Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PKN2	5586	broad.mit.edu	37	1	89298451	89298451	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:89298451G>A	uc001dmn.2	+	20	2929	c.2587G>A	c.(2587-2589)GAG>AAG	p.E863K	PKN2_uc010osp.1_Missense_Mutation_p.E847K|PKN2_uc010osq.1_Missense_Mutation_p.E706K|PKN2_uc009wcv.2_Missense_Mutation_p.E815K|PKN2_uc010osr.1_Missense_Mutation_p.E528K	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	863	Protein kinase.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		TGATGATGAAGAGGAAGTTTT	0.338000													24	66					0	0	0.030593	0	0
NBPF10	100132406	broad.mit.edu	37	1	145360574	145360574	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:145360574G>C	uc001end.3	+	76	9459	c.9424G>C	c.(9424-9426)GAT>CAT	p.D3142H	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron|NBPF10_uc001enc.2_Intron|NBPF10_uc010oyq.1_Intron|NBPF10_uc010oyr.1_Missense_Mutation_p.D440H	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3067											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		GGAGCTGCTGGATGAGAAAGG	0.483000													4	28					0	0	0.009096	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145474054	145474054	+	Silent	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:145474054C>G	uc001enq.1	+	4	2019	c.726C>G	c.(724-726)CTC>CTG	p.L242L	NBPF10_uc001emp.3_Intron	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	242	Pro-rich.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAAAACCACTCAAAAGGCTCA	0.607000													98	270					0	0	0.014410	0	0
TCHH	7062	broad.mit.edu	37	1	152080033	152080033	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:152080033C>G	uc001ezp.2	-	2	5660	c.5660G>C	c.(5659-5661)CGC>CCC	p.R1887P	TCHH_uc009wne.1_Missense_Mutation_p.R1887P	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1887	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTTCTGCTGGCGGCGGATGTG	0.557000													102	392					0	0	0.014410	0	0
THBS3	7059	broad.mit.edu	37	1	155165884	155165884	+	Silent	SNP	C	T	T	rs146591443		TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:155165884C>T	uc001fix.2	-	22	2729	c.2706G>A	c.(2704-2706)GCG>GCA	p.A902A	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Silent_p.A893A|THBS3_uc001fiz.2_Silent_p.A865A|THBS3_uc001fiy.2_Silent_p.A431A|THBS3_uc010pfu.1_Silent_p.A782A	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	902	TSP C-terminal.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CCCCAGAATCCGCCACAAGCT	0.527000													14	193					0	0	0.043863	0	0
YY1AP1	55249	broad.mit.edu	37	1	155631174	155631174	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:155631174C>A	uc001fln.2	-	10	1082	c.1058G>T	c.(1057-1059)TGC>TTC	p.C353F	YY1AP1_uc001flg.2_Missense_Mutation_p.C92F|YY1AP1_uc010pgg.1_Missense_Mutation_p.C192F|YY1AP1_uc010pgh.1_Missense_Mutation_p.C296F|YY1AP1_uc010pgi.1_Missense_Mutation_p.C445F|YY1AP1_uc001flh.2_Missense_Mutation_p.C425F|YY1AP1_uc009wqt.2_Missense_Mutation_p.C276F|YY1AP1_uc001flk.2_Missense_Mutation_p.C296F|YY1AP1_uc001fll.2_Missense_Mutation_p.C307F|YY1AP1_uc009wqv.2_Missense_Mutation_p.C24F|YY1AP1_uc001flm.2_Missense_Mutation_p.C296F|YY1AP1_uc001fli.2_Missense_Mutation_p.C307F|YY1AP1_uc009wqu.2_Missense_Mutation_p.C140F|YY1AP1_uc001flj.2_Missense_Mutation_p.C287F|YY1AP1_uc009wqw.2_Missense_Mutation_p.C276F|YY1AP1_uc001flo.2_Missense_Mutation_p.C241F|YY1AP1_uc001flp.2_Missense_Mutation_p.C307F|YY1AP1_uc010pgj.1_Missense_Mutation_p.C373F|YY1AP1_uc009wqx.2_Missense_Mutation_p.C445F	NM_139118	NP_620829	Q9H869	YYAP1_HUMAN	YY1-associated protein isoform 2	353					regulation of cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					CTCTTCACAGCATTTTCCTAG	0.443000													19	345					0.000375601	0.000393487	0.016522	1	0
IGSF8	93185	broad.mit.edu	37	1	160063722	160063722	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:160063722C>A	uc001fva.2	-	3	727	c.682G>T	c.(682-684)GTG>TTG	p.V228L	IGSF8_uc001fuz.2_Missense_Mutation_p.V228L|IGSF8_uc009wtf.2_Missense_Mutation_p.V228L	NM_052868	NP_443100	Q969P0	IGSF8_HUMAN	immunoglobulin superfamily, member 8	228	Extracellular (Potential).|Ig-like C2-type 2.				cell proliferation|cellular component movement|nervous system development|single fertilization|skeletal muscle tissue development	integral to membrane	protein binding				0	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CCAGCCTCCACGGCCAAGTCT	0.627000													18	78					8.04996e-18	9.23995e-18	0.012319	1	0
COPA	1314	broad.mit.edu	37	1	160281796	160281796	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:160281796C>T	uc009wti.2	-	11	1332	c.938G>A	c.(937-939)GGT>GAT	p.G313D	COPA_uc001fvv.3_Missense_Mutation_p.G313D|COPA_uc009wtj.1_Missense_Mutation_p.G259D	NM_004371	NP_004362	P53621	COPA_HUMAN	coatomer protein complex, subunit alpha isoform	313					COPI coating of Golgi vesicle|intracellular protein transport|pancreatic juice secretion|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat|cytosol|extracellular space|microsome|soluble fraction	hormone activity|structural molecule activity			ovary(1)|skin(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CACAATCATACCACCATCATG	0.448000													138	46					0	0	0.014410	0	0
FCGR3A	2214	broad.mit.edu	37	1	161512967	161512967	+	Silent	SNP	T	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:161512967T>A	uc001gat.3	-	6	737	c.600A>T	c.(598-600)TCA>TCT	p.S200S	FCGR3A_uc001gar.2_Silent_p.S236S|FCGR3A_uc001gas.2_Silent_p.S235S|FCGR3A_uc009wuh.2_Silent_p.S199S|FCGR3A_uc009wui.2_Silent_p.S200S	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	200	Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GAAAGAATGATGAGATGGTTG	0.423000													8	381					0	0	0.010729	0	0
ADCY10	55811	broad.mit.edu	37	1	167787500	167787500	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:167787500G>A	uc001ger.2	-	31	4590	c.4292C>T	c.(4291-4293)GCC>GTC	p.A1431V	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.A1339V|ADCY10_uc010plj.1_Missense_Mutation_p.A1278V	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1431					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						CTGAAGTCTGGCATACCTGCA	0.383000													22	17					0	0	0.018920	0	0
ASTN1	460	broad.mit.edu	37	1	176915076	176915076	+	Silent	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:176915076C>G	uc001glc.2	-	13	2447	c.2235G>C	c.(2233-2235)CTG>CTC	p.L745L	ASTN1_uc001glb.1_Silent_p.L745L|ASTN1_uc001gld.1_Silent_p.L745L|ASTN1_uc009wwx.1_Silent_p.L745L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	753					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ATGTTCCTTTCAGCACCTGTC	0.448000													26	448					0	0	0.021022	0	0
KISS1	3814	broad.mit.edu	37	1	204161910	204161910	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:204161910C>T	uc001har.2	-	2	249	c.95G>A	c.(94-96)AGA>AAA	p.R32K		NM_002256	NP_002247	Q15726	KISS1_HUMAN	KiSS-1 metastasis-suppressor	32					cytoskeleton organization	extracellular region	protein binding			ovary(1)	1	all_cancers(21;0.0165)|Breast(84;0.179)|all_epithelial(62;0.242)	Breast(1374;9.42e-05)	KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.069)|Kidney(21;0.0934)|Epithelial(59;0.239)	Colorectal(1306;0.0129)		ACCTGTGGGTCTAGAATTCCC	0.502000													25	6					0	0	0.045705	0	0
CENPF	1063	broad.mit.edu	37	1	214813510	214813510	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:214813510A>C	uc001hkm.2	+	12	2003	c.1829A>C	c.(1828-1830)GAA>GCA	p.E610A		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	610	Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AAAGAATATGAAGAATTGAAA	0.323000													7	24					0	0	0.038147	0	0
