122_uc010htd.1_Missense_Mutation_p.V247M	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	768					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium		p.V819L(1)		ovary(1)|skin(1)	2						CAAAGCCGCCGTGGAGATGTA	0.527													16	20					0	0	0.003163	0	0
PIK3CB	5291	broad.mit.edu	37	3	138413734	138413734	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:138413734G>A	uc011bmq.1	-	12	1786	c.1786C>T	c.(1786-1788)CAG>TAG	p.Q596*	PIK3CB_uc011bmn.1_Nonsense_Mutation_p.Q108*|PIK3CB_uc011bmo.1_Nonsense_Mutation_p.Q42*|PIK3CB_uc011bmp.1_Nonsense_Mutation_p.Q183*	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	596	PI3K helical.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						GGCCAAATCTGAAGCAGCGCC	0.473													47	209					0	0	0.003610	0	0
RASA2	5922	broad.mit.edu	37	3	141274726	141274726	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:141274726C>T	uc003etz.1	+	7	656	c.656C>T	c.(655-657)CCG>CTG	p.P219L	RASA2_uc010huq.1_Missense_Mutation_p.P219L|RASA2_uc003eua.1_Missense_Mutation_p.P219L|RASA2_uc011bnc.1_5'UTR	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	219	C2 2.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						ACAAGCAATCCGCAGTTTAAT	0.264													7	22					0	0	0.008291	0	0
GPR87	53836	broad.mit.edu	37	3	151012384	151012384	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:151012384G>A	uc003eyt.2	-	3	1011	c.650C>T	c.(649-651)GCC>GTC	p.A217V	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_023915	NP_076404	Q9BY21	GPR87_HUMAN	G protein-coupled receptor 87	217	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CACCAGCACGGCCACAAACAA	0.458													18	43					0	0	0.004990	0	0
MECOM	2122	broad.mit.edu	37	3	168845645	168845645	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:168845645G>A	uc003ffi.3	-	4	522	c.253C>T	c.(253-255)CCT>TCT	p.P85S	MECOM_uc010hwk.1_Missense_Mutation_p.P108S|MECOM_uc003ffj.3_Missense_Mutation_p.P149S|MECOM_uc011bpi.1_Missense_Mutation_p.P85S|MECOM_uc003ffn.3_Missense_Mutation_p.P85S|MECOM_uc003ffk.2_Missense_Mutation_p.P85S|MECOM_uc003ffl.2_Missense_Mutation_p.P245S|MECOM_uc011bpj.1_Missense_Mutation_p.P273S|MECOM_uc011bpk.1_Missense_Mutation_p.P75S|MECOM_uc010hwn.2_Missense_Mutation_p.P273S|MECOM_uc003ffm.1_Missense_Mutation_p.P149S	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	85	Interaction with MAPK9, SMAD3 and probably SUV39H1.|C2H2-type 2.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TGCAAATCAGGAAAAACTTGG	0.383													16	48					0	0	0.004007	0	0
FNDC3B	64778	broad.mit.edu	37	3	172025210	172025210	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:172025210C>T	uc003fhy.2	+	10	1291	c.1119C>T	c.(1117-1119)ACC>ACT	p.T373T	FNDC3B_uc003fhz.3_Silent_p.T373T|FNDC3B_uc003fia.2_Silent_p.T304T	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	373	Fibronectin type-III 1.					endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		TTAGCTTCACCACCCACAGCT	0.512													24	37					0	0	0.002780	0	0
USP13	8975	broad.mit.edu	37	3	179470094	179470094	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:179470094C>T	uc003fkh.2	+	14	1812	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F	USP13_uc003fkf.2_Intron	NM_003940	NP_003931	Q92995	UBP13_HUMAN	ubiquitin thiolesterase 13	577					ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(1)	1	all_cancers(143;7.79e-15)|Ovarian(172;0.0338)|Breast(254;0.148)		OV - Ovarian serous cystadenocarcinoma(80;1e-25)|GBM - Glioblastoma multiforme(14;0.0169)			TTGCTTCATTCCCTGAATACT	0.368													9	61					0	0	0.006214	0	0
ECE2	9718	broad.mit.edu	37	3	184008402	184008402	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:184008402C>T	uc003fni.3	+	15	2105	c.2067C>T	c.(2065-2067)ATC>ATT	p.I689I	ECE2_uc011brh.1_Silent_p.I542I|ECE2_uc003fnl.3_Silent_p.I617I|ECE2_uc003fnm.3_Silent_p.I571I|ECE2_uc003fnk.3_Silent_p.I542I|ECE2_uc011bri.1_Silent_p.I604I|ECE2_uc010hxv.2_Silent_p.I333I	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	689	Lumenal (Potential).|Endothelin-converting enzyme 2 region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			AGAATGAGATCGTCTTCCCCG	0.507													21	58					0	0	0.002780	0	0
KNG1	3827	broad.mit.edu	37	3	186459360	186459360	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:186459360G>A	uc011bsa.1	+	10	1387	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	KNG1_uc003fqr.2_Missense_Mutation_p.R392Q	NM_001102416	NP_001095886	P01042	KNG1_HUMAN	kininogen 1 isoform 1	392					blood coagulation, intrinsic pathway|elevation of cytosolic calcium ion concentration|inflammatory response|negative regulation of blood coagulation|negative regulation of cell adhesion|platelet activation|platelet degranulation|positive regulation of apoptosis|positive regulation of renal sodium excretion|positive regulation of urine volume|smooth muscle contraction|vasodilation	extracellular space|plasma membrane|platelet alpha granule lumen	cysteine-type endopeptidase inhibitor activity|heparin binding|receptor binding|zinc ion binding			skin(1)	1	all_cancers(143;8.96e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;4.12e-20)	GBM - Glioblastoma multiforme(93;0.0798)	Ouabain(DB01092)	CGATCATCACGAATAGGGGAA	0.403													8	22					0	0	0.003080	0	0
ATP13A4	84239	broad.mit.edu	37	3	193174907	193174907	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:193174907G>A	uc003ftd.2	-	16	1905	c.1797C>T	c.(1795-1797)TTC>TTT	p.F599F	ATP13A4_uc003fte.1_Silent_p.F599F|ATP13A4_uc011bsr.1_Silent_p.F70F|ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	599	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ATGAGAATGGGAACTGATGCA	0.512													13	55					0	0	0.002450	0	0
ACAP2	23527	broad.mit.edu	37	3	195022715	195022715	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:195022715G>A	uc003fun.3	-	14	1546	c.1305C>T	c.(1303-1305)ATC>ATT	p.I435I		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	435	Arf-GAP.|C4-type.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						CGGAGCACTCGATACACAAGG	0.522													25	69					0	0	0.003954	0	0
PCYT1A	5130	broad.mit.edu	37	3	195968927	195968927	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr3:195968927G>A	uc003fwg.2	-	8	773	c.600C>T	c.(598-600)ATC>ATT	p.I200I	PCYT1A_uc003fwh.2_Silent_p.I200I	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	200	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	CTGATGTGGAGATACCTTCTG	0.468													9	33					0	0	0.006214	0	0
TMEM175	84286	broad.mit.edu	37	4	945483	945483	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:945483C>T	uc003gbq.2	+	6	454	c.356C>T	c.(355-357)ACC>ATC	p.T119I	TMEM175_uc010ibl.1_Missense_Mutation_p.T119I|TMEM175_uc003gbp.1_Missense_Mutation_p.T37I|TMEM175_uc003gbr.2_Missense_Mutation_p.T37I|TMEM175_uc003gbu.2_Missense_Mutation_p.T37I|TMEM175_uc003gbs.2_Missense_Mutation_p.T2I|TMEM175_uc003gbt.2_Missense_Mutation_p.T2I|TMEM175_uc003gbv.2_Missense_Mutation_p.T2I|TMEM175_uc010ibm.2_Intron	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	119	Helical; (Potential).					integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			TGCATGATGACCATCACCTTC	0.612													21	63					0	0	0.003330	0	0
LDB2	9079	broad.mit.edu	37	4	16510269	16510269	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:16510269C>T	uc003goz.2	-	7	1096	c.780G>A	c.(778-780)AGG>AGA	p.R260R	LDB2_uc003gpa.2_Silent_p.R260R|LDB2_uc003gpb.2_Silent_p.R260R|LDB2_uc011bxh.1_Silent_p.R232R|LDB2_uc010iee.2_Silent_p.R260R|LDB2_uc003goy.2_Silent_p.R135R|LDB2_uc011bxi.1_Silent_p.R136R	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	260							LIM domain binding|transcription cofactor activity				0						TGGAATTTTTCCTTTTTCTCC	0.488													9	30					0	0	0.004482	0	0
KLB	152831	broad.mit.edu	37	4	39409207	39409207	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:39409207C>T	uc003gua.2	+	1	735	c.638C>T	c.(637-639)ACC>ATC	p.T213I	KLB_uc011byj.1_Missense_Mutation_p.T213I	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	213	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						AAAAATGATACCATAATAGAT	0.388													13	47					0	0	0.001855	0	0
LIMCH1	22998	broad.mit.edu	37	4	41621226	41621226	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:41621226C>T	uc003gvu.3	+	8	758	c.704C>T	c.(703-705)TCC>TTC	p.S235F	LIMCH1_uc003gvt.1_Missense_Mutation_p.S76F|LIMCH1_uc003gvv.3_Missense_Mutation_p.S235F|LIMCH1_uc003gvw.3_Missense_Mutation_p.S235F|LIMCH1_uc003gvx.3_Missense_Mutation_p.S235F|LIMCH1_uc003gwe.3_Missense_Mutation_p.S235F|LIMCH1_uc003gvy.3_Missense_Mutation_p.S76F|LIMCH1_uc003gwa.3_Missense_Mutation_p.S76F|LIMCH1_uc003gvz.3_Missense_Mutation_p.S76F|LIMCH1_uc011byu.1_Missense_Mutation_p.S81F|LIMCH1_uc003gwc.3_Missense_Mutation_p.S81F|LIMCH1_uc003gwd.3_Missense_Mutation_p.S81F|LIMCH1_uc011byv.1_5'UTR|LIMCH1_uc003gwb.1_Missense_Mutation_p.S83F	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	235					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						GACTCTGAATCCGACTTGCCT	0.507													52	170					0	0	0.003610	0	0
BEND4	389206	broad.mit.edu	37	4	42145820	42145820	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:42145820C>T	uc003gwn.2	-	3	1259	c.679G>A	c.(679-681)GAC>AAC	p.D227N	BEND4_uc003gwm.2_Missense_Mutation_p.D227N|BEND4_uc011byy.1_Missense_Mutation_p.D227N	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	227											0						TCTACATTGTCTGAGGTCTGA	0.443													8	19					0	0	0.006214	0	0
LRRC66	339977	broad.mit.edu	37	4	52861452	52861452	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:52861452G>A	uc003gzi.2	-	4	1749	c.1736C>T	c.(1735-1737)TCC>TTC	p.S579F		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	579						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TCCGGAGAGGGAAGGGTCTAA	0.502													25	81					0	0	0.006320	0	0
PDGFRA	5156	broad.mit.edu	37	4	55129930	55129930	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:55129930C>T	uc003han.3	+	4	795	c.464C>T	c.(463-465)CCC>CTC	p.P155L	PDGFRA_uc003haa.2_Intron|PDGFRA_uc003hal.2_Missense_Mutation_p.P155L|PDGFRA_uc010igq.1_Missense_Mutation_p.P49L|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	155	Extracellular (Potential).|Ig-like C2-type 2.				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	ACAACTGATCCCGAGACTCCT	0.493			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			20	42					0	0	0.008871	0	0
UBA6	55236	broad.mit.edu	37	4	68500030	68500030	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:68500030G>A	uc003hdg.3	-	22	1995	c.1943C>T	c.(1942-1944)TCC>TTC	p.S648F		NM_018227	NP_060697	A0AVT1	UBA6_HUMAN	ubiquitin-activating enzyme E1-like 2	648					protein ubiquitination|ubiquitin-dependent protein catabolic process	cytoplasm	ATP binding|FAT10 activating enzyme activity|ligase activity|protein binding				0						GTGGGAAAAGGAACTTTCAAA	0.269													12	26					0	0	0.001368	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68938200	68938200	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:68938200C>T	uc003hdt.1	-	5	404	c.355G>A	c.(355-357)GAT>AAT	p.D119N	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	119	SEA.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CCTTGTTCATCTGGACTGAAG	0.294													4	15					0	0	0.000602	0	0
