Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	982254	982254	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:982254G>A	uc001ack.1	+	19	3355	c.3305G>A	c.(3304-3306)AGG>AAG	p.R1102K		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1102					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CCTGTCGAGAGGGCTTCCTGC	0.697													3	9					0	0	0.004672	0	0
TAS1R1	80835	broad.mit.edu	37	1	6631078	6631078	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:6631078C>T	uc001ant.2	+	2	301	c.301C>T	c.(301-303)CAG>TAG	p.Q101*	TAS1R1_uc001anu.2_Nonsense_Mutation_p.Q101*|TAS1R1_uc001anv.2_Nonsense_Mutation_p.Q101*|TAS1R1_uc001anw.2_Nonsense_Mutation_p.Q101*	NM_138697	NP_619642	Q7RTX1	TS1R1_HUMAN	sweet taste receptor T1r isoform b	101	Extracellular (Potential).				sensory perception of umami taste	plasma membrane	protein heterodimerization activity|taste receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;8.73e-34)|all_epithelial(116;9.26e-22)|all_lung(118;7.57e-07)|Lung NSC(185;4.26e-06)|Breast(487;0.000353)|Renal(390;0.0007)|Colorectal(325;0.00104)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.29e-07)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00108)|STAD - Stomach adenocarcinoma(132;0.0167)|READ - Rectum adenocarcinoma(331;0.0642)		CCTGGGGTACCAGCTGTATGA	0.552													49	106					0	0	0.003610	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12854298	12854298	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:12854298G>A	uc001auj.1	+	3	625	c.522G>A	c.(520-522)AGG>AGA	p.R174R		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	174											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTTACCAAAGGAGAGGTTTAG	0.418													44	386					0	0	0.003610	0	0
PRAMEF10	343071	broad.mit.edu	37	1	12954470	12954470	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:12954470C>T	uc001auo.2	-	3	886	c.813G>A	c.(811-813)ATG>ATA	p.M271I		NM_001039361	NP_001034450	O60809	PRA10_HUMAN	PRAME family member 10	271											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTATATAAAGCATCTGGGGGT	0.468													30	227					0	0	0.002222	0	0
SPEN	23013	broad.mit.edu	37	1	16258976	16258976	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:16258976C>T	uc001axk.1	+	11	6445	c.6241C>T	c.(6241-6243)CGA>TGA	p.R2081*	SPEN_uc010obp.1_Nonsense_Mutation_p.R2040*	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	2081					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		AGGAAGATCTCGAAACTCCAG	0.512													21	120					0	0	0.001523	0	0
MST1P2	11209	broad.mit.edu	37	1	16976345	16976345	+	RNA	SNP	T	C	C	rs139809665	by1000genomes	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:16976345T>C	uc010och.1	+	13		c.2190T>C			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTTGCTGAATGTCATCTCCA	0.582													4	119					0	0	0.001984	0	0
PADI4	23569	broad.mit.edu	37	1	17681136	17681136	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:17681136G>A	uc001baj.2	+	11	1292	c.1264G>A	c.(1264-1266)GAA>AAA	p.E422K		NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	422					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	CAGGGGCAAGGAATACCCGCT	0.572													7	46					0	0	0.003080	0	0
TAS1R2	80834	broad.mit.edu	37	1	19168222	19168222	+	Splice_Site	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:19168222C>T	uc001bba.1	-	5	1592	c.1591_splice	c.e5+1	p.D531_splice		NM_152232	NP_689418	Q8TE23	TS1R2_HUMAN	taste receptor, type 1, member 2 precursor						detection of chemical stimulus involved in sensory perception of sweet taste	plasma membrane	protein heterodimerization activity|taste receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;3.46e-05)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Renal(390;0.000518)|Breast(348;0.000812)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;3.56e-05)|Kidney(64;0.000177)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)	Aspartame(DB00168)	GTGAATCATACCTTCAGTGTG	0.463													15	90					0	0	0.004990	0	0
ECE1	1889	broad.mit.edu	37	1	21551784	21551784	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:21551784C>T	uc001bek.2	-	17	2074	c.1999G>A	c.(1999-2001)GAG>AAG	p.E667K	ECE1_uc001bem.2_Missense_Mutation_p.E651K|ECE1_uc001bej.2_Missense_Mutation_p.E655K|ECE1_uc001bei.2_Missense_Mutation_p.E664K|ECE1_uc010odl.1_Missense_Mutation_p.E667K	NM_001397	NP_001388	P42892	ECE1_HUMAN	endothelin converting enzyme 1 isoform 1	667	Extracellular (Potential).	Zinc; catalytic.			bradykinin catabolic process|calcitonin catabolic process|ear development|embryonic digit morphogenesis|endothelin maturation|heart development|positive regulation of receptor recycling|substance P catabolic process	early endosome|external side of plasma membrane|integral to membrane|intrinsic to endosome membrane|membrane fraction|perinuclear region of cytoplasm|plasma membrane|Weibel-Palade body	metal ion binding|metalloendopeptidase activity|protein homodimerization activity			ovary(2)|skin(1)	3		Lung NSC(340;1.14e-05)|all_lung(284;1.23e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00147)|Ovarian(437;0.00432)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0183)|OV - Ovarian serous cystadenocarcinoma(117;4.83e-27)|COAD - Colon adenocarcinoma(152;1.36e-06)|GBM - Glioblastoma multiforme(114;1.47e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000162)|STAD - Stomach adenocarcinoma(196;0.00326)|KIRC - Kidney renal clear cell carcinoma(1967;0.00755)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.206)		GCGATGTTCTCCCCCAGGGTG	0.652													25	50					0	0	0.005443	0	0
CELA3A	10136	broad.mit.edu	37	1	22329551	22329551	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:22329551G>A	uc001bfl.2	+	2	118	c.99G>A	c.(97-99)GAG>GAA	p.E33E	CELA3B_uc009vqf.2_Intron	NM_005747	NP_005738	P09093	CEL3A_HUMAN	elastase 3A, pancreatic preproprotein	33	Peptidase S1.				cholesterol metabolic process|digestion|proteolysis		serine-type endopeptidase activity			haematopoietic_and_lymphoid_tissue(1)	1						TCCATGGTGAGGATGCGGTCC	0.602													46	81					0	0	0.003610	0	0
ZBTB40	9923	broad.mit.edu	37	1	22852732	22852732	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:22852732A>G	uc001bft.2	+	19	4074	c.3563A>G	c.(3562-3564)CAG>CGG	p.Q1188R	ZBTB40_uc001bfu.2_Missense_Mutation_p.Q1188R|ZBTB40_uc009vqi.1_Missense_Mutation_p.Q1076R	NM_001083621	NP_001077090	Q9NUA8	ZBT40_HUMAN	zinc finger and BTB domain containing 40	1188					bone mineralization|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.86e-26)|Colorectal(126;8.55e-08)|COAD - Colon adenocarcinoma(152;4.1e-06)|GBM - Glioblastoma multiforme(114;1.39e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000712)|KIRC - Kidney renal clear cell carcinoma(1967;0.00374)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0693)|Lung(427;0.216)		CCGACAGAGCAGGTGATCACT	0.582													31	52					0	0	0.008361	0	0
C1orf201	90529	broad.mit.edu	37	1	24685076	24685076	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:24685076G>A	uc001bjc.2	-	9	1097	c.962C>T	c.(961-963)TCC>TTC	p.S321F	C1orf201_uc010oej.1_Silent_p.V107V|C1orf201_uc001bja.2_Missense_Mutation_p.S274F|C1orf201_uc001bjb.2_Missense_Mutation_p.S229F|C1orf201_uc001bjd.2_Missense_Mutation_p.S321F			Q5TH74	CA201_HUMAN	RecName: Full=UPF0490 protein C1orf201;	321										ovary(1)|breast(1)	2		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.0191)|all_lung(284;0.0251)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.056)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;4.48e-25)|Colorectal(126;7.29e-08)|COAD - Colon adenocarcinoma(152;3.85e-06)|GBM - Glioblastoma multiforme(114;0.000399)|BRCA - Breast invasive adenocarcinoma(304;0.00107)|STAD - Stomach adenocarcinoma(196;0.00151)|KIRC - Kidney renal clear cell carcinoma(1967;0.00393)|READ - Rectum adenocarcinoma(331;0.0672)|Lung(427;0.145)		GTAGAGGAAGGACTGCTTTCC	0.557													8	76					0	0	0.004482	0	0
CSMD2	114784	broad.mit.edu	37	1	34006190	34006190	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:34006190G>A	uc001bxn.1	-	59	9163	c.9134C>T	c.(9133-9135)TCC>TTC	p.S3045F	CSMD2_uc001bxm.1_Missense_Mutation_p.S3189F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3045	Sushi 23.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CGCGGGCAGGGAGAGCTGGTA	0.587													27	70					0	0	0.006320	0	0
CSMD2	114784	broad.mit.edu	37	1	34100903	34100903	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:34100903G>A	uc001bxn.1	-	31	4906	c.4877C>T	c.(4876-4878)TCG>TTG	p.S1626L	CSMD2_uc001bxm.1_Missense_Mutation_p.S1666L|CSMD2_uc001bxo.1_Missense_Mutation_p.S539L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1626	Extracellular (Potential).|CUB 10.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CACTCCGTCCGAACCCACATA	0.527											OREG0013349	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	24					0	0	0.000248	0	0
CSMD2	114784	broad.mit.edu	37	1	34128492	34128492	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:34128492G>A	uc001bxn.1	-	26	4162	c.4133C>T	c.(4132-4134)TCA>TTA	p.S1378L	CSMD2_uc001bxm.1_Missense_Mutation_p.S1418L|CSMD2_uc001bxo.1_Missense_Mutation_p.S291L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1378	CUB 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCACAGACCTGAAAATTGAAT	0.557													22	125					0	0	0.002780	0	0
HMGB4	127540	broad.mit.edu	37	1	34329957	34329957	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:34329957T>G	uc001bxp.2	+	2	1908	c.165T>G	c.(163-165)CAT>CAG	p.H55Q	CSMD2_uc001bxm.1_Intron|CSMD2_uc001bxn.1_Intron|HMGB4_uc001bxq.2_5'UTR	NM_145205	NP_660206	Q8WW32	HMGB4_HUMAN	HMG2 like isoform 1	55						nucleus	DNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				TCTCAAAGCATGAAAAGGCCA	0.423													50	87					0	0	0.003610	0	0
GJB5	2709	broad.mit.edu	37	1	35223285	35223285	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:35223285G>A	uc001bxu.2	+	2	454	c.354G>A	c.(352-354)CTG>CTA	p.L118L	GJB4_uc001bxv.1_5'Flank	NM_005268	NP_005259	O95377	CXB5_HUMAN	gap junction protein, beta 5, 31.1kDa	118	Cytoplasmic (Potential).				cell communication|epidermis development	connexon complex|integral to membrane				ovary(1)	1		Myeloproliferative disorder(586;0.0393)				GCCTCTACCTGAACCCCGGCA	0.597													39	95					0	0	0.005524	0	0
INPP5B	3633	broad.mit.edu	37	1	38331520	38331520	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:38331520G>A	uc001ccg.1	-	22	2521	c.2427C>T	c.(2425-2427)TTC>TTT	p.F809F	INPP5B_uc009vvk.1_Intron|INPP5B_uc001ccf.1_Silent_p.F645F	NM_005540	NP_005531	P32019	I5P2_HUMAN	inositol polyphosphate-5-phosphatase, 75kDa	889	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|integral to membrane|microtubule cytoskeleton	GTPase activator activity|inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			urinary_tract(1)	1	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				GGCTCTCCAGGAAAAGCAGCA	0.507													21	57					0	0	0.001882	0	0
ZNF643	65243	broad.mit.edu	37	1	40929142	40929142	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:40929142A>G	uc001cfn.1	+	5	1783	c.1486A>G	c.(1486-1488)ATT>GTT	p.I496V	ZNF643_uc001cfl.1_Missense_Mutation_p.I394V|ZNF643_uc001cfm.1_Missense_Mutation_p.I362V	NM_023070	NP_075558	Q9UJL9	ZN643_HUMAN	zinc finger protein 643	496	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	Ovarian(52;0.00769)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;5.25e-18)			ACATCAGAGAATTCATACTGG	0.373													12	34					0	0	0.001368	0	0
MAST2	23139	broad.mit.edu	37	1	46497984	46497984	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:46497984C>T	uc001cov.2	+	25	3605	c.3322C>T	c.(3322-3324)CAC>TAC	p.H1108Y	MAST2_uc001cow.2_Missense_Mutation_p.H1108Y|MAST2_uc001cpa.2_Intron	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1108	PDZ.				regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					CATCATCATCCACCGAGCTGG	0.572													20	38					0	0	0.001523	0	0
MRPL37	51253	broad.mit.edu	37	1	54681876	54681876	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:54681876C>T	uc001cxa.3	+	6	1130	c.1053C>T	c.(1051-1053)GTC>GTT	p.V351V	MRPL37_uc009vzp.2_Silent_p.V220V|MRPL37_uc001cxb.1_Silent_p.V351V|MRPL37_uc001cxc.3_Silent_p.V39V|MRPL37_uc010oob.1_RNA	NM_016491	NP_057575	Q9BZE1	RM37_HUMAN	mitochondrial ribosomal protein L37 precursor	351					translation	mitochondrial ribosome	structural constituent of ribosome				0						ATGGACGTGTCTTCCATTTCC	0.522													45	115					0	0	0.003610	0	0
C1orf87	127795	broad.mit.edu	37	1	60499191	60499191	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:60499191C>T	uc001czs.1	-	7	1078	c.986G>A	c.(985-987)CGA>CAA	p.R329Q		NM_152377	NP_689590	Q8N0U7	CA087_HUMAN	hypothetical protein LOC127795	329							calcium ion binding			ovary(1)|breast(1)	2						ATCTTCTTTTCGAAAACTCAG	0.443													21	68					0	0	0.002780	0	0
TTLL7	79739	broad.mit.edu	37	1	84403605	84403605	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:84403605G>C	uc001djc.2	-	8	1214	c.818C>G	c.(817-819)TCC>TGC	p.S273C	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_Intron|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	273	TTL.				cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		CCATTTGATGGAACGTTTGCT	0.368													26	103					0	0	0.005443	0	0
FNBP1L	54874	broad.mit.edu	37	1	94016545	94016545	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:94016545C>T	uc001dpw.2	+	14	1519	c.1519C>T	c.(1519-1521)CTC>TTC	p.L507F	FNBP1L_uc001dpv.2_Missense_Mutation_p.L507F|FNBP1L_uc010otk.1_Missense_Mutation_p.L385F|FNBP1L_uc010otl.1_Intron	NM_001024948	NP_001020119	Q5T0N5	FBP1L_HUMAN	formin binding protein 1-like isoform 1	565	Interaction with DNM2 and WASL.|Interaction with DNM1.|SH3.|Interaction with DAAM1, DIAPH1 and DIAPH2.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	lipid binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00902)|Melanoma(281;0.155)		all cancers(265;0.00666)|GBM - Glioblastoma multiforme(16;0.0378)|Epithelial(280;0.111)		AGGTGAAGTTCTCTACATTAT	0.388													7	18					0	0	0.003080	0	0
DPYD	1806	broad.mit.edu	37	1	97981283	97981283	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:97981283T>C	uc001drv.2	-	13	1876	c.1739A>G	c.(1738-1740)AAG>AGG	p.K580R		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	580					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TTTTCTTACCTTATCAAGAGA	0.333													3	50					0	0	0.004672	0	0
COL11A1	1301	broad.mit.edu	37	1	103427818	103427818	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:103427818C>T	uc001dul.2	-	40	3346	c.3028G>A	c.(3028-3030)GAT>AAT	p.D1010N	COL11A1_uc001duk.2_Missense_Mutation_p.D206N|COL11A1_uc001dum.2_Missense_Mutation_p.D1022N|COL11A1_uc001dun.2_Missense_Mutation_p.D971N|COL11A1_uc009weh.2_Missense_Mutation_p.D894N	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1010	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GGACCTGGATCACCCTAAAGA	0.388													32	71					0	0	0.002836	0	0
FAM40A	85369	broad.mit.edu	37	1	110593614	110593614	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:110593614C>T	uc001dza.1	+	19	2012	c.1993C>T	c.(1993-1995)CTC>TTC	p.L665F	FAM40A_uc001dyz.1_Missense_Mutation_p.L570F|FAM40A_uc009wfp.1_Missense_Mutation_p.L489F	NM_033088	NP_149079	Q5VSL9	FA40A_HUMAN	hypothetical protein LOC85369	665						nucleus	protein binding			ovary(3)|large_intestine(1)	4		all_cancers(81;8.51e-05)|all_epithelial(167;3.58e-05)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0154)|all cancers(265;0.0732)|Epithelial(280;0.0781)|Colorectal(144;0.115)|LUSC - Lung squamous cell carcinoma(189;0.137)		CTGGAGGAACCTCTTTTCTTG	0.473													24	49					0	0	0.003954	0	0
C1orf103	55791	broad.mit.edu	37	1	111490704	111490704	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:111490704G>A	uc001eaa.2	-	4	2443	c.2187C>T	c.(2185-2187)TTC>TTT	p.F729F	C1orf103_uc001dzz.2_Silent_p.F193F|C1orf103_uc001eab.2_Silent_p.F193F|C1orf103_uc001eac.1_Silent_p.F192F	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	729					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		GTGTCACTGGGAAAATATCTT	0.368													57	129					0	0	0.003610	0	0
ADORA3	140	broad.mit.edu	37	1	112042689	112042689	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:112042689G>A	uc001ebh.3	-	2	1607	c.840C>T	c.(838-840)ATC>ATT	p.I280I	ADORA3_uc001ebg.3_Intron|ADORA3_uc001ebf.2_Intron	NM_000677	NP_000668	P33765	AA3R_HUMAN	adenosine A3 receptor isoform 2	280	Helical; Name=7; (By similarity).				activation of adenylate cyclase activity|inflammatory response|regulation of heart contraction	integral to plasma membrane	adenosine receptor activity, G-protein coupled			ovary(2)|large_intestine(1)|skin(1)	4		all_cancers(81;1.63e-06)|all_epithelial(167;5.01e-06)|all_lung(203;8.02e-05)|Lung NSC(277;0.000156)		all cancers(265;0.0185)|Colorectal(144;0.0186)|Lung(183;0.0238)|COAD - Colon adenocarcinoma(174;0.0644)|Epithelial(280;0.0872)|LUSC - Lung squamous cell carcinoma(189;0.134)	Adenosine(DB00640)|Aminophylline(DB01223)	AGGCATAGACGATAGGGTTCA	0.443													7	42					0	0	0.003080	0	0
PTPN22	26191	broad.mit.edu	37	1	114380974	114380974	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:114380974C>T	uc001eds.2	-	13	1178	c.1048G>A	c.(1048-1050)GAA>AAA	p.E350K	PTPN22_uc009wgq.2_Missense_Mutation_p.E295K|PTPN22_uc010owo.1_Missense_Mutation_p.E106K|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.E350K|PTPN22_uc009wgs.2_Missense_Mutation_p.E223K|PTPN22_uc001edu.2_Missense_Mutation_p.E350K	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	350					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GAAGAAGATTCTTTGATTTCC	0.368													10	20					0	0	0.006214	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			60	138					3.86002e-21	5.24108e-21	0.003610	1	0
SYCP1	6847	broad.mit.edu	37	1	115428188	115428188	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:115428188G>A	uc001efr.2	+	13	1152	c.943G>A	c.(943-945)GAG>AAG	p.E315K	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.E315K|SYCP1_uc009wgw.2_Missense_Mutation_p.E315K	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	315	Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAATCAATTGAGAAACAGCA	0.264													29	56					0	0	0.002836	0	0
SYCP1	6847	broad.mit.edu	37	1	115527450	115527450	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:115527450T>G	uc001efr.2	+	30	2873	c.2664T>G	c.(2662-2664)TTT>TTG	p.F888L	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.F888L|SYCP1_uc009wgw.2_Missense_Mutation_p.F863L	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	888					cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTTTGAATTTGATATTAATT	0.234													26	82					0	0	0.007291	0	0
TSPAN2	10100	broad.mit.edu	37	1	115615589	115615589	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:115615589G>A	uc001eft.2	-	2	171	c.109C>T	c.(109-111)CGG>TGG	p.R37W		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	37	Extracellular (Potential).					integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		CCTCCGAACCGAAACCATAGT	0.507													13	57					0	0	0.001855	0	0
HSD3B2	3284	broad.mit.edu	37	1	119958096	119958096	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:119958096C>T	uc001ehs.2	+	1	827	c.54C>T	c.(52-54)ATC>ATT	p.I18I	HSD3B2_uc001eht.2_Silent_p.I18I|HSD3B2_uc001ehu.2_Silent_p.I18I	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	18					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	GTCAGAGGATCGTCCGCCTGT	0.512													33	67					0	0	0.002096	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144877207	144877207	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:144877207C>T	uc001elw.3	-	28	4771	c.4480G>A	c.(4480-4482)GAA>AAA	p.E1494K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.E1450K|PDE4DIP_uc001elv.3_Missense_Mutation_p.E501K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1494					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		CCTCTCCCTTCTCGTATTTTT	0.428			T	PDGFRB	MPD								21	123					0	0	0.004656	0	0
LOC200030	200030	broad.mit.edu	37	1	148017601	148017601	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:148017601G>A	uc001eqf.2	-	12	1737	c.1702C>T	c.(1702-1704)CTC>TTC	p.L568F	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Intron|NBPF14_uc010pae.1_Intron|NBPF14_uc010paf.1_Intron|NBPF14_uc009wkf.1_RNA|NBPF14_uc001eqq.2_Missense_Mutation_p.L228F|NBPF14_uc001eqs.1_Missense_Mutation_p.L107F	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672	568	NBPF 3.					cytoplasm					0						GGAATTGAGAGAGTCGAATAA	0.498													54	433					0	0	0.003610	0	0
OTUD7B	56957	broad.mit.edu	37	1	149916096	149916096	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:149916096G>A	uc001etn.2	-	12	2548	c.2192C>T	c.(2191-2193)CCC>CTC	p.P731L		NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	731					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			GCACTGTCTGGGGAAGGTGGC	0.657													24	49					0	0	0.004656	0	0
GABPB2	126626	broad.mit.edu	37	1	151079543	151079543	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:151079543C>T	uc001ewr.2	+	7	1098	c.767C>T	c.(766-768)TCC>TTC	p.S256F	GABPB2_uc001ews.2_Missense_Mutation_p.S216F|GABPB2_uc001ewt.2_Missense_Mutation_p.S117F	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	256					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		GAAGGAAATTCCGTTGACTCA	0.393													13	35					0	0	0.004007	0	0
FLG	2312	broad.mit.edu	37	1	152277516	152277516	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:152277516G>A	uc001ezu.1	-	3	9882	c.9846C>T	c.(9844-9846)TCC>TCT	p.S3282S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3282	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCCACCAGAGGAAGTCTCTG	0.597									Ichthyosis				168	390					0	0	0.003610	0	0
SPRR1B	6699	broad.mit.edu	37	1	153004903	153004903	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:153004903C>T	uc001fba.2	+	2	146	c.82C>T	c.(82-84)CCA>TCA	p.P28S	SPRR1B_uc009wnx.1_RNA	NM_003125	NP_003116	P22528	SPR1B_HUMAN	small proline-rich protein 1B	28	2.|2 X 12 AA approximate repeats.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TTGCCAGCCTCCACCTCAGGA	0.627													40	140					0	0	0.003214	0	0
SPRR1B	6699	broad.mit.edu	37	1	153005062	153005062	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:153005062C>T	uc001fba.2	+	2	305	c.241C>T	c.(241-243)CCA>TCA	p.P81S	SPRR1B_uc009wnx.1_RNA	NM_003125	NP_003116	P22528	SPR1B_HUMAN	small proline-rich protein 1B	81					keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACTCCAGCACCAGCCCAGCA	0.607													18	48					0	0	0.006122	0	0
ZBTB7B	51043	broad.mit.edu	37	1	154987719	154987719	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:154987719C>T	uc001fgk.3	+	3	741	c.583C>T	c.(583-585)CGG>TGG	p.R195W	ZBTB7B_uc009wpa.2_Missense_Mutation_p.R195W|ZBTB7B_uc001fgj.3_Missense_Mutation_p.R229W|ZBTB7B_uc010peq.1_Missense_Mutation_p.R229W|ZBTB7B_uc001fgl.3_Missense_Mutation_p.R195W	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	195	Pro-rich.				cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			ACCGCCACCTCGGCCTGTTGC	0.657													20	70					0	0	0.007413	0	0
INSRR	3645	broad.mit.edu	37	1	156815025	156815025	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:156815025G>A	uc010pht.1	-	12	2534	c.2280C>T	c.(2278-2280)TTC>TTT	p.F760F	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	760	Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCTGGATCTCGAAATCCGAGC	0.692													7	20					0	0	0.001984	0	0
INSRR	3645	broad.mit.edu	37	1	156816462	156816462	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:156816462G>A	uc010pht.1	-	8	1913	c.1659C>T	c.(1657-1659)AGC>AGT	p.S553S	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	553	Fibronectin type-III 1.				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCTGGGTGCGGCTTAGGGGCA	0.612													22	51					0	0	0.001882	0	0
FCRL3	115352	broad.mit.edu	37	1	157667200	157667200	+	Missense_Mutation	SNP	G	A	A	rs138227125		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:157667200G>A	uc001frb.2	-	6	866	c.574C>T	c.(574-576)CCT>TCT	p.P192S	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P192S|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_Intron|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.P192S	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	192	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CTCAGCACAGGATGTAGAAAC	0.532													25	60					0	0	0.005443	0	0
CD5L	922	broad.mit.edu	37	1	157809178	157809178	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:157809178G>A	uc001frk.3	-	2	194	c.51C>T	c.(49-51)TTC>TTT	p.F17F		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	17					apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			TCTTACCTAGGAATCCAGGTC	0.443													31	85					0	0	0.006230	0	0
CD1E	913	broad.mit.edu	37	1	158324216	158324216	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:158324216C>T	uc001fse.2	+	2	347	c.108C>T	c.(106-108)TCC>TCT	p.S36S	CD1E_uc010pid.1_Silent_p.S34S|CD1E_uc010pie.1_Intron|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Silent_p.S36S|CD1E_uc001fsk.2_Silent_p.S36S|CD1E_uc001fsj.2_Silent_p.S36S|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Silent_p.S36S|CD1E_uc001fry.2_Silent_p.S36S|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Silent_p.S36S|CD1E_uc009wsv.2_Intron|CD1E_uc001frz.2_Silent_p.S36S|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	36					antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					AGCAGCTGTCCTTCCGCATGC	0.542													52	124					0	0	0.003610	0	0
OR10J5	127385	broad.mit.edu	37	1	159505559	159505559	+	Missense_Mutation	SNP	C	T	T	rs146863607		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:159505559C>T	uc010piw.1	-	1	239	c.239G>A	c.(238-240)CGA>CAA	p.R80Q		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	80	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R80Q(1)		skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					CAAAAGCATTCGTGGCACAAT	0.428													32	66					0	0	0.001786	0	0
GPR161	23432	broad.mit.edu	37	1	168065816	168065816	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:168065816C>T	uc001gfc.2	-	5	1343	c.1029G>A	c.(1027-1029)CGG>CGA	p.R343R	GPR161_uc001gfb.2_Silent_p.R211R|GPR161_uc010pll.1_Silent_p.R253R|GPR161_uc010plm.1_Silent_p.R229R|GPR161_uc009wvo.2_Silent_p.R360R|GPR161_uc001gfd.2_Silent_p.R343R|GPR161_uc010pln.1_Silent_p.R363R|GPR161_uc001gfe.1_Silent_p.R343R	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	343	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					CCCGATAATACCGGTCCCCAA	0.522													26	51					0	0	0.004656	0	0
F5	2153	broad.mit.edu	37	1	169515828	169515828	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:169515828C>T	uc001ggg.1	-	11	1759	c.1614G>A	c.(1612-1614)AGG>AGA	p.R538R	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	538	Plastocyanin-like 4.|F5/8 type A 2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TGTCTGCTGCCCTCTGGAGGA	0.254													28	69					0	0	0.008361	0	0
PRDX6	9588	broad.mit.edu	37	1	173455410	173455410	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:173455410C>T	uc001giy.1	+	4	467	c.416C>T	c.(415-417)CCT>CTT	p.P139L		NM_004905	NP_004896	P30041	PRDX6_HUMAN	peroxiredoxin 6	139	Thioredoxin.				cell redox homeostasis|phospholipid catabolic process	cytoplasmic membrane-bounded vesicle|cytosol|lysosome	peroxiredoxin activity|phospholipase A2 activity|protein binding			central_nervous_system(1)	1						GTTTTTGGTCCTGATAAGAAG	0.428													53	179					0	0	0.003610	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563949	176563949	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:176563949C>A	uc001gkz.2	+	3	2373	c.1209C>A	c.(1207-1209)TGC>TGA	p.C403*	PAPPA2_uc001gky.1_Nonsense_Mutation_p.C403*|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	403					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGGCATCTTGCCGCTCTTTGC	0.592													24	89					1.55469e-16	2.10146e-16	0.003330	1	0
C1orf125	126859	broad.mit.edu	37	1	179363135	179363135	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:179363135G>A	uc001gmo.2	+	10	1088	c.961G>A	c.(961-963)GAA>AAA	p.E321K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_Missense_Mutation_p.E109K|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E321K	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	321	Potential.										0						GCGCATTTTAGAAGAATTGTA	0.378													32	100					0	0	0.002096	0	0
RNASEL	6041	broad.mit.edu	37	1	182555916	182555916	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:182555916G>A	uc001gpj.1	-	1	193	c.26C>T	c.(25-27)CCC>CTC	p.P9L	RNASEL_uc009wxz.1_Missense_Mutation_p.P9L|RNASEL_uc001gpk.2_Missense_Mutation_p.P9L|RNASEL_uc009wya.1_Missense_Mutation_p.P9L	NM_021133	NP_066956	Q05823	RN5A_HUMAN	ribonuclease L	9					mRNA processing|response to virus|type I interferon-mediated signaling pathway	mitochondrion	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|metal ion binding|protein kinase activity|RNA binding			ovary(4)|stomach(1)	5						TCCCTCCTGGGGGTTGTTATG	0.478									Hereditary_Prostate_Cancer				50	94					0	0	0.003610	0	0
FAM129A	116496	broad.mit.edu	37	1	184765070	184765071	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:184765070_184765071CC>TT	uc001gra.2	-	14	2021_2022	c.1827_1828GG>AA	c.(1825-1830)CTGGGT>CTAAGT	p.G610S	FAM129A_uc001grb.1_Missense_Mutation_p.G373S	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	610					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GTCTCACTACCCAGAACTCCTG	0.55													32	102					0	0	0.004672	0	0
HMCN1	83872	broad.mit.edu	37	1	185970529	185970529	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:185970529C>T	uc001grq.1	+	27	4398	c.4169C>T	c.(4168-4170)CCC>CTC	p.P1390L		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1390	Ig-like C2-type 11.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ACTCCATCTCCCATCATTATG	0.388													13	53					0	0	0.002450	0	0
CFHR2	3080	broad.mit.edu	37	1	196928040	196928040	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:196928040G>A	uc001gtq.1	+	5	720	c.643G>A	c.(643-645)GAA>AAA	p.E215K	CFHR2_uc001gtr.1_Missense_Mutation_p.E91K	NM_005666	NP_005657	P36980	FHR2_HUMAN	H factor (complement)-like 3 precursor	215	Sushi 4.					extracellular region				skin(2)|ovary(1)	3						AGAAATTATGGAAAAATATAA	0.284													9	24					0	0	0.006214	0	0
F13B	2165	broad.mit.edu	37	1	197026195	197026195	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:197026195C>T	uc001gtt.1	-	7	1163	c.1119G>A	c.(1117-1119)TCG>TCA	p.S373S		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	373	Sushi 6.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TTATCTCATTCGATCCATGGA	0.373													20	43					0	0	0.001523	0	0
NUAK2	81788	broad.mit.edu	37	1	205272734	205272734	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:205272734G>A	uc001hce.2	-	7	1858	c.1731C>T	c.(1729-1731)CTC>CTT	p.L577L		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	577					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			CAAGCCCCGTGAGGTTGTCCA	0.647													29	64					0	0	0.007291	0	0
NUAK2	81788	broad.mit.edu	37	1	205272896	205272896	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:205272896G>A	uc001hce.2	-	7	1696	c.1569C>T	c.(1567-1569)TCC>TCT	p.S523S		NM_030952	NP_112214	Q9H093	NUAK2_HUMAN	NUAK family, SNF1-like kinase, 2	523					actin cytoskeleton organization|apoptosis|cellular response to glucose starvation|negative regulation of apoptosis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|stomach(1)|breast(1)	5	Breast(84;0.186)		BRCA - Breast invasive adenocarcinoma(75;0.117)			GTTCATCCAGGGAGCCGAAGG	0.642													29	83					0	0	0.002096	0	0
RAB7L1	8934	broad.mit.edu	37	1	205740632	205740632	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:205740632C>T	uc001hdf.3	-	4	686	c.346G>A	c.(346-348)GAG>AAG	p.E116K	RAB7L1_uc009xbp.2_Missense_Mutation_p.E44K|RAB7L1_uc001hde.3_Missense_Mutation_p.E116K|RAB7L1_uc010prr.1_Missense_Mutation_p.E92K|RAB7L1_uc009xbq.2_Intron	NM_003929	NP_003920	O14966	RAB7L_HUMAN	RAB7, member RAS oncogene family-like 1 isoform	116					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding			ovary(1)	1	Breast(84;0.0799)		BRCA - Breast invasive adenocarcinoma(75;0.0194)			GGCACCGGCTCTCCATTGGGT	0.493													114	270					0	0	0.003610	0	0
CR1L	1379	broad.mit.edu	37	1	207851610	207851610	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:207851610C>T	uc001hga.3	+	3	466	c.345C>T	c.(343-345)TTC>TTT	p.F115F	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	115	Sushi 2.					cytoplasm|extracellular region|membrane					0						ACATCCAGTTCAGATCCCAAA	0.408													36	67					0	0	0.006230	0	0
CD34	947	broad.mit.edu	37	1	208061248	208061248	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:208061248C>T	uc001hgw.1	-	8	1251	c.993G>A	c.(991-993)ACG>ACA	p.T331T	CD34_uc001hgv.1_Silent_p.T173T|CD34_uc001hgx.1_3'UTR|CD34_uc010psj.1_Silent_p.T196T	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	331	Cytoplasmic (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						CACCGTTTTCCGTGTAATAAG	0.557													7	25					0	0	0.003080	0	0
USH2A	7399	broad.mit.edu	37	1	216262415	216262415	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:216262415C>T	uc001hku.1	-	23	5212	c.4825G>A	c.(4825-4827)GAA>AAA	p.E1609K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1609	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCAATTATTTCATGCCATTTT	0.338										HNSCC(13;0.011)			27	71					0	0	0.006320	0	0
USH2A	7399	broad.mit.edu	37	1	216462695	216462695	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:216462695G>A	uc001hku.1	-	11	2285	c.1898C>T	c.(1897-1899)TCG>TTG	p.S633L	USH2A_uc001hkv.2_Missense_Mutation_p.S633L	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	633	Laminin EGF-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATCTATGGCCGAAGGATCTGC	0.408										HNSCC(13;0.011)			25	58					0	0	0.004656	0	0
GALNT2	2590	broad.mit.edu	37	1	230381829	230381829	+	Silent	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:230381829A>G	uc010pwa.1	+	8	822	c.750A>G	c.(748-750)TCA>TCG	p.S250S	GALNT2_uc010pvy.1_Silent_p.S212S|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	250	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				GGGTTGTGTCACCCATCATCG	0.463													35	105					0	0	0.002522	0	0
RYR2	6262	broad.mit.edu	37	1	237754065	237754065	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:237754065G>A	uc001hyl.1	+	31	4053	c.3933G>A	c.(3931-3933)GCG>GCA	p.A1311A		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1311	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCGAGTGCGCGGAGGTCTTCT	0.502													59	157					0	0	0.003610	0	0
RYR2	6262	broad.mit.edu	37	1	237774194	237774194	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:237774194G>A	uc001hyl.1	+	36	4936	c.4816G>A	c.(4816-4818)GTA>ATA	p.V1606I		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1606	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GTTTTTGAAGGTAGATGTGTC	0.547													8	16					0	0	0.003080	0	0
RYR2	6262	broad.mit.edu	37	1	237982430	237982430	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:237982430G>A	uc001hyl.1	+	101	14648	c.14528G>A	c.(14527-14529)CGA>CAA	p.R4843Q	RYR2_uc010pyb.1_Missense_Mutation_p.R276Q	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4843					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAGATCTATCGAATCATCTTT	0.418													30	77					0	0	0.006320	0	0
AHCTF1	25909	broad.mit.edu	37	1	247063765	247063765	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:247063765G>A	uc001ibu.1	-	8	1131	c.1124C>T	c.(1123-1125)TCG>TTG	p.S375L	AHCTF1_uc001ibv.1_Missense_Mutation_p.S384L|AHCTF1_uc009xgs.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	375	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			AGTGTCAGGCGATAGAGCTGG	0.328													29	48					0	0	0.007291	0	0
ZNF695	57116	broad.mit.edu	37	1	247163224	247163224	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:247163224G>A	uc009xgu.2	-	2	301	c.156C>T	c.(154-156)TTC>TTT	p.F52F	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron|ZNF695_uc009xgt.1_RNA|ZNF695_uc001ibx.2_Silent_p.F52F|ZNF695_uc001iby.2_RNA|ZNF695_uc001icc.2_Intron	NM_020394	NP_065127	Q8IW36	ZN695_HUMAN	zinc finger protein SBZF3	52	KRAB.				regulation of transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TGTGAAATAGGAATTGCATAT	0.398													19	28					0	0	0.006122	0	0
NLRP3	114548	broad.mit.edu	37	1	247588398	247588398	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:247588398G>A	uc001icr.2	+	5	1791	c.1653G>A	c.(1651-1653)TTG>TTA	p.L551L	NLRP3_uc001ics.2_Silent_p.L551L|NLRP3_uc001icu.2_Silent_p.L551L|NLRP3_uc001icw.2_Silent_p.L551L|NLRP3_uc001icv.2_Silent_p.L551L|NLRP3_uc010pyw.1_Silent_p.L549L|NLRP3_uc001ict.1_Silent_p.L549L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	551					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			GGAGTCGTTTGAAGCTTCCCA	0.473													13	30					0	0	0.001368	0	0
OR2G2	81470	broad.mit.edu	37	1	247752184	247752184	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:247752184C>T	uc010pyy.1	+	1	523	c.523C>T	c.(523-525)CGC>TGC	p.R175C		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTGTGGGCATCGCCAAGTGGA	0.557													42	134					0	0	0.006999	0	0
OR2M7	391196	broad.mit.edu	37	1	248487141	248487141	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr1:248487141G>A	uc010pzk.1	-	1	730	c.730C>T	c.(730-732)CAC>TAC	p.H244Y		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ACCATGAGGTGAGAGGAACAA	0.458													53	154					0	0	0.003610	0	0
ITIH5	80760	broad.mit.edu	37	10	7657990	7657990	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:7657990G>A	uc001ijq.2	-	7	973	c.894C>T	c.(892-894)TTC>TTT	p.F298F	ITIH5_uc001ijp.2_Silent_p.F84F|ITIH5_uc001ijr.1_Silent_p.F298F	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	298	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TGTCAAGCACGAATACCACAT	0.478													34	90					0	0	0.006230	0	0
CAMK1D	57118	broad.mit.edu	37	10	12802951	12802951	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:12802951T>A	uc001ilo.2	+	4	539	c.304T>A	c.(304-306)TCC>ACC	p.S102T	CAMK1D_uc001iln.2_Missense_Mutation_p.S102T	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	102	Protein kinase.					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		TGCCAGGGTGTCCGGTGGAGA	0.433													109	194					0	0	0.003610	0	0
KIAA1217	56243	broad.mit.edu	37	10	24669797	24669797	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:24669797G>A	uc001iru.3	+	3	758	c.355_splice	c.e3-1	p.T119_splice	KIAA1217_uc001irs.2_Splice_Site_p.T39_splice|KIAA1217_uc001irt.3_Splice_Site_p.T119_splice|KIAA1217_uc010qcy.1_Splice_Site_p.T119_splice|KIAA1217_uc010qcz.1_Splice_Site_p.T119_splice|KIAA1217_uc001irv.1_Splice_Site|KIAA1217_uc010qda.1_Splice_Site	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1						embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GCCTTTTGCAGACAAGGAGCC	0.423													25	75					0	0	0.003954	0	0
YME1L1	10730	broad.mit.edu	37	10	27434373	27434373	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:27434373G>A	uc001iti.2	-	4	668	c.486C>T	c.(484-486)TTC>TTT	p.F162F	YME1L1_uc001itj.2_Silent_p.F105F|YME1L1_uc010qdl.1_Silent_p.F105F|YME1L1_uc009xkv.2_RNA|YME1L1_uc001itk.1_3'UTR	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1	162					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						TATTTTCAAAGAAGGATTGTG	0.318													16	39					0	0	0.004990	0	0
ARMC4	55130	broad.mit.edu	37	10	28276346	28276346	+	Silent	SNP	C	T	T	rs146041171		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:28276346C>T	uc009xky.2	-	3	449	c.351G>A	c.(349-351)GGG>GGA	p.G117G	ARMC4_uc001itz.2_Silent_p.G117G	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	117							binding			ovary(4)|skin(2)	6						CCTTCAACTTCCCAGTTTTGG	0.413													14	50					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	10	30998303	30998303	+	Silent	SNP	C	T	T	rs113012238	by1000genomes	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:30998303C>T	uc010qdx.1	+	8	1391	c.849C>T	c.(847-849)TTC>TTT	p.F283F						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		CCACGGAGTTCGTGTACCCTG	0.587													20	46					0	0	0.002299	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37442579	37442579	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:37442579G>A	uc001iza.1	+	13	1718	c.1619G>A	c.(1618-1620)GGA>GAA	p.G540E		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	596						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						AAAATAAATGGAAAATTAGAA	0.323													21	164					0	0	0.001523	0	0
