Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
UBR4	23352	broad.mit.edu	37	1	19477268	19477268	+	Silent	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:19477268T>C	uc001bbi.2	-	49	7237	c.7233A>G	c.(7231-7233)CCA>CCG	p.P2411P	UBR4_uc001bbk.1_Silent_p.P65P	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	2411					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TGACACCTGCTGGATCCACCG	0.498000													75	107					0	0	0.00361006	0	0
NCDN	23154	broad.mit.edu	37	1	36028075	36028075	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:36028075C>T	uc001bza.2	+	5	1353	c.1226C>T	c.(1225-1227)TCC>TTC	p.S409F	NCDN_uc001bzb.2_Missense_Mutation_p.S409F|NCDN_uc001bzc.2_Missense_Mutation_p.S392F	NM_001014839	NP_001014839	Q9UBB6	NCDN_HUMAN	neurochondrin isoform 1	409					neuron projection development	cytosol|dendrite|neuronal cell body				large_intestine(2)|pancreas(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GAGACCTCATCCTTGCGTAAG	0.627000													45	30					0	0	0.00361006	0	0
ERI3	79033	broad.mit.edu	37	1	44804890	44804890	+	Silent	SNP	A	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:44804890A>G	uc001clt.2	-	3	557	c.316T>C	c.(316-318)TTA>CTA	p.L106L	ERI3_uc010okv.1_Intron|ERI3_uc009vxg.2_Silent_p.L106L|ERI3_uc010okw.1_Silent_p.L28L|ERI3_uc001clu.2_Silent_p.L28L	NM_024066	NP_076971	O43414	ERI3_HUMAN	prion protein interacting protein	106						intracellular	exonuclease activity|metal ion binding|nucleic acid binding			ovary(2)|large_intestine(1)	3						GGAGAAAATAAGTGGGAGCCC	0.512000													99	122					0	0	0.00361006	0	0
C1orf168	199920	broad.mit.edu	37	1	57257803	57257803	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:57257803G>A	uc001cym.3	-	2	1089	c.683C>T	c.(682-684)CCA>CTA	p.P228L	C1orf168_uc009vzu.1_RNA|C1orf168_uc009vzv.1_Missense_Mutation_p.P228L	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	228										ovary(3)|skin(2)	5						CTCAGGAGGTGGGTTTTCCCA	0.522000													52	60					0	0	0.00361006	0	0
SYCP1	6847	broad.mit.edu	37	1	115537573	115537573	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:115537573G>A	uc001efr.2	+	32	3073	c.2864G>A	c.(2863-2865)CGT>CAT	p.R955H	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.R955H|SYCP1_uc009wgw.2_Missense_Mutation_p.R930H	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	955					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CGGGAGGACCGTTGGGCTGTA	0.343000													45	62					0	0	0.00321405	0	0
NBPF9	400818	broad.mit.edu	37	1	144619399	144619399	+	Silent	SNP	G	A	A	rs4067645	by1000genomes	TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:144619399G>A	uc009wig.1	+	7	622	c.546G>A	c.(544-546)GTG>GTA	p.V182V	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Silent_p.V182V|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Silent_p.V113V|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Silent_p.V113V|NBPF9_uc010oyg.1_Silent_p.V147V|NBPF9_uc009wii.1_Intron	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	182	NBPF 1.					cytoplasm					0						ATGAGAAAGTGCAGAAATCAT	0.413000													8	366					0	0	0.00136819	0	0
FCGR1C	100132417	broad.mit.edu	37	1	149378172	149378172	+	RNA	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:149378172C>T	uc010pbh.1	+	6		c.1213C>T				NR_027484				Homo sapiens cDNA FLJ77773 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.												0						TCTGGACCGTCCCCTGTCCAC	0.542000													12	39					0	0	0.00185496	0	0
FLG	2312	broad.mit.edu	37	1	152279860	152279860	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:152279860G>A	uc001ezu.1	-	3	7538	c.7502C>T	c.(7501-7503)TCT>TTT	p.S2501F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2501	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAGGCATCAGACCTTCCCTG	0.552000									Ichthyosis				309	213					0	0	0.00361006	0	0
FLG2	388698	broad.mit.edu	37	1	152323828	152323828	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:152323828C>T	uc001ezw.3	-	3	6507	c.6434G>A	c.(6433-6435)GGA>GAA	p.G2145E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2145	Filaggrin 10.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGTATAGTTCCCTGTCTCCC	0.507000													295	205					0	0	0.00361006	0	0
FLG2	388698	broad.mit.edu	37	1	152324077	152324077	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:152324077C>T	uc001ezw.3	-	3	6258	c.6185G>A	c.(6184-6186)GGA>GAA	p.G2062E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2062							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACTGAGGATCCTGACTCTCC	0.532000													332	218					0	0	0.00361006	0	0
TRIM46	80128	broad.mit.edu	37	1	155150687	155150687	+	Silent	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:155150687A>T	uc001fhs.1	+	6	1202	c.1119A>T	c.(1117-1119)ACA>ACT	p.T373T	RAG1AP1_uc010pey.1_Intron|TRIM46_uc009wpe.1_RNA|TRIM46_uc001fhq.2_RNA|TRIM46_uc001fhr.2_Silent_p.T373T|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Silent_p.T247T|TRIM46_uc001fhu.1_Silent_p.T350T|TRIM46_uc009wpg.1_Silent_p.T360T|TRIM46_uc001fhv.3_Silent_p.T360T|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	373	Potential.|COS.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TTAAGGAAACAGACCAGCCTT	0.607000													16	49					0	0	0.000566183	0	0
BCAN	63827	broad.mit.edu	37	1	156627951	156627951	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:156627951C>A	uc001fpp.2	+	12	2661	c.2325C>A	c.(2323-2325)GAC>GAA	p.D775E		NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	775	C-type lectin.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GGCAGCCTGACAGCTACTTCC	0.587000											OREG0013880	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	54					9.39395e-14	2.53313e-13	0.00106085	1	0
INSRR	3645	broad.mit.edu	37	1	156814367	156814367	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:156814367C>T	uc010pht.1	-	14	2878	c.2624G>A	c.(2623-2625)GGA>GAA	p.G875E	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	875	Fibronectin type-III 3.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CAGGTGGACTCCCCCAAACTT	0.577000													12	30					0	0	0.000978159	0	0
PEAR1	375033	broad.mit.edu	37	1	156880530	156880530	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:156880530C>T	uc001fqj.1	+	15	2062	c.1946C>T	c.(1945-1947)TCC>TTC	p.S649F	PEAR1_uc001fqk.1_Missense_Mutation_p.S274F	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	649	EGF-like 8.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCGACTGCTCCCAGCGTATG	0.617000													28	68					0	0	0.00111076	0	0
ETV3L	440695	broad.mit.edu	37	1	157067746	157067746	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:157067746A>G	uc001fqq.1	-	4	806	c.521T>C	c.(520-522)ATG>ACG	p.M174T		NM_001004341	NP_001004341	Q6ZN32	ETV3L_HUMAN	ets variant 3-like	174						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	Hepatocellular(266;0.158)	Prostate(1639;0.184)				CTGCTCCACCATGGCCTGATG	0.592000													23	56					0	0	0.00229938	0	0
FCRL4	83417	broad.mit.edu	37	1	157556142	157556142	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:157556142C>T	uc001fqw.2	-	6	1087	c.951G>A	c.(949-951)GGG>GGA	p.G317G	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	317	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				ATGTGGTATCCCCTGTGCCTT	0.617000													74	61					0	0	0.00361006	0	0
RXRG	6258	broad.mit.edu	37	1	165370608	165370609	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:165370608_165370609GG>AA	uc001gda.2	-	10	1583_1584	c.1283_1284CC>TT	c.(1282-1284)TCC>TTT	p.S428F		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	428	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	TCAAGCCAATGGAACGCAGAGC	0.599000													35	104					0	0	6.4e-05	0	0
ZNF648	127665	broad.mit.edu	37	1	182026983	182026983	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:182026983G>A	uc001goz.2	-	2	371	c.163C>T	c.(163-165)CCA>TCA	p.P55S		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	55					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTGCCCCTTGGACAGGCCACC	0.562000													32	95					0	0	0.0024448	0	0
HMCN1	83872	broad.mit.edu	37	1	185958751	185958751	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:185958751C>T	uc001grq.1	+	21	3409	c.3180C>T	c.(3178-3180)GCC>GCT	p.A1060A	HMCN1_uc001grr.1_Silent_p.A401A	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1060	Ig-like C2-type 7.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CCGGCTACGCCAAAAGGAAAG	0.483000													51	23					0	0	0.00361006	0	0
KCNT2	343450	broad.mit.edu	37	1	196459048	196459048	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:196459048G>A	uc001gtd.1	-	3	255	c.195C>T	c.(193-195)TTC>TTT	p.F65F	KCNT2_uc001gte.1_Silent_p.F65F|KCNT2_uc001gtf.1_Silent_p.F65F|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.F65F|KCNT2_uc009wyv.1_Silent_p.F65F	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	65	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GAGAAAAATTGAACAGGCGTA	0.303000													117	76					0	0	0.00361006	0	0
CFHR2	3080	broad.mit.edu	37	1	196928190	196928190	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:196928190C>T	uc001gtq.1	+	5	870	c.793C>T	c.(793-795)CCC>TCC	p.P265S	CFHR2_uc001gtr.1_Missense_Mutation_p.P141S	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	265	Sushi 4.					extracellular region				skin(2)|ovary(1)	3						ACTGGTATATCCCAGTTGTGA	0.299000													65	47					0	0	0.00361006	0	0
PTPRC	5788	broad.mit.edu	37	1	198703491	198703491	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:198703491G>A	uc001gur.1	+	22	2388	c.2208G>A	c.(2206-2208)AGG>AGA	p.R736R	PTPRC_uc001gus.1_Silent_p.R688R|PTPRC_uc001gut.1_Silent_p.R575R|PTPRC_uc010ppg.1_Silent_p.R672R	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	736	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						ATTTCTGGAGGATGATTTGGG	0.378000													392	270					0	0	0.00361006	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200801331	200801331	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:200801331C>T	uc001gvl.2	+	6	952	c.682C>T	c.(682-684)CGT>TGT	p.R228C	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.R217C|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.R217C	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	228	CH.					cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						ATCGTAGGCTCGTTATCGGAA	0.343000													20	39					0	0	0.00229938	0	0
TNNT2	7139	broad.mit.edu	37	1	201330443	201330443	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:201330443G>A	uc001gwf.2	-	14	834	c.765C>T	c.(763-765)TTC>TTT	p.F255F	TNNT2_uc009wzn.2_RNA|TNNT2_uc009wzo.2_RNA|TNNT2_uc009wzp.2_RNA|TNNT2_uc001gwg.2_Silent_p.F245F|TNNT2_uc001gwh.2_Silent_p.F242F|TNNT2_uc001gwi.2_Silent_p.F215F|TNNT2_uc009wzr.2_Silent_p.F186F	NM_000364	NP_000355	P45379	TNNT2_HUMAN	troponin T type 2, cardiac isoform 1	258					ATP catabolic process|muscle filament sliding|negative regulation of ATPase activity|positive regulation of ATPase activity|regulation of heart contraction|response to calcium ion|response to calcium ion|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|tropomyosin binding|troponin C binding|troponin I binding				0						CCTGCAGGTCGAACTTCTCTG	0.577000											OREG0014076	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	147	266					0	0	0.00361006	0	0
NUCKS1	64710	broad.mit.edu	37	1	205696889	205696889	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:205696889G>A	uc001hdb.2	-	3	372	c.112C>T	c.(112-114)CGA>TGA	p.R38*		NM_022731	NP_073568	Q9H1E3	NUCKS_HUMAN	nuclear casein kinase and cyclin-dependent	38						nucleus					0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			GGAGATGATCGAATTTTCTTA	0.363000													65	50					0	0	0.00361006	0	0
SLC26A9	115019	broad.mit.edu	37	1	205886433	205886433	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:205886433C>T	uc001hdq.2	-	20	2420	c.2306G>A	c.(2305-2307)CGC>CAC	p.R769H	SLC26A9_uc001hdm.2_5'UTR|SLC26A9_uc001hdn.2_5'UTR|SLC26A9_uc001hdo.2_Missense_Mutation_p.R437H|SLC26A9_uc001hdp.2_Missense_Mutation_p.R769H	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	769						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CCAGTAGCTGCGAATGTCCTC	0.577000													86	259					0	0	0.00361006	0	0
CTSE	1510	broad.mit.edu	37	1	206331020	206331020	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:206331020G>A	uc001hdu.2	+	9	1145	c.1027_splice	c.e9-1	p.D343_splice	CTSE_uc001hdv.2_Splice_Site_p.W295_splice|CTSE_uc010prs.1_Splice_Site_p.W220_splice	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein						antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			CCAACCCACAGGACTTCGTGG	0.567000													77	237					0	0	0.00361006	0	0
CENPF	1063	broad.mit.edu	37	1	214819327	214819327	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:214819327C>T	uc001hkm.2	+	13	6588	c.6414C>T	c.(6412-6414)ATC>ATT	p.I2138I		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	2234	Potential.|2-1.|2 X 177 AA tandem repeats.|Interaction with NDE1 and NDEL1.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		AGCTGCACATCGCAGAGAAAC	0.478000													23	68					0	0	0.00229938	0	0
PRSS38	339501	broad.mit.edu	37	1	228005003	228005003	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:228005003G>A	uc001hrh.2	+	3	405	c.405G>A	c.(403-405)GTG>GTA	p.V135V		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	135	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						TGAACAGGGTGATCCTGCACC	0.557000													32	61					0	0	0.00178596	0	0
OR2L3	391192	broad.mit.edu	37	1	248224344	248224344	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr1:248224344C>T	uc001idx.1	+	1	361	c.361C>T	c.(361-363)CGT>TGT	p.R121C	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GGCCTATGATCGTTACATTGC	0.443000													101	193					0	0	0.00361006	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654496	38654496	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr10:38654496C>T	uc010qex.1	+	5	663	c.588C>T	c.(586-588)AGC>AGT	p.S196S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Silent_p.S194S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						AACCCTACAGCTCTTCCAAAT	0.488000													13	6					0	0	0.00244969	0	0
SYT15	83849	broad.mit.edu	37	10	46963872	46963872	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr10:46963872C>T	uc001jea.2	-	7	1244	c.1091G>A	c.(1090-1092)AGC>AAC	p.S364N	SYT15_uc001jdz.2_Missense_Mutation_p.S364N|SYT15_uc001jeb.2_Missense_Mutation_p.S242N|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	364	Cytoplasmic (Potential).|C2 2.					integral to membrane|plasma membrane					0						CACAGTCAGGCTGAGGCTAGC	0.592000													17	34					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	10	49218553	49218553	+	Missense_Mutation	SNP	T	C	C	rs77581903		TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr10:49218553T>C	uc001jgd.2	-	8	1745	c.1586A>G	c.(1585-1587)CAT>CGT	p.H529R	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		ATATTTGGAATGGATCCAGCG	0.567000													4	10					0	0	0.000442599	0	0