TTC13	79573	broad.mit.edu	37	1	231094024	231094024	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:231094024C>T	uc001huf.3	-	3	419	c.388G>A	c.(388-390)GAA>AAA	p.E130K	TTC13_uc009xfi.2_Missense_Mutation_p.E130K|TTC13_uc009xfj.2_RNA|TTC13_uc001hug.3_Missense_Mutation_p.E130K|TTC13_uc009xfk.1_Intron	NM_024525	NP_078801	Q8NBP0	TTC13_HUMAN	tetratricopeptide repeat domain 13 isoform a	130							binding			ovary(1)|skin(1)	2	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)		COAD - Colon adenocarcinoma(196;0.243)		CTCTTCTGTTCTGCAATAGAC	0.333000													3	48					0	0	0.009096	0	0
SDCCAG8	10806	broad.mit.edu	37	1	243471466	243471466	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr1:243471466G>C	uc001hzw.2	+	8	1072	c.916G>C	c.(916-918)GAA>CAA	p.E306Q	SDCCAG8_uc010pyk.1_Missense_Mutation_p.E161Q|SDCCAG8_uc010pyl.1_Missense_Mutation_p.E118Q|SDCCAG8_uc001hzx.2_Missense_Mutation_p.E118Q	NM_006642	NP_006633	Q86SQ7	SDCG8_HUMAN	serologically defined colon cancer antigen 8	306	Sufficient for homodimerization (By similarity).				establishment of cell polarity|G2/M transition of mitotic cell cycle|tube formation	cell-cell junction|centriole|cytosol	protein binding				0	all_cancers(71;0.000545)|all_epithelial(71;0.000509)|all_lung(81;0.0821)|Ovarian(71;0.0919)|all_neural(11;0.101)|Breast(184;0.218)	all_cancers(173;0.00395)	all cancers(7;1.58e-07)|GBM - Glioblastoma multiforme(7;5.12e-06)|OV - Ovarian serous cystadenocarcinoma(106;0.00392)	COAD - Colon adenocarcinoma(196;0.145)		GCAGACCATCGAAAGACTGGT	0.423000													58	154					0	0	0.014410	0	0
PCDH15	65217	broad.mit.edu	37	10	55566808	55566808	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr10:55566808C>T	uc010qhq.1	-	36	4975	c.4580G>A	c.(4579-4581)TGT>TAT	p.C1527Y	PCDH15_uc010qhr.1_Missense_Mutation_p.C1522Y	NM_001142771	NP_001136243	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD3-1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTTTCTCTGACATTCAGGAGC	0.418000										HNSCC(58;0.16)			8	9					0	0	0.038147	0	0
C11orf46	120534	broad.mit.edu	37	11	30352518	30352518	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:30352518G>A	uc001mso.1	+	2	187	c.23G>A	c.(22-24)GGA>GAA	p.G8E		NM_152316	NP_689529	Q8N8R7	CK046_HUMAN	hypothetical protein LOC120534	8											0						TGTTCAGTTGGAGTCCAGCTT	0.368000													10	38					0	0	0.010729	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136474	40136474	+	Missense_Mutation	SNP	C	T	T	rs138717868		TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:40136474C>T	uc001mxa.1	-	2	3333	c.1369G>A	c.(1369-1371)GTC>ATC	p.V457I	LRRC4C_uc001mxc.1_Missense_Mutation_p.V453I|LRRC4C_uc001mxd.1_Missense_Mutation_p.V453I|LRRC4C_uc001mxb.1_Missense_Mutation_p.V453I	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	457					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCTACTGTGACGGTTGAAAAG	0.493000													29	51					0	0	0.012213	0	0
OR4C3	256144	broad.mit.edu	37	11	48346857	48346857	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:48346857G>A	uc010rhv.1	+	1	365	c.365G>A	c.(364-366)TGC>TAC	p.C122Y		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TATGAGTGCTGCATGGCTCAG	0.458000													12	235					0	0	0.034045	0	0
UVRAG	7405	broad.mit.edu	37	11	75590991	75590991	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:75590991C>A	uc001oxc.2	+	4	580	c.339C>A	c.(337-339)TTC>TTA	p.F113L	UVRAG_uc010rrw.1_Missense_Mutation_p.F12L	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	113	C2.				DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						TGTCTTGTTTCGTGGTGAAGA	0.438000													36	710					5.43694e-19	6.2954e-19	0.023175	1	0
TSKU	25987	broad.mit.edu	37	11	76507446	76507446	+	Silent	SNP	G	A	A	rs147023916		TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:76507446G>A	uc001oxt.2	+	2	958	c.786G>A	c.(784-786)TCG>TCA	p.S262S		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	262	LRR 9.					extracellular region					0	Ovarian(111;0.112)					TGGACCTGTCGGGCAACCCCA	0.652000													17	259					0	0	0.038395	0	0
ODZ4	26011	broad.mit.edu	37	11	78381398	78381398	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:78381398G>C	uc001ozl.3	-	32	6455	c.5992C>G	c.(5992-5994)CTC>GTC	p.L1998V	ODZ4_uc001ozk.3_Missense_Mutation_p.L223V|ODZ4_uc009yvb.1_Missense_Mutation_p.L582V	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1998	YD 9.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GTGTGAAGGAGGTGCCCATCC	0.537000													6	65					0	0	0.029380	0	0
PRSS23	11098	broad.mit.edu	37	11	86519507	86519507	+	Silent	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:86519507G>C	uc001pcb.2	+	2	1038	c.822G>C	c.(820-822)GGG>GGC	p.G274G	PRSS23_uc001pcc.1_Intron|PRSS23_uc010rts.1_Silent_p.G242G	NM_007173	NP_009104	O95084	PRS23_HUMAN	protease, serine, 23 precursor	274					proteolysis	extracellular region|nucleus	serine-type endopeptidase activity			central_nervous_system(1)|pancreas(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				AGCTGCCAGGGGGCAGAATTC	0.488000													4	151					0	0	0.009096	0	0
KIAA1377	57562	broad.mit.edu	37	11	101832787	101832787	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:101832787G>A	uc001pgm.2	+	6	1291	c.1021G>A	c.(1021-1023)GAA>AAA	p.E341K	KIAA1377_uc001pgn.2_Missense_Mutation_p.E297K|KIAA1377_uc010run.1_Missense_Mutation_p.E142K|KIAA1377_uc009yxa.1_Missense_Mutation_p.E142K	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	341							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		GCCTTCATGGGAATATTTTAA	0.323000													10	172					0	0	0.008291	0	0
MMP13	4322	broad.mit.edu	37	11	102818680	102818680	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:102818680G>C	uc001phl.2	-	8	1179	c.1151C>G	c.(1150-1152)GCA>GGA	p.A384G		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	384	Hemopexin-like 3.				collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GTGAACAGCTGCACTTATCTT	0.433000													9	112					0	0	0.013537	0	0
SCN8A	6334	broad.mit.edu	37	12	52156432	52156432	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:52156432G>C	uc001ryw.2	+	15	2694	c.2516G>C	c.(2515-2517)GGG>GCG	p.G839A	SCN8A_uc010snl.1_Missense_Mutation_p.G704A|SCN8A_uc001ryy.2_Missense_Mutation_p.G704A	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	839	II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	GACGTGGAGGGGCTTTCAGTG	0.398000													8	54					0	0	0.038147	0	0
PDE1B	5153	broad.mit.edu	37	12	54967430	54967430	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:54967430C>G	uc001sgd.1	+	10	1167	c.1001C>G	c.(1000-1002)ACA>AGA	p.T334R	PDE1B_uc010soz.1_Missense_Mutation_p.T197R|PDE1B_uc010spa.1_Missense_Mutation_p.T293R|PDE1B_uc001sgf.2_Missense_Mutation_p.T197R|PDE1B_uc001sge.2_Missense_Mutation_p.T314R|PDE1B_uc009znq.2_Missense_Mutation_p.T130R	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	334	Catalytic (By similarity).				activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						GTGTTGGCCACAGACATGTCC	0.577000													46	191					0	0	0.014410	0	0
CCT2	10576	broad.mit.edu	37	12	69995079	69995079	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:69995079C>G	uc001svb.1	+	16	1676	c.1582C>G	c.(1582-1584)CGT>GGT	p.R528G	CCT2_uc009zrm.1_RNA|CCT2_uc009zrn.1_Missense_Mutation_p.N480K|CCT2_uc010stl.1_Missense_Mutation_p.R481G	NM_006431	NP_006422	P78371	TCPB_HUMAN	chaperonin containing TCP1, subunit 2	528					'de novo' posttranslational protein folding	nucleus	ATP binding|unfolded protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(2;7.7e-106)|Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.72e-18)|GBM - Glioblastoma multiforme(2;2.58e-10)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TCATAGGAAACGTGTCCCTGA	0.358000													35	56					0	0	0.042209	0	0