RET	5979	broad.mit.edu	37	10	43595906	43595906	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:43595906G>A	uc001jal.2	+	2	264	c.74_splice	c.e2-1	p.V25_splice	RET_uc001jak.1_Splice_Site_p.V25_splice	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a						homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	ACTTCCCACAGTGGCATTGGG	0.483		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				23	43					0	0	0.005443	0	0
ZNF239	8187	broad.mit.edu	37	10	44053482	44053482	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:44053482G>A	uc001jaw.3	-	2	699	c.46C>T	c.(46-48)CGA>TGA	p.R16*	ZNF239_uc001jax.3_Nonsense_Mutation_p.R16*|ZNF239_uc009xmj.2_Nonsense_Mutation_p.R16*|ZNF239_uc009xmk.2_Nonsense_Mutation_p.R16*	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	16					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						ACTTCCCCTCGATGATTCACA	0.463													11	29					0	0	0.000978	0	0
CXCL12	6387	broad.mit.edu	37	10	44876329	44876329	+	Splice_Site	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:44876329C>A	uc001jbf.2	-	2	151	c.62_splice	c.e2-1	p.G21_splice	CXCL12_uc001jbh.2_Splice_Site_p.G21_splice|CXCL12_uc001jbi.2_Splice_Site_p.G21_splice	NM_000609	NP_000600	P48061	SDF1_HUMAN	chemokine (C-X-C motif) ligand 12 (stromal						blood circulation|cell adhesion|cellular calcium ion homeostasis|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|negative regulation of leukocyte apoptosis|positive regulation of monocyte chemotaxis|regulation of actin polymerization or depolymerization|response to virus	extracellular space	chemokine activity|growth factor activity|signal transducer activity				0					Dexamethasone(DB01234)	ACGGGCTTCCCTAGAAGAGGT	0.493													8	461					0.00448238	0.00594521	0.004482	1	0
SYT15	83849	broad.mit.edu	37	10	46965844	46965844	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:46965844G>A	uc001jea.2	-	5	846	c.693C>T	c.(691-693)TCC>TCT	p.S231S	SYT15_uc001jdz.2_Silent_p.S231S|SYT15_uc001jeb.2_Silent_p.S109S|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	231	Cytoplasmic (Potential).|C2 1.					integral to membrane|plasma membrane					0						CGTGGTAGACGGAGAACTTCA	0.617													6	43					0	0	0.001168	0	0
RBP3	5949	broad.mit.edu	37	10	48390452	48390452	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:48390452C>T	uc001jez.2	-	1	540	c.426G>A	c.(424-426)GAG>GAA	p.E142E		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	142	4 X approximate tandem repeats.|1.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TGCTCAGCACCTCCTGGCCCG	0.642													33	80					0	0	0.003271	0	0
DRGX	644168	broad.mit.edu	37	10	50594858	50594858	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:50594858C>T	uc010qgq.1	-	4	296	c.296G>A	c.(295-297)GGG>GAG	p.G99E		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	99					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GTCTGAGGCCCCTCTCTCTGT	0.567													47	180					0	0	0.003610	0	0
SGMS1	259230	broad.mit.edu	37	10	52086980	52086980	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:52086980G>A	uc001jje.2	-	8	1680	c.726C>T	c.(724-726)TTC>TTT	p.F242F	SGMS1_uc010qhk.1_Silent_p.F73F|SGMS1_uc009xot.1_RNA|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	248					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						GAGAACAGTTGAAATGCATAC	0.423													11	43					0	0	0.000978	0	0
SGMS1	259230	broad.mit.edu	37	10	52103795	52103795	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:52103795G>A	uc001jje.2	-	7	1034	c.80C>T	c.(79-81)CCT>CTT	p.P27L	SGMS1_uc010qhk.1_Intron|SGMS1_uc009xot.1_Intron|SGMS1_uc009xou.1_Missense_Mutation_p.P27L|SGMS1_uc010qhl.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	33	SAM.				apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						ATGCTCCAGAGGCTCACAGTA	0.522													27	71					0	0	0.003954	0	0
ANK3	288	broad.mit.edu	37	10	61831288	61831288	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:61831288G>A	uc001jky.2	-	37	9543	c.9351C>T	c.(9349-9351)ATC>ATT	p.I3117I	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3117					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCTGACTTATGATTTTTTTTA	0.403													41	119					0	0	0.008740	0	0
EGR2	1959	broad.mit.edu	37	10	64573365	64573365	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:64573365C>T	uc010qim.1	-	3	1187	c.1033G>A	c.(1033-1035)GAA>AAA	p.E345K	EGR2_uc010qin.1_Missense_Mutation_p.E295K|EGR2_uc001jmi.2_Missense_Mutation_p.E345K|EGR2_uc010qio.1_Missense_Mutation_p.E358K|EGR2_uc009xph.2_Missense_Mutation_p.E345K	NM_001136177	NP_001129649	P11161	EGR2_HUMAN	early growth response 2 protein isoform a	345	C2H2-type 1.				fat cell differentiation|protein export from nucleus|transcription from RNA polymerase II promoter	cytoplasm|nucleus	chromatin binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					TCGCAGCCTTCTGCTGGGCAC	0.642													21	76					0	0	0.002299	0	0
CAMK2G	818	broad.mit.edu	37	10	75634172	75634172	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:75634172G>A	uc001jvv.1	-	1	172	c.48C>T	c.(46-48)CTC>CTT	p.L16L	CAMK2G_uc001jvm.1_Silent_p.L16L|CAMK2G_uc001jvo.1_Silent_p.L16L|CAMK2G_uc001jvq.1_Silent_p.L16L|CAMK2G_uc001jvr.1_Silent_p.L16L|CAMK2G_uc001jvp.1_Silent_p.L16L|CAMK2G_uc001jvs.1_Silent_p.L16L|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Silent_p.L16L|CAMK2G_uc010qkv.1_5'UTR	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	16	Protein kinase.				insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					GCTCCTCGAAGAGCTGGTAGT	0.647													15	23					0	0	0.004007	0	0
NRG3	10718	broad.mit.edu	37	10	84711264	84711264	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:84711264C>T	uc001kco.2	+	5	1121	c.1094C>T	c.(1093-1095)TCA>TTA	p.S365L	NRG3_uc010qlz.1_Missense_Mutation_p.S364L|NRG3_uc001kcp.2_Missense_Mutation_p.S144L|NRG3_uc001kcq.2_Missense_Mutation_p.S15L|NRG3_uc001kcr.2_Missense_Mutation_p.S15L	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	365	Helical; Note=Internal signal sequence; (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CTGTCAATTTCATGTATCATC	0.378													39	60					0	0	0.008740	0	0
ATAD1	84896	broad.mit.edu	37	10	89527456	89527456	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:89527456G>A	uc001key.1	-	7	1088	c.805C>T	c.(805-807)CTG>TTG	p.L269L	ATAD1_uc010qmr.1_Silent_p.L181L|ATAD1_uc009xth.1_RNA|ATAD1_uc001kez.1_Silent_p.L269L	NM_032810	NP_116199	Q8NBU5	ATAD1_HUMAN	ATPase family, AAA domain containing 1	269						peroxisome	ATP binding|nucleoside-triphosphatase activity			large_intestine(1)|ovary(1)	2		all_cancers(4;6.78e-12)|Prostate(4;3.56e-12)|all_epithelial(4;5.58e-09)|Melanoma(5;0.0273)|Breast(4;0.0424)|all_hematologic(4;0.0846)|Colorectal(252;0.207)|Glioma(4;0.217)|all_neural(4;0.224)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00131)|GBM - Glioblastoma multiforme(1;1.1e-32)|Lung(2;1.4e-05)|LUSC - Lung squamous cell carcinoma(2;2.69e-05)|Colorectal(12;7.09e-05)|COAD - Colon adenocarcinoma(12;0.000261)|STAD - Stomach adenocarcinoma(243;0.235)		ATGAGTTTCAGGATTGCTTCT	0.259													20	100					0	0	0.006320	0	0
CYP2C18	1562	broad.mit.edu	37	10	96454814	96454814	+	Silent	SNP	C	T	T	rs11188057		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:96454814C>T	uc001kjv.3	+	4	948	c.622C>T	c.(622-624)CTG>TTG	p.L208L	CYP2C18_uc001kjw.3_Silent_p.L208L|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	208					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		CCTCAGGATTCTGAGCTCTCC	0.323													13	27					0	0	0.001368	0	0
BLNK	29760	broad.mit.edu	37	10	97990570	97990570	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:97990570C>T	uc001kls.3	-	4	362	c.184G>A	c.(184-186)GAG>AAG	p.E62K	BLNK_uc001kme.3_Intron|BLNK_uc001klt.3_Intron|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_5'UTR|BLNK_uc001klv.3_Missense_Mutation_p.E62K|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Missense_Mutation_p.E62K|BLNK_uc001kly.3_Missense_Mutation_p.E62K|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Missense_Mutation_p.E62K|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_5'UTR|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	62				E -> Q (in Ref. 3; AAH18906).	B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		GACCACTGCTCCTCTTCGTCA	0.542													5	23					0	0	0.001984	0	0
HPSE2	60495	broad.mit.edu	37	10	100374730	100374730	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:100374730G>A	uc001kpn.1	-	9	1311	c.1251C>T	c.(1249-1251)GTC>GTT	p.V417V	HPSE2_uc009xwc.1_Silent_p.V407V|HPSE2_uc001kpo.1_Silent_p.V349V|HPSE2_uc009xwd.1_Silent_p.V295V	NM_021828	NP_068600	Q8WWQ2	HPSE2_HUMAN	heparanase 2	417					carbohydrate metabolic process	intracellular|membrane	cation binding|heparanase activity			ovary(1)	1				Epithelial(162;1.8e-09)|all cancers(201;4.72e-07)		GCCGTATCACGACATCAATGC	0.388													35	68					0	0	0.004289	0	0
ELOVL3	83401	broad.mit.edu	37	10	103988322	103988322	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:103988322C>T	uc001kut.2	+	3	545	c.382C>T	c.(382-384)CTC>TTC	p.L128F		NM_152310	NP_689523	Q9HB03	ELOV3_HUMAN	elongation of very long chain fatty acids like	128					fatty acid elongation, monounsaturated fatty acid|fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding			ovary(2)	2		Colorectal(252;0.207)		Epithelial(162;4.47e-08)|all cancers(201;7.96e-07)		GGTCATAGAACTCGGTGAGTG	0.512													40	67					0	0	0.003610	0	0
PDCD11	22984	broad.mit.edu	37	10	105200065	105200065	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:105200065C>A	uc001kwy.1	+	29	4254	c.4167C>A	c.(4165-4167)AAC>AAA	p.N1389K		NM_014976	NP_055791	Q14690	RRP5_HUMAN	programmed cell death 11	1389	S1 motif 12.				mRNA processing|rRNA processing	nucleolus	RNA binding|transcription factor binding			ovary(2)|breast(2)|skin(2)|central_nervous_system(1)	7		Colorectal(252;0.0747)|Breast(234;0.128)		Epithelial(162;7.21e-09)|all cancers(201;1.17e-08)|BRCA - Breast invasive adenocarcinoma(275;0.208)		ACCAGAAGAACCTGGTAGAGC	0.473													54	114					5.52965e-18	7.49118e-18	0.003610	1	0
ABLIM1	3983	broad.mit.edu	37	10	116225525	116225525	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:116225525G>A	uc010qsg.1	-	12	1472	c.1373C>T	c.(1372-1374)TCC>TTC	p.S458F	ABLIM1_uc010qsh.1_Missense_Mutation_p.S426F|ABLIM1_uc010qsi.1_Missense_Mutation_p.S398F|ABLIM1_uc010qsk.1_Missense_Mutation_p.S382F|ABLIM1_uc009xyp.2_Missense_Mutation_p.S420F|ABLIM1_uc010qsf.1_Missense_Mutation_p.S170F|ABLIM1_uc009xyn.2_Missense_Mutation_p.S109F|ABLIM1_uc010qsj.1_Missense_Mutation_p.S135F|ABLIM1_uc009xyo.2_Missense_Mutation_p.S306F	NM_002313	NP_002304	O14639	ABLM1_HUMAN	actin-binding LIM protein 1 isoform a	458					axon guidance|cytoskeleton organization|organ morphogenesis|visual perception	actin cytoskeleton|cytoplasm	actin binding|zinc ion binding			breast(1)	1		Colorectal(252;0.0373)|Breast(234;0.231)		Epithelial(162;0.0132)|all cancers(201;0.0383)		GTACACAGGGGAGTTGATGGA	0.547													30	134					0	0	0.001786	0	0
PDZD8	118987	broad.mit.edu	37	10	119049715	119049715	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:119049715G>A	uc001lde.1	-	4	1442	c.1243C>T	c.(1243-1245)CGA>TGA	p.R415*		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	415	PDZ.				intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		GCGATAAGTCGATCTCCCCGC	0.428													25	69					0	0	0.004656	0	0
PLEKHA1	59338	broad.mit.edu	37	10	124189307	124189307	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:124189307C>T	uc001lge.1	+	12	1191	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	PLEKHA1_uc001lgf.1_3'UTR|PLEKHA1_uc001lgg.1_Silent_p.F356F	NM_001001974	NP_001001974	Q9HB21	PKHA1_HUMAN	pleckstrin homology domain containing, family A	356					B cell receptor signaling pathway|cellular response to hydrogen peroxide|establishment of protein localization|negative regulation of protein kinase B signaling cascade|phosphatidylinositol 3-kinase cascade|ruffle organization	cytoplasm|nucleus|ruffle membrane	PDZ domain binding|phosphatidylinositol-3,4-bisphosphate binding			kidney(1)	1		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CAGGGAACTTCAAGGTCCAGA	0.473													17	60					0	0	0.006122	0	0
CPXM2	119587	broad.mit.edu	37	10	125622149	125622149	+	Missense_Mutation	SNP	C	T	T	rs144190123	by1000genomes	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:125622149C>T	uc001lhk.1	-	3	819	c.494G>A	c.(493-495)CGA>CAA	p.R165Q	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	165	F5/8 type C.				cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		GAGTCTCCCTCGATGTGCCCC	0.483													9	29					0	0	0.001855	0	0
KNDC1	85442	broad.mit.edu	37	10	135025336	135025336	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:135025336C>T	uc001llz.1	+	23	4211	c.4210C>T	c.(4210-4212)CTC>TTC	p.L1404F		NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	1404					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		CTGTAAGAGGCTCTCAGAGGA	0.652													7	34					0	0	0.001984	0	0
ATHL1	80162	broad.mit.edu	37	11	293704	293704	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:293704C>T	uc010qvu.1	+	10	1706	c.1591C>T	c.(1591-1593)CCC>TCC	p.P531S	ATHL1_uc001lor.3_Missense_Mutation_p.P283S|ATHL1_uc001lou.3_Missense_Mutation_p.P106S|ATHL1_uc001lov.3_5'Flank	NM_025092	NP_079368	Q32M88	ATHL1_HUMAN	ATH1, acid trehalase-like 1	531					carbohydrate metabolic process		hydrolase activity, acting on glycosyl bonds			liver(1)|central_nervous_system(1)|skin(1)	3		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.38e-28)|Epithelial(43;3.25e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		TGTGACGTCCCCCCAGGGCCC	0.622													47	89					0	0	0.003610	0	0
SLC22A18	5002	broad.mit.edu	37	11	2924639	2924639	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:2924639C>T	uc001lwx.2	+	2	282	c.64C>T	c.(64-66)CGG>TGG	p.R22W	SLC22A18AS_uc001lwv.3_Intron|SLC22A18AS_uc001lww.3_Intron|SLC22A18_uc001lwy.2_Missense_Mutation_p.R22W|SLC22A18_uc001lwz.2_Missense_Mutation_p.R22W	NM_183233	NP_899056	Q96BI1	S22AI_HUMAN	tumor suppressing subtransferable candidate 5	22					excretion|organic cation transport	apical plasma membrane|cytoplasmic part|integral to membrane|nuclear envelope	drug:hydrogen antiporter activity|symporter activity|ubiquitin protein ligase binding			central_nervous_system(2)|ovary(1)	3		all_epithelial(84;0.000124)|Medulloblastoma(188;0.00106)|Breast(177;0.00328)|Ovarian(85;0.00556)|all_neural(188;0.00681)|all_lung(207;0.198)		BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.192)		CGCTCTAGGCCGGTCCTCGGT	0.642													88	428					0	0	0.003610	0	0
MMP26	56547	broad.mit.edu	37	11	5013258	5013258	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5013258G>A	uc001lzv.2	+	5	678	c.660G>A	c.(658-660)GGG>GGA	p.G220G		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	220					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		AGCACTCTGGGAATCAGAGCT	0.418													19	31					0	0	0.002299	0	0
OR52A1	23538	broad.mit.edu	37	11	5172693	5172693	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5172693G>A	uc010qyy.1	-	1	907	c.907C>T	c.(907-909)CGC>TGC	p.R303C		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	303	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACATGAATGCGAATCTGTGTG	0.358													19	122					0	0	0.002299	0	0
OR51V1	283111	broad.mit.edu	37	11	5221142	5221142	+	Silent	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5221142A>G	uc010qyz.1	-	1	789	c.789T>C	c.(787-789)CCT>CCC	p.P263P		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	263	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCTAATGATAGGGATGTAGA	0.478													13	69					0	0	0.001368	0	0
HBG1	3047	broad.mit.edu	37	11	5269643	5269643	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5269643G>A	uc001mah.1	-	3	443	c.390C>T	c.(388-390)TCC>TCT	p.S130S	HBG2_uc001mai.1_Silent_p.S130S	NM_000559	NP_000550	P69891	HBG1_HUMAN	A-gamma globin	130					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity|protein binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTTCTGCCAGGAAGCCTGCA	0.502													13	50					0	0	0.003163	0	0
OR51I1	390063	broad.mit.edu	37	11	5462097	5462097	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5462097G>A	uc010qze.1	-	1	648	c.648C>T	c.(646-648)ATC>ATT	p.I216I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGGAAAGCAGGATGAAAGTTG	0.458													5	36					0	0	0.000602	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537283	5537283	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5537283C>T	uc001maz.3	-	1	674	c.389G>A	c.(388-390)GGA>GAA	p.G130E	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	130										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		GCTGCTGTTTCCTTTGGTGTT	0.532													30	60					0	0	0.001786	0	0
OR52N4	390072	broad.mit.edu	37	11	5776576	5776576	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5776576G>A	uc001mbu.2	+	1	654	c.606G>A	c.(604-606)CTG>CTA	p.L202L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		TCTATGGTCTGATGGTTGCCC	0.493													15	78					0	0	0.004007	0	0
OR52E6	390078	broad.mit.edu	37	11	5862489	5862489	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:5862489G>A	uc010qzq.1	-	1	639	c.639C>T	c.(637-639)CTC>CTT	p.L213L	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAATAATAAGGAGCACATCCA	0.488													11	25					0	0	0.008291	0	0
OR52L1	338751	broad.mit.edu	37	11	6007836	6007836	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:6007836C>T	uc001mcd.2	-	1	380	c.325G>A	c.(325-327)GAG>AAG	p.E109K		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	109	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TACCCAATCTCGTGGGCATGA	0.537													9	16					0	0	0.008291	0	0
TRIM3	10612	broad.mit.edu	37	11	6477540	6477540	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:6477540G>A	uc001mdh.2	-	7	1803	c.1416C>T	c.(1414-1416)CTC>CTT	p.L472L	TRIM3_uc001mdi.2_Silent_p.L472L|TRIM3_uc010raj.1_Silent_p.L353L|TRIM3_uc009yfd.2_Silent_p.L472L|TRIM3_uc010rak.1_Silent_p.L472L|TRIM3_uc001mdj.2_Silent_p.L353L	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	472					nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACGGAAGACGAGCTCATCCT	0.607													26	44					0	0	0.005443	0	0
ZNF215	7762	broad.mit.edu	37	11	6977075	6977075	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:6977075C>T	uc001mey.2	+	7	1455	c.867C>T	c.(865-867)TTC>TTT	p.F289F	ZNF215_uc010raw.1_3'UTR|ZNF215_uc010rax.1_Silent_p.F51F|ZNF215_uc001mez.1_Intron	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	289					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		AAGAGGCTTTCATTCCTGAGA	0.363													38	86					0	0	0.006230	0	0
NLRP14	338323	broad.mit.edu	37	11	7064407	7064407	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:7064407G>A	uc001mfb.1	+	4	1473	c.1150G>A	c.(1150-1152)GAG>AAG	p.E384K		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	384	NACHT.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GCAGCAAATGGAGAAGGGTGG	0.468													55	106					0	0	0.003610	0	0
OR5P3	120066	broad.mit.edu	37	11	7847259	7847259	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:7847259C>T	uc010rbg.1	-	1	261	c.261G>A	c.(259-261)AGG>AGA	p.R87R		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGGTTTCTTTCCTTAGGAAGC	0.507													15	67					0	0	0.003163	0	0
OR10A3	26496	broad.mit.edu	37	11	7960551	7960551	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:7960551C>T	uc010rbi.1	-	1	517	c.517G>A	c.(517-519)GAA>AAA	p.E173K		NM_001003745	NP_001003745	P58181	O10A3_HUMAN	olfactory receptor, family 10, subfamily A,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGATTAATTTCATTGGGGCCA	0.413													10	38					0	0	0.001368	0	0
ABCC8	6833	broad.mit.edu	37	11	17418836	17418836	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:17418836C>T	uc001mnc.2	-	32	4018	c.3892G>A	c.(3892-3894)GTG>ATG	p.V1298M		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	1298	Cytoplasmic (By similarity).|ABC transmembrane type-1 2.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	AGGTTCCTCACCATCCAGTTG	0.587													46	114					0	0	0.003610	0	0
LDHA	3939	broad.mit.edu	37	11	18425337	18425337	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:18425337T>C	uc001mok.3	+	6	961	c.689T>C	c.(688-690)GTT>GCT	p.V230A	LDHA_uc010rdc.1_Missense_Mutation_p.V172A|LDHA_uc009yhn.2_Missense_Mutation_p.V229A|LDHA_uc009yho.2_Missense_Mutation_p.V57A|LDHA_uc001mol.3_Missense_Mutation_p.V230A|LDHA_uc010rdd.1_Missense_Mutation_p.V259A	NM_005566	NP_005557	P00338	LDHA_HUMAN	lactate dehydrogenase A isoform 1	230					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity|protein binding			central_nervous_system(3)	3					NADH(DB00157)	TGGAAAGAGGTTCACAAGCAG	0.353													23	26					0	0	0.003330	0	0
BBOX1	8424	broad.mit.edu	37	11	27147337	27147337	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:27147337G>A	uc001mre.1	+	8	1341	c.973G>A	c.(973-975)GAA>AAA	p.E325K	BBOX1_uc009yih.1_Missense_Mutation_p.E325K|BBOX1_uc001mrg.1_Missense_Mutation_p.E325K	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	325					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	GAACAGCAAAGAATCCAAGTT	0.239													5	41					0	0	0.003080	0	0
CD59	966	broad.mit.edu	37	11	33743976	33743976	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:33743976C>T	uc001mus.3	-	1	298	c.16G>A	c.(16-18)GGG>AGG	p.G6R	CD59_uc009yjx.2_Missense_Mutation_p.G6R|CD59_uc009yjy.2_Missense_Mutation_p.G6R|CD59_uc009yjz.2_Missense_Mutation_p.G6R|CD59_uc001mut.3_Missense_Mutation_p.G6R|CD59_uc009yka.2_Missense_Mutation_p.G6R|CD59_uc001muu.3_Missense_Mutation_p.G6R|CD59_uc001muv.3_Missense_Mutation_p.G6R|CD59_uc001mux.3_Missense_Mutation_p.G6R	NM_001127223	NP_001120695	P13987	CD59_HUMAN	CD59 antigen preproprotein	6					blood coagulation|cell surface receptor linked signaling pathway	anchored to external side of plasma membrane|extracellular region|membrane fraction					0						AGGACAGACCCTCCTTGGATT	0.522													7	54					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	11	43283947	43283947	+	RNA	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:43283947T>C	uc001mxe.1	-	2		c.989A>G								Homo sapiens cDNA FLJ44864 fis, clone BRALZ2013621, moderately similar to Heterogeneous nuclear ribonucleoprotein K.																		CACTCTGTGGTTCATAAGCCA	0.448													3	15					0	0	0.000248	0	0
KIAA0652	9776	broad.mit.edu	37	11	46689398	46689398	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:46689398C>T	uc009yld.2	+	14	1797	c.1113C>T	c.(1111-1113)GTC>GTT	p.V371V	KIAA0652_uc001nda.2_Silent_p.V404V|KIAA0652_uc001ndb.2_Silent_p.V371V|KIAA0652_uc001ncz.2_Silent_p.V334V|KIAA0652_uc001ndc.2_Silent_p.V334V|KIAA0652_uc010rgv.1_Silent_p.V255V	NM_001142673	NP_001136145	O75143	ATG13_HUMAN	autophagy-related protein 13 isoform 1	371					autophagic vacuole assembly	cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding				0				GBM - Glioblastoma multiforme(35;0.226)		CCATCTTTGTCCGAAAAGTGG	0.493													16	46					0	0	0.004990	0	0
OR4C3	256144	broad.mit.edu	37	11	48346903	48346903	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:48346903C>T	uc010rhv.1	+	1	411	c.411C>T	c.(409-411)ATC>ATT	p.I137I		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GTGTTGAGATCATTCTGCTCA	0.478													15	197					0	0	0.004289	0	0
OR4A47	403253	broad.mit.edu	37	11	48510356	48510356	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:48510356G>A	uc010rhx.1	+	1	12	c.12G>A	c.(10-12)AGG>AGA	p.R4R		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGGAGCCAAGGAAAAATGTGA	0.363													6	17					0	0	0.001168	0	0
OR4C12	283093	broad.mit.edu	37	11	50003119	50003119	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:50003119C>T	uc010ria.1	-	1	919	c.919G>A	c.(919-921)GAT>AAT	p.D307N		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TAATCATTATCTGAAGTCACT	0.373													15	22					0	0	0.003163	0	0
OR4C6	219432	broad.mit.edu	37	11	55433515	55433515	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:55433515G>A	uc001nht.3	+	3	1138	c.873G>A	c.(871-873)GAG>GAA	p.E291E	OR4C6_uc010rik.1_Silent_p.E291E	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GGAATGCAGAGGTGAAAAGTG	0.458													17	30					0	0	0.006122	0	0
OR5L1	219437	broad.mit.edu	37	11	55579578	55579578	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:55579578G>A	uc001nhw.1	+	1	636	c.636G>A	c.(634-636)ATG>ATA	p.M212I		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				TTACCATCATGATCATCCTCA	0.502													20	102					0	0	0.008871	0	0
OR8H3	390152	broad.mit.edu	37	11	55890498	55890498	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:55890498C>T	uc001nii.1	+	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					ATATCTGCATCCTATGTGTCC	0.433													12	98					0	0	0.001368	0	0
GLYATL2	219970	broad.mit.edu	37	11	58602019	58602019	+	Silent	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:58602019A>G	uc001nnd.3	-	6	899	c.768T>C	c.(766-768)TTT>TTC	p.F256F	GLYATL2_uc009ymq.2_Silent_p.F256F	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	256						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	CATGGAAATAAAATGGGATTT	0.398													20	43					0	0	0.001882	0	0
MS4A4A	51338	broad.mit.edu	37	11	60059813	60059813	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:60059813G>A	uc001noz.2	+	2	167	c.157G>A	c.(157-159)GGA>AGA	p.G53R	MS4A4A_uc001npa.2_Missense_Mutation_p.G34R|MS4A4A_uc001npb.2_Missense_Mutation_p.G34R|MS4A4A_uc001npc.2_Missense_Mutation_p.G34R	NM_148975	NP_683876	Q96JQ5	M4A4A_HUMAN	membrane-spanning 4-domains, subfamily A, member	53	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						TCTGTGGAAAGGATTGCAAGA	0.488													11	57					0	0	0.008291	0	0
SLC15A3	51296	broad.mit.edu	37	11	60708634	60708634	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:60708634C>T	uc001nqn.2	-	5	1470	c.1236G>A	c.(1234-1236)GCG>GCA	p.A412A	SLC15A3_uc001nqo.2_Intron	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	412	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						ACATCCCCAGCGCCATCTTCT	0.572													5	15					0	0	0.001168	0	0
FTH1	2495	broad.mit.edu	37	11	61732270	61732270	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:61732270C>T	uc001nsu.2	-	4	716	c.481G>A	c.(481-483)GCG>ACG	p.A161T		NM_002032	NP_002023	P02794	FRIH_HUMAN	ferritin, heavy polypeptide 1	161					cell proliferation|cellular membrane organization|immune response|intracellular sequestering of iron ion|iron ion transport|negative regulation of cell proliferation|post-Golgi vesicle-mediated transport	cytosol|intracellular ferritin complex	ferric iron binding|ferroxidase activity|protein binding			ovary(1)	1					Iron Dextran(DB00893)	GATTCGGGCGCTCCCATCTTG	0.498													9	50					0	0	0.006214	0	0
AHNAK	79026	broad.mit.edu	37	11	62298653	62298653	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:62298653G>A	uc001ntl.2	-	5	3536	c.3236C>T	c.(3235-3237)CCC>CTC	p.P1079L	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	1079					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TTTCATTTTGGGTCCTTTAAG	0.443													42	97					0	0	0.002522	0	0
SLC22A6	9356	broad.mit.edu	37	11	62747383	62747383	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:62747383C>T	uc001nwk.2	-	7	1382	c.1075G>A	c.(1075-1077)GAC>AAC	p.D359N	SLC22A6_uc001nwl.2_Missense_Mutation_p.D359N|SLC22A6_uc001nwj.2_Missense_Mutation_p.D359N|SLC22A6_uc001nwm.2_Missense_Mutation_p.D359N	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	359	Extracellular (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						CCCTGCAGGTCCATGACCAGC	0.433													9	48					0	0	0.001368	0	0
SLC22A8	9376	broad.mit.edu	37	11	62782326	62782326	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:62782326G>A	uc001nwo.2	-	2	241	c.105C>T	c.(103-105)AAC>AAT	p.N35N	SLC22A8_uc001nwp.2_Silent_p.N35N|SLC22A8_uc009yom.2_Intron|SLC22A8_uc010rmm.1_Intron|SLC22A8_uc009yon.2_Silent_p.N35N	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	35	Extracellular (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						TCTGCAGCAGGTTGTGGTTGG	0.617													83	140					0	0	0.003610	0	0
SLC22A25	387601	broad.mit.edu	37	11	62933703	62933703	+	Silent	SNP	G	A	A	rs138188942		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:62933703G>A	uc001nwr.1	-	7	1098	c.1098C>T	c.(1096-1098)GGC>GGT	p.G366G	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	366	Helical; Name=7; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						GCAAAGTAAGGCCCCAAAAAG	0.448													24	31					0	0	0.003954	0	0
NRXN2	9379	broad.mit.edu	37	11	64427939	64427939	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:64427939C>T	uc001oar.2	-	12	2693	c.2254G>A	c.(2254-2256)GAG>AAG	p.E752K	NRXN2_uc001oas.2_Missense_Mutation_p.E721K|NRXN2_uc001oaq.2_Missense_Mutation_p.E419K	NM_015080	NP_055895	P58401	NRX2B_HUMAN	neurexin 2 isoform alpha-1 precursor	Error:Variant_position_missing_in_P58401_after_alignment					cell adhesion	integral to membrane				upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)|ovary(2)|kidney(1)|pancreas(1)	10						TCCTCTGCCTCCGTGTGCATG	0.602													13	19					0	0	0.001855	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65715016	65715016	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:65715016G>A	uc001ogk.1	+	5	752	c.720G>A	c.(718-720)AGG>AGA	p.R240R	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_Intron	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	240											0						GCCCCAGGAGGGGGTCGATCT	0.632													10	90					0	0	0.001368	0	0
CD248	57124	broad.mit.edu	37	11	66083855	66083855	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:66083855T>C	uc001ohm.1	-	1	661	c.644A>G	c.(643-645)AAG>AGG	p.K215R		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	215	Sushi.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	CTCAGGCTGCTTCACGCAGAG	0.667													9	37					0	0	0.006214	0	0
NPAS4	266743	broad.mit.edu	37	11	66189622	66189622	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:66189622C>T	uc001ohx.1	+	2	383	c.207C>T	c.(205-207)CTC>CTT	p.L69L	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	69					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CGGGGCTTCTCTCAGCTCAAG	0.582											OREG0003368	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=NPAS4|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	18	41					0	0	0.007413	0	0
LRP5	4041	broad.mit.edu	37	11	68125199	68125199	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:68125199G>A	uc001ont.2	+	3	645	c.570G>A	c.(568-570)GTG>GTA	p.V190V	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	190	Beta-propeller 1.|LDL-receptor class B 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						AGATCATTGTGGACTCGGACA	0.602													14	20					0	0	0.003163	0	0
CPT1A	1374	broad.mit.edu	37	11	68552315	68552315	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:68552315C>T	uc001oog.3	-	10	1301	c.1131G>A	c.(1129-1131)GAG>GAA	p.E377E	CPT1A_uc001oof.3_Silent_p.E377E|CPT1A_uc009ysj.2_Intron	NM_001876	NP_001867	P50416	CPT1A_HUMAN	carnitine palmitoyltransferase 1A liver isoform	377	Cytoplasmic (Potential).				carnitine shuttle|fatty acid beta-oxidation	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			skin(2)	2	Esophageal squamous(3;3.28e-14)		LUAD - Lung adenocarcinoma(13;0.0676)|STAD - Stomach adenocarcinoma(18;0.142)		L-Carnitine(DB00583)|Perhexiline(DB01074)	CCAGCCTGGCCTCCCCGGGCT	0.652													19	49					0	0	0.001523	0	0
PPFIA1	8500	broad.mit.edu	37	11	70208214	70208214	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:70208214G>A	uc001opo.2	+	20	2794	c.2596G>A	c.(2596-2598)GAG>AAG	p.E866K	PPFIA1_uc001opn.1_Missense_Mutation_p.E866K|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opr.2_5'UTR	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	866	Potential.			E -> G (in Ref. 3; AAH34046).	cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			TGAATTGCTGGAGGAAGCCCG	0.338													30	79					0	0	0.002836	0	0
NUMA1	4926	broad.mit.edu	37	11	71724032	71724032	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:71724032T>C	uc001orl.1	-	15	4689	c.4517A>G	c.(4516-4518)GAG>GGG	p.E1506G	NUMA1_uc009ysw.1_Missense_Mutation_p.E1069G|NUMA1_uc001ork.1_Intron|NUMA1_uc001orm.1_Missense_Mutation_p.E1506G|NUMA1_uc001orn.2_Missense_Mutation_p.E1069G|NUMA1_uc009ysx.1_Missense_Mutation_p.E1506G|NUMA1_uc001oro.1_Missense_Mutation_p.E1506G	NM_006185	NP_006176	Q14980	NUMA1_HUMAN	nuclear mitotic apparatus protein 1	1506	Potential.				G2/M transition of mitotic cell cycle|mitotic anaphase|nucleus organization	chromosome|cytosol|nucleoplasm|spindle microtubule|spindle pole	protein binding|structural molecule activity			ovary(3)|lung(2)|skin(2)|central_nervous_system(1)	8						AGTCATCACCTCCAGCTCCCG	0.592			T	RARA	APL								24	40					0	0	0.003954	0	0
C2CD3	26005	broad.mit.edu	37	11	73824918	73824918	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:73824918G>A	uc001ouu.2	-	11	1977	c.1750C>T	c.(1750-1752)CAC>TAC	p.H584Y	C2CD3_uc001ouv.2_Missense_Mutation_p.H584Y	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	584						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					ACAGGAAAGTGATATTCTACA	0.353													18	47					0	0	0.007413	0	0
C11orf82	220042	broad.mit.edu	37	11	82643115	82643115	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:82643115C>T	uc001ozt.2	+	6	979	c.735C>T	c.(733-735)TTC>TTT	p.F245F	C11orf82_uc010rsr.1_5'UTR|C11orf82_uc010rss.1_5'UTR|C11orf82_uc009yvd.2_Intron	NM_145018	NP_659455	Q8IXT1	NOXIN_HUMAN	nitric oxide-inducible gene protein	245					apoptosis|cell cycle arrest	cytoplasm|nucleus				ovary(2)	2						CACTTGAATTCACTTGCATTG	0.388													34	80					0	0	0.003755	0	0
FAT3	120114	broad.mit.edu	37	11	92532555	92532555	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:92532555G>A	uc001pdj.3	+	9	6393	c.6376G>A	c.(6376-6378)GAC>AAC	p.D2126N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2126	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTGCAGGATGACTATGGCCA	0.428										TCGA Ovarian(4;0.039)			158	477					0	0	0.003610	0	0
MAML2	84441	broad.mit.edu	37	11	95712443	95712443	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:95712443A>G	uc001pfw.1	-	5	4425	c.3140T>C	c.(3139-3141)CTG>CCG	p.L1047P		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	1047					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				TCTGAGATTCAGACCCCTGAG	0.498			T	MECT1|CRTC3	salivary gland mucoepidermoid								15	37					0	0	0.004007	0	0
TRPC6	7225	broad.mit.edu	37	11	101353770	101353770	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:101353770C>T	uc001pgk.3	-	5	1845	c.1420G>A	c.(1420-1422)GAA>AAA	p.E474K	TRPC6_uc009ywy.2_Missense_Mutation_p.E358K|TRPC6_uc009ywz.1_Missense_Mutation_p.E419K	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	474	Extracellular (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		GTGCTGGTTTCATTAGGAAGG	0.433													28	67					0	0	0.005443	0	0
CASP5	838	broad.mit.edu	37	11	104871020	104871020	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:104871020G>A	uc010rva.1	-	6	952	c.920C>T	c.(919-921)CCC>CTC	p.P307L	CASP5_uc010ruz.1_Missense_Mutation_p.P320L|CASP5_uc010rvb.1_Missense_Mutation_p.P249L|CASP5_uc010rvc.1_Missense_Mutation_p.P165L|CASP5_uc009yxh.2_Missense_Mutation_p.P89L|CASP5_uc010rvd.1_Missense_Mutation_p.P89L	NM_004347	NP_004338	P51878	CASP5_HUMAN	caspase 5 isoform a precursor	307					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			ovary(2)|lung(1)	3		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		GATGACCTTGGGTTTGTCCTT	0.453													48	123					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	11	113660223	113660223	+	RNA	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:113660223A>G	uc001pof.1	+	1		c.271A>G								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		GGCCAGGTGAAGAACCCCGGC	0.617													4	25					0	0	0.001168	0	0
CEP164	22897	broad.mit.edu	37	11	117253607	117253607	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:117253607A>T	uc001prc.2	+	14	1820	c.1673A>T	c.(1672-1674)GAT>GTT	p.D558V	CEP164_uc001prb.2_Missense_Mutation_p.D561V|CEP164_uc010rxk.1_Missense_Mutation_p.D532V|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA|CEP164_uc001prg.1_5'Flank	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	558	Glu-rich.				cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		GAGGCAGAGGATCCTGAGGAG	0.647													17	38					0	0	0.004007	0	0
DSCAML1	57453	broad.mit.edu	37	11	117310610	117310611	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:117310610_117310611GG>AA	uc001prh.1	-	22	4086_4087	c.4084_4085CC>TT	c.(4084-4086)CCT>TTT	p.P1362F		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1302	Extracellular (Potential).|Ig-like C2-type 10.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TTTCATCCAAGGTGTTGTCACG	0.564													50	99					0	0	0.004672	0	0
PVRL1	5818	broad.mit.edu	37	11	119545951	119545951	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:119545951G>A	uc001pwv.2	-	5	1093	c.921C>T	c.(919-921)AAC>AAT	p.N307N	PVRL1_uc001pwu.1_Silent_p.N307N|PVRL1_uc001pww.2_Silent_p.N307N	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	307	Extracellular (Potential).|Ig-like C2-type 2.				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		CCAGGCTGTAGTTGATGGGTC	0.572													24	73					0	0	0.002780	0	0
OR8D4	338662	broad.mit.edu	37	11	123777788	123777788	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:123777788C>T	uc010saa.1	+	1	650	c.650C>T	c.(649-651)TCA>TTA	p.S217L		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		ATCATTATTTCATATGCTTTT	0.428													32	84					0	0	0.002445	0	0
OR10S1	219873	broad.mit.edu	37	11	123848078	123848078	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:123848078G>A	uc001pzm.1	-	1	321	c.321C>T	c.(319-321)TCC>TCT	p.S107S		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	107	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		AGCCCTCAAAGGAGATCACCT	0.542													10	24					0	0	0.001368	0	0
ROBO3	64221	broad.mit.edu	37	11	124739925	124739925	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:124739925G>A	uc001qbc.2	+	4	919	c.727G>A	c.(727-729)GGA>AGA	p.G243R		NM_022370	NP_071765	Q96MS0	ROBO3_HUMAN	roundabout, axon guidance receptor, homolog 3	243	Ig-like C2-type 2.|Extracellular (Potential).				axon midline choice point recognition	integral to membrane	receptor activity			breast(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|Breast(109;0.0481)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0296)		CAACATGGCGGGAGAACGGGA	0.522													9	29					0	0	0.006214	0	0
APLP2	334	broad.mit.edu	37	11	130011963	130011963	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:130011963C>T	uc010sby.1	+	17	2341	c.2184C>T	c.(2182-2184)ATC>ATT	p.I728I	APLP2_uc001qfp.2_Silent_p.I716I|APLP2_uc001qfq.2_Silent_p.I660I|APLP2_uc010sbz.1_Silent_p.I516I|APLP2_uc001qfr.2_Silent_p.I482I|APLP2_uc001qfs.2_Silent_p.I487I|APLP2_uc001qfv.2_Silent_p.I619I|APLP2_uc009zcv.2_Silent_p.I76I	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	728	Cytoplasmic (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		GCCACGGGATCGTGGAGGTGA	0.592													12	19					0	0	0.001368	0	0
GLB1L2	89944	broad.mit.edu	37	11	134212753	134212753	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:134212753C>T	uc001qhp.2	+	2	380	c.192C>T	c.(190-192)TTC>TTT	p.F64F		NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	64					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		TCTGGATCTTCGGGGGCTCCA	0.617													11	83					0	0	0.000978	0	0
B3GAT1	27087	broad.mit.edu	37	11	134257506	134257506	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:134257506G>A	uc001qhq.2	-	3	309	c.48C>T	c.(46-48)CCC>CCT	p.P16P	B3GAT1_uc001qhr.2_Silent_p.P16P|B3GAT1_uc010scv.1_Silent_p.P29P	NM_018644	NP_061114	Q9P2W7	B3GA1_HUMAN	beta-1,3-glucuronyltransferase 1	16	Helical; Signal-anchor for type II membrane protein; (Potential).				carbohydrate metabolic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(1)	1	all_hematologic(175;0.127)	all_cancers(12;1.39e-23)|all_epithelial(12;7.17e-17)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|Medulloblastoma(222;0.0125)|all_neural(223;0.0137)|Esophageal squamous(93;0.0559)		Epithelial(10;2.58e-11)|all cancers(11;5.75e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.000879)|Lung(977;0.0864)		GCAGAGTCCAGGGCAGCACGA	0.627													19	62					0	0	0.002299	0	0