C10orf72	196740	broad.mit.edu	37	10	50255085	50255085	+	Silent	SNP	C	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr10:50255085C>A	uc001jhf.2	-	7	809	c.780G>T	c.(778-780)CCG>CCT	p.P260P		NM_001031746	NP_001026916	Q8IW00	CJ072_HUMAN	hypothetical protein LOC196740 isoform 1	260	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						TGGGGGCTATCGGAGCTGTGG	0.478000													109	45					5.70617e-39	1.56569e-38	0.00361006	1	0
RNLS	55328	broad.mit.edu	37	10	90034768	90034768	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr10:90034768G>A	uc001kfd.2	-	7	1033	c.898C>T	c.(898-900)CTA>TTA	p.L300L	RNLS_uc010qms.1_Silent_p.L217L	NM_018363	NP_060833	Q5VYX0	RNLS_HUMAN	renalase isoform 2	Error:Variant_position_missing_in_Q5VYX0_after_alignment						extracellular region	oxidoreductase activity			ovary(1)	1						GCACATCCTAGAATCACACCA	0.443000													29	7					0	0	0.00209593	0	0
DMBT1	1755	broad.mit.edu	37	10	124358342	124358342	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr10:124358342G>A	uc001lgk.1	+	26	3115	c.3009G>A	c.(3007-3009)CAG>CAA	p.Q1003Q	DMBT1_uc001lgl.1_Silent_p.Q993Q|DMBT1_uc001lgm.1_Silent_p.Q504Q|DMBT1_uc009xzz.1_Silent_p.Q1003Q|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1003	SRCR 8.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				ACAGGTGTCAGGGCCGAGTGG	0.562000													188	62					0	0	0.00361006	0	0
ECHS1	1892	broad.mit.edu	37	10	135184099	135184099	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr10:135184099G>A	uc001lmu.2	-	2	322	c.251C>T	c.(250-252)GCC>GTC	p.A84V		NM_004092	NP_004083	P30084	ECHM_HUMAN	mitochondrial short-chain enoyl-coenzyme A	84				A -> G (in Ref. 1; BAA03001).	fatty acid beta-oxidation	mitochondrial matrix	enoyl-CoA hydratase activity|protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;1.62e-06)|OV - Ovarian serous cystadenocarcinoma(35;5.75e-06)|Epithelial(32;7.58e-06)		GAGGACAATGGCCCCCACGGC	0.627000													9	2					0	0	0.000274275	0	0
MUC5B	727897	broad.mit.edu	37	11	1159302	1159302	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:1159302G>A	uc009ycr.1	+	12	1405	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GAGCTGCCAGGAGGTTCCATG	0.642000													23	5					0	0	0.00188189	0	0
MUC5B	727897	broad.mit.edu	37	11	1262615	1262615	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:1262615C>T	uc009ycr.1	+	47	6710	c.6584C>T	c.(6583-6585)ACC>ATC	p.T2195I	MUC5B_uc001ltb.2_Missense_Mutation_p.T1505I	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1502	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGTACCACCACCTGCCAGCCC	0.642000													10	3					0	0	0.000673444	0	0
Unknown	0	broad.mit.edu	37	11	55062994	55062994	+	RNA	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:55062994C>T	uc001nhl.1	-	3		c.641G>A								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		ATACATTCCTCTTAAAAGCTC	0.428000													8	16					0	0	0.000442599	0	0
SLC22A25	387601	broad.mit.edu	37	11	62933651	62933651	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:62933651G>A	uc001nwr.1	-	7	1150	c.1150C>T	c.(1150-1152)CTC>TTC	p.L384F	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	384	Helical; Name=8; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GCACCAAAGAGAGTCTGCAAC	0.498000													12	36					0	0	0.00185496	0	0
TIGD3	220359	broad.mit.edu	37	11	65124566	65124566	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:65124566C>T	uc001odo.3	+	2	1450	c.1287C>T	c.(1285-1287)CCC>CCT	p.P429P		NM_145719	NP_663771	Q6B0B8	TIGD3_HUMAN	tigger transposable element derived 3	429					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0						AGCCCCTGCCCACCAAAGCTG	0.562000													27	58					0	0	0.000878237	0	0
LTBP3	4054	broad.mit.edu	37	11	65309152	65309153	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:65309152_65309153CC>TT	uc001oej.2	-	19	2912_2913	c.2643_2644GG>AA	c.(2641-2646)GGGGCC>GGAACC	p.A882T	LTBP3_uc001oef.2_5'UTR|LTBP3_uc001oeg.2_5'UTR|LTBP3_uc001oeh.2_Missense_Mutation_p.A312T|LTBP3_uc010roi.1_Missense_Mutation_p.A765T|LTBP3_uc001oei.2_Missense_Mutation_p.A882T|LTBP3_uc010roj.1_Missense_Mutation_p.A583T|LTBP3_uc010rok.1_Missense_Mutation_p.A793T	NM_001130144	NP_001123616	Q9NS15	LTBP3_HUMAN	latent transforming growth factor beta binding	882	Cys-rich.|EGF-like 9; calcium-binding (Potential).					extracellular region	calcium ion binding|growth factor binding			central_nervous_system(2)|lung(1)	3						TTCTTGCAGGCCCCATGGGGAA	0.624000													24	32					0	0	6.4e-05	0	0
FOLR1	2348	broad.mit.edu	37	11	71907114	71907114	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:71907114G>A	uc001orz.1	+	6	805	c.667G>A	c.(667-669)GAG>AAG	p.E223K	FOLR1_uc001osa.1_Missense_Mutation_p.E223K|FOLR1_uc001osb.1_Missense_Mutation_p.E223K|FOLR1_uc001osc.1_Missense_Mutation_p.E223K|FOLR1_uc001osd.1_Missense_Mutation_p.E223K	NM_016724	NP_057936	P15328	FOLR1_HUMAN	folate receptor 1 precursor	223					cell death|folic acid transport|receptor-mediated endocytosis	anchored to membrane|extracellular region|integral to plasma membrane|membrane fraction	folic acid binding|receptor activity			ovary(1)	1						CAACCCCAATGAGGAGGTGGC	0.607000													36	32					0	0	0.000953801	0	0
C11orf30	56946	broad.mit.edu	37	11	76255449	76255449	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:76255449G>A	uc001oxl.2	+	19	2999	c.2856G>A	c.(2854-2856)CAG>CAA	p.Q952Q	C11orf30_uc001oxm.2_Silent_p.Q854Q|C11orf30_uc010rsb.1_Silent_p.Q967Q|C11orf30_uc010rsc.1_Silent_p.Q953Q|C11orf30_uc001oxn.2_Silent_p.Q953Q|C11orf30_uc010rsd.1_Silent_p.Q861Q|C11orf30_uc001oxo.1_Silent_p.Q306Q|C11orf30_uc010rse.1_Silent_p.Q199Q|C11orf30_uc001oxp.2_Silent_p.Q52Q	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	952	Gln-rich.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						CTAAACAGCAGAAACTTAGCC	0.527000													23	46					0	0	0.00278032	0	0
FAT3	120114	broad.mit.edu	37	11	92534248	92534248	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:92534248C>T	uc001pdj.3	+	9	8086	c.8069C>T	c.(8068-8070)TCC>TTC	p.S2690F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2690	Cadherin 24.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTAAAGCACTCCCTCATTCCT	0.448000										TCGA Ovarian(4;0.039)			245	86					0	0	0.00361006	0	0
CASP4	837	broad.mit.edu	37	11	104825688	104825688	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:104825688G>A	uc001pid.1	-	2	121	c.48C>T	c.(46-48)TCC>TCT	p.S16S	CASP4_uc001pib.1_5'UTR|CASP4_uc009yxg.1_5'UTR|CASP4_uc010rux.1_Silent_p.S16S|CASP4_uc010ruy.1_Silent_p.S16S	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	16	CARD.				apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		CTTTGCCCAGGGATTCCAACA	0.388000													36	8					0	0	0.00283554	0	0
SCN3B	55800	broad.mit.edu	37	11	123508986	123508986	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:123508986G>A	uc001pza.1	-	5	899	c.492C>T	c.(490-492)ATC>ATT	p.I164I	SCN3B_uc001pzb.1_Silent_p.I164I	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	164	Helical; (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		AGACCAGAAGGATGTACATCA	0.468000													27	6					0	0	0.00209593	0	0
OR8G2	26492	broad.mit.edu	37	11	124095419	124095419	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr11:124095419G>A	uc010saf.1	+	1	22	c.22G>A	c.(22-24)GAA>AAA	p.E8K		NM_001007249	NP_001007250	Q15614	OR8G2_HUMAN	olfactory receptor, family 8, subfamily G,	8						integral to membrane	olfactory receptor activity				0		Breast(109;0.0157)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.91e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		TTCCTCCGTAGAAACTGACCA	0.468000													23	4					0	0	0.00332997	0	0
SLC6A13	6540	broad.mit.edu	37	12	351819	351819	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:351819C>T	uc001qic.1	-	4	492	c.439G>A	c.(439-441)GAC>AAC	p.D147N	SLC6A13_uc009zdj.1_Missense_Mutation_p.D147N|SLC6A13_uc010sdl.1_Intron|SLC6A13_uc010sdm.1_Missense_Mutation_p.D28N	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	147	Extracellular (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CAGGGCAGGTCGATGGTGAAG	0.552000													9	17					0	0	0.000274275	0	0
EMG1	10436	broad.mit.edu	37	12	7080097	7080098	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:7080097_7080098CC>TT	uc001qsh.3	+	1	154_155	c.11_12CC>TT	c.(10-12)CCC>CTT	p.P4L	PHB2_uc001qsd.2_5'Flank|PHB2_uc010sft.1_5'Flank|PHB2_uc010sfu.1_5'Flank|EMG1_uc009zfo.2_RNA|EMG1_uc010sfv.1_RNA	NM_006331	NP_006322	Q92979	NEP1_HUMAN	ribosome biogenesis protein NEP1	4					ribosomal small subunit biogenesis	cytoplasm|nucleolus	rRNA (pseudouridine) methyltransferase activity|rRNA binding				0						ATGGCCGCGCCCAGTGATGGAT	0.550000													5	9					0	0	6.4e-05	0	0
CD163	9332	broad.mit.edu	37	12	7653916	7653916	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:7653916C>T	uc001qsz.3	-	3	404	c.276G>A	c.(274-276)CTG>CTA	p.L92L	CD163_uc001qta.3_Silent_p.L92L|CD163_uc009zfw.2_Silent_p.L92L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	92	SRCR 1.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTGGACATCCCAGCTGGTTAC	0.512000													47	54					0	0	0.0025221	0	0
ERP27	121506	broad.mit.edu	37	12	15087892	15087892	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:15087892G>T	uc001rco.2	-	3	252	c.231C>A	c.(229-231)AGC>AGA	p.S77R		NM_152321	NP_689534	Q96DN0	ERP27_HUMAN	endoplasmic reticulum protein 27 kDa precursor	77	Thioredoxin.					endoplasmic reticulum lumen				breast(1)	1						TTTGCACCATGCTATGGAGTA	0.443000													12	29					1.08611e-07	2.91868e-07	0.000978159	1	0
PLCZ1	89869	broad.mit.edu	37	12	18841104	18841104	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:18841104C>T	uc010sid.1	-	13	1701	c.1510G>A	c.(1510-1512)GGT>AGT	p.G504S	PLCZ1_uc001rdv.3_Missense_Mutation_p.G400S|PLCZ1_uc001rdw.3_Missense_Mutation_p.G245S|PLCZ1_uc001rdu.1_Missense_Mutation_p.G286S|PLCZ1_uc009zil.1_RNA	NM_033123	NP_149114	Q86YW0	PLCZ1_HUMAN	phospholipase C, zeta 1	504	C2.				intracellular signal transduction|lipid catabolic process|multicellular organismal development	nucleus|perinuclear region of cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)					AATGAATCACCTTTGTTAGAT	0.323000													62	83					0	0	0.00361006	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891976	18891976	+	Silent	SNP	G	A	A	rs139395998	byFrequency	TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:18891976G>A	uc001rdy.2	+	1	932	c.774G>A	c.(772-774)AGG>AGA	p.R258R	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	258					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				TTCTACGAAGGGATCTTCCAG	0.408000													33	44					0	0	0.00428921	0	0
CNTN1	1272	broad.mit.edu	37	12	41327666	41327666	+	Missense_Mutation	SNP	G	A	A	rs148624625		TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:41327666G>A	uc001rmm.1	+	9	1084	c.971G>A	c.(970-972)AGA>AAA	p.R324K	CNTN1_uc009zjy.1_Missense_Mutation_p.R324K|CNTN1_uc001rmn.1_Missense_Mutation_p.R313K|CNTN1_uc001rmo.2_Missense_Mutation_p.R324K	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	324	Ig-like C2-type 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CATCAAGCAAGAATTTATGTT	0.308000													22	22					0	0	0.00152264	0	0
KRT4	3851	broad.mit.edu	37	12	53207673	53207674	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:53207673_53207674CC>TT	uc001saz.2	-	1	662_663	c.391_392GG>AA	c.(391-393)GGG>AAG	p.G131K		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	57						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						GCTTTTGTTCCCCCTGAGGTTG	0.584000													60	75					0	0	6.4e-05	0	0
METTL7B	196410	broad.mit.edu	37	12	56077633	56077633	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:56077633C>T	uc010spr.1	+	2	744	c.535C>T	c.(535-537)CCA>TCA	p.P179S		NM_152637	NP_689850	Q6UX53	MET7B_HUMAN	methyltransferase like 7B precursor	179							methyltransferase activity				0						TGTGGCAGAACCATATGGAAG	0.552000													32	52					0	0	0.0024448	0	0
MON2	23041	broad.mit.edu	37	12	62960164	62960164	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:62960164T>A	uc001sre.2	+	29	4648	c.4257T>A	c.(4255-4257)GAT>GAA	p.D1419E	MON2_uc009zqj.2_Missense_Mutation_p.D1419E|MON2_uc010ssl.1_Missense_Mutation_p.D1347E|MON2_uc010ssm.1_Missense_Mutation_p.D1390E|MON2_uc010ssn.1_Missense_Mutation_p.D1413E|MON2_uc001srf.2_Missense_Mutation_p.D1182E|MON2_uc001srg.2_Missense_Mutation_p.D288E	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	1420					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		TAGTTGTGGATTTATACCAAA	0.343000													55	78					0	0	0.00361006	0	0
TMTC2	160335	broad.mit.edu	37	12	83424584	83424584	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:83424584A>T	uc001szt.2	+	9	2510	c.2078A>T	c.(2077-2079)AAG>ATG	p.K693M	TMTC2_uc010suk.1_Missense_Mutation_p.K448M	NM_152588	NP_689801	Q8N394	TMTC2_HUMAN	transmembrane and tetratricopeptide repeat	693	TPR 7.					endoplasmic reticulum|integral to membrane	binding			ovary(2)	2						AAGGGTCGTAAGAGTGAGGCT	0.428000													22	26					0	0	0.00278032	0	0
TBX3	6926	broad.mit.edu	37	12	115114221	115114221	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:115114221C>T	uc001tvt.1	-	6	1960	c.996G>A	c.(994-996)GAG>GAA	p.E332E	TBX3_uc001tvu.1_Silent_p.E312E	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	332					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		AGGTCCCATTCTCCTTTTTGT	0.502000													60	62					0	0	0.00361006	0	0
MED13L	23389	broad.mit.edu	37	12	116429501	116429502	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:116429501_116429502GG>AA	uc001tvw.2	-	17	3312_3313	c.3257_3258CC>TT	c.(3256-3258)CCC>CTT	p.P1086L		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1086					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		GTGTAGTAGAGGGGGTGGAGGC	0.584000													23	31					0	0	6.4e-05	0	0
KDM2B	84678	broad.mit.edu	37	12	121878938	121878938	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr12:121878938G>A	uc001uat.2	-	20	3487	c.3383C>T	c.(3382-3384)TCC>TTC	p.S1128F	KDM2B_uc001uaq.2_Missense_Mutation_p.S568F|KDM2B_uc010szy.1_Missense_Mutation_p.S568F|KDM2B_uc001uar.2_Missense_Mutation_p.S719F|KDM2B_uc001uas.2_Missense_Mutation_p.S1059F|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.S376F|KDM2B_uc010szx.1_Missense_Mutation_p.S376F|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1128					embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						GAGGTCGAGGGAGACGGGCTG	0.607000													18	26					0	0	0.00074312	0	0
MTUS2	23281	broad.mit.edu	37	13	29600485	29600485	+	Silent	SNP	A	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr13:29600485A>G	uc001usl.3	+	1	1738	c.1680A>G	c.(1678-1680)ACA>ACG	p.T560T		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	550						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						AGCCTACAACACCCAGTAGCA	0.502000													42	66					0	0	0.00222228	0	0