MYBPC1	4604	broad.mit.edu	37	12	102043099	102043099	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:102043099G>T	uc001tii.2	+	13	1285	c.1183G>T	c.(1183-1185)GGT>TGT	p.G395C	MYBPC1_uc001tif.1_Missense_Mutation_p.G408C|MYBPC1_uc001tig.2_Missense_Mutation_p.G420C|MYBPC1_uc010svq.1_Missense_Mutation_p.G382C|MYBPC1_uc001tih.2_Missense_Mutation_p.G420C|MYBPC1_uc001tij.2_Missense_Mutation_p.G395C|MYBPC1_uc010svr.1_Missense_Mutation_p.G395C|MYBPC1_uc010svs.1_Missense_Mutation_p.G395C|MYBPC1_uc010svt.1_Missense_Mutation_p.G383C|MYBPC1_uc010svu.1_Missense_Mutation_p.G376C|MYBPC1_uc001tik.2_Missense_Mutation_p.G369C	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	395	Ig-like C2-type 3.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						TAGAGTTGAGGGTAAAAAACA	0.343000													14	82					2.23348e-06	2.39691e-06	0.028581	1	0
APPL2	55198	broad.mit.edu	37	12	105600946	105600946	+	Missense_Mutation	SNP	G	A	A	rs143266379		TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:105600946G>A	uc001tlf.1	-	8	732	c.514C>T	c.(514-516)CGG>TGG	p.R172W	APPL2_uc010swt.1_Missense_Mutation_p.R129W|APPL2_uc001tlg.1_5'UTR|APPL2_uc010swu.1_Missense_Mutation_p.R178W|APPL2_uc009zuq.2_Missense_Mutation_p.R129W	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH	172	Required for RAB5A binding (By similarity).				cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGCTGCTTCCGCCGGGCCGCG	0.517000													3	75					0	0	0.014758	0	0
PPTC7	160760	broad.mit.edu	37	12	110983768	110983768	+	Silent	SNP	T	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:110983768T>G	uc001trh.1	-	3	747	c.519A>C	c.(517-519)TCA>TCC	p.S173S		NM_139283	NP_644812	Q8NI37	PPTC7_HUMAN	T-cell activation protein phosphatase 2C	173	PP2C-like.						metal ion binding|phosphoprotein phosphatase activity				0						GCTGCTCATCTGATCGGTGCA	0.562000													34	108					0	0	0.021022	0	0
TPCN1	53373	broad.mit.edu	37	12	113664682	113664682	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:113664682G>C	uc001tuw.2	+	2	322	c.25G>C	c.(25-27)GTG>CTG	p.V9L	TPCN1_uc001tux.2_Missense_Mutation_p.V81L	NM_017901	NP_060371	Q9ULQ1	TPC1_HUMAN	two pore segment channel 1 isoform 2	9	Cytoplasmic (Potential).					endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated ion channel activity			skin(2)|ovary(1)	3						GGATGACGACGTGCCGCTCAT	0.542000													13	76					0	0	0.038395	0	0
PIWIL1	9271	broad.mit.edu	37	12	130842043	130842043	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr12:130842043G>A	uc001uik.2	+	14	1700	c.1610G>A	c.(1609-1611)AGA>AAA	p.R537K	PIWIL1_uc001uij.1_Missense_Mutation_p.R537K	NM_004764	NP_004755	Q96J94	PIWL1_HUMAN	piwi-like 1	537					gene silencing by RNA|meiosis|multicellular organismal development|regulation of translation|spermatid development	chromatoid body|P granule	mRNA binding|piRNA binding|protein binding			ovary(2)	2	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.02e-06)|Epithelial(86;3.85e-05)|all cancers(50;4.65e-05)		GTGGATGACAGAACTGAAGCC	0.423000													3	65					0	0	0.004672	0	0
CENPJ	55835	broad.mit.edu	37	13	25480585	25480585	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr13:25480585C>G	uc001upt.3	-	7	1844	c.1591G>C	c.(1591-1593)GGG>CGG	p.G531R	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA|CENPJ_uc001upu.2_5'Flank	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	531					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		CTGGCCGGCCCTGTTGAAAGA	0.453000													26	92					0	0	0.019004	0	0
ATP11A	23250	broad.mit.edu	37	13	113470497	113470497	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr13:113470497C>G	uc001vsi.3	+	6	630	c.542C>G	c.(541-543)GCC>GGC	p.A181G	ATP11A_uc001vsj.3_Missense_Mutation_p.A181G|ATP11A_uc001vsm.1_Missense_Mutation_p.A57G	NM_015205	NP_056020	P98196	AT11A_HUMAN	ATPase, class VI, type 11A isoform a	181	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			large_intestine(2)|ovary(2)	4	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_lung(25;0.134)|all_epithelial(44;0.141)				GTCACCACCGCCAGCTTGGAT	0.562000													15	73					0	0	0.043863	0	0
ZBTB25	7597	broad.mit.edu	37	14	64954352	64954352	+	Silent	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr14:64954352G>A	uc001xhf.2	-	3	780	c.597C>T	c.(595-597)CCC>CCT	p.P199P	ZBTB25_uc001xhc.2_Intron|ZBTB25_uc001xhg.2_Silent_p.P199P	NM_006977	NP_008908	P24278	ZBT25_HUMAN	zinc finger protein 46	199						cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2				all cancers(60;0.00865)|OV - Ovarian serous cystadenocarcinoma(108;0.0102)|BRCA - Breast invasive adenocarcinoma(234;0.0469)		TGGAAACTGGGGGCTTCTGGT	0.572000													106	158					0	0	0.014410	0	0
MYO9A	4649	broad.mit.edu	37	15	72338208	72338208	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr15:72338208G>C	uc002atl.3	-	2	1170	c.697C>G	c.(697-699)CAG>GAG	p.Q233E	MYO9A_uc010biq.2_Intron|MYO9A_uc002ato.2_Missense_Mutation_p.Q233E|MYO9A_uc002atn.1_Missense_Mutation_p.Q233E	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	233	Myosin head-like 1.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						ACGATGCACTGATTCTTTTTG	0.438000													4	145					0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	15	102292797	102292797	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr15:102292797C>G	uc010usj.1	+	4	444	c.385C>G	c.(385-387)CCA>GCA	p.P129A	uc002bxo.2_RNA|uc002bxp.3_5'Flank|uc002bxt.2_5'Flank|uc002bxz.3_5'Flank|uc002byd.2_5'Flank|uc002bye.2_5'Flank|uc002byf.1_5'Flank|uc002byg.2_5'Flank|uc002byi.2_5'Flank|uc002byk.2_5'Flank|uc002bym.2_5'Flank|uc002byn.2_5'Flank|uc010usm.1_5'Flank					RecName: Full=Uncharacterized protein C15orf51.; Flags: Fragment;																		GAGCTGCTGTCCAACCTGCAC	0.597000													4	146					0	0	0.014758	0	0
FAM65A	79567	broad.mit.edu	37	16	67578658	67578658	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr16:67578658C>T	uc010vjp.1	+	16	2950	c.2854C>T	c.(2854-2856)CGG>TGG	p.R952W	FAM65A_uc002eth.2_Missense_Mutation_p.R932W|FAM65A_uc010cej.2_Missense_Mutation_p.R935W|FAM65A_uc010vjq.1_Missense_Mutation_p.R946W|FAM65A_uc002etk.2_Missense_Mutation_p.R930W	NM_024519	NP_078795	Q6ZS17	FA65A_HUMAN	hypothetical protein LOC79567	936						cytoplasm	binding			ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0474)|Epithelial(162;0.117)		GCGGCTGCTGCGGGAAGCCCG	0.657000													18	132					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	17	45127107	45127107	+	Missense_Mutation	SNP	C	G	G	rs147409399	by1000genomes	TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr17:45127107C>G	uc010wkj.1	+	2	659	c.305C>G	c.(304-306)ACC>AGC	p.T102S	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		CCTTCGTTCACCCAAGAGCAT	0.592000													4	102					0	0	0.014758	0	0
CDC27	996	broad.mit.edu	37	17	45214564	45214564	+	Missense_Mutation	SNP	A	T	T	rs78525224		TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr17:45214564A>T	uc002ild.3	-	14	1994	c.1867T>A	c.(1867-1869)TGT>AGT	p.C623S	CDC27_uc002ile.3_Missense_Mutation_p.C629S|CDC27_uc002ilf.3_Missense_Mutation_p.C622S|CDC27_uc010wkp.1_Missense_Mutation_p.C562S|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	623	TPR 5.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						TTTCGAAAACAAGCTAATGCT	0.378000													3	42					0	0	0.014758	0	0
AFG3L2	10939	broad.mit.edu	37	18	12367018	12367018	+	Silent	SNP	G	A	A	rs141538541	byFrequency	TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr18:12367018G>A	uc002kqz.1	-	5	611	c.498C>T	c.(496-498)TCC>TCT	p.S166S		NM_006796	NP_006787	Q9Y4W6	AFG32_HUMAN	AFG3 ATPase family gene 3-like 2	166					cell death|protein catabolic process|proteolysis	integral to membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0					Adenosine triphosphate(DB00171)	TTTCTCTCCCGGATCTCTTGA	0.438000													36	102					0	0	0.036044	0	0