LRTM2	654429	broad.mit.edu	37	12	1943507	1943507	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:1943507G>A	uc001qjt.2	+	5	1539	c.733G>A	c.(733-735)GAG>AAG	p.E245K	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.E245K|LRTM2_uc010sdx.1_Missense_Mutation_p.E245K|LRTM2_uc001qjv.2_Missense_Mutation_p.E7K	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	245	LRRCT.|Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			GGTCCCCATGGAGATGTTCAA	0.592													16	54					0	0	0.004990	0	0
CACNA1C	775	broad.mit.edu	37	12	2787022	2787022	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:2787022G>A	uc009zdu.1	+	43	5537	c.5224G>A	c.(5224-5226)GAC>AAC	p.D1742N	CACNA1C_uc009zdv.1_Missense_Mutation_p.D1691N|CACNA1C_uc001qkb.2_Missense_Mutation_p.D1694N|CACNA1C_uc001qkc.2_Missense_Mutation_p.D1713N|CACNA1C_uc001qke.2_Missense_Mutation_p.D1683N|CACNA1C_uc001qkf.2_Missense_Mutation_p.D1702N|CACNA1C_uc001qjz.2_Missense_Mutation_p.D1694N|CACNA1C_uc001qkd.2_Missense_Mutation_p.D1713N|CACNA1C_uc001qkg.2_Missense_Mutation_p.D1700N|CACNA1C_uc009zdw.1_Missense_Mutation_p.D1735N|CACNA1C_uc001qkh.2_Missense_Mutation_p.D1702N|CACNA1C_uc001qkl.2_Missense_Mutation_p.D1742N|CACNA1C_uc001qkn.2_Missense_Mutation_p.D1694N|CACNA1C_uc001qko.2_Missense_Mutation_p.D1714N|CACNA1C_uc001qkp.2_Missense_Mutation_p.D1694N|CACNA1C_uc001qkr.2_Missense_Mutation_p.D1711N|CACNA1C_uc001qku.2_Missense_Mutation_p.D1694N|CACNA1C_uc001qkq.2_Missense_Mutation_p.D1722N|CACNA1C_uc001qks.2_Missense_Mutation_p.D1694N|CACNA1C_uc001qkt.2_Missense_Mutation_p.D1713N|CACNA1C_uc001qki.1_Missense_Mutation_p.D1430N|CACNA1C_uc001qkj.1_Missense_Mutation_p.D1430N|CACNA1C_uc001qkk.1_Missense_Mutation_p.D1430N|CACNA1C_uc001qkm.1_Missense_Mutation_p.D1419N|CACNA1C_uc010sea.1_Missense_Mutation_p.D385N|uc001qkx.1_RNA|CACNA1C_uc001qky.1_Missense_Mutation_p.D12N	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1742	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	TTCTGAAGATGACATCTTCAG	0.592													32	73					0	0	0.003755	0	0
KCNA6	3742	broad.mit.edu	37	12	4919429	4919430	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:4919429_4919430CC>TT	uc001qng.2	+	1	1088_1089	c.222_223CC>TT	c.(220-225)GTCCGC>GTTTGC	p.R75C		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	75						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						GCCGGCGAGTCCGCTTCTTCGA	0.629										HNSCC(72;0.22)			25	65					0	0	0.004672	0	0
KCNA5	3741	broad.mit.edu	37	12	5155058	5155058	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:5155058C>T	uc001qni.2	+	1	1974	c.1745C>T	c.(1744-1746)CCC>CTC	p.P582L		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	582						Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						GGCAGCTGCCCCCTAGAGAAG	0.602													19	41					0	0	0.006122	0	0
LAG3	3902	broad.mit.edu	37	12	6886536	6886536	+	Silent	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:6886536A>G	uc001qqt.3	+	6	1513	c.1164A>G	c.(1162-1164)CCA>CCG	p.P388P	LAG3_uc001qqu.2_Silent_p.P218P	NM_002286	NP_002277	P18627	LAG3_HUMAN	lymphocyte-activation protein 3 precursor	388	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane	antigen binding|MHC class II protein binding				0						TGGACACCCCATCCCAGAGGA	0.577													47	102					0	0	0.003610	0	0
GNB3	2784	broad.mit.edu	37	12	6954844	6954844	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:6954844C>T	uc001qrd.2	+	10	1199	c.794C>T	c.(793-795)TCC>TTC	p.S265F	GNB3_uc001qrc.2_Missense_Mutation_p.S221F|GNB3_uc009zfe.2_Missense_Mutation_p.S264F|CDCA3_uc001qre.2_3'UTR|uc001qrf.1_RNA	NM_002075	NP_002066	P16520	GBB3_HUMAN	guanine nucleotide-binding protein, beta-3	265					cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|regulation of blood pressure|synaptic transmission	plasma membrane	GTPase activity|GTPase binding|signal transducer activity				0						ATCTGCTTCTCCCACGAGAGC	0.597													62	150					0	0	0.003610	0	0
CD163	9332	broad.mit.edu	37	12	7637841	7637841	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:7637841G>A	uc001qsz.3	-	11	2758	c.2630C>T	c.(2629-2631)CCT>CTT	p.P877L	CD163_uc001qta.3_Missense_Mutation_p.P877L|CD163_uc009zfw.2_Missense_Mutation_p.P910L	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	877	SRCR 8.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TAAAGATGCAGGGTTGATTTT	0.532													41	81					0	0	0.002222	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891276	18891277	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:18891276_18891277GG>AA	uc001rdy.2	+	1	232_233	c.74_75GG>AA	c.(73-75)GGG>GAA	p.G25E	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	25					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GCCCCTCCAGGGGAATTTGTAA	0.46													36	83					0	0	0.004672	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891529	18891529	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:18891529C>T	uc001rdy.2	+	1	485	c.327C>T	c.(325-327)ATC>ATT	p.I109I	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	109					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GTCATGGTATCATTCAGAATG	0.388													21	37					0	0	0.001523	0	0
SLCO1B3	28234	broad.mit.edu	37	12	21008007	21008007	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:21008007G>A	uc001rek.2	+	3	256	c.130G>A	c.(130-132)GGT>AGT	p.G44S	SLCO1B3_uc001rel.2_Missense_Mutation_p.G44S|SLCO1B3_uc010sil.1_Missense_Mutation_p.G44S|LST-3TM12_uc010sim.1_Missense_Mutation_p.G44S	NM_019844	NP_062818	Q9NPD5	SO1B3_HUMAN	solute carrier organic anion transporter family,	44	Helical; Name=1; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	basolateral plasma membrane|cytoplasm|integral to plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(2)|ovary(1)|skin(1)	4	Esophageal squamous(101;0.149)					TAAAGCACTAGGTGGAATCAT	0.318													18	25					0	0	0.001523	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21446932	21446932	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:21446932G>A	uc001rer.2	-	10	1635	c.1384C>T	c.(1384-1386)CTG>TTG	p.L462L	SLCO1A2_uc001res.2_Silent_p.L462L|SLCO1A2_uc010siq.1_Silent_p.L330L|SLCO1A2_uc010sio.1_Silent_p.L330L|SLCO1A2_uc010sip.1_Silent_p.L330L|SLCO1A2_uc001ret.2_Silent_p.L460L	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	462	Extracellular (Potential).|Kazal-like.				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CAAGCTGACAGATATGACAAG	0.388													11	22					0	0	0.001855	0	0
GYS2	2998	broad.mit.edu	37	12	21733319	21733319	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:21733319G>A	uc001rfb.2	-	2	515	c.260C>T	c.(259-261)GCT>GTT	p.A87V		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	87					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						TCTTCTGACAGCATCATTTAC	0.413													60	176					0	0	0.003610	0	0
CNTN1	1272	broad.mit.edu	37	12	41337963	41337963	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:41337963G>A	uc001rmm.1	+	14	1787	c.1674G>A	c.(1672-1674)AGG>AGA	p.R558R	CNTN1_uc009zjy.1_Silent_p.R558R|CNTN1_uc001rmn.1_Silent_p.R547R|CNTN1_uc001rmo.2_Silent_p.R558R	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	558	Ig-like C2-type 6.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				ACTACCAGAGGAATTTTATGG	0.353													10	52					0	0	0.000978	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43769292	43769292	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:43769292G>A	uc010skx.1	-	36	5336	c.5336C>T	c.(5335-5337)CCT>CTT	p.P1779L		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1779	GON.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		CCCATTAAAAGGACATTGATA	0.363													24	116					0	0	0.006320	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459020	45459020	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:45459020C>T	uc001rol.2	-	1		c.175G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TTAAAGAAATCCTCAAAGTCC	0.448													10	19					0	0	0.006214	0	0
FMNL3	91010	broad.mit.edu	37	12	50045849	50045849	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:50045849G>A	uc001ruv.1	-	14	1704	c.1470C>T	c.(1468-1470)GGC>GGT	p.G490G	FMNL3_uc001ruw.1_Silent_p.G439G|FMNL3_uc001rut.1_Silent_p.G56G|FMNL3_uc001ruu.1_Silent_p.G340G	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	490					actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						GCTCTGCAGGGCCTACTCTGG	0.617													12	18					0	0	0.001368	0	0
KRT5	3852	broad.mit.edu	37	12	52910933	52910933	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:52910933C>T	uc001san.2	-	6	1339	c.1176G>A	c.(1174-1176)ATG>ATA	p.M392I	KRT5_uc009zmh.2_Missense_Mutation_p.M392I	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	392	Rod.|Coil 2.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCTCTGGATCATCCGGTTCA	0.522													43	132					0	0	0.007835	0	0
SDR9C7	121214	broad.mit.edu	37	12	57317656	57317656	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:57317656G>A	uc010sqw.1	-	4	903	c.903C>T	c.(901-903)ATC>ATT	p.I301I		NM_148897	NP_683695	Q8NEX9	DR9C7_HUMAN	short chain dehydrogenase/reductase family 9C,	301						cytoplasm	binding|oxidoreductase activity			central_nervous_system(1)	1						ACCGGCTTAGGATGAAATCTG	0.577													17	74					0	0	0.004990	0	0
WIF1	11197	broad.mit.edu	37	12	65460471	65460471	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:65460471G>A	uc001ssk.2	-	6	825	c.680C>T	c.(679-681)CCT>CTT	p.P227L		NM_007191	NP_009122	Q9Y5W5	WIF1_HUMAN	WNT inhibitory factor 1 precursor	227	EGF-like 2.				multicellular organismal development|Wnt receptor signaling pathway	extracellular region	protein tyrosine kinase activity			ovary(2)|lung(1)|skin(1)	4			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.0231)		GCAGAAACCAGGAGTCACACA	0.408			T	HMGA2	pleomorphic salivary gland adenoma								12	46					0	0	0.001368	0	0
MSRB3	253827	broad.mit.edu	37	12	65847568	65847568	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:65847568C>T	uc001ssn.2	+	5	435	c.374C>T	c.(373-375)TCC>TTC	p.S125F	MSRB3_uc001ssm.2_Missense_Mutation_p.S118F|MSRB3_uc009zqp.2_Missense_Mutation_p.S118F	NM_198080	NP_932346	Q8IXL7	MSRB3_HUMAN	methionine sulfoxide reductase B3 isoform 1	125					protein repair	endoplasmic reticulum|mitochondrion	peptide-methionine-(S)-S-oxide reductase activity|protein-methionine-R-oxide reductase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2			LUAD - Lung adenocarcinoma(6;0.0234)|LUSC - Lung squamous cell carcinoma(43;0.0975)	GBM - Glioblastoma multiforme(28;0.131)		GATGACTTTTCCTATGGGATG	0.458													29	92					0	0	0.002096	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85517990	85517990	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:85517990C>T	uc001tac.2	+	17	3811	c.3700C>T	c.(3700-3702)CAT>TAT	p.H1234Y	LRRIQ1_uc001tab.1_Missense_Mutation_p.H1234Y	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1234										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		CCAGAAAAATCATTTGGCCCC	0.423													21	54					0	0	0.002299	0	0
C12orf12	196477	broad.mit.edu	37	12	91348192	91348192	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:91348192G>A	uc001tbj.2	-	1	762	c.328C>T	c.(328-330)CGG>TGG	p.R110W		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	110										central_nervous_system(1)|pancreas(1)	2						CCATACACCCGAAACACTTGC	0.647													10	33					0	0	0.006214	0	0
DCN	1634	broad.mit.edu	37	12	91545456	91545456	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:91545456C>T	uc001tbs.2	-	6	954	c.860G>A	c.(859-861)GGG>GAG	p.G287E	DCN_uc001tbo.2_Missense_Mutation_p.G178E|DCN_uc001tbp.2_Missense_Mutation_p.G140E|DCN_uc001tbq.2_Intron|DCN_uc001tbr.2_Intron|DCN_uc001tbt.2_Missense_Mutation_p.G287E|DCN_uc001tbu.2_Missense_Mutation_p.G287E	NM_133503	NP_598010	P07585	PGS2_HUMAN	decorin isoform a preproprotein	287	LRR 10.				organ morphogenesis	extracellular space				central_nervous_system(2)|ovary(1)|lung(1)	4						CTCTGCCAGCCCACCAGGTAC	0.502													17	31					0	0	0.006122	0	0
C12orf74	338809	broad.mit.edu	37	12	93100576	93100576	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:93100576C>T	uc001tch.1	+	2	399	c.169C>T	c.(169-171)CGT>TGT	p.R57C	C12orf74_uc001tci.2_Missense_Mutation_p.R57C	NM_001037671	NP_001032760	Q32Q52	CL074_HUMAN	hypothetical protein LOC338809	57											0						ATTAAGGACCCGTGGCTGTGG	0.622													31	67					0	0	0.002445	0	0
WSCD2	9671	broad.mit.edu	37	12	108589750	108589750	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:108589750G>A	uc001tms.2	+	2	885	c.141G>A	c.(139-141)GGG>GGA	p.G47G	WSCD2_uc001tmt.2_Silent_p.G47G	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	47						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						CTGTCTCGGGGAACCAGGCGA	0.612													56	168					0	0	0.003610	0	0
ATXN2	6311	broad.mit.edu	37	12	111951327	111951327	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:111951327G>A	uc001tsj.2	-	11	2034	c.1872C>T	c.(1870-1872)TCC>TCT	p.S624S	ATXN2_uc001tsh.2_Silent_p.S359S|ATXN2_uc001tsi.2_Silent_p.S335S|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Silent_p.S359S	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	624	Pro-rich.				cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						GGGCCTTTGGGGACATCCTTG	0.423													12	26					0	0	0.001855	0	0
ACAD10	80724	broad.mit.edu	37	12	112193538	112193538	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:112193538C>T	uc001tsq.2	+	20	3228	c.3028C>T	c.(3028-3030)CGT>TGT	p.R1010C	ACAD10_uc009zvx.2_Missense_Mutation_p.R1041C|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	1010							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						AGTGATTGATCGTGCGATTCA	0.507													49	100					0	0	0.003610	0	0
KSR2	283455	broad.mit.edu	37	12	118198936	118198936	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:118198936C>T	uc001two.2	-	4	834	c.779G>A	c.(778-780)GGG>GAG	p.G260E		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	289	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGGTGGGGTCCCCGGGGGCTT	0.677													127	391					0	0	0.003610	0	0
P2RX7	5027	broad.mit.edu	37	12	121614989	121614989	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:121614989G>A	uc001tzm.2	+	10	1108	c.1012G>A	c.(1012-1014)GGC>AGC	p.G338S	P2RX7_uc001tzn.2_Missense_Mutation_p.G248S|P2RX7_uc001tzo.2_RNA|P2RX7_uc001tzp.2_Missense_Mutation_p.G49S|P2RX7_uc001tzq.2_Missense_Mutation_p.G168S	NM_002562	NP_002553	Q99572	P2RX7_HUMAN	purinergic receptor P2X7	338						integral to membrane	ATP binding|ion channel activity|receptor activity			large_intestine(2)|lung(1)|breast(1)|skin(1)	5	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGTGTACATCGGCTCAACCCT	0.443													192	512					0	0	0.003610	0	0
CCDC92	80212	broad.mit.edu	37	12	124421944	124421944	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:124421944T>G	uc001ufw.1	-	5	804	c.657A>C	c.(655-657)GAA>GAC	p.E219D	CCDC92_uc001ufv.1_Missense_Mutation_p.E202D|CCDC92_uc001ufx.1_Missense_Mutation_p.E219D|CCDC92_uc001ufy.1_Missense_Mutation_p.E202D	NM_025140	NP_079416	Q53HC0	CCD92_HUMAN	coiled-coil domain containing 92	219											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.0002)|OV - Ovarian serous cystadenocarcinoma(86;0.000222)|all cancers(50;0.00129)|BRCA - Breast invasive adenocarcinoma(302;0.242)		TGTAGACCTCTTCAAATTCCG	0.597													36	73					0	0	0.003755	0	0
NCOR2	9612	broad.mit.edu	37	12	124825290	124825290	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:124825290G>A	uc010tba.1	-	35	5337	c.5220C>T	c.(5218-5220)ATC>ATT	p.I1740I	NCOR2_uc010tay.1_Silent_p.I1739I|NCOR2_uc010taz.1_Silent_p.I1723I|NCOR2_uc010tbb.1_Silent_p.I1732I|NCOR2_uc010tbc.1_Silent_p.I1722I|NCOR2_uc010tax.1_5'Flank	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	1740					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GGGACAGGTCGATGATGCCTG	0.697													5	12					0	0	0.001168	0	0
TMEM132D	121256	broad.mit.edu	37	12	129566350	129566350	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:129566350C>T	uc009zyl.1	-	7	2205	c.1877G>A	c.(1876-1878)GGC>GAC	p.G626D	TMEM132D_uc001uia.2_Missense_Mutation_p.G164D	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	626	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		GATCTGTCCGCCTTGCAGCTT	0.522													27	42					0	0	0.001786	0	0
FLT3	2322	broad.mit.edu	37	13	28589742	28589742	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:28589742C>T	uc001urw.2	-	21	2720	c.2638G>A	c.(2638-2640)GAA>AAA	p.E880K	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.E839K	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	880	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	GAGAAGATTTCCCACAGTAAT	0.547			Mis|O		AML|ALL								30	92					0	0	0.008361	0	0
ALOX5AP	241	broad.mit.edu	37	13	31338174	31338174	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:31338174C>T	uc001utf.1	+	5	491	c.417C>T	c.(415-417)TTC>TTT	p.F139F	ALOX5AP_uc010tdr.1_Silent_p.F196F	NM_001629	NP_001620	P20292	AL5AP_HUMAN	arachidonate 5-lipoxygenase-activating protein	139	Lumenal.				cellular response to calcium ion|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|protein homotrimerization	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear membrane	arachidonic acid binding|protein N-terminus binding				0		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0187)|Epithelial(112;0.0803)|OV - Ovarian serous cystadenocarcinoma(117;0.0864)		TCTTCTTTTTCGGAAGTGACT	0.448													38	121					0	0	0.005524	0	0
CCNA1	8900	broad.mit.edu	37	13	37012209	37012209	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:37012209C>T	uc001uvr.3	+	4	900	c.550C>T	c.(550-552)CCT>TCT	p.P184S	CCNA1_uc010teo.1_Missense_Mutation_p.P140S|CCNA1_uc010abq.2_Missense_Mutation_p.P140S|CCNA1_uc010abp.2_Missense_Mutation_p.P140S|CCNA1_uc001uvs.3_Missense_Mutation_p.P183S|CCNA1_uc010abr.2_Intron	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	184					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		TGCAGTTTCCCCTATGCTGGT	0.373													45	144					0	0	0.003610	0	0
CCNA1	8900	broad.mit.edu	37	13	37014168	37014168	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:37014168G>A	uc001uvr.3	+	6	1296	c.946G>A	c.(946-948)GAT>AAT	p.D316N	CCNA1_uc010teo.1_Missense_Mutation_p.D272N|CCNA1_uc010abq.2_Missense_Mutation_p.D272N|CCNA1_uc010abp.2_Missense_Mutation_p.D272N|CCNA1_uc001uvs.3_Missense_Mutation_p.D315N|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	316					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CTATATCACCGATGATACATA	0.383													38	65					0	0	0.006230	0	0
FREM2	341640	broad.mit.edu	37	13	39263503	39263503	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:39263503C>T	uc001uwv.2	+	1	2331	c.2022C>T	c.(2020-2022)GTC>GTT	p.V674V		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	674	CSPG 3.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CATTTAGAGTCCAGGATAACC	0.562													35	90					0	0	0.004289	0	0
KBTBD6	89890	broad.mit.edu	37	13	41705387	41705387	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:41705387G>A	uc001uxu.1	-	1	1550	c.1261C>T	c.(1261-1263)CGC>TGC	p.R421C	KBTBD6_uc010ace.1_Intron|KBTBD6_uc010tfe.1_Missense_Mutation_p.R355C|uc001uxv.1_5'Flank	NM_152903	NP_690867	Q86V97	KBTB6_HUMAN	kelch repeat and BTB (POZ) domain-containing 6	421	Kelch 1.						protein binding			ovary(1)|skin(1)	2		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;4.08e-09)|Epithelial(112;4.74e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000131)|GBM - Glioblastoma multiforme(144;0.000876)|BRCA - Breast invasive adenocarcinoma(63;0.0673)		CACAGCAAGCGATCTGCAAGT	0.488													40	92					0	0	0.007835	0	0
KCNRG	283518	broad.mit.edu	37	13	50589901	50589901	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:50589901T>G	uc001vdu.2	+	1	512	c.272T>G	c.(271-273)CTT>CGT	p.L91R	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_Missense_Mutation_p.L91R|TRIM13_uc001vdp.1_3'UTR|TRIM13_uc001vdq.1_3'UTR|TRIM13_uc001vdr.1_3'UTR|TRIM13_uc001vds.1_3'UTR	NM_173605	NP_775876	Q8N5I3	KCNRG_HUMAN	potassium channel regulator isoform 1	91	BTB.					voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.48e-10)|COAD - Colon adenocarcinoma(199;0.204)		TTCTATGAACTTCGTTCTCTA	0.403													39	129					0	0	0.006999	0	0
KCNRG	283518	broad.mit.edu	37	13	50589914	50589914	+	Silent	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:50589914T>A	uc001vdu.2	+	1	525	c.285T>A	c.(283-285)GTT>GTA	p.V95V	DLEU2_uc001vdn.1_Intron|DLEU2_uc001vdo.1_Intron|KCNRG_uc001vdt.2_Silent_p.V95V|TRIM13_uc001vdp.1_3'UTR|TRIM13_uc001vdq.1_3'UTR|TRIM13_uc001vdr.1_3'UTR|TRIM13_uc001vds.1_3'UTR	NM_173605	NP_775876	Q8N5I3	KCNRG_HUMAN	potassium channel regulator isoform 1	95	BTB.					voltage-gated potassium channel complex	identical protein binding|voltage-gated potassium channel activity				0		Acute lymphoblastic leukemia(7;3.41e-06)|Lung NSC(96;3.08e-05)|Breast(56;9.7e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.0207)|Myeloproliferative disorder(33;0.163)|Lung SC(185;0.187)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;1.48e-10)|COAD - Colon adenocarcinoma(199;0.204)		GTTCTCTAGTTGATCTCTTAA	0.418													46	141					0	0	0.003610	0	0
PCDH20	64881	broad.mit.edu	37	13	61986425	61986425	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:61986425C>G	uc001vid.3	-	2	2171	c.1807G>C	c.(1807-1809)GAA>CAA	p.E603Q	PCDH20_uc010thj.1_Missense_Mutation_p.E603Q	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	576	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		CTGTACTTTTCTTTCTCTTCT	0.443													31	80					0	0	0.007291	0	0
ABCC4	10257	broad.mit.edu	37	13	95725490	95725490	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:95725490A>C	uc001vmd.3	-	24	3105	c.2986T>G	c.(2986-2988)TGT>GGT	p.C996G	ABCC4_uc010afk.2_Missense_Mutation_p.C949G	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	996	Helical; (Potential).|ABC transmembrane type-1 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	TGTCGAACACACCACTGAAAC	0.448													13	36					0	0	0.003163	0	0
DOCK9	23348	broad.mit.edu	37	13	99515291	99515291	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:99515291G>A	uc001vnt.2	-	32	3619	c.3564C>T	c.(3562-3564)TTC>TTT	p.F1188F	DOCK9_uc001vnw.2_Silent_p.F1187F|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Silent_p.F1188F|DOCK9_uc010tis.1_Silent_p.F1187F|DOCK9_uc010tit.1_Silent_p.F1188F|DOCK9_uc010tiq.1_Silent_p.F166F|DOCK9_uc010afu.1_Silent_p.F1034F	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	1188					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					CGTTCACAGGGAAGGGTGACA	0.443													3	14					0	0	0.000248	0	0
NALCN	259232	broad.mit.edu	37	13	101844285	101844285	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:101844285G>A	uc001vox.1	-	14	1936	c.1747C>T	c.(1747-1749)CAT>TAT	p.H583Y	NALCN_uc001voy.2_Missense_Mutation_p.H298Y|NALCN_uc001voz.2_Missense_Mutation_p.H583Y|NALCN_uc001vpa.2_Missense_Mutation_p.H583Y	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	583	Helical; Name=S6 of repeat II; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GCAAAAAGATGATAGAGAATG	0.403													9	19					0	0	0.004482	0	0
COL4A1	1282	broad.mit.edu	37	13	110814731	110814731	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:110814731G>A	uc001vqw.3	-	48	4430	c.4308C>T	c.(4306-4308)CCC>CCT	p.P1436P	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1436	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GGGTGCCTGGGGGCCCCATGG	0.512													46	130					0	0	0.003610	0	0
MCF2L	23263	broad.mit.edu	37	13	113715025	113715025	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:113715025C>T	uc001vsu.2	+	5	681	c.659C>T	c.(658-660)CCG>CTG	p.P220L	MCF2L_uc001vsq.2_Missense_Mutation_p.P220L|MCF2L_uc010tjr.1_Missense_Mutation_p.P163L|MCF2L_uc001vsr.2_Missense_Mutation_p.P167L|MCF2L_uc001vss.3_Missense_Mutation_p.P161L|MCF2L_uc010tjs.1_Missense_Mutation_p.P161L|MCF2L_uc001vst.1_Missense_Mutation_p.P125L	NM_001112732	NP_001106203	O15068	MCF2L_HUMAN	MCF.2 cell line derived transforming	193	CRAL-TRIO.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	Rho guanyl-nucleotide exchange factor activity			ovary(1)|kidney(1)	2	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0368)|all_epithelial(44;0.0396)|Lung NSC(25;0.129)|Breast(118;0.188)				ATGAAGGTGCCGGTAAGTGCG	0.542													4	64					0	0	0.000248	0	0
GAS6	2621	broad.mit.edu	37	13	114526421	114526421	+	Missense_Mutation	SNP	G	A	A	rs144928601		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr13:114526421G>A	uc001vud.2	-	13	1733	c.1580C>T	c.(1579-1581)GCC>GTC	p.A527V	GAS6_uc001vug.2_Missense_Mutation_p.A228V|GAS6_uc001vuf.2_Missense_Mutation_p.A254V	NM_000820	NP_000811	Q14393	GAS6_HUMAN	growth arrest-specific 6 isoform 1 precursor	570	Laminin G-like 2.				cell proliferation|leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|post-translational protein modification|proteolysis|regulation of growth	endoplasmic reticulum lumen|extracellular space|Golgi lumen|platelet alpha granule lumen	calcium ion binding|receptor agonist activity			central_nervous_system(4)	4	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0176)|all_epithelial(44;0.0104)|all_lung(25;0.0249)|Lung NSC(25;0.0908)|Breast(118;0.188)				GAGGTCGGGGGCCCAGAGCGC	0.632													23	50					0	0	0.002299	0	0
OR4K2	390431	broad.mit.edu	37	14	20344665	20344665	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:20344665A>T	uc001vwh.1	+	1	239	c.239A>T	c.(238-240)AAG>ATG	p.K80M		NM_001005501	NP_001005501	Q8NGD2	OR4K2_HUMAN	olfactory receptor, family 4, subfamily K,	80	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCCACCCCAAAGATGATTACA	0.413													56	137					0	0	0.003610	0	0
OR4K14	122740	broad.mit.edu	37	14	20483095	20483095	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:20483095G>A	uc010tky.1	-	1	258	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GATCACTAAGGAAATCCCTGA	0.507													19	38					0	0	0.008871	0	0
TMEM55B	90809	broad.mit.edu	37	14	20926768	20926768	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:20926768G>A	uc001vxl.2	-	7	937	c.784C>T	c.(784-786)CTT>TTT	p.L262F	TMEM55B_uc001vxk.2_Missense_Mutation_p.L269F	NM_144568	NP_653169	Q86T03	TM55B_HUMAN	transmembrane protein 55B isoform 2	262	Helical; (Potential).					integral to membrane|late endosome membrane|lysosomal membrane	hydrolase activity				0	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;1.09e-07)|all cancers(55;1.19e-06)	GBM - Glioblastoma multiforme(265;0.0224)|READ - Rectum adenocarcinoma(17;0.193)		GCCCAATAAAGAGCCCGGCCC	0.567													17	48					0	0	0.004007	0	0
LRRC16B	90668	broad.mit.edu	37	14	24526176	24526176	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:24526176C>T	uc001wlj.2	+	13	1162	c.1005C>T	c.(1003-1005)TCC>TCT	p.S335S		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	335	LRR 4.									ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		TTGCCAGCTCCCTTCGATACC	0.627													11	45					0	0	0.001368	0	0
CLEC14A	161198	broad.mit.edu	37	14	38723892	38723892	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:38723892C>T	uc001wum.1	-	1	1683	c.1336G>A	c.(1336-1338)GAT>AAT	p.D446N		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	446	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		GGCTCAGGATCACTCTCCAGG	0.582													20	71					0	0	0.001882	0	0
PNN	5411	broad.mit.edu	37	14	39645288	39645288	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:39645288C>T	uc001wuw.3	+	2	217	c.120C>T	c.(118-120)ATC>ATT	p.I40I		NM_002687	NP_002678	Q9H307	PININ_HUMAN	pinin, desmosome associated protein	40	Necessary for interaction with RNPS1.|Necessary for mediating alternative 5' splicing.|Necessary for interactions with KRT8, KRT18 and KRT19.				cell adhesion|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|desmosome|intermediate filament|nuclear speck	DNA binding|protein binding|structural molecule activity			ovary(1)	1	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0119)		ACAGGCCCATCCAAGCCAGAT	0.423													17	50					0	0	0.006122	0	0
PPIL5	122769	broad.mit.edu	37	14	50074628	50074628	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:50074628C>T	uc001wwn.2	+	3	1117	c.793C>T	c.(793-795)CCT>TCT	p.P265S	SDCCAG1_uc010anj.1_Intron|PPIL5_uc001wwo.2_Intron|PPIL5_uc010ank.2_Missense_Mutation_p.P206S|PPIL5_uc001wwp.2_RNA	NM_152329	NP_689542	Q96L50	LLR1_HUMAN	peptidylprolyl isomerase (cyclophilin)-like 5	265	LRR 5.										0	all_epithelial(31;0.0021)|Breast(41;0.0124)					GATTCAATTTCCTTGCAAGAT	0.373													16	43					0	0	0.003163	0	0
KCNH5	27133	broad.mit.edu	37	14	63174948	63174948	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:63174948C>T	uc001xfx.2	-	11	2296	c.2245G>A	c.(2245-2247)GGA>AGA	p.G749R	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	749	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		ACGCTGGTTCCGGTGATGGAG	0.537													36	56					0	0	0.002836	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634820	70634820	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:70634820G>A	uc001xly.2	-	2	1074	c.320C>T	c.(319-321)TCT>TTT	p.S107F	SLC8A3_uc001xlw.2_Missense_Mutation_p.S107F|SLC8A3_uc001xlx.2_Missense_Mutation_p.S107F|SLC8A3_uc001xlz.2_Missense_Mutation_p.S107F|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	107	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CCTCTCTTGAGAGGTGATGAC	0.473													18	36					0	0	0.006122	0	0
ADAM21	8747	broad.mit.edu	37	14	70924293	70924293	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:70924293C>T	uc001xmd.2	+	1	77	c.77C>T	c.(76-78)TCC>TTC	p.S26F		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	26					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		TTGTCTATTTCCGGCTACTGT	0.542													46	155					0	0	0.003214	0	0
MAP3K9	4293	broad.mit.edu	37	14	71199523	71199523	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:71199523C>T	uc001xmm.2	-	11	2563	c.2563G>A	c.(2563-2565)GAT>AAT	p.D855N	MAP3K9_uc010ttk.1_Missense_Mutation_p.D583N|MAP3K9_uc001xmk.2_Missense_Mutation_p.D588N|MAP3K9_uc001xml.2_Missense_Mutation_p.D869N	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	855					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		ACAATTTCATCGCTGTCGGAG	0.602													21	42					0	0	0.001523	0	0
TMEM63C	57156	broad.mit.edu	37	14	77715696	77715696	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:77715696C>T	uc001xtf.2	+	21	2145	c.1933C>T	c.(1933-1935)CCC>TCC	p.P645S	TMEM63C_uc010asq.1_Missense_Mutation_p.P645S	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	645						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		CTCCTTTGCACCCACCAAACT	0.537													34	81					0	0	0.006230	0	0
C14orf102	55051	broad.mit.edu	37	14	90756749	90756749	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:90756749G>A	uc001xyi.1	-	10	2076	c.2045C>T	c.(2044-2046)CCT>CTT	p.P682L	C14orf102_uc010atp.1_Missense_Mutation_p.P187L|C14orf102_uc001xyj.1_Missense_Mutation_p.P451L|C14orf102_uc001xyk.1_5'Flank	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	682							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		AGAAAACAAAGGGTTGAAAAA	0.502													15	28					0	0	0.004007	0	0
GPR68	8111	broad.mit.edu	37	14	91701088	91701088	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:91701088C>T	uc001xzg.2	-	2	648	c.307G>A	c.(307-309)GAG>AAG	p.E103K	GPR68_uc001xzh.2_Missense_Mutation_p.E113K	NM_003485	NP_003476	Q15743	OGR1_HUMAN	G protein-coupled receptor 68	103	Helical; Name=3; (Potential).				inflammatory response	integral to plasma membrane	G-protein coupled receptor activity			kidney(1)	1		all_cancers(154;0.0555)		COAD - Colon adenocarcinoma(157;0.21)		TAGATGTTCTCGTACAGGAGG	0.612													9	24					0	0	0.006214	0	0
KIAA1409	57578	broad.mit.edu	37	14	94038393	94038393	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:94038393C>T	uc001ybv.1	+	12	1461	c.1378C>T	c.(1378-1380)CCA>TCA	p.P460S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P460S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	637						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		AACAGAAGTCCCAGATAATCA	0.348													14	26					0	0	0.004990	0	0
SERPINA6	866	broad.mit.edu	37	14	94770782	94770782	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:94770782G>A	uc001ycv.2	-	5	1295	c.1191C>T	c.(1189-1191)TTC>TTT	p.F397F	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	397					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CCCTCGCCAGGAAAAGGCTGC	0.527													40	82					0	0	0.002522	0	0
SERPINA12	145264	broad.mit.edu	37	14	94962888	94962888	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:94962888G>A	uc001ydj.2	-	4	1523	c.727C>T	c.(727-729)CGT>TGT	p.R243C		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	243					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		ATGCCACTACGGAACATCATG	0.418													51	163					0	0	0.003610	0	0
SERPINA12	145264	broad.mit.edu	37	14	94964660	94964660	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:94964660G>A	uc001ydj.2	-	3	871	c.75C>T	c.(73-75)TTC>TTT	p.F25F		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	25					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		TCCTTGGTGAGAAGCTCGGCT	0.478													69	136					0	0	0.003610	0	0
SERPINA5	5104	broad.mit.edu	37	14	95054272	95054272	+	Silent	SNP	C	T	T	rs1803280		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:95054272C>T	uc001ydm.2	+	3	783	c.573C>T	c.(571-573)CTC>CTT	p.L191L	SERPINA5_uc010ave.2_Silent_p.L191L|SERPINA5_uc001ydn.1_Silent_p.L191L	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	191					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	TTAAGAACCTCGATAGCAATG	0.458													45	125					0	0	0.003610	0	0
DICER1	23405	broad.mit.edu	37	14	95560482	95560482	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:95560482G>T	uc001ydw.2	-	25	5289	c.5107C>A	c.(5107-5109)CGC>AGC	p.R1703S	DICER1_uc010avh.1_Missense_Mutation_p.R601S|DICER1_uc001ydv.2_Missense_Mutation_p.R1693S|DICER1_uc001ydx.2_Missense_Mutation_p.R1703S	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	1703	RNase III 2.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		AATTCTAAGCGCTGGTAACAA	0.517			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				23	92					3.28513e-13	4.42554e-13	0.003954	1	0
C14orf49	161176	broad.mit.edu	37	14	95932343	95932343	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:95932343G>A	uc001yei.3	-	3	567	c.552C>T	c.(550-552)ATC>ATT	p.I184I	C14orf49_uc010avi.2_Silent_p.I184I|C14orf49_uc001yej.1_Silent_p.I184I	NM_152592	NP_689805	Q6ZMZ3	SYNE3_HUMAN	nesprin-3	184	Cytoplasmic (Potential).				cytoskeletal anchoring at nuclear membrane	integral to membrane|nuclear outer membrane|SUN-KASH complex	actin binding			central_nervous_system(1)	1		all_cancers(154;0.0937)		COAD - Colon adenocarcinoma(157;0.245)		TGGGGTCCCCGATCCTGTTGA	0.637													31	78					0	0	0.002445	0	0
PPP2R5C	5527	broad.mit.edu	37	14	102368210	102368210	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:102368210C>T	uc001yko.2	+	9	1147	c.1007C>T	c.(1006-1008)TCC>TTC	p.S336F	PPP2R5C_uc010txr.1_Missense_Mutation_p.S367F|PPP2R5C_uc001ykk.2_Missense_Mutation_p.S391F|PPP2R5C_uc010txt.1_Missense_Mutation_p.S326F|PPP2R5C_uc001ykn.2_Missense_Mutation_p.S336F|PPP2R5C_uc001ykp.2_Missense_Mutation_p.S336F|PPP2R5C_uc001ykq.2_Missense_Mutation_p.S234F	NM_002719	NP_002710	Q13362	2A5G_HUMAN	gamma isoform of regulatory subunit B56, protein	336					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of cell proliferation|proteasomal ubiquitin-dependent protein catabolic process|signal transduction	chromosome, centromeric region|nucleus|protein phosphatase type 2A complex	protein binding|protein binding|protein phosphatase type 2A regulator activity|protein phosphatase type 2A regulator activity			ovary(1)|breast(1)	2						AAATGTGTCTCCAGCCCACAC	0.448													36	68					0	0	0.004878	0	0
KLC1	3831	broad.mit.edu	37	14	104124103	104124103	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:104124103T>C	uc001yno.2	+	3	790	c.482T>C	c.(481-483)ATT>ACT	p.I161T	KLC1_uc010tyd.1_Missense_Mutation_p.I320T|KLC1_uc010tye.1_Missense_Mutation_p.I157T|KLC1_uc001ynm.1_Missense_Mutation_p.I161T|KLC1_uc001ynn.1_Missense_Mutation_p.I157T|KLC1_uc010tyf.1_Missense_Mutation_p.I161T	NM_182923	NP_891553	Q07866	KLC1_HUMAN	kinesin light chain 1 isoform 2	161					blood coagulation|microtubule-based movement|stress granule disassembly	cytosol|kinesin complex|microtubule	microtubule motor activity|protein binding				0		Melanoma(154;0.155)|all_epithelial(191;0.19)				GATGACGACATTTCCCCATCC	0.428													10	15					0	0	0.006214	0	0
KIF26A	26153	broad.mit.edu	37	14	104639320	104639320	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:104639320C>T	uc001yos.3	+	8	1427	c.1427C>T	c.(1426-1428)TCG>TTG	p.S476L		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	476	ATP (Potential).|Kinesin-motor.				blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		CCAGGCAAGTCGTACACCATG	0.667													11	11					0	0	0.008291	0	0
ADAM6	8755	broad.mit.edu	37	14	106733175	106733175	+	RNA	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:106733175G>A	uc010tyt.1	-	547		c.17561C>T								Parts of antibodies, mostly variable regions.												0						CGTGTCCTCAGATCTCAGGCT	0.532													93	323					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	107099220	107099220	+	RNA	SNP	A	T	T	rs148129115	by1000genomes	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:107099220A>T	uc010tyt.1	-	98		c.4502T>A								Parts of antibodies, mostly variable regions.												0						GTCTCTGGAGATGGTGAATCG	0.498													5	70					0	0	0.001168	0	0
ADAM6	8755	broad.mit.edu	37	14	107183413	107183413	+	RNA	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr14:107183413C>A	uc010tyt.1	-	30		c.2044G>T								Parts of antibodies, mostly variable regions.												0						CACAGTAATACACGGCCGTGT	0.562													10	193					3.07112e-06	4.09142e-06	0.000978	1	0
Unknown	0	broad.mit.edu	37	15	22473081	22473081	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:22473081C>T	uc001yuj.1	-	2		c.190G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		CACTCCAGCCCCTTCCCTGGG	0.572													15	174					0	0	0.004990	0	0
MKRN3	7681	broad.mit.edu	37	15	23811120	23811120	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:23811120C>T	uc001ywh.3	+	1	667	c.191C>T	c.(190-192)CCT>CTT	p.P64L	MKRN3_uc001ywi.2_Missense_Mutation_p.P64L|MKRN3_uc010ayi.1_Missense_Mutation_p.P64L	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	64						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GCTCCAGTCCCTGCCCACCTC	0.667													17	51					0	0	0.006122	0	0
GABRB3	2562	broad.mit.edu	37	15	26806142	26806142	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:26806142C>T	uc001zaz.2	-	8	1159	c.1017G>A	c.(1015-1017)CAG>CAA	p.Q339Q	GABRB3_uc010uae.1_Silent_p.Q254Q|GABRB3_uc001zba.2_Silent_p.Q339Q|GABRB3_uc001zbb.2_Silent_p.Q395Q	NM_000814	NP_000805	P28472	GBRB3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	339	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)|liver(1)|central_nervous_system(1)	5		all_cancers(20;1.89e-22)|all_lung(180;6.35e-15)|Breast(32;0.000279)|Colorectal(260;0.232)		all cancers(64;1.46e-07)|Epithelial(43;2.89e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0251)|COAD - Colon adenocarcinoma(236;0.235)|Lung(196;0.243)	Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	CAAGCTTCTTCTGCCTTTGAG	0.507													46	110					0	0	0.002222	0	0
HERC2	8924	broad.mit.edu	37	15	28391446	28391446	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:28391446C>T	uc001zbj.2	-	71	11051	c.10945G>A	c.(10945-10947)GAG>AAG	p.E3649K		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3649					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TGGCGCCTCTCTGTGGAGCAC	0.557													22	55					0	0	0.002299	0	0
RASGRP1	10125	broad.mit.edu	37	15	38852064	38852064	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:38852064C>T	uc001zke.3	-	2	356	c.178G>A	c.(178-180)GCC>ACC	p.A60T	RASGRP1_uc001zkd.3_Missense_Mutation_p.A60T	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	60	Ras exchanger motif region; required for transforming activity (By similarity).|N-terminal Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		TCCAGGCTGGCTCCTTTGGCT	0.502													19	27					0	0	0.002780	0	0