PCDH20	64881	broad.mit.edu	37	13	61987277	61987277	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr13:61987277G>A	uc001vid.3	-	2	1319	c.955C>T	c.(955-957)CTC>TTC	p.L319F	PCDH20_uc010thj.1_Missense_Mutation_p.L319F	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	292	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		TCTGTGAAGAGAGGGCAATTG	0.493000													26	47					0	0	0.00332997	0	0
OR4K1	79544	broad.mit.edu	37	14	20404494	20404494	+	Silent	SNP	C	T	T	rs141997601		TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:20404494C>T	uc001vwj.1	+	1	669	c.669C>T	c.(667-669)ATC>ATT	p.I223I		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	223	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TCATTTTGATCGGTGTCCGAT	0.423000													21	26					0	0	0.00152264	0	0
PNN	5411	broad.mit.edu	37	14	39647049	39647049	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:39647049C>T	uc001wuw.3	+	6	524	c.427C>T	c.(427-429)CGG>TGG	p.R143W		NM_002687	NP_002678	Q9H307	PININ_HUMAN	pinin, desmosome associated protein	143	Necessary for interaction with RNPS1.|Necessary for mediating alternative 5' splicing.				cell adhesion|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|desmosome|intermediate filament|nuclear speck	DNA binding|protein binding|structural molecule activity			ovary(1)	1	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0119)		CTTTAGGAACCGGCGAATATT	0.348000													147	254					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	14	66480003	66480003	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:66480003C>T	uc001xit.2	-	1	630	c.505G>A	c.(505-507)GGA>AGA	p.G169R						SubName: Full=Nuclease sensitive element binding protein-1;																		CTCTCCGATCCCTCGTTCTTT	0.567000													23	16					0	0	0.000878237	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633399	70633399	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:70633399C>T	uc001xly.2	-	2	2495	c.1741G>A	c.(1741-1743)GAA>AAA	p.E581K	SLC8A3_uc001xlw.2_Missense_Mutation_p.E581K|SLC8A3_uc001xlx.2_Missense_Mutation_p.E581K|SLC8A3_uc001xlz.2_Missense_Mutation_p.E581K|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	581	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TATGTGTCTTCAAAGTCCTCA	0.507000													34	53					0	0	0.00128727	0	0
YLPM1	56252	broad.mit.edu	37	14	75283735	75283735	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:75283735C>T	uc001xqj.3	+	14	5911	c.5787C>T	c.(5785-5787)ATC>ATT	p.I1929I	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Silent_p.I412I	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1734					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		TTCCCTTCATCATCCTGGATG	0.398000													15	14					0	0	0.00244969	0	0
CCDC88C	440193	broad.mit.edu	37	14	91779804	91779805	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:91779804_91779805CC>TT	uc010aty.2	-	15	2454_2455	c.2355_2356GG>AA	c.(2353-2358)TTGGAG>TTAAAG	p.E786K		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	786	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				AGCTCACTCTCCAAGGTCTGCG	0.668000													12	18					0	0	6.4e-05	0	0
TCL6	27004	broad.mit.edu	37	14	96136862	96136862	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:96136862C>T	uc001yeq.2	+	6	1811	c.342C>T	c.(340-342)TTC>TTT	p.F114F	TCL6_uc001yep.1_RNA|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Silent_p.F56F|TCL6_uc001yeu.2_3'UTR|TCL6_uc001yev.2_Intron|TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL6_uc010avk.1_RNA	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		GTCCTTTTTTCCTTCCTTCTC	0.502000			T	TRA@	T-ALL								21	22					0	0	0.00278032	0	0
HHIPL1	84439	broad.mit.edu	37	14	100118833	100118833	+	Silent	SNP	C	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:100118833C>A	uc010avs.2	+	2	593	c.528C>A	c.(526-528)GCC>GCA	p.A176A	HHIPL1_uc001ygl.1_Silent_p.A176A	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	176					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				ACGTGGTAGCCGATGCCAAGG	0.627000													4	90					0.00116845	0.00310791	0.00116845	1	0
WDR25	79446	broad.mit.edu	37	14	100992260	100992261	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:100992260_100992261CC>TT	uc010avx.2	+	5	1248_1249	c.1155_1156CC>TT	c.(1153-1158)CTCCGG>CTTTGG	p.R386W	WDR25_uc001yhm.2_Missense_Mutation_p.R378W|WDR25_uc001yhn.2_Missense_Mutation_p.R386W|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Missense_Mutation_p.R129W	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	386	WD 4.										0		Melanoma(154;0.212)				TCCTGTTCCTCCGGGAAGGCTC	0.599000													15	26					0	0	6.4e-05	0	0
MIR543	100126335	broad.mit.edu	37	14	101498401	101498401	+	RNA	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:101498401C>T	hsa-mir-543|MI0005565	+			c.78C>T			MIR495_hsa-mir-495|MI0003135_5'Flank																	0						TTTTCAGTATCCTATTCTGCC	0.493000													18	31					0	0	0.00121646	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102509020	102509020	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:102509020C>T	uc001yks.2	+	69	12612	c.12448C>T	c.(12448-12450)CCG>TCG	p.P4150S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4150	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GTTCGAGCCACCGCCAGGGGT	0.582000													15	36					0	0	0.00152264	0	0
ADAM6	8755	broad.mit.edu	37	14	106967386	106967386	+	RNA	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr14:106967386C>T	uc010tyt.1	-	201		c.9055G>A								Parts of antibodies, mostly variable regions.												0						AATGACAGTCCTCTAAACTGG	0.572000													36	44					0	0	0.00327116	0	0
Unknown	0	broad.mit.edu	37	15	20488885	20488885	+	RNA	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:20488885G>A	uc001ytf.1	+	2		c.368G>A								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTGGACTGCTGGAGTTTAGGA	0.408000													14	89					0	0	0.000566183	0	0
NDN	4692	broad.mit.edu	37	15	23931501	23931501	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:23931501C>T	uc001ywk.2	-	1	950	c.864G>A	c.(862-864)CAG>CAA	p.Q288Q		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	288	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		AGGGCCAGGCCTGGGGGTCTT	0.597000									Prader-Willi_syndrome				33	43					0	0	0.0024448	0	0
APBA2	321	broad.mit.edu	37	15	29347005	29347005	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:29347005C>T	uc001zck.2	+	3	1125	c.918C>T	c.(916-918)ACC>ACT	p.T306T	APBA2_uc010azj.2_Silent_p.T306T|APBA2_uc010uat.1_Silent_p.T306T|APBA2_uc001zcl.2_Silent_p.T306T|APBA2_uc010uas.1_Silent_p.T306T	NM_005503	NP_005494	Q99767	APBA2_HUMAN	amyloid beta A4 precursor protein-binding,	306					nervous system development|protein transport		protein binding				0		all_lung(180;1.73e-12)|Breast(32;2.89e-05)|Colorectal(260;0.234)		all cancers(64;7.44e-11)|Epithelial(43;5.74e-10)|GBM - Glioblastoma multiforme(186;0.026)|BRCA - Breast invasive adenocarcinoma(123;0.0286)|Lung(196;0.24)		AGACCAGGACCCCAGAAGAGA	0.672000													4	17					0	0	0.000602214	0	0
LOC723972	723972	broad.mit.edu	37	15	35529613	35529613	+	RNA	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:35529613G>A	uc001ziy.2	+	1		c.87G>A				NR_003144				Homo sapiens hepatopoietin PCn127 mRNA, complete cds.												0						ACAGTCGGTCGAATGAAGGCA	0.488000													62	82					0	0	0.00361006	0	0
MAPKBP1	23005	broad.mit.edu	37	15	42111090	42111090	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:42111090C>T	uc001zok.3	+	21	2530	c.2244C>T	c.(2242-2244)CGC>CGT	p.R748R	MAPKBP1_uc001zoj.3_Silent_p.R742R|MAPKBP1_uc010bcj.2_Silent_p.R249R|MAPKBP1_uc010bci.2_Silent_p.R742R|MAPKBP1_uc010udb.1_Silent_p.R581R|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_Silent_p.R249R	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	748										central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		CCGAGTTGCGCCAGCGTCAGC	0.597000													26	18					0	0	0.00395357	0	0
AP4E1	23431	broad.mit.edu	37	15	51291285	51291285	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:51291285G>A	uc001zyx.1	+	19	2951	c.2921G>A	c.(2920-2922)GGA>GAA	p.G974E	AP4E1_uc010bex.1_Intron	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	974					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		GAGCAACCTGGATGCTGTTTG	0.348000													27	45					0	0	0.00375469	0	0
TLN2	83660	broad.mit.edu	37	15	62993406	62993406	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:62993406C>T	uc002alb.3	+	14	1689	c.1689C>T	c.(1687-1689)CTC>CTT	p.L563L		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	563					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TTGTTAACCTCACAGCTGGTA	0.393000													24	32					0	0	0.00229938	0	0
IQCH	64799	broad.mit.edu	37	15	67681242	67681242	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:67681242C>T	uc002aqo.1	+	12	1577	c.1530C>T	c.(1528-1530)ATC>ATT	p.I510I	IQCH_uc002aqq.1_Silent_p.I258I|IQCH_uc002aqp.1_Silent_p.I262I	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	510										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		ACAAAAAAATCCTAAGTCTAC	0.403000													32	48					0	0	0.0024448	0	0
PTPN9	5780	broad.mit.edu	37	15	75798294	75798294	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:75798294A>T	uc002bal.2	-	7	1198	c.690T>A	c.(688-690)TGT>TGA	p.C230*		NM_002833	NP_002824	P43378	PTN9_HUMAN	protein tyrosine phosphatase, non-receptor type	230	CRAL-TRIO.					cytoplasmic part	non-membrane spanning protein tyrosine phosphatase activity|protein binding			lung(1)|skin(1)	2						TTTCTGGAAGACACTCCCTGG	0.493000													32	49					0	0	0.00283554	0	0
SLC28A1	9154	broad.mit.edu	37	15	85467334	85467335	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:85467334_85467335CC>TT	uc002blg.2	+	12	1278_1279	c.1076_1077CC>TT	c.(1075-1077)TCC>TTT	p.S359F	SLC28A1_uc010upd.1_Missense_Mutation_p.S281F|SLC28A1_uc010bnb.2_Missense_Mutation_p.S359F|SLC28A1_uc010upe.1_Missense_Mutation_p.S359F|SLC28A1_uc010upf.1_Missense_Mutation_p.S359F|SLC28A1_uc010upg.1_Missense_Mutation_p.S359F	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	359					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GCCTACATCTCCTTTGGGGTAG	0.584000													30	61					0	0	6.4e-05	0	0
C15orf42	90381	broad.mit.edu	37	15	90168190	90168190	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:90168190C>T	uc002boe.2	+	20	4649	c.4649C>T	c.(4648-4650)TCC>TTC	p.S1550F	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1550					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GCTTGGCATTCCACAGACTCT	0.537000													25	47					0	0	0.00395357	0	0
FES	2242	broad.mit.edu	37	15	91433699	91433699	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:91433699C>T	uc002bpv.2	+	10	1401	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	FES_uc010uqj.1_Silent_p.F377F|FES_uc010uqk.1_Silent_p.F417F|FES_uc002bpw.2_RNA|FES_uc010bny.2_Silent_p.F377F|FES_uc002bpx.2_Silent_p.F435F|FES_uc002bpy.2_Silent_p.F377F	NM_002005	NP_001996	P07332	FES_HUMAN	feline sarcoma oncogene isoform 1	435					axon guidance|cell proliferation|peptidyl-tyrosine phosphorylation	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(2)	2	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			CAGGAATCTTCCGCCCCAAGT	0.617000													70	104					0	0	0.00361006	0	0
SPATA8	145946	broad.mit.edu	37	15	97327454	97327454	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr15:97327454G>A	uc002bue.2	+	2	371	c.161G>A	c.(160-162)GGA>GAA	p.G54E	uc010urp.1_5'Flank|uc002bud.1_5'Flank	NM_173499	NP_775770	Q6RVD6	SPAT8_HUMAN	spermatogenesis associated 8	54										ovary(1)|skin(1)	2	Melanoma(26;0.0142)|Lung NSC(78;0.041)|all_lung(78;0.0468)		OV - Ovarian serous cystadenocarcinoma(32;0.0718)			GGTGGCCCAGGAGGCCTCAAG	0.577000													21	50					0	0	0.00332997	0	0
MEFV	4210	broad.mit.edu	37	16	3304352	3304352	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:3304352C>T	uc002cun.1	-	2	756	c.716G>A	c.(715-717)CGA>CAA	p.R239Q		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	239					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	GCTTCTAGGTCGCATCTTTCC	0.617000													75	78					0	0	0.00361006	0	0
PPL	5493	broad.mit.edu	37	16	4934734	4934735	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:4934734_4934735CC>TT	uc002cyd.1	-	22	4011_4012	c.3921_3922GG>AA	c.(3919-3924)GAGGTG>GAAATG	p.V1308M		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1308	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						AGAGACGCCACCTCCTCCTTGG	0.545000													96	136					0	0	6.4e-05	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857959	9857959	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:9857959G>A	uc002czo.3	-	13	3990	c.3442C>T	c.(3442-3444)CCG>TCG	p.P1148S	GRIN2A_uc010uym.1_Missense_Mutation_p.P1148S|GRIN2A_uc010uyn.1_Missense_Mutation_p.P991S|GRIN2A_uc002czr.3_Missense_Mutation_p.P1148S	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1148	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TAGGGGTCCGGGAAGTCCACG	0.522000													61	91					0	0	0.00361006	0	0
KIAA0430	9665	broad.mit.edu	37	16	15719493	15719493	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:15719493G>A	uc002ddr.2	-	8	1882	c.1689C>T	c.(1687-1689)CGC>CGT	p.R563R	KIAA0430_uc002ddq.2_Intron|KIAA0430_uc010uzv.1_Silent_p.R559R|KIAA0430_uc010uzw.1_Silent_p.R561R	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	562						peroxisome	nucleotide binding|RNA binding				0						GCTTCTGAGCGCGCTCTGCAC	0.438000													71	69					0	0	0.00361006	0	0
ZP2	7783	broad.mit.edu	37	16	21210907	21210907	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:21210907G>A	uc002dii.2	-	16	1911	c.1911C>T	c.(1909-1911)TCC>TCT	p.S637S	ZP2_uc010bwn.1_Silent_p.S667S	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	637	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		TGTGCCTAGAGGACACAGGGC	0.443000													21	32					0	0	0.00278032	0	0
ABCC11	85320	broad.mit.edu	37	16	48209175	48209175	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:48209175G>A	uc002eff.1	-	25	4042	c.3692C>T	c.(3691-3693)ACC>ATC	p.T1231I	ABCC11_uc002efg.1_Missense_Mutation_p.T1231I|ABCC11_uc002efh.1_Missense_Mutation_p.T1231I|ABCC11_uc010cbg.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	1231	ABC transporter 2.|Cytoplasmic (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				TCACCTGATGGTTCCTGAGAG	0.602000									Cerumen_Type				36	10					0	0	0.00222228	0	0
POLR2C	5432	broad.mit.edu	37	16	57503961	57503961	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:57503961G>T	uc002elt.1	+	7	614	c.528G>T	c.(526-528)TGG>TGT	p.W176C		NM_032940	NP_116558	P19387	RPB3_HUMAN	DNA directed RNA polymerase II polypeptide C	176					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|protein dimerization activity				0						ATGCCAAGTGGAACCCTACTG	0.542000													13	7					9.31168e-06	2.49374e-05	0.00185496	1	0