C18orf34	374864	broad.mit.edu	37	18	30791879	30791879	+	Missense_Mutation	SNP	T	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr18:30791879T>G	uc002kxn.2	-	19	2361	c.2219A>C	c.(2218-2220)AAA>ACA	p.K740T	C18orf34_uc010dme.1_Missense_Mutation_p.K254T|C18orf34_uc010xbr.1_Missense_Mutation_p.K740T|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Missense_Mutation_p.K702T|C18orf34_uc002kxp.2_Missense_Mutation_p.K740T	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	740										ovary(1)	1						TTGAAGAGTTTTTTGTCTTAC	0.323000													13	1					0	0	0.033300	0	0
ELAC1	55520	broad.mit.edu	37	18	48500908	48500908	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr18:48500908T>C	uc002lez.2	+	2	240	c.134T>C	c.(133-135)CTT>CCT	p.L45P	ELAC1_uc010dpe.2_Missense_Mutation_p.L45P|SMAD4_uc010xdo.1_RNA	NM_018696	NP_061166	Q9H777	RNZ1_HUMAN	elaC homolog 1	45					tRNA 3'-trailer cleavage	nucleus	endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding				0		Colorectal(6;0.0269)|all_epithelial(6;0.0729)		Colorectal(21;0.000943)|COAD - Colon adenocarcinoma(17;0.0398)|READ - Rectum adenocarcinoma(32;0.0894)|STAD - Stomach adenocarcinoma(97;0.18)		CAGACACAGCTTATGAAAAGC	0.483000													42	15					0	0	0.045515	0	0
APC2	10297	broad.mit.edu	37	19	1465272	1465272	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:1465272C>T	uc002lsr.1	+	15	2180	c.1972C>T	c.(1972-1974)CGT>TGT	p.R658C	APC2_uc002lss.1_Missense_Mutation_p.R240C|APC2_uc002lst.1_Missense_Mutation_p.R658C|APC2_uc002lsu.1_Missense_Mutation_p.R657C|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	658	ARM 6.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGCAGCGCCCGTGACCAGGA	0.657000													9	10					0	0	0.016723	0	0
TMEM146	257062	broad.mit.edu	37	19	5751795	5751795	+	Silent	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:5751795G>A	uc002mda.2	+	12	1186	c.1125G>A	c.(1123-1125)GCG>GCA	p.A375A	TMEM146_uc010duj.1_Silent_p.A33A	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	375	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATATCCAGGCGCTTCTCATGG	0.448000													15	22					0	0	0.038395	0	0
JUND	3727	broad.mit.edu	37	19	18391463	18391463	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:18391463T>C	uc002nip.2	-	1	970	c.832A>G	c.(832-834)AAC>GAC	p.N278D	hsa-mir-3188|MI0014232_5'Flank	NM_005354	NP_005345	P17535	JUND_HUMAN	jun D proto-oncogene	278	Basic motif.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0						GCGATGCGGTTGCGCAGCCGC	0.662000													8	23					0	0	0.008291	0	0
LSM14A	26065	broad.mit.edu	37	19	34687642	34687642	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:34687642G>A	uc002nvb.3	+	3	585	c.389G>A	c.(388-390)GGG>GAG	p.G130E	LSM14A_uc002nva.3_Missense_Mutation_p.G130E|LSM14A_uc010xru.1_Missense_Mutation_p.G130E	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	130					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					TCCTTAGTTGGGCAGCAGTTT	0.368000													31	259					0	0	0.023175	0	0
RYR1	6261	broad.mit.edu	37	19	38974129	38974129	+	Missense_Mutation	SNP	T	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:38974129T>C	uc002oit.2	+	33	5037	c.4907T>C	c.(4906-4908)ATG>ACG	p.M1636T	RYR1_uc002oiu.2_Missense_Mutation_p.M1636T	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1636	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CTGACCATGATGGCGCTGCAC	0.687000													3	4					0	0	0.004672	0	0
FBXO27	126433	broad.mit.edu	37	19	39517561	39517561	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:39517561G>C	uc002okh.2	-	5	739	c.657C>G	c.(655-657)TTC>TTG	p.F219L		NM_178820	NP_849142	Q8NI29	FBX27_HUMAN	F-box protein 27	219	FBA.				protein catabolic process	SCF ubiquitin ligase complex	glycoprotein binding			ovary(1)	1	all_cancers(60;3.79e-07)|all_lung(34;1.26e-07)|Lung NSC(34;1.46e-07)|all_epithelial(25;4.69e-07)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			GCACAGCAGAGAATTTATCTA	0.542000													82	307					0	0	0.014410	0	0
NLRP8	126205	broad.mit.edu	37	19	56473470	56473470	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:56473470G>C	uc002qmh.2	+	4	2151	c.2080G>C	c.(2080-2082)GAC>CAC	p.D694H	NLRP8_uc010etg.2_Missense_Mutation_p.D694H	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	694						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTGGTGGCAAGACTTATGCTC	0.483000													21	142					0	0	0.024334	0	0
ZFP28	140612	broad.mit.edu	37	19	57065333	57065333	+	Silent	SNP	T	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:57065333T>C	uc002qnj.2	+	8	1250	c.1179T>C	c.(1177-1179)CAT>CAC	p.H393H	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	393					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		AGAAAGTTCATAATCGTGATT	0.318000													12	28					0	0	0.016723	0	0
ZNF513	130557	broad.mit.edu	37	2	27600878	27600878	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr2:27600878G>T	uc002rkk.2	-	4	1360	c.1160C>A	c.(1159-1161)CCC>CAC	p.P387H	ZNF513_uc002rkj.2_Missense_Mutation_p.P325H	NM_144631	NP_653232	Q8N8E2	ZN513_HUMAN	zinc finger protein 513	387					regulation of transcription, DNA-dependent|response to stimulus|retina development in camera-type eye|transcription, DNA-dependent|visual perception	nucleus	transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCAGCGGAAGGGCTTCTCACC	0.597000													42	234					9.45407e-15	1.06661e-14	0.014410	1	0
DYSF	8291	broad.mit.edu	37	2	71839934	71839934	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr2:71839934C>G	uc002sie.2	+	39	4707	c.4331C>G	c.(4330-4332)CCA>CGA	p.P1444R	DYSF_uc010feg.2_Missense_Mutation_p.P1475R|DYSF_uc010feh.2_Missense_Mutation_p.P1430R|DYSF_uc002sig.3_Missense_Mutation_p.P1430R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1444R|DYSF_uc010fef.2_Missense_Mutation_p.P1461R|DYSF_uc010fei.2_Missense_Mutation_p.P1461R|DYSF_uc010fek.2_Missense_Mutation_p.P1462R|DYSF_uc010fej.2_Missense_Mutation_p.P1431R|DYSF_uc010fel.2_Missense_Mutation_p.P1431R|DYSF_uc010feo.2_Missense_Mutation_p.P1476R|DYSF_uc010fem.2_Missense_Mutation_p.P1445R|DYSF_uc010fen.2_Missense_Mutation_p.P1462R|DYSF_uc002sif.2_Missense_Mutation_p.P1445R|DYSF_uc010yqy.1_Missense_Mutation_p.P325R|DYSF_uc010yqz.1_Missense_Mutation_p.P184R	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1444	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CAGGGTGGCCCAGGTAGGGGA	0.622000													8	34					0	0	0.008291	0	0
DDX11L2	84771	broad.mit.edu	37	2	114357557	114357557	+	Nonstop_Mutation	SNP	A	G	G	rs115341812	by1000genomes	TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr2:114357557A>G	uc010yxx.1	-	3	709	c.382T>C	c.(382-384)TAG>CAG	p.*128Q						SubName: Full=DEAD/H box polypeptide 11 like 2;												0						GCCTACTTCTAGTGAAACTGG	0.567000													3	32					0	0	0.009096	0	0
CCDC93	54520	broad.mit.edu	37	2	118703131	118703131	+	Missense_Mutation	SNP	T	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr2:118703131T>A	uc002tlj.2	-	17	1450	c.1324A>T	c.(1324-1326)ACC>TCC	p.T442S	CCDC93_uc010fld.1_Missense_Mutation_p.T442S	NM_019044	NP_061917	Q567U6	CCD93_HUMAN	coiled-coil domain containing 93	442										large_intestine(1)|ovary(1)	2						GAGGTCAAGGTACCAGGCGGC	0.517000													13	69					0	0	0.033300	0	0
METTL8	79828	broad.mit.edu	37	2	172195998	172195998	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr2:172195998A>G	uc010zdo.1	-	4	443	c.302T>C	c.(301-303)TTC>TCC	p.F101S	METTL8_uc002ugu.3_Missense_Mutation_p.F101S|METTL8_uc002ugv.3_Missense_Mutation_p.F101S|METTL8_uc002ugt.3_Missense_Mutation_p.F101S|METTL8_uc002ugs.3_Missense_Mutation_p.F51S|METTL8_uc010zdp.1_Missense_Mutation_p.F56S	NM_024770	NP_079046	B3KW44	B3KW44_HUMAN	methyltransferase like 8	101							methyltransferase activity			ovary(1)	1						ACGATCCTTGAAAAACTTATT	0.323000													16	58					0	0	0.024245	0	0