THBS1	7057	broad.mit.edu	37	15	39874765	39874765	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:39874765C>T	uc001zkh.2	+	3	618	c.439C>T	c.(439-441)CTC>TTC	p.L147F		NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	147	TSP N-terminal.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	GGAAGAAGCTCTCCTGGCAAC	0.577													16	23					0	0	0.006122	0	0
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42132422	42132422	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:42132422G>A	uc010bco.2	+	2	177	c.76G>A	c.(76-78)GAC>AAC	p.D26N	JMJD7-PLA2G4B_uc001zoo.3_Missense_Mutation_p.D257N|JMJD7-PLA2G4B_uc010bcn.2_Missense_Mutation_p.D257N|JMJD7-PLA2G4B_uc001zoq.3_5'UTR|JMJD7-PLA2G4B_uc001zor.1_5'Flank	NM_001114633	NP_001108105	P0C869	PA24B_HUMAN	phospholipase A2, group IVB	26	C2.				arachidonic acid metabolic process|calcium-mediated signaling|glycerophospholipid catabolic process|inflammatory response|parturition	cytosol|early endosome membrane|extracellular region|mitochondrial membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|calcium-dependent phospholipid binding|lysophospholipase activity			large_intestine(1)	1						ACCCTCTAAGGACCTAGGTGA	0.667													18	62					0	0	0.006122	0	0
DUOX2	50506	broad.mit.edu	37	15	45389470	45389470	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:45389470C>T	uc010bea.2	-	29	4016	c.3813G>A	c.(3811-3813)GAG>GAA	p.E1271E	DUOX2_uc001zun.2_Silent_p.E1271E	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1271	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CCACGCTGATCTCCACCTTCT	0.587													30	76					0	0	0.002096	0	0
SQRDL	58472	broad.mit.edu	37	15	45981393	45981393	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:45981393C>T	uc001zvt.2	+	10	1462	c.1273C>T	c.(1273-1275)CTG>TTG	p.L425L	SQRDL_uc001zvu.2_Silent_p.L425L|SQRDL_uc001zvv.2_Silent_p.L425L	NM_021199	NP_067022	Q9Y6N5	SQRD_HUMAN	sulfide dehydrogenase like precursor	425							oxidoreductase activity			ovary(1)	1		Lung NSC(122;0.000117)|all_lung(180;0.000737)|Melanoma(134;0.0417)		all cancers(107;5.89e-18)|GBM - Glioblastoma multiforme(94;1.21e-06)|COAD - Colon adenocarcinoma(120;0.17)|Colorectal(133;0.188)		GATGCCTTTCCTGTATTGGAA	0.468													29	82					0	0	0.008361	0	0
C15orf33	196951	broad.mit.edu	37	15	49882204	49882204	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:49882204C>T	uc001zxl.2	-	4	400	c.106G>A	c.(106-108)GAT>AAT	p.D36N	C15orf33_uc001zxm.2_Missense_Mutation_p.D36N	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	36										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		GGCCAATAATCCTGCAAAAAA	0.284													11	33					0	0	0.008291	0	0
MYO5C	55930	broad.mit.edu	37	15	52497174	52497174	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:52497174C>T	uc010bff.2	-	38	4845	c.4708G>A	c.(4708-4710)GAG>AAG	p.E1570K	MYO5C_uc010uga.1_RNA|uc002abv.2_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1570	Dilute.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		CTCACAAGCTCGGGGTCCAGG	0.582													22	46					0	0	0.001523	0	0
MYO5C	55930	broad.mit.edu	37	15	52517715	52517715	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:52517715G>A	uc010bff.2	-	26	3359	c.3222C>T	c.(3220-3222)TTC>TTT	p.F1074F	MYO5C_uc010uga.1_RNA	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	1074	Potential.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TCTCTTTTTCGAACTCAGAGA	0.368													39	90					0	0	0.002222	0	0
PLEKHO2	80301	broad.mit.edu	37	15	65153749	65153749	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:65153749C>T	uc002anv.2	+	5	592	c.458C>T	c.(457-459)CCA>CTA	p.P153L	PLEKHO2_uc010bgz.2_Intron|PLEKHO2_uc002anw.2_Missense_Mutation_p.P103L	NM_025201	NP_079477	Q8TD55	PKHO2_HUMAN	pleckstrin homology domain containing, family O	153										ovary(1)|lung(1)	2						CGACGCCGGCCACCAACGAGA	0.647													7	24					0	0	0.000978	0	0
C15orf44	81556	broad.mit.edu	37	15	65892154	65892154	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:65892154G>A	uc002apd.2	-	4	780	c.444C>T	c.(442-444)TTC>TTT	p.F148F	C15orf44_uc010uix.1_Silent_p.F184F|C15orf44_uc010uiz.1_Silent_p.F112F|C15orf44_uc010uja.1_Silent_p.F99F|C15orf44_uc010ujb.1_Silent_p.F69F|C15orf44_uc002ape.3_Silent_p.F148F|C15orf44_uc010uiy.1_Silent_p.F69F|C15orf44_uc010ujc.1_Silent_p.F148F	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	148	VWFA.									ovary(1)	1						ACTTAGATGGGAAAGGAAAAG	0.408													30	61					0	0	0.002445	0	0
ITGA11	22801	broad.mit.edu	37	15	68600027	68600027	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:68600027C>T	uc002ari.2	-	27	3269	c.3182G>A	c.(3181-3183)AGC>AAC	p.S1061N	ITGA11_uc010bib.2_Missense_Mutation_p.S1062N	NM_001004439	NP_001004439	Q9UKX5	ITA11_HUMAN	integrin, alpha 11 precursor	1061	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development	integrin complex	collagen binding|receptor activity			kidney(2)|pancreas(1)	3					Tirofiban(DB00775)	ATCAGAGTTGCTGTGATTCTG	0.542													8	21					0	0	0.004482	0	0
C15orf27	123591	broad.mit.edu	37	15	76496435	76496435	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:76496435G>A	uc002bbq.2	+	11	1530	c.1375G>A	c.(1375-1377)GAC>AAC	p.D459N	C15orf27_uc010bkp.2_Missense_Mutation_p.D275N|C15orf27_uc002bbr.2_Missense_Mutation_p.D275N|C15orf27_uc002bbs.2_Missense_Mutation_p.D137N	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	459						integral to membrane					0						GAAGGCCTTGGACCCAGCCCC	0.687													17	72					0	0	0.004007	0	0
ALPK3	57538	broad.mit.edu	37	15	85411675	85411676	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:85411675_85411676GG>AA	uc002ble.2	+	14	5879_5880	c.5712_5713GG>AA	c.(5710-5715)CAGGGC>CAAAGC	p.G1905S	ALPK3_uc010upc.1_Missense_Mutation_p.G206S	NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1905					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CCAAGGCCCAGGGCATGCGGTA	0.599													12	24					0	0	0.004672	0	0
GABARAPL3	23766	broad.mit.edu	37	15	90892025	90892025	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:90892025C>T	uc010uqf.1	-	1		c.655G>A				NR_028287				Homo sapiens GABA-A receptor-associated protein mRNA, complete cds.												0						CACACACACCCCTCCCCTACC	0.517													8	10					0	0	0.003080	0	0
BLM	641	broad.mit.edu	37	15	91354460	91354460	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr15:91354460C>T	uc002bpr.2	+	21	3997	c.3900C>T	c.(3898-3900)AGC>AGT	p.S1300S	BLM_uc010uqh.1_Silent_p.S1300S|BLM_uc010uqi.1_Silent_p.S925S|BLM_uc010bnx.2_Silent_p.S1169S|BLM_uc002bpt.2_Silent_p.S275S	NM_000057	NP_000048	P54132	BLM_HUMAN	Bloom syndrome protein	1300					double-strand break repair via homologous recombination|G2 phase of mitotic cell cycle|G2/M transition DNA damage checkpoint|negative regulation of cell division|positive regulation of transcription, DNA-dependent|protein oligomerization|regulation of cyclin-dependent protein kinase activity|replication fork processing|replication fork protection|response to X-ray	cytoplasm|lateral element|nuclear matrix|nucleolus|PML body	ATP binding|bubble DNA binding|DNA strand annealing activity|four-way junction helicase activity|G-quadruplex DNA binding|p53 binding			ovary(3)|skin(2)|breast(1)	6	Lung NSC(78;0.0875)|all_lung(78;0.109)		Lung(145;0.189)			CAGGGATAAGCCTGTCCAGCA	0.478			Mis|N|F			leukemia|lymphoma|skin squamous cell |other cancers		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Bloom_syndrome				100	291					0	0	0.003610	0	0
NUBP2	10101	broad.mit.edu	37	16	1837943	1837943	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:1837943C>G	uc002cmw.3	+	5	580	c.491C>G	c.(490-492)GCG>GGG	p.A164G	NUBP2_uc002cmx.3_Missense_Mutation_p.A23G|NUBP2_uc010brx.2_Missense_Mutation_p.A104G	NM_012225	NP_036357	Q9Y5Y2	NUBP2_HUMAN	nucleotide binding protein 2 (MinD homolog, E.	164						microtubule organizing center|nucleus	4 iron, 4 sulfur cluster binding|ATP binding|metal ion binding|protein binding				0						GCCCCGCAGGCGGTGTCCGTG	0.682													3	97					0	0	0.000248	0	0
E4F1	1877	broad.mit.edu	37	16	2285568	2285568	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:2285568G>A	uc002cpm.2	+	14	2398	c.2350G>A	c.(2350-2352)GTC>ATC	p.V784I	E4F1_uc010bsi.2_3'UTR|E4F1_uc010bsj.2_Missense_Mutation_p.V607I|DNASE1L2_uc002cpn.2_5'Flank|DNASE1L2_uc002cpo.2_5'Flank|DNASE1L2_uc002cpp.2_5'Flank|DNASE1L2_uc002cpq.2_5'Flank	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	784					cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						GACGGTCATCGTCTAGCATGA	0.642													9	11					0	0	0.004482	0	0
MMP25	64386	broad.mit.edu	37	16	3108256	3108256	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:3108256G>A	uc002cth.2	+	8	1318	c.1081G>A	c.(1081-1083)GAG>AAG	p.E361K	uc002ctj.1_Intron	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	361	Hemopexin-like 1.				inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						CCGCTTCTGGGAGGGGCTGCC	0.647													14	36					0	0	0.004007	0	0
BTBD12	84464	broad.mit.edu	37	16	3639611	3639611	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:3639611G>A	uc002cvp.2	-	12	4655	c.4028C>T	c.(4027-4029)CCT>CTT	p.P1343L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1343	Interaction with MUS81.|Interaction with PLK1 and TERF2-TERF2IP.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						GGGACGGGAAGGGCTTCTGTG	0.662								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				34	125					0	0	0.003755	0	0
GLYR1	84656	broad.mit.edu	37	16	4872923	4872923	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:4872923C>T	uc002cxx.3	-	7	671	c.634G>A	c.(634-636)GAT>AAT	p.D212N	GLYR1_uc002cxy.2_RNA|GLYR1_uc002cxz.1_Missense_Mutation_p.D143N|GLYR1_uc002cya.2_Missense_Mutation_p.D212N|GLYR1_uc010uxv.1_Missense_Mutation_p.D131N	NM_032569	NP_115958	Q49A26	GLYR1_HUMAN	cytokine-like nuclear factor n-pac	212					pentose-phosphate shunt	nucleus	coenzyme binding|DNA binding|methylated histone residue binding|phosphogluconate dehydrogenase (decarboxylating) activity				0						GGATCTGCATCTTTAACAGGC	0.493													39	73					0	0	0.003610	0	0
GRIN2A	2903	broad.mit.edu	37	16	9943662	9943662	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:9943662C>T	uc002czo.3	-	5	1827	c.1279G>A	c.(1279-1281)GAG>AAG	p.E427K	GRIN2A_uc010uym.1_Missense_Mutation_p.E427K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E270K|GRIN2A_uc002czr.3_Missense_Mutation_p.E427K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	427	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	ACACACGTCTCGGTCAGGGGG	0.547													17	72					0	0	0.008871	0	0
TNFRSF17	608	broad.mit.edu	37	16	12059218	12059218	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:12059218T>A	uc002dbv.2	+	1	255	c.37T>A	c.(37-39)TAT>AAT	p.Y13N	TNFRSF17_uc010buy.2_Missense_Mutation_p.Y13N|TNFRSF17_uc010buz.2_Missense_Mutation_p.Y13N	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	13	Extracellular (Potential).|TNFR-Cys.				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						CCAAAATGAATATTTTGACAG	0.398			T	IL2	intestinal T-cell lymphoma								5	162					0	0	0.001168	0	0
TMC5	79838	broad.mit.edu	37	16	19451758	19451758	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:19451758G>A	uc002dgc.3	+	3	1147	c.398G>A	c.(397-399)CGA>CAA	p.R133Q	TMC5_uc010vaq.1_Missense_Mutation_p.R133Q|TMC5_uc002dgb.3_Missense_Mutation_p.R133Q|TMC5_uc010var.1_Missense_Mutation_p.R133Q	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	133	Extracellular (Potential).					integral to membrane				skin(1)	1						GGATCTCAACGAAATCCTGAT	0.498													87	164					0	0	0.003610	0	0
C16orf62	57020	broad.mit.edu	37	16	19580782	19580782	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:19580782G>A	uc002dgn.1	+	3	166	c.154G>A	c.(154-156)GGA>AGA	p.G52R	C16orf62_uc002dgo.1_Missense_Mutation_p.G52R|C16orf62_uc010vas.1_5'UTR|C16orf62_uc002dgm.1_Missense_Mutation_p.G52R	NM_020314	NP_064710	Q7Z3J2	CP062_HUMAN	hypothetical protein LOC57020	52						integral to membrane				ovary(1)	1						GAACCGGAAAGGAAGCACTTC	0.542													33	45					0	0	0.003271	0	0
GPR139	124274	broad.mit.edu	37	16	20043519	20043519	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:20043519G>A	uc002dgu.1	-	2	762	c.600C>T	c.(598-600)TTC>TTT	p.F200F	GPR139_uc010vaw.1_Silent_p.F107F	NM_001002911	NP_001002911	Q6DWJ6	GP139_HUMAN	G protein-coupled receptor 139	200	Helical; Name=5; (Potential).					integral to membrane|plasma membrane				ovary(2)	2						AGTTCAAGATGAAGAAGATGG	0.507													17	43					0	0	0.007413	0	0
DNAH3	55567	broad.mit.edu	37	16	21063184	21063184	+	Missense_Mutation	SNP	C	T	T	rs143443640	by1000genomes	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:21063184C>T	uc010vbe.1	-	29	4045	c.4045G>A	c.(4045-4047)GAC>AAC	p.D1349N		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1349	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCCACCACGTCGCGGGCTGTT	0.517													40	81					0	0	0.006999	0	0
DNAH3	55567	broad.mit.edu	37	16	21136654	21136656	+	Missense_Mutation	TNP	TCC	GTT	GTT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:21136654_21136656TCC>GTT	uc010vbe.1	-	9	1244_1246	c.1244_1246GGA>AAC	c.(1243-1248)CGGAAG>CAACAG	p.415_416RK>QQ	DNAH3_uc002die.2_Missense_Mutation_p.386_387RK>QQ	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	415_416	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CAGTGCTCCTTCCGTGAGGTAAA	0.507													12	92					0	0	0.004672	0	0
EEF2K	29904	broad.mit.edu	37	16	22269960	22269960	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:22269960C>T	uc002dki.2	+	10	1660	c.1175C>T	c.(1174-1176)TCT>TTT	p.S392F	EEF2K_uc002dkh.2_RNA	NM_013302	NP_037434	O00418	EF2K_HUMAN	elongation factor-2 kinase	392					insulin receptor signaling pathway|translational elongation	cytosol	ATP binding|calcium ion binding|calmodulin binding|elongation factor-2 kinase activity|translation factor activity, nucleic acid binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(48;0.0223)		ACCTTCGACTCTCTCCCTTCT	0.597													17	68					0	0	0.006122	0	0
ERN2	10595	broad.mit.edu	37	16	23722330	23722330	+	Missense_Mutation	SNP	G	A	A	rs139816512		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:23722330G>A	uc002dma.3	-	2	416	c.247C>T	c.(247-249)CTC>TTC	p.L83F	ERN2_uc010bxp.2_Missense_Mutation_p.L83F|ERN2_uc010bxq.1_5'UTR	NM_033266	NP_150296	Q76MJ5	ERN2_HUMAN	endoplasmic reticulum to nucleus signalling 2	35	Lumenal (Potential).				apoptosis|induction of apoptosis|mRNA processing|negative regulation of transcription, DNA-dependent|rRNA catabolic process|transcription, DNA-dependent	endoplasmic reticulum membrane|integral to membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|ovary(2)	6				GBM - Glioblastoma multiforme(48;0.0156)		TCTGGCCTGAGAGTATGAACC	0.577													13	81					0	0	0.002450	0	0
CACNG3	10368	broad.mit.edu	37	16	24268286	24268286	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:24268286G>A	uc002dmf.2	+	1	1411	c.211G>A	c.(211-213)GGG>AGG	p.G71R		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	71					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CTGCCTAGAAGGTATTTACAA	0.428													17	23					0	0	0.004990	0	0
CACNG3	10368	broad.mit.edu	37	16	24372957	24372957	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:24372957G>A	uc002dmf.2	+	4	1921	c.721G>A	c.(721-723)GAG>AAG	p.E241K		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	241					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		TCGCTCCACCGAGCCCAGATC	0.572													23	43					0	0	0.001882	0	0
RBBP6	5930	broad.mit.edu	37	16	24583080	24583080	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:24583080C>T	uc002dmh.2	+	18	5733	c.4693C>T	c.(4693-4695)CCT>TCT	p.P1565S	RBBP6_uc002dmi.2_Missense_Mutation_p.P1531S|RBBP6_uc010bxr.2_Missense_Mutation_p.P725S|RBBP6_uc002dmk.2_Missense_Mutation_p.P1398S	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	1565					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		AGATAAAAATCCTTGTAAGGA	0.368													9	37					0	0	0.006214	0	0
HS3ST4	9951	broad.mit.edu	37	16	26147478	26147478	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:26147478G>A	uc002dof.2	+	2	1672	c.1280G>A	c.(1279-1281)AGA>AAA	p.R427K		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	427	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GTCATCCACAGACTGAGGAAA	0.473													12	20					0	0	0.000978	0	0
KCTD13	253980	broad.mit.edu	37	16	29923187	29923187	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:29923187G>A	uc002duv.2	-	4	697	c.506C>T	c.(505-507)CCC>CTC	p.P169L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|ASPHD1_uc002duu.3_Intron|ASPHD1_uc010bzi.2_Intron|KCTD13_uc010vee.1_RNA	NM_178863	NP_849194	Q8WZ19	BACD1_HUMAN	potassium channel tetramerisation domain	169					cell migration|DNA replication|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0						CTTCACCACGGGCTGGCGGGG	0.677													20	38					0	0	0.003330	0	0
FBXL19	54620	broad.mit.edu	37	16	30941595	30941595	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:30941595C>T	uc002eab.2	+	7	1209	c.1051C>T	c.(1051-1053)CGG>TGG	p.R351W	FBXL19_uc002dzz.1_Missense_Mutation_p.R39W|FBXL19_uc002eaa.1_Missense_Mutation_p.R250W	NM_001099784	NP_001093254	Q6PCT2	FXL19_HUMAN	F-box and leucine-rich repeat protein 19	351							DNA binding|zinc ion binding			ovary(2)|lung(1)|breast(1)	4						CGGCGAGGCCCGGAATGGGCG	0.706													9	44					0	0	0.006214	0	0
ITGAD	3681	broad.mit.edu	37	16	31437362	31437362	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:31437362G>A	uc002ebv.1	+	30	3448	c.3399G>A	c.(3397-3399)AAG>AAA	p.K1133K	ITGAD_uc010cap.1_Silent_p.K1134K	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	1133	Cytoplasmic (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						GCCACTACAAGGAAATGCTGG	0.378													10	29					0	0	0.002450	0	0
UBE2MP1	606551	broad.mit.edu	37	16	34404153	34404153	+	RNA	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:34404153T>A	uc002edv.1	-	1		c.610A>T				NR_002837				full-length cDNA clone CS0DH003YB23 of T cells (Jurkat cell line) of Homo sapiens (human).												0						CCGGTTGTTCTGCAGGACCTC	0.557													4	43					0	0	0.000248	0	0
ORC6L	23594	broad.mit.edu	37	16	46726457	46726457	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:46726457G>A	uc002eeh.2	+	3	419	c.359G>A	c.(358-360)AGC>AAC	p.S120N	ORC6L_uc002eeg.1_Missense_Mutation_p.S120N|ORC6L_uc010cbe.1_Missense_Mutation_p.S71N	NM_014321	NP_055136	Q9Y5N6	ORC6_HUMAN	origin recognition complex subunit 6	120					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA binding|protein binding				0		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				ATACTAAAAAGGTATGGGGCA	0.259													34	62					0	0	0.002096	0	0
ZNF423	23090	broad.mit.edu	37	16	49670785	49670785	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:49670785G>A	uc002efs.2	-	5	2576	c.2278C>T	c.(2278-2280)CGC>TGC	p.R760C	ZNF423_uc010vgn.1_Missense_Mutation_p.R643C	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	760	C2H2-type 18.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				GCCTCCTTGCGGAAGTCCCAG	0.597													15	27					0	0	0.002450	0	0
CCDC102A	92922	broad.mit.edu	37	16	57552091	57552091	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:57552091C>T	uc002elw.2	-	6	1350	c.1137G>A	c.(1135-1137)CGG>CGA	p.R379R		NM_033212	NP_149989	Q96A19	C102A_HUMAN	coiled-coil domain containing 102A	379	Potential.									ovary(1)	1						CGACCTGTGCCCGCAGCTTCT	0.701													65	121					0	0	0.003610	0	0
GPR56	9289	broad.mit.edu	37	16	57685239	57685239	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:57685239C>T	uc002emb.2	+	4	484	c.192C>T	c.(190-192)GCC>GCT	p.A64A	GPR56_uc002elz.1_Intron|GPR56_uc002ema.1_5'UTR|GPR56_uc002emc.2_Silent_p.A64A|GPR56_uc002emf.2_Silent_p.A64A|GPR56_uc010vhs.1_Silent_p.A64A|GPR56_uc002emd.2_Silent_p.A64A|GPR56_uc002eme.2_Silent_p.A64A|GPR56_uc010vht.1_Silent_p.A69A|GPR56_uc002emg.3_Silent_p.A64A|GPR56_uc010vhu.1_5'UTR	NM_005682	NP_005673	Q9Y653	GPR56_HUMAN	G protein-coupled receptor 56 isoform a	64	Extracellular (Potential).				brain development|cell adhesion|cell-cell signaling|neuropeptide signaling pathway	integral to plasma membrane	G-protein coupled receptor activity				0						CCGAAGAGGCCCTCACAGTCC	0.602													30	66					0	0	0.006320	0	0
CDH16	1014	broad.mit.edu	37	16	66946011	66946011	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:66946011C>T	uc002eql.2	-	13	1654	c.1581G>A	c.(1579-1581)GAG>GAA	p.E527E	CDH16_uc010cdy.2_Silent_p.E527E|CDH16_uc002eqm.2_Silent_p.E430E	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	527	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		CCACCACCACCTCATGACTTG	0.627													6	55					0	0	0.001984	0	0
RLTPR	146206	broad.mit.edu	37	16	67685733	67685733	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:67685733C>T	uc002etn.2	+	25	2693	c.2573C>T	c.(2572-2574)GCC>GTC	p.A858V	RLTPR_uc010cel.1_Missense_Mutation_p.A851V|RLTPR_uc010vjr.1_Missense_Mutation_p.A822V|RLTPR_uc010vjs.1_5'Flank	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	858										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		CTGCAAGATGCCTTCActagg	0.493													17	22					0	0	0.004007	0	0
NOB1	28987	broad.mit.edu	37	16	69776383	69776383	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:69776383G>A	uc002exs.2	-	9	1107	c.1091C>T	c.(1090-1092)CCT>CTT	p.P364L		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	364						nucleus	metal ion binding|protein binding				0						GATGTAGTCAGGGGCGAACAC	0.612													23	82					0	0	0.002780	0	0
HYDIN	54768	broad.mit.edu	37	16	70989289	70989289	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:70989289C>T	uc002ezr.2	-	40	6430	c.6302G>A	c.(6301-6303)GGA>GAA	p.G2101E		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2102										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				AGCCTCCTCTCCTTCCTTCAC	0.567													13	55					0	0	0.004007	0	0
HYDIN	54768	broad.mit.edu	37	16	71065807	71065807	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:71065807G>A	uc002ezr.2	-	19	2671	c.2543C>T	c.(2542-2544)TCC>TTC	p.S848F	HYDIN_uc010cfz.1_Missense_Mutation_p.S593F|HYDIN_uc002ezv.2_Missense_Mutation_p.S848F|HYDIN_uc010vmc.1_Missense_Mutation_p.S865F|HYDIN_uc010vmd.1_Missense_Mutation_p.S875F	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	848										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CGTCCAAAGGGATTTTTTGTG	0.438													6	38					0	0	0.006214	0	0
PMFBP1	83449	broad.mit.edu	37	16	72174407	72174407	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:72174407C>T	uc002fcc.3	-	6	883	c.711G>A	c.(709-711)GAG>GAA	p.E237E	PMFBP1_uc002fcd.2_Silent_p.E237E|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Silent_p.E92E	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	237										ovary(2)	2		Ovarian(137;0.179)				GTTTCTGAGTCTCCTGATGCT	0.428													76	124					0	0	0.003610	0	0
PMFBP1	83449	broad.mit.edu	37	16	72184519	72184519	+	Silent	SNP	C	T	T	rs146909225	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:72184519C>T	uc002fcc.3	-	5	796	c.624G>A	c.(622-624)GGG>GGA	p.G208G	PMFBP1_uc002fcd.2_Silent_p.G208G|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Silent_p.G63G	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	208										ovary(2)	2		Ovarian(137;0.179)				GACCCATGATCCCGCCGAGTT	0.527													70	143					0	0	0.003610	0	0
CHST5	23563	broad.mit.edu	37	16	75564126	75564126	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:75564126G>A	uc002fei.2	-	3	1552	c.157C>T	c.(157-159)CCC>TCC	p.P53S	CHST5_uc002fej.1_Missense_Mutation_p.P59S	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	53	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GGGGATGAGGGCCCTGGCCGG	0.662													10	30					0	0	0.000978	0	0
CDYL2	124359	broad.mit.edu	37	16	80638393	80638393	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:80638393C>T	uc002ffs.2	-	7	1518	c.1413G>A	c.(1411-1413)CTG>CTA	p.L471L		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	471						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						TCACGTCTTCCAGCACTGATT	0.527													27	118					0	0	0.007291	0	0
ATP2C2	9914	broad.mit.edu	37	16	84438821	84438821	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr16:84438821G>A	uc002fhx.2	+	3	387	c.298G>A	c.(298-300)GAA>AAA	p.E100K	ATP2C2_uc010chj.2_Missense_Mutation_p.E100K|ATP2C2_uc002fhy.2_Missense_Mutation_p.E117K|ATP2C2_uc002fhz.2_5'Flank	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	100	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						TGACAACAGCGAACCTGTGTG	0.547													17	25					0	0	0.004990	0	0
METT10D	79066	broad.mit.edu	37	17	2323535	2323535	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:2323535C>A	uc002fut.2	-	10	1566	c.1418G>T	c.(1417-1419)GGG>GTG	p.G473V	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Intron|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_Missense_Mutation_p.G255V	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	473							methyltransferase activity				0						AACCTCCACCCCTCCCTTTTC	0.612													43	146					5.34276e-22	7.26252e-22	0.003610	1	0
OR1D2	4991	broad.mit.edu	37	17	2995652	2995652	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:2995652G>A	uc010vrb.1	-	1	639	c.639C>T	c.(637-639)TTC>TTT	p.F213F		NM_002548	NP_002539	P34982	OR1D2_HUMAN	olfactory receptor, family 1, subfamily D,	213	Helical; Name=5; (Potential).				cellular component movement|chemotaxis|protein import into nucleus, translocation|sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1						AAATGATCACGAATCCAAAGG	0.448													15	73					0	0	0.004990	0	0
OR1G1	8390	broad.mit.edu	37	17	3030147	3030147	+	Silent	SNP	C	T	T	rs146714964	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:3030147C>T	uc002fvc.1	-	1	699	c.699G>A	c.(697-699)GGG>GGA	p.G233G		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTTCCGCTTCCCCTGAGCTG	0.488													13	43					0	0	0.001855	0	0
P2RX5	5026	broad.mit.edu	37	17	3594945	3594945	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:3594945G>A	uc002fwi.2	-	2	565	c.281C>T	c.(280-282)CCA>CTA	p.P94L	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Missense_Mutation_p.P94L|P2RX5_uc010vrx.1_Missense_Mutation_p.P58L|P2RX5_uc002fwj.2_Missense_Mutation_p.P94L|P2RX5_uc002fwk.2_Missense_Mutation_p.P94L|P2RX5_uc002fwl.2_Missense_Mutation_p.P94L|P2RX5_uc002fwm.1_Missense_Mutation_p.P94L	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	94	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						GACCTGGGCTGGAATGACGTA	0.617													27	48					0	0	0.006320	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4457109	4457109	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:4457109G>A	uc002fyb.3	-	5	619	c.557C>T	c.(556-558)TCC>TTC	p.S186F	MYBBP1A_uc002fxz.3_Missense_Mutation_p.S186F	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	186	Interaction with MYB (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						TCATACCTCGGAGAGGATGTC	0.547													5	28					0	0	0.001168	0	0
PLD2	5338	broad.mit.edu	37	17	4714154	4714154	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:4714154C>T	uc002fzc.2	+	10	1019	c.918C>T	c.(916-918)ATC>ATT	p.I306I	PLD2_uc010vsj.1_Silent_p.I163I|PLD2_uc002fzd.2_Silent_p.I306I	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	306	PH.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	CCCAAGAGATCACTGAGCTGG	0.617													13	71					0	0	0.001855	0	0
USP6	9098	broad.mit.edu	37	17	5048705	5048705	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:5048705G>A	uc002gau.1	+	27	4228	c.1998G>A	c.(1996-1998)TGG>TGA	p.W666*	USP6_uc002gav.1_Nonsense_Mutation_p.W666*|USP6_uc010ckz.1_Nonsense_Mutation_p.W349*	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	666					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						GCTAGGCCTGGGACAACCATC	0.343			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								9	37					0	0	0.006214	0	0
SLC13A5	284111	broad.mit.edu	37	17	6606305	6606305	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:6606305G>T	uc002gdj.2	-	5	788	c.700C>A	c.(700-702)CTG>ATG	p.L234M	SLC13A5_uc010vtf.1_Missense_Mutation_p.L234M|SLC13A5_uc010clq.2_Missense_Mutation_p.L191M|SLC13A5_uc002gdk.2_Missense_Mutation_p.L217M|SLC13A5_uc002gdl.1_Missense_Mutation_p.L216M	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	234	Helical; (Potential).					integral to membrane	citrate transmembrane transporter activity				0						ATCTGGCCCAGGAGCACCACG	0.652													32	50					9.65963e-10	1.29694e-09	0.003271	1	0
BCL6B	255877	broad.mit.edu	37	17	6928507	6928507	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:6928507C>T	uc002geg.2	+	5	934	c.877C>T	c.(877-879)CGT>TGT	p.R293C	BCL6B_uc010clt.1_Missense_Mutation_p.R294C	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	293						nucleus	zinc ion binding			skin(1)	1						TGAACGGGCTCGTCCACTACC	0.547													38	141					0	0	0.003610	0	0
NLGN2	57555	broad.mit.edu	37	17	7311998	7311998	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:7311998C>T	uc002ggt.1	+	1	497	c.424C>T	c.(424-426)CTG>TTG	p.L142L		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	142	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				CGAGGACTGCCTGTACCTCAA	0.652													12	21					0	0	0.001855	0	0
NLGN2	57555	broad.mit.edu	37	17	7318839	7318839	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:7318839C>T	uc002ggt.1	+	6	1120	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I		NM_020795	NP_065846	Q8NFZ4	NLGN2_HUMAN	neuroligin 2 precursor	349	Extracellular (Potential).				cell-cell junction maintenance|neuron cell-cell adhesion|positive regulation of synaptogenesis|regulation of inhibitory postsynaptic membrane potential|synapse assembly	cell surface|integral to plasma membrane|postsynaptic membrane	neurexin binding|receptor activity			central_nervous_system(1)	1		Prostate(122;0.157)				GCTACCACATCGCCTTTGGGC	0.607													10	55					0	0	0.008291	0	0
TP53	7157	broad.mit.edu	37	17	7577559	7577559	+	Missense_Mutation	SNP	G	A	A	rs28934573		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:7577559G>A	uc002gim.2	-	7	916	c.722C>T	c.(721-723)TCC>TTC	p.S241F	TP53_uc002gig.1_Missense_Mutation_p.S241F|TP53_uc002gih.2_Missense_Mutation_p.S241F|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.S109F|TP53_uc010cng.1_Missense_Mutation_p.S109F|TP53_uc002gii.1_Missense_Mutation_p.S109F|TP53_uc010cnh.1_Missense_Mutation_p.S241F|TP53_uc010cni.1_Missense_Mutation_p.S241F|TP53_uc002gij.2_Missense_Mutation_p.S241F|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.S148F|TP53_uc002gio.2_Missense_Mutation_p.S109F	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	241	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		S -> A (in sporadic cancers; somatic mutation).|S -> P (in sporadic cancers; somatic mutation).|S -> C (in sporadic cancers; somatic mutation).|S -> Y (in sporadic cancers; somatic mutation).|S -> T (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.S241F(73)|p.S241C(24)|p.S241fs*6(8)|p.0?(7)|p.S241Y(7)|p.C242fs*5(6)|p.S241A(6)|p.S241del(5)|p.S241T(5)|p.N239_C242delNSSC(3)|p.S241S(3)|p.S241P(3)|p.S241fs*22(2)|p.Y236_M243delYMCNSSCM(1)|p.N239fs*4(1)|p.C238_M246delCNSSCMGGM(1)|p.S241_C242insX(1)|p.S241_G245delSCMGG(1)|p.C238fs*21(1)|p.S241fs*7(1)|p.H233_C242del10(1)|p.N239_C242>S(1)|p.S241fs*23(1)|p.N239_C242del(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCCCATGCAGGAACTGTTACA	0.572		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			42	49					0	0	0.003610	0	0
DNAH2	146754	broad.mit.edu	37	17	7691218	7691218	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:7691218C>T	uc002giu.1	+	42	6658	c.6644C>T	c.(6643-6645)TCT>TTT	p.S2215F		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	2215	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCAATGGCCTCTCCGGCCACT	0.527													24	50					0	0	0.003330	0	0
CCDC42	146849	broad.mit.edu	37	17	8633523	8633523	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:8633523G>A	uc002gln.2	-	7	1103	c.876C>T	c.(874-876)ATC>ATT	p.I292I	CCDC42_uc002glo.2_Silent_p.I218I	NM_144681	NP_653282	Q96M95	CCD42_HUMAN	coiled-coil domain containing 42 isoform 1	292										ovary(1)	1						TAAATTGCTGGATCTAGAAAG	0.517													4	49					0	0	0.000248	0	0
PIK3R6	146850	broad.mit.edu	37	17	8739899	8739899	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:8739899C>T	uc002glq.1	-	7	666	c.426G>A	c.(424-426)CAG>CAA	p.Q142Q	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	142					platelet activation	cytosol					0						TCGTCAAGTTCTGTTCGGCAA	0.507													21	40					0	0	0.003330	0	0
MYH13	8735	broad.mit.edu	37	17	10223547	10223547	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:10223547G>A	uc002gmk.1	-	26	3361	c.3271C>T	c.(3271-3273)CTC>TTC	p.L1091F	MYH13_uc010vve.1_3'UTR	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1091	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						AACTGACTGAGTTCAAACTCC	0.378													8	14					0	0	0.006214	0	0
MYH4	4622	broad.mit.edu	37	17	10366196	10366196	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:10366196G>A	uc002gmn.2	-	11	1105	c.994C>T	c.(994-996)CTG>TTG	p.L332L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	332	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GTGGCCATCAGCTCTTCCTGG	0.433													21	81					0	0	0.002780	0	0
MYH2	4620	broad.mit.edu	37	17	10429959	10429959	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:10429959C>T	uc010coi.2	-	30	4272	c.4144G>A	c.(4144-4146)GAG>AAG	p.E1382K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1382K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1382	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCGTCCGTCTCGTATTTGGTC	0.532													63	118					0	0	0.003610	0	0
DNAH9	1770	broad.mit.edu	37	17	11622780	11622780	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:11622780C>T	uc002gne.2	+	27	5750	c.5682C>T	c.(5680-5682)TTC>TTT	p.F1894F	DNAH9_uc010coo.2_Silent_p.F1188F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1894	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TCTATGTGTTCAACTGCTCGG	0.607													16	66					0	0	0.004990	0	0
TRIM16	10626	broad.mit.edu	37	17	15539401	15539401	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:15539401C>T	uc002gox.2	-	6	1355	c.798G>A	c.(796-798)AAG>AAA	p.K266K	TRIM16_uc002gor.1_Silent_p.K266K|TRIM16_uc002gow.2_Silent_p.K50K|TRIM16_uc002goy.2_Silent_p.K136K	NM_006470	NP_006461	O95361	TRI16_HUMAN	tripartite motif-containing 16	266	Potential.				histone H3 acetylation|histone H4 acetylation|positive regulation of interleukin-1 beta secretion|positive regulation of keratinocyte differentiation|positive regulation of retinoic acid receptor signaling pathway|positive regulation of transcription, DNA-dependent|response to growth hormone stimulus|response to organophosphorus|response to retinoic acid	cytoplasm|plasma membrane|PML body	DNA binding|interleukin-1 binding|NACHT domain binding|zinc ion binding			ovary(2)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0839)|Epithelial(1;8.4e-29)|all cancers(1;3.06e-28)|Colorectal(1;1.57e-19)|OV - Ovarian serous cystadenocarcinoma(1;6.1e-17)|COAD - Colon adenocarcinoma(1;3.38e-12)|READ - Rectum adenocarcinoma(2;1.46e-05)|BRCA - Breast invasive adenocarcinoma(8;0.0559)		CCAGCTCCTGCTTGCTCTTCT	0.592													13	65					0	0	0.003163	0	0
RNF112	7732	broad.mit.edu	37	17	19316290	19316290	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:19316290C>T	uc010vyw.1	+	4	620	c.421C>T	c.(421-423)CGC>TGC	p.R141C	RNF112_uc010vyu.1_Missense_Mutation_p.R141C|RNF112_uc010vyv.1_Missense_Mutation_p.R141C|RNF112_uc010vyx.1_Intron	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	141							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						GCTGCTGGTTCGCATCAATGC	0.647													5	19					0	0	0.000602	0	0
LGALS9B	284194	broad.mit.edu	37	17	20361578	20361578	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:20361578G>A	uc002gxa.1	-	3	316	c.251C>T	c.(250-252)CCC>CTC	p.P84L	LGALS9B_uc002gwz.1_Missense_Mutation_p.P84L|LGALS9B_uc010vzh.1_5'UTR	NM_001042685	NP_001036150	Q3B8N2	LEG9B_HUMAN	galectin-9 like	84	Beta-galactoside binding 1 (By similarity).|Galectin 1.						sugar binding			skin(1)	1						CCTCTCCTCGGGCCCCCATCT	0.552													36	69					0	0	0.006999	0	0
MAP2K3	5606	broad.mit.edu	37	17	21215489	21215489	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:21215489C>T	uc002gys.2	+	10	1075	c.810C>T	c.(808-810)TCC>TCT	p.S270S	MAP2K3_uc002gyt.2_Silent_p.S241S|MAP2K3_uc002gyu.2_Silent_p.S241S	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	270	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		CTTACGAGTCCTGGGGGACCC	0.657													15	39					0	0	0.002450	0	0
LGALS9	3965	broad.mit.edu	37	17	25974374	25974374	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:25974374C>T	uc002gzp.2	+	10	955	c.837C>T	c.(835-837)CGC>CGT	p.R279R	LGALS9_uc002gzq.2_Silent_p.R247R|LGALS9_uc002gzr.2_Silent_p.R190R|LGALS9_uc010waa.1_Intron|LGALS9_uc002gzs.2_Intron	NM_009587	NP_033665	O00182	LEG9_HUMAN	galectin-9 isoform long	279	Galectin 2.				positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	galactose binding|signal transducer activity				0	Lung NSC(42;0.0103)		BRCA - Breast invasive adenocarcinoma(3;0.0141)	UCEC - Uterine corpus endometrioid carcinoma (53;0.155)		CTGTGGTCCGCAACACCCAGA	0.592													14	61					0	0	0.002450	0	0
TNFAIP1	7126	broad.mit.edu	37	17	26671537	26671537	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:26671537C>T	uc002hax.1	+	7	881	c.862C>T	c.(862-864)CTG>TTG	p.L288L	TNFAIP1_uc002hay.2_Silent_p.L288L|TNFAIP1_uc010waf.1_Silent_p.L184L	NM_021137	NP_066960	Q13829	BACD2_HUMAN	tumor necrosis factor, alpha-induced protein 1	288					apoptosis|cell migration|DNA replication|embryo development|immune response|negative regulation of Rho protein signal transduction|proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|endosome|nucleus|voltage-gated potassium channel complex	GTP-Rho binding|voltage-gated potassium channel activity				0	all_lung(13;0.000294)|Lung NSC(42;0.000964)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)		GACCTTTGAACTGCGGGACCG	0.617													11	51					0	0	0.001368	0	0
KIAA0100	9703	broad.mit.edu	37	17	26943163	26943163	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:26943163G>A	uc002hbu.2	-	37	6440	c.6341C>T	c.(6340-6342)TCC>TTC	p.S2114F	SGK494_uc010waq.1_5'Flank|SGK494_uc010war.1_5'Flank|SGK494_uc002hbr.1_5'Flank|uc002hbs.1_Intron|KIAA0100_uc002hbt.2_Missense_Mutation_p.S443F	NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	2114						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					GTAGATGAAGGAGTTGTTCAT	0.478													17	49					0	0	0.006122	0	0
MYO18A	399687	broad.mit.edu	37	17	27448924	27448924	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:27448924A>C	uc002hdt.1	-	4	1297	c.1139T>G	c.(1138-1140)GTG>GGG	p.V380G	MYO18A_uc010wbc.1_5'Flank|MYO18A_uc002hds.2_5'UTR|MYO18A_uc010csa.1_Missense_Mutation_p.V380G|MYO18A_uc002hdu.1_Missense_Mutation_p.V380G|MYO18A_uc010wbd.1_Missense_Mutation_p.V49G	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	380					anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			GTCCAGCTTCACACGCACCTT	0.612													26	63					0	0	0.005443	0	0
TBC1D29	26083	broad.mit.edu	37	17	28887652	28887652	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:28887652C>T	uc002hfh.2	+	3	245	c.96C>T	c.(94-96)ACC>ACT	p.T32T	TBC1D29_uc002hfi.2_RNA|uc002hfj.1_5'Flank	NM_015594	NP_056409	Q9UFV1	TBC29_HUMAN	TBC1 domain family, member 29	32	Rab-GAP TBC; truncated.					intracellular	Rab GTPase activator activity				0		Myeloproliferative disorder(56;0.0255)				TCGGGCTCACCCCGTGCCTGT	0.557													23	66					0	0	0.002780	0	0
GPR179	440435	broad.mit.edu	37	17	36485713	36485713	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:36485713C>T	uc002hpz.2	-	11	3760	c.3739G>A	c.(3739-3741)GAG>AAG	p.E1247K		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1247	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TCAGTGACCTCCCAGGGGCAT	0.607													38	113					0	0	0.005524	0	0