ZFHX3	463	broad.mit.edu	37	16	72831236	72831236	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:72831236A>T	uc002fck.2	-	9	6018	c.5345T>A	c.(5344-5346)ATG>AAG	p.M1782K	ZFHX3_uc002fcl.2_Missense_Mutation_p.M868K	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1782					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				CTCAGTTGTCATGGGGAAGTG	0.567000													46	17					0	0	0.00321405	0	0
USP10	9100	broad.mit.edu	37	16	84778424	84778424	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr16:84778424A>T	uc002fii.2	+	4	479	c.337A>T	c.(337-339)ATC>TTC	p.I113F	USP10_uc010voe.1_Missense_Mutation_p.I117F|USP10_uc010vof.1_Intron|USP10_uc002fij.2_5'UTR	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	113					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						CTATGGCTCCATCGACTGCCA	0.488000													51	14					0	0	0.00361006	0	0
AIPL1	23746	broad.mit.edu	37	17	6337259	6337259	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:6337259C>T	uc002gcp.2	-	2	351	c.256G>A	c.(256-258)GAG>AAG	p.E86K	AIPL1_uc002gcq.2_Intron|AIPL1_uc002gcr.2_Missense_Mutation_p.E86K|AIPL1_uc010clk.2_Missense_Mutation_p.E64K|AIPL1_uc010cll.2_Missense_Mutation_p.E86K|AIPL1_uc002gcs.2_Missense_Mutation_p.E86K	NM_014336	NP_055151	Q9NZN9	AIPL1_HUMAN	aryl hydrocarbon receptor interacting	86	PPIase FKBP-type.				protein farnesylation|protein folding|visual perception	cytoplasm|nucleus	farnesylated protein binding|unfolded protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		CACCAGAACTCGGCCACCTCG	0.602000													8	14					0	0	0.00307968	0	0
FXR2	9513	broad.mit.edu	37	17	7504810	7504810	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:7504810G>A	uc002gia.1	-	7	804	c.577C>T	c.(577-579)CTG>TTG	p.L193L	FXR2_uc010vud.1_Silent_p.L193L	NM_004860	NP_004851	P51116	FXR2_HUMAN	fragile X mental retardation syndrome related	193						cytosolic large ribosomal subunit	protein binding|RNA binding	p.?(1)			0				READ - Rectum adenocarcinoma(115;0.17)		TCACCCAGCAGAGATGCTCGC	0.493000													89	124					0	0	0.00361006	0	0
WRAP53	55135	broad.mit.edu	37	17	7592120	7592120	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:7592120C>T	uc010vuh.1	+	2	309	c.154C>T	c.(154-156)CGG>TGG	p.R52W	WRAP53_uc010vui.1_Missense_Mutation_p.R52W|WRAP53_uc002gip.2_Missense_Mutation_p.R52W|WRAP53_uc002gir.2_Missense_Mutation_p.R52W|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Missense_Mutation_p.R52W|TP53_uc010cnh.1_5'Flank|TP53_uc010cni.1_5'Flank|TP53_uc002gim.2_5'Flank|TP53_uc002gij.2_5'Flank|TP53_uc002gin.2_5'Flank|TP53_uc002gio.2_5'Flank|TP53_uc010vug.1_5'Flank|TP53_uc010cnk.1_5'Flank	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	52	Pro-rich.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						GGATCCGCCCCGGTTGTCCCC	0.612000													46	62					0	0	0.00361006	0	0
MYH4	4622	broad.mit.edu	37	17	10369624	10369624	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:10369624T>C	uc002gmn.2	-	4	425	c.314A>G	c.(313-315)AAC>AGC	p.N105S	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	105	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTCTTTGAGGTTATACAGCAC	0.453000													32	65					0	0	0.00428921	0	0
DNAH9	1770	broad.mit.edu	37	17	11687826	11687826	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:11687826C>T	uc002gne.2	+	41	8099	c.8031C>T	c.(8029-8031)TTC>TTT	p.F2677F	DNAH9_uc010coo.2_Silent_p.F1971F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2677	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACTACATCTTCAACCTCAGAG	0.478000													68	80					0	0	0.00361006	0	0
NCOR1	9611	broad.mit.edu	37	17	16089914	16089914	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:16089914G>A	uc002gpo.2	-	3	436	c.196C>T	c.(196-198)CGA>TGA	p.R66*	NCOR1_uc002gpn.2_Nonsense_Mutation_p.R66*|NCOR1_uc002gpp.1_Intron|NCOR1_uc002gpr.2_Intron|NCOR1_uc002gps.1_Nonsense_Mutation_p.R66*|NCOR1_uc010coz.1_5'UTR|NCOR1_uc010cpb.1_Nonsense_Mutation_p.R66*|NCOR1_uc010cpa.1_Nonsense_Mutation_p.R66*|NCOR1_uc002gpu.2_Nonsense_Mutation_p.R66*	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	66	Interaction with ZBTB33 and HEXIM1.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		GGTCGCCTTCGAAGCTGTTGC	0.413000													35	42					0	0	0.00375469	0	0
LGALS9C	654346	broad.mit.edu	37	17	18396162	18396162	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:18396162C>G	uc002gtw.2	+	10	983	c.913C>G	c.(913-915)CAG>GAG	p.Q305E	LGALS9C_uc010vyb.1_Missense_Mutation_p.Q217E	NM_001040078	NP_001035167	Q6DKI2	LEG9C_HUMAN	galectin 9 like	305	Galectin 2.						sugar binding			ovary(1)	1						CGTCCGAGGCCAGAGCTTCTC	0.582000													3	22					0	0	0.00116845	0	0
C17orf53	78995	broad.mit.edu	37	17	42225822	42225822	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:42225822C>T	uc002ifi.1	+	3	836	c.651C>T	c.(649-651)ATC>ATT	p.I217I	C17orf53_uc010czq.1_Silent_p.I217I|C17orf53_uc002ifj.1_Silent_p.I217I|C17orf53_uc002ifk.1_RNA	NM_024032	NP_076937	Q8N3J3	CQ053_HUMAN	hypothetical protein LOC78995	217											0		Breast(137;0.0364)|Prostate(33;0.0376)		BRCA - Breast invasive adenocarcinoma(366;0.114)		TGCCTGCCATCCACAAAGCGG	0.572000													53	17					0	0	0.00361006	0	0
COX11	1353	broad.mit.edu	37	17	53045916	53045916	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:53045916C>T	uc010wng.1	-	1	149	c.92G>A	c.(91-93)AGG>AAG	p.R31K	STXBP4_uc010dcc.1_5'Flank|STXBP4_uc002iuf.1_5'Flank|STXBP4_uc010dcd.1_5'Flank|COX11_uc010wne.1_RNA|COX11_uc010wnf.1_RNA|COX11_uc002iue.2_RNA|COX11_uc010wnh.1_Missense_Mutation_p.R31K	NM_004375	NP_004366	Q9Y6N1	COX11_HUMAN	COX11 homolog, cytochrome c oxidase assembly	31					respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	copper ion binding|cytochrome-c oxidase activity|electron carrier activity			ovary(1)	1						CGGCTCTACCCTCTCTGCAGC	0.632000													42	98					0	0	0.00170553	0	0
BPTF	2186	broad.mit.edu	37	17	65972002	65972002	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:65972002C>T	uc002jgf.2	+	27	8715	c.8654C>T	c.(8653-8655)TCC>TTC	p.S2885F	BPTF_uc002jge.2_Missense_Mutation_p.S2868F|BPTF_uc002jgg.2_Missense_Mutation_p.S600F|BPTF_uc002jgh.2_Missense_Mutation_p.S402F	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	3011	Bromo.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CCAAGTGACTCCCCATTTTAC	0.388000													61	48					0	0	0.00361006	0	0
ABCA9	10350	broad.mit.edu	37	17	67047176	67047176	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr17:67047176A>T	uc002jhu.2	-	2	235	c.92T>A	c.(91-93)TTG>TAG	p.L31*	ABCA9_uc010dez.2_Nonsense_Mutation_p.L31*|ABCA9_uc002jhv.2_Nonsense_Mutation_p.L31*	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	31	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity	p.L31F(1)		ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					GCATACCAACAAGGTCTGTCT	0.378000													36	47					0	0	0.00428921	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14851592	14851592	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr18:14851592G>A	uc010dlo.2	+	36	3472	c.3292G>A	c.(3292-3294)GTA>ATA	p.V1098I	ANKRD30B_uc010xal.1_Missense_Mutation_p.V240I	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1183	Potential.									ovary(1)|skin(1)	2						AAAACTGGAAGTAGCCACACT	0.323000													15	23					0	0	0.00400662	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995558	19995558	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr18:19995558G>A	uc002ktv.1	-	1	2321	c.2217C>T	c.(2215-2217)TTC>TTT	p.F739F		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	739	Pro-rich.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GGGCTGGGGGGAAAAATGCAG	0.498000													15	11					0	0	0.00400662	0	0
ASXL3	80816	broad.mit.edu	37	18	31320017	31320017	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr18:31320017A>C	uc010dmg.1	+	11	2704	c.2649A>C	c.(2647-2649)TTA>TTC	p.L883F	ASXL3_uc002kxq.2_Missense_Mutation_p.L590F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	883					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CATTGGAATTATCTGTCTTTT	0.353000													41	69					0	0	0.00361006	0	0
RNF165	494470	broad.mit.edu	37	18	44013470	44013470	+	Splice_Site	SNP	T	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr18:44013470T>G	uc002lcb.1	+	2	428	c.377_splice	c.e2+2	p.R126_splice	RNF165_uc002lby.1_Splice_Site_p.R59_splice|RNF165_uc010dnn.1_Intron	NM_152470	NP_689683	Q6ZSG1	RN165_HUMAN	ring finger protein 165								zinc ion binding				0				READ - Rectum adenocarcinoma(1;0.0873)		GCACCCCAGGTTGGTGCTGCC	0.363000													15	19					0	0	0.000566183	0	0
DCC	1630	broad.mit.edu	37	18	51025846	51025846	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr18:51025846G>A	uc002lfe.1	+	27	4664	c.4077G>A	c.(4075-4077)CCG>CCA	p.P1359P	DCC_uc010dpf.1_Silent_p.P992P	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1359	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAATAGAACCGAAAGTCCCTT	0.448000													57	90					0	0	0.00361006	0	0
ALPK2	115701	broad.mit.edu	37	18	56184333	56184333	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr18:56184333C>T	uc002lhj.3	-	9	5961	c.5747G>A	c.(5746-5748)GGT>GAT	p.G1916D		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1916	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						GGCGATCTGACCACGCAGGCG	0.542000													22	34					0	0	0.00229938	0	0
SERPINB4	6318	broad.mit.edu	37	18	61310740	61310740	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr18:61310740C>T	uc002ljf.2	-	2	158	c.72G>A	c.(70-72)GAG>GAA	p.E24E	SERPINB4_uc002lje.2_Silent_p.E24E|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	24					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						AGATGTTGTTCTCTTTTGATT	0.428000													41	81					0	0	0.00321405	0	0
TMPRSS9	360200	broad.mit.edu	37	19	2399055	2399055	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:2399055C>T	uc010xgx.1	+	3	276	c.276C>T	c.(274-276)CAC>CAT	p.H92H	TMPRSS9_uc002lvv.1_Silent_p.H126H	NM_182973	NP_892018	Q7Z410	TMPS9_HUMAN	transmembrane protease, serine 9	92	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCAGCTGCACTTTCTGCTGC	0.602000													8	15					0	0	0.000673444	0	0
MUC16	94025	broad.mit.edu	37	19	9063923	9063923	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:9063923C>T	uc002mkp.2	-	3	23727	c.23523G>A	c.(23521-23523)GGG>GGA	p.G7841G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7843	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGAGCTGGTCCCTTCAGAGC	0.557000													29	32					0	0	0.00127121	0	0
MUC16	94025	broad.mit.edu	37	19	9069895	9069895	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:9069895G>A	uc002mkp.2	-	3	17755	c.17551C>T	c.(17551-17553)CCT>TCT	p.P5851S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5853	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTACAAAAGGAAAAGTGGAG	0.478000													70	96					0	0	0.00361006	0	0
ZNF440	126070	broad.mit.edu	37	19	11942603	11942603	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:11942603T>A	uc002msp.1	+	4	768	c.612T>A	c.(610-612)TTT>TTA	p.F204L		NM_152357	NP_689570	Q8IYI8	ZN440_HUMAN	zinc finger protein 440	204	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AATGTAAGTTTTGTGGGAAAG	0.368000													55	83					0	0	0.00361006	0	0
CACNA1A	773	broad.mit.edu	37	19	13409919	13409919	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:13409919G>A	uc010dze.2	-	19	2767	c.2531C>T	c.(2530-2532)CCC>CTC	p.P844L	CACNA1A_uc010dzc.2_Missense_Mutation_p.P369L|CACNA1A_uc002mwy.3_Missense_Mutation_p.P843L|CACNA1A_uc010xne.1_Missense_Mutation_p.P372L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	844	Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	GTCCACGGTGGGCTCGGCCGC	0.706000													10	14					0	0	0.000442599	0	0
OR10H5	284433	broad.mit.edu	37	19	15905601	15905601	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:15905601T>G	uc010xos.1	+	1	743	c.743T>G	c.(742-744)GTG>GGG	p.V248G		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CACCTCACTGTGGTGGTCGTG	0.562000													15	35					0	0	0.00152264	0	0
CHERP	10523	broad.mit.edu	37	19	16631005	16631005	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:16631005G>T	uc002nei.1	-	15	2491	c.2417C>A	c.(2416-2418)TCC>TAC	p.S806Y	MED26_uc002nee.2_Intron|C19orf44_uc002neh.1_3'UTR|C19orf44_uc010eai.1_RNA|CHERP_uc010xpg.1_Missense_Mutation_p.S345Y	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	806	Arg-rich.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						TCTTCCTGGGGAGTACGACTT	0.647000													33	46					3.03874e-20	8.27977e-20	0.00327116	1	0
TULP2	7288	broad.mit.edu	37	19	49398348	49398348	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:49398348C>T	uc002pkz.2	-	6	572	c.421G>A	c.(421-423)GAA>AAA	p.E141K		NM_003323	NP_003314	O00295	TULP2_HUMAN	tubby like protein 2	141					visual perception	cytoplasm|extracellular region				ovary(1)|kidney(1)|skin(1)	3		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000259)|all cancers(93;0.000435)|Epithelial(262;0.0221)|GBM - Glioblastoma multiforme(486;0.0234)		ACGGAGACTTCCTCCAATTCT	0.527000													31	32					0	0	0.00327116	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50462665	50462665	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:50462665C>T	uc010ybh.1	-	5	1100	c.1009G>A	c.(1009-1011)GAG>AAG	p.E337K	SIGLEC11_uc010ybi.1_Missense_Mutation_p.E337K	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	337	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		AGCCTGTTCTCCGCTCGGCAG	0.662000													44	45					0	0	0.00361006	0	0
NR1H2	7376	broad.mit.edu	37	19	50881049	50881049	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:50881049C>T	uc010enw.2	+	4	379	c.103C>T	c.(103-105)CCG>TCG	p.P35S	NR1H2_uc002prv.3_RNA|NR1H2_uc002prz.3_Missense_Mutation_p.P35S|NR1H2_uc002psa.3_Missense_Mutation_p.P35S	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	35					negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		GGAGGAGGGTCCGGAGCCGTG	0.642000													28	38					0	0	0.00209593	0	0
MYBPC2	4606	broad.mit.edu	37	19	50947068	50947068	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:50947068G>A	uc002psf.2	+	11	1179	c.1128G>A	c.(1126-1128)GTG>GTA	p.V376V		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	376	Ig-like C2-type 3.				cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		GTGCCCAGGTGATGTGGTAAG	0.517000													69	80					0	0	0.00361006	0	0
KLK11	11012	broad.mit.edu	37	19	51528042	51528042	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:51528042C>T	uc002pvd.1	-	3	257	c.145G>A	c.(145-147)GGG>AGG	p.G49R	KLK11_uc002pvb.1_Missense_Mutation_p.G17R|KLK11_uc002pve.1_5'UTR|KLK11_uc002pvf.1_Missense_Mutation_p.G17R|KLK11_uc002pvc.3_Missense_Mutation_p.G17R|KLK11_uc010eom.2_Missense_Mutation_p.G17R	NM_144947	NP_659196	Q9UBX7	KLK11_HUMAN	kallikrein 11 isoform 2 precursor	49					proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00327)|GBM - Glioblastoma multiforme(134;0.00878)		GTCTCTCCCCCTACAAGCCCT	0.612000													7	9					0	0	0.00307968	0	0