RASSF6	166824	broad.mit.edu	37	4	74450947	74450947	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:74450947C>T	uc003hhd.1	-	6	736	c.613G>A	c.(613-615)GAA>AAA	p.E205K	RASSF6_uc003hhc.1_Missense_Mutation_p.E173K|RASSF6_uc010iik.1_Missense_Mutation_p.E173K|RASSF6_uc010iil.1_Missense_Mutation_p.E161K	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	205					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			TTCTGTCTTTCTTTTCTGTCC	0.383													24	48					0	0	0.002780	0	0
FRAS1	80144	broad.mit.edu	37	4	79417986	79417986	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:79417986G>A	uc003hlb.2	+	60	9426	c.8986G>A	c.(8986-8988)GAT>AAT	p.D2996N	FRAS1_uc003hlc.1_5'UTR	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2991	Calx-beta 4.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CTATATCCACGATGACTCCAT	0.438													36	91					0	0	0.002222	0	0
MMRN1	22915	broad.mit.edu	37	4	90816646	90816646	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:90816646G>A	uc003hst.2	+	1	595	c.524G>A	c.(523-525)GGA>GAA	p.G175E	MMRN1_uc010iku.2_Missense_Mutation_p.G141E	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	175					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		ggaggcGTGGGAAATCGAGCC	0.358													6	25					0	0	0.001984	0	0
TACR3	6870	broad.mit.edu	37	4	104577417	104577417	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:104577417G>A	uc003hxe.1	-	3	965	c.822C>T	c.(820-822)CTC>CTT	p.L274L		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	274	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		CTCCTCCCCAGAGAGTAATTC	0.388													24	55					0	0	0.003330	0	0
TACR3	6870	broad.mit.edu	37	4	104640803	104640803	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:104640803C>T	uc003hxe.1	-	1	173	c.30G>A	c.(28-30)TGG>TGA	p.W10*		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	10	Extracellular (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		CCCCGTCTATCCAGGTTTCTG	0.672													7	30					0	0	0.004482	0	0
ALPK1	80216	broad.mit.edu	37	4	113353293	113353293	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:113353293C>T	uc003iap.3	+	11	2869	c.2590C>T	c.(2590-2592)CCC>TCC	p.P864S	ALPK1_uc003ian.3_Missense_Mutation_p.P864S|ALPK1_uc011cfx.1_Missense_Mutation_p.P786S|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.P692S	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	864							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		CATGGATGTTCCCTGCACAAA	0.577													5	27					0	0	0.000602	0	0
USP53	54532	broad.mit.edu	37	4	120192980	120192980	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:120192980C>T	uc003ics.3	+	15	3031	c.1965C>T	c.(1963-1965)TCC>TCT	p.S655S	USP53_uc003icr.3_Silent_p.S655S|USP53_uc003icu.3_Silent_p.S278S|USP53_uc003ict.2_Silent_p.S278S	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	655					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						GCAGAAGTTCCCTTGAATCTA	0.383													9	29					0	0	0.004482	0	0
BBS12	166379	broad.mit.edu	37	4	123665154	123665154	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:123665154G>A	uc003ieu.2	+	2	2300	c.2107G>A	c.(2107-2109)GAA>AAA	p.E703K		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	703					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						AAATTCACAGGAATTAACGGG	0.348									Bardet-Biedl_syndrome				18	47					0	0	0.008871	0	0
FAT4	79633	broad.mit.edu	37	4	126242082	126242082	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:126242082G>A	uc003ifj.3	+	1	4516	c.4516G>A	c.(4516-4518)GAA>AAA	p.E1506K		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1506	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGTGCCAATAGAAACTAGACG	0.398													23	39					0	0	0.001882	0	0
C4orf51	646603	broad.mit.edu	37	4	146617735	146617735	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:146617735C>T	uc003ikk.2	+	2	258	c.258C>T	c.(256-258)GCC>GCT	p.A86A		NM_001080531	NP_001074000	C9J302	CD051_HUMAN	chromosome 4 open reading frame 51	86											0						ACAGTTCTGCCTGTCATCTTC	0.433													13	29					0	0	0.002450	0	0
EDNRA	1909	broad.mit.edu	37	4	148441023	148441023	+	Silent	SNP	T	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:148441023T>G	uc003iky.2	+	3	1133	c.441T>G	c.(439-441)CCT>CCG	p.P147P	EDNRA_uc011cid.1_5'UTR|EDNRA_uc010ipe.1_Intron|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Intron	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	147	Extracellular (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	GGCGCTGGCCTTTTGATCACA	0.512													37	91					0	0	0.006999	0	0
FGA	2243	broad.mit.edu	37	4	155505343	155505343	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:155505343G>A	uc003iod.1	-	6	2592	c.2534C>T	c.(2533-2535)TCC>TTC	p.S845F		NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	845	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCCTCTAAAGGAAACCCAGAC	0.493													34	82					0	0	0.006230	0	0
TKTL2	84076	broad.mit.edu	37	4	164394100	164394100	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:164394100C>T	uc003iqp.3	-	1	948	c.787G>A	c.(787-789)GGA>AGA	p.G263R		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	263						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ACTGGCTTTCCATGCCAATTT	0.418													32	75					0	0	0.003271	0	0
TLL1	7092	broad.mit.edu	37	4	166924563	166924563	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:166924563G>A	uc003irh.1	+	6	1300	c.653G>A	c.(652-654)CGG>CAG	p.R218Q	TLL1_uc011cjn.1_Missense_Mutation_p.R218Q|TLL1_uc011cjo.1_Missense_Mutation_p.R42Q	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	218	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		TATGTAGGTCGGCGAGGAAAT	0.428													18	43					0	0	0.008871	0	0
ADAM29	11086	broad.mit.edu	37	4	175896782	175896782	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:175896782C>T	uc003iuc.2	+	5	776	c.106C>T	c.(106-108)CCT>TCT	p.P36S	ADAM29_uc003iud.2_Missense_Mutation_p.P36S|ADAM29_uc010irr.2_Missense_Mutation_p.P36S|ADAM29_uc011cki.1_Missense_Mutation_p.P36S	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	36					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TGTGGTGATTCCTGTGAGGAT	0.527													15	21					0	0	0.003163	0	0
ODZ3	55714	broad.mit.edu	37	4	183664516	183664516	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:183664516C>T	uc003ivd.1	+	18	3610	c.3573C>T	c.(3571-3573)TTC>TTT	p.F1191F	ODZ3_uc003ive.1_Silent_p.F597F	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1191	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TAGGCGATTTCAACTATGTGC	0.468													10	35					0	0	0.001855	0	0
ENPP6	133121	broad.mit.edu	37	4	185074732	185074732	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:185074732C>T	uc003iwc.2	-	2	538	c.396G>A	c.(394-396)AGG>AGA	p.R132R		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	132	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TGTAGACCTTCCTTTTGGCCT	0.473													6	25					0	0	0.003080	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455191	187455191	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr4:187455191C>T	uc003izd.1	-	2	723	c.705G>A	c.(703-705)AGG>AGA	p.R235R		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	235	Cytoplasmic (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	TGACAAAATTCCTGAAGTCCT	0.502													31	73					0	0	0.002836	0	0
SLC6A19	340024	broad.mit.edu	37	5	1221985	1221985	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:1221985C>T	uc003jbw.3	+	12	1927	c.1871C>T	c.(1870-1872)TCC>TTC	p.S624F		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	624	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AGCACACTGTCCACAGCCTCC	0.602													9	35					0	0	0.006214	0	0
TERT	7015	broad.mit.edu	37	5	1266600	1266600	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:1266600G>A	uc003jcb.1	-	10	2691	c.2633C>T	c.(2632-2634)ACC>ATC	p.T878I	TERT_uc003jbz.1_Missense_Mutation_p.T74I|TERT_uc003jca.1_Missense_Mutation_p.T866I|TERT_uc003jcc.1_Missense_Mutation_p.T878I|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	878	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TTTCGCGTGGGTGAGGTGAGG	0.537									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				3	12					0	0	0.000248	0	0
TERT	7015	broad.mit.edu	37	5	1278770	1278770	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:1278770C>T	uc003jcb.1	-	6	2330	c.2272G>A	c.(2272-2274)GCC>ACC	p.A758T	TERT_uc003jbz.1_Silent_p.R14R|TERT_uc003jca.1_Missense_Mutation_p.A746T|TERT_uc003jcc.1_Missense_Mutation_p.A758T|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	758	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CTCTTGAAGGCCTTGCGGACG	0.562									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				136	149					0	0	0.003610	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5239386	5239386	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:5239386C>T	uc003jdl.2	+	15	2415	c.2277C>T	c.(2275-2277)AAC>AAT	p.N759N	ADAMTS16_uc003jdk.1_Silent_p.N759N|ADAMTS16_uc010itk.1_RNA	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	759	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						ACCACACCAACCGTGAGTACT	0.512													29	54					0	0	0.001786	0	0
DNAH5	1767	broad.mit.edu	37	5	13766162	13766162	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:13766162C>T	uc003jfd.2	-	59	10066	c.10024G>A	c.(10024-10026)GAA>AAA	p.E3342K	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3342	Stalk (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGCTTTTTTCCAGGTCAATT	0.488									Kartagener_syndrome				22	101					0	0	0.001882	0	0
SPEF2	79925	broad.mit.edu	37	5	35628589	35628589	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:35628589C>T	uc003jjo.2	+	2	197	c.86C>T	c.(85-87)TCC>TTC	p.S29F	SPEF2_uc003jjn.1_Missense_Mutation_p.S29F|SPEF2_uc003jjq.3_Missense_Mutation_p.S29F	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	29	CH.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAGGCATTTTCCAGTGGCTAT	0.343													16	46					0	0	0.004990	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41005013	41005013	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:41005013C>T	uc003jmj.3	-	36	4364	c.3874G>A	c.(3874-3876)GAA>AAA	p.E1292K	HEATR7B2_uc003jmi.3_Missense_Mutation_p.E847K	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1292	HEAT 14.						binding			ovary(6)|central_nervous_system(2)	8						AGGATTGGTTCCTTCATGAGC	0.493													3	17					0	0	0.000248	0	0