GPR179	440435	broad.mit.edu	37	17	36499539	36499539	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:36499539C>T	uc002hpz.2	-	1	155	c.134G>A	c.(133-135)GGA>GAA	p.G45E		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	45	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				GGGTACAGATCCTGGCTTGAC	0.622													9	79					0	0	0.008291	0	0
GSDMB	55876	broad.mit.edu	37	17	38068655	38068655	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:38068655G>A	uc010cwj.2	-	2	336	c.331C>T	c.(331-333)CAG>TAG	p.Q111*	GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Nonsense_Mutation_p.Q111*|GSDMB_uc002hth.2_Nonsense_Mutation_p.Q111*|GSDMB_uc010wem.1_Nonsense_Mutation_p.Q111*	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	111						cytoplasm				breast(1)|pancreas(1)	2						TGGAAGCCCTGGAAACTGCCT	0.453													28	51					0	0	0.007291	0	0
KRT25	147183	broad.mit.edu	37	17	38907543	38907544	+	Missense_Mutation	DNP	GT	CA	CA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:38907543_38907544GT>CA	uc002hve.2	-	4	765_766	c.704_705AC>TG	c.(703-705)AAC>ATG	p.N235M		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	235	Rod.|Linker 12.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				CCACGTTCACGTTGCCTCCAGC	0.52													10	36					0	0	0.004672	0	0
KRT36	8689	broad.mit.edu	37	17	39643395	39643395	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:39643395C>T	uc002hwt.2	-	6	1015	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	339	Rod.|Coil 2.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				GCCTCGGTTTCGGCCAGGGTG	0.622													40	81					0	0	0.003214	0	0
KCNH4	23415	broad.mit.edu	37	17	40323852	40323852	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:40323852G>A	uc002hzb.2	-	7	1482	c.1149C>T	c.(1147-1149)ATC>ATT	p.I383I		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	383	Extracellular (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CCCGGCGCCCGATGACATACC	0.612													31	61					0	0	0.002836	0	0
MEOX1	4222	broad.mit.edu	37	17	41720979	41720979	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:41720979C>A	uc002idz.2	-	2	548	c.519G>T	c.(517-519)AAG>AAT	p.K173N	MEOX1_uc002iea.2_Intron|MEOX1_uc002ieb.2_Missense_Mutation_p.K58N	NM_004527	NP_004518	P50221	MEOX1_HUMAN	mesenchyme homeobox 1 isoform 1	173	Homeobox.					nucleus	sequence-specific DNA binding				0		Breast(137;0.00908)		BRCA - Breast invasive adenocarcinoma(366;0.0753)		CCGTCCTCTCCTTGCGGGCTT	0.582													13	30					7.93312e-07	1.05922e-06	0.002450	1	0
CD300LG	146894	broad.mit.edu	37	17	41926251	41926251	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:41926251C>T	uc002iem.2	+	2	410	c.369C>T	c.(367-369)TTC>TTT	p.F123F	CD300LG_uc002iek.1_Silent_p.F123F|CD300LG_uc002iel.1_Silent_p.F123F|CD300LG_uc010czk.2_Silent_p.F123F|CD300LG_uc010wil.1_Silent_p.F123F|CD300LG_uc010czl.2_Silent_p.F123F	NM_145273	NP_660316	Q6UXG3	CLM9_HUMAN	CD300 molecule-like family member g precursor	123	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|integral to membrane|multivesicular body membrane	receptor activity				0		Breast(137;0.0199)		BRCA - Breast invasive adenocarcinoma(366;0.115)		TCTCTCTGTTCGTCTTTCCAG	0.557													21	45					0	0	0.001523	0	0
GRN	2896	broad.mit.edu	37	17	42428479	42428479	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:42428479C>T	uc002igp.1	+	8	1002	c.783C>T	c.(781-783)CTC>CTT	p.L261L	GRN_uc002igr.1_Silent_p.L55L	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	261					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GTAAGTGCCTCTCCAAGGAGA	0.617											OREG0024459	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	71					0	0	0.004990	0	0
ITGA2B	3674	broad.mit.edu	37	17	42452071	42452071	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:42452071G>A	uc002igt.1	-	28	2931	c.2899C>T	c.(2899-2901)CCC>TCC	p.P967S	ITGA2B_uc002igu.1_3'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	967	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	ACCGCATAGGGGAGGGAGGAC	0.622													30	57					0	0	0.002445	0	0
IMP5	162540	broad.mit.edu	37	17	43924223	43924223	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:43924223C>T	uc010wka.1	+	1	1951	c.1951C>T	c.(1951-1953)CAT>TAT	p.H651Y	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	651	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		GGGCCATGTCCATGCCCAGGC	0.642													31	44					0	0	0.008361	0	0
KIAA1267	284058	broad.mit.edu	37	17	44128027	44128027	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:44128027G>A	uc002ikb.2	-	6	1977	c.1892C>T	c.(1891-1893)CCC>CTC	p.P631L	KIAA1267_uc002ikc.2_Missense_Mutation_p.P631L|KIAA1267_uc002ikd.2_Missense_Mutation_p.P631L|KIAA1267_uc010dav.2_Missense_Mutation_p.P631L	NM_015443	NP_056258	Q7Z3B3	K1267_HUMAN	hypothetical protein LOC284058	631						MLL1 complex	protein binding			skin(2)	2		Melanoma(429;0.211)				TGCGCAGGAGGGATTCACATC	0.498													10	17					0	0	0.000978	0	0
CDC27	996	broad.mit.edu	37	17	45221283	45221283	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:45221283G>A	uc002ild.3	-	10	1263	c.1136C>T	c.(1135-1137)TCA>TTA	p.S379L	CDC27_uc002ile.3_Missense_Mutation_p.S385L|CDC27_uc002ilf.3_Missense_Mutation_p.S379L|CDC27_uc010wkp.1_Missense_Mutation_p.S318L|CDC27_uc010wkq.1_Intron	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	379					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						AAAGAGTCGTGAACTTCTTCG	0.373													12	25					0	0	0.001855	0	0
CDC27	996	broad.mit.edu	37	17	45232057	45232057	+	Missense_Mutation	SNP	G	A	A	rs150116111		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:45232057G>A	uc002ild.3	-	8	1065	c.938C>T	c.(937-939)ACC>ATC	p.T313I	CDC27_uc002ile.3_Missense_Mutation_p.T313I|CDC27_uc002ilf.3_Missense_Mutation_p.T313I|CDC27_uc010wkp.1_Missense_Mutation_p.T252I|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	313					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						AGGGGCTCCGGTGGATGGCAC	0.378													9	17					0	0	0.008291	0	0
ITGB3	3690	broad.mit.edu	37	17	45369775	45369775	+	Missense_Mutation	SNP	G	A	A	rs150951945		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:45369775G>A	uc002ilj.2	+	10	1551	c.1531G>A	c.(1531-1533)GAA>AAA	p.E511K	ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	511	I.|Extracellular (Potential).|Cysteine-rich tandem repeats.				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	CCAGCAGGACGAATGCAGCCC	0.627													14	79					0	0	0.002450	0	0
MKS1	54903	broad.mit.edu	37	17	56291736	56291736	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:56291736G>A	uc002ivr.1	-	6	603	c.528C>T	c.(526-528)ATC>ATT	p.I176I	MKS1_uc010wnq.1_5'UTR|MKS1_uc002ivs.1_Silent_p.I176I	NM_017777	NP_060247	Q9NXB0	MKS1_HUMAN	Meckel syndrome type 1 protein isoform 1	176					cilium assembly	centrosome|cilium|microtubule basal body	protein binding			ovary(1)	1						GTGACTTGAGGATGCCGCCCT	0.557													10	57					0	0	0.008291	0	0
SCN4A	6329	broad.mit.edu	37	17	62018757	62018757	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:62018757G>A	uc002jds.1	-	24	4962	c.4885C>T	c.(4885-4887)CCC>TCC	p.P1629S		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1629					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GTGGCGTCGGGGTCGAACTTC	0.552													9	50					0	0	0.004482	0	0
ICAM2	3384	broad.mit.edu	37	17	62081054	62081054	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:62081054C>T	uc002jdu.3	-	3	831	c.599G>A	c.(598-600)GGT>GAT	p.G200D	C17orf72_uc002jdt.3_3'UTR|C17orf72_uc010wpu.1_3'UTR|C17orf72_uc010wpv.1_3'UTR|C17orf72_uc010wpw.1_3'UTR|ICAM2_uc002jdw.3_Missense_Mutation_p.G200D|ICAM2_uc010ded.2_Missense_Mutation_p.G200D|ICAM2_uc002jdx.3_Missense_Mutation_p.G200D|ICAM2_uc002jdv.3_Missense_Mutation_p.G200D	NM_000873	NP_000864	P13598	ICAM2_HUMAN	intercellular adhesion molecule 2 precursor	200	Extracellular (Potential).				cell-cell adhesion|regulation of immune response	integral to plasma membrane	integrin binding			ovary(1)	1						GATGTTGCCACCGCGAGACAT	0.567													11	60					0	0	0.000978	0	0
CCDC45	90799	broad.mit.edu	37	17	62504805	62504805	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:62504805C>T	uc002jem.2	+	2	173	c.115C>T	c.(115-117)CTT>TTT	p.L39F	CCDC45_uc002jen.2_RNA|CCDC45_uc010wqb.1_5'UTR|DDX5_uc010deh.2_5'Flank|DDX5_uc002jek.2_5'Flank|DDX5_uc002jej.2_5'Flank|DDX5_uc010wqa.1_5'Flank	NM_138363	NP_612372	Q96GE4	CEP95_HUMAN	coiled-coil domain containing 45	39						centrosome|spindle pole	protein binding				0	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			TTTTATTGCTCTTTATCAGTC	0.338													15	87					0	0	0.004990	0	0
SMURF2	64750	broad.mit.edu	37	17	62594596	62594596	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:62594596G>A	uc002jep.1	-	3	492	c.104C>T	c.(103-105)CCA>CTA	p.P35L	SMURF2_uc002jeq.1_5'UTR|SMURF2_uc002jer.1_5'UTR	NM_022739	NP_073576	Q9HAU4	SMUF2_HUMAN	SMAD specific E3 ubiquitin protein ligase 2	35	C2.				BMP signaling pathway|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent SMAD protein catabolic process	cytosol|membrane raft|nucleus|plasma membrane|ubiquitin ligase complex	identical protein binding|SMAD binding|ubiquitin-protein ligase activity			skin(3)|lung(1)	4	Breast(5;1.32e-14)		BRCA - Breast invasive adenocarcinoma(8;9.88e-12)			CTTAGCAAATGGATCAGGAAG	0.343													14	66					0	0	0.002450	0	0
RGS9	8787	broad.mit.edu	37	17	63206615	63206616	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:63206615_63206616CC>TT	uc002jfe.2	+	17	1409_1410	c.1299_1300CC>TT	c.(1297-1302)CTCCCT>CTTTCT	p.P434S	RGS9_uc010dem.2_Missense_Mutation_p.P431S|RGS9_uc002jfd.2_Missense_Mutation_p.P431S|RGS9_uc002jff.2_RNA|RGS9_uc002jfg.2_Missense_Mutation_p.P205S	NM_003835	NP_003826	O75916	RGS9_HUMAN	regulator of G-protein signaling 9 isoform 1	434					intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway|visual perception	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|signal transducer activity			ovary(2)|skin(2)	4						GCTCCACCCTCCCTTTTATGCG	0.574													28	93					0	0	0.004672	0	0
BPTF	2186	broad.mit.edu	37	17	65908241	65908241	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:65908241C>T	uc002jgf.2	+	11	4302	c.4241C>T	c.(4240-4242)CCC>CTC	p.P1414L	BPTF_uc002jge.2_Missense_Mutation_p.P1540L	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1540					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			GATAATAAACCCAAAATATAT	0.274													12	71					0	0	0.001855	0	0
LOC651250	651250	broad.mit.edu	37	17	66131766	66131766	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:66131766C>T	uc002jgq.2	+	6		c.10889C>T			LOC651250_uc002kit.2_RNA|LOC651250_uc002jgo.1_Intron	NR_027418				Homo sapiens cDNA FLJ33831 fis, clone CTONG2003937.												0						GCCGCGGAACCTTCCGCCCAG	0.692													10	9					0	0	0.008291	0	0
ABCA9	10350	broad.mit.edu	37	17	66980286	66980286	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:66980286C>T	uc002jhu.2	-	35	4553	c.4410G>A	c.(4408-4410)ACG>ACA	p.T1470T	ABCA9_uc010dez.2_Silent_p.T1432T	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1470	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					CGCCCCTCTCCGTGTTTCTAA	0.517													19	70					0	0	0.008871	0	0
PRPSAP1	5635	broad.mit.edu	37	17	74328391	74328391	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:74328391C>T	uc010wta.1	-	4	862	c.416G>A	c.(415-417)AGG>AAG	p.R139K	PRPSAP1_uc010wtb.1_Missense_Mutation_p.R36K	NM_002766	NP_002757	Q14558	KPRA_HUMAN	phosphoribosyl pyrophosphate	110					nucleotide biosynthetic process		enzyme inhibitor activity|identical protein binding|magnesium ion binding|ribose phosphate diphosphokinase activity			ovary(1)	1						AATGGAACCCCTCTTCCTCAT	0.552													26	147					0	0	0.008361	0	0
FASN	2194	broad.mit.edu	37	17	80038687	80038687	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:80038687G>A	uc002kdu.2	-	39	6824	c.6707C>T	c.(6706-6708)TCC>TTC	p.S2236F	FASN_uc002kdv.1_RNA	NM_004104	NP_004095	P49327	FAS_HUMAN	fatty acid synthase	2236	Thioesterase (By similarity).				energy reserve metabolic process|fatty acid biosynthetic process|long-chain fatty-acyl-CoA biosynthetic process|pantothenate metabolic process|positive regulation of cellular metabolic process|triglyceride biosynthetic process	cytosol|Golgi apparatus|melanosome|plasma membrane	3-hydroxypalmitoyl-[acyl-carrier-protein] dehydratase activity|3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity|3-oxoacyl-[acyl-carrier-protein] synthase activity|[acyl-carrier-protein] S-acetyltransferase activity|[acyl-carrier-protein] S-malonyltransferase activity|acyl carrier activity|cofactor binding|enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) activity|myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity|phosphopantetheine binding|protein binding|zinc ion binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		OV - Ovarian serous cystadenocarcinoma(97;0.0211)|BRCA - Breast invasive adenocarcinoma(99;0.0237)		Cerulenin(DB01034)|Orlistat(DB01083)|Pyrazinamide(DB00339)	GCTCTGCACGGAGTTGAGCCG	0.672													16	25					0	0	0.007413	0	0
CCDC57	284001	broad.mit.edu	37	17	80121180	80121180	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:80121180C>T	uc002kdz.1	-	14	2291	c.1936G>A	c.(1936-1938)GGA>AGA	p.G646R	CCDC57_uc002kdx.1_Missense_Mutation_p.G646R|CCDC57_uc010dik.1_Missense_Mutation_p.G154R	NM_198082	NP_932348	Q2TAC2	CCD57_HUMAN	coiled-coil domain containing 57	646										ovary(2)	2	Breast(20;0.00285)|all_neural(118;0.0878)|all_lung(278;0.0949)|Lung NSC(278;0.128)|Ovarian(332;0.227)		BRCA - Breast invasive adenocarcinoma(99;0.0232)|OV - Ovarian serous cystadenocarcinoma(97;0.0253)			ACAGATCCTCCTGCTTGACCA	0.572													39	56					0	0	0.005524	0	0
CD7	924	broad.mit.edu	37	17	80274553	80274553	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:80274553G>A	uc002kel.1	-	2	496	c.387C>T	c.(385-387)GTC>GTT	p.V129V	CD7_uc010din.2_Silent_p.V129V|CD7_uc002kem.2_Missense_Mutation_p.P111S|CD7_uc010wvk.1_Silent_p.V129V	NM_006137	NP_006128	P09564	CD7_HUMAN	CD7 antigen precursor	129	Ig-like.|Extracellular (Probable).				immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|membrane fraction|plasma membrane	receptor activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0667)			CTGTCACCAGGACCAGGGTGC	0.652													18	115					0	0	0.008871	0	0
CD7	924	broad.mit.edu	37	17	80274811	80274811	+	Silent	SNP	G	A	A	rs139943005		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr17:80274811G>A	uc002kel.1	-	2	238	c.129C>T	c.(127-129)TCC>TCT	p.S43S	CD7_uc010din.2_Silent_p.S43S|CD7_uc002kem.2_Missense_Mutation_p.R25C|CD7_uc010wvk.1_Silent_p.S43S	NM_006137	NP_006128	P09564	CD7_HUMAN	CD7 antigen precursor	43	Ig-like.|Extracellular (Probable).				immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|membrane fraction|plasma membrane	receptor activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0667)			TGATGTTGACGGAGGCTCCCA	0.632													22	33					0	0	0.002299	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258394	9258394	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:9258394A>G	uc002knv.2	+	9	5386	c.5129A>G	c.(5128-5130)TAT>TGT	p.Y1710C	ANKRD12_uc002knw.2_Missense_Mutation_p.Y1687C|ANKRD12_uc002knx.2_Missense_Mutation_p.Y1687C|ANKRD12_uc010dkx.1_Missense_Mutation_p.Y1417C	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1710						nucleus				ovary(2)|central_nervous_system(1)	3						ATGCATAAATATGGTCAGTTA	0.338													3	28					0	0	0.004672	0	0
POTEC	388468	broad.mit.edu	37	18	14534953	14534953	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:14534953C>T	uc010dln.2	-	4	1318	c.864G>A	c.(862-864)GTG>GTA	p.V288V	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	288	ANK 5.									skin(3)	3						TTAAAAATTTCACCACTTGCT	0.299													10	62					0	0	0.001882	0	0
CTAGE1	64693	broad.mit.edu	37	18	19997471	19997471	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:19997471C>T	uc002ktv.1	-	1	408	c.304G>A	c.(304-306)GAA>AAA	p.E102K		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	102	Potential.					integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					TTCAGCTTTTCGCAGGTTGCC	0.363													116	160					0	0	0.003610	0	0
LAMA3	3909	broad.mit.edu	37	18	21478738	21478738	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:21478738C>T	uc002kuq.2	+	45	5736	c.5650C>T	c.(5650-5652)CAT>TAT	p.H1884Y	LAMA3_uc002kur.2_Missense_Mutation_p.H1884Y|LAMA3_uc002kus.3_Missense_Mutation_p.H275Y|LAMA3_uc002kut.3_Missense_Mutation_p.H275Y	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1884	Domain II and I.|Potential.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CATTTCAAATCATGGATCAAA	0.358													25	44					0	0	0.007291	0	0
OSBPL1A	114876	broad.mit.edu	37	18	21897151	21897151	+	Missense_Mutation	SNP	G	A	A	rs144234125		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:21897151G>A	uc002kve.2	-	11	1006	c.832C>T	c.(832-834)CGC>TGC	p.R278C	OSBPL1A_uc002kvf.3_Missense_Mutation_p.R58C	NM_080597	NP_542164	Q9BXW6	OSBL1_HUMAN	oxysterol-binding protein-like 1A isoform B	278	PH.				cholesterol metabolic process|lipid transport|vesicle-mediated transport		phospholipid binding			ovary(4)	4	all_cancers(21;0.000396)|all_epithelial(16;4.36e-06)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0505)|Ovarian(20;0.17)					CATCCCTGGCGATAAATATTA	0.348													32	50					0	0	0.004289	0	0
HRH4	59340	broad.mit.edu	37	18	22057250	22057250	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:22057250G>A	uc002kvi.2	+	3	997	c.897G>A	c.(895-897)AGG>AGA	p.R299R	HRH4_uc010xbd.1_3'UTR|HRH4_uc010dlx.2_Silent_p.R211R	NM_021624	NP_067637	Q9H3N8	HRH4_HUMAN	histamine H4 receptor isoform 1	299	Cytoplasmic (Potential).					integral to membrane|plasma membrane	histamine receptor activity			ovary(2)	2	all_cancers(21;0.000545)|all_epithelial(16;6.56e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)				Clozapine(DB00363)	TTAGAGCCAGGAGATTAGCCA	0.423													80	139					0	0	0.003610	0	0
DSG1	1828	broad.mit.edu	37	18	28923481	28923481	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:28923481G>A	uc002kwp.2	+	12	1968	c.1756G>A	c.(1756-1758)GTT>ATT	p.V586I	DSG1_uc010xbp.1_5'Flank	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	586	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			CTTTGAGCCTGTTCCCGAATG	0.483													10	99					0	0	0.006214	0	0
DSG1	1828	broad.mit.edu	37	18	28934552	28934552	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:28934552C>A	uc002kwp.2	+	15	2605	c.2393C>A	c.(2392-2394)CCA>CAA	p.P798Q	DSG1_uc010xbp.1_Missense_Mutation_p.P157Q	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	798	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGACACCCACCAATCTCCCCA	0.507													10	108					4.68919e-08	6.26788e-08	0.008291	1	0
ASXL3	80816	broad.mit.edu	37	18	31324855	31324855	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:31324855G>A	uc010dmg.1	+	12	5098	c.5043G>A	c.(5041-5043)ATG>ATA	p.M1681I	ASXL3_uc002kxq.2_Missense_Mutation_p.M1388I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1681					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCTTTAGAATGGACACTGAAG	0.483													11	81					0	0	0.000978	0	0
RIT2	6014	broad.mit.edu	37	18	40613800	40613800	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:40613800G>A	uc002lav.2	-	2	309	c.136C>T	c.(136-138)CCT>TCT	p.P46S	RIT2_uc010dnf.2_Missense_Mutation_p.P46S	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	46					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						TGATAATCAGGGAACTGATGA	0.318													13	29					0	0	0.003163	0	0
WDR7	23335	broad.mit.edu	37	18	54424322	54424322	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:54424322T>C	uc002lgk.1	+	15	2709	c.2498T>C	c.(2497-2499)GTA>GCA	p.V833A	WDR7_uc010dpk.1_RNA|WDR7_uc002lgl.1_Missense_Mutation_p.V833A	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	833										ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		CACTGCACCGTATCGTTTGGC	0.493													3	182					0	0	0.000248	0	0
TMX3	54495	broad.mit.edu	37	18	66354939	66354939	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr18:66354939A>C	uc002lkf.2	-	10	836	c.701T>G	c.(700-702)ATG>AGG	p.M234R	TMX3_uc010xez.1_Missense_Mutation_p.M93R	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor	234	Lumenal (Potential).				cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						GAAGCCATCCATAGCAAGGTA	0.338													36	75					0	0	0.007835	0	0
KHSRP	8570	broad.mit.edu	37	19	6418802	6418802	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:6418802G>A	uc002mer.3	-	8	801	c.691C>T	c.(691-693)CAG>TAG	p.Q231*		NM_003685	NP_003676	Q92945	FUBP2_HUMAN	KH-type splicing regulatory protein	231	Gly-rich.				mRNA processing|mRNA transport|regulation of transcription, DNA-dependent|RNA splicing, via transesterification reactions|transcription, DNA-dependent	cytosol|nucleus	DNA binding|protein binding|RNA binding			skin(1)	1						GTGCCGTTCTGGCCCCCGTTG	0.642													31	35					0	0	0.002836	0	0
SLC25A23	79085	broad.mit.edu	37	19	6454590	6454590	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:6454590G>A	uc002mex.1	-	5	764	c.622C>T	c.(622-624)CGC>TGC	p.R208C	SLC25A23_uc002mev.2_RNA|SLC25A23_uc010xjd.1_Missense_Mutation_p.R25C	NM_024103	NP_077008	Q9BV35	SCMC3_HUMAN	solute carrier family 25, member 23	208	Solcar 1.|Mitochondrial matrix (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	calcium ion binding			ovary(1)|pancreas(1)	2						ACCTTGAGGCGGTCCAGAGGG	0.642													27	16					0	0	0.005443	0	0
TRIP10	9322	broad.mit.edu	37	19	6750053	6750053	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:6750053G>A	uc002mfs.2	+	12	1437	c.1371G>A	c.(1369-1371)CTG>CTA	p.L457L	TRIP10_uc010dux.1_Silent_p.L401L|TRIP10_uc002mfr.2_Silent_p.L401L|TRIP10_uc010duy.2_RNA|TRIP10_uc010duz.2_Silent_p.L220L	NM_004240	NP_004231	Q15642	CIP4_HUMAN	thyroid hormone receptor interactor 10	457	Interaction with CDC42.|Interaction with PDE6G (By similarity).|REM.				actin cytoskeleton organization|cell communication|endocytosis|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell projection|cytoskeleton|cytosol|Golgi apparatus|lysosome|perinuclear region of cytoplasm|phagocytic cup	GTPase activator activity|identical protein binding|lipid binding			ovary(1)	1						TTGAACGGCTGAAATTGGAAG	0.587													42	57					0	0	0.002852	0	0
PRAM1	84106	broad.mit.edu	37	19	8563167	8563167	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:8563167C>T	uc002mkd.2	-	3	1459	c.1439G>A	c.(1438-1440)CGG>CAG	p.R480Q	PRAM1_uc002mkc.2_Missense_Mutation_p.R480Q	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	528							lipid binding|protein binding				0						GCGGGTCCTCCGTAGATCTGT	0.677													15	14					0	0	0.007413	0	0
PRAM1	84106	broad.mit.edu	37	19	8564341	8564341	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:8564341C>T	uc002mkd.2	-	2	371	c.351G>A	c.(349-351)AAG>AAA	p.K117K	PRAM1_uc002mkc.2_Silent_p.K117K	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	165	Pro-rich.|8.|8 X 12 AA repeats of K-P-P-[PQ]-P-[EQ]- [VAF]-T-D-L-P-K.						lipid binding|protein binding				0						TGGACGGCTTCTTGGGGAGGT	0.647													81	99					0	0	0.003610	0	0
OR2Z1	284383	broad.mit.edu	37	19	8841730	8841730	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:8841730C>T	uc010xkg.1	+	1	340	c.340C>T	c.(340-342)CTG>TTG	p.L114L		NM_001004699	NP_001004699	Q8NG97	OR2Z1_HUMAN	olfactory receptor, family 2, subfamily Z,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2						TGAGGGCGTCCTGTTGGTCCT	0.537													23	32					0	0	0.002299	0	0
MUC16	94025	broad.mit.edu	37	19	9048071	9048071	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:9048071G>A	uc002mkp.2	-	5	33764	c.33560C>T	c.(33559-33561)TCT>TTT	p.S11187F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11189	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTTGCCTCAGAATGGGTGAC	0.458													20	22					0	0	0.001882	0	0
MUC16	94025	broad.mit.edu	37	19	9049971	9049971	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:9049971G>A	uc002mkp.2	-	5	31864	c.31660C>T	c.(31660-31662)CCC>TCC	p.P10554S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10556	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTTGTCCTGGGAAGAGCTGTG	0.488													64	100					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9070705	9070705	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:9070705G>A	uc002mkp.2	-	3	16945	c.16741C>T	c.(16741-16743)CCC>TCC	p.P5581S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5583	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTGTCCCAGGGAAGGATACCC	0.522													72	98					0	0	0.003610	0	0
OR7G1	125962	broad.mit.edu	37	19	9226256	9226256	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:9226256G>A	uc002mks.1	-	1	184	c.184C>T	c.(184-186)CTT>TTT	p.L62F		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TTAAAGAGAAGGAAGTACATG	0.488													44	64					0	0	0.003214	0	0
SLC44A2	57153	broad.mit.edu	37	19	10748390	10748390	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:10748390C>T	uc002mpf.2	+	17	1801	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	SLC44A2_uc002mpe.3_Silent_p.F552F|SLC44A2_uc002mpg.1_Silent_p.F274F|SLC44A2_uc002mph.2_Silent_p.F103F|SLC44A2_uc002mpi.2_5'Flank	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	554	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	TGGAGAAGTTCATCAAATTCC	0.547													42	52					0	0	0.003214	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13928164	13928164	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:13928164C>T	uc002mxh.1	+	7	1504	c.1315C>T	c.(1315-1317)CCA>TCA	p.P439S	ZSWIM4_uc010xng.1_Missense_Mutation_p.P362S	NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	439							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			TACCCTTTACCCAGGTACTCA	0.632													19	32					0	0	0.001523	0	0
CHERP	10523	broad.mit.edu	37	19	16643489	16643489	+	Silent	SNP	C	T	T	rs1043447		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:16643489C>T	uc002nei.1	-	5	668	c.594G>A	c.(592-594)CGG>CGA	p.R198R	MED26_uc002nee.2_Intron|CHERP_uc002nej.2_Silent_p.R166R	NM_006387	NP_006378	Q8IWX8	CHERP_HUMAN	calcium homeostasis endoplasmic reticulum	198	CID.				cellular calcium ion homeostasis|negative regulation of cell proliferation|nervous system development|RNA processing	endoplasmic reticulum|perinuclear region of cytoplasm	RNA binding			ovary(2)	2						TGATGCGGTTCCGGAGGTGGC	0.627													25	34					0	0	0.002096	0	0
ZNF90	7643	broad.mit.edu	37	19	20215074	20215074	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:20215074C>T	uc002nor.2	+	2	169	c.30C>T	c.(28-30)GCC>GCT	p.A10A	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_Intron	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	10	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GAGATGTGGCCATAGAATTCT	0.418													28	42					0	0	0.003755	0	0
ZNF99	7652	broad.mit.edu	37	19	22940944	22940944	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:22940944C>T	uc010xrh.1	-	5	1494	c.1494G>A	c.(1492-1494)GGG>GGA	p.G498G		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				AGGGTTTCTCCCCAGTATGAA	0.358													13	10					0	0	0.003163	0	0
ZBTB32	27033	broad.mit.edu	37	19	36205566	36205566	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:36205566G>A	uc002oay.2	+	2	248	c.38G>A	c.(37-39)GGC>GAC	p.G13D	ZBTB32_uc002oaz.2_RNA	NM_014383	NP_055198	Q9Y2Y4	ZBT32_HUMAN	zinc finger and BTB domain containing 32	13					DNA repair|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleoplasm	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;2.22e-07)|Lung NSC(56;3.47e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			AGCCCCTATGGCTCTGATCGG	0.597													53	82					0	0	0.003610	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38673332	38673332	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:38673332G>A	uc002ohk.2	+	16	4891	c.4382G>A	c.(4381-4383)AGA>AAA	p.R1461K		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1461					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			GGGTGGAAGAGAACGGAGGAG	0.637													23	25					0	0	0.002299	0	0
PSG4	5672	broad.mit.edu	37	19	43708061	43708061	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:43708061C>T	uc002ovy.2	-	2	509	c.407G>A	c.(406-408)GGA>GAA	p.G136E	PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.G136E|PSG4_uc002ovz.2_Missense_Mutation_p.G136E	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	136	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GGTGAAATGTCCAGTTACTCC	0.522													75	106					0	0	0.003610	0	0
CBLC	23624	broad.mit.edu	37	19	45281419	45281419	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:45281419G>A	uc002ozs.2	+	1	294	c.231G>A	c.(229-231)GGG>GGA	p.G77G	CBLC_uc010ejt.2_Silent_p.G77G	NM_012116	NP_036248	Q9ULV8	CBLC_HUMAN	Cas-Br-M (murine) ecotropic retroviral	77	4H.|Cbl-PTB.				cell surface receptor linked signaling pathway|negative regulation of epidermal growth factor receptor activity|negative regulation of MAP kinase activity|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	calcium ion binding|epidermal growth factor receptor binding|phosphotyrosine binding|SH3 domain binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|skin(1)	6	Lung NSC(12;0.00136)|all_lung(12;0.00371)	Ovarian(192;0.231)				gcggcTCTGGGGACTTTCTAC	0.517			M		AML								69	74					0	0	0.003610	0	0
CCDC155	147872	broad.mit.edu	37	19	49912493	49912493	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:49912493G>A	uc002pnm.1	+	14	1273	c.1099G>A	c.(1099-1101)GAG>AAG	p.E367K	CCDC155_uc010emx.1_Missense_Mutation_p.E340K	NM_144688	NP_653289	Q8N6L0	CC155_HUMAN	coiled-coil domain containing 155	367						integral to membrane	calcium ion binding			ovary(1)|central_nervous_system(1)	2						GGGCTGGACCGAGCTGCTACC	0.617													12	25					0	0	0.003163	0	0
SIGLEC8	27181	broad.mit.edu	37	19	51958926	51958926	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:51958926C>T	uc002pwt.2	-	4	864	c.797G>A	c.(796-798)GGA>GAA	p.G266E	SIGLEC8_uc010yda.1_Missense_Mutation_p.G157E|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Missense_Mutation_p.G173E	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	266	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		TGAGCCATTTCCCAGGGCTGT	0.368													20	38					0	0	0.008871	0	0
DPRX	503834	broad.mit.edu	37	19	54137815	54137815	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:54137815G>A	uc002qcf.1	+	2	110	c.59G>A	c.(58-60)CGA>CAA	p.R20Q		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	20	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		CACAGGAAACGAACCATGTTC	0.433													40	60					0	0	0.002522	0	0
MIR1283-2	100302205	broad.mit.edu	37	19	54261542	54261542	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:54261542C>T	hsa-mir-1283-2|MI0006430	+			c.57C>T																				0						GAAAAGAAATCGCTTCCCTTT	0.433													28	38					0	0	0.006320	0	0
LILRB1	10859	broad.mit.edu	37	19	55144687	55144687	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:55144687G>A	uc002qgj.2	+	8	1519	c.1179G>A	c.(1177-1179)GGG>GGA	p.G393G	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.G393G|LILRB1_uc002qgk.2_Silent_p.G393G|LILRB1_uc002qgm.2_Silent_p.G393G|LILRB1_uc010erq.2_Silent_p.G393G|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	393	Ig-like C2-type 4.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCCATGCGGGGACCTACAGGT	0.592										HNSCC(37;0.09)			15	55					0	0	0.002096	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55351130	55351130	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:55351130G>A	uc002qhm.1	+	5	686	c.640G>A	c.(640-642)GAT>AAT	p.D214N	KIR2DS4_uc010yfj.1_Silent_p.V199V|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.V206V|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	214	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		AAACTCGAGTGATCCACTGCT	0.557													82	78					0	0	0.003610	0	0
NLRP4	147945	broad.mit.edu	37	19	56369277	56369277	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:56369277C>T	uc002qmd.3	+	3	940	c.518C>T	c.(517-519)TCG>TTG	p.S173L	NLRP4_uc002qmf.2_Missense_Mutation_p.S98L|NLRP4_uc010etf.2_Missense_Mutation_p.S4L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	173	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		ATGGCCTGGTCGGACAACAAG	0.498													53	62					0	0	0.003610	0	0
NLRP13	126204	broad.mit.edu	37	19	56443675	56443675	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:56443675C>T	uc010ygg.1	-	1	28	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	1	DAPIN.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CAGAAAAGTTCATCTTGCCCA	0.478													40	32					0	0	0.007835	0	0
PEG3	5178	broad.mit.edu	37	19	57327691	57327691	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:57327691G>A	uc002qnu.2	-	7	2470	c.2119C>T	c.(2119-2121)CAT>TAT	p.H707Y	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.H678Y|PEG3_uc002qnv.2_Missense_Mutation_p.H707Y|PEG3_uc002qnw.2_Missense_Mutation_p.H583Y|PEG3_uc002qnx.2_Missense_Mutation_p.H581Y|PEG3_uc010etr.2_Missense_Mutation_p.H707Y	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	707					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TTTCGAGAATGAATTTTCTGA	0.433													32	29					0	0	0.001786	0	0
ZNF552	79818	broad.mit.edu	37	19	58319499	58319499	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr19:58319499T>C	uc002qqg.2	-	3	1303	c.1133A>G	c.(1132-1134)AAG>AGG	p.K378R	ZNF587_uc002qqb.2_Intron|ZNF552_uc010yhg.1_Missense_Mutation_p.K374R	NM_024762	NP_079038	Q9H707	ZN552_HUMAN	zinc finger protein 552	378					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		CCCGTAAGGCTTTTCTCCAGT	0.433													3	87					0	0	0.000248	0	0
TPO	7173	broad.mit.edu	37	2	1481010	1481010	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:1481010G>A	uc002qww.2	+	8	1063	c.972G>A	c.(970-972)CTG>CTA	p.L324L	TPO_uc010ewj.2_Intron|TPO_uc002qwu.2_Silent_p.L324L|TPO_uc002qwr.2_Silent_p.L324L|TPO_uc002qwx.2_Silent_p.L324L|TPO_uc010yio.1_Intron|TPO_uc010yip.1_Silent_p.L324L	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	324	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CCTCGTTCCTGGACGCGTCCA	0.701													12	35					0	0	0.000978	0	0
RSAD2	91543	broad.mit.edu	37	2	7030342	7030342	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:7030342T>G	uc002qyp.1	+	4	910	c.774T>G	c.(772-774)TGT>TGG	p.C258W		NM_080657	NP_542388	Q8WXG1	RSAD2_HUMAN	radical S-adenosyl methionine domain containing	258					defense response to virus	endoplasmic reticulum membrane|Golgi apparatus	catalytic activity|iron-sulfur cluster binding|metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			OV - Ovarian serous cystadenocarcinoma(76;0.191)		GTGAGAATTGTGGAGAAGATG	0.448													19	67					0	0	0.007413	0	0
KIDINS220	57498	broad.mit.edu	37	2	8871371	8871371	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:8871371G>A	uc002qzc.2	-	30	4977	c.4795C>T	c.(4795-4797)CTG>TTG	p.L1599L	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Silent_p.L1500L|KIDINS220_uc002qzb.2_Silent_p.L453L	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1599	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TCATTGTGCAGAGAGTGATTG	0.468													21	43					0	0	0.001523	0	0
HPCAL1	3241	broad.mit.edu	37	2	10560075	10560075	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:10560075C>T	uc002raj.2	+	3	566	c.192C>T	c.(190-192)TTC>TTT	p.F64F	HPCAL1_uc002rak.2_Silent_p.F64F|HPCAL1_uc002ral.2_Silent_p.F64F|HPCAL1_uc010exe.2_RNA|HPCAL1_uc010exf.2_Silent_p.F64F	NM_002149	NP_002140	P37235	HPCL1_HUMAN	hippocalcin-like 1	64	EF-hand 2.						calcium ion binding			pancreas(1)	1	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.214)		CTTCCAAGTTCGCCGAGCACG	0.617													18	31					0	0	0.006122	0	0
NOL10	79954	broad.mit.edu	37	2	10717816	10717816	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:10717816C>T	uc002raq.2	-	20	2018	c.1893G>A	c.(1891-1893)TTG>TTA	p.L631L	NOL10_uc010yje.1_Silent_p.L605L|NOL10_uc010yjf.1_Silent_p.L581L|NOL10_uc002rap.2_Silent_p.L581L	NM_024894	NP_079170	Q9BSC4	NOL10_HUMAN	nucleolar protein 10	631						nucleolus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			Epithelial(75;0.172)|OV - Ovarian serous cystadenocarcinoma(76;0.207)		CGGATACACTCAATGTCCCAT	0.313													9	23					0	0	0.002450	0	0
OSR1	130497	broad.mit.edu	37	2	19553205	19553205	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:19553205T>C	uc002rdc.2	-	2	665	c.362A>G	c.(361-363)AAC>AGC	p.N121S		NM_145260	NP_660303	Q8TAX0	OSR1_HUMAN	odd-skipped related 1	121					chondrocyte differentiation|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic hindlimb morphogenesis|embryonic leg joint morphogenesis|embryonic skeletal joint morphogenesis|heart development|mesangial cell development|mesonephric duct morphogenesis|metanephric cap mesenchymal cell proliferation involved in metanephros development|metanephric glomerulus vasculature development|metanephric interstitial cell development|metanephric mesenchymal cell differentiation|metanephric nephron tubule development|metanephric smooth muscle tissue development|middle ear morphogenesis|negative regulation of apoptosis|negative regulation of nephron tubule epithelial cell differentiation|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|pattern specification involved in metanephros development|positive regulation of bone mineralization|positive regulation of epithelial cell proliferation|positive regulation of gastrulation|positive regulation of transcription from RNA polymerase II promoter|pronephros development|renal vesicle progenitor cell differentiation|specification of anterior mesonephric tubule identity|specification of posterior mesonephric tubule identity|stem cell differentiation|transcription, DNA-dependent|ureter urothelium development|ureteric bud development	nucleolus	nucleic acid binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.197)	Acute lymphoblastic leukemia(84;0.221)				CAAGGCCAGGTTGGCAAAATC	0.642													31	67					0	0	0.008361	0	0
MATN3	4148	broad.mit.edu	37	2	20205776	20205776	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:20205776G>A	uc002rdl.2	-	2	582	c.519C>T	c.(517-519)GCC>GCT	p.A173A	MATN3_uc010exu.1_Silent_p.A173A	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	173	VWFA.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCACTGTGAAGGCTTCGTCCA	0.567													17	46					0	0	0.001882	0	0
APOB	338	broad.mit.edu	37	2	21229477	21229477	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:21229477C>T	uc002red.2	-	26	10391	c.10263G>A	c.(10261-10263)ATG>ATA	p.M3421I		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3421	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CTGACACTTCCATATTTTTCG	0.393													253	594					0	0	0.003610	0	0
FOSL2	2355	broad.mit.edu	37	2	28635280	28635280	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:28635280G>A	uc002rma.2	+	4	1755	c.946G>A	c.(946-948)GAC>AAC	p.D316N	FOSL2_uc010ymi.1_Missense_Mutation_p.D277N	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	316					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					CCAATCATCAGACTCCTTGAA	0.632													17	28					0	0	0.006122	0	0
FAM179A	165186	broad.mit.edu	37	2	29225560	29225560	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:29225560G>A	uc010ezl.2	+	5	937	c.586G>A	c.(586-588)GAC>AAC	p.D196N	FAM179A_uc010ymm.1_Missense_Mutation_p.D196N	NM_199280	NP_954974	Q6ZUX3	F179A_HUMAN	hypothetical protein LOC165186	196							binding			ovary(3)|skin(1)	4						GAAGGGCCTGGACCTACCGGG	0.622													11	32					0	0	0.001368	0	0
PIGF	5281	broad.mit.edu	37	2	46842248	46842248	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:46842248G>A	uc002rvd.2	-	2	220	c.56C>T	c.(55-57)TCA>TTA	p.S19L	PIGF_uc002rvc.2_Missense_Mutation_p.S19L|CRIPT_uc002rve.2_5'Flank	NM_002643	NP_002634	Q07326	PIGF_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	19	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	ethanolaminephosphotransferase activity				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			TAGGATAATTGAAAATATGCA	0.348													29	70					0	0	0.002445	0	0
NRXN1	9378	broad.mit.edu	37	2	50723137	50723137	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:50723137C>T	uc010fbq.2	-	15	4573	c.3096G>A	c.(3094-3096)ATG>ATA	p.M1032I	NRXN1_uc002rxb.3_Missense_Mutation_p.M664I|NRXN1_uc002rxe.3_Missense_Mutation_p.M992I|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CCCTTGATATCATCACGTTGT	0.438													5	34					0	0	0.001984	0	0