TTN	7273	broad.mit.edu	37	2	179440352	179440352	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr2:179440352A>C	uc010zfg.1	-	275	63027	c.62803T>G	c.(62803-62805)TGT>GGT	p.C20935G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.C14630G|TTN_uc010zfi.1_Missense_Mutation_p.C14563G|TTN_uc010zfj.1_Missense_Mutation_p.C14438G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21862							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAATATTCACACCCTTCAGAC	0.438000													8	50					0	0	0.027356	0	0
INO80D	54891	broad.mit.edu	37	2	206869685	206869685	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr2:206869685C>A	uc002vaz.3	-	11	2896	c.2491G>T	c.(2491-2493)GAT>TAT	p.D831Y		NM_017759	NP_060229	Q53TQ3	IN80D_HUMAN	INO80 complex subunit D	831					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						TGCTCACTATCATAATGGCTT	0.502000													45	246					1.19451e-25	1.40782e-25	0.014410	1	0
ZNF831	128611	broad.mit.edu	37	20	57769799	57769799	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr20:57769799C>T	uc002yan.2	+	1	3725	c.3725C>T	c.(3724-3726)GCG>GTG	p.A1242V		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1242						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGAGGGCCGGCGCAGATGTCC	0.592000													10	42					0	0	0.008291	0	0
COL20A1	57642	broad.mit.edu	37	20	61938923	61938923	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr20:61938923G>T	uc011aau.1	+	6	678	c.578G>T	c.(577-579)AGT>ATT	p.S193I	COL20A1_uc011aav.1_Missense_Mutation_p.S14I	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	193	VWFA.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					ATTGGCCACAGTCACTTCCAG	0.667000													22	83					4.16121e-05	4.42968e-05	0.016522	1	0
PRPF6	24148	broad.mit.edu	37	20	62631000	62631000	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr20:62631000C>T	uc002yho.2	+	8	1079	c.911C>T	c.(910-912)ACG>ATG	p.T304M	PRPF6_uc002yhp.2_Missense_Mutation_p.T304M	NM_012469	NP_036601	O94906	PRP6_HUMAN	PRP6 pre-mRNA processing factor 6 homolog	304					assembly of spliceosomal tri-snRNP|positive regulation of transcription from RNA polymerase II promoter|spliceosome assembly	catalytic step 2 spliceosome|nucleoplasm|U4/U6 snRNP|U4/U6 x U5 tri-snRNP complex|U5 snRNP	androgen receptor binding|ribonucleoprotein binding|transcription coactivator activity			ovary(2)	2	all_cancers(38;6.47e-12)|all_epithelial(29;1.26e-13)|Lung NSC(23;9.37e-10)|all_lung(23;3.23e-09)					GTTCGGGAGACGAACCCTCAT	0.577000													51	101					0	0	0.014410	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28337870	28337870	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr21:28337870G>A	uc002ymg.2	-	1	1570	c.841C>T	c.(841-843)CGG>TGG	p.R281W		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	281	Peptidase M12B.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						CCATACAACCGCGCCATGGAC	0.682000													12	17					0	0	0.013537	0	0
SF3A1	10291	broad.mit.edu	37	22	30741037	30741037	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr22:30741037C>T	uc003ahl.2	-	4	668	c.536G>A	c.(535-537)CGC>CAC	p.R179H		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	179	SURP motif 2.				nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						CAGAAACTGGCGCCCATTCCT	0.532000													58	88					0	0	0.014410	0	0
DHX30	22907	broad.mit.edu	37	3	47887313	47887313	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr3:47887313C>G	uc003cru.2	+	10	1489	c.1063C>G	c.(1063-1065)CTC>GTC	p.L355V	DHX30_uc003crt.2_Missense_Mutation_p.L316V|DHX30_uc010hjr.1_Missense_Mutation_p.L383V	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	355						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		CGAGCCCATCCTCCGCAAGAT	0.592000													14	63					0	0	0.043863	0	0
GATA2	2624	broad.mit.edu	37	3	128204702	128204702	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr3:128204702G>C	uc003ekm.3	-	4	1174	c.739C>G	c.(739-741)CCC>GCC	p.P247A	GATA2_uc003ekn.3_Missense_Mutation_p.P247A|GATA2_uc003eko.2_Missense_Mutation_p.P247A	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	247					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GGGTAGGTGGGGATGGGGTGG	0.657000			Mis		AML(CML blast transformation)								9	68					0	0	0.010729	0	0
EVC2	132884	broad.mit.edu	37	4	5564656	5564656	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr4:5564656C>G	uc003gij.2	-	22	3900	c.3846G>C	c.(3844-3846)GAG>GAC	p.E1282D	EVC2_uc011bwb.1_Missense_Mutation_p.E722D|EVC2_uc003gik.2_Missense_Mutation_p.E1202D	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1282						integral to membrane				large_intestine(3)|ovary(2)	5						GCAGTGAGATCTCTGGCTCCT	0.483000													26	167					0	0	0.030593	0	0
C4orf19	55286	broad.mit.edu	37	4	37591786	37591786	+	Missense_Mutation	SNP	G	A	A	rs111504567		TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr4:37591786G>A	uc003gsw.3	+	4	292	c.109G>A	c.(109-111)GAC>AAC	p.D37N	C4orf19_uc003gsy.3_Missense_Mutation_p.D37N	NM_001104629	NP_001098099	Q8IY42	CD019_HUMAN	hypothetical protein LOC55286	37											0						AGATGAAGACGACACTGATAA	0.458000													64	250					0	0	0.014410	0	0
MUC7	4589	broad.mit.edu	37	4	71347185	71347185	+	Missense_Mutation	SNP	T	C	C	rs79807294	by1000genomes	TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr4:71347185T>C	uc011cat.1	+	4	1012	c.724T>C	c.(724-726)TCT>CCT	p.S242P	MUC7_uc011cau.1_Missense_Mutation_p.S242P|MUC7_uc003hfj.2_Missense_Mutation_p.S242P|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	242	Thr-rich.|4.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCCACACCTTCTGCAACTAC	0.592000													5	262					0	0	0.029380	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480823	140480823	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr5:140480823A>G	uc003lio.2	+	1	590	c.590A>G	c.(589-591)GAT>GGT	p.D197G	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	197	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTAGTACTGGATAAAGCGCTC	0.567000													3	94					0	0	0.009096	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482367	140482367	+	Silent	SNP	C	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr5:140482367C>A	uc003lio.2	+	1	2134	c.2134C>A	c.(2134-2136)CGG>AGG	p.R712R	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	712	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGTGGCGGTGCGGCTGTGCAG	0.687000													85	179					9.53958e-58	1.13444e-57	0.014410	1	0
GLRA1	2741	broad.mit.edu	37	5	151266281	151266281	+	Splice_Site	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr5:151266281C>G	uc003lut.2	-	3	539	c.252_splice	c.e3+1	p.M84_splice	GLRA1_uc003lur.2_Splice_Site_p.M84_splice|GLRA1_uc003lus.2_Splice_Site_p.M1_splice	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor						muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	GACTTACTCACCATGGTTGTC	0.468000													30	54					0	0	0.015359	0	0
MAS1L	116511	broad.mit.edu	37	6	29455429	29455429	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr6:29455429A>G	uc011dlq.1	-	1	251	c.251T>C	c.(250-252)CTG>CCG	p.L84P		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	84	Helical; Name=1; (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						GAGGGAGACCAGCACAGCCTT	0.517000													10	136					0	0	0.006214	0	0
TCF19	6941	broad.mit.edu	37	6	31129289	31129289	+	Silent	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr6:31129289C>T	uc003nss.2	+	3	828	c.304C>T	c.(304-306)CTG>TTG	p.L102L	TCF19_uc003nst.2_Silent_p.L102L	NM_001077511	NP_001070979	Q9Y242	TCF19_HUMAN	transcription factor 19	102					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TGGAGACCTCCTGACCTTTGG	0.532000													61	169					0	0	0.014410	0	0
COL11A2	1302	broad.mit.edu	37	6	33139881	33139881	+	Splice_Site	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr6:33139881C>T	uc003ocx.1	-	41	3217	c.2989_splice	c.e41-1	p.G997_splice	COL11A2_uc010jul.1_Intron|COL11A2_uc003ocy.1_Splice_Site_p.G911_splice|COL11A2_uc003ocz.1_Splice_Site_p.G890_splice	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1						cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CAGGTCCACCCTATGAACCAG	0.567000													31	384					0	0	0.033182	0	0