C6	729	broad.mit.edu	37	5	41143030	41143030	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:41143030C>T	uc003jmk.2	-	18	2912	c.2702G>A	c.(2701-2703)GGA>GAA	p.G901E	C6_uc003jml.1_Missense_Mutation_p.G901E	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	901	Complement control factor I module 2.|C5b-binding domain.|Kazal-like 2.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TGTTGATGATCCCATTTTGAC	0.448													8	61					0	0	0.003080	0	0
CD180	4064	broad.mit.edu	37	5	66480183	66480183	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:66480183G>A	uc003juy.2	-	3	636	c.488C>T	c.(487-489)TCC>TTC	p.S163F		NM_005582	NP_005573	Q99467	CD180_HUMAN	CD180 molecule precursor	163	Extracellular (Potential).|LRR 5.				inflammatory response|innate immune response	integral to membrane|plasma membrane	receptor activity			ovary(1)	1		Lung NSC(167;4.94e-05)|Prostate(74;0.00601)|Ovarian(174;0.0654)|Breast(144;0.198)|Colorectal(97;0.234)		Lung(70;0.0046)		GAACTTAATGGAGGAAATATG	0.398													15	64					0	0	0.002450	0	0
BDP1	55814	broad.mit.edu	37	5	70806635	70806635	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:70806635A>G	uc003kbp.1	+	17	3979	c.3716A>G	c.(3715-3717)AAG>AGG	p.K1239R	BDP1_uc003kbn.1_Missense_Mutation_p.K1239R|BDP1_uc003kbo.2_Missense_Mutation_p.K1239R	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1239	Potential.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.|8; approximate.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		CAAAGGGAAAAGGTGCTAGCA	0.403													3	92					0	0	0.004672	0	0
FSTL4	23105	broad.mit.edu	37	5	132537632	132537632	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:132537632G>A	uc003kyn.1	-	15	2037	c.1819C>T	c.(1819-1821)CAC>TAC	p.H607Y	FSTL4_uc003kym.1_Missense_Mutation_p.H256Y	NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	607						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CACCTGATGTGGTTGATGATG	0.572													20	61					0	0	0.001882	0	0
TXNDC15	79770	broad.mit.edu	37	5	134223703	134223703	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:134223703C>T	uc003lac.1	+	2	1080	c.422C>T	c.(421-423)CCT>CTT	p.P141L	TXNDC15_uc010jdy.1_Intron|TXNDC15_uc011cxv.1_RNA	NM_024715	NP_078991	Q96J42	TXD15_HUMAN	disulfide isomerase precursor	141	Extracellular (Potential).				cell redox homeostasis	integral to membrane				ovary(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCACACTTCCCTGACAGAGAA	0.562													7	34					0	0	0.003080	0	0
CATSPER3	347732	broad.mit.edu	37	5	134332199	134332199	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:134332199C>T	uc003lag.2	+	3	557	c.489C>T	c.(487-489)ATC>ATT	p.I163I		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	163	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCCAGGGCATCCGGGTGAGTG	0.547													15	35					0	0	0.006122	0	0
PKD2L2	27039	broad.mit.edu	37	5	137235267	137235267	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:137235267G>A	uc003lby.2	+	5	643	c.587G>A	c.(586-588)CGA>CAA	p.R196Q	PKD2L2_uc010jep.1_Missense_Mutation_p.R136Q|PKD2L2_uc003lbw.1_Missense_Mutation_p.R196Q|PKD2L2_uc003lbx.2_Missense_Mutation_p.R196Q|PKD2L2_uc011cyi.1_5'UTR	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	196	Extracellular (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			GGTGTTTACCGAAATGGGGGA	0.383													11	32					0	0	0.001855	0	0
PCDHA1	56147	broad.mit.edu	37	5	140167316	140167316	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:140167316G>A	uc003lhb.2	+	1	1441	c.1441G>A	c.(1441-1443)GAC>AAC	p.D481N	PCDHA1_uc003lha.2_Missense_Mutation_p.D481N|PCDHA1_uc003lgz.2_Missense_Mutation_p.D481N	NM_018900	NP_061723	Q9Y5I3	PCDA1_HUMAN	protocadherin alpha 1 isoform 1 precursor	481	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCTGCGCGGGACGCGGACGC	0.652													21	44					0	0	0.003330	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140789491	140789491	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:140789491C>T	uc003lkj.1	+	1	1722	c.1722C>T	c.(1720-1722)TTC>TTT	p.F574F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Silent_p.F574F	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	574	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCCGCGTTCTTCGATATGG	0.642													5	8					0	0	0.001168	0	0
GPRIN1	114787	broad.mit.edu	37	5	176026397	176026397	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:176026397G>A	uc003meo.1	-	2	614	c.439C>T	c.(439-441)CCC>TCC	p.P147S		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	147						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGAACATGGGATTTCTGTCA	0.527													23	70					0	0	0.002299	0	0
ZNF354C	30832	broad.mit.edu	37	5	178504160	178504160	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr5:178504160C>T	uc003mju.2	+	4	358	c.243C>T	c.(241-243)ACC>ACT	p.T81T		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	81	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		CTTCAGATACCCGTCTAGGTA	0.463													8	25					0	0	0.004482	0	0
HIST1H2BK	85236	broad.mit.edu	37	6	27114398	27114398	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:27114398C>T	uc003nix.1	-	1	222	c.180G>A	c.(178-180)ATG>ATA	p.M60I	HIST1H2AH_uc003niz.2_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080593	NP_542160	O60814	H2B1K_HUMAN	histone cluster 1, H2bk	60					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCATGATTCCCATGGCCTTAG	0.587													7	165					0	0	0.006214	0	0
OR2W1	26692	broad.mit.edu	37	6	29012292	29012292	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:29012292T>G	uc003nlw.2	-	1	661	c.661A>C	c.(661-663)ATT>CTT	p.I221L		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						GCTTTGGCAATGTAGCCATAG	0.408													17	50					0	0	0.004990	0	0
OR2J3	442186	broad.mit.edu	37	6	29080287	29080287	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:29080287C>T	uc011dll.1	+	1	620	c.620C>T	c.(619-621)TCC>TTC	p.S207F		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATCACAAGCTCCATATTTGTT	0.463													10	53					0	0	0.008291	0	0
HLA-G	3135	broad.mit.edu	37	6	29797602	29797602	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:29797602C>T	uc003nnw.2	+	6	1083	c.905C>T	c.(904-906)TCC>TTC	p.S302F	HLA-G_uc011dmb.1_Missense_Mutation_p.S274F|HLA-G_uc003raj.3_Missense_Mutation_p.S307F|HLA-G_uc003nnz.3_Missense_Mutation_p.S210F|HLA-G_uc010jrn.2_Missense_Mutation_p.S118F|HLA-G_uc003nny.3_RNA|HLA-G_uc003ran.1_RNA	NM_002127	NP_002118	P17693	HLAG_HUMAN	major histocompatibility complex, class I, G	302	Extracellular (Potential).|Connecting peptide.				antigen processing and presentation of peptide antigen via MHC class I|cellular defense response|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity			ovary(3)|central_nervous_system(1)	4						GAGCAGTCTTCCCTGCCCACC	0.582													13	44					0	0	0.004007	0	0
COL11A2	1302	broad.mit.edu	37	6	33136349	33136349	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:33136349C>T	uc003ocx.1	-	54	4135	c.3907G>A	c.(3907-3909)GGA>AGA	p.G1303R	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Missense_Mutation_p.G1217R|COL11A2_uc003ocz.1_Missense_Mutation_p.G1196R	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	1303	Triple-helical region.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCAGGGGATCCCTAGGGAGAG	0.617													14	11					0	0	0.003163	0	0
CUTA	51596	broad.mit.edu	37	6	33384428	33384428	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:33384428C>T	uc003oej.1	-	6	827	c.539G>A	c.(538-540)TGA>TAA	p.*180*	CUTA_uc003oek.1_Silent_p.*157*|CUTA_uc003oel.1_Silent_p.*157*|CUTA_uc003oem.1_Silent_p.*157*|CUTA_uc003oen.1_Silent_p.*199*	NM_001014840	NP_001014840	O60888	CUTA_HUMAN	cutA divalent cation tolerance homolog isoform	180					protein localization|response to metal ion	membrane	enzyme binding				0						CAGGGCTCATCATGGCAGGAC	0.532													32	49					0	0	0.006230	0	0
DNAH8	1769	broad.mit.edu	37	6	38883070	38883070	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:38883070G>A	uc003ooe.1	+	66	10006	c.9406G>A	c.(9406-9408)GAA>AAA	p.E3136K	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AATTGTGGATGAAATTGATAG	0.418													9	23					0	0	0.004482	0	0
FOXP4	116113	broad.mit.edu	37	6	41557871	41557871	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:41557871G>A	uc003oql.2	+	11	1778	c.1320G>A	c.(1318-1320)CGG>CGA	p.R440R	FOXP4_uc003oqm.2_Silent_p.R438R|FOXP4_uc003oqn.2_Silent_p.R427R	NM_001012426	NP_001012426	Q8IVH2	FOXP4_HUMAN	forkhead box P4 isoform 1	440					embryonic foregut morphogenesis|heart development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CAGCCCGTCGGAGAAGCAGTG	0.692													13	36					0	0	0.007413	0	0
ENPP5	59084	broad.mit.edu	37	6	46135775	46135775	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:46135775G>A	uc003oxz.1	-	2	433	c.225C>T	c.(223-225)AAC>AAT	p.N75N	ENPP5_uc003oya.1_Silent_p.N75N|ENPP5_uc011dvz.1_Intron|ENPP5_uc010jzc.1_Silent_p.N75N	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	75						extracellular region|integral to membrane	hydrolase activity				0						AAGTATAATGGTTAGGGTAGG	0.343													17	20					0	0	0.004007	0	0
BAI3	577	broad.mit.edu	37	6	70040418	70040418	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:70040418G>A	uc003pev.3	+	23	3504	c.3056G>A	c.(3055-3057)GGA>GAA	p.G1019E	BAI3_uc010kak.2_Missense_Mutation_p.G1019E|BAI3_uc011dxx.1_Missense_Mutation_p.G225E|BAI3_uc003pex.1_Missense_Mutation_p.G149E	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1019	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				TCTCTTGAAGGAGGACTACTC	0.368													9	20					0	0	0.008291	0	0
DDX43	55510	broad.mit.edu	37	6	74110081	74110081	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:74110081G>A	uc003pgw.2	+	3	775	c.431G>A	c.(430-432)GGA>GAA	p.G144E	DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	144						intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						TCAGAATGCGGAATTGGTAAG	0.323													12	41					0	0	0.002450	0	0
ME1	4199	broad.mit.edu	37	6	84025057	84025057	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:84025057C>T	uc003pjy.2	-	6	782	c.676G>A	c.(676-678)GAC>AAC	p.D226N	ME1_uc011dzb.1_Missense_Mutation_p.D151N|ME1_uc011dzc.1_Missense_Mutation_p.D60N	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	226					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	ATGAATTCGTCCAAAAAATCA	0.303													19	50					0	0	0.002299	0	0
RNGTT	8732	broad.mit.edu	37	6	89600286	89600286	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:89600286G>A	uc003pmr.2	-	8	1044	c.824C>T	c.(823-825)TCC>TTC	p.S275F	RNGTT_uc003pms.2_Missense_Mutation_p.S275F|RNGTT_uc011dzu.1_Missense_Mutation_p.S215F|RNGTT_uc003pmt.2_Missense_Mutation_p.S275F	NM_003800	NP_003791	O60942	MCE1_HUMAN	RNA guanylyltransferase and 5'-phosphatase	275	GTase.				interspecies interaction between organisms|mRNA capping|transcription from RNA polymerase II promoter|viral reproduction	nucleoplasm	GTP binding|mRNA guanylyltransferase activity|polynucleotide 5'-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			upper_aerodigestive_tract(1)	1		all_cancers(76;4.07e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;6.86e-05)		BRCA - Breast invasive adenocarcinoma(108;0.151)		CTTGTCCATGGAAACAGGCTG	0.383													9	21					0	0	0.006214	0	0