PRKCG	5582	broad.mit.edu	37	19	54406370	54406370	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:54406370C>T	uc002qcq.1	+	15	1901	c.1619C>T	c.(1618-1620)TCC>TTC	p.S540F	PRKCG_uc010yeg.1_Missense_Mutation_p.S540F|PRKCG_uc010yeh.1_Missense_Mutation_p.S427F	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma	540	Protein kinase.				activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		GATTGGTGGTCCTTTGGAGTT	0.537000													110	184					0	0	0.00361006	0	0
NLRP11	204801	broad.mit.edu	37	19	56320962	56320962	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:56320962G>A	uc010ygf.1	-	5	1725	c.1014C>T	c.(1012-1014)GTC>GTT	p.V338V	NLRP11_uc002qlz.2_Silent_p.V239V|NLRP11_uc002qmb.2_Silent_p.V239V|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	338	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		ATAAGATGGCGACTCGGCACA	0.532000													22	19					0	0	0.00188189	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58564834	58564834	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr19:58564834G>A	uc002qrc.1	+	6	889	c.642G>A	c.(640-642)TGG>TGA	p.W214*		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	214					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CGAGTATCTGGGACGAGCCTG	0.632000													31	49					0	0	0.00283554	0	0
MYT1L	23040	broad.mit.edu	37	2	1843100	1843100	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:1843100C>T	uc002qxe.2	-	21	3728	c.2901G>A	c.(2899-2901)GGG>GGA	p.G967G	MYT1L_uc002qxd.2_Silent_p.G965G|MYT1L_uc010ewk.2_5'UTR	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	967	C2HC-type 5.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		ACGCGTACTTCCCAGTGATGT	0.642000													54	57					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21228633	21228633	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:21228633G>A	uc002red.2	-	26	11235	c.11107C>T	c.(11107-11109)CGT>TGT	p.R3703C		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3703					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GTTGAAACACGAAGATGCTGT	0.413000													261	316					0	0	0.00361006	0	0
APOB	338	broad.mit.edu	37	2	21236046	21236046	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:21236046G>A	uc002red.2	-	25	4330	c.4202C>T	c.(4201-4203)TCC>TTC	p.S1401F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1401					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CACATTGTAGGAAAGCAGGTC	0.547000													179	263					0	0	0.00361006	0	0
OTOF	9381	broad.mit.edu	37	2	26698904	26698904	+	Nonsense_Mutation	SNP	T	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:26698904T>A	uc002rhk.2	-	24	2996	c.2869A>T	c.(2869-2871)AAG>TAG	p.K957*	OTOF_uc010yla.1_5'Flank|OTOF_uc002rhh.2_Nonsense_Mutation_p.K210*|OTOF_uc002rhi.2_Nonsense_Mutation_p.K267*|OTOF_uc002rhj.2_Nonsense_Mutation_p.K210*	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	957	Cytoplasmic (Potential).|C2 3.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AACGCCTGCTTCTCTGTGGGG	0.647000													14	18					0	0	0.00074312	0	0
UGGT1	56886	broad.mit.edu	37	2	128930207	128930207	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:128930207G>A	uc002tps.2	+	29	3343	c.3165G>A	c.(3163-3165)AAG>AAA	p.K1055K	UGGT1_uc002tpr.2_Silent_p.K1031K	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1	1055					'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						GTTTTGCTAAGGGTCCAATCG	0.383000													38	49					0	0	0.00128727	0	0
LRP2	4036	broad.mit.edu	37	2	170027071	170027071	+	Silent	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:170027071T>C	uc002ues.2	-	59	11583	c.11370A>G	c.(11368-11370)GAA>GAG	p.E3790E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	3790	LDL-receptor class A 32.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CACAGTCCCGTTCATCTGAGT	0.453000													58	61					0	0	0.00361006	0	0
TTN	7273	broad.mit.edu	37	2	179516450	179516450	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:179516450G>A	uc010zfg.1	-	160	32328	c.32104C>T	c.(32104-32106)CCA>TCA	p.P10702S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_5'Flank|TTN_uc002umx.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11629							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTTTCTGGGACAGGTTTC	0.408000													18	27					0	0	0.00278032	0	0
TTN	7273	broad.mit.edu	37	2	179655531	179655531	+	Silent	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:179655531T>C	uc010zfg.1	-	11	1928	c.1704A>G	c.(1702-1704)GTA>GTG	p.V568V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002unb.2_Silent_p.V568V|TTN_uc010frg.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	568							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGTGGCAACTACCACCATGG	0.388000													36	46					0	0	0.000953801	0	0
SPATS2L	26010	broad.mit.edu	37	2	201342669	201342669	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:201342669C>T	uc002uvn.3	+	13	1944	c.1592C>T	c.(1591-1593)TCA>TTA	p.S531L	SPATS2L_uc010fst.2_Missense_Mutation_p.S531L|SPATS2L_uc002uvo.3_Missense_Mutation_p.S471L|SPATS2L_uc002uvp.3_Missense_Mutation_p.S531L|SPATS2L_uc002uvq.3_Missense_Mutation_p.S462L|SPATS2L_uc002uvr.3_Missense_Mutation_p.S531L|SPATS2L_uc010zhc.1_Missense_Mutation_p.S561L	NM_015535	NP_056350	Q9NUQ6	SPS2L_HUMAN	SPATS2-like protein isoform a	531						cytoplasm|nucleolus				ovary(2)|pancreas(1)	3						GGTAGGGTTTCACAGTGCAAT	0.607000													16	17					0	0	0.000566183	0	0
OR6B2	389090	broad.mit.edu	37	2	240969565	240969565	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:240969565G>A	uc002vyr.2	-	2	328	c.282C>T	c.(280-282)TTC>TTT	p.F94F	OR6B2_uc010zoc.1_Silent_p.F94F	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		TGCACCCGACGAAAGAGATGC	0.572000													20	66					0	0	0.00188189	0	0
PASK	23178	broad.mit.edu	37	2	242063468	242063468	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr2:242063468G>A	uc002wao.1	-	11	2892	c.2800C>T	c.(2800-2802)CAC>TAC	p.H934Y	PASK_uc010zol.1_Missense_Mutation_p.H748Y|PASK_uc010zom.1_Missense_Mutation_p.H899Y|PASK_uc010fzl.1_Missense_Mutation_p.H934Y|PASK_uc010zon.1_Missense_Mutation_p.H715Y|PASK_uc002wap.2_Missense_Mutation_p.H477Y|PASK_uc002waq.2_Missense_Mutation_p.H934Y	NM_015148	NP_055963	Q96RG2	PASK_HUMAN	PAS domain containing serine/threonine kinase	934					regulation of transcription, DNA-dependent	Golgi apparatus	ATP binding|identical protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(4)|lung(1)|skin(1)	6		all_cancers(19;4.46e-39)|all_epithelial(40;1.34e-17)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00481)|Lung NSC(271;0.017)|Ovarian(221;0.0228)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;1.34e-31)|all cancers(36;1e-28)|OV - Ovarian serous cystadenocarcinoma(60;3.53e-14)|Kidney(56;4.31e-09)|KIRC - Kidney renal clear cell carcinoma(57;4.35e-08)|BRCA - Breast invasive adenocarcinoma(100;5.64e-06)|Lung(119;0.000596)|LUSC - Lung squamous cell carcinoma(224;0.00481)|Colorectal(34;0.014)|COAD - Colon adenocarcinoma(134;0.0968)		CGTTGGCTGTGGAGGAGGTCT	0.637000													16	27					0	0	0.00400662	0	0
KIF16B	55614	broad.mit.edu	37	20	16359843	16359843	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:16359843G>A	uc002wpg.1	-	19	2962	c.2804C>T	c.(2803-2805)CCT>CTT	p.P935L	KIF16B_uc002wpe.1_Missense_Mutation_p.P317L|KIF16B_uc002wpf.1_Missense_Mutation_p.P317L|KIF16B_uc010gch.1_Missense_Mutation_p.P935L|KIF16B_uc010gci.1_Missense_Mutation_p.P935L|KIF16B_uc010gcj.1_Missense_Mutation_p.P946L	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	935	Glu-rich.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						TAAGCTGAGAGGGCCTCTGTC	0.433000													39	55					0	0	0.00111076	0	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:29628283G>C	uc010ztl.1	+	3	227	c.195G>C	c.(193-195)GGG>GGC	p.G65G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Silent_p.G17G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGAAGCAGGGGACATAGAAG	0.378000													3	53					0	0	0.00307968	0	0
EPB41L1	2036	broad.mit.edu	37	20	34797622	34797622	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:34797622C>T	uc002xfb.2	+	15	2052	c.1881C>T	c.(1879-1881)GAC>GAT	p.D627D	EPB41L1_uc002xeu.2_Silent_p.D553D|EPB41L1_uc010zvo.1_Silent_p.D627D|EPB41L1_uc002xev.2_Silent_p.D627D|EPB41L1_uc002xew.2_Silent_p.D518D|EPB41L1_uc002xex.2_Intron|EPB41L1_uc002xey.2_Intron|EPB41L1_uc002xez.2_Silent_p.D553D|EPB41L1_uc010gfq.2_Silent_p.D726D	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	627					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					TCATTGGTGACTACCATGGCA	0.602000													14	15					0	0	0.00316338	0	0
DLGAP4	22839	broad.mit.edu	37	20	35060232	35060232	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:35060232G>A	uc002xff.2	+	3	547	c.112G>A	c.(112-114)GAG>AAG	p.E38K	DLGAP4_uc010zvp.1_Missense_Mutation_p.E38K	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	38					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				GTCGCCCACGGAGGCCTTCGC	0.701000													16	24					0	0	0.000958276	0	0
CHD6	84181	broad.mit.edu	37	20	40161876	40161876	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:40161876C>T	uc002xka.1	-	3	545	c.367G>A	c.(367-369)GAA>AAA	p.E123K	CHD6_uc002xkd.2_Missense_Mutation_p.E101K|CHD6_uc002xkc.2_Missense_Mutation_p.E158K	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	123	Lys-rich.				chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TCTTTCGGTTCTCGTTTCCTC	0.527000													130	218					0	0	0.00361006	0	0
TOX2	84969	broad.mit.edu	37	20	42679948	42679948	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:42679948C>T	uc002xlf.3	+	4	458	c.441C>T	c.(439-441)ATC>ATT	p.I147I	TOX2_uc010ggo.2_Silent_p.I138I|TOX2_uc002xle.3_Silent_p.I96I|TOX2_uc010ggp.2_Silent_p.I96I|TOX2_uc002xlg.2_Silent_p.I96I|TOX2_uc010zwk.1_Silent_p.I16I	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			TCTCTTAGATCCAGGAGATGG	0.607000													22	27					0	0	0.00278032	0	0
CDH22	64405	broad.mit.edu	37	20	44869687	44869687	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:44869687G>A	uc002xrm.2	-	2	866	c.465C>T	c.(463-465)ATC>ATT	p.I155I	CDH22_uc010ghk.1_Silent_p.I155I	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	155	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				GCACCTTGATGATGAACTCCG	0.642000													30	45					0	0	0.00283554	0	0
PTPN1	5770	broad.mit.edu	37	20	49195139	49195139	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:49195139C>T	uc002xvl.2	+	6	849	c.675C>T	c.(673-675)TTC>TTT	p.F225F	PTPN1_uc010zys.1_Silent_p.F152F	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	225	Tyrosine-protein phosphatase.				blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	CTGGAACCTTCTGTCTGGCTG	0.572000													21	31					0	0	0.00152264	0	0
ZNF831	128611	broad.mit.edu	37	20	57781968	57781968	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:57781968G>A	uc002yan.2	+	3	3884	c.3884G>A	c.(3883-3885)GGG>GAG	p.G1295E		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1295						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGGTACAAAGGGAATTTCTTG	0.542000													70	118					0	0	0.00361006	0	0
ZNF831	128611	broad.mit.edu	37	20	57828962	57828962	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr20:57828962C>T	uc002yan.2	+	5	4198	c.4198C>T	c.(4198-4200)CCA>TCA	p.P1400S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1400						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GGATATTTCTCCATCTGCTGG	0.453000													31	49					0	0	0.00428921	0	0
SAMSN1	64092	broad.mit.edu	37	21	15889309	15889309	+	Silent	SNP	A	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr21:15889309A>G	uc002yju.1	-	3	265	c.183T>C	c.(181-183)AAT>AAC	p.N61N	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Silent_p.N129N	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	61					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		CGCCTCCATTATTTGAAGTTT	0.333000													23	26					0	0	0.00278032	0	0
IGSF5	150084	broad.mit.edu	37	21	41163987	41163987	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr21:41163987G>A	uc002yyo.2	+	7	1112	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	337	Cytoplasmic (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				AAGTGGAAATGAAAACTCCGG	0.398000													6	14					0	0	0.00307968	0	0
DSCAM	1826	broad.mit.edu	37	21	41648035	41648035	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr21:41648035A>T	uc002yyq.1	-	11	2797	c.2345T>A	c.(2344-2346)CTC>CAC	p.L782H	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	782	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTTAACCGTGAGGTACATGGA	0.468000													37	56					0	0	0.00111076	0	0
OR11H1	81061	broad.mit.edu	37	22	16449062	16449062	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr22:16449062C>T	uc011agd.1	-	1	743	c.743G>A	c.(742-744)GGG>GAG	p.G248E		NM_001005239	NP_001005239	Q8NG94	O11H1_HUMAN	olfactory receptor, family 11, subfamily H,	248	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.208)		Kidney(3;0.00216)|KIRC - Kidney renal clear cell carcinoma(3;0.00244)|Lung(27;0.0724)|COAD - Colon adenocarcinoma(3;0.211)		CTTATGTCTCCCAGTGCTTGA	0.433000													96	142					0	0	0.00361006	0	0
Unknown	0	broad.mit.edu	37	22	18845963	18845963	+	RNA	SNP	C	T	T	rs144351257	by1000genomes	TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr22:18845963C>T	uc002zoe.2	+	5		c.2325C>T			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		GATCTCATCGCGGACACCACT	0.517000													5	23					0	0	0.000442599	0	0
PI4KAP1	728233	broad.mit.edu	37	22	20386745	20386745	+	RNA	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr22:20386745T>C	uc010gse.1	-	11		c.1657A>G			PI4KAP1_uc010gsf.1_RNA|PI4KAP1_uc010gsg.1_Intron|PI4KAP1_uc010gsh.1_RNA|PI4KAP1_uc002zsc.3_Intron|PI4KAP1_uc011ahn.1_Intron					Homo sapiens cDNA FLJ11279 fis, clone PLACE1009444, highly similar to PHOSPHATIDYLINOSITOL 4-KINASE ALPHA (EC 2.7.1.67).												0						TGGTCTGTTTTGAGGAGTGGA	0.577000													4	9					0	0	0.00307968	0	0
LOC96610	96610	broad.mit.edu	37	22	22749728	22749728	+	RNA	SNP	A	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr22:22749728A>C	uc011aim.1	+	49		c.5725A>C								Parts of antibodies, mostly variable regions.												0						CCCGGTTCTCAGGCTCCCTCC	0.552000													40	41					0	0	0.00222228	0	0
SOX10	6663	broad.mit.edu	37	22	38369715	38369715	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr22:38369715G>A	uc003aun.1	-	4	1466	c.1188C>T	c.(1186-1188)TCC>TCT	p.S396S	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Silent_p.S396S	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	396						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					ACTGGGGGCGGGAGATGGAGG	0.632000													32	28					0	0	0.00178596	0	0