MAD2L1BP	9587	broad.mit.edu	37	6	43608100	43608100	+	Missense_Mutation	SNP	C	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr6:43608100C>A	uc003ovv.2	+	3	691	c.655C>A	c.(655-657)CGC>AGC	p.R219S	MAD2L1BP_uc003ovu.2_Missense_Mutation_p.R251S	NM_014628	NP_055443	Q15013	MD2BP_HUMAN	MAD2L1 binding protein isoform 2	219					mitotic cell cycle checkpoint|regulation of exit from mitosis	cytoplasm|nucleus|spindle	protein binding				0	all_cancers(18;9.36e-06)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000351)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			ACAGGGACACCGCAACTGTGG	0.557000													8	108					0.000673444	0.000699958	0.008291	1	0
C6orf138	442213	broad.mit.edu	37	6	47846459	47846459	+	Silent	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr6:47846459G>A	uc011dwm.1	-	3	2155	c.2070C>T	c.(2068-2070)AAC>AAT	p.N690N	C6orf138_uc011dwn.1_Silent_p.N454N	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	707						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						CCATGTCGACGTTCCATAATG	0.438000													3	14					0	0	0.009096	0	0
THSD7A	221981	broad.mit.edu	37	7	11446636	11446636	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:11446636A>C	uc003ssf.3	-	20	4215	c.3963T>G	c.(3961-3963)GAT>GAG	p.D1321E		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1321	Extracellular (Potential).|TSP type-1 13.					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ATGGTCTTCCATCACCTTGAA	0.483000										HNSCC(18;0.044)			3	32					0	0	0.004672	0	0
KBTBD2	25948	broad.mit.edu	37	7	32909536	32909536	+	Silent	SNP	A	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:32909536A>G	uc003tdb.2	-	4	1952	c.1293T>C	c.(1291-1293)ATT>ATC	p.I431I	AVL9_uc011kai.1_Intron	NM_015483	NP_056298	Q8IY47	KBTB2_HUMAN	kelch repeat and BTB (POZ) domain containing 2	431	Kelch 3.										0			GBM - Glioblastoma multiforme(11;0.0499)			TCATCACATAAATGCAGTCAT	0.458000													20	102					0	0	0.012319	0	0
DBNL	28988	broad.mit.edu	37	7	44096357	44096357	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:44096357G>T	uc003tjp.3	+	5	427	c.329G>T	c.(328-330)GGG>GTG	p.G110V	DBNL_uc003tjn.2_5'UTR|DBNL_uc003tjo.3_Missense_Mutation_p.G110V|DBNL_uc003tjr.3_5'UTR|DBNL_uc003tjq.3_Missense_Mutation_p.G110V|DBNL_uc011kbm.1_Missense_Mutation_p.G85V|DBNL_uc011kbn.1_Missense_Mutation_p.G7V|DBNL_uc011kbo.1_Missense_Mutation_p.G10V|DBNL_uc011kbp.1_Intron|DBNL_uc011kbq.1_Missense_Mutation_p.G35V|DBNL_uc011kbr.1_Missense_Mutation_p.G58V|DBNL_uc011kbs.1_Missense_Mutation_p.G7V	NM_001014436	NP_001014436	Q9UJU6	DBNL_HUMAN	drebrin-like isoform b	110	ADF-H.				activation of JUN kinase activity|cellular component disassembly involved in apoptosis|endocytosis|Rac protein signal transduction	cell cortex|cytoskeleton|cytosol|lamellipodium	actin binding|enzyme activator activity|identical protein binding			skin(1)	1						CTGCTGCAGGGGGCCCATGTG	0.577000													8	57					1.08611e-07	1.18484e-07	0.010729	1	0
PCLO	27445	broad.mit.edu	37	7	82545739	82545739	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:82545739G>A	uc003uhx.2	-	7	11852	c.11563C>T	c.(11563-11565)CGA>TGA	p.R3855*	PCLO_uc003uhv.2_Nonsense_Mutation_p.R3855*|PCLO_uc010lec.2_Nonsense_Mutation_p.R820*	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3786					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTTCTTGGTCGCTCAATGCCA	0.468000													5	187					0	0	0.029380	0	0
NRCAM	4897	broad.mit.edu	37	7	107807411	107807411	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:107807411C>T	uc003vfb.2	-	30	3892	c.3421G>A	c.(3421-3423)GAC>AAC	p.D1141N	NRCAM_uc003vfc.2_Intron|NRCAM_uc011kmk.1_Intron|NRCAM_uc003vfd.2_Intron|NRCAM_uc003vfe.2_Intron|NRCAM_uc011kmj.1_Intron	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	1141	Fibronectin type-III 5.|Extracellular (Potential).			DSG -> GPR (in Ref. 8; CAA04507).	angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						AAACCAGAGTCCCCCACAGCA	0.517000													3	43					0	0	0.014758	0	0
EXOC4	60412	broad.mit.edu	37	7	133502234	133502234	+	Silent	SNP	T	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:133502234T>C	uc003vrk.2	+	11	1706	c.1671T>C	c.(1669-1671)CCT>CCC	p.P557P	EXOC4_uc011kpo.1_Silent_p.P456P|EXOC4_uc003vrl.2_Silent_p.P167P|EXOC4_uc011kpp.1_Silent_p.P89P	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	557					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				CATCTGACCCTTTGAAGATTC	0.428000													9	44					0	0	0.013537	0	0
ZNF775	285971	broad.mit.edu	37	7	150094916	150094916	+	Silent	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:150094916C>T	uc003whf.1	+	3	1472	c.1347C>T	c.(1345-1347)AAC>AAT	p.N449N	LOC728743_uc003whg.2_5'Flank	NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	449	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCATCTGCAACGAGTGCGGCA	0.736000													3	15					0	0	0.004672	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217476	150217476	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:150217476G>T	uc003whk.2	+	2	544	c.414G>T	c.(412-414)GAG>GAT	p.E138D		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	138							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGAGTTGGAGGGCCAGAGCT	0.512000													16	53					5.35267e-07	5.79141e-07	0.043863	1	0
ACCN3	9311	broad.mit.edu	37	7	150748969	150748969	+	Silent	SNP	T	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr7:150748969T>C	uc003win.2	+	7	1655	c.1287T>C	c.(1285-1287)TAT>TAC	p.Y429Y	ACCN3_uc003wio.2_Silent_p.Y429Y|ACCN3_uc003wip.2_Silent_p.Y429Y|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	429	Extracellular (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGAAGGCCTATGAGATGTCAG	0.587000													5	138					0	0	0.014758	0	0
CLN8	2055	broad.mit.edu	37	8	1719225	1719225	+	Missense_Mutation	SNP	A	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:1719225A>G	uc003wpo.3	+	2	310	c.5A>G	c.(4-6)AAT>AGT	p.N2S		NM_018941	NP_061764	Q9UBY8	CLN8_HUMAN	ceroid-lipofuscinosis, neuronal 8	2					cell death|ceramide biosynthetic process|cholesterol metabolic process|lipid transport|negative regulation of proteolysis|phospholipid metabolic process	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3		Ovarian(12;0.0563)|Colorectal(14;0.0815)|Hepatocellular(245;0.0831)		BRCA - Breast invasive adenocarcinoma(11;7.67e-05)|READ - Rectum adenocarcinoma(644;0.0913)		TGGACAATGAATCCTGCGAGC	0.557000													33	61					0	0	0.025465	0	0
ADAM28	10863	broad.mit.edu	37	8	24208786	24208786	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:24208786G>A	uc003xdy.2	+	20	2224	c.2141G>A	c.(2140-2142)AGG>AAG	p.R714K	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.R401K	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	714	Cytoplasmic (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AAACAGAAGAGGAAACCCCAG	0.478000													26	68					0	0	0.012213	0	0
MYST3	7994	broad.mit.edu	37	8	41801438	41801438	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:41801438G>C	uc010lxb.2	-	14	2600	c.2056C>G	c.(2056-2058)CTG>GTG	p.L686V	MYST3_uc010lxc.2_Missense_Mutation_p.L686V|MYST3_uc003xon.3_Missense_Mutation_p.L686V|MYST3_uc010lxd.2_Missense_Mutation_p.L686V	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	686	Mediates interaction with BRPF1, required for histone H3 acetyltransferase activity.|Catalytic.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			AGACGACCCAGATCAGATAAC	0.393000													16	59					0	0	0.012319	0	0
RP1	6101	broad.mit.edu	37	8	55537498	55537498	+	Silent	SNP	T	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:55537498T>C	uc003xsd.1	+	4	1204	c.1056T>C	c.(1054-1056)ACT>ACC	p.T352T	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	352					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGACAACTACTGTCAGTAAAA	0.348000													14	175					0	0	0.038395	0	0