FUT9	10690	broad.mit.edu	37	6	96651418	96651418	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:96651418G>A	uc003pop.3	+	3	728	c.387G>A	c.(385-387)CAG>CAA	p.Q129Q		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	129	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CACCCTTCCAGAAATGGATTT	0.463													11	22					0	0	0.000978	0	0
THEMIS	387357	broad.mit.edu	37	6	128134715	128134715	+	Silent	SNP	G	A	A	rs146173025		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:128134715G>A	uc003qbi.2	-	5	1390	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I	THEMIS_uc010kfa.2_Silent_p.I260I|THEMIS_uc011ebt.1_Silent_p.I357I|THEMIS_uc010kfb.2_Silent_p.I322I	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	357	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus		p.I357I(1)		ovary(2)|skin(2)	4						CACTCTTAGCGATCTCTAGGT	0.502													33	69					0	0	0.003755	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762578	130762578	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:130762578C>T	uc003qca.2	+	3	1882	c.1011C>T	c.(1009-1011)TCC>TCT	p.S337S	TMEM200A_uc010kfh.2_Silent_p.S337S|TMEM200A_uc010kfi.2_Silent_p.S337S|TMEM200A_uc003qcb.2_Silent_p.S337S	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	337	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		CCAGTGAATCCTTCCAGCCCG	0.483													13	21					0	0	0.003163	0	0
IL20RA	53832	broad.mit.edu	37	6	137329747	137329747	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:137329747C>T	uc003qhj.2	-	5	1146	c.713G>A	c.(712-714)AGG>AAG	p.R238K	IL20RA_uc011edl.1_Missense_Mutation_p.R189K|IL20RA_uc003qhk.2_Missense_Mutation_p.R127K|IL20RA_uc003qhi.2_5'UTR	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	238	Extracellular (Potential).					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		TTTCAAAGTCCTGGCACACTG	0.493													19	80					0	0	0.002299	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584479	138584479	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:138584479A>G	uc003qhu.2	+	12	1859	c.1859A>G	c.(1858-1860)AAG>AGG	p.K620R		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	620	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GCAGCAGAAAAGGACTCGGGC	0.517													3	162					0	0	0.000248	0	0
KIAA1244	57221	broad.mit.edu	37	6	138608024	138608024	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:138608024G>A	uc003qhu.2	+	16	2756	c.2756G>A	c.(2755-2757)CGG>CAG	p.R919Q		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	919					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		GACGGGCTGCGGAAAGCCGCA	0.627													19	33					0	0	0.006122	0	0
TAGAP	117289	broad.mit.edu	37	6	159463193	159463193	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr6:159463193C>T	uc003qrz.2	-	5	564	c.232G>A	c.(232-234)GAG>AAG	p.E78K	TAGAP_uc011eft.1_Missense_Mutation_p.E15K|TAGAP_uc003qsa.2_Intron|TAGAP_uc003qsb.2_Missense_Mutation_p.E78K|uc003qsc.2_5'Flank	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	78					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		AAGTCTGTCTCCAAAGCCCCA	0.488													33	107					0	0	0.002445	0	0
C7orf27	221927	broad.mit.edu	37	7	2578060	2578060	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:2578060G>A	uc003smi.2	-	14	2151	c.2109C>T	c.(2107-2109)TTC>TTT	p.F703F	C7orf27_uc003smh.3_Silent_p.F135F	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	703					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		CACAAAAGGCGAAGTCAAAGA	0.617													11	27					0	0	0.008291	0	0
STK31	56164	broad.mit.edu	37	7	23775395	23775395	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:23775395C>T	uc003sws.3	+	7	789	c.722C>T	c.(721-723)CCT>CTT	p.P241L	STK31_uc003swt.3_Missense_Mutation_p.P218L|STK31_uc011jze.1_Missense_Mutation_p.P241L|STK31_uc010kuq.2_Missense_Mutation_p.P218L	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	241							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AGCCCCATTCCTTTGTGGGGG	0.453													12	45					0	0	0.001368	0	0
HOXA3	3200	broad.mit.edu	37	7	27147572	27147572	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:27147572C>T	uc011jzl.1	-	3	1494	c.1294G>A	c.(1294-1296)GGA>AGA	p.G432R	HOXA3_uc011jzk.1_Missense_Mutation_p.G274R|HOXA3_uc003syk.2_Missense_Mutation_p.G432R	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	432					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						TGAATTCTTCCCTGAGAAGGA	0.637													22	52					0	0	0.001882	0	0
TXNDC3	51314	broad.mit.edu	37	7	37907456	37907456	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:37907456C>T	uc003tfn.2	+	11	1146	c.774C>T	c.(772-774)GTC>GTT	p.V258V		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	258					cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						AACCTGAGGTCGAAGCCCAGG	0.443									Kartagener_syndrome				11	9					0	0	0.008291	0	0
CAMK2B	816	broad.mit.edu	37	7	44283126	44283126	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:44283126G>A	uc003tkq.2	-	7	625	c.415C>T	c.(415-417)CCG>TCG	p.P139S	CAMK2B_uc003tkp.2_Missense_Mutation_p.P139S|CAMK2B_uc003tkx.2_Missense_Mutation_p.P139S|CAMK2B_uc010kyd.2_RNA|CAMK2B_uc003tkr.2_Missense_Mutation_p.P139S|CAMK2B_uc003tks.2_Missense_Mutation_p.P139S|CAMK2B_uc003tku.2_Missense_Mutation_p.P139S|CAMK2B_uc003tkv.2_Missense_Mutation_p.P139S|CAMK2B_uc003tkt.2_Missense_Mutation_p.P139S|CAMK2B_uc003tkw.2_Missense_Mutation_p.P139S|CAMK2B_uc010kyc.2_Missense_Mutation_p.P139S	NM_001220	NP_001211	Q13554	KCC2B_HUMAN	calcium/calmodulin-dependent protein kinase II	139	Protein kinase.				interferon-gamma-mediated signaling pathway|synaptic transmission	cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			large_intestine(1)|ovary(1)	2						AGGTTCTCCGGCTGCAGGGAG	0.567													5	21					0	0	0.000602	0	0
NPC1L1	29881	broad.mit.edu	37	7	44573095	44573095	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:44573095G>A	uc003tlb.2	-	8	2400	c.2344C>T	c.(2344-2346)CTT>TTT	p.L782F	NPC1L1_uc003tlc.2_Missense_Mutation_p.L782F|NPC1L1_uc011kbw.1_Missense_Mutation_p.L782F|NPC1L1_uc003tld.2_3'UTR	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	782	Helical; Name=7; (Potential).|SSD.				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	AGGAAGTCAAGGATCACTGCA	0.642													13	43					0	0	0.002450	0	0
PKD1L1	168507	broad.mit.edu	37	7	47876576	47876576	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:47876576G>A	uc003tny.1	-	37	5886	c.5886C>T	c.(5884-5886)TCC>TCT	p.S1962S		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1962	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CGCACAGCAGGGAGAAGGACA	0.602													5	22					0	0	0.000602	0	0
ABCB1	5243	broad.mit.edu	37	7	87179797	87179797	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:87179797C>T	uc003uiz.1	-	12	1629	c.1211G>A	c.(1210-1212)CGA>CAA	p.R404Q	ABCB1_uc011khc.1_Missense_Mutation_p.R340Q	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	404	ABC transporter 1.|Cytoplasmic (Potential).				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	AACTTCTTTTCGAGATGGGTA	0.323													9	32					0	0	0.004482	0	0
AKAP9	10142	broad.mit.edu	37	7	91726016	91726016	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:91726016C>T	uc003ulg.2	+	41	9968	c.9743C>T	c.(9742-9744)TCA>TTA	p.S3248L	AKAP9_uc003ulf.2_Missense_Mutation_p.S3240L|AKAP9_uc003uli.2_Missense_Mutation_p.S2871L|AKAP9_uc003ulj.2_Missense_Mutation_p.S1018L|AKAP9_uc003ull.2_Missense_Mutation_p.S144L	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3252	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			CTGAAGTTTTCACTTGAGAGT	0.259			T	BRAF	papillary thyroid								19	19					0	0	0.007413	0	0
CYP3A7	1551	broad.mit.edu	37	7	99315203	99315203	+	Nonsense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:99315203C>T	uc003uru.2	-	5	483	c.378G>A	c.(376-378)TGG>TGA	p.W126*	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000765	NP_000756	P24462	CP3A7_HUMAN	cytochrome P450, family 3, subfamily A,	126					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)	1	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)					GTATTCTCTTCCATTCTTCAT	0.383													11	15					0	0	0.001855	0	0
ZKSCAN1	7586	broad.mit.edu	37	7	99621198	99621198	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:99621198C>T	uc003usk.1	+	2	288	c.69C>T	c.(67-69)ATC>ATT	p.I23I	ZKSCAN1_uc003usj.2_Silent_p.I22I|ZKSCAN1_uc003usl.1_5'UTR|ZKSCAN1_uc003usm.1_Intron	NM_003439	NP_003430	P17029	ZKSC1_HUMAN	zinc finger protein 36	23					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3	Lung NSC(181;0.0211)|all_lung(186;0.0323)|Esophageal squamous(72;0.0439)		STAD - Stomach adenocarcinoma(171;0.129)			AGGATGGTATCGTAATAGTGA	0.547													17	59					0	0	0.004990	0	0
STAG3	10734	broad.mit.edu	37	7	99799858	99799858	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:99799858G>A	uc003utx.1	+	24	2613	c.2458G>A	c.(2458-2460)GAT>AAT	p.D820N	STAG3_uc011kjk.1_Missense_Mutation_p.D762N|GATS_uc003uty.3_RNA|GATS_uc003utz.3_RNA|GATS_uc003uua.3_3'UTR|GATS_uc010lgt.2_RNA|STAG3_uc003uub.1_Missense_Mutation_p.D44N	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	820					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					TGGGGGCCGTGATTTCCTTAG	0.478													69	78					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100675084	100675084	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:100675084C>T	uc003uxp.1	+	3	440	c.387C>T	c.(385-387)TTC>TTT	p.F129F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	129	Extracellular (Potential).|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCACACTTTTCCCCAGTTCTA	0.478													31	57					0	0	0.002836	0	0
MUC17	140453	broad.mit.edu	37	7	100682054	100682054	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:100682054G>A	uc003uxp.1	+	3	7410	c.7357G>A	c.(7357-7359)GAA>AAA	p.E2453K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2453	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|39.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACCTCCTAGTGAAGGAACCAC	0.537													121	210					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103141318	103141318	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:103141318G>A	uc003vca.2	-	53	8701	c.8541C>T	c.(8539-8541)ATC>ATT	p.I2847I	RELN_uc010liz.2_Silent_p.I2847I	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2847					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AGAAATTATCGATTGCCCACT	0.458													24	104					0	0	0.006320	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117397991	117397991	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:117397991G>A	uc003vjf.2	-	11	3298	c.3206C>T	c.(3205-3207)GCG>GTG	p.A1069V		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	1069										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		CGGGGACTGCGCGAAGCTCTG	0.443													9	13					0	0	0.000978	0	0