CACNA1I	8911	broad.mit.edu	37	22	40056382	40056382	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr22:40056382C>T	uc003ayc.2	+	15	2638	c.2638C>T	c.(2638-2640)CAG>TAG	p.Q880*	CACNA1I_uc003ayd.2_Nonsense_Mutation_p.Q845*|CACNA1I_uc003aye.2_Nonsense_Mutation_p.Q795*|CACNA1I_uc003ayf.2_Nonsense_Mutation_p.Q760*	NM_021096	NP_066919	Q9P0X4	CAC1I_HUMAN	calcium channel, voltage-dependent, T type,	880	Cytoplasmic (Potential).				axon guidance|signal transduction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity|protein binding			breast(1)|central_nervous_system(1)	2	Melanoma(58;0.0749)				Flunarizine(DB04841)|Paramethadione(DB00617)|Verapamil(DB00661)	GGACGAGGACCAGAGCTCATC	0.577000													14	17					0	0	0.000566183	0	0
ZC3H7B	23264	broad.mit.edu	37	22	41735068	41735068	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr22:41735068T>A	uc003azw.2	+	9	905	c.689T>A	c.(688-690)TTC>TAC	p.F230Y	ZC3H7B_uc010gyl.1_Intron	NM_017590	NP_060060	Q9UGR2	Z3H7B_HUMAN	zinc finger CCCH-type containing 7B	246					interspecies interaction between organisms	nucleus	nucleic acid binding|protein binding|zinc ion binding			central_nervous_system(1)	1						ATGCCCCTGTTCCCTCACGTT	0.662000													59	77					0	0	0.00361006	0	0
WNT7A	7476	broad.mit.edu	37	3	13896034	13896035	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:13896034_13896035GG>AA	uc003bye.1	-	3	869_870	c.564_565CC>TT	c.(562-567)GGCCGA>GGTTGA	p.R189*		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	189					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						CCTACCTTTCGGCCTGCCTCGT	0.441000													122	131					0	0	6.4e-05	0	0
DAZL	1618	broad.mit.edu	37	3	16639634	16639634	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:16639634C>T	uc003cbb.2	-	3	496	c.202G>A	c.(202-204)GAA>AAA	p.E68K	DAZL_uc003cba.2_Missense_Mutation_p.E88K	NM_001351	NP_001342	Q92904	DAZL_HUMAN	deleted in azoospermia-like	68	RRM.				germ cell development|multicellular organismal development|positive regulation of translational initiation|spermatogenesis	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding|translation activator activity				0						ATCTTCACTTCTTTCACTGAA	0.343000													37	60					0	0	0.00222228	0	0
CLASP2	23122	broad.mit.edu	37	3	33614720	33614720	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:33614720T>C	uc003cfu.2	-	25	2935	c.2581A>G	c.(2581-2583)ATG>GTG	p.M861V	CLASP2_uc003cfs.2_Missense_Mutation_p.M69V|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA|CLASP2_uc011axt.1_Missense_Mutation_p.M462V	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	870										ovary(3)|central_nervous_system(1)	4						GTCTGCCTCATATATGTAGGA	0.428000													153	183					0	0	0.00361006	0	0
ARPP21	10777	broad.mit.edu	37	3	35750473	35750473	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:35750473C>T	uc003cgb.2	+	11	1072	c.808C>T	c.(808-810)CAT>TAT	p.H270Y	ARPP21_uc003cga.2_Intron|ARPP21_uc011axy.1_Intron|ARPP21_uc003cgf.2_Intron	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	270						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AAACAGAATGCATCCATTTAG	0.373000													5	21					0	0	0.00116845	0	0
GOLGA4	2803	broad.mit.edu	37	3	37340796	37340796	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:37340796G>A	uc003cgv.2	+	9	1324	c.1020G>A	c.(1018-1020)GAG>GAA	p.E340E	GOLGA4_uc010hgr.1_Intron|GOLGA4_uc003cgw.2_Silent_p.E362E|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Silent_p.E221E	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	340	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						ATATGGCCGAGAAGACTAAAC	0.289000													18	20					0	0	0.00074312	0	0
DLEC1	9940	broad.mit.edu	37	3	38101312	38101312	+	Silent	SNP	C	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:38101312C>A	uc003cho.1	+	3	663	c.642C>A	c.(640-642)ACC>ACA	p.T214T	DLEC1_uc003chp.1_Silent_p.T214T|DLEC1_uc010hgv.1_Silent_p.T214T|DLEC1_uc010hgw.1_5'Flank|DLEC1_uc003chq.1_5'Flank	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	214					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		ATTACTACACCGATACAGTGC	0.493000													6	244					0.00198382	0.0052588	0.00198382	1	0
SCN10A	6336	broad.mit.edu	37	3	38805031	38805031	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:38805031A>G	uc003ciq.2	-	5	656	c.656T>C	c.(655-657)GTT>GCT	p.V219A		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	219	I.|Helical; Voltage-sensor; Name=S4 of repeat I; (Potential).				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGCTCTAAGAACTCTGAATGT	0.378000													48	75					0	0	0.00361006	0	0
ENTPD3	956	broad.mit.edu	37	3	40456284	40456284	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:40456284G>A	uc003ckd.3	+	6	642	c.550G>A	c.(550-552)GTA>ATA	p.V184I	ENTPD3_uc010hhy.2_Missense_Mutation_p.V184I|uc003cke.3_Intron	NM_001248	NP_001239	O75355	ENTP3_HUMAN	ectonucleoside triphosphate diphosphohydrolase	184	Extracellular (Potential).					integral to membrane	ATP binding|hydrolase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0605)|Kidney(284;0.0758)		AGAAGAAGGGGTATATGGATG	0.418000													84	123					0	0	0.00361006	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54913106	54913106	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:54913106T>A	uc003dhf.2	+	19	1820	c.1772T>A	c.(1771-1773)GTG>GAG	p.V591E	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.V497E|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.V325E|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	591	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AAGAAGACAGTGGACAAAGGG	0.348000													21	17					0	0	0.00152264	0	0
ERC2	26059	broad.mit.edu	37	3	56044578	56044578	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:56044578C>T	uc003dhr.1	-	9	2075	c.1819G>A	c.(1819-1821)GAT>AAT	p.D607N	ERC2_uc003dht.1_Missense_Mutation_p.D78N	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	607	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCCCGATCATCTCTTTCTCGC	0.403000													56	97					0	0	0.00361006	0	0
SLC9A10	285335	broad.mit.edu	37	3	111988825	111988825	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:111988825A>G	uc003dyu.2	-	7	935	c.713T>C	c.(712-714)TTT>TCT	p.F238S	SLC9A10_uc011bhu.1_Intron|SLC9A10_uc010hqc.2_Missense_Mutation_p.F238S	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	238					cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						ATCATCACCAAAAACAGTTGA	0.323000													73	90					0	0	0.00361006	0	0
GOLGB1	2804	broad.mit.edu	37	3	121416835	121416835	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:121416835C>T	uc003eei.3	-	13	2646	c.2520G>A	c.(2518-2520)CTG>CTA	p.L840L	GOLGB1_uc010hrc.2_Silent_p.L845L|GOLGB1_uc003eej.3_Silent_p.L806L|GOLGB1_uc011bjm.1_Silent_p.L726L|GOLGB1_uc010hrd.1_Silent_p.L804L	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	840	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CCTTATTTTGCAGCTGGCTTT	0.433000													64	83					0	0	0.00361006	0	0
PLXND1	23129	broad.mit.edu	37	3	129288764	129288764	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:129288764G>C	uc003emx.2	-	20	3887	c.3787C>G	c.(3787-3789)CTG>GTG	p.L1263V	PLXND1_uc011blb.1_5'Flank	NM_015103	NP_055918	Q9Y4D7	PLXD1_HUMAN	plexin D1 precursor	1263	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				large_intestine(1)	1						CCCAGCTGCAGTGTGGCGATG	0.517000													25	31					0	0	0.00106085	0	0
CLSTN2	64084	broad.mit.edu	37	3	140178487	140178487	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:140178487C>T	uc003etn.2	+	7	1288	c.1098C>T	c.(1096-1098)GTC>GTT	p.V366V	CLSTN2_uc003etm.2_Silent_p.V366V	NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	366	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GTGCCAAAGTCCCCGATGGGA	0.572000										HNSCC(16;0.037)			20	18					0	0	0.00121646	0	0
TRIM42	287015	broad.mit.edu	37	3	140401581	140401581	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:140401581G>A	uc003eto.1	+	2	810	c.619G>A	c.(619-621)GAG>AAG	p.E207K		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	207						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						GCAGCTGCCCGAGAACTACCT	0.617000													36	48					0	0	0.00375469	0	0
ZIC4	84107	broad.mit.edu	37	3	147120535	147120535	+	Missense_Mutation	SNP	C	T	T	rs148365070	by1000genomes	TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:147120535C>T	uc003ewd.1	-	2	323	c.50G>A	c.(49-51)CGA>CAA	p.R17Q	ZIC4_uc011bno.1_Missense_Mutation_p.R67Q	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	17						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						AAGAGTGTTTCGGTAAAGCCG	0.323000													56	85					0	0	0.00361006	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169550902	169550902	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:169550902T>G	uc003fgb.2	+	4	1461	c.1461T>G	c.(1459-1461)TGT>TGG	p.C487W		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	487	LRR 20.										0						AAGAAGTGTGTGCTGAAGGCA	0.418000													17	22					0	0	0.000566183	0	0
TNIK	23043	broad.mit.edu	37	3	170805189	170805189	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:170805189G>A	uc003fhh.2	-	24	3173	c.2828C>T	c.(2827-2829)CCG>CTG	p.P943L	TNIK_uc003fhi.2_Missense_Mutation_p.P888L|TNIK_uc003fhj.2_Missense_Mutation_p.P914L|TNIK_uc003fhk.2_Missense_Mutation_p.P935L|TNIK_uc003fhl.2_Missense_Mutation_p.P859L|TNIK_uc003fhm.2_Missense_Mutation_p.P880L|TNIK_uc003fhn.2_Missense_Mutation_p.P906L|TNIK_uc003fho.2_Missense_Mutation_p.P851L|TNIK_uc003fhg.2_Missense_Mutation_p.P121L	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	943	Mediates interaction with NEDD4.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			TCCCTCAGTCGGGGTTCCAGC	0.582000													44	59					0	0	0.0025221	0	0
PIK3CA	5290	broad.mit.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	T	T	rs121913279		TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr3:178952085A>T	uc003fjk.2	+	21	3297	c.3140A>T	c.(3139-3141)CAT>CTT	p.H1047L		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	1047	PI3K/PI4K.		H -> L (in cancer).|H -> R (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; requires binding to p85 regulatory subunit to induce cellular transformation but not interaction with RAS; may mimic the conformatitonal change triggered by the interaction with RAS; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells; increases lipid kinase activity; may alter the interaction of the PI3K/ PI4K kinase domain with the cell membrane).|H -> Y (in cancer).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.H1047R(1269)|p.H1047L(152)|p.H1047Y(31)|p.H1047Q(3)|p.H1047T(1)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			AATGATGCACATCATGGTGGC	0.378000	H1047R(BT20_BREAST)|H1047R(NCIH1048_LUNG)|H1047R(MCAS_OVARY)|H1047R(HCC1954_BREAST)|H1047R(RKO_LARGE_INTESTINE)|H1047L(EFM19_BREAST)|H1047R(CAL33_UPPER_AERODIGESTIVE_TRACT)|H1047R(CAL29_URINARY_TRACT)|H1047R(DETROIT562_UPPER_AERODIGESTIVE_TRACT)|H1047R(LS180_LARGE_INTESTINE)|H1047R(T47D_BREAST)|H1047R(HCT116_LARGE_INTESTINE)|H1047R(HSC2_UPPER_AERODIGESTIVE_TRACT)|H1047R(SKOV3_OVARY)|H1047R(MDAMB453_BREAST)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			26	33					0	0	0.000720815	0	0
TMEM175	84286	broad.mit.edu	37	4	952010	952010	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:952010G>A	uc003gbq.2	+	11	1339	c.1241G>A	c.(1240-1242)CGG>CAG	p.R414Q	TMEM175_uc003gbr.2_Missense_Mutation_p.R332Q|TMEM175_uc003gbu.2_Missense_Mutation_p.R332Q|TMEM175_uc003gbs.2_Missense_Mutation_p.R297Q|TMEM175_uc003gbt.2_Missense_Mutation_p.R297Q|TMEM175_uc003gbv.2_Missense_Mutation_p.R297Q|TMEM175_uc010ibm.2_Missense_Mutation_p.R230Q	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	414						integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			TTTGGCGGCCGGGAGCATGTG	0.652000													9	19					0	0	0.000442599	0	0
HTT	3064	broad.mit.edu	37	4	3158844	3158844	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:3158844C>T	uc011bvq.1	+	29	3822	c.3677C>T	c.(3676-3678)TCC>TTC	p.S1226F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1224					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		ACAAGTAAATCCTCATCACTG	0.388000													23	44					0	0	0.00188189	0	0
WFS1	7466	broad.mit.edu	37	4	6303014	6303014	+	Missense_Mutation	SNP	G	A	A	rs71524358		TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:6303014G>A	uc003giy.2	+	8	1658	c.1492G>A	c.(1492-1494)GTC>ATC	p.V498I	WFS1_uc003gix.2_Missense_Mutation_p.V498I|WFS1_uc003giz.2_Missense_Mutation_p.V316I	NM_001145853	NP_001139325	O76024	WFS1_HUMAN	wolframin	498	Helical; (Potential).				endoplasmic reticulum calcium ion homeostasis|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|glucose homeostasis|kidney development|negative regulation of neuron apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|polyubiquitinated misfolded protein transport|positive regulation of calcium ion transport|positive regulation of growth|positive regulation of protein ubiquitination|positive regulation of proteolysis|protein stabilization|renal water homeostasis|sensory perception of sound|visual perception	dendrite|integral to endoplasmic reticulum membrane	activating transcription factor binding|ATPase binding|transporter activity|ubiquitin protein ligase binding			central_nervous_system(2)	2				Colorectal(103;0.0512)		CCACCTGGTCGTCCTCAACGT	0.592000													243	311					0	0	0.00361006	0	0
ATP8A1	10396	broad.mit.edu	37	4	42466710	42466710	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:42466710G>A	uc003gwr.2	-	27	2848	c.2616C>T	c.(2614-2616)ATC>ATT	p.I872I	ATP8A1_uc003gwq.2_Silent_p.I98I|ATP8A1_uc003gws.2_Silent_p.I857I	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	872	Helical; (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	CTATTACCTCGATAATATAGA	0.299000													27	42					0	0	0.00395357	0	0
GABRB1	2560	broad.mit.edu	37	4	47322179	47322179	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:47322179G>A	uc003gxh.2	+	5	871	c.497G>A	c.(496-498)CGA>CAA	p.R166Q	GABRB1_uc011bze.1_Missense_Mutation_p.R96Q	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	166	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	ATGGATCTTCGAAGATATCCA	0.418000													30	35					0	0	0.00428921	0	0
PDGFRA	5156	broad.mit.edu	37	4	55144155	55144155	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:55144155G>A	uc003han.3	+	14	2315	c.1984G>A	c.(1984-1986)GGA>AGA	p.G662R	PDGFRA_uc003haa.2_Missense_Mutation_p.G422R|PDGFRA_uc010igq.1_Missense_Mutation_p.G556R|PDGFRA_uc003ham.2_RNA|PDGFRA_uc003hao.1_Missense_Mutation_p.G41R	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	662	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	AAACTTGCTGGGAGCCTGCAC	0.478000			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			18	27					0	0	0.000566183	0	0
LPHN3	23284	broad.mit.edu	37	4	62813869	62813869	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:62813869C>T	uc010ihh.2	+	14	2649	c.2476C>T	c.(2476-2478)CGT>TGT	p.R826C	LPHN3_uc003hcq.3_Missense_Mutation_p.R826C|LPHN3_uc003hct.2_Missense_Mutation_p.R219C	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	813	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						CTACTCCAAGCGTACAATGAC	0.388000													20	20					0	0	0.000958276	0	0