CHD7	55636	broad.mit.edu	37	8	61768563	61768563	+	Silent	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:61768563C>T	uc003xue.2	+	33	7443	c.6966C>T	c.(6964-6966)AAC>AAT	p.N2322N		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2322					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GCTTAGACAACATCTGTGAAG	0.418000													6	42					0	0	0.038147	0	0
EYA1	2138	broad.mit.edu	37	8	72211296	72211296	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:72211296G>C	uc003xys.3	-	8	1099	c.812C>G	c.(811-813)ACA>AGA	p.T271R	EYA1_uc003xyr.3_Missense_Mutation_p.T266R|EYA1_uc003xyt.3_Missense_Mutation_p.T238R|EYA1_uc010lzf.2_Missense_Mutation_p.T198R|EYA1_uc003xyu.2_Missense_Mutation_p.T271R|EYA1_uc011lfe.1_Missense_Mutation_p.T265R|EYA1_uc003xyv.2_Missense_Mutation_p.T149R	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	271					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			TGTGGGATCTGTAACTGCTTG	0.438000													17	266					0	0	0.018920	0	0
EYA1	2138	broad.mit.edu	37	8	72211333	72211333	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:72211333G>C	uc003xys.3	-	8	1062	c.775C>G	c.(775-777)CAA>GAA	p.Q259E	EYA1_uc003xyr.3_Missense_Mutation_p.Q254E|EYA1_uc003xyt.3_Missense_Mutation_p.Q226E|EYA1_uc010lzf.2_Missense_Mutation_p.Q186E|EYA1_uc003xyu.2_Missense_Mutation_p.Q259E|EYA1_uc011lfe.1_Missense_Mutation_p.Q253E|EYA1_uc003xyv.2_Missense_Mutation_p.Q137E	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	259					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GGCGGTTCTTGAAGCTGGTAA	0.458000													11	324					0	0	0.030593	0	0
EYA1	2138	broad.mit.edu	37	8	72211356	72211356	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:72211356G>A	uc003xys.3	-	8	1039	c.752C>T	c.(751-753)TCC>TTC	p.S251F	EYA1_uc003xyr.3_Missense_Mutation_p.S246F|EYA1_uc003xyt.3_Missense_Mutation_p.S218F|EYA1_uc010lzf.2_Missense_Mutation_p.S178F|EYA1_uc003xyu.2_Missense_Mutation_p.S251F|EYA1_uc011lfe.1_Missense_Mutation_p.S245F|EYA1_uc003xyv.2_Missense_Mutation_p.S129F	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	251					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GGCATTGGTGGATGGTGTCGT	0.478000													11	338					0	0	0.018920	0	0
EYA1	2138	broad.mit.edu	37	8	72211369	72211369	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:72211369G>T	uc003xys.3	-	8	1026	c.739C>A	c.(739-741)CCA>ACA	p.P247T	EYA1_uc003xyr.3_Missense_Mutation_p.P242T|EYA1_uc003xyt.3_Missense_Mutation_p.P214T|EYA1_uc010lzf.2_Missense_Mutation_p.P174T|EYA1_uc003xyu.2_Missense_Mutation_p.P247T|EYA1_uc011lfe.1_Missense_Mutation_p.P241T|EYA1_uc003xyv.2_Missense_Mutation_p.P125T	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	247					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			GGTGTCGTTGGGCTGGTGTTG	0.498000													18	338					1.80694e-10	1.98764e-10	0.041601	1	0
EYA1	2138	broad.mit.edu	37	8	72211435	72211435	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:72211435G>C	uc003xys.3	-	8	960	c.673C>G	c.(673-675)CAG>GAG	p.Q225E	EYA1_uc003xyr.3_Missense_Mutation_p.Q220E|EYA1_uc003xyt.3_Missense_Mutation_p.Q192E|EYA1_uc010lzf.2_Missense_Mutation_p.Q152E|EYA1_uc003xyu.2_Missense_Mutation_p.Q225E|EYA1_uc011lfe.1_Missense_Mutation_p.Q219E|EYA1_uc003xyv.2_Missense_Mutation_p.Q103E	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	225					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			TGTGCGTACTGACCCTGGCCA	0.448000													31	303					0	0	0.021022	0	0
ZFHX4	79776	broad.mit.edu	37	8	77619890	77619890	+	Silent	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:77619890G>A	uc003yav.2	+	3	3009	c.2622G>A	c.(2620-2622)GCG>GCA	p.A874A	ZFHX4_uc003yat.1_Silent_p.A874A|ZFHX4_uc003yau.1_Silent_p.A900A|ZFHX4_uc003yaw.1_Silent_p.A874A	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	874						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GTGACCCAGCGCTGAAGCTAT	0.547000										HNSCC(33;0.089)			24	142					0	0	0.045705	0	0
LRRCC1	85444	broad.mit.edu	37	8	86025203	86025203	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:86025203G>A	uc003ycw.2	+	4	567	c.413G>A	c.(412-414)AGA>AAA	p.R138K	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_5'UTR|LRRCC1_uc003ycx.2_Missense_Mutation_p.R45K|LRRCC1_uc003ycy.2_Missense_Mutation_p.R118K	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	138	LRR 5.				cell division|mitosis	centriole|nucleus					0						CATAAACTTAGATATATTGAT	0.328000													35	172					0	0	0.019004	0	0
LRRCC1	85444	broad.mit.edu	37	8	86025211	86025211	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:86025211G>T	uc003ycw.2	+	4	575	c.421G>T	c.(421-423)GAT>TAT	p.D141Y	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_5'UTR|LRRCC1_uc003ycx.2_Missense_Mutation_p.D48Y|LRRCC1_uc003ycy.2_Missense_Mutation_p.D121Y	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	141	LRR 5.				cell division|mitosis	centriole|nucleus					0						TAGATATATTGATCTACATAG	0.348000													40	177					6.1244e-12	6.85103e-12	0.030466	1	0
LRRCC1	85444	broad.mit.edu	37	8	86037142	86037142	+	Missense_Mutation	SNP	G	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:86037142G>C	uc003ycw.2	+	8	1394	c.1240G>C	c.(1240-1242)GAC>CAC	p.D414H	LRRCC1_uc010lzz.1_RNA|LRRCC1_uc010maa.1_Missense_Mutation_p.D115H|LRRCC1_uc003ycx.2_Missense_Mutation_p.D321H|LRRCC1_uc003ycy.2_Missense_Mutation_p.D394H	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	414					cell division|mitosis	centriole|nucleus					0						AATTAAAGTAGACCAAAGTCA	0.303000													6	151					0	0	0.029380	0	0
TRPS1	7227	broad.mit.edu	37	8	116426706	116426706	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:116426706C>T	uc003ynz.2	-	6	3850	c.3391G>A	c.(3391-3393)GTG>ATG	p.V1131M	TRPS1_uc011lhy.1_Missense_Mutation_p.V1135M|TRPS1_uc003yny.2_Missense_Mutation_p.V1144M|TRPS1_uc010mcy.2_Missense_Mutation_p.V1131M	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	1131	Mediates interaction with RNF4 (By similarity).				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			AGGCCAGGCACGTGACTCAAG	0.468000									Langer-Giedion_syndrome				4	15					0	0	0.014758	0	0
TRPS1	7227	broad.mit.edu	37	8	116616407	116616407	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:116616407G>A	uc003ynz.2	-	3	2209	c.1750C>T	c.(1750-1752)CCG>TCG	p.P584S	TRPS1_uc011lhy.1_Missense_Mutation_p.P588S|TRPS1_uc003yny.2_Missense_Mutation_p.P597S|TRPS1_uc010mcy.2_Missense_Mutation_p.P584S	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	584					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CAAGCAAACGGATAAGTAATT	0.468000									Langer-Giedion_syndrome				15	10					0	0	0.024245	0	0
ZNF251	90987	broad.mit.edu	37	8	145947382	145947382	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:145947382G>T	uc003zdv.3	-	5	1919	c.1663C>A	c.(1663-1665)CTG>ATG	p.L555M		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	555					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		GTCCAGCGCAGAATGAGATTT	0.488000													26	118					1.80694e-10	1.98764e-10	0.041601	1	0
FAM75A6	389730	broad.mit.edu	37	9	43625248	43625248	+	Silent	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr9:43625248G>A	uc011lrb.1	-	4	3468	c.3439C>T	c.(3439-3441)CTG>TTG	p.L1147L		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	1147						integral to membrane					0						TTTGATGGCAGTAGCTGGACG	0.428000													4	118					0	0	0.009096	0	0
TNC	3371	broad.mit.edu	37	9	117848905	117848905	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr9:117848905C>T	uc004bjj.3	-	3	1467	c.1105G>A	c.(1105-1107)GGT>AGT	p.G369S	TNC_uc010mvf.2_Missense_Mutation_p.G369S	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	369	EGF-like 7.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CAGTCCACACCGGCAAAGCCC	0.597000													17	101					0	0	0.038395	0	0