SPTBN1	6711	broad.mit.edu	37	2	54873100	54873100	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:54873100C>T	uc002rxu.2	+	22	4779	c.4530C>T	c.(4528-4530)TCC>TCT	p.S1510S	SPTBN1_uc002rxx.2_Silent_p.S1497S	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1510	Spectrin 12.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			TGGCAACTTCCACGGATCATG	0.438													25	79					0	0	0.005443	0	0
KIAA1841	84542	broad.mit.edu	37	2	61298824	61298824	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:61298824G>A	uc002saw.3	+	4	537	c.234G>A	c.(232-234)GAG>GAA	p.E78E	KIAA1841_uc002sax.3_5'UTR|KIAA1841_uc002say.2_Silent_p.E78E|KIAA1841_uc002sav.3_Silent_p.E78E	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	78											0			Epithelial(17;0.193)			CTGCTGGAGAGAGTCCTGTTG	0.393													23	48					0	0	0.001882	0	0
EHBP1	23301	broad.mit.edu	37	2	63220725	63220725	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:63220725C>T	uc002sby.2	+	19	3489	c.3007C>T	c.(3007-3009)CCT>TCT	p.P1003S	EHBP1_uc010fcp.2_Missense_Mutation_p.P932S|EHBP1_uc002sbz.2_Missense_Mutation_p.P932S|EHBP1_uc002scb.2_Missense_Mutation_p.P968S	NM_015252	NP_056067	Q8NDI1	EHBP1_HUMAN	EH domain binding protein 1 isoform 1	1003						cytoplasm|membrane				ovary(1)|breast(1)	2	Lung NSC(7;0.0951)|all_lung(7;0.169)		LUSC - Lung squamous cell carcinoma(7;7.74e-05)|Epithelial(17;0.189)			TTTTAGAAATCCTGTTGTGTT	0.368									Hereditary_Prostate_Cancer				17	38					0	0	0.004990	0	0
ADD2	119	broad.mit.edu	37	2	70923506	70923506	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:70923506G>A	uc002sgz.2	-	5	810	c.345C>T	c.(343-345)ATC>ATT	p.I115I	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Silent_p.I115I|ADD2_uc002sha.2_Silent_p.I115I|ADD2_uc002sgx.2_Silent_p.I115I|ADD2_uc010fdt.1_Silent_p.I115I|ADD2_uc002shc.1_Silent_p.I115I|ADD2_uc002shd.1_Silent_p.I115I|ADD2_uc010fdu.1_Silent_p.I131I	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	115					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						GGAGGTCATTGATAGGCGTCA	0.572													14	29					0	0	0.004007	0	0
CCT7	10574	broad.mit.edu	37	2	73477004	73477004	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:73477004C>T	uc002siz.2	+	9	1132	c.1030C>T	c.(1030-1032)CGA>TGA	p.R344*	CCT7_uc002sja.2_Nonsense_Mutation_p.R140*|CCT7_uc010yrf.1_Nonsense_Mutation_p.R300*|CCT7_uc010feu.2_Nonsense_Mutation_p.R302*|CCT7_uc010yrg.1_Nonsense_Mutation_p.R244*|CCT7_uc010yrh.1_Nonsense_Mutation_p.R216*|CCT7_uc010yri.1_Nonsense_Mutation_p.R257*	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	344					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						TGTGCTGGGTCGATGCCAGGT	0.577													68	159					0	0	0.003610	0	0
ALMS1	7840	broad.mit.edu	37	2	73784428	73784428	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:73784428T>G	uc002sje.1	+	16	10274	c.10163T>G	c.(10162-10164)GTG>GGG	p.V3388G	ALMS1_uc002sjf.1_Missense_Mutation_p.V3344G|ALMS1_uc002sjg.2_Missense_Mutation_p.V2774G|ALMS1_uc002sjh.1_Missense_Mutation_p.V2774G|ALMS1_uc010fev.1_Missense_Mutation_p.V146G	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	3386					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACAAGGGCAGTGACTGAGGCT	0.423													36	61					0	0	0.004289	0	0
DOK1	1796	broad.mit.edu	37	2	74783057	74783058	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:74783057_74783058CC>TT	uc002sms.2	+	4	513_514	c.491_492CC>TT	c.(490-492)GCC>GTT	p.A164V	LOXL3_uc010ffm.1_5'Flank|LOXL3_uc002smp.1_5'Flank|LOXL3_uc002smq.1_5'Flank|LOXL3_uc010ffn.1_5'Flank|DOK1_uc002smr.2_Missense_Mutation_p.A25V|DOK1_uc010ffo.2_Missense_Mutation_p.A25V|DOK1_uc002smt.2_Intron|DOK1_uc002smu.2_Intron|DOK1_uc010yrz.1_Missense_Mutation_p.A153V|DOK1_uc002smv.2_Missense_Mutation_p.A25V|DOK1_uc002smw.1_5'UTR	NM_001381	NP_001372	Q99704	DOK1_HUMAN	docking protein 1	164	IRS-type PTB.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding				0						AGGACTGAGGCCGCCGAGCGCT	0.639													23	62					0	0	0.004672	0	0
C2orf3	6936	broad.mit.edu	37	2	75933673	75933673	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:75933673C>T	uc002sno.2	-	2	500	c.370G>A	c.(370-372)GGA>AGA	p.G124R	C2orf3_uc002snn.2_5'UTR|C2orf3_uc010fft.2_5'UTR|C2orf3_uc002snp.3_Missense_Mutation_p.G124R	NM_003203	NP_003194	P16383	GCF_HUMAN	hypothetical protein LOC6936	124					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						TCTTTTTCTCCAAGAGAGCTA	0.318													20	54					0	0	0.001882	0	0
RPIA	22934	broad.mit.edu	37	2	89049589	89049589	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:89049589C>T	uc002ste.2	+	9	971	c.930C>T	c.(928-930)TTC>TTT	p.F310F		NM_144563	NP_653164	P49247	RPIA_HUMAN	ribose 5-phosphate isomerase A	310					pentose-phosphate shunt, non-oxidative branch	cytosol	ribose-5-phosphate isomerase activity			ovary(1)	1		Acute lymphoblastic leukemia(2;0.000456)|all_hematologic(2;0.00287)				AGAAGCCTTTCTGTTGACCCT	0.532													17	49					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	2	89544367	89544367	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:89544367C>T	uc010ytr.1	-	14		c.1818G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GCCGCTGAATCTGTCTGGGAC	0.507													63	119					0	0	0.003610	0	0
PROM2	150696	broad.mit.edu	37	2	95952903	95952903	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:95952903C>T	uc002suh.1	+	19	2250	c.2117C>T	c.(2116-2118)GCC>GTC	p.A706V	PROM2_uc002sui.2_Missense_Mutation_p.A706V|PROM2_uc002suj.2_Missense_Mutation_p.A360V|PROM2_uc002suk.2_Missense_Mutation_p.A706V|PROM2_uc002sul.2_Missense_Mutation_p.A232V|PROM2_uc002sum.2_RNA	NM_144707	NP_653308	Q8N271	PROM2_HUMAN	prominin 2 precursor	706	Extracellular (Potential).					apical plasma membrane|basolateral plasma membrane|cilium membrane|integral to membrane|microvillus membrane				ovary(1)	1						GATGTCCTAGCCAATGTCACC	0.572													5	28					0	0	0.003080	0	0
MGAT4A	11320	broad.mit.edu	37	2	99294786	99294786	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:99294786A>C	uc002sze.2	-	3	557	c.243T>G	c.(241-243)GAT>GAG	p.D81E	MGAT4A_uc010fil.2_5'UTR	NM_012214	NP_036346	Q9UM21	MGT4A_HUMAN	alpha-1,3-mannosyl-glycoprotein	81	Lumenal (Potential).				N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	extracellular region|Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			skin(1)	1						TATTCAACGCATCCTTACTTC	0.259													20	59					0	0	0.001882	0	0
RNF149	284996	broad.mit.edu	37	2	101911607	101911607	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:101911607G>A	uc002taz.1	-	2	599	c.497C>T	c.(496-498)CCA>CTA	p.P166L	RNF149_uc002tax.1_RNA	NM_173647	NP_775918	Q8NC42	RN149_HUMAN	ring finger protein 149 precursor	166	PA.					integral to membrane	ligase activity|zinc ion binding			ovary(1)|breast(1)	2						TCTTCCTTTTGGATAGCTAAT	0.393													6	44					0	0	0.001984	0	0
RGPD3	653489	broad.mit.edu	37	2	107040948	107040948	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:107040948C>T	uc010ywi.1	-	20	3532	c.3475G>A	c.(3475-3477)GAA>AAA	p.E1159K		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1159	RanBD1 1.				intracellular transport		binding			ovary(1)	1						TGCTTGAATTCTTCAGCCAGC	0.438													64	117					0	0	0.003610	0	0
IL1F9	56300	broad.mit.edu	37	2	113742458	113742458	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:113742458G>A	uc002tio.1	+	5	411	c.342G>A	c.(340-342)GTG>GTA	p.V114V	IL1F9_uc010fkr.1_Silent_p.V79V	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	114					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						CCGAGCCCGTGAAACCCTTCC	0.512													59	137					0	0	0.003610	0	0
MARCO	8685	broad.mit.edu	37	2	119735507	119735508	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:119735507_119735508CC>TT	uc002tln.1	+	8	894_895	c.762_763CC>TT	c.(760-765)CTCCCA>CTTTCA	p.P255S	MARCO_uc010yyf.1_Missense_Mutation_p.P177S	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	255	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						ACCTGGGTCTCCCAGGTGAGGG	0.604													4	15					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	133070479	133070479	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:133070479C>T	uc002ttk.1	+	3		c.133C>T								Homo sapiens cDNA FLJ37280 fis, clone BRAMY2012881.																		GTTATCTTCACCAAGGAAGAG	0.408													14	88					0	0	0.002450	0	0
THSD7B	80731	broad.mit.edu	37	2	138033594	138033594	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:138033594G>A	uc002tva.1	+	11	2405	c.2405G>A	c.(2404-2406)AGA>AAA	p.R802K	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.R692K	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TTACAAACAAGAGGTATGATG	0.373													15	30					0	0	0.002450	0	0
NXPH2	11249	broad.mit.edu	37	2	139428990	139428990	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:139428990C>T	uc002tvi.2	-	2	297	c.297G>A	c.(295-297)CGG>CGA	p.R99R		NM_007226	NP_009157	O95156	NXPH2_HUMAN	neurexophilin 2 precursor	99	III.				neuropeptide signaling pathway	extracellular region				ovary(3)|skin(1)	4				BRCA - Breast invasive adenocarcinoma(221;0.101)		CTATTGGCCTCCGTTTAGTTC	0.458													26	73					0	0	0.003330	0	0
EPC2	26122	broad.mit.edu	37	2	149528411	149528412	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:149528411_149528412TT>AA	uc010zbt.1	+	9	1308_1309	c.1281_1282TT>AA	c.(1279-1284)GATTTG>GAAATG	p.427_428DL>EM		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	427_428					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		AATTGGCAGATTTGGATAAGTT	0.396													26	75					0	0	0.004672	0	0
SCN3A	6328	broad.mit.edu	37	2	166032796	166032796	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:166032796G>A	uc002ucx.2	-	3	601	c.109C>T	c.(109-111)CCC>TCC	p.P37S	SCN3A_uc002ucy.2_Missense_Mutation_p.P37S|SCN3A_uc002ucz.2_Missense_Mutation_p.P37S	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	37						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TCCTTTTTGGGCTTCTTGGCT	0.438													34	131					0	0	0.003755	0	0
SCN2A	6326	broad.mit.edu	37	2	166246326	166246326	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:166246326A>G	uc002udc.2	+	27	6300	c.6010A>G	c.(6010-6012)AAA>GAA	p.K2004E	SCN2A_uc002udd.2_Missense_Mutation_p.K2004E|SCN2A_uc002ude.2_Missense_Mutation_p.K2004E	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	2004					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CAGGGAAAGTAAAAAGTAAAA	0.378													10	18					0	0	0.006214	0	0
SCN1A	6323	broad.mit.edu	37	2	166903433	166903433	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:166903433G>A	uc010zcz.1	-	9	1242	c.1224C>T	c.(1222-1224)TTC>TTT	p.F408F	SCN1A_uc002udo.3_Silent_p.F277F|SCN1A_uc010fpk.2_Silent_p.F277F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	408	Helical; Name=S6 of repeat I; (By similarity).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	ATGAGCCCAAGAAAATGACCA	0.393													30	53					0	0	0.002445	0	0
SCN7A	6332	broad.mit.edu	37	2	167328849	167328849	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:167328849C>T	uc002udu.1	-	5	677	c.550G>A	c.(550-552)GAT>AAT	p.D184N	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	184	Helical; Name=S3 of repeat I; (By similarity).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						ACGCTGAAATCGAGCCAGTTC	0.353													10	14					0	0	0.000978	0	0
ABCB11	8647	broad.mit.edu	37	2	169787195	169787195	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:169787195C>T	uc002ueo.1	-	25	3517	c.3391G>A	c.(3391-3393)GAT>AAT	p.D1131N	ABCB11_uc010zda.1_Missense_Mutation_p.D573N|ABCB11_uc010zdb.1_Missense_Mutation_p.D607N	NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	1131	Cytoplasmic (Potential).|ABC transporter 2.				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	TGATCAGGATCATAGAAACGT	0.473													9	26					0	0	0.006214	0	0
HOXD4	3233	broad.mit.edu	37	2	177017469	177017469	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:177017469C>A	uc002uks.2	+	2	816	c.567C>A	c.(565-567)CAC>CAA	p.H189Q		NM_014621	NP_055436	P09016	HXD4_HUMAN	homeobox D4	189	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00765)|Epithelial(96;0.105)	Colorectal(32;0.0224)|READ - Rectum adenocarcinoma(9;0.0556)		AAATCGCTCACACCCTGTGTC	0.502													21	48					2.4624e-09	3.29873e-09	0.008871	1	0
PDE11A	50940	broad.mit.edu	37	2	178936809	178936809	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:178936809T>A	uc002ulq.2	-	1	674	c.356A>T	c.(355-357)AAA>ATA	p.K119I	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	119					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CCTTAGCTCTTTCTGAGAAGC	0.622									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				29	63					0	0	0.002096	0	0
TTN	7273	broad.mit.edu	37	2	179410659	179410659	+	Silent	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:179410659G>T	uc010zfg.1	-	292	87824	c.87600C>A	c.(87598-87600)GTC>GTA	p.V29200V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V22895V|TTN_uc010zfi.1_Silent_p.V22828V|TTN_uc010zfj.1_Silent_p.V22703V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30127							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCTGGTAACGACATAGGATA	0.488													26	64					1.85244e-09	2.48438e-09	0.003330	1	0
TTN	7273	broad.mit.edu	37	2	179417166	179417166	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:179417166G>A	uc010zfg.1	-	284	82981	c.82757C>T	c.(82756-82758)CCT>CTT	p.P27586L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P21281L|TTN_uc010zfi.1_Missense_Mutation_p.P21214L|TTN_uc010zfj.1_Missense_Mutation_p.P21089L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28513							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCCTTATAAGGTAATTCAAG	0.403													19	28					0	0	0.008871	0	0
TTN	7273	broad.mit.edu	37	2	179606124	179606124	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:179606124G>A	uc010zfh.1	-	46	11547	c.11323C>T	c.(11323-11325)CCA>TCA	p.P3775S	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.P3708S|TTN_uc010zfj.1_Missense_Mutation_p.P3583S|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGCGAATTGGTTTTAACTCC	0.478													60	182					0	0	0.003610	0	0
NEUROD1	4760	broad.mit.edu	37	2	182542604	182542604	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:182542604G>A	uc002uof.2	-	2	1220	c.984C>T	c.(982-984)ATC>ATT	p.I328I	CERKL_uc002uod.1_Intron	NM_002500	NP_002491	Q13562	NDF1_HUMAN	neurogenic differentiation 1	328					amacrine cell differentiation|cerebellum development|dentate gyrus development|embryonic organ morphogenesis|enteroendocrine cell differentiation|glucose homeostasis|inner ear development|insulin secretion|negative regulation of apoptosis|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of neuron differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of cell cycle arrest|regulation of intestinal epithelial structure maintenance|response to glucose stimulus	cytoplasm|nucleus	chromatin binding|E-box binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TGTCTATGGGGATCTCGCAGC	0.507													176	432					0	0	0.003610	0	0
SLC40A1	30061	broad.mit.edu	37	2	190444572	190444572	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:190444572G>A	uc002uqp.3	-	2	429	c.78C>T	c.(76-78)TTC>TTT	p.F26F	SLC40A1_uc002uqr.1_RNA|SLC40A1_uc002uqs.1_RNA|SLC40A1_uc002uqq.2_Silent_p.F26F|SLC40A1_uc010zfx.1_RNA	NM_014585	NP_055400	Q9NP59	S40A1_HUMAN	solute carrier family 40 (iron-regulated	26	Helical; (Potential).				anatomical structure morphogenesis|cellular iron ion homeostasis	cytoplasm|integral to plasma membrane	iron ion transmembrane transporter activity|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000917)|Epithelial(96;0.014)|all cancers(119;0.0491)			GGTAGAGAAGGAATTTTGCAG	0.458													20	41					0	0	0.001882	0	0
PMS1	5378	broad.mit.edu	37	2	190719571	190719571	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:190719571C>T	uc002urh.3	+	9	2102	c.1573C>T	c.(1573-1575)CCA>TCA	p.P525S	PMS1_uc010zga.1_Missense_Mutation_p.P486S|PMS1_uc010zgb.1_Missense_Mutation_p.P464S|PMS1_uc002urk.3_Missense_Mutation_p.P486S|PMS1_uc002uri.3_Missense_Mutation_p.P525S|PMS1_uc010zgc.1_Missense_Mutation_p.P349S|PMS1_uc010zgd.1_Missense_Mutation_p.P349S|PMS1_uc002urj.2_RNA|PMS1_uc010fry.1_Missense_Mutation_p.P486S|PMS1_uc010frz.2_Intron|PMS1_uc002url.2_Missense_Mutation_p.P310S|PMS1_uc002urm.2_RNA|PMS1_uc002urn.1_Missense_Mutation_p.P193S	NM_000534	NP_000525	P54277	PMS1_HUMAN	postmeiotic segregation 1 isoform a	525					mismatch repair|reciprocal meiotic recombination	MutLalpha complex	ATP binding|ATPase activity|mismatched DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0013)|Epithelial(96;0.0263)|all cancers(119;0.0751)			AAAAAGTTTACCATGTAAAGT	0.299			Mis|N			colorectal|endometrial|ovarian		Direct_reversal_of_damage|MMR					14	47					0	0	0.006122	0	0
DNAH7	56171	broad.mit.edu	37	2	196913019	196913020	+	Splice_Site	DNP	CC	TA	TA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:196913019_196913020CC>TA	uc002utj.3	-	4	351	c.250_splice	c.e4+1	p.A84_splice		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7						ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GAAGTTCTTACCATGGGACTGT	0.361													17	58					0	0	0.004672	0	0
PGAP1	80055	broad.mit.edu	37	2	197777762	197777762	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:197777762G>A	uc002utw.2	-	4	607	c.493C>T	c.(493-495)CCA>TCA	p.P165S	PGAP1_uc002utx.2_5'UTR|PGAP1_uc002uty.1_Missense_Mutation_p.P165S|PGAP1_uc010zgv.1_RNA|PGAP1_uc010fsj.2_5'UTR	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	165	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						ACACTTTTTGGAGCAAATTCT	0.323													17	35					0	0	0.007413	0	0
AOX1	316	broad.mit.edu	37	2	201467038	201467038	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:201467038C>T	uc002uvx.2	+	6	569	c.468C>T	c.(466-468)CCC>CCT	p.P156P		NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	156					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GATACAGGCCCATAATTGATG	0.453													45	117					0	0	0.003610	0	0
ALS2CR8	79800	broad.mit.edu	37	2	203839116	203839116	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:203839116C>T	uc002uzo.2	+	12	1671	c.1391C>T	c.(1390-1392)TCT>TTT	p.S464F	ALS2CR8_uc010ftu.1_RNA|ALS2CR8_uc010zia.1_Missense_Mutation_p.S388F|ALS2CR8_uc010zib.1_Missense_Mutation_p.S388F|ALS2CR8_uc010zic.1_Missense_Mutation_p.S376F|ALS2CR8_uc002uzp.2_Missense_Mutation_p.S464F	NM_001104586	NP_001098056	Q8N187	AL2S8_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	464										large_intestine(1)|ovary(1)	2						CATAATTTATCTTTTTTTCCA	0.318													91	267					0	0	0.003610	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173765	207173765	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:207173765C>T	uc002vbp.2	+	5	4763	c.4513C>T	c.(4513-4515)CCT>TCT	p.P1505S		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1505							nucleic acid binding|zinc ion binding			ovary(3)	3						TTCTGATGTTCCTTTTCAAAT	0.413													16	48					0	0	0.004990	0	0
SPAG16	79582	broad.mit.edu	37	2	214794732	214794732	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:214794732G>A	uc002veq.2	+	12	1355	c.1263G>A	c.(1261-1263)TGG>TGA	p.W421*	SPAG16_uc010fuz.1_Nonsense_Mutation_p.W272*|SPAG16_uc002ver.2_Nonsense_Mutation_p.W367*|SPAG16_uc010zjk.1_Nonsense_Mutation_p.W327*	NM_024532	NP_078808	Q8N0X2	SPG16_HUMAN	sperm associated antigen 16 isoform 1	421	WD 2.				cilium assembly	cilium axoneme|flagellar axoneme				ovary(1)|skin(1)	2		Renal(323;0.00461)		UCEC - Uterine corpus endometrioid carcinoma (47;0.0525)|Epithelial(149;7.07e-07)|all cancers(144;7.96e-05)|Lung(261;0.00255)|LUSC - Lung squamous cell carcinoma(224;0.00599)		TTAAATTATGGGATCTATGTA	0.413													21	75					0	0	0.003330	0	0
OBSL1	23363	broad.mit.edu	37	2	220432081	220432081	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:220432081G>A	uc010fwk.2	-	4	1808	c.1751C>T	c.(1750-1752)TCC>TTC	p.S584F	OBSL1_uc010fwl.1_Missense_Mutation_p.S59F|OBSL1_uc002vmi.2_Missense_Mutation_p.S584F|OBSL1_uc002vmj.2_Missense_Mutation_p.S171F	NM_015311	NP_056126	O75147	OBSL1_HUMAN	obscurin-like 1	584	Fibronectin type-III.				cardiac myofibril assembly	intercalated disc|M band|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity				0		Renal(207;0.0376)		Epithelial(149;2.02e-07)|all cancers(144;1.68e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00834)		GTCACCCTCGGAGGGCACACA	0.622													8	21					0	0	0.004482	0	0
EPHA4	2043	broad.mit.edu	37	2	222294835	222294835	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:222294835G>A	uc002vmq.2	-	15	2575	c.2533C>T	c.(2533-2535)CCT>TCT	p.P845S	EPHA4_uc002vmr.2_Missense_Mutation_p.P845S|EPHA4_uc010zlm.1_Missense_Mutation_p.P786S|EPHA4_uc010zln.1_Missense_Mutation_p.P845S	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	845	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		TCCATTGGAGGGGGTAACCGA	0.512													24	92					0	0	0.003954	0	0
FAM124B	79843	broad.mit.edu	37	2	225266236	225266236	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:225266236G>A	uc002vnx.2	-	1	476	c.250C>T	c.(250-252)CGC>TGC	p.R84C	FAM124B_uc002vnw.2_Missense_Mutation_p.R84C	NM_001122779	NP_001116251	Q9H5Z6	F124B_HUMAN	hypothetical protein LOC79843 isoform a	84							protein binding			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0126)|Lung NSC(271;0.0161)|all_hematologic(139;0.138)		Epithelial(121;4.4e-10)|all cancers(144;2.02e-07)|Lung(261;0.00766)|LUSC - Lung squamous cell carcinoma(224;0.00825)		TCCAGGACGCGAAATAGCCTA	0.547													16	40					0	0	0.004007	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881884	228881884	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:228881884C>T	uc002vpq.2	-	7	3733	c.3686G>A	c.(3685-3687)CGA>CAA	p.R1229Q	SPHKAP_uc002vpp.2_Missense_Mutation_p.R1229Q|SPHKAP_uc010zlx.1_Missense_Mutation_p.R1229Q	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1229						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CACTGGGGATCGCAGAGAAGG	0.567													33	71					0	0	0.002096	0	0
B3GNT7	93010	broad.mit.edu	37	2	232262827	232262827	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:232262827G>A	uc002vrs.2	+	2	577	c.397G>A	c.(397-399)GAT>AAT	p.D133N		NM_145236	NP_660279	Q8NFL0	B3GN7_HUMAN	UDP-GlcNAc:betaGal	133	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity				0		Renal(207;0.025)|all_hematologic(139;0.094)|Acute lymphoblastic leukemia(138;0.164)|Medulloblastoma(418;0.232)		Epithelial(121;3.22e-11)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(119;0.0139)		GTGCAGGGGCGATGTCTACCT	0.662													13	31					0	0	0.001368	0	0
ECEL1	9427	broad.mit.edu	37	2	233344935	233344935	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:233344935C>T	uc002vsv.2	-	18	2461	c.2256G>A	c.(2254-2256)GAG>GAA	p.E752E	ECEL1_uc010fya.1_Silent_p.E750E|ECEL1_uc010fyb.1_Silent_p.E459E	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	752	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GGCCAAACTCCTCAAACTGGG	0.642													10	54					0	0	0.008291	0	0
COL6A3	1293	broad.mit.edu	37	2	238275613	238275613	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:238275613C>T	uc002vwl.2	-	11	5502	c.5217G>A	c.(5215-5217)CTG>CTA	p.L1739L	COL6A3_uc002vwo.2_Silent_p.L1533L|COL6A3_uc010znj.1_Silent_p.L1132L	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1739	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCCGCTGGTCCAGGCGGCTGC	0.587													21	38					0	0	0.002780	0	0
HDAC4	9759	broad.mit.edu	37	2	240024505	240024505	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:240024505T>A	uc002vyk.3	-	16	2977	c.2185A>T	c.(2185-2187)AAC>TAC	p.N729Y	HDAC4_uc010fyz.1_Missense_Mutation_p.N724Y|HDAC4_uc010zoa.1_Missense_Mutation_p.N729Y|HDAC4_uc010fza.2_Missense_Mutation_p.N734Y|HDAC4_uc010fyy.2_Missense_Mutation_p.N686Y|HDAC4_uc010znz.1_Missense_Mutation_p.N612Y	NM_006037	NP_006028	P56524	HDAC4_HUMAN	histone deacetylase 4	729	Histone deacetylase.				B cell differentiation|cardiac muscle hypertrophy in response to stress|chromatin remodeling|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of glycolysis|negative regulation of myotube differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development|peptidyl-lysine deacetylation|positive regulation of cell proliferation|positive regulation of protein sumoylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|response to denervation involved in regulation of muscle adaptation|response to interleukin-1|transcription, DNA-dependent	histone deacetylase complex|transcriptional repressor complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|potassium ion binding|repressing transcription factor binding|zinc ion binding			breast(3)|skin(2)|ovary(1)	6		all_epithelial(40;1.45e-17)|Breast(86;1.53e-05)|Renal(207;0.000355)|all_lung(227;0.0121)|Ovarian(221;0.0183)|Lung NSC(271;0.0413)|Melanoma(123;0.0749)|all_hematologic(139;0.159)		Epithelial(121;6.38e-25)|OV - Ovarian serous cystadenocarcinoma(60;2.48e-12)|Kidney(56;6.04e-08)|KIRC - Kidney renal clear cell carcinoma(57;1.18e-06)|BRCA - Breast invasive adenocarcinoma(100;3.99e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.04)		TTCTGCCGGTTGAGGGGGTTC	0.562													26	55					0	0	0.003330	0	0
ANKMY1	51281	broad.mit.edu	37	2	241463384	241463384	+	Silent	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr2:241463384A>G	uc002vyz.1	-	7	1712	c.1483T>C	c.(1483-1485)TTG>CTG	p.L495L	ANKMY1_uc002vza.1_Silent_p.L354L|ANKMY1_uc010fzd.1_Silent_p.L584L|ANKMY1_uc002vzb.1_Silent_p.L256L|ANKMY1_uc002vzc.1_Silent_p.L354L|ANKMY1_uc002vzd.1_Silent_p.L354L|ANKMY1_uc010fze.1_Silent_p.L164L|ANKMY1_uc002vze.2_Silent_p.L256L	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	495							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		ATCTTCAGCAAGCTGTGGGAC	0.597													33	53					0	0	0.002445	0	0
DEFB125	245938	broad.mit.edu	37	20	76674	76674	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:76674G>A	uc002wcw.2	+	2	87	c.87G>A	c.(85-87)AAG>AAA	p.K29K		NM_153325	NP_697020	Q8N687	DB125_HUMAN	defensin, beta 125 preproprotein	29					defense response to bacterium	extracellular region				ovary(1)|central_nervous_system(1)|skin(1)	3		all_cancers(10;7.65e-05)|Lung NSC(37;0.0417)|all_epithelial(17;0.0676)|all_lung(30;0.0713)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.156)			AATGTTGGAAGAATAATGTAG	0.323													52	95					0	0	0.003610	0	0
SIRPB1	10326	broad.mit.edu	37	20	1551693	1551693	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:1551693C>T	uc010gai.2	-	4	941	c.842G>A	c.(841-843)GGA>GAA	p.G281E	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	281	Ig-like C1-type 2.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						CAGCTGTAGTCCCCGGGGGTA	0.542													19	57					0	0	0.007413	0	0
RASSF2	9770	broad.mit.edu	37	20	4776474	4776475	+	Silent	DNP	GG	AA	AA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:4776474_4776475GG>AA	uc002wld.2	-	4	327_328	c.273_274CC>TT	c.(271-276)AACCTG>AATTTG	p.91_92NL>NL	RASSF2_uc002wlc.2_5'Flank|RASSF2_uc002wle.2_RNA|RASSF2_uc002wlf.2_Silent_p.91_92NL>NL	NM_170774	NP_739580	P50749	RASF2_HUMAN	Ras association domain family 2	91_92					cell cycle|signal transduction	nucleus	protein binding			ovary(3)|lung(2)|large_intestine(1)	6						TGAGCCCCCAGGTTACAGCCAG	0.594													43	104					0	0	0.004672	0	0
PAK7	57144	broad.mit.edu	37	20	9546826	9546826	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:9546826G>A	uc002wnl.2	-	6	1741	c.1196C>T	c.(1195-1197)TCC>TTC	p.S399F	PAK7_uc002wnk.2_Missense_Mutation_p.S399F|PAK7_uc002wnj.2_Missense_Mutation_p.S399F|PAK7_uc010gby.1_Missense_Mutation_p.S399F	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	399	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GCTCAGGTAGGAAGCCGTGGA	0.602													35	90					0	0	0.002836	0	0
RRBP1	6238	broad.mit.edu	37	20	17640802	17640802	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:17640802G>A	uc010zrq.1	-	3	705	c.351C>T	c.(349-351)ATC>ATT	p.I117I	RRBP1_uc002wpu.2_5'Flank|RRBP1_uc002wpv.1_Silent_p.I117I|RRBP1_uc002wpw.1_Silent_p.I117I|RRBP1_uc010gcl.1_Intron|RRBP1_uc010zrr.1_Silent_p.I117I			Q9P2E9	RRBP1_HUMAN	SubName: Full=RRBP1 protein; Flags: Fragment;	117	Cytoplasmic (Potential).				protein transport|translation|transmembrane transport	integral to endoplasmic reticulum membrane|ribosome	receptor activity			ovary(1)	1						CAGGAGCAACGATAATGGGGG	0.572													13	37					0	0	0.003163	0	0
OVOL2	58495	broad.mit.edu	37	20	18022217	18022217	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:18022217C>T	uc002wqi.1	-	3	715	c.472G>A	c.(472-474)GAC>AAC	p.D158N		NM_021220	NP_067043	Q9BRP0	OVOL2_HUMAN	zinc finger protein 339	158	C2H2-type 2.				negative regulation of keratinocyte differentiation|negative regulation of Notch signaling pathway|negative regulation of transcription by competitive promoter binding|regulation of cell cycle|regulation of keratinocyte proliferation|transcription, DNA-dependent	nucleus	DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)	1						TCGAAGGTGTCGTTGAAGCCC	0.562													15	41					0	0	0.003163	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18142625	18142625	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:18142625C>T	uc002wqj.2	+	6	1466	c.844C>T	c.(844-846)CTT>TTT	p.L282F	CSRP2BP_uc002wqk.2_Missense_Mutation_p.L154F|CSRP2BP_uc010zru.1_Missense_Mutation_p.L153F	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	282					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						CGCTGGCTTTCTTGACAGGAG	0.473													53	145					0	0	0.003610	0	0
SLC24A3	57419	broad.mit.edu	37	20	19698204	19698204	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:19698204C>T	uc002wrl.2	+	16	1949	c.1752C>T	c.(1750-1752)TCC>TCT	p.S584S		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	584	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						TGATCTACTCCGTAGGCTTGC	0.507													103	265					0	0	0.003610	0	0
PLAGL2	5326	broad.mit.edu	37	20	30784638	30784638	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:30784638G>A	uc002wxn.2	-	3	1325	c.1108C>T	c.(1108-1110)CTG>TTG	p.L370L		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	370						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			GAGAGAGACAGGCTTCCAGGA	0.587													24	73					0	0	0.002780	0	0
PLAGL2	5326	broad.mit.edu	37	20	30789889	30789889	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:30789889G>A	uc002wxn.2	-	2	310	c.93C>T	c.(91-93)GGC>GGT	p.G31G		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	31						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CCGCCTCCCGGCCCCGAGGCC	0.572													23	65					0	0	0.003954	0	0
SUN5	140732	broad.mit.edu	37	20	31583446	31583446	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:31583446C>T	uc002wyi.2	-	8	606	c.513G>A	c.(511-513)GAG>GAA	p.E171E		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	171	Potential.				spermatogenesis					skin(1)	1						TGGCTTCCATCTCCTGGAGCT	0.418													98	180					0	0	0.003610	0	0
RBL1	5933	broad.mit.edu	37	20	35663762	35663762	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:35663762G>A	uc002xgi.2	-	15	2132	c.2053C>T	c.(2053-2055)CCT>TCT	p.P685S	RBL1_uc010zvt.1_RNA|RBL1_uc002xgj.1_Missense_Mutation_p.P685S	NM_002895	NP_002886	P28749	RBL1_HUMAN	retinoblastoma-like protein 1 isoform a	685	Pocket; binds T and E1A.|Spacer.				cell cycle|chromatin modification|interspecies interaction between organisms|regulation of cell cycle|regulation of lipid kinase activity|transcription, DNA-dependent		transcription factor binding			lung(5)|skin(3)|ovary(2)	10		Myeloproliferative disorder(115;0.00878)				CTTGAAGAAGGAGCGATTTTC	0.423													23	60					0	0	0.004656	0	0
WISP2	8839	broad.mit.edu	37	20	43353579	43353579	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:43353579G>A	uc002xmn.2	+	4	831	c.478G>A	c.(478-480)GAG>AAG	p.E160K	uc002xml.1_Intron|uc002xmm.1_Intron|WISP2_uc002xmp.2_Missense_Mutation_p.E160K|WISP2_uc002xmq.2_Intron	NM_003881	NP_003872	O76076	WISP2_HUMAN	WNT1 inducible signaling pathway protein 2	160	VWFC.				cell adhesion|cell-cell signaling|signal transduction	extracellular region|soluble fraction	insulin-like growth factor binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				GTGCTGCCCTGAGTGGGTGTG	0.716													8	21					0	0	0.000978	0	0
ELMO2	63916	broad.mit.edu	37	20	45017681	45017681	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:45017681G>A	uc002xrt.1	-	7	632	c.422C>T	c.(421-423)TCC>TTC	p.S141F	ELMO2_uc002xru.1_Missense_Mutation_p.S141F|ELMO2_uc010zxr.1_Missense_Mutation_p.S141F|ELMO2_uc010zxs.1_5'UTR|ELMO2_uc002xrw.2_5'Flank|ELMO2_uc002xrx.1_Missense_Mutation_p.S141F	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	141					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TACTCACTGGGACAAGAGCTT	0.483													25	64					0	0	0.004656	0	0
EYA2	2139	broad.mit.edu	37	20	45700823	45700823	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:45700823G>A	uc002xsm.2	+	6	790	c.416_splice	c.e6-1	p.G139_splice	EYA2_uc010ghp.2_Splice_Site_p.G139_splice|EYA2_uc002xsn.2_Splice_Site_p.G144_splice|EYA2_uc002xso.2_Splice_Site_p.G139_splice|EYA2_uc002xsp.2_Splice_Site_p.G139_splice|EYA2_uc002xsq.2_Splice_Site_p.G139_splice	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a						DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				CCTTCCCACAGGCACAACAGG	0.502													20	20					0	0	0.008871	0	0
NFATC2	4773	broad.mit.edu	37	20	50140306	50140306	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:50140306G>A	uc002xwd.2	-	2	694	c.474C>T	c.(472-474)TTC>TTT	p.F158F	NFATC2_uc002xwc.2_Silent_p.F158F|NFATC2_uc010zyv.1_Intron|NFATC2_uc010zyw.1_Intron|NFATC2_uc010zyx.1_Silent_p.F138F|NFATC2_uc010zyy.1_Intron|NFATC2_uc010zyz.1_Intron|NFATC2_uc002xwe.2_Silent_p.F138F	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	158	Trans-activation domain A (TAD-A).				B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					GGTAGCCCTCGAAGCCGGGCA	0.706													6	17					0	0	0.001168	0	0
APCDD1L	164284	broad.mit.edu	37	20	57042501	57042501	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:57042501G>A	uc002xze.1	-	3	588	c.402C>T	c.(400-402)ATC>ATT	p.I134I	APCDD1L_uc010zzp.1_Silent_p.I145I	NM_153360	NP_699191	Q8NCL9	APCDL_HUMAN	adenomatosis polyposis coli down-regulated	134						integral to membrane				ovary(1)	1	Lung NSC(12;0.000856)|all_lung(29;0.0025)		BRCA - Breast invasive adenocarcinoma(13;5.6e-11)|Epithelial(14;1.67e-07)|all cancers(14;1.48e-06)			TGTGGAAGACGATGCCCACCT	0.751													4	17					0	0	0.000248	0	0
GNAS	2778	broad.mit.edu	37	20	57429248	57429248	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:57429248G>A	uc002xzw.2	+	1	1213	c.928G>A	c.(928-930)GAG>AAG	p.E310K	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			ACCCCCGTTCGAGATTGGCAG	0.672			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			12	27					0	0	0.003163	0	0
EEF1A2	1917	broad.mit.edu	37	20	62120406	62120406	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:62120406C>T	uc002yfd.1	-	6	1230	c.1129G>A	c.(1129-1131)GAG>AAG	p.E377K	EEF1A2_uc002yfe.1_Missense_Mutation_p.E377K|EEF1A2_uc010gkg.1_Intron	NM_001958	NP_001949	Q05639	EF1A2_HUMAN	eukaryotic translation elongation factor 1 alpha	377						nucleus	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0	all_cancers(38;9.45e-12)		BRCA - Breast invasive adenocarcinoma(10;1.22e-05)			TCAATCTTCTCCTTCAGCTCC	0.612													29	52					0	0	0.005443	0	0
OPRL1	4987	broad.mit.edu	37	20	62729389	62729389	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:62729389C>T	uc002yic.2	+	4	870	c.468C>T	c.(466-468)ATC>ATT	p.I156I	OPRL1_uc002yid.2_Silent_p.I156I|OPRL1_uc002yif.3_Silent_p.I151I	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	156	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					GCCACCCCATCCGTGCCCTCG	0.572													40	98					0	0	0.008740	0	0
MYT1	4661	broad.mit.edu	37	20	62842672	62842672	+	Nonsense_Mutation	SNP	A	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr20:62842672A>T	uc002yii.2	+	8	1769	c.1405A>T	c.(1405-1407)AAG>TAG	p.K469*	MYT1_uc002yih.2_Nonsense_Mutation_p.K171*|MYT1_uc002yij.2_Nonsense_Mutation_p.K101*	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	469					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CTGTCCCCACAAGGATAGGAT	0.572													20	48					0	0	0.002780	0	0
TPTE	7179	broad.mit.edu	37	21	10906979	10906979	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:10906979G>A	uc002yip.1	-	24	1950	c.1582C>T	c.(1582-1584)CCA>TCA	p.P528S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P510S|TPTE_uc002yir.1_Missense_Mutation_p.P490S|TPTE_uc010gkv.1_Missense_Mutation_p.P390S	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	528	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AAATCTGATGGATAAATTCTC	0.368													7	44					0	0	0.003080	0	0
TPTE	7179	broad.mit.edu	37	21	10998312	10998312	+	RNA	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:10998312C>T	uc002yis.1	-	11		c.1941G>A						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TCTGATTTTCCATCACAATCC	0.363													11	102					0	0	0.001368	0	0
C21orf99	149992	broad.mit.edu	37	21	14414855	14414855	+	RNA	SNP	A	G	G	rs141732548	by1000genomes	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:14414855A>G	uc002yiy.3	+	2		c.292A>G			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						GCCAATGGCCATGCAGAAGTA	0.448													6	49					0	0	0.004482	0	0
LIPI	149998	broad.mit.edu	37	21	15561360	15561360	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:15561360G>A	uc002yjm.2	-	2	500	c.490C>T	c.(490-492)CTT>TTT	p.L164F	LIPI_uc010gkw.1_Missense_Mutation_p.L97F	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	143					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		CTTACCAAAAGATTTTTAATG	0.333													13	48					0	0	0.002450	0	0
RBM11	54033	broad.mit.edu	37	21	15592040	15592040	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:15592040C>T	uc002yjo.3	+	2	295	c.253C>T	c.(253-255)CGA>TGA	p.R85*	RBM11_uc002yjn.3_5'UTR|RBM11_uc002yjp.3_Intron	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11	85	RRM.						nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		CGTGCAGTATCGATTTGGTAG	0.373													9	23					0	0	0.008291	0	0
CXADR	1525	broad.mit.edu	37	21	18933732	18933732	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:18933732C>T	uc002yki.2	+	6	889	c.771C>T	c.(769-771)ATC>ATT	p.I257I	CXADR_uc002ykh.1_Intron|CXADR_uc010gld.1_Intron|CXADR_uc010gle.1_Intron|CXADR_uc002ykj.1_Silent_p.I230I	NM_001338	NP_001329	P78310	CXAR_HUMAN	coxsackie virus and adenovirus receptor	257	Helical; (Potential).				blood coagulation|cell adhesion|interspecies interaction between organisms|leukocyte migration|regulation of immune response	adherens junction|basolateral plasma membrane|extracellular region|integral to plasma membrane|nucleus|tight junction	receptor activity			ovary(1)	1				Epithelial(23;0.000206)|all cancers(11;0.000302)|OV - Ovarian serous cystadenocarcinoma(11;0.0194)|Lung(58;0.0233)|COAD - Colon adenocarcinoma(22;0.0389)|Colorectal(24;0.0483)|LUSC - Lung squamous cell carcinoma(23;0.0782)		GTCTTATCATCTTTTGCTGTC	0.358													10	23					0	0	0.008291	0	0
USP16	10600	broad.mit.edu	37	21	30414797	30414797	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:30414797C>T	uc002ymy.2	+	12	1329	c.1127C>T	c.(1126-1128)TCC>TTC	p.S376F	USP16_uc002ymx.2_Missense_Mutation_p.S375F|USP16_uc002ymw.2_Missense_Mutation_p.S376F|USP16_uc011acm.1_Missense_Mutation_p.S361F|USP16_uc011acn.1_Intron|USP16_uc011aco.1_Missense_Mutation_p.S66F	NM_006447	NP_006438	Q9Y5T5	UBP16_HUMAN	ubiquitin specific protease 16 isoform a	376					cell division|histone deubiquitination|mitosis|positive regulation of transcription, DNA-dependent|protein homotetramerization|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	cysteine-type endopeptidase activity|histone binding|transcription coactivator activity|ubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			ovary(2)|breast(1)|pancreas(1)	4						GTTAAGGTCTCCTTGGTTCAT	0.368													15	60					0	0	0.004007	0	0