NDST3	9348	broad.mit.edu	37	4	118975766	118975766	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:118975766T>A	uc003ibx.2	+	2	1104	c.701T>A	c.(700-702)ATA>AAA	p.I234K	NDST3_uc011cgf.1_Missense_Mutation_p.I234K|NDST3_uc003ibw.2_Missense_Mutation_p.I234K	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	234	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CAACCAGTAATATTTGCCAAA	0.388000													68	62					0	0	0.00361006	0	0
FAT4	79633	broad.mit.edu	37	4	126412493	126412493	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:126412493C>T	uc003ifj.3	+	17	14516	c.14516C>T	c.(14515-14517)TCT>TTT	p.S4839F	FAT4_uc011cgp.1_Missense_Mutation_p.S3080F|FAT4_uc003ifi.1_Missense_Mutation_p.S2316F	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4839	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCAGAATCCTCTTCTGATAGT	0.468000													29	26					0	0	0.00106085	0	0
PLRG1	5356	broad.mit.edu	37	4	155465644	155465644	+	Missense_Mutation	SNP	G	A	A	rs114473975	byFrequency	TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:155465644G>A	uc003iny.2	-	7	610	c.547C>T	c.(547-549)CCT>TCT	p.P183S	PLRG1_uc003inz.2_Missense_Mutation_p.P174S|PLRG1_uc011cil.1_Missense_Mutation_p.P22S	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	183						catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				GGCATTGTAGGGGCTTTTTTA	0.403000													30	46					0	0	0.0024448	0	0
TRIM60	166655	broad.mit.edu	37	4	165962255	165962255	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:165962255G>A	uc003iqy.1	+	3	1201	c.1031G>A	c.(1030-1032)AGA>AAA	p.R344K	TRIM60_uc010iqx.1_Missense_Mutation_p.R344K	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	344	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		GGCTCTCAGAGATTTAGTTCT	0.423000													44	71					0	0	0.00361006	0	0
TLL1	7092	broad.mit.edu	37	4	166929145	166929145	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:166929145G>A	uc003irh.1	+	7	1509	c.862G>A	c.(862-864)GGA>AGA	p.G288R	TLL1_uc011cjn.1_Missense_Mutation_p.G288R|TLL1_uc011cjo.1_Missense_Mutation_p.G112R	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	288	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AAACTCACTTGGAGAAAGATA	0.393000													27	45					0	0	0.00127121	0	0
DDX60	55601	broad.mit.edu	37	4	169172186	169172186	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:169172186C>T	uc003irp.2	-	28	4069	c.3777G>A	c.(3775-3777)AGG>AGA	p.R1259R		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1259	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		ATCCAATACCCCTTTCTGCCA	0.338000													18	32					0	0	0.00188189	0	0
ODZ3	55714	broad.mit.edu	37	4	183673100	183673100	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:183673100G>A	uc003ivd.1	+	19	3814	c.3777G>A	c.(3775-3777)GGG>GGA	p.G1259G	ODZ3_uc003ive.1_Silent_p.G672G	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1259	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TCGTCGCAGGGACAGGGGAGC	0.537000													28	9					0	0	0.000878237	0	0
ENPP6	133121	broad.mit.edu	37	4	185038027	185038028	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr4:185038027_185038028GG>AA	uc003iwc.2	-	5	978_979	c.836_837CC>TT	c.(835-837)GCC>GTT	p.A279V		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	279	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		GTTTCCCAGGGGCCGGCCAAAG	0.554000													28	17					0	0	6.4e-05	0	0
LPCAT1	79888	broad.mit.edu	37	5	1463832	1463832	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:1463832G>A	uc003jcm.2	-	14	1656	c.1539C>T	c.(1537-1539)TTC>TTT	p.F513F	LPCAT1_uc003jcl.2_Silent_p.F87F	NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	513	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		AATCGGCACAGAAGCCGTTTG	0.582000													24	37					0	0	0.00278032	0	0
LPCAT1	79888	broad.mit.edu	37	5	1470956	1470956	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:1470956G>C	uc003jcm.2	-	12	1380	c.1263C>G	c.(1261-1263)ATC>ATG	p.I421M		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	421	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		AAGCCAGCTGGATGGTGTCCA	0.607000													38	44					0	0	0.00321405	0	0
DNAH5	1767	broad.mit.edu	37	5	13700768	13700768	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:13700768C>T	uc003jfd.2	-	78	13746	c.13704G>A	c.(13702-13704)AGG>AGA	p.R4568R	DNAH5_uc003jfc.2_Silent_p.R736R	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4568					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGCATAAATCCTTATGACAG	0.383000									Kartagener_syndrome				46	75					0	0	0.00361006	0	0
DNAH5	1767	broad.mit.edu	37	5	13753548	13753548	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:13753548G>A	uc003jfd.2	-	63	10708	c.10666C>T	c.(10666-10668)CCA>TCA	p.P3556S	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3556					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTCCAAATGGAATTTTCCGG	0.403000									Kartagener_syndrome				49	73					0	0	0.00361006	0	0
TRIO	7204	broad.mit.edu	37	5	14471535	14471535	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:14471535G>A	uc003jff.2	+	38	5878	c.5872G>A	c.(5872-5874)GAG>AAG	p.E1958K	TRIO_uc003jfg.2_RNA|TRIO_uc003jfh.1_Missense_Mutation_p.E1607K	NM_007118	NP_009049	O75962	TRIO_HUMAN	triple functional domain (PTPRF interacting)	1958					apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine phosphatase signaling pathway	cytosol	ATP binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			skin(4)|central_nervous_system(3)|ovary(3)|large_intestine(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|kidney(1)	18	Lung NSC(4;0.000742)					GCCCATTGATGAGATGGAAGA	0.468000													24	30					0	0	0.00278032	0	0
AGXT2	64902	broad.mit.edu	37	5	35014170	35014170	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:35014170C>T	uc003jjf.2	-	10	1097	c.1018G>A	c.(1018-1020)GAT>AAT	p.D340N	AGXT2_uc003jje.1_5'UTR|AGXT2_uc011com.1_Intron	NM_031900	NP_114106	Q9BYV1	AGT2_HUMAN	alanine-glyoxylate aminotransferase 2 precursor	340					glyoxylate metabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	mitochondrial matrix	(R)-3-amino-2-methylpropionate-pyruvate transaminase activity|alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(3)|skin(1)	4	all_lung(31;4.52e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)	GBM - Glioblastoma multiforme(108;0.181)	Glycine(DB00145)|L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)	GGCAGGACATCGTGGGTTTGG	0.502000													41	50					0	0	0.00148497	0	0
SLC1A3	6507	broad.mit.edu	37	5	36679745	36679745	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:36679745A>T	uc003jkj.3	+	7	1353	c.877A>T	c.(877-879)ATT>TTT	p.I293F	SLC1A3_uc011cox.1_Missense_Mutation_p.I186F|SLC1A3_uc010iuy.2_Missense_Mutation_p.I293F	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	293	Helical; (Potential).				D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	CCCCGTGGGTATTCTCTTCCT	0.507000													79	94					0	0	0.00361006	0	0
PRR16	51334	broad.mit.edu	37	5	120021815	120021815	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:120021815A>C	uc003ksq.2	+	2	489	c.326A>C	c.(325-327)CAC>CCC	p.H109P	PRR16_uc003ksp.2_Missense_Mutation_p.H86P|PRR16_uc003ksr.2_Missense_Mutation_p.H39P	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	109	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		CCCCCAGCACACCCGTCTGCT	0.527000													35	62					0	0	0.00327116	0	0
PCDH1	5097	broad.mit.edu	37	5	141248874	141248874	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:141248874C>T	uc003llq.2	-	2	280	c.163G>A	c.(163-165)GGC>AGC	p.G55S	PCDH1_uc003llp.2_Missense_Mutation_p.G55S|PCDH1_uc011dbf.1_Missense_Mutation_p.G33S	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	55					cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		GTGGCGTGGCCTGGGGATGGA	0.642000													8	1					0	0	0.000274275	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147019213	147019213	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:147019213G>A	uc003loq.1	-	10	1894	c.1512C>T	c.(1510-1512)GAC>GAT	p.D504D	JAKMIP2_uc011dbx.1_Silent_p.D462D|JAKMIP2_uc003lor.1_Silent_p.D504D|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Silent_p.D504D	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	504	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCGTTCAGCGTCGATGATGC	0.443000													197	33					0	0	0.00361006	0	0
STK10	6793	broad.mit.edu	37	5	171520823	171520823	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr5:171520823A>C	uc003mbo.1	-	9	1447	c.1147T>G	c.(1147-1149)TCT>GCT	p.S383A		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	383							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTGTCCCCAGAGGGCTGGCTG	0.642000													27	45					0	0	0.000720815	0	0
ATXN1	6310	broad.mit.edu	37	6	16327897	16327897	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:16327897C>A	uc003nbt.2	-	8	1616	c.645G>T	c.(643-645)CAG>CAT	p.Q215H	ATXN1_uc010jpi.2_Missense_Mutation_p.Q215H|ATXN1_uc010jpj.1_Intron	NM_000332	NP_000323	P54253	ATX1_HUMAN	ataxin 1	215	Poly-Gln.				cell death|negative regulation of transcription, DNA-dependent|nuclear export|RNA processing	cytoplasm|nuclear inclusion body|nuclear matrix|nucleoplasm	identical protein binding|poly(G) RNA binding|poly(U) RNA binding|protein binding|protein C-terminus binding|protein self-association			skin(3)|central_nervous_system(1)	4	Breast(50;0.063)|Ovarian(93;0.0733)	all_hematologic(90;0.000682)|Ovarian(999;0.00973)				gctgctgctgctgctgctgct	0.378000													5	14					1.23904e-05	3.30693e-05	0.000602214	1	0
GNL1	2794	broad.mit.edu	37	6	30514975	30514975	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:30514975G>A	uc003nqh.2	-	10	2383	c.1355C>T	c.(1354-1356)CCC>CTC	p.P452L	GNL1_uc011dmi.1_Missense_Mutation_p.P249L|GNL1_uc011dmj.1_Missense_Mutation_p.P450L|GNL1_uc011dmk.1_Missense_Mutation_p.P107L	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	452					response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						GGCCTGCACGGGAATTCGGGA	0.617000													45	62					0	0	0.0025221	0	0
PRRT1	80863	broad.mit.edu	37	6	32118198	32118198	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:32118198G>A	uc003nzt.2	-	2	621	c.505C>T	c.(505-507)CCC>TCC	p.P169S	PRRT1_uc003nzs.2_Missense_Mutation_p.P210S|PRRT1_uc003nzu.2_Missense_Mutation_p.P61L	NM_030651	NP_085154	Q99946	PRRT1_HUMAN	NG5 protein	169					response to biotic stimulus	integral to membrane				breast(1)	1						AGCTGCAGGGGGTATCCGGGC	0.677000													11	20					0	0	0.00244969	0	0
LHFPL5	222662	broad.mit.edu	37	6	35773635	35773635	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:35773635G>A	uc003olg.1	+	1	565	c.188G>A	c.(187-189)GGC>GAC	p.G63D		NM_182548	NP_872354	Q8TAF8	TMHS_HUMAN	lipoma HMGIC fusion partner-like 5	63	Helical; (Potential).					integral to membrane				skin(1)	1						GGCTACTTCGGCCTTTTCTCC	0.592000													71	82					0	0	0.00361006	0	0
XPO5	57510	broad.mit.edu	37	6	43517301	43517301	+	Silent	SNP	C	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:43517301C>G	uc003ovp.2	-	17	1996	c.1785G>C	c.(1783-1785)CGG>CGC	p.R595R		NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	595	Necessary for interaction with ILF3.				gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			TCCTCACTGCCCGGGTTCTGG	0.498000													59	57					0	0	0.00361006	0	0
BMP5	653	broad.mit.edu	37	6	55638912	55638912	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:55638912C>T	uc003pcq.2	-	4	1674	c.962G>A	c.(961-963)CGA>CAA	p.R321Q	BMP5_uc011dxf.1_Missense_Mutation_p.R321Q	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	321					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TTGATTTTTTCGTTTGTTGGC	0.478000													55	63					0	0	0.00361006	0	0
EEF1A1	1915	broad.mit.edu	37	6	74229640	74229640	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:74229640C>T	uc003phi.2	-	1	147	c.110G>A	c.(109-111)AGA>AAA	p.R37K	EEF1A1_uc003phd.2_5'Flank|EEF1A1_uc003phe.2_Missense_Mutation_p.R37K|EEF1A1_uc003phf.2_Missense_Mutation_p.R37K|EEF1A1_uc003phg.2_Missense_Mutation_p.R37K|EEF1A1_uc003phh.2_5'UTR|EEF1A1_uc003phj.2_Missense_Mutation_p.R37K|EEF1A1_uc003phk.2_Missense_Mutation_p.R37K|EEF1A1_uc003phl.2_Missense_Mutation_p.R37K|EEF1A1_uc003phm.1_RNA	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	37						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						TTCAATGGTTCTTTTGTCGAT	0.408000													6	51					0	0	0.00116845	0	0
IMPG1	3617	broad.mit.edu	37	6	76712713	76712713	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:76712713C>T	uc003pik.1	-	12	1343	c.1213G>A	c.(1213-1215)GAT>AAT	p.D405N		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	405					visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				AAAGTAGCATCCTGAAGAATG	0.413000													22	13					0	0	0.00229938	0	0
AIM1	202	broad.mit.edu	37	6	107006410	107006410	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:107006410G>A	uc003prh.2	+	16	5028	c.4541G>A	c.(4540-4542)GGA>GAA	p.G1514E	AIM1_uc003pri.2_Missense_Mutation_p.G318E	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1514	Beta/gamma crystallin 'Greek key' 11.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		GACTTCAAAGGAAAAAAGATT	0.353000													14	6					0	0	0.00185496	0	0
WASF1	8936	broad.mit.edu	37	6	110429744	110429744	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:110429744G>A	uc003ptv.1	-	6	1246	c.409C>T	c.(409-411)CTC>TTC	p.L137F	WASF1_uc003ptw.1_Missense_Mutation_p.L137F|WASF1_uc003ptx.1_Missense_Mutation_p.L137F|WASF1_uc003pty.1_Missense_Mutation_p.L137F|WASF1_uc003ptz.1_Missense_Mutation_p.L137F	NM_003931	NP_003922	Q92558	WASF1_HUMAN	Wiskott-Aldrich syndrome protein family member	137					actin filament polymerization|cellular component movement	actin cytoskeleton	actin binding				0		all_cancers(87;1.18e-05)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00159)|Colorectal(196;0.0488)		OV - Ovarian serous cystadenocarcinoma(136;0.0364)|Epithelial(106;0.051)|all cancers(137;0.0687)		TAAGGAGTGAGTATATTGAGA	0.378000													27	20					0	0	0.00106085	0	0
ROS1	6098	broad.mit.edu	37	6	117629985	117629985	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:117629985C>T	uc003pxp.1	-	41	6740	c.6541G>A	c.(6541-6543)GAG>AAG	p.E2181K	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2181	Protein kinase.|Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		CTTGGTGGCTCCAGTCTCCCT	0.393000			T	GOPC|ROS1	glioblastoma|NSCLC								4	34					0	0	0.00024832	0	0
LAMA2	3908	broad.mit.edu	37	6	129571294	129571294	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr6:129571294C>T	uc003qbn.2	+	13	1925	c.1820C>T	c.(1819-1821)TCA>TTA	p.S607L	LAMA2_uc003qbo.2_Missense_Mutation_p.S607L	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	607	Laminin IV type A 1.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TTTACCATATCATATGACCTT	0.403000													30	10					0	0	0.00283554	0	0