DHRSX	207063	broad.mit.edu	37	X	2343291	2343291	+	Missense_Mutation	SNP	A	C	C			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chrX:2343291A>C	uc004cqf.3	-	2	213	c.164T>G	c.(163-165)ATT>AGT	p.I55S		NM_145177	NP_660160	Q8N5I4	DHRSX_HUMAN	dehydrogenase/reductase (SDR family) X-linked	55	NAD or NADP (By similarity).						binding|oxidoreductase activity				0		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				AGAATAGCCAATGCCATCTGT	0.398000													29	221					0	0	0.021022	0	0
FRMPD4	9758	broad.mit.edu	37	X	12728628	12728628	+	Missense_Mutation	SNP	C	G	G			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chrX:12728628C>G	uc004cuz.1	+	14	2087	c.1581C>G	c.(1579-1581)AAC>AAG	p.N527K	FRMPD4_uc011mij.1_Missense_Mutation_p.N519K	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	527					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding	p.N527K(2)		central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						ACATGGCCAACAAGAAAAACA	0.483000													55	30					0	0	0.014410	0	0
DMD	1756	broad.mit.edu	37	X	32408205	32408205	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chrX:32408205G>A	uc004dda.1	-	31	4571	c.4327C>T	c.(4327-4329)CAG>TAG	p.Q1443*	DMD_uc004dcw.2_Nonsense_Mutation_p.Q99*|DMD_uc004dcx.2_Nonsense_Mutation_p.Q102*|DMD_uc004dcz.2_Nonsense_Mutation_p.Q1320*|DMD_uc004dcy.1_Nonsense_Mutation_p.Q1439*|DMD_uc004ddb.1_Nonsense_Mutation_p.Q1435*|DMD_uc010ngo.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	1443	Interaction with SYNM (By similarity).				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				ACATCAATCTGAGACAGGACT	0.388000													13	19					0	0	0.024245	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960214	73960214	+	Missense_Mutation	SNP	C	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chrX:73960214C>T	uc004eby.2	-	3	4795	c.4178G>A	c.(4177-4179)AGG>AAG	p.R1393K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1393					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTTGATTGACCTGTGATTCTT	0.443000													36	37					0	0	0.036044	0	0
CLDN2	9075	broad.mit.edu	37	X	106171619	106171619	+	Missense_Mutation	SNP	G	T	T			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chrX:106171619G>T	uc004emq.1	+	2	680	c.161G>T	c.(160-162)TGT>TTT	p.C54F	MORC4_uc004emp.3_Intron|CLDN2_uc004emt.1_Missense_Mutation_p.C54F	NM_020384	NP_065117	P57739	CLD2_HUMAN	claudin 2	54	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(1)	1						TGGATGGAATGTGCCACACAC	0.567000													67	19					8.70839e-23	1.01726e-22	0.014410	1	0
GPR119	139760	broad.mit.edu	37	X	129518563	129518563	+	Nonsense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chrX:129518563G>A	uc011muv.1	-	1	859	c.859C>T	c.(859-861)CGA>TGA	p.R287*		NM_178471	NP_848566	Q8TDV5	GP119_HUMAN	G protein-coupled receptor 119	287	Cytoplasmic (Potential).					integral to membrane|plasma membrane	lipid binding			ovary(2)	2						AGCTGCAGTCGCACCTCCTTC	0.582000													20	35					0	0	0.016522	0	0
PLXNA3	55558	broad.mit.edu	37	X	153689068	153689068	+	Missense_Mutation	SNP	G	A	A			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chrX:153689068G>A	uc004flm.2	+	2	718	c.545G>A	c.(544-546)AGC>AAC	p.S182N		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	182	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCCACCTTGAGCTCCCGCAAG	0.597000													14	96					0	0	0.033300	0	0
INPPL1	3636	broad.mit.edu	37	11	71948209	71948209	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr11:71948209delC	uc001osf.2	+	26	3068	c.2921delC	c.(2920-2922)GCCfs	p.A974fs	INPPL1_uc001osg.2_Frame_Shift_Del_p.A732fs	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	974	Pro-rich.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						GGGGTGGCGGCCCCCCCACCC	0.607													7	643	---	---	---	---					
TECPR2	9895	broad.mit.edu	37	14	102901462	102901462	+	Frame_Shift_Del	DEL	A	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr14:102901462delA	uc001ylw.1	+	9	2456	c.2308delA	c.(2308-2310)AGTfs	p.S770fs	TECPR2_uc010awl.2_Frame_Shift_Del_p.S770fs|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	770							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						CTCAGAGACGAGTGTGACAGA	0.607													30	138	---	---	---	---					
SGSM2	9905	broad.mit.edu	37	17	2281207	2281209	+	In_Frame_Del	DEL	CTA	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr17:2281207_2281209delCTA	uc002fun.3	+	21	2899_2901	c.2724_2726delCTA	c.(2722-2727)TTCTAC>TTC	p.Y909del	SGSM2_uc002fum.3_In_Frame_Del_p.Y954del|SGSM2_uc010vqw.1_In_Frame_Del_p.Y909del|SGSM2_uc002fup.1_In_Frame_Del_p.Y87del|SGSM2_uc002fuq.2_In_Frame_Del_p.Y71del	NM_001098509	NP_001091979	O43147	SGSM2_HUMAN	RUN and TBC1 domain containing 1 isoform 2	909	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0				Colorectal(2;5.15e-05)|READ - Rectum adenocarcinoma(2;0.000115)		ACACCCACTTCTACTTCTGTTAT	0.522													19	140	---	---	---	---					
YBX2	51087	broad.mit.edu	37	17	7193599	7193599	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr17:7193599delG	uc002gfq.2	-	5	772	c.715delC	c.(715-717)CGGfs	p.R239fs		NM_015982	NP_057066	Q9Y2T7	YBOX2_HUMAN	Y box binding protein 2	239	Pro-rich.|Required for mRNA-binding.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter|translational attenuation	cytoplasm|nucleus	DNA binding				0						TTGGGAGGCCGGGGGCCTCGC	0.622													7	394	---	---	---	---					
FCGBP	8857	broad.mit.edu	37	19	40433822	40433822	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:40433822delG	uc002omp.3	-	2	455	c.447delC	c.(445-447)CCCfs	p.P149fs		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	149	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			CTGAGGTGCCGGGGGGTGTGA	0.607													8	146	---	---	---	---					
SERTAD1	29950	broad.mit.edu	37	19	40929409	40929411	+	In_Frame_Del	DEL	CTC	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr19:40929409_40929411delCTC	uc002ont.3	-	2	202_204	c.43_45delGAG	c.(43-45)GAGdel	p.E15del		NM_013376	NP_037508	Q9UHV2	SRTD1_HUMAN	SERTA domain containing 1	15					positive regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GAGGTTCCTTCTCCTCCTCCTCC	0.453													11	208	---	---	---	---					
ANKS1A	23294	broad.mit.edu	37	6	34951143	34951143	+	Frame_Shift_Del	DEL	C	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr6:34951143delC	uc003ojx.3	+	7	1095	c.953delC	c.(952-954)ACCfs	p.T318fs	ANKS1A_uc011dss.1_Intron|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	318						cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						GTAGATAAAACCCCCCCACCC	0.418													7	799	---	---	---	---					
C6orf186	728464	broad.mit.edu	37	6	110679166	110679166	+	Frame_Shift_Del	DEL	G	-	-			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr6:110679166delG	uc010kdu.1	-	1	310	c.310delC	c.(310-312)CGCfs	p.R104fs	C6orf186_uc003pub.2_Intron	NM_001123364	NP_001116836	Q5JXM2	CF186_HUMAN	chromosome 6 open reading frame 186 precursor	104						extracellular region					0						ACCTTccggcgggggcgcccg	0.433													2	4	---	---	---	---					
DLC1	10395	broad.mit.edu	37	8	12946210	12946211	+	Frame_Shift_Ins	INS	-	CA	CA			TCGA-ER-A3EV-06A-11D-A20D-08	TCGA-ER-A3EV-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	8734b653-42a4-4c0c-815c-64811039c98b	ecda3330-2354-4073-8a1e-d3618a495e4d	g.chr8:12946210_12946211insCA	uc003wwm.2	-	16	4521_4522	c.4077_4078insTG	c.(4075-4080)GTGAGCfs	p.V1359fs	DLC1_uc003wwk.1_Frame_Shift_Ins_p.V922fs|DLC1_uc003wwl.1_Frame_Shift_Ins_p.V956fs|DLC1_uc011kxx.1_Frame_Shift_Ins_p.V848fs	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	1359_1360	START.				actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						GGTCCTTCGCTCACCTGGAAAG	0.436													33	60	---	---	---	---					