PLXNA4	91584	broad.mit.edu	37	7	131982865	131982865	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:131982865G>A	uc003vra.3	-	4	1717	c.1488C>T	c.(1486-1488)ATC>ATT	p.I496I		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	496	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCTCTGACATGATGTAGAGTT	0.572													16	91					0	0	0.006122	0	0
KIAA1549	57670	broad.mit.edu	37	7	138583700	138583700	+	Splice_Site	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:138583700C>T	uc011kql.1	-	9	3896	c.3847_splice	c.e9+1	p.P1283_splice	KIAA1549_uc011kqi.1_Intron|KIAA1549_uc003vuk.3_Splice_Site_p.P1233_splice|KIAA1549_uc011kqj.1_Splice_Site_p.P1283_splice|KIAA1549_uc011kqk.1_Intron	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1							integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						CAGGCACTTACGCTGGGCAAT	0.512			O	BRAF	pilocytic astrocytoma								14	64					0	0	0.002450	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453137	+	Missense_Mutation	DNP	AC	TT	TT	rs121913378		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:140453136_140453137AC>TT	uc003vwc.3	-	15	1859_1860	c.1798_1799GT>AA	c.(1798-1800)GTG>AAG	p.V600K		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAGA	0.366	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)|V600M(IGR1_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				36	35					0	0	0.004672	0	0
MGAM	8972	broad.mit.edu	37	7	141799434	141799434	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:141799434G>A	uc003vwy.2	+	44	5137	c.5083G>A	c.(5083-5085)GGA>AGA	p.G1695R		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1695	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TAATGCAAGAGGAGAGTGGAA	0.532													22	80					0	0	0.004656	0	0
GSTK1	373156	broad.mit.edu	37	7	142962155	142962155	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:142962155C>T	uc003wci.2	+	4	439	c.354C>T	c.(352-354)TCC>TCT	p.S118S	GSTK1_uc011ksy.1_Silent_p.S75S|GSTK1_uc003wcj.2_Silent_p.S118S|GSTK1_uc011ksz.1_Silent_p.S118S	NM_015917	NP_057001	Q9Y2Q3	GSTK1_HUMAN	glutathione S-transferase kappa 1 isoform a	118						outer membrane-bounded periplasmic space|peroxisome	glutathione transferase activity|identical protein binding|protein disulfide oxidoreductase activity				0	Melanoma(164;0.059)				Glutathione(DB00143)	AGAAAGCGTCCCGGGAGCTGT	0.602													4	41					0	0	0.000602	0	0
EPHA1	2041	broad.mit.edu	37	7	143096020	143096020	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:143096020C>T	uc003wcz.2	-	6	1097	c.1010G>A	c.(1009-1011)CGA>CAA	p.R337Q		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	337	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity	p.R337Q(1)		ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				GCTCAGGTTTCGGGGGGCCGA	0.637													6	7					0	0	0.001168	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147183107	147183107	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:147183107G>A	uc003weu.1	+	11	2267	c.1751G>A	c.(1750-1752)GGA>GAA	p.G584E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	584	EGF-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GATGAGACAGGATACAGTGGG	0.458										HNSCC(39;0.1)			13	85					0	0	0.002450	0	0
ZNF777	27153	broad.mit.edu	37	7	149129613	149129613	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:149129613G>A	uc003wfv.2	-	6	1913	c.1750C>T	c.(1750-1752)CGG>TGG	p.R584W		NM_015694	NP_056509	Q9ULD5	ZN777_HUMAN	zinc finger protein 777	584	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			TGCTTGTGCCGGAAGCTGATC	0.642													35	32					0	0	0.003271	0	0
GIMAP8	155038	broad.mit.edu	37	7	150171193	150171193	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:150171193G>A	uc003whj.2	+	4	1106	c.776G>A	c.(775-777)GGA>GAA	p.G259E		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	259						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CGCGGTGCTGGAAAAAGTGCA	0.567													41	52					0	0	0.008740	0	0
PRKAG2	51422	broad.mit.edu	37	7	151261175	151261175	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:151261175C>T	uc003wkk.2	-	14	2184	c.1573G>A	c.(1573-1575)GTA>ATA	p.V525I	PRKAG2_uc003wki.2_Missense_Mutation_p.V284I|PRKAG2_uc011kvl.1_Missense_Mutation_p.V400I|PRKAG2_uc003wkj.2_Missense_Mutation_p.V481I|PRKAG2_uc003wkl.2_Missense_Mutation_p.V73I	NM_016203	NP_057287	Q9UGJ0	AAKG2_HUMAN	AMP-activated protein kinase gamma2 subunit	525	CBS 4.				ATP biosynthetic process|carnitine shuttle|cell cycle arrest|fatty acid biosynthetic process|glycogen metabolic process|insulin receptor signaling pathway|intracellular protein kinase cascade|positive regulation of peptidyl-threonine phosphorylation|positive regulation of protein kinase activity|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation|regulation of glucose import|regulation of glycolysis|sterol biosynthetic process	AMP-activated protein kinase complex|cytosol|nucleoplasm	ADP binding|ATP binding|cAMP-dependent protein kinase inhibitor activity|cAMP-dependent protein kinase regulator activity|phosphorylase kinase regulator activity|protein kinase activator activity|protein kinase binding			breast(1)|kidney(1)	2	all_neural(206;0.187)	all_hematologic(28;0.0605)	OV - Ovarian serous cystadenocarcinoma(82;0.00252)	UCEC - Uterine corpus endometrioid carcinoma (81;0.185)		TCAGCTCTTACTATTCTGTCC	0.517													19	111					0	0	0.007413	0	0
PAXIP1	22976	broad.mit.edu	37	7	154745976	154745976	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:154745976T>G	uc003wlp.2	-	16	2853	c.2810A>C	c.(2809-2811)CAG>CCG	p.Q937P	PAXIP1_uc003wlq.1_Missense_Mutation_p.Q903P|PAXIP1_uc011kvs.1_Missense_Mutation_p.Q901P	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	PAX interacting protein 1	937	BRCT 5.|Interaction with TP53BP1.				DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		AATGAACTTCTGACACCTGAA	0.423													23	123					0	0	0.005443	0	0
PTPRN2	5799	broad.mit.edu	37	7	157985081	157985082	+	Nonsense_Mutation	DNP	GG	AA	AA	rs141519128		TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr7:157985081_157985082GG>AA	uc003wno.2	-	5	607_608	c.486_487CC>TT	c.(484-489)TCCCAG>TCTTAG	p.Q163*	PTPRN2_uc003wnp.2_Nonsense_Mutation_p.Q146*|PTPRN2_uc003wnq.2_Nonsense_Mutation_p.Q163*|PTPRN2_uc003wnr.2_Nonsense_Mutation_p.Q125*|PTPRN2_uc011kwa.1_Nonsense_Mutation_p.Q186*	NM_002847	NP_002838	Q92932	PTPR2_HUMAN	protein tyrosine phosphatase, receptor type, N	163	Extracellular (Potential).					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(4)|large_intestine(1)|pleura(1)|skin(1)	7	all_neural(206;0.181)	all_cancers(7;8.99e-13)|all_epithelial(9;2.4e-06)|all_hematologic(28;0.0155)|Breast(660;0.132)	OV - Ovarian serous cystadenocarcinoma(82;0.00463)	STAD - Stomach adenocarcinoma(7;0.0875)		GCTGGGGCCTGGGACAGGGCCT	0.693													50	38					0	0	0.004672	0	0
MYOM2	9172	broad.mit.edu	37	8	2017587	2017587	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:2017587C>T	uc003wpx.3	+	8	902	c.764C>T	c.(763-765)CCA>CTA	p.P255L	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	255					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GACGAGGAACCATTCCGTTCG	0.507													31	83					0	0	0.004289	0	0
CSMD1	64478	broad.mit.edu	37	8	2944783	2944783	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:2944783G>A	uc011kwk.1	-	49	7703	c.7313C>T	c.(7312-7314)CCC>CTC	p.P2438L	CSMD1_uc011kwj.1_Missense_Mutation_p.P1767L|CSMD1_uc010lrg.2_Missense_Mutation_p.P506L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2438	Sushi 14.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATTCTTCAGGGGGTGGGTCAA	0.493													15	47					0	0	0.002450	0	0
CSMD1	64478	broad.mit.edu	37	8	3611552	3611552	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:3611552C>T	uc011kwk.1	-	6	1221	c.831G>A	c.(829-831)ATG>ATA	p.M277I		NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	277	Extracellular (Potential).|CUB 2.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGGGAGGTTCATGCCAGTTA	0.443													7	21					0	0	0.003080	0	0
TUSC3	7991	broad.mit.edu	37	8	15508241	15508241	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:15508241C>T	uc003wwt.2	+	3	554	c.344C>T	c.(343-345)TCC>TTC	p.S115F	TUSC3_uc003wwr.2_Missense_Mutation_p.S115F|TUSC3_uc003wws.2_Missense_Mutation_p.S115F|TUSC3_uc003wwu.2_Missense_Mutation_p.S115F|TUSC3_uc003wwv.2_Missense_Mutation_p.S115F|TUSC3_uc003www.2_Missense_Mutation_p.S115F|TUSC3_uc003wwx.2_RNA|TUSC3_uc003wwy.2_Missense_Mutation_p.S115F	NM_006765	NP_006756	Q13454	TUSC3_HUMAN	tumor suppressor candidate 3 isoform a	115					cell redox homeostasis|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				ovary(2)|central_nervous_system(1)	3				Colorectal(111;0.113)		CTGGCGAACTCCTGGCGCTAT	0.393													27	77					0	0	0.008361	0	0
ADAM7	8756	broad.mit.edu	37	8	24324428	24324428	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:24324428C>T	uc003xeb.2	+	6	619	c.506C>T	c.(505-507)TCC>TTC	p.S169F	ADAM7_uc003xea.1_Missense_Mutation_p.S169F	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	169	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		GCCAATTATTCCTGTACAGAG	0.373													14	58					0	0	0.007413	0	0
ADRA1A	148	broad.mit.edu	37	8	26627970	26627970	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:26627970G>A	uc003xfh.1	-	2	1533	c.1097C>T	c.(1096-1098)GCC>GTC	p.A366V	ADRA1A_uc003xfc.1_Missense_Mutation_p.A366V|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Missense_Mutation_p.A366V|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron|ADRA1A_uc003xfg.1_Missense_Mutation_p.A366V	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	366	Cytoplasmic (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	CCCTTCCACGGCCTGGCTGGG	0.527													31	94					0	0	0.002096	0	0
LSM1	27257	broad.mit.edu	37	8	38021196	38021196	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:38021196C>G	uc003xkw.2	-	4	582	c.394G>C	c.(394-396)GAG>CAG	p.E132Q	LSM1_uc003xkx.2_RNA	NM_014462	NP_055277	O15116	LSM1_HUMAN	Lsm1 protein	132					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|mRNA processing|RNA splicing, via transesterification reactions	cytosol|nucleus|ribonucleoprotein complex	protein binding|RNA binding				0	Colorectal(12;0.000442)					GATTAGTACTCATCAAGAGTA	0.507													7	24					0	0	0.001984	0	0
ANK1	286	broad.mit.edu	37	8	41550174	41550174	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:41550174C>T	uc003xok.2	-	31	3934	c.3850G>A	c.(3850-3852)GAC>AAC	p.D1284N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Missense_Mutation_p.D600N|ANK1_uc003xoi.2_Missense_Mutation_p.D1284N|ANK1_uc003xoj.2_Missense_Mutation_p.D1284N|ANK1_uc003xol.2_Missense_Mutation_p.D1284N|ANK1_uc003xom.2_Missense_Mutation_p.D1325N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1284					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			ACCTCTATGTCCCTGCTCCGG	0.612													68	193					0	0	0.003610	0	0