GART	2618	broad.mit.edu	37	21	34897290	34897290	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:34897290C>T	uc002yrx.2	-	11	1219	c.1084G>A	c.(1084-1086)GCT>ACT	p.A362T	GART_uc002yrz.2_Missense_Mutation_p.A362T|GART_uc010gmd.2_Missense_Mutation_p.A24T|GART_uc002yry.2_Missense_Mutation_p.A362T|GART_uc002ysa.2_Missense_Mutation_p.A362T	NM_000819	NP_000810	P22102	PUR2_HUMAN	phosphoribosylglycinamide formyltransferase,	362					'de novo' IMP biosynthetic process|purine base biosynthetic process	cytosol	ATP binding|metal ion binding|methyltransferase activity|phosphoribosylamine-glycine ligase activity|phosphoribosylformylglycinamidine cyclo-ligase activity|phosphoribosylglycinamide formyltransferase activity|protein binding			ovary(1)	1					Pemetrexed(DB00642)	AGTCCTAGAGCTTGAGCCTCA	0.443													12	49					0	0	0.000978	0	0
DOPEY2	9980	broad.mit.edu	37	21	37623467	37623467	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:37623467G>A	uc002yvg.2	+	22	5085	c.5006G>A	c.(5005-5007)AGA>AAA	p.R1669K	DOPEY2_uc011aeb.1_Missense_Mutation_p.R1618K|DOPEY2_uc002yvh.2_Missense_Mutation_p.R520K	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1669					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TAGACCATAAGACAAAAAATT	0.453													17	98					0	0	0.006122	0	0
DSCR6	53820	broad.mit.edu	37	21	38390367	38390367	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:38390367G>A	uc002yvv.2	+	4	643	c.433G>A	c.(433-435)GAA>AAA	p.E145K	DSCR6_uc011aec.1_Silent_p.R31R|DSCR6_uc010gnd.2_Silent_p.R31R	NM_018962	NP_061835	P57055	DSCR6_HUMAN	Down syndrome critical region protein 6	145						nucleus				breast(1)	1		Myeloproliferative disorder(46;0.0632)				AGGTCGGCAGGAAAATGGCCC	0.632													14	25					0	0	0.001855	0	0
DSCAM	1826	broad.mit.edu	37	21	42080586	42080586	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:42080586G>A	uc002yyq.1	-	2	607	c.155C>T	c.(154-156)CCT>CTT	p.P52L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	52	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGTCACAGGAGGGATGCCTGC	0.597													43	137					0	0	0.002222	0	0
TMPRSS3	64699	broad.mit.edu	37	21	43815499	43815499	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:43815499C>T	uc002zbb.2	-	2	229	c.28G>A	c.(28-30)GAA>AAA	p.E10K	TMPRSS3_uc002zbc.2_Missense_Mutation_p.E10K|TMPRSS3_uc002zbd.2_Missense_Mutation_p.E10K	NM_024022	NP_076927	P57727	TMPS3_HUMAN	transmembrane protease, serine 3 isoform 1	10	Cytoplasmic (Potential).				cellular sodium ion homeostasis|proteolysis	endoplasmic reticulum membrane|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity|sodium channel regulator activity			ovary(2)|breast(1)	3						AAGGGGGCTTCAACAGCAGGC	0.507													10	49					0	0	0.000978	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45518270	45518271	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:45518270_45518271CC>TT	uc002zea.2	+	21	3370_3371	c.3201_3202CC>TT	c.(3199-3204)CCCCCT>CCTTCT	p.P1068S	TRAPPC10_uc010gpo.2_Missense_Mutation_p.P779S|TRAPPC10_uc011afa.1_Missense_Mutation_p.P446S|TRAPPC10_uc011afb.1_Missense_Mutation_p.P173S	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	1068					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						AGATCTTTCCCCCTTCGGGAAT	0.485													45	104					0	0	0.004672	0	0
LRRC3	81543	broad.mit.edu	37	21	45876772	45876772	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:45876772G>A	uc002zfa.2	+	2	538	c.245G>A	c.(244-246)GGG>GAG	p.G82E		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	82	LRR 1.					integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		CTCCCGGACGGGGCCTTCCAG	0.677													17	51					0	0	0.008871	0	0
KRTAP10-8	386681	broad.mit.edu	37	21	46032202	46032203	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:46032202_46032203CC>TT	uc002zfo.1	+	1	207_208	c.185_186CC>TT	c.(184-186)ACC>ATT	p.T62I	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198695	NP_941968	P60410	KR108_HUMAN	keratin associated protein 10-8	62	2.|19 X 5 AA repeats of C-C-X(3).					keratin filament				large_intestine(1)|breast(1)	2						AGCTGCTGTACCCCTAGCTGCT	0.673													16	37					0	0	0.004672	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46066510	46066510	+	Silent	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:46066510G>T	uc002zfr.3	+	1	180	c.135G>T	c.(133-135)CTG>CTT	p.L45L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	45	25 X 5 AA repeats of C-C-X(3).					keratin filament				ovary(1)	1						CCCTGAGCCTGGTCTGCACCC	0.701													15	45					1.3612e-06	1.81544e-06	0.003163	1	0
PCNT	5116	broad.mit.edu	37	21	47831639	47831639	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr21:47831639G>A	uc002zji.3	+	28	5759	c.5652G>A	c.(5650-5652)AAG>AAA	p.K1884K	PCNT_uc002zjj.2_Silent_p.K1766K	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1884	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					ACCAGCGGAAGGCGGCCCACT	0.667													9	38					0	0	0.004482	0	0
SUSD2	56241	broad.mit.edu	37	22	24584256	24584256	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:24584256C>T	uc002zzn.1	+	14	2449	c.2405C>T	c.(2404-2406)GCG>GTG	p.A802V		NM_019601	NP_062547	Q9UGT4	SUSD2_HUMAN	sushi domain containing 2 precursor	802	Helical; (Potential).				immune response	integral to membrane	polysaccharide binding|protein binding|scavenger receptor activity			skin(1)	1						GCGGCGGTTGCGCTCGTCTAT	0.677													22	65					0	0	0.005443	0	0
CRYBA4	1413	broad.mit.edu	37	22	27021494	27021494	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:27021494G>A	uc003acz.3	+	4	243	c.208G>A	c.(208-210)GAA>AAA	p.E70K		NM_001886	NP_001877	P53673	CRBA4_HUMAN	crystallin, beta A4	70	Beta/gamma crystallin 'Greek key' 2.				camera-type eye development|visual perception	soluble fraction	structural constituent of eye lens				0						GTACATTCTGGAACGAGGCGA	0.627													55	185					0	0	0.003610	0	0
NF2	4771	broad.mit.edu	37	22	30035088	30035088	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:30035088C>T	uc003age.3	+	3	693	c.250C>T	c.(250-252)CAT>TAT	p.H84Y	NF2_uc003afy.3_Missense_Mutation_p.H84Y|NF2_uc003afz.3_Intron|NF2_uc003agf.3_Missense_Mutation_p.H84Y|NF2_uc003agb.3_Missense_Mutation_p.H7Y|NF2_uc003agc.3_Missense_Mutation_p.H46Y|NF2_uc003agd.3_Intron|NF2_uc003agg.3_Missense_Mutation_p.H84Y|NF2_uc003aga.3_Missense_Mutation_p.H42Y|NF2_uc003agh.3_Intron|NF2_uc003agi.3_Intron|NF2_uc003agj.3_Missense_Mutation_p.H84Y|NF2_uc003agk.3_Missense_Mutation_p.H46Y	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	84	FERM.				actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.H84_F100del(1)|p.H84fs*39(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						GGTACTGGATCATGATGTTTC	0.433			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				35	43					0	0	0.003271	0	0
SF3A1	10291	broad.mit.edu	37	22	30741175	30741175	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:30741175T>G	uc003ahl.2	-	4	530	c.398A>C	c.(397-399)CAA>CCA	p.Q133P		NM_005877	NP_005868	Q15459	SF3A1_HUMAN	splicing factor 3a, subunit 1, 120kDa isoform 1	133					nuclear mRNA 3'-splice site recognition	catalytic step 2 spliceosome|nucleoplasm|U2-type spliceosomal complex	protein binding|RNA binding			ovary(3)|large_intestine(1)|pancreas(1)	5						TACTTGGGCTTGGACCTAAGA	0.493													67	122					0	0	0.003610	0	0
PES1	23481	broad.mit.edu	37	22	30976584	30976584	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:30976584G>A	uc003aij.1	-	10	1091	c.1017C>T	c.(1015-1017)CCC>CCT	p.P339P	PES1_uc003aik.1_Silent_p.P334P|PES1_uc003ail.1_Silent_p.P322P|PES1_uc003aim.1_Silent_p.P339P|PES1_uc003ain.1_Silent_p.P200P|PES1_uc003aio.1_Silent_p.P200P	NM_014303	NP_055118	O00541	PESC_HUMAN	pescadillo homolog 1, containing BRCT domain	339	Sufficient for interaction with MAP1B (By similarity).|BRCT.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|regulation of cell cycle	chromosome|nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						GGGCCTCACGGGGCACCTCTC	0.612													25	78					0	0	0.002780	0	0
MORC2	22880	broad.mit.edu	37	22	31324111	31324111	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:31324111G>A	uc003aje.1	-	26	4103	c.2739C>T	c.(2737-2739)GCC>GCT	p.A913A		NM_014941	NP_055756	Q9Y6X9	MORC2_HUMAN	MORC family CW-type zinc finger 2	975	Potential.						ATP binding|zinc ion binding			ovary(1)|pancreas(1)	2						TTTCCTCGGAGGCCTTGGCCC	0.577													23	53					0	0	0.002780	0	0
LIMK2	3985	broad.mit.edu	37	22	31656015	31656015	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:31656015C>T	uc003akh.2	+	5	648	c.503C>T	c.(502-504)TCC>TTC	p.S168F	LIMK2_uc003akg.2_Missense_Mutation_p.S85F|LIMK2_uc003aki.2_Intron|LIMK2_uc003akj.2_Missense_Mutation_p.S147F|LIMK2_uc003akk.2_Missense_Mutation_p.S147F|LIMK2_uc011aln.1_Missense_Mutation_p.S85F	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	168	PDZ.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						TTCTCCGTGTCCGTGGAGAGT	0.552													23	82					0	0	0.006320	0	0
TIMP3	7078	broad.mit.edu	37	22	33255299	33255299	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:33255299T>A	uc003anb.2	+	5	1757	c.571T>A	c.(571-573)TAC>AAC	p.Y191N	SYN3_uc003amx.2_Intron|SYN3_uc003amy.2_Intron|SYN3_uc003amz.2_Intron	NM_000362	NP_000353	P35625	TIMP3_HUMAN	tissue inhibitor of metalloproteinase 3	191			Y -> C (in SFD).		negative regulation of membrane protein ectodomain proteolysis|visual perception		metal ion binding|metalloendopeptidase inhibitor activity|protein binding			lung(1)	1						GAAGGGCGGCTACTGCAGCTG	0.592													14	56					0	0	0.002450	0	0
MYH9	4627	broad.mit.edu	37	22	36681727	36681727	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:36681727G>A	uc003apg.2	-	37	5482	c.5251C>T	c.(5251-5253)CGG>TGG	p.R1751W		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1751	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						TTCTTCAGCCGGTCGTTGATC	0.577			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				12	35					0	0	0.001368	0	0
GGA1	26088	broad.mit.edu	37	22	38021897	38021897	+	Missense_Mutation	SNP	C	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:38021897C>G	uc003atc.2	+	11	1399	c.1034C>G	c.(1033-1035)GCC>GGC	p.A345G	GGA1_uc003atd.2_Intron|GGA1_uc003ate.2_Missense_Mutation_p.A345G|GGA1_uc003atf.2_Missense_Mutation_p.A272G	NM_013365	NP_037497	Q9UJY5	GGA1_HUMAN	golgi associated, gamma adaptin ear containing,	345	Unstructured hinge.				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|Golgi apparatus part	protein binding			breast(2)|ovary(1)	3	Melanoma(58;0.0574)					GGCGAGCAGGCCAGCCCTGAG	0.687													31	69					0	0	0.005524	0	0
EIF3L	51386	broad.mit.edu	37	22	38273723	38273723	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:38273723G>A	uc003auf.2	+	11	1207	c.1120G>A	c.(1120-1122)GCC>ACC	p.A374T	EIF3L_uc003aue.1_Missense_Mutation_p.A374T|EIF3L_uc011ann.1_Missense_Mutation_p.A326T|EIF3L_uc003aug.2_Missense_Mutation_p.A266T|EIF3L_uc003auh.2_Missense_Mutation_p.A107T	NM_016091	NP_057175	Q9Y262	EIF3L_HUMAN	eukaryotic translation initiation factor 3	374						eukaryotic translation initiation factor 3 complex	protein binding|translation initiation factor activity			ovary(1)	1						GCTGGCCATTGCCCTCACGAT	0.542													34	93					0	0	0.005524	0	0
ENTHD1	150350	broad.mit.edu	37	22	40161320	40161320	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:40161320C>T	uc003ayg.2	-	6	1378	c.1127G>A	c.(1126-1128)CGA>CAA	p.R376Q		NM_152512	NP_689725	Q8IYW4	ENTD1_HUMAN	ENTH domain containing 1	376										ovary(2)|skin(1)	3	Melanoma(58;0.0749)					CTCCTTCACTCGGTCAAATAT	0.443													34	60					0	0	0.002836	0	0
GRAP2	9402	broad.mit.edu	37	22	40364204	40364204	+	Missense_Mutation	SNP	A	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:40364204A>C	uc003ayh.1	+	6	881	c.618A>C	c.(616-618)CAA>CAC	p.Q206H	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Missense_Mutation_p.Q180H|GRAP2_uc011aon.1_Missense_Mutation_p.Q140H|GRAP2_uc010gya.1_Missense_Mutation_p.Q206H|GRAP2_uc011aoo.1_Missense_Mutation_p.Q134H|GRAP2_uc011aop.1_Missense_Mutation_p.Q166H|GRAP2_uc011aoq.1_Missense_Mutation_p.Q93H|GRAP2_uc003ayj.1_Missense_Mutation_p.Q206H	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	206					cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						agcctccgcaatatgccccag	0.299													5	7					0	0	0.000602	0	0
SLC25A17	10478	broad.mit.edu	37	22	41173251	41173251	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:41173251A>T	uc003azc.2	-	6	718	c.578T>A	c.(577-579)CTT>CAT	p.L193H	SLC25A17_uc010gyg.2_RNA|SLC25A17_uc011aou.1_Missense_Mutation_p.L156H|SLC25A17_uc003azd.2_RNA|SLC25A17_uc011aov.1_Missense_Mutation_p.L120H	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;	193	Cytoplasmic (Potential).				fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						TTTCTTTAAAAGCTGCCGTTT	0.383													8	29					0	0	0.004482	0	0
MPPED1	758	broad.mit.edu	37	22	43821049	43821049	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:43821049C>T	uc011apv.1	+	2	281	c.58C>T	c.(58-60)CCC>TCC	p.P20S	MPPED1_uc011apw.1_Intron|MPPED1_uc011apx.1_Intron|MPPED1_uc011apy.1_Missense_Mutation_p.P20S|MPPED1_uc011apz.1_Missense_Mutation_p.P53S	NM_001044370	NP_001037835	O15442	MPPD1_HUMAN	metallophosphoesterase domain containing 1	20							hydrolase activity				0		all_neural(38;0.0244)|Ovarian(80;0.0694)				GGCCCTCCTCCCCTGCGGCCT	0.701													9	22					0	0	0.004482	0	0
PPARA	5465	broad.mit.edu	37	22	46594430	46594430	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:46594430C>T	uc003bgw.1	+	4	416	c.150C>T	c.(148-150)GGC>GGT	p.G50G	PPARA_uc003bgx.1_Silent_p.G50G|PPARA_uc010hab.1_Silent_p.G50G|PPARA_uc003bgy.1_RNA|PPARA_uc003bgz.1_RNA|PPARA_uc003bha.2_Silent_p.G50G|PPARA_uc003bhb.1_Silent_p.G50G|PPARA_uc010hac.1_5'UTR	NM_005036	NP_005027	Q07869	PPARA_HUMAN	peroxisome proliferative activated receptor,	50					fatty acid metabolic process|fatty acid transport|negative regulation of appetite|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|positive regulation of fatty acid beta-oxidation|regulation of cellular ketone metabolic process by positive regulation of transcription from an RNA polymerase II promoter|regulation of glycolysis by positive regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by positive regulation of transcription from an RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	drug binding|ligand-regulated transcription factor activity|lipid binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|ubiquitin conjugating enzyme binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00522)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Clofibrate(DB00636)|Fenofibrate(DB01039)|Gemfibrozil(DB01241)|Simvastatin(DB00641)	GAAGCTTTGGCTTTACGGAAT	0.453													43	103					0	0	0.003610	0	0
PKDREJ	10343	broad.mit.edu	37	22	46655715	46655715	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:46655715G>A	uc003bhh.2	-	1	3505	c.3505C>T	c.(3505-3507)CCT>TCT	p.P1169S		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	1169	Extracellular (Potential).				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AGATCCACAGGATTAGGGATC	0.493													75	132					0	0	0.003610	0	0
CELSR1	9620	broad.mit.edu	37	22	46930151	46930151	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:46930151G>A	uc003bhw.1	-	1	2917	c.2917C>T	c.(2917-2919)CGG>TGG	p.R973W		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	973	Extracellular (Potential).|Cadherin 7.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		GGACTGCCCCGATCCACAGCC	0.582													37	76					0	0	0.007835	0	0
PANX2	56666	broad.mit.edu	37	22	50615991	50615991	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr22:50615991G>A	uc003bjn.3	+	2	850	c.850G>A	c.(850-852)GTG>ATG	p.V284M	PANX2_uc003bjp.3_Missense_Mutation_p.V150M|PANX2_uc003bjo.3_Missense_Mutation_p.V284M	NM_052839	NP_443071	Q96RD6	PANX2_HUMAN	pannexin 2 isoform 1	284	Extracellular (Potential).				protein hexamerization|synaptic transmission	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity			breast(1)	1		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		GCTCCCGTCCGTGCAACTGCA	0.657													10	47					0	0	0.008291	0	0
CHL1	10752	broad.mit.edu	37	3	424225	424225	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:424225G>A	uc003bou.2	+	17	2270	c.1999G>A	c.(1999-2001)GGA>AGA	p.G667R	CHL1_uc003bot.2_Missense_Mutation_p.G683R|CHL1_uc003bow.1_Missense_Mutation_p.G667R|CHL1_uc011asi.1_Missense_Mutation_p.G683R|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	667	Fibronectin type-III 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		CAGAGTCCAAGGAAAGAAAAC	0.433													33	86					0	0	0.002445	0	0
CNTN4	152330	broad.mit.edu	37	3	3078995	3078995	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:3078995G>A	uc003bpc.2	+	17	2296	c.2075G>A	c.(2074-2076)CGG>CAG	p.R692Q	CNTN4_uc003bpb.1_Missense_Mutation_p.R363Q|CNTN4_uc003bpd.1_Missense_Mutation_p.R692Q|CNTN4_uc003bpe.2_Missense_Mutation_p.R364Q|CNTN4_uc003bpf.2_Missense_Mutation_p.R363Q|CNTN4_uc003bpg.2_5'Flank	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	692	Fibronectin type-III 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TCAGAGAAACGGAGAACAGAA	0.522													45	187					0	0	0.003610	0	0
GRM7	2917	broad.mit.edu	37	3	7348256	7348256	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:7348256G>A	uc003bqm.2	+	4	1224	c.950G>A	c.(949-951)GGA>GAA	p.G317E	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.G317E|GRM7_uc003bql.2_Missense_Mutation_p.G317E|GRM7_uc003bqn.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	317	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GACAGCTGGGGATCCAAAATA	0.493													30	77					0	0	0.002445	0	0
FANCD2	2177	broad.mit.edu	37	3	10089610	10089610	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:10089610G>A	uc003buw.2	+	16	1366	c.1288G>A	c.(1288-1290)GAT>AAT	p.D430N	FANCD2_uc003bux.1_Missense_Mutation_p.D430N|FANCD2_uc003buy.1_Missense_Mutation_p.D430N|FANCD2_uc010hcw.1_5'Flank	NM_033084	NP_149075	Q9BXW9	FACD2_HUMAN	Fanconi anemia complementation group D2 isoform	430					DNA repair|response to gamma radiation	nucleoplasm	protein binding|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.148)		GGTTCTTAAGGATATGTGTTC	0.398			D|Mis|N|F			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				36	312					0	0	0.002522	0	0
SLC6A1	6529	broad.mit.edu	37	3	11076345	11076345	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:11076345G>A	uc010hdq.2	+	15	2067	c.1656G>A	c.(1654-1656)ATG>ATA	p.M552I		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	552	Helical; Name=12; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	CCGGGTACATGGCCTACATGT	0.542													40	85					0	0	0.003610	0	0
PPARG	5468	broad.mit.edu	37	3	12421306	12421306	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:12421306C>T	uc003bwx.2	+	2	277	c.186C>T	c.(184-186)ATC>ATT	p.I62I	PPARG_uc003bwr.2_Silent_p.I34I|PPARG_uc003bws.2_Silent_p.I34I|PPARG_uc003bwu.2_Silent_p.I34I|PPARG_uc003bwv.2_Silent_p.I34I|PPARG_uc010hea.1_RNA|PPARG_uc003bwq.1_Silent_p.I34I|PPARG_uc010hdz.1_RNA|PPARG_uc003bwt.1_Silent_p.I34I|PPARG_uc003bww.1_Silent_p.I62I	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	62					activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	CCTTTGATATCAAGCCCTTCA	0.468			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						208	556					0	0	0.003610	0	0
FBLN2	2199	broad.mit.edu	37	3	13613099	13613099	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:13613099C>T	uc011avb.1	+	2	1369	c.1244C>T	c.(1243-1245)TCC>TTC	p.S415F	FBLN2_uc011auz.1_Missense_Mutation_p.S441F|FBLN2_uc011ava.1_Missense_Mutation_p.S415F|FBLN2_uc011avc.1_Missense_Mutation_p.S415F	NM_001998	NP_001989	P98095	FBLN2_HUMAN	fibulin 2 isoform b precursor	415	Subdomain NB (Cys-free).|N.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (1;0.00416)			CTGCCCCATTCCCACGTGGAG	0.582													8	26					0	0	0.006214	0	0
WNT7A	7476	broad.mit.edu	37	3	13860792	13860792	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:13860792G>A	uc003bye.1	-	4	1004	c.699C>T	c.(697-699)AAC>AAT	p.N233N		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	233					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						GAACGGCCTCGTTGTACTTGT	0.612													39	56					0	0	0.004878	0	0
TOP2B	7155	broad.mit.edu	37	3	25674191	25674191	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:25674191G>A	uc011awn.1	-	9	1164	c.1121C>T	c.(1120-1122)CCA>CTA	p.P374L	TOP2B_uc003cdj.2_Missense_Mutation_p.P369L	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	374					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TACTTGAAATGGTTTCACTGA	0.333													36	98					0	0	0.004289	0	0
EOMES	8320	broad.mit.edu	37	3	27759217	27759217	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:27759217G>A	uc003cdx.2	-	6	1405	c.1405C>T	c.(1405-1407)CGG>TGG	p.R469W	EOMES_uc003cdy.3_Missense_Mutation_p.R488W|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Missense_Mutation_p.R193W	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	469					CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						ACGCCGTACCGACCTCCAGGG	0.493													20	46					0	0	0.008871	0	0
CMTM6	54918	broad.mit.edu	37	3	32529466	32529466	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:32529466G>A	uc003cfa.1	-	3	544	c.378C>T	c.(376-378)TCC>TCT	p.S126S		NM_017801	NP_060271	Q9NX76	CKLF6_HUMAN	CKLF-like MARVEL transmembrane domain containing	126	MARVEL.|Helical; (Potential).				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						TGTCATGTGTGGAAACAAAAA	0.328													12	26					0	0	0.001855	0	0
CLASP2	23122	broad.mit.edu	37	3	33552178	33552178	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:33552178G>A	uc003cfu.2	-	36	4543	c.4189C>T	c.(4189-4191)CCT>TCT	p.P1397S	CLASP2_uc003cfs.2_Missense_Mutation_p.P604S|CLASP2_uc003cft.2_RNA|CLASP2_uc010hgb.2_RNA	NM_015097	NP_055912	B2RTR1	B2RTR1_HUMAN	CLIP-associating protein 2	1406										ovary(3)|central_nervous_system(1)	4						TGAATGATAGGACAAAGCACT	0.413													10	31					0	0	0.000978	0	0
XIRP1	165904	broad.mit.edu	37	3	39226199	39226199	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:39226199C>T	uc003cjk.1	-	2	4959	c.4738G>A	c.(4738-4740)GAC>AAC	p.D1580N	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.D263N	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1580							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GCACTGTGGTCTTTTGGAGGT	0.587													64	167					0	0	0.003610	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307278	39307278	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:39307278G>A	uc003cjl.2	-	2	815	c.723C>T	c.(721-723)TTC>TTT	p.F241F		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	241	Helical; Name=6; (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		TCCAGAAGAGGAAAAACACGA	0.458													45	80					0	0	0.002222	0	0
ULK4	54986	broad.mit.edu	37	3	41996125	41996125	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:41996125T>A	uc003ckv.3	-	2	328	c.127A>T	c.(127-129)ATA>TTA	p.I43L	ULK4_uc003ckw.2_Missense_Mutation_p.I43L|ULK4_uc003ckx.1_Missense_Mutation_p.I43L	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	43	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CAGTTGGTTATTTCAGGCCTT	0.423													33	78					0	0	0.003271	0	0
LARS2	23395	broad.mit.edu	37	3	45589003	45589004	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:45589003_45589004AC>TT	uc003cop.1	+	22	2878_2879	c.2693_2694AC>TT	c.(2692-2694)AAC>ATT	p.N898I	LARS2_uc010hit.1_Missense_Mutation_p.N855I	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	898					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	GCCCTCATCAACTTCCTGGTGC	0.559													31	108					0	0	0.004672	0	0
LTF	4057	broad.mit.edu	37	3	46480832	46480832	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:46480832C>T	uc003cpq.2	-	15	1901	c.1863G>A	c.(1861-1863)CGG>CGA	p.R621R	LTF_uc003fzr.2_Silent_p.R577R|LTF_uc010hjh.2_Silent_p.R619R|LTF_uc003cpr.2_Silent_p.R608R	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	621	Transferrin-like 2.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	CCTTATCCATCCGAGACACCA	0.552													40	73					0	0	0.002852	0	0
LTF	4057	broad.mit.edu	37	3	46497310	46497310	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:46497310C>T	uc003cpq.2	-	4	513	c.475G>A	c.(475-477)GGT>AGT	p.G159S	LTF_uc003fzr.2_Missense_Mutation_p.G115S|LTF_uc010hjh.2_Missense_Mutation_p.G159S|LTF_uc003cpr.2_Missense_Mutation_p.G146S	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	159	Transferrin-like 1.				cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	TCAGGTGGACCCGTCCAATTC	0.562													18	40					0	0	0.008871	0	0
CAMKV	79012	broad.mit.edu	37	3	49897086	49897086	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:49897086C>T	uc003cxt.1	-	11	1364	c.1171G>A	c.(1171-1173)GAT>AAT	p.D391N	CAMKV_uc011bcy.1_Missense_Mutation_p.D316N|CAMKV_uc003cxv.1_Missense_Mutation_p.D363N|CAMKV_uc003cxw.1_Missense_Mutation_p.D223N|CAMKV_uc003cxx.1_Missense_Mutation_p.D223N|CAMKV_uc003cxu.2_Missense_Mutation_p.D360N|CAMKV_uc011bcz.1_Missense_Mutation_p.D323N|CAMKV_uc011bda.1_Missense_Mutation_p.D317N	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	391	Ala-rich.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GCACTTCCATCTGTGGCTGGG	0.617													79	158					0	0	0.003610	0	0
CACNA1D	776	broad.mit.edu	37	3	53781413	53781413	+	Silent	SNP	C	T	T	rs139767790		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:53781413C>T	uc003dgv.3	+	26	3415	c.3252C>T	c.(3250-3252)TTC>TTT	p.F1084F	CACNA1D_uc003dgu.3_Silent_p.F1104F|CACNA1D_uc003dgy.3_Silent_p.F1084F|CACNA1D_uc003dgw.3_Silent_p.F751F|CACNA1D_uc003dgx.1_Silent_p.F232F	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1084	Extracellular (Potential).|Dihydropyridine binding (By similarity).|III.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	ATTTCAACTTCGACAACGTCC	0.527													51	100					0	0	0.003610	0	0
ACTR8	93973	broad.mit.edu	37	3	53907082	53907082	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:53907082G>A	uc003dhd.2	-	9	1197	c.1138C>T	c.(1138-1140)CGA>TGA	p.R380*	ACTR8_uc003dhb.2_Nonsense_Mutation_p.R85*|ACTR8_uc003dhc.2_Nonsense_Mutation_p.R269*	NM_022899	NP_075050	Q9H981	ARP8_HUMAN	actin-related protein 8	380					cell division|DNA recombination|DNA repair|mitosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex	protein binding			ovary(1)|central_nervous_system(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000143)|KIRC - Kidney renal clear cell carcinoma(284;0.00544)|Kidney(284;0.00607)|OV - Ovarian serous cystadenocarcinoma(275;0.111)		TCTCCTAATCGAAACTGGTAA	0.433													10	22					0	0	0.008291	0	0
FLNB	2317	broad.mit.edu	37	3	58084616	58084616	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:58084616C>T	uc003djj.2	+	8	1491	c.1326C>T	c.(1324-1326)TTC>TTT	p.F442F	FLNB_uc010hne.2_Silent_p.F442F|FLNB_uc003djk.2_Silent_p.F442F|FLNB_uc010hnf.2_Silent_p.F442F|FLNB_uc003djl.2_Silent_p.F273F|FLNB_uc003djm.2_Silent_p.F273F	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	442	Filamin 2.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		AGAGTCCCTTCGTTGTGCAGG	0.547													38	88					0	0	0.007835	0	0
FLNB	2317	broad.mit.edu	37	3	58094938	58094938	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:58094938G>A	uc003djj.2	+	14	2253	c.2088G>A	c.(2086-2088)ATG>ATA	p.M696I	FLNB_uc010hne.2_Missense_Mutation_p.M696I|FLNB_uc003djk.2_Missense_Mutation_p.M696I|FLNB_uc010hnf.2_Missense_Mutation_p.M696I|FLNB_uc003djl.2_Missense_Mutation_p.M527I|FLNB_uc003djm.2_Missense_Mutation_p.M527I	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	696	Filamin 5.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		ACATCCAGATGAAGAACCGGA	0.557													24	48					0	0	0.005443	0	0
OR5H14	403273	broad.mit.edu	37	3	97868569	97868569	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:97868569C>T	uc003dsg.1	+	1	340	c.340C>T	c.(340-342)CTC>TTC	p.L114F		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GGAATGTTTTCTCTTGGCAAC	0.398													38	167					0	0	0.005524	0	0
OR5H15	403274	broad.mit.edu	37	3	97888369	97888369	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:97888369C>T	uc011bgu.1	+	1	826	c.826C>T	c.(826-828)CTA>TTA	p.L276L		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGTGGAGCCTCTATTCTACAC	0.388													17	56					0	0	0.004990	0	0
IFT57	55081	broad.mit.edu	37	3	107885736	107885736	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:107885736G>A	uc003dwx.3	-	8	1194	c.946C>T	c.(946-948)CAA>TAA	p.Q316*		NM_018010	NP_060480	Q9NWB7	IFT57_HUMAN	estrogen-related receptor beta like 1	316	Potential.				activation of caspase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cilium|microtubule basal body	DNA binding|protein binding			ovary(1)|skin(1)|pancreas(1)	3			OV - Ovarian serous cystadenocarcinoma(3;0.0428)|Epithelial(53;0.246)			CGATATTCTTGAACCAAATTC	0.378													20	36					0	0	0.001523	0	0
PHLDB2	90102	broad.mit.edu	37	3	111658439	111658439	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:111658439G>A	uc010hqa.2	+	7	2659	c.2248G>A	c.(2248-2250)GAA>AAA	p.E750K	PHLDB2_uc003dyc.2_Missense_Mutation_p.E734K|PHLDB2_uc003dyd.2_Missense_Mutation_p.E707K|PHLDB2_uc003dyg.2_Missense_Mutation_p.E750K|PHLDB2_uc003dyh.2_Missense_Mutation_p.E707K|PHLDB2_uc003dyi.2_Missense_Mutation_p.E336K	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	750	Potential.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GCTCCTGCGTGAAGTTGCTGA	0.393													8	33					0	0	0.006214	0	0
SLC9A10	285335	broad.mit.edu	37	3	111901021	111901021	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:111901021G>A	uc003dyu.2	-	21	2830	c.2608C>T	c.(2608-2610)CCG>TCG	p.P870S	SLC9A10_uc011bhu.1_Missense_Mutation_p.P133S|SLC9A10_uc010hqc.2_Missense_Mutation_p.P822S	NM_183061	NP_898884	Q4G0N8	S9A10_HUMAN	sperm-specific sodium proton exchanger	870	cNMP.				cell differentiation|multicellular organismal development|sodium ion transport|spermatogenesis	cilium|flagellar membrane|integral to membrane	solute:hydrogen antiporter activity			ovary(3)|breast(2)	5						TCTAGCCACGGAATATGATAT	0.219													11	73					0	0	0.000978	0	0
KIAA2018	205717	broad.mit.edu	37	3	113378005	113378005	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:113378005C>T	uc003eam.2	-	7	2935	c.2524G>A	c.(2524-2526)GAA>AAA	p.E842K	KIAA2018_uc003eal.2_Missense_Mutation_p.E786K	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	842					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						GGGAAGCTTTCTAGCAGTCCA	0.478													9	48					0	0	0.004482	0	0
KIAA1407	57577	broad.mit.edu	37	3	113724706	113724706	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:113724706G>A	uc003eax.2	-	10	1664	c.1517C>T	c.(1516-1518)TCC>TTC	p.S506F	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Missense_Mutation_p.S484F|KIAA1407_uc011bip.1_Missense_Mutation_p.S493F	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	506										ovary(2)	2						ATTCTGAAGGGAACCCTGCAA	0.547													69	105					0	0	0.003610	0	0
LRRC58	116064	broad.mit.edu	37	3	120054784	120054784	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:120054784G>A	uc003edr.2	-	2	613	c.517C>T	c.(517-519)CTT>TTT	p.L173F		NM_001099678	NP_001093148	Q96CX6	LRC58_HUMAN	leucine rich repeat containing 58	173	LRR 6.										0				GBM - Glioblastoma multiforme(114;0.147)		TTTCCTCCAAGATATAAACAC	0.313													9	42					0	0	0.004482	0	0
NDUFB4	4710	broad.mit.edu	37	3	120315215	120315215	+	Silent	SNP	C	T	T	rs139409401	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:120315215C>T	uc003edu.2	+	1	88	c.9C>T	c.(7-9)TTC>TTT	p.F3F	NDUFB4_uc003edt.2_Silent_p.F3F	NM_004547	NP_004538	O95168	NDUB4_HUMAN	NADH dehydrogenase (ubiquinone) 1 beta	3					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	integral to membrane|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0				GBM - Glioblastoma multiforme(114;0.14)	NADH(DB00157)	AGATGTCGTTCCCAAAGTATA	0.597													8	26					0	0	0.000978	0	0
POLQ	10721	broad.mit.edu	37	3	121207738	121207738	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:121207738G>A	uc003eee.3	-	16	4169	c.4040C>T	c.(4039-4041)ACC>ATC	p.T1347I	POLQ_uc003eed.2_Missense_Mutation_p.T519I	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	1347					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TGCCAGGTTGGTGTCCTTTGC	0.423								DNA_polymerases_(catalytic_subunits)					30	108					0	0	0.003755	0	0
CD86	942	broad.mit.edu	37	3	121828111	121828111	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:121828111G>A	uc003eet.2	+	5	820	c.704_splice	c.e5-1	p.E235_splice	CD86_uc011bjo.1_Splice_Site_p.E153_splice|CD86_uc011bjp.1_Splice_Site_p.E123_splice|CD86_uc003eeu.2_Splice_Site_p.E229_splice	NM_175862	NP_787058	P42081	CD86_HUMAN	CD86 antigen isoform 1						interspecies interaction between organisms|positive regulation of cell proliferation|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-4 biosynthetic process|positive regulation of lymphotoxin A biosynthetic process|positive regulation of T-helper 2 cell differentiation|positive regulation of transcription, DNA-dependent|T cell costimulation		coreceptor activity|protein binding			pancreas(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.156)	Abatacept(DB01281)	GTCATTTGTAGAGCTTGAGGA	0.443													15	50					0	0	0.003163	0	0
MUC13	56667	broad.mit.edu	37	3	124632523	124632523	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:124632523G>A	uc003ehq.1	-	7	991	c.967C>T	c.(967-969)CTT>TTT	p.L323F		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	323	EGF-like 2.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						TCACACCGAAGGGTCACTGAG	0.413													8	27					0	0	0.006214	0	0
MUC13	56667	broad.mit.edu	37	3	124646508	124646508	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:124646508C>T	uc003ehq.1	-	2	406	c.382G>A	c.(382-384)GGA>AGA	p.G128R		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	128	Thr-rich.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane					0						GTGATTAATCCATCATTTGGA	0.433													62	137					0	0	0.003610	0	0
COL29A1	256076	broad.mit.edu	37	3	130095535	130095535	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:130095535G>A	uc010htj.1	+	3	1017	c.523G>A	c.(523-525)GAA>AAA	p.E175K	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	175	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						AGCTTCTGAGGAAAATCTGAA	0.493													3	14					0	0	0.004672	0	0
MRAS	22808	broad.mit.edu	37	3	138116269	138116269	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:138116269C>T	uc003esh.3	+	3	858	c.297C>T	c.(295-297)AGC>AGT	p.S99S	MRAS_uc011bmi.1_Silent_p.S23S|MRAS_uc003esi.3_Silent_p.S99S|MRAS_uc011bmj.1_Silent_p.S23S	NM_012219	NP_036351	O14807	RASM_HUMAN	muscle RAS oncogene homolog precursor	99					actin cytoskeleton organization|muscle organ development|Ras protein signal transduction	intracellular|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity			lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ACAAGGCCAGCTTTGAGCACG	0.592													136	248					0	0	0.003610	0	0
AGTR1	185	broad.mit.edu	37	3	148459199	148459199	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:148459199G>A	uc003ewg.2	+	4	823	c.377G>A	c.(376-378)CGA>CAA	p.R126Q	AGTR1_uc003ewh.2_Missense_Mutation_p.R126Q|AGTR1_uc003ewi.2_Missense_Mutation_p.R126Q|AGTR1_uc003ewj.2_Missense_Mutation_p.R126Q|AGTR1_uc003ewk.2_Missense_Mutation_p.R126Q	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	126	Cytoplasmic (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	AGCATTGATCGATACCTGGCT	0.507													23	146					0	0	0.002780	0	0
RSRC1	51319	broad.mit.edu	37	3	158262013	158262013	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:158262013G>A	uc003fbt.2	+	10	1065	c.954G>A	c.(952-954)AAG>AAA	p.K318K	RSRC1_uc003fbv.2_Silent_p.K260K	NM_016625	NP_057709	Q96IZ7	RSRC1_HUMAN	arginine/serine-rich coiled-coil 1	318					nucleocytoplasmic transport	cytoplasm|nuclear speck	protein binding				0			Lung(72;0.00416)|LUSC - Lung squamous cell carcinoma(72;0.00575)			AATGGTTCAAGAGATTAATTG	0.348													41	101					0	0	0.003610	0	0
SI	6476	broad.mit.edu	37	3	164714367	164714367	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:164714367C>T	uc003fei.2	-	40	4710	c.4648G>A	c.(4648-4650)GCA>ACA	p.A1550T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1550	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGATAAAATGCTCCAAGTTGC	0.328										HNSCC(35;0.089)			12	54					0	0	0.001368	0	0
ZBBX	79740	broad.mit.edu	37	3	167031806	167031806	+	Missense_Mutation	SNP	A	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:167031806A>G	uc003fep.2	-	16	1696	c.1373T>C	c.(1372-1374)CTT>CCT	p.L458P	ZBBX_uc011bpc.1_Missense_Mutation_p.L458P|ZBBX_uc003feq.2_Missense_Mutation_p.L429P	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	458						intracellular	zinc ion binding			ovary(2)	2						TCTCAGACAAAGATTTAAGAA	0.308													25	113					0	0	0.004656	0	0
MECOM	2122	broad.mit.edu	37	3	168834494	168834494	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:168834494G>A	uc003ffi.3	-	7	871	c.602C>T	c.(601-603)TCA>TTA	p.S201L	MECOM_uc010hwk.1_Missense_Mutation_p.S224L|MECOM_uc003ffj.3_Missense_Mutation_p.S266L|MECOM_uc011bpi.1_Missense_Mutation_p.S202L|MECOM_uc003ffn.3_Missense_Mutation_p.S201L|MECOM_uc003ffk.2_Missense_Mutation_p.S201L|MECOM_uc003ffl.2_Missense_Mutation_p.S361L|MECOM_uc011bpj.1_Missense_Mutation_p.S389L|MECOM_uc011bpk.1_Missense_Mutation_p.S191L|MECOM_uc010hwn.2_Missense_Mutation_p.S389L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	201	Interaction with MAPK9, SMAD3 and probably SUV39H1.|C2H2-type 6.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GCAAAGGTTTGAAAACTGAGT	0.388													35	54					0	0	0.004878	0	0
SAMD7	344658	broad.mit.edu	37	3	169646316	169646316	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:169646316G>A	uc003fgd.2	+	7	1258	c.991G>A	c.(991-993)GAT>AAT	p.D331N	SAMD7_uc003fge.2_Missense_Mutation_p.D331N|SAMD7_uc011bpo.1_Missense_Mutation_p.D232N	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	331	SAM.									skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GACCGTGGATGATGTGCACAG	0.388													35	102					0	0	0.004878	0	0
CLDN1	9076	broad.mit.edu	37	3	190026224	190026224	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr3:190026224C>T	uc003fsh.2	-	4	698	c.478G>A	c.(478-480)GAA>AAA	p.E160K		NM_021101	NP_066924	O95832	CLD1_HUMAN	claudin 1	160	Extracellular (Potential).				calcium-independent cell-cell adhesion|interspecies interaction between organisms	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity			lung(1)	1	all_cancers(143;2.95e-10)|Ovarian(172;0.0512)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.015)		TGACCAAATTCGTACCTAAAA	0.398													11	37					0	0	0.000978	0	0
PDE6B	5158	broad.mit.edu	37	4	628613	628613	+	Missense_Mutation	SNP	G	A	A	rs140444984		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:628613G>A	uc003gap.2	+	2	669	c.616G>A	c.(616-618)GAA>AAA	p.E206K	PDE6B_uc003gao.3_Missense_Mutation_p.E206K	NM_000283	NP_000274	P35913	PDE6B_HUMAN	phosphodiesterase 6B isoform 1	206	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|phototransduction, visible light|platelet activation|visual perception	cytosol|membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding				0						CAGCGAAGACGAAGATGTGAG	0.393													12	55					0	0	0.004007	0	0
TMEM175	84286	broad.mit.edu	37	4	946159	946159	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:946159C>T	uc003gbq.2	+	7	481	c.383C>T	c.(382-384)TCG>TTG	p.S128L	TMEM175_uc010ibl.1_Missense_Mutation_p.S128L|TMEM175_uc003gbp.1_Missense_Mutation_p.S46L|TMEM175_uc003gbr.2_Missense_Mutation_p.S46L|TMEM175_uc003gbu.2_Missense_Mutation_p.S46L|TMEM175_uc003gbs.2_Missense_Mutation_p.S11L|TMEM175_uc003gbt.2_Missense_Mutation_p.S11L|TMEM175_uc003gbv.2_Missense_Mutation_p.S11L|TMEM175_uc010ibm.2_5'UTR	NM_032326	NP_115702	Q9BSA9	TM175_HUMAN	transmembrane protein 175	128	Helical; (Potential).					integral to membrane					0			OV - Ovarian serous cystadenocarcinoma(23;0.0158)			TAACAGTTTTCGTTAATGGTG	0.562													59	157					0	0	0.003610	0	0
TBC1D14	57533	broad.mit.edu	37	4	7026970	7026970	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:7026970G>A	uc011bwg.1	+	13	2076	c.1997G>A	c.(1996-1998)CGA>CAA	p.R666Q	TBC1D14_uc003gjs.3_Missense_Mutation_p.R666Q|TBC1D14_uc010idh.2_Missense_Mutation_p.R386Q|TBC1D14_uc011bwh.1_Missense_Mutation_p.R313Q|TBC1D14_uc003gju.3_Missense_Mutation_p.R157Q	NM_001113361	NP_001106832	Q9P2M4	TBC14_HUMAN	TBC1 domain family, member 14 isoform a	666						intracellular	Rab GTPase activator activity			ovary(1)|pancreas(1)	2						ATGCAGAGCCGAAACAAGAAG	0.607													11	37					0	0	0.000978	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13339714	13339714	+	RNA	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:13339714G>A	uc003gms.2	+	1		c.4678G>A				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						AGTTACCAAGGAGGGCCTGGA	0.502													3	6					0	0	0.004672	0	0