TFAMP1	260341	broad.mit.edu	37	7	1654791	1654791	+	RNA	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:1654791G>A	uc003slb.2	+	1		c.686G>A				NR_001288				Homo sapiens transcription factor A, mitochondrial pseudogene 1 (TFAMP1), non-coding RNA.												0						ATGAAAACTGGAAAAATCTGT	0.333000													9	2					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82582174	82582174	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:82582174G>A	uc003uhx.2	-	5	8384	c.8095C>T	c.(8095-8097)CCT>TCT	p.P2699S	PCLO_uc003uhv.2_Missense_Mutation_p.P2699S|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2630					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGCTCTGGAGGAATTGTTATG	0.403000													56	42					0	0	0.00361006	0	0
CYP3A5	1577	broad.mit.edu	37	7	99261621	99261621	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:99261621C>T	uc003urq.2	-	8	855	c.768G>A	c.(766-768)ATG>ATA	p.M256I	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urp.2_Missense_Mutation_p.M76I|CYP3A5_uc003urr.2_Missense_Mutation_p.M143I|CYP3A5_uc011kiy.1_Missense_Mutation_p.M246I|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	256					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	GACTTTTCTTCATTCTGTTTA	0.313000													69	106					0	0	0.00361006	0	0
ACTL6B	51412	broad.mit.edu	37	7	100246201	100246201	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:100246201G>A	uc003uvy.2	-	7	754	c.647C>T	c.(646-648)CCA>CTA	p.P216L	ACTL6B_uc003uvx.1_Missense_Mutation_p.P7L|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	216					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					CATGTAAGGTGGGATGATGTC	0.582000													19	26					0	0	0.00121646	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				70	81					0	0	0.00361006	0	0
EPHA1	2041	broad.mit.edu	37	7	143095018	143095018	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:143095018G>A	uc003wcz.2	-	8	1697	c.1610C>T	c.(1609-1611)CCA>CTA	p.P537L		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	537	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CCCACCTGGTGGGCTGGTCCG	0.557000													47	75					0	0	0.00361006	0	0
OR6B1	135946	broad.mit.edu	37	7	143701816	143701816	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:143701816C>A	uc003wdt.1	+	1	727	c.727C>A	c.(727-729)CTT>ATT	p.L243I		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TGCCTCCCATCTTGTGGTGGT	0.438000													58	192					3.76628e-20	1.02265e-19	0.00361006	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147183114	147183114	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:147183114T>G	uc003weu.1	+	11	2274	c.1758T>G	c.(1756-1758)AGT>AGG	p.S586R		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	586	EGF-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CAGGATACAGTGGGGCCACCT	0.468000										HNSCC(39;0.1)			17	135					0	0	0.00121646	0	0
ZNF775	285971	broad.mit.edu	37	7	150093761	150093761	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr7:150093761G>A	uc003whf.1	+	3	317	c.192G>A	c.(190-192)GGG>GGA	p.G64G		NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	64					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAGCCCTGGGGGGACAGGAGG	0.706000													17	14					0	0	0.00152264	0	0
CSMD1	64478	broad.mit.edu	37	8	3087730	3087730	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr8:3087730C>T	uc011kwk.1	-	27	4570	c.4180G>A	c.(4180-4182)GAT>AAT	p.D1394N	CSMD1_uc011kwj.1_Missense_Mutation_p.D786N|CSMD1_uc003wqe.2_Missense_Mutation_p.D550N	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1394	Extracellular (Potential).|Sushi 8.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATACCTGGATCGTTACAGGTG	0.517000													10	15					0	0	0.000978159	0	0
SGCZ	137868	broad.mit.edu	37	8	13965704	13965704	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr8:13965704C>T	uc003wwq.2	-	6	1248	c.588G>A	c.(586-588)CCG>CCA	p.P196P	SGCZ_uc010lss.2_Silent_p.P149P	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	183	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CTCTGATGTGCGGCGTCTCCA	0.463000													29	36					0	0	0.00283554	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24254953	24254953	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr8:24254953C>T	uc003xdz.2	+	6	831	c.611C>T	c.(610-612)TCA>TTA	p.S204L	ADAMDEC1_uc010lub.2_Missense_Mutation_p.S125L|ADAMDEC1_uc011lab.1_Missense_Mutation_p.S125L	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	204					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		ATCTCTAGATCACTCAAAAGC	0.423000													54	94					0	0	0.00361006	0	0
C8orf80	389643	broad.mit.edu	37	8	27927077	27927077	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr8:27927077C>T	uc003xgm.3	-	4	384	c.241G>A	c.(241-243)GGA>AGA	p.G81R		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	81						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		TACTTGACTCCATTAGGGATG	0.413000													39	57					0	0	0.00128727	0	0
RRM2B	50484	broad.mit.edu	37	8	103225069	103225069	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr8:103225069T>C	uc003ykn.2	-	8	1082	c.838A>G	c.(838-840)ATT>GTT	p.I280V	RRM2B_uc003yko.2_RNA|RRM2B_uc010mbv.1_Missense_Mutation_p.I228V|RRM2B_uc010mbw.1_Missense_Mutation_p.I68V|RRM2B_uc010mbx.1_RNA|RRM2B_uc010mby.1_Intron	NM_015713	NP_056528	Q7LG56	RIR2B_HUMAN	ribonucleotide reductase M2 B (TP53 inducible)	280					deoxyribonucleoside diphosphate metabolic process|DNA repair|nucleobase, nucleoside and nucleotide interconversion	nucleoplasm	ribonucleoside-diphosphate reductase activity|transition metal ion binding			ovary(2)	2	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000728)			TTCATCAAAATGCAATTCATT	0.323000								Direct_reversal_of_damage|Modulation_of_nucleotide_pools					7	21					0	0	0.00198382	0	0
ZFAT	57623	broad.mit.edu	37	8	135649716	135649716	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr8:135649716C>A	uc003yup.2	-	3	611	c.436G>T	c.(436-438)GAA>TAA	p.E146*	ZFAT_uc003yun.2_Nonsense_Mutation_p.E134*|ZFAT_uc003yuo.2_Nonsense_Mutation_p.E134*|ZFAT_uc010meh.2_Nonsense_Mutation_p.E134*|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Nonsense_Mutation_p.E134*|ZFAT_uc010mej.2_Nonsense_Mutation_p.E146*|ZFAT_uc003yur.2_Nonsense_Mutation_p.E134*	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	146					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			GCTTCTCCTTCCTCCTCACCC	0.473000													67	76					1.37693e-34	3.7649e-34	0.00361006	1	0
GSDMD	79792	broad.mit.edu	37	8	144641624	144641624	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr8:144641624T>G	uc010mfe.2	+	5	822	c.119T>G	c.(118-120)GTG>GGG	p.V40G	uc003yye.2_5'Flank|GSDMD_uc003yyf.2_Missense_Mutation_p.V88G|GSDMD_uc003yyi.2_Missense_Mutation_p.V40G|GSDMD_uc003yyg.2_Missense_Mutation_p.V40G|GSDMD_uc003yyh.2_Missense_Mutation_p.V40G	NM_024736	NP_079012	P57764	GSDMD_HUMAN	gasdermin D	40											0						TACTGCCTGGTGGTTAGGAAG	0.587000													6	76					0	0	0.00307968	0	0
CCL27	10850	broad.mit.edu	37	9	34661981	34661981	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr9:34661981A>G	uc003zvm.1	-	3	358	c.299T>C	c.(298-300)CTG>CCG	p.L100P		NM_006664	NP_006655	Q9Y4X3	CCL27_HUMAN	small inducible cytokine A27 precursor	100					cell-cell signaling|chemotaxis|immune response	extracellular space	chemokine activity				0	all_epithelial(49;0.102)		STAD - Stomach adenocarcinoma(86;0.178)	GBM - Glioblastoma multiforme(74;0.173)		CAGCTTGGGCAGAGTCCCATG	0.493000													85	28					0	0	0.00361006	0	0
TRPM6	140803	broad.mit.edu	37	9	77377706	77377706	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr9:77377706C>T	uc004ajl.1	-	26	4119	c.3881G>A	c.(3880-3882)AGA>AAA	p.R1294K	TRPM6_uc004ajk.1_Missense_Mutation_p.R1289K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.R250K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1294	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CCTCTGCACTCTTGGGGGATG	0.478000													85	31					0	0	0.00361006	0	0
ROR2	4920	broad.mit.edu	37	9	94499762	94499762	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr9:94499762C>T	uc004arj.1	-	5	732	c.533G>A	c.(532-534)CGG>CAG	p.R178Q	ROR2_uc004ari.1_Missense_Mutation_p.R38Q|ROR2_uc004ark.2_Missense_Mutation_p.R178Q	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	178	FZ.|Extracellular (Potential).				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GGCAATTCCCCGGTAAGGCTG	0.532000													47	12					0	0	0.00361006	0	0
PDCL	5082	broad.mit.edu	37	9	125582721	125582721	+	Silent	SNP	G	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr9:125582721G>T	uc004bmz.1	-	4	645	c.549C>A	c.(547-549)ATC>ATA	p.I183I	PDCL_uc004bna.2_3'UTR	NM_005388	NP_005379	Q13371	PHLP_HUMAN	phosducin-like	183					signal transduction|visual perception						0						TATGAACCATGATGACAATGC	0.463000													40	7					1.59361e-14	4.31212e-14	0.00148497	1	0
FAM102A	399665	broad.mit.edu	37	9	130707123	130707123	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr9:130707123G>A	uc004bsx.1	-	9	1051	c.972C>T	c.(970-972)ATC>ATT	p.I324I	FAM102A_uc004bsw.1_Silent_p.I182I|FAM102A_uc004bsy.1_Silent_p.I52I	NM_001035254	NP_001030331	Q5T9C2	F102A_HUMAN	early estrogen-induced gene 1 protein isoform a	324										ovary(1)	1						CATCCGCATCGATCCGCGTGT	0.637000													17	3					0	0	0.00400662	0	0
ABL1	25	broad.mit.edu	37	9	133738217	133738217	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr9:133738217C>T	uc004bzw.2	+	4	620	c.617C>T	c.(616-618)GCC>GTC	p.A206V	ABL1_uc004bzv.2_Missense_Mutation_p.A225V|uc004bzx.1_5'Flank	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	206	SH2.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	TCAACGGTGGCCGACGGGCTC	0.572000			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								23	11					0	0	0.000878237	0	0
GPR143	4935	broad.mit.edu	37	X	9716651	9716651	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:9716651C>T	uc004cst.1	-	4	571	c.571G>A	c.(571-573)GAG>AAG	p.E191K		NM_000273	NP_000264	P51810	GP143_HUMAN	G protein-coupled receptor 143	171	Extracellular (Potential).				calcium-mediated signaling using intracellular calcium source|eye pigment biosynthetic process|melanosome organization|melanosome transport|phosphatidylinositol-mediated signaling|regulation of calcium-mediated signaling|visual perception	apical plasma membrane|Golgi apparatus|integral to membrane|lysosomal membrane|melanosome membrane|membrane fraction	dopamine binding|L-DOPA receptor activity|protein binding|tyrosine binding			ovary(1)	1		Hepatocellular(5;0.000888)				GCGGCTCCCTCCACACAGAGC	0.602000													31	11					0	0	0.00327116	0	0
FAM9C	171484	broad.mit.edu	37	X	13056599	13056599	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:13056599C>T	uc004cvh.1	-	7	672	c.462G>A	c.(460-462)AAG>AAA	p.K154K	FAM9C_uc004cvg.2_Silent_p.K154K	NM_174901	NP_777561	Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C	154						nucleus					0						GTTGCCACCTCTTTTGTTGCT	0.323000													30	7					0	0	0.001512	0	0
RPS6KA3	6197	broad.mit.edu	37	X	20211670	20211670	+	Silent	SNP	T	C	C			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:20211670T>C	uc004czu.2	-	7	528	c.528A>G	c.(526-528)GAA>GAG	p.E176E	RPS6KA3_uc011mjk.1_Silent_p.E147E|RPS6KA3_uc004czv.2_Silent_p.E164E|RPS6KA3_uc011mjl.1_Silent_p.E148E|RPS6KA3_uc011mjm.1_Silent_p.E148E	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	176	Protein kinase 1.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						CAAGTGCAAGTTCAGCCAAGT	0.289000													27	3					0	0	0.0024448	0	0
ZNF711	7552	broad.mit.edu	37	X	84510572	84510572	+	Silent	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:84510572C>T	uc004eeo.2	+	4	734	c.387C>T	c.(385-387)TTC>TTT	p.F129F	ZNF711_uc004eep.2_Silent_p.F129F|ZNF711_uc004eeq.2_Silent_p.F129F	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	129					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						AGCAGGTTTTCGTGGCTGACC	0.448000													63	19					0	0	0.00361006	0	0
ZNF711	7552	broad.mit.edu	37	X	84526085	84526085	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:84526085G>A	uc004eeo.2	+	9	1884	c.1537G>A	c.(1537-1539)GGT>AGT	p.G513S	ZNF711_uc004eep.2_Missense_Mutation_p.G513S|ZNF711_uc004eeq.2_Missense_Mutation_p.G559S|ZNF711_uc011mqy.1_Missense_Mutation_p.G112S	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	513	C2H2-type 4.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						GTGTGGGAAGGGTTTTCGACA	0.413000													30	1					0	0	0.00178596	0	0
NXF5	55998	broad.mit.edu	37	X	101096531	101096531	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:101096531C>T	uc011mrk.1	-	6	601	c.241_splice	c.e6-1	p.I81_splice	NXF5_uc004eih.1_Splice_Site|NXF5_uc004eii.1_Splice_Site|NXF5_uc004eij.1_Splice_Site|NXF5_uc004eik.1_Splice_Site|NXF5_uc004eil.1_Splice_Site	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5						mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						ATATACATATCTGCAGGAAGG	0.473000													47	18					0	0	0.00361006	0	0
GUCY2F	2986	broad.mit.edu	37	X	108684598	108684598	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:108684598G>A	uc004eod.3	-	7	1959	c.1683C>T	c.(1681-1683)TCC>TCT	p.S561S	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	561	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TCGCTATGTTGGAGTTTTCAT	0.413000													96	25					0	0	0.00361006	0	0
SLC9A6	10479	broad.mit.edu	37	X	135126865	135126865	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:135126865G>A	uc004ezj.2	+	16	2068	c.1992G>A	c.(1990-1992)ACG>ACA	p.T664T	SLC9A6_uc004ezk.2_Silent_p.T696T	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	664					regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					TAGATAATACGAGACATGGTC	0.423000													35	7					0	0	0.00128727	0	0
MAGEA12	4111	broad.mit.edu	37	X	151900372	151900372	+	Silent	SNP	G	A	A			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chrX:151900372G>A	uc010ntp.2	-	3	783	c.429C>T	c.(427-429)TTC>TTT	p.F143F	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.F143F|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	143	MAGE.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGAAGTCCTGGAAATTTCTGA	0.507000													81	12					0	0	0.00361006	0	0
TBC1D4	9882	broad.mit.edu	37	13	75873646	75873646	+	Frame_Shift_Del	DEL	A	-	-			TCGA-FS-A1ZF-06A-12D-A197-08	TCGA-FS-A1ZF-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	cfcf9643-5e4c-4f7f-a446-3de5fd09f730	a6d0e6e3-31eb-4efc-8f84-08c0eca68ae4	g.chr13:75873646delA	uc001vjl.1	-	17	3323	c.2976delT	c.(2974-2976)TTTfs	p.F992fs	TBC1D4_uc010tht.1_Frame_Shift_Del_p.F202fs|TBC1D4_uc010thu.1_Frame_Shift_Del_p.F149fs|TBC1D4_uc010aer.2_Frame_Shift_Del_p.F984fs|TBC1D4_uc010aes.2_Frame_Shift_Del_p.F929fs	NM_014832	NP_055647	O60343	TBCD4_HUMAN	TBC1 domain family, member 4	992	Rab-GAP TBC.					cytoplasm	Rab GTPase activator activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Prostate(6;0.014)|Breast(118;0.0982)		GBM - Glioblastoma multiforme(99;0.0116)		TCAGGAGGTTAAACAGTGACA	0.463													36	39	---	---	---	---					