MYST3	7994	broad.mit.edu	37	8	41832293	41832293	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:41832293A>G	uc010lxb.2	-	9	1955	c.1411T>C	c.(1411-1413)TTT>CTT	p.F471L	MYST3_uc010lxc.2_Missense_Mutation_p.F471L|MYST3_uc003xon.3_Missense_Mutation_p.F471L|MYST3_uc010lxd.2_Missense_Mutation_p.F471L	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	471	Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			TGGCTCCCAAAAAGTCGCTCC	0.388													12	39					0	0	0.000978	0	0
CHRNB3	1142	broad.mit.edu	37	8	42585792	42585792	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:42585792C>T	uc003xpi.1	+	4	433	c.305C>T	c.(304-306)TCC>TTC	p.S102F		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	102	Extracellular (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GGGATCCATTCCATTAAAGTT	0.358													11	31					0	0	0.001855	0	0
PXDNL	137902	broad.mit.edu	37	8	52321203	52321203	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:52321203C>T	uc003xqu.3	-	17	3082	c.2981G>A	c.(2980-2982)GGA>GAA	p.G994E	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	994					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AACCGTGTTTCCCTCCCAGTG	0.637													4	5					0	0	0.000248	0	0
TRIM55	84675	broad.mit.edu	37	8	67062463	67062463	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:67062463C>T	uc003xvv.2	+	6	1075	c.849C>T	c.(847-849)ACC>ACT	p.T283T	TRIM55_uc003xvu.2_Silent_p.T283T|TRIM55_uc003xvw.2_Silent_p.T283T|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	283	COS.					cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			ATGCCAAAACCCTGCTAAAAA	0.318													3	24					0	0	0.004672	0	0
PSKH2	85481	broad.mit.edu	37	8	87081842	87081842	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:87081842C>T	uc011lfy.1	-	1	10	c.10G>A	c.(10-12)GGC>AGC	p.G4S		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	4							ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			CTGCTGGCGCCGCACCCCATA	0.711													4	9					0	0	0.000248	0	0
RIMS2	9699	broad.mit.edu	37	8	105263284	105263285	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:105263284_105263285GG>AA	uc003yls.2	+	27	4019_4020	c.3778_3779GG>AA	c.(3778-3780)GGA>AAA	p.G1260K	RIMS2_uc003ylp.2_Missense_Mutation_p.G1242K|RIMS2_uc003ylw.2_Missense_Mutation_p.G1249K|RIMS2_uc003ylq.2_Missense_Mutation_p.G1056K|RIMS2_uc003ylr.2_Missense_Mutation_p.G1081K	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1304	C2 2.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			ATTAGATAACGGAGTCTGCATA	0.416										HNSCC(12;0.0054)			10	33					0	0	0.004672	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110455963	110455963	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:110455963C>T	uc003yne.2	+	37	4727	c.4623C>T	c.(4621-4623)CCC>CCT	p.P1541P		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1541	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAACAGAACCCCTGTGCAGCC	0.423										HNSCC(38;0.096)			4	22					0	0	0.000602	0	0
TG	7038	broad.mit.edu	37	8	133920538	133920538	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:133920538G>A	uc003ytw.2	+	18	3996	c.3955G>A	c.(3955-3957)GTT>ATT	p.V1319I	TG_uc010mdw.2_Missense_Mutation_p.V78I	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1319					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		GACTTTCCAGGTTTTCATATT	0.582													13	29					0	0	0.001368	0	0
FAM135B	51059	broad.mit.edu	37	8	139164359	139164360	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:139164359_139164360CC>GT	uc003yuy.2	-	13	2529_2530	c.2358_2359GG>AC	c.(2356-2361)GCGGAC>GCACAC	p.D787H	FAM135B_uc003yux.2_Missense_Mutation_p.D688H|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.D349H|FAM135B_uc003yvb.2_Missense_Mutation_p.D349H	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	787										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGCTTGGTGTCCGCATCTTCAG	0.52										HNSCC(54;0.14)			11	29					0	0	0.004672	0	0
COL22A1	169044	broad.mit.edu	37	8	139763734	139763734	+	Silent	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:139763734G>T	uc003yvd.2	-	22	2499	c.2052C>A	c.(2050-2052)GGC>GGA	p.G684G	COL22A1_uc011ljo.1_5'UTR	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	684	Pro-rich.|Gly-rich.|Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GTCCATCCCTGCCTTCTGGGC	0.453										HNSCC(7;0.00092)			15	45					2.48551e-13	4.78286e-13	0.004990	1	0
EIF2C2	27161	broad.mit.edu	37	8	141567195	141567195	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:141567195G>A	uc003yvn.2	-	8	1059	c.1019C>T	c.(1018-1020)CCC>CTC	p.P340L	EIF2C2_uc010men.2_Missense_Mutation_p.P263L|EIF2C2_uc010meo.2_Missense_Mutation_p.P340L	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	340	PAZ.				mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			TGCCTCCAGGGGAAGGTAGGT	0.612													19	71					0	0	0.008871	0	0
TOP1MT	116447	broad.mit.edu	37	8	144403526	144403526	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr8:144403526C>T	uc003yxz.2	-	8	1010	c.991G>A	c.(991-993)GAC>AAC	p.D331N	TOP1MT_uc011lkd.1_Missense_Mutation_p.D233N|TOP1MT_uc011lke.1_Missense_Mutation_p.D233N|TOP1MT_uc010mfb.2_Missense_Mutation_p.D233N|TOP1MT_uc011lkf.1_Missense_Mutation_p.D126N|TOP1MT_uc010mfd.1_Missense_Mutation_p.D126N	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	331					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	GCCTCACCGTCCTCCTTCTCA	0.567													15	36					0	0	0.004990	0	0
PTPRD	5789	broad.mit.edu	37	9	8470993	8470993	+	Splice_Site	SNP	A	G	G			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:8470993A>G	uc003zkk.2	-	30	4215	c.3504_splice	c.e30+1	p.E1168_splice	PTPRD_uc003zkp.2_Splice_Site_p.E757_splice|PTPRD_uc003zkq.2_Splice_Site_p.E757_splice|PTPRD_uc003zkr.2_Splice_Site_p.E752_splice|PTPRD_uc003zks.2_Splice_Site_p.E747_splice|PTPRD_uc003zkl.2_Splice_Site_p.E1159_splice|PTPRD_uc003zkm.2_Splice_Site_p.E1155_splice|PTPRD_uc003zkn.2_Splice_Site_p.E757_splice|PTPRD_uc003zko.2_Splice_Site_p.E754_splice	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D						transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TGACACAGTTACCTCATCTAA	0.438										TSP Lung(15;0.13)			13	37					0	0	0.001368	0	0
PTPRD	5789	broad.mit.edu	37	9	8499680	8499680	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:8499680G>A	uc003zkk.2	-	24	3000	c.2289C>T	c.(2287-2289)CCC>CCT	p.P763P	PTPRD_uc003zkp.2_Intron|PTPRD_uc003zkq.2_Intron|PTPRD_uc003zkr.2_Intron|PTPRD_uc003zks.2_Intron|PTPRD_uc003zkl.2_Silent_p.P763P|PTPRD_uc003zkm.2_Silent_p.P750P|PTPRD_uc003zkn.2_Intron|PTPRD_uc003zko.2_Intron	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	763	Fibronectin type-III 5.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		CTTTCAGCATGGGCTGGCCCT	0.438										TSP Lung(15;0.13)			23	68					0	0	0.004656	0	0
IFT74	80173	broad.mit.edu	37	9	27029056	27029056	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:27029056T>A	uc010mja.2	+	13	1135	c.1008T>A	c.(1006-1008)TTT>TTA	p.F336L	IFT74_uc010mjb.2_Missense_Mutation_p.F336L|IFT74_uc003zqf.3_Missense_Mutation_p.F336L|IFT74_uc003zqg.3_Missense_Mutation_p.F336L	NM_001099223	NP_001092693	Q96LB3	IFT74_HUMAN	coiled-coil domain containing 2 isoform a	336	Potential.					cytoplasmic membrane-bounded vesicle|intraflagellar transport particle B|microtubule-based flagellum		p.F336S(1)		skin(1)	1		all_neural(11;2.36e-10)		Lung(218;1.4e-05)|LUSC - Lung squamous cell carcinoma(38;0.000114)		TAAATCAGTTTATTGAAGAAA	0.269													13	18					0	0	0.004007	0	0
VPS13A	23230	broad.mit.edu	37	9	79835234	79835234	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:79835234G>T	uc004akr.2	+	12	1184	c.924G>T	c.(922-924)ATG>ATT	p.M308I	VPS13A_uc004akp.3_Missense_Mutation_p.M308I|VPS13A_uc004akq.3_Missense_Mutation_p.M308I|VPS13A_uc004aks.2_Missense_Mutation_p.M308I	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	308					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TTGATATGATGGCACAAAATC	0.313													9	20					2.17888e-05	4.12705e-05	0.006214	1	0
FLJ46321	389763	broad.mit.edu	37	9	84606203	84606203	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:84606203C>T	uc004amn.2	+	4	865	c.818C>T	c.(817-819)TCA>TTA	p.S273L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	273						integral to membrane					0						ACCATCTTTTCATTTGGCTCC	0.512													76	182					0	0	0.003610	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609396	84609396	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:84609396C>T	uc004amn.2	+	4	4058	c.4011C>T	c.(4009-4011)TCC>TCT	p.S1337S		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1337						integral to membrane					0						GCAAATCTTCCCCAACCTTGA	0.478													3	17					0	0	0.004672	0	0
C9orf79	286234	broad.mit.edu	37	9	90501461	90501461	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:90501461G>A	uc004app.3	+	4	2094	c.2059G>A	c.(2059-2061)GGC>AGC	p.G687S	C9orf79_uc004apo.1_Missense_Mutation_p.G499S	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	687						integral to membrane				ovary(3)	3						TGCAGGGAAGGGCAGGAAGGA	0.612													13	48					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	9	90745751	90745751	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:90745751G>A	uc011lti.1	-	4	2230	c.2201C>T	c.(2200-2202)TCC>TTC	p.S734F	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;																		TGCAGGTGAGGAGGCCTGAAG	0.572													15	35					0	0	0.004007	0	0
SEMA4D	10507	broad.mit.edu	37	9	91978413	91978413	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:91978413C>T	uc011ltm.1	-	20	2694	c.2122G>A	c.(2122-2124)GAG>AAG	p.E708K	SEMA4D_uc011ltn.1_RNA|SEMA4D_uc011lto.1_RNA|SEMA4D_uc004aql.2_RNA|SEMA4D_uc004aqm.2_RNA	NM_001142287	NP_001135759	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 2	Error:Variant_position_missing_in_Q92854_after_alignment					anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						GCAGAGAGCTCTCTGGTCCAC	0.617													17	27					0	0	0.004990	0	0
BAAT	570	broad.mit.edu	37	9	104125180	104125180	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:104125180G>A	uc010mtd.2	-	4	896	c.787C>T	c.(787-789)CCT>TCT	p.P263S	BAAT_uc004bbd.3_Missense_Mutation_p.P263S	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	263					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	ATGCCAAAAGGAAAGTTGGTC	0.443													23	49					0	0	0.002780	0	0
OR13C5	138799	broad.mit.edu	37	9	107361157	107361157	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:107361157C>T	uc011lvp.1	-	1	538	c.538G>A	c.(538-540)GAA>AAA	p.E180K		NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						GCTAGAATTTCACAGGTGAAA	0.423													31	69					0	0	0.008361	0	0
C9orf84	158401	broad.mit.edu	37	9	114476800	114476800	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:114476800C>T	uc004bfr.2	-	15	2283	c.2148G>A	c.(2146-2148)AAG>AAA	p.K716K	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Silent_p.K677K|C9orf84_uc010mug.2_Silent_p.K627K	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	716								p.K677N(1)		ovary(2)	2						TGGTTTCAGGCTTTTTCCCCC	0.383													9	35					0	0	0.004482	0	0
UGCG	7357	broad.mit.edu	37	9	114688773	114688773	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:114688773G>T	uc004bft.2	+	5	845	c.555G>T	c.(553-555)GAG>GAT	p.E185D		NM_003358	NP_003349	Q16739	CEGT_HUMAN	ceramide glucosyltransferase	185	Cytoplasmic (Potential).				epidermis development|glucosylceramide biosynthetic process	Golgi membrane|integral to membrane|membrane fraction	ceramide glucosyltransferase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(323;0.0433)	Miglustat(DB00419)	CCACCTTAGAGCAGGTGAGTA	0.448													10	34					7.48243e-07	1.42846e-06	0.006214	1	0
PRPF4	9128	broad.mit.edu	37	9	116045468	116045468	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:116045468G>T	uc004bgx.2	+	5	590	c.540G>T	c.(538-540)TGG>TGT	p.W180C	PRPF4_uc004bgy.2_Missense_Mutation_p.W179C	NM_004697	NP_004688	O43172	PRP4_HUMAN	PRP4 pre-mRNA processing factor 4 homolog	180						Cajal body|nuclear speck|spliceosomal complex|U4/U6 snRNP	protein binding			ovary(2)|pancreas(1)	3						CAAGACTATGGATTGCTAATT	0.408													22	62					9.62636e-23	1.8561e-22	0.002299	1	0
PAPPA	5069	broad.mit.edu	37	9	118982354	118982354	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:118982354C>T	uc004bjn.2	+	5	2438	c.2057C>T	c.(2056-2058)ACG>ATG	p.T686M	PAPPA_uc011lxp.1_Missense_Mutation_p.T381M|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	686					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GGCCACACAACGGACTCTGTG	0.577													29	79					0	0	0.002096	0	0
ASTN2	23245	broad.mit.edu	37	9	119977015	119977015	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:119977015G>A	uc004bjs.1	-	3	738	c.637C>T	c.(637-639)CTC>TTC	p.L213F	ASTN2_uc004bjr.1_Missense_Mutation_p.L213F|ASTN2_uc004bjt.1_Missense_Mutation_p.L213F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	213	Helical; (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						AGCGCGATGAGGCCACCCTGG	0.612													5	26					0	0	0.000602	0	0
NUP188	23511	broad.mit.edu	37	9	131760848	131760848	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:131760848G>A	uc004bws.1	+	32	3483	c.3461G>A	c.(3460-3462)CGC>CAC	p.R1154H	NUP188_uc004bwu.2_Missense_Mutation_p.R497H	NM_015354	NP_056169	Q5SRE5	NU188_HUMAN	nucleoporin 188kDa	1154					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|kidney(1)|breast(1)	7						AACTGCCTTCGCCTTGGCTCC	0.582													21	50					0	0	0.004656	0	0
TRAF2	7186	broad.mit.edu	37	9	139818388	139818388	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:139818388C>T	uc010nbu.2	+	11	1396	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F	TRAF2_uc004cjv.2_Missense_Mutation_p.S408F|TRAF2_uc011mek.1_Missense_Mutation_p.S397F|TRAF2_uc010nbw.2_Missense_Mutation_p.S383F	NM_021138	NP_066961	Q12933	TRAF2_HUMAN	TNF receptor-associated factor 2	408	MATH.				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cellular protein complex assembly|induction of apoptosis by extracellular signals|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|protein autoubiquitination|protein homotrimerization|protein K63-linked ubiquitination|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane	CD40 receptor binding|enzyme binding|protein binding|signal transducer activity|sphingolipid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.229)	OV - Ovarian serous cystadenocarcinoma(145;4.48e-06)|Epithelial(140;9.55e-06)		ACACACCTGTCCCTCTTCTTT	0.627													8	30					0	0	0.003080	0	0
ABCA2	20	broad.mit.edu	37	9	139912350	139912350	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:139912350G>A	uc011mem.1	-	15	2245	c.2097C>T	c.(2095-2097)TTC>TTT	p.F699F	ABCA2_uc011mel.1_Silent_p.F700F|ABCA2_uc004ckl.1_Silent_p.F630F|ABCA2_uc004ckm.1_Silent_p.F730F|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	699	Helical; (Potential).				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		TGACAAACAGGAAGCTGCGGG	0.552													6	10					0	0	0.001168	0	0
PNPLA7	375775	broad.mit.edu	37	9	140414475	140414475	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr9:140414475G>A	uc004cnf.2	-	10	1240	c.903C>T	c.(901-903)CTC>CTT	p.L301L	PNPLA7_uc011mfa.1_Silent_p.L32L|PNPLA7_uc010ncj.1_Silent_p.L326L	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	301					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		CTACAGACACGAGAGGGATGG	0.597													37	104					0	0	0.007835	0	0
MOSPD2	158747	broad.mit.edu	37	X	14913434	14913434	+	Silent	SNP	T	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:14913434T>A	uc004cwi.2	+	4	328	c.240T>A	c.(238-240)CTT>CTA	p.L80L	MOSPD2_uc004cwj.2_Silent_p.L17L	NM_152581	NP_689794	Q8NHP6	MSPD2_HUMAN	motile sperm domain containing 2	80						integral to membrane	structural molecule activity			lung(1)	1	Hepatocellular(33;0.183)					TTTTAGACCTTAATGAATCCT	0.294													49	131					0	0	0.003610	0	0
REPS2	9185	broad.mit.edu	37	X	17152027	17152027	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:17152027G>A	uc004cxv.1	+	15	1830	c.1659G>A	c.(1657-1659)AAG>AAA	p.K553K	REPS2_uc004cxw.1_Silent_p.K552K|REPS2_uc011miw.1_Silent_p.K351K	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	553	Interaction with RALBP1.				epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					GTCCAGCAAAGAAGGTAAGGT	0.512													25	78					0	0	0.003954	0	0
NHS	4810	broad.mit.edu	37	X	17744574	17744574	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:17744574G>A	uc004cxx.2	+	6	2623	c.2285G>A	c.(2284-2286)GGA>GAA	p.G762E	NHS_uc011mix.1_Missense_Mutation_p.G783E|NHS_uc004cxy.2_Missense_Mutation_p.G606E|NHS_uc004cxz.2_Missense_Mutation_p.G585E|NHS_uc004cya.2_Missense_Mutation_p.G485E	NM_198270	NP_938011	Q6T4R5	NHS_HUMAN	Nance-Horan syndrome protein isoform 1	762						nucleus				skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	Hepatocellular(33;0.183)					GACACGGAAGGATACTATACC	0.493													23	76					0	0	0.002299	0	0
GPR64	10149	broad.mit.edu	37	X	19031830	19031830	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:19031830G>A	uc004cyx.2	-	16	1237	c.1073C>T	c.(1072-1074)ACT>ATT	p.T358I	GPR64_uc004cyy.2_Missense_Mutation_p.T355I|GPR64_uc004cyz.2_Missense_Mutation_p.T344I|GPR64_uc004czb.2_Missense_Mutation_p.T358I|GPR64_uc004czc.2_Missense_Mutation_p.T342I|GPR64_uc004czd.2_Missense_Mutation_p.T334I|GPR64_uc004cze.2_Missense_Mutation_p.T328I|GPR64_uc004czf.2_Missense_Mutation_p.T320I|GPR64_uc004cza.2_Missense_Mutation_p.T336I|GPR64_uc004cyw.2_Missense_Mutation_p.T342I|GPR64_uc010nfj.2_Missense_Mutation_p.T328I	NM_001079858	NP_001073327	Q8IZP9	GPR64_HUMAN	G protein-coupled receptor 64 isoform 1	358	Extracellular (Potential).				neuropeptide signaling pathway|spermatogenesis	cytoplasm|integral to plasma membrane	G-protein coupled receptor activity				0	Hepatocellular(33;0.183)					TGCGCTGGTAGTGTTGACATT	0.522													24	64					0	0	0.004656	0	0
ZFX	7543	broad.mit.edu	37	X	24229378	24229378	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:24229378C>T	uc004dbf.2	+	9	2561	c.2303C>T	c.(2302-2304)TCC>TTC	p.S768F	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Missense_Mutation_p.S807F|ZFX_uc010nfz.2_Missense_Mutation_p.S424F	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	768	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						CACGTTATTTCCATTCACACG	0.433													21	50					0	0	0.002299	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157474	26157474	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:26157474G>A	uc004dbq.1	+	2	559	c.372G>A	c.(370-372)ACG>ACA	p.T124T		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	124	MAGE.						protein binding			central_nervous_system(1)	1						AGTATGAAACGAAAGAGCCAA	0.423													4	6					0	0	0.000248	0	0
MAGEB4	4115	broad.mit.edu	37	X	30260907	30260907	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:30260907G>A	uc004dcb.2	+	1	739	c.655G>A	c.(655-657)GAA>AAA	p.E219K	MAGEB1_uc004dcc.2_5'Flank|MAGEB1_uc004dcd.2_5'Flank	NM_002367	NP_002358	O15481	MAGB4_HUMAN	melanoma antigen family B, 4	219	MAGE.									ovary(1)	1						CCGTGAAGAGGAAATCTGGGA	0.498													21	54					0	0	0.002299	0	0
FAM47C	442444	broad.mit.edu	37	X	37029243	37029243	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:37029243G>A	uc004ddl.1	+	1	2774	c.2760G>A	c.(2758-2760)GGG>GGA	p.G920G		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	920										ovary(3)	3						ACTTGGACGGGAAAATCCAGA	0.453													12	50					0	0	0.001368	0	0
GPR34	2857	broad.mit.edu	37	X	41555639	41555639	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:41555639G>A	uc004dfp.3	+	3	1037	c.753G>A	c.(751-753)AGG>AGA	p.R251R	CASK_uc004dfl.3_Intron|CASK_uc004dfm.3_Intron|CASK_uc004dfn.3_Intron|GPR34_uc004dfq.3_Silent_p.R251R|GPR34_uc010nhg.2_Silent_p.R251R|GPR34_uc004dfr.3_Silent_p.R251R	NM_001097579	NP_001091048	Q9UPC5	GPR34_HUMAN	G protein-coupled receptor 34	251	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						TTTCTAAAAGGAGGTCAAAAT	0.303													8	17					0	0	0.004482	0	0
XIST	7503	broad.mit.edu	37	X	73064192	73064192	+	RNA	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:73064192C>T	uc004ebm.1	-	1		c.8397G>A				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AGTGGGTACTCCTTGTTGAAA	0.403													13	43					0	0	0.001855	0	0
XIST	7503	broad.mit.edu	37	X	73071335	73071335	+	RNA	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:73071335G>A	uc004ebm.1	-	1		c.1254C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						CGCCATTTTGGACAACCTAAC	0.498													47	89					0	0	0.003610	0	0
ATRX	546	broad.mit.edu	37	X	76849222	76849222	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:76849222C>T	uc004ecp.3	-	26	6286	c.6054G>A	c.(6052-6054)GGG>GGA	p.G2018G	ATRX_uc004ecq.3_Silent_p.G1980G|ATRX_uc004eco.3_Silent_p.G1803G	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2018					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GTACCATTTTCCCAGAATGCT	0.363			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						13	31					0	0	0.002450	0	0
PGK1	5230	broad.mit.edu	37	X	77378785	77378785	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:77378785G>C	uc004ecz.3	+	8	1022	c.850G>C	c.(850-852)GTT>CTT	p.V284L	PGK1_uc010nlz.2_RNA|PGK1_uc011mqq.1_Missense_Mutation_p.V256L	NM_000291	NP_000282	P00558	PGK1_HUMAN	phosphoglycerate kinase 1	284					gluconeogenesis|glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			upper_aerodigestive_tract(1)|ovary(1)	2						TACCTTGCCTGTTGACTTTGT	0.473													10	28					0	0	0.000978	0	0
CYSLTR1	10800	broad.mit.edu	37	X	77528585	77528585	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:77528585G>A	uc004edb.2	-	3	1059	c.659C>T	c.(658-660)TCA>TTA	p.S220L	CYSLTR1_uc010nma.2_Missense_Mutation_p.S220L|CYSLTR1_uc010nmb.2_Missense_Mutation_p.S220L	NM_006639	NP_006630	Q9Y271	CLTR1_HUMAN	cysteinyl leukotriene receptor 1	220	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|respiratory gaseous exchange	integral to plasma membrane|membrane fraction	leukotriene receptor activity			ovary(1)	1					Amlexanox(DB01025)|Cinalukast(DB00587)|Montelukast(DB00471)|Nedocromil(DB00716)|Pranlukast(DB01411)|Zafirlukast(DB00549)	TTTTTTCATTGATTTTTTTAG	0.328													6	13					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	X	80185171	80185171	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:80185171G>A	uc004eec.1	+	1	244	c.70G>A	c.(70-72)GAA>AAA	p.E24K						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;																		GGGCAGTCTGGAAACCAAGTA	0.438													7	15					0	0	0.004482	0	0
POF1B	79983	broad.mit.edu	37	X	84614582	84614582	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:84614582C>T	uc004eer.2	-	4	557	c.411G>A	c.(409-411)AGG>AGA	p.R137R	POF1B_uc004ees.2_Silent_p.R137R	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	137							actin binding				0						CTACATATTTCCTAATAGTGG	0.308													21	47					0	0	0.003330	0	0
TEX13A	56157	broad.mit.edu	37	X	104464777	104464777	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:104464777G>A	uc004ema.2	-	2	417	c.305C>T	c.(304-306)TCA>TTA	p.S102L	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.S102L	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	102						intracellular	zinc ion binding			ovary(2)	2						CTGTGCGGCTGATTTGTGCAG	0.637													6	12					0	0	0.001168	0	0
ALG13	79868	broad.mit.edu	37	X	110971527	110971527	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:110971527G>A	uc011msy.1	+	19	2396	c.2362G>A	c.(2362-2364)GAA>AAA	p.E788K	ALG13_uc011msx.1_Missense_Mutation_p.E684K|ALG13_uc011msz.1_Missense_Mutation_p.E710K|ALG13_uc011mta.1_Missense_Mutation_p.E684K|ALG13_uc011mtb.1_Missense_Mutation_p.E684K			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	788					dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						TGGCCAGAGTGAAAATGGTGA	0.428													5	24					0	0	0.000602	0	0
SLC6A14	11254	broad.mit.edu	37	X	115568978	115568978	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:115568978G>A	uc004eqi.2	+	2	173	c.69G>A	c.(67-69)GAG>GAA	p.E23E	SLC6A14_uc011mtm.1_RNA	NM_007231	NP_009162	Q9UN76	S6A14_HUMAN	solute carrier family 6 (amino acid	23	Cytoplasmic (Potential).				cellular amino acid metabolic process|response to toxin	integral to membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)|pancreas(1)	3					L-Proline(DB00172)	CTTCATCAGAGAATTTCCATG	0.388													58	147					0	0	0.003610	0	0
CT47B1	643311	broad.mit.edu	37	X	120007795	120007795	+	Silent	SNP	T	C	C			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:120007795T>C	uc011muc.1	-	2	1110	c.855A>G	c.(853-855)AAA>AAG	p.K285K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	285	Potential.										0						CATCCTTCTCTTTTTCTTGTT	0.443													4	608					0	0	0.000248	0	0
CT47B1	643311	broad.mit.edu	37	X	120009239	120009239	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:120009239C>T	uc011muc.1	-	1	541	c.286G>A	c.(286-288)GAG>AAG	p.E96K		NM_001145718	NP_001139190	P0C2W7	CT47B_HUMAN	cancer/testis antigen family 147, member B1	96	Poly-Glu.										0						tcttcctcctcctcctcttcc	0.587													6	13					0	0	0.001168	0	0
TFDP3	51270	broad.mit.edu	37	X	132352192	132352192	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:132352192G>A	uc004exb.1	-	1	185	c.96C>T	c.(94-96)TCC>TCT	p.S32S		NM_016521	NP_057605	Q5H9I0	TFDP3_HUMAN	transcription factor Dp family, member 3	32						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GGTTCACGGTGGAGGTGTGAA	0.517													4	6					0	0	0.000248	0	0
SAGE1	55511	broad.mit.edu	37	X	134992694	134992695	+	Missense_Mutation	DNP	CC	TT	TT	rs147236070	byFrequency	TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:134992694_134992695CC>TT	uc004ezh.2	+	16	2152_2153	c.1985_1986CC>TT	c.(1984-1986)TCC>TTT	p.S662F	SAGE1_uc010nry.1_Missense_Mutation_p.S631F|SAGE1_uc011mvv.1_Missense_Mutation_p.S286F	NM_018666	NP_061136	Q9NXZ1	SAGE1_HUMAN	sarcoma antigen 1	662										ovary(2)|skin(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GGAATTTCATCCACGATTACCA	0.436													22	84					0	0	0.004672	0	0
GPR112	139378	broad.mit.edu	37	X	135488088	135488088	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:135488088G>A	uc004ezu.1	+	23	9183	c.8892G>A	c.(8890-8892)AGG>AGA	p.R2964R	GPR112_uc010nsb.1_Silent_p.R2759R	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2964	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GACCCATGAGGAACTTTTTCT	0.453													28	90					0	0	0.008361	0	0
GPR101	83550	broad.mit.edu	37	X	136113428	136113428	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:136113428G>A	uc011mwh.1	-	1	406	c.406C>T	c.(406-408)CCT>TCT	p.P136S		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	136	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TAGGAGAGAGGGTGGATGATG	0.597													4	18					0	0	0.000602	0	0
MAGEC3	139081	broad.mit.edu	37	X	140953359	140953359	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:140953359G>A	uc011mwp.1	+	2	226	c.226G>A	c.(226-228)GAT>AAT	p.D76N		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	76										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGCGAATGGATAGTCTTGT	0.507													18	56					0	0	0.002299	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869662	151869662	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:151869662C>T	uc004ffq.1	+	3	546	c.352C>T	c.(352-354)CAT>TAT	p.H118Y	MAGEA6_uc004ffr.1_Missense_Mutation_p.H118Y|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	118	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CAAGTTGGTTCATTTTCTGCT	0.532													39	89					0	0	0.003214	0	0
IDH3G	3421	broad.mit.edu	37	X	153053002	153053002	+	Silent	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:153053002G>A	uc004fip.2	-	8	777	c.591C>T	c.(589-591)TCC>TCT	p.S197S	IDH3G_uc004fio.2_Silent_p.S139S|IDH3G_uc004fiq.2_Silent_p.S197S|IDH3G_uc010num.2_Silent_p.S139S|IDH3G_uc004fir.2_Silent_p.S139S|IDH3G_uc004fit.1_Silent_p.S197S|IDH3G_uc004fis.2_Silent_p.S139S|IDH3G_uc004fiu.2_5'UTR	NM_004135	NP_004126	P51553	IDH3G_HUMAN	isocitrate dehydrogenase 3 (NAD+) gamma isoform	197					carbohydrate metabolic process|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleolus	ATP binding|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	CAATGCGCAGGGACTTGGCCT	0.592													6	20					0	0	0.001168	0	0
FLNA	2316	broad.mit.edu	37	X	153595823	153595823	+	Silent	SNP	C	T	T			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:153595823C>T	uc004fkk.2	-	5	1059	c.810G>A	c.(808-810)AAG>AAA	p.K270K	FLNA_uc010nuu.1_Silent_p.K270K	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	270	Actin-binding.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GAGCCCCTGGCTTCAGCTTGG	0.637													14	46					0	0	0.004007	0	0
TMLHE	55217	broad.mit.edu	37	X	154754275	154754275	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chrX:154754275G>A	uc004fnn.2	-	3	366	c.200C>T	c.(199-201)ACC>ATC	p.T67I	TMLHE_uc004fno.2_Missense_Mutation_p.T67I|TMLHE_uc004fnp.3_Missense_Mutation_p.T67I	NM_018196	NP_060666	Q9NVH6	TMLH_HUMAN	trimethyllysine hydroxylase, epsilon	67					carnitine biosynthetic process	mitochondrial matrix	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|trimethyllysine dioxygenase activity			ovary(1)	1	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Succinic acid(DB00139)|Vitamin C(DB00126)	GCGCATCACGGTATTAGCATA	0.428													26	51					0	0	0.006320	0	0
RAB11FIP2	22841	broad.mit.edu	37	10	119805588	119805588	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr10:119805588delG	uc001ldj.1	-	1	527	c.87delC	c.(85-87)GGCfs	p.G29fs	RAB11FIP2_uc009xyz.1_Frame_Shift_Del_p.G29fs|CASC2_uc001ldm.3_5'Flank|CASC2_uc009xzc.2_5'Flank|CASC2_uc001ldk.2_5'Flank|CASC2_uc009xza.2_5'Flank|CASC2_uc009xzb.2_5'Flank	NM_014904	NP_055719	Q7L804	RFIP2_HUMAN	RAB11 family interacting protein 2	29	C2.|Necessary for its cellular translocation to the plasma membrane.				protein transport	plasma membrane|recycling endosome membrane	protein homodimerization activity				0		Colorectal(252;0.235)		all cancers(201;0.0238)		TACCACTTTTGCCTTTTGGCT	0.488													39	147	---	---	---	---					
DPY19L2	283417	broad.mit.edu	37	12	63994127	63994134	+	Frame_Shift_Del	DEL	AAATGATT	-	-			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr12:63994127_63994134delAAATGATT	uc001srp.1	-	13	1492_1499	c.1311_1318delAATCATTT	c.(1309-1320)ACAATCATTTTGfs	p.T437fs	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	437_440	Helical; (Potential).				multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		AGAAATTTCAAAATGATTGTTCCACACC	0.284													12	57	---	---	---	---					
MFAP4	4239	broad.mit.edu	37	17	19290122	19290123	+	In_Frame_Ins	INS	-	AGC	AGC			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr17:19290122_19290123insAGC	uc002gvt.2	-	2	60_61	c.35_36insGCT	c.(34-36)CTT>CTGCTT	p.12_12L>LL	MFAP4_uc002gvr.2_RNA|MFAP4_uc002gvs.2_In_Frame_Ins_p.36_36L>LL	NM_002404	NP_002395	P55083	MFAP4_HUMAN	microfibrillar-associated protein 4 precursor	12					cell adhesion|signal transduction	microfibril	receptor binding				0	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					GCGTGGAGAGAAGCAGCAGCAG	0.649													3	4	---	---	---	---					
SMCHD1	23347	broad.mit.edu	37	18	2688685	2688685	+	Frame_Shift_Del	DEL	T	-	-			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr18:2688685delT	uc002klm.3	+	7	1002	c.813delT	c.(811-813)GATfs	p.D271fs		NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	271					chromosome organization		ATP binding				0						CTAAAGAAGATTTTGAGAAGA	0.279													2	4	---	---	---	---					
PRR12	57479	broad.mit.edu	37	19	50101123	50101123	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:50101123delC	uc002poo.3	+	4	3531	c.3531delC	c.(3529-3531)CGCfs	p.R1177fs		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	356	A.T hook 1.|Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CCCGGATCCGCCCCCTGGAGG	0.771													2	4	---	---	---	---					
FPR1	2357	broad.mit.edu	37	19	52249827	52249839	+	Frame_Shift_Del	DEL	GGCTCACGGTGCG	-	-	rs151277630	byFrequency	TCGA-ER-A19K-01A-21D-A197-08	TCGA-ER-A19K-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	e257965e-42f7-4603-a41c-63b5ae2dcf00	f65de9f3-fe3c-4045-b61d-1f8dce230c98	g.chr19:52249827_52249839delGGCTCACGGTGCG	uc002pxq.2	-	2	504_516	c.409_421delCGCACCGTGAGCC	c.(409-423)CGCACCGTGAGCCTGfs	p.R137fs		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	137_141	Helical; Name=4; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	TTCTTGGCCAGGCTCACGGTGCGGTGGTTCTGG	0.545													7	37	---	---	---	---					