SLIT2	9353	broad.mit.edu	37	4	20533638	20533638	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:20533638G>A	uc003gpr.1	+	17	1849	c.1645G>A	c.(1645-1647)GAA>AAA	p.E549K	SLIT2_uc003gps.1_Missense_Mutation_p.E541K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	549	LRR 12.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TACCGTGTTGGAAGCCACAGG	0.303													12	44					0	0	0.001855	0	0
STIM2	57620	broad.mit.edu	37	4	27010420	27010420	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:27010420G>A	uc003gsh.3	+	11	1786	c.1570G>A	c.(1570-1572)GAA>AAA	p.E524K	STIM2_uc003gsg.3_Missense_Mutation_p.E516K|STIM2_uc010iex.2_Missense_Mutation_p.E516K|STIM2_uc010iey.2_Missense_Mutation_p.E140K	NM_020860	NP_065911	Q9P246	STIM2_HUMAN	stromal interaction molecule 2	429	Cytoplasmic (Potential).				activation of store-operated calcium channel activity|calcium ion transport|cellular calcium ion homeostasis|negative regulation of calcium ion transport via store-operated calcium channel activity	endoplasmic reticulum membrane|integral to membrane|plasma membrane	calcium channel regulator activity|calcium ion binding|protein binding			central_nervous_system(1)|skin(1)	2		Breast(46;0.0503)				TTGTTTACGAGAACGACTTTT	0.413													19	62					0	0	0.006122	0	0
FAM114A1	92689	broad.mit.edu	37	4	38933112	38933112	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:38933112C>T	uc003gtn.2	+	11	1378	c.1202C>T	c.(1201-1203)ACC>ATC	p.T401I	FAM114A1_uc011byh.1_Missense_Mutation_p.T194I|FAM114A1_uc010ifi.2_Missense_Mutation_p.T59I	NM_138389	NP_612398	Q8IWE2	NXP20_HUMAN	hypothetical protein LOC92689	401						cytoplasm				ovary(1)	1						GAGGATCAAACCGTGGTGTCA	0.448													20	46					0	0	0.001882	0	0
UCHL1	7345	broad.mit.edu	37	4	41262768	41262768	+	Silent	SNP	C	T	T	rs121917767		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:41262768C>T	uc003gvo.2	+	4	375	c.279C>T	c.(277-279)ATC>ATT	p.I93I	UCHL1_uc003gvp.2_Silent_p.I12I|UCHL1_uc003gvq.2_Silent_p.I12I|UCHL1_uc003gvr.2_Silent_p.I12I|UCHL1_uc003gvs.2_Silent_p.I12I	NM_004181	NP_004172	P09936	UCHL1_HUMAN	ubiquitin carboxyl-terminal esterase L1	93			I -> M (in PARK5; impaired enzymatic hydrolase activity; has about a 50% reduction in catalytic activity compared to wild-type protein).		cell death|negative regulation of MAP kinase activity|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus|plasma membrane	alpha-2A adrenergic receptor binding|cysteine-type endopeptidase activity|ligase activity|omega peptidase activity|ubiquitin binding|ubiquitin thiolesterase activity			central_nervous_system(1)|skin(1)	2						GTGGCACAATCGGACTTATTC	0.443													40	108					0	0	0.002222	0	0
DCAF4L1	285429	broad.mit.edu	37	4	41984425	41984425	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:41984425C>T	uc003gwk.2	+	1	713	c.616C>T	c.(616-618)CAG>TAG	p.Q206*		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	206										skin(1)	1						AGGCTTGTCTCAGCAGGTCCT	0.577													45	128					0	0	0.002852	0	0
GABRA2	2555	broad.mit.edu	37	4	46314709	46314709	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:46314709G>A	uc003gxc.3	-	4	953	c.280C>T	c.(280-282)CGA>TGA	p.R94*	GABRA2_uc010igc.2_Nonsense_Mutation_p.R94*|GABRA2_uc011bzc.1_Nonsense_Mutation_p.R39*|GABRA2_uc003gxe.2_Nonsense_Mutation_p.R94*	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	94	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CATTTTTGTCGAAAGAAAACA	0.279													10	31					0	0	0.008291	0	0
LRRC66	339977	broad.mit.edu	37	4	52861191	52861191	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:52861191G>A	uc003gzi.2	-	4	2010	c.1997C>T	c.(1996-1998)CCA>CTA	p.P666L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	666						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						AAAGACTGATGGGCCTGTGTC	0.557													24	73					0	0	0.003330	0	0
LRRC66	339977	broad.mit.edu	37	4	52862289	52862289	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:52862289G>A	uc003gzi.2	-	4	912	c.899C>T	c.(898-900)TCC>TTC	p.S300F		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	300						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GGTTTCCCTGGAAATCCTGCT	0.522													24	70					0	0	0.007291	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68939691	68939691	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:68939691G>A	uc003hdt.1	-	4	368	c.319C>T	c.(319-321)CGA>TGA	p.R107*	LOC550112_uc003hdl.3_Intron	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	107	SEA.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TTGATAAATCGACCGCCTACA	0.249													4	18					0	0	0.003080	0	0
TMPRSS11B	132724	broad.mit.edu	37	4	69097035	69097035	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:69097035G>A	uc003hdw.3	-	7	708	c.572C>T	c.(571-573)TCC>TTC	p.S191F		NM_182502	NP_872308	Q86T26	TM11B_HUMAN	transmembrane protease, serine 11B	191	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						CCCCTCCAGGGAGCTTTTTCC	0.493													28	47					0	0	0.008361	0	0
YTHDC1	91746	broad.mit.edu	37	4	69203412	69203412	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:69203412G>A	uc003hdx.2	-	3	690	c.337C>T	c.(337-339)CGG>TGG	p.R113W	YTHDC1_uc003hdy.2_Missense_Mutation_p.R113W	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	113										upper_aerodigestive_tract(1)|ovary(1)	2						CGAATTTTCCGATCAGCATCT	0.388													19	64					0	0	0.008871	0	0
UGT2B11	10720	broad.mit.edu	37	4	70066197	70066197	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:70066197C>T	uc003heh.2	-	6	1560	c.1551G>A	c.(1549-1551)TGG>TGA	p.W517*	uc003hei.1_RNA	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	517					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TAGCAAACTTCCAGAAACAAA	0.403													25	64					0	0	0.006320	0	0
UGT2B11	10720	broad.mit.edu	37	4	70080096	70080096	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:70080096G>A	uc003heh.2	-	1	354	c.345C>T	c.(343-345)ATC>ATT	p.I115I	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	115					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						ATTCCCACAGGATTTCTTGTT	0.299													11	71					0	0	0.003163	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73149274	73149274	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:73149274G>A	uc003hgk.1	-	22	3234	c.3197C>T	c.(3196-3198)GCT>GTT	p.A1066V		NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1066					collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ATGAGTTTCAGCAGCTTCTAG	0.473													51	93					0	0	0.003610	0	0
ANKRD17	26057	broad.mit.edu	37	4	73957500	73957500	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:73957500G>A	uc003hgp.2	-	29	5962	c.5845C>T	c.(5845-5847)CAT>TAT	p.H1949Y	ANKRD17_uc003hgo.2_Missense_Mutation_p.H1836Y|ANKRD17_uc003hgq.2_Missense_Mutation_p.H1698Y|ANKRD17_uc003hgr.2_Missense_Mutation_p.H1948Y	NM_032217	NP_115593	O75179	ANR17_HUMAN	ankyrin repeat domain protein 17 isoform a	1949					interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			ovary(5)|skin(3)|upper_aerodigestive_tract(1)|lung(1)	10	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TGATTGCTATGGCGAGGCACC	0.507													61	125					0	0	0.003610	0	0
PPEF2	5470	broad.mit.edu	37	4	76785644	76785644	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:76785644T>C	uc003hix.2	-	16	2314	c.1957A>G	c.(1957-1959)AAC>GAC	p.N653D	PPEF2_uc003hiy.2_RNA	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	653	EF-hand 2.				detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TTGGATCGGTTTCGATACAAT	0.328													20	64					0	0	0.002299	0	0
CCDC158	339965	broad.mit.edu	37	4	77290760	77290760	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:77290760C>T	uc003hkb.3	-	10	1319	c.1166G>A	c.(1165-1167)AGG>AAG	p.R389K		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	389	Potential.									skin(3)|ovary(2)|pancreas(1)	6						CTCCTTCTCCCTTTTGTGTAG	0.433													14	56					0	0	0.004007	0	0
HPSE	10855	broad.mit.edu	37	4	84230557	84230557	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:84230557G>A	uc003hoj.3	-	7	1081	c.982C>T	c.(982-984)CAG>TAG	p.Q328*	HPSE_uc010ika.2_Nonsense_Mutation_p.Q270*|HPSE_uc011ccq.1_RNA|HPSE_uc011ccr.1_RNA|HPSE_uc011ccs.1_Nonsense_Mutation_p.Q71*|HPSE_uc011cct.1_Nonsense_Mutation_p.Q328*|HPSE_uc003hok.3_Nonsense_Mutation_p.Q328*	NM_001098540	NP_001092010	Q9Y251	HPSE_HUMAN	heparanase precursor	328					carbohydrate metabolic process|cell adhesion|proteoglycan metabolic process	extracellular region|lysosomal membrane|nucleus	beta-glucuronidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.114)		COAD - Colon adenocarcinoma(81;0.141)	Heparin(DB01109)	ACTATTACCTGGAAAACTTTT	0.289													6	38					0	0	0.001984	0	0
PDHA2	5161	broad.mit.edu	37	4	96761854	96761854	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:96761854G>A	uc003htr.3	+	1	616	c.553G>A	c.(553-555)GAT>AAT	p.D185N		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	185					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	TAAAGGAAACGATGAGATCTG	0.483													23	72					0	0	0.002780	0	0
ADH1A	124	broad.mit.edu	37	4	100203727	100203727	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:100203727C>T	uc003hur.1	-	6	675	c.604G>A	c.(604-606)GGA>AGA	p.G202R	uc003hum.1_Intron|ADH1A_uc011ceg.1_Missense_Mutation_p.G202R|ADH1A_uc010ilf.1_5'UTR	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	202	NAD.				ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	CCGACCCCTCCCAGGCCAAAC	0.458													69	185					0	0	0.003610	0	0
ADH1A	124	broad.mit.edu	37	4	100203746	100203746	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:100203746G>A	uc003hur.1	-	6	656	c.585C>T	c.(583-585)ACC>ACT	p.T195T	uc003hum.1_Intron|ADH1A_uc011ceg.1_Silent_p.T195T|ADH1A_uc010ilf.1_5'UTR	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	195					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding	p.T195T(1)		large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	ACACAGCACAGGTAGAGCCTG	0.458													71	130					0	0	0.003610	0	0
BANK1	55024	broad.mit.edu	37	4	102994868	102994868	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:102994868G>A	uc003hvy.3	+	16	2600	c.2326G>A	c.(2326-2328)GAA>AAA	p.E776K	BANK1_uc003hvx.3_Missense_Mutation_p.E761K|BANK1_uc010ill.2_Missense_Mutation_p.E643K|BANK1_uc003hvz.3_Missense_Mutation_p.E746K	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	776					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		AGTTGAAAAGGAATTTGGTTT	0.328													17	52					0	0	0.007413	0	0
TBCK	93627	broad.mit.edu	37	4	107230030	107230030	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:107230030G>A	uc010ilv.2	-	2	453	c.88C>T	c.(88-90)CCT>TCT	p.P30S	TBCK_uc003hye.2_Missense_Mutation_p.P30S|TBCK_uc003hyc.2_Missense_Mutation_p.P30S|TBCK_uc003hyd.2_5'UTR|TBCK_uc003hyf.2_Missense_Mutation_p.P30S	NM_001163435	NP_001156907	Q8TEA7	TBCK_HUMAN	TBC domain-containing protein kinase-like	30	Protein kinase.					intracellular	Rab GTPase activator activity			large_intestine(2)|upper_aerodigestive_tract(1)|stomach(1)|ovary(1)	5						GGTGTGAGAGGAAGTCCATTG	0.453													23	57					0	0	0.002780	0	0
ANK2	287	broad.mit.edu	37	4	114260454	114260454	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:114260454C>T	uc003ibe.3	+	32	3969	c.3869C>T	c.(3868-3870)TCC>TTC	p.S1290F	ANK2_uc003ibd.3_Missense_Mutation_p.S1281F|ANK2_uc003ibf.3_Missense_Mutation_p.S1290F|ANK2_uc011cgc.1_Missense_Mutation_p.S466F|ANK2_uc003ibg.3_Missense_Mutation_p.S285F|ANK2_uc003ibh.3_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.S1305F	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1257					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GAATGTGTTTCCTTTACAACA	0.373													29	40					0	0	0.003755	0	0
SPRY1	10252	broad.mit.edu	37	4	124323479	124323479	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:124323479C>T	uc003ifa.2	+	2	921	c.733C>T	c.(733-735)CCT>TCT	p.P245S	SPRY1_uc003ifb.2_Missense_Mutation_p.P245S	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	245	Cys-rich.|SPR.				epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						TTCAGATAATCCTTGCTCCTG	0.458													58	116					0	0	0.003610	0	0
FAT4	79633	broad.mit.edu	37	4	126370225	126370225	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:126370225G>A	uc003ifj.3	+	9	8054	c.8054G>A	c.(8053-8055)CGA>CAA	p.R2685Q	FAT4_uc011cgp.1_Missense_Mutation_p.R983Q|FAT4_uc003ifi.1_Missense_Mutation_p.R163Q	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2685	Cadherin 26.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTTTCCCCTCGAAAAATACTT	0.348													31	106					0	0	0.003755	0	0
PCDH18	54510	broad.mit.edu	37	4	138449647	138449647	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:138449647C>T	uc003ihe.3	-	3	3112	c.2725G>A	c.(2725-2727)GGA>AGA	p.G909R	PCDH18_uc003ihf.3_Missense_Mutation_p.G901R|PCDH18_uc011cgz.1_Missense_Mutation_p.G120R|PCDH18_uc003ihg.3_Missense_Mutation_p.G688R|PCDH18_uc011cha.1_Missense_Mutation_p.G89R	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	909	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					GGAATTCTTCCATCTGTGAGA	0.418													55	162					0	0	0.003610	0	0
TBC1D9	23158	broad.mit.edu	37	4	141578297	141578297	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:141578297G>A	uc010ioj.2	-	13	2563	c.2291C>T	c.(2290-2292)CCT>CTT	p.P764L		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	764						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CTCAGGGTAAGGTTCCACATC	0.488													32	72					0	0	0.002096	0	0
NPY2R	4887	broad.mit.edu	37	4	156135760	156135760	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:156135760C>T	uc003ioq.2	+	2	1164	c.669C>T	c.(667-669)TCC>TCT	p.S223S	NPY2R_uc003ior.2_Silent_p.S223S	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	223	Helical; Name=5; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				GTCTTTCTTCCTTGTTGATCT	0.448													44	103					0	0	0.002522	0	0
MARCH1	55016	broad.mit.edu	37	4	164534484	164534484	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:164534484G>A	uc003iqs.1	-	5	1201	c.224C>T	c.(223-225)TCC>TTC	p.S75F	MARCH1_uc003iqr.1_Missense_Mutation_p.S58F	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	75	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GTCCTGAGTGGATGGACAGAC	0.423													29	70					0	0	0.003271	0	0
ADAM29	11086	broad.mit.edu	37	4	175897020	175897020	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:175897020C>T	uc003iuc.2	+	5	1014	c.344C>T	c.(343-345)TCC>TTC	p.S115F	ADAM29_uc003iud.2_Missense_Mutation_p.S115F|ADAM29_uc010irr.2_Missense_Mutation_p.S115F|ADAM29_uc011cki.1_Missense_Mutation_p.S115F	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	115					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		TCCCTGGTTTCCCTCAGTACC	0.443													19	63					0	0	0.002299	0	0
ASB5	140458	broad.mit.edu	37	4	177143536	177143536	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:177143536G>A	uc003iuq.1	-	3	328	c.312C>T	c.(310-312)GTC>GTT	p.V104V	ASB5_uc003iup.1_Silent_p.V51V	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	104	ANK 2.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		GCAATGGGGTGACATGGTCTA	0.388													27	71					0	0	0.001786	0	0
ODZ3	55714	broad.mit.edu	37	4	183635324	183635324	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:183635324G>A	uc003ivd.1	+	12	2343	c.2306G>A	c.(2305-2307)AGA>AAA	p.R769K	ODZ3_uc003ive.1_Missense_Mutation_p.R175K	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	769	EGF-like 8.|Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CCTGGATGGAGAGGAGCAGGC	0.507													19	56					0	0	0.001523	0	0
ING2	3622	broad.mit.edu	37	4	184431571	184431571	+	Silent	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:184431571T>A	uc003ivs.1	+	2	438	c.309T>A	c.(307-309)ATT>ATA	p.I103I	ING2_uc011ckk.1_Silent_p.I63I	NM_001564	NP_001555	Q9H160	ING2_HUMAN	inhibitor of growth family, member 2	103	Potential.				chromatin modification|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of growth|signal transduction|transcription, DNA-dependent	CCAAT-binding factor complex|Sin3 complex	chromatin binding|DNA binding|protein complex binding|zinc ion binding			ovary(1)	1		all_lung(41;5.16e-14)|Lung NSC(41;1.33e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|all_hematologic(60;0.0207)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		AAATACAGATTGTTACACAAA	0.388													48	102					0	0	0.003214	0	0
ENPP6	133121	broad.mit.edu	37	4	185038147	185038147	+	Silent	SNP	C	T	T	rs144414378		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:185038147C>T	uc003iwc.2	-	5	859	c.717G>A	c.(715-717)TCG>TCA	p.S239S		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	239	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TTCCGTGATCCGAGAAAATAA	0.532													23	49					0	0	0.002780	0	0
FAT1	2195	broad.mit.edu	37	4	187535406	187535406	+	Silent	SNP	A	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr4:187535406A>C	uc003izf.2	-	12	9356	c.9168T>G	c.(9166-9168)GCT>GCG	p.A3056A		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	3056	Extracellular (Potential).|Cadherin 28.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AAGTAATTTCAGCGTTAGAGC	0.393										HNSCC(5;0.00058)			29	149					0	0	0.008361	0	0
TERT	7015	broad.mit.edu	37	5	1280441	1280441	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:1280441C>T	uc003jcb.1	-	4	1840	c.1782G>A	c.(1780-1782)AAG>AAA	p.K594K	TERT_uc003jbz.1_5'UTR|TERT_uc003jca.1_Silent_p.K594K|TERT_uc003jcc.1_Silent_p.K594K|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	594					anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GCTGCACCCTCTTCAAGTGCT	0.632									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				7	39					0	0	0.001984	0	0
SDHAP3	728609	broad.mit.edu	37	5	1593261	1593261	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:1593261A>T	uc010itg.1	-	2	276	c.199T>A	c.(199-201)TGT>AGT	p.C67S	SDHAP3_uc011cme.1_RNA					Homo sapiens cDNA clone IMAGE:40127561.												0						CTCAGGGCACATGCCTGACCA	0.537													3	36					0	0	0.000602	0	0
DNAH5	1767	broad.mit.edu	37	5	13769624	13769624	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:13769624C>T	uc003jfd.2	-	57	9748	c.9706G>A	c.(9706-9708)GAT>AAT	p.D3236N	DNAH5_uc003jfc.2_5'Flank	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3236	Stalk (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCGGCTTTATCGTTGGCCACT	0.418									Kartagener_syndrome				38	81					0	0	0.002222	0	0
DNAH5	1767	broad.mit.edu	37	5	13920716	13920716	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:13920716C>T	uc003jfd.2	-	6	713	c.671G>A	c.(670-672)CGA>CAA	p.R224Q	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	224	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCACACTTTCGAAGGTTCAC	0.393									Kartagener_syndrome				22	43					0	0	0.002780	0	0
ANKH	56172	broad.mit.edu	37	5	14749414	14749414	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:14749414C>T	uc003jfm.3	-	6	1020	c.689G>A	c.(688-690)GGA>GAA	p.G230E		NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	230	Cytoplasmic (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						TGTTGCATCTCCCTGTGTTAA	0.408													21	53					0	0	0.002780	0	0
CDH18	1016	broad.mit.edu	37	5	19747341	19747341	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:19747341T>G	uc003jgc.2	-	3	610	c.233A>C	c.(232-234)CAC>CCC	p.H78P	CDH18_uc003jgd.2_Missense_Mutation_p.H78P|CDH18_uc011cnm.1_Missense_Mutation_p.H78P	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	78	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					AGAATTGGAGTGCAGCTGTGA	0.383													19	37					0	0	0.007413	0	0
NPR3	4883	broad.mit.edu	37	5	32738972	32738972	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:32738972G>A	uc003jhv.2	+	3	1113	c.895G>A	c.(895-897)GAT>AAT	p.D299N	NPR3_uc010iuo.2_Missense_Mutation_p.D83N|NPR3_uc011cnz.1_Missense_Mutation_p.D83N|NPR3_uc003jhu.2_Missense_Mutation_p.D299N	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	299	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	TTCCATAGGAGATGGCTCATG	0.458													19	100					0	0	0.008871	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33881255	33881255	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:33881255C>T	uc003jia.1	-	2	621	c.458G>A	c.(457-459)GGG>GAG	p.G153E	ADAMTS12_uc010iuq.1_Missense_Mutation_p.G153E|ADAMTS12_uc003jib.1_Missense_Mutation_p.G153E	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	153					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						GGCTGCCGTCCCAACTCTGGT	0.587										HNSCC(64;0.19)			10	58					0	0	0.000978	0	0
SPEF2	79925	broad.mit.edu	37	5	35792480	35792480	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:35792480G>A	uc003jjo.2	+	31	4597	c.4486G>A	c.(4486-4488)GAT>AAT	p.D1496N	SPEF2_uc003jjp.1_Missense_Mutation_p.D982N|SPEF2_uc003jjr.2_Missense_Mutation_p.D551N	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1496					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CATTCTGATCGATTTGGTGAC	0.358													20	47					0	0	0.001523	0	0
CAPSL	133690	broad.mit.edu	37	5	35910557	35910557	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:35910557C>T	uc003jjt.1	-	3	321	c.226G>A	c.(226-228)GAA>AAA	p.E76K	CAPSL_uc003jju.1_Missense_Mutation_p.E76K	NM_001042625	NP_001036090	Q8WWF8	CAPSL_HUMAN	calcyphosine-like	76	EF-hand 2.					cytoplasm	calcium ion binding			skin(1)	1	all_lung(31;0.000268)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.167)|Colorectal(62;0.202)			TCTTCTTTTTCCATGACCACA	0.338													19	52					0	0	0.008871	0	0
ITGA1	3672	broad.mit.edu	37	5	52214623	52214623	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:52214623C>T	uc003jou.2	+	16	2102	c.2050C>T	c.(2050-2052)CAA>TAA	p.Q684*	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Nonsense_Mutation_p.Q215*	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	684	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				AGTGAATATTCAAAAGAAAAA	0.348													7	43					0	0	0.004482	0	0
CMYA5	202333	broad.mit.edu	37	5	79028741	79028741	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:79028741C>T	uc003kgc.2	+	2	4225	c.4153C>T	c.(4153-4155)CGT>TGT	p.R1385C		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1385						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		TCCTGTAGATCGTCCAGTCTT	0.398													16	24					0	0	0.004990	0	0
GPR98	84059	broad.mit.edu	37	5	89979617	89979617	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:89979617G>A	uc003kju.2	+	28	5975	c.5879G>A	c.(5878-5880)GGA>GAA	p.G1960E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1960	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGTTCTTTGGGAGCTCATATT	0.428													14	29					0	0	0.002450	0	0
ERAP2	64167	broad.mit.edu	37	5	96215612	96215612	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:96215612C>T	uc003kmq.2	+	2	933	c.223C>T	c.(223-225)CCT>TCT	p.P75S	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Missense_Mutation_p.P75S|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Missense_Mutation_p.P69S|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	75	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		TGTGGTCATTCCTCTCCATTA	0.488													7	37					0	0	0.003080	0	0
PAM	5066	broad.mit.edu	37	5	102310099	102310099	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:102310099C>T	uc003knw.2	+	14	1815	c.1442C>T	c.(1441-1443)CCC>CTC	p.P481L	PAM_uc003kns.2_Intron|PAM_uc003knt.2_Missense_Mutation_p.P481L|PAM_uc003knu.2_Missense_Mutation_p.P481L|PAM_uc003knv.2_Missense_Mutation_p.P481L|PAM_uc011cuz.1_Missense_Mutation_p.P384L|PAM_uc003knx.1_Intron|PAM_uc003kny.1_RNA	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	481	Peptidylglycine alpha-hydroxylating monooxygenase (By similarity).|Intragranular (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	TTACAGCAGCCCCCACCTGGT	0.468													19	69					0	0	0.002299	0	0
FAM170A	340069	broad.mit.edu	37	5	118970375	118970375	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:118970375G>A	uc003ksm.2	+	3	1142	c.932G>A	c.(931-933)AGG>AAG	p.R311K	FAM170A_uc003ksl.2_Intron|FAM170A_uc003ksn.2_Missense_Mutation_p.R311K|FAM170A_uc003kso.2_Missense_Mutation_p.R264K	NM_182761	NP_877438	A1A519	F170A_HUMAN	family with sequence similarity 170, member A	311						intracellular	zinc ion binding			skin(1)	1						CTTGGCCTGAGGAGATCCTGG	0.343													17	94					0	0	0.004990	0	0
SNCAIP	9627	broad.mit.edu	37	5	121759225	121759225	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:121759225G>A	uc003ksw.1	+	4	999	c.793G>A	c.(793-795)GAT>AAT	p.D265N	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.D265N|SNCAIP_uc003ksx.1_Missense_Mutation_p.D312N|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Intron|SNCAIP_uc010jcx.1_Missense_Mutation_p.D265N	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	265					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GACATTTAGTGATCCTCATGG	0.473													8	34					0	0	0.003080	0	0
ALDH7A1	501	broad.mit.edu	37	5	125896808	125896808	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:125896808G>A	uc003ktx.2	-	10	1072	c.880C>T	c.(880-882)CTG>TTG	p.L294L	ALDH7A1_uc003ktv.2_5'UTR|ALDH7A1_uc003kty.2_RNA|ALDH7A1_uc011cxa.1_Silent_p.L321L	NM_001182	NP_001173	P49419	AL7A1_HUMAN	aldehyde dehydrogenase 7 family, member A1	294					cellular aldehyde metabolic process|lysine catabolic process|sensory perception of sound	cytosol|mitochondrial matrix|nucleus	aldehyde dehydrogenase (NAD) activity|betaine-aldehyde dehydrogenase activity|L-aminoadipate-semialdehyde dehydrogenase activity			kidney(2)|ovary(1)	3		all_cancers(142;0.24)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.0584)|Kidney(363;0.0934)	Epithelial(69;0.0417)|OV - Ovarian serous cystadenocarcinoma(64;0.068)|all cancers(49;0.109)	NADH(DB00157)|Pyridoxine(DB00165)	AGTTCCAACAGACTTCTCCCT	0.338													27	54					0	0	0.004656	0	0
SLC27A6	28965	broad.mit.edu	37	5	128321002	128321002	+	Missense_Mutation	SNP	C	T	T	rs151090767	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:128321002C>T	uc003kuy.2	+	3	1054	c.658C>T	c.(658-660)CTT>TTT	p.L220F	SLC27A6_uc003kuz.2_Missense_Mutation_p.L220F	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	220					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GTCTACTTGTCTTTACATTTT	0.423													16	50					0	0	0.007413	0	0
SLC22A4	6583	broad.mit.edu	37	5	131662987	131662987	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:131662987C>T	uc003kwq.2	+	5	1007	c.842C>T	c.(841-843)CCC>CTC	p.P281L	SLC22A4_uc010jdq.1_RNA|uc003kwr.3_Intron	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	281	Cytoplasmic (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	CCTGAATCTCCCCGATGGCTG	0.348													6	7					0	0	0.001168	0	0
PCDHA6	56142	broad.mit.edu	37	5	140209591	140209591	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140209591G>A	uc003lho.2	+	1	1942	c.1915G>A	c.(1915-1917)GAA>AAA	p.E639K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc011dab.1_Missense_Mutation_p.E639K	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	639	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTCCTGGACGAAGCGGACTC	0.667													14	64					0	0	0.004990	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235856	140235856	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140235856G>A	uc003lhx.2	+	1	223	c.223G>A	c.(223-225)GAG>AAG	p.E75K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.E75K|PCDHA10_uc011dad.1_Missense_Mutation_p.E75K	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	75	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGACCTTCTGGAGGTAAATCT	0.617													32	192					0	0	0.001786	0	0
PCDHA10	56139	broad.mit.edu	37	5	140236503	140236503	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140236503G>A	uc003lhx.2	+	1	870	c.870G>A	c.(868-870)AGG>AGA	p.R290R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Silent_p.R290R|PCDHA10_uc011dad.1_Silent_p.R290R	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	290	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGATAAGAAGGAAATTTTGGA	0.353													20	45					0	0	0.001523	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237633	140237633	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140237633C>T	uc003lhx.2	+	1	2000	c.2000C>T	c.(1999-2001)TCG>TTG	p.S667L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc011dad.1_Missense_Mutation_p.S667L	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	667	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGCTTGTGTCGCTTGTGGAG	0.667													7	22					0	0	0.001984	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562409	140562409	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140562409G>A	uc003liv.2	+	1	1430	c.275G>A	c.(274-276)CGA>CAA	p.R92Q	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	92	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AAGCTAGATCGAGAGGAGCTA	0.463													18	40					0	0	0.007413	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563764	140563764	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140563764G>A	uc003liv.2	+	1	2785	c.1630G>A	c.(1630-1632)GAG>AAG	p.E544K		NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	544	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTTGAGCAGCGAGGCGCTGGT	0.697													31	20					0	0	0.004289	0	0
PCDHB9	56127	broad.mit.edu	37	5	140567237	140567237	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140567237G>A	uc003liw.1	+	1	345	c.345G>A	c.(343-345)CAG>CAA	p.Q115Q		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	115	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATCCCTTTCAGATTTACCGGG	0.428													5	27					0	0	0.001984	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626826	140626826	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140626826C>T	uc003lje.2	+	1	1680	c.1680C>T	c.(1678-1680)TTC>TTT	p.F560F		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	560	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACTCGCCCTTCGTGCTGTACC	0.721													15	34					0	0	0.007413	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140731709	140731709	+	Silent	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:140731709T>C	uc003ljo.1	+	1	1882	c.1882T>C	c.(1882-1884)TTG>CTG	p.L628L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.L628L	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	628	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCGCGTGCCTTGGGCGACAG	0.697													9	37					0	0	0.001368	0	0
PDGFRB	5159	broad.mit.edu	37	5	149495377	149495377	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:149495377C>T	uc003lro.2	-	23	3739	c.3270G>A	c.(3268-3270)CCG>CCA	p.P1090P	CSF1R_uc003lrm.2_5'Flank|PDGFRB_uc003lrn.1_5'Flank|PDGFRB_uc010jhd.2_Silent_p.P929P	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	1090	Cytoplasmic (Potential).				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity	p.P1090P(1)		central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ACCCCGAATCCGGCAACTGTT	0.682			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								13	31					0	0	0.003163	0	0
PDGFRB	5159	broad.mit.edu	37	5	149501582	149501582	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:149501582C>T	uc003lro.2	-	16	2674	c.2205G>A	c.(2203-2205)GAG>GAA	p.E735E	PDGFRB_uc010jhd.2_Silent_p.E574E	NM_002609	NP_002600	P09619	PGFRB_HUMAN	platelet-derived growth factor receptor beta	735	Cytoplasmic (Potential).|Protein kinase.				aorta morphogenesis|cardiac myofibril assembly|hemopoiesis|metanephric glomerular capillary formation|metanephric glomerular mesangial cell proliferation involved in metanephros development|peptidyl-tyrosine phosphorylation|positive regulation of calcium ion import|positive regulation of chemotaxis|positive regulation of DNA biosynthetic process|positive regulation of ERK1 and ERK2 cascade|positive regulation of MAP kinase activity|positive regulation of metanephric mesenchymal cell migration by platelet-derived growth factor receptor-beta signaling pathway|positive regulation of mitosis|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|protein autophosphorylation|regulation of actin cytoskeleton organization|retina vasculature development in camera-type eye|smooth muscle cell chemotaxis	apical plasma membrane|cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|vascular endothelial growth factor receptor activity			central_nervous_system(4)|lung(4)|breast(3)|stomach(2)|prostate(2)|large_intestine(1)|ovary(1)	17		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		Becaplermin(DB00102)|Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CACCGTCGCTCTCCCCGGTCA	0.567			T	ETV6|TRIP11|HIP1|RAB5EP|H4|NIN|HCMOGT-1|PDE4DIP	MPD|AML|CMML|CML								4	40					0	0	0.000248	0	0
ANXA6	309	broad.mit.edu	37	5	150512090	150512090	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:150512090G>A	uc003ltl.1	-	10	835	c.683C>T	c.(682-684)GCC>GTC	p.A228V	ANXA6_uc011dcp.1_Missense_Mutation_p.A196V|ANXA6_uc003ltm.1_Missense_Mutation_p.A228V|ANXA6_uc003ltn.1_Intron|ANXA6_uc003lto.1_Intron	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	228	Annexin 3.					melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCGGATGCTGGCTTCAATCGG	0.542													11	14					0	0	0.002450	0	0
GRIA1	2890	broad.mit.edu	37	5	153085391	153085391	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:153085391C>T	uc003lva.3	+	11	1952	c.1587C>T	c.(1585-1587)TTC>TTT	p.F529F	GRIA1_uc003luy.3_Silent_p.F529F|GRIA1_uc003luz.3_Silent_p.F434F|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.F449F|GRIA1_uc011dcx.1_Silent_p.F460F|GRIA1_uc011dcy.1_Silent_p.F539F|GRIA1_uc011dcz.1_Silent_p.F539F|GRIA1_uc010jia.1_Silent_p.F509F	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	529	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CGGGTGTCTTCTCCTTCCTTG	0.443													20	122					0	0	0.002299	0	0
ITK	3702	broad.mit.edu	37	5	156675899	156675899	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:156675899C>T	uc003lwo.1	+	16	1755	c.1673C>T	c.(1672-1674)CCG>CTG	p.P558L		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	558	Protein kinase.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GGCAAAATCCCGTATGAAAAC	0.493			T	SYK	peripheral T-cell lymphoma								121	248					0	0	0.003610	0	0
FOXI1	2299	broad.mit.edu	37	5	169535405	169535405	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:169535405T>G	uc003mai.3	+	2	972	c.927T>G	c.(925-927)AGT>AGG	p.S309R	FOXI1_uc003maj.3_Missense_Mutation_p.S214R	NM_012188	NP_036320	Q12951	FOXI1_HUMAN	forkhead box I1 isoform a	309					epidermal cell fate specification|otic placode formation|pattern specification process|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|transcription regulatory region DNA binding			breast(3)|central_nervous_system(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0267)|all_lung(126;0.04)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CTGAGCCCAGTGACAAGACGG	0.612									Pendred_syndrome				18	50					0	0	0.004990	0	0
STK10	6793	broad.mit.edu	37	5	171533651	171533651	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:171533651G>T	uc003mbo.1	-	6	1061	c.761C>A	c.(760-762)CCT>CAT	p.P254H		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	254	Protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAGCGTGGGAGGGTCCGACTT	0.657											OREG0017039	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	36					6.40141e-05	8.50928e-05	0.000978	1	0
UBTD2	92181	broad.mit.edu	37	5	171639076	171639076	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:171639076G>A	uc003mbp.1	-	3	589	c.463C>T	c.(463-465)CGT>TGT	p.R155C		NM_152277	NP_689490	Q8WUN7	UBTD2_HUMAN	dendritic cell-derived ubiquitin-like protein	155	Ubiquitin-like.					cytoplasm					0	Renal(175;0.000159)|Lung NSC(126;0.00976)|all_lung(126;0.0156)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGGCGCAAACGAAGCTGACAT	0.498													31	122					0	0	0.003755	0	0
NSD1	64324	broad.mit.edu	37	5	176638794	176638795	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:176638794_176638795GG>AA	uc003mfr.3	+	5	3532_3533	c.3394_3395GG>AA	c.(3394-3396)GGA>AAA	p.G1132K	NSD1_uc003mft.3_Missense_Mutation_p.G863K|NSD1_uc003mfs.1_Missense_Mutation_p.G1029K|NSD1_uc011dfx.1_Missense_Mutation_p.G780K	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	1132					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TTTTGAAAACGGAAAAGGCCCA	0.406			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			5	35					0	0	0.004672	0	0
RNF130	55819	broad.mit.edu	37	5	179440119	179440119	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr5:179440119C>T	uc003mll.1	-	3	1042	c.635G>A	c.(634-636)TGG>TAG	p.W212*	RNF130_uc003mlm.1_Nonsense_Mutation_p.W212*	NM_018434	NP_060904	Q86XS8	GOLI_HUMAN	ring finger protein 130 precursor	212	Helical; (Potential).				apoptosis	cytoplasm|integral to membrane|nucleus	ubiquitin-protein ligase activity|zinc ion binding			lung(2)|ovary(1)	3	all_cancers(89;5.49e-05)|all_epithelial(37;1.94e-05)|Renal(175;0.000159)|Lung NSC(126;0.00118)|all_lung(126;0.00212)	all_cancers(40;0.0294)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAATATGAGCCATGCTGAAGA	0.438													47	93					0	0	0.003214	0	0
F13A1	2162	broad.mit.edu	37	6	6266812	6266812	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:6266812G>A	uc003mwv.2	-	4	673	c.550C>T	c.(550-552)CTC>TTC	p.L184F	F13A1_uc011dib.1_Missense_Mutation_p.L121F	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	184					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GGATTGAAGAGAATGTACGTG	0.353													60	73					0	0	0.003610	0	0
DSP	1832	broad.mit.edu	37	6	7569487	7569487	+	Silent	SNP	G	A	A	rs35820473	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:7569487G>A	uc003mxp.1	+	12	1767	c.1488G>A	c.(1486-1488)ACG>ACA	p.T496T	DSP_uc003mxq.1_Silent_p.T496T	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	496	Globular 1.|Interacts with plakophilin 1 and junction plakoglobin.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		GGTACGTGACGGGCCCGGGAG	0.557													37	130					0	0	0.004878	0	0
C6orf105	84830	broad.mit.edu	37	6	11768493	11768493	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:11768493G>A	uc003nab.2	-	2	565	c.277C>T	c.(277-279)CCT>TCT	p.P93S	C6orf105_uc011dip.1_Missense_Mutation_p.P111S	NM_032744	NP_116133	Q96IZ2	CF105_HUMAN	hypothetical protein LOC84830 isoform 2	93	Helical; (Potential).					integral to membrane					0	Ovarian(93;0.0848)|Breast(50;0.0871)	all_hematologic(90;0.135)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.193)			GTGGATACAGGAAAAGCCAGA	0.468													42	50					0	0	0.002852	0	0
KIF13A	63971	broad.mit.edu	37	6	17772169	17772169	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:17772169G>A	uc003ncg.3	-	37	4551	c.4446C>T	c.(4444-4446)GCC>GCT	p.A1482A	KIF13A_uc003ncf.2_Silent_p.A1469A|KIF13A_uc003nch.3_Silent_p.A1482A|KIF13A_uc003nci.3_Silent_p.A1469A|KIF13A_uc003nce.1_Silent_p.A68A	NM_022113	NP_071396	Q9H1H9	KI13A_HUMAN	kinesin family member 13A isoform a	1482					cargo loading into vesicle|cell cycle|cytokinesis|endosome to lysosome transport|Golgi to plasma membrane protein transport|melanosome organization|plus-end-directed vesicle transport along microtubule	centrosome|endosome membrane|microtubule|midbody|trans-Golgi network membrane	ATP binding|microtubule motor activity|protein binding			large_intestine(2)|ovary(2)	4	Breast(50;0.0107)|Ovarian(93;0.016)	all_hematologic(90;0.125)	all cancers(50;0.0865)|Epithelial(50;0.0974)			TTGCTTCCAGGGCTATCCTTT	0.468													217	289					0	0	0.003610	0	0
HDGFL1	154150	broad.mit.edu	37	6	22570479	22570479	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:22570479G>A	uc003nds.2	+	1	802	c.675G>A	c.(673-675)CGG>CGA	p.R225R		NM_138574	NP_612641	Q5TGJ6	HDGL1_HUMAN	hepatoma derived growth factor-like 1	225	Glu-rich.										0	Ovarian(93;0.163)					AGGAGCTCCGGGAGGAAGAAG	0.682													14	12					0	0	0.004990	0	0
FAM65B	9750	broad.mit.edu	37	6	24848259	24848259	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:24848259G>A	uc003neo.1	-	12	1247	c.1071C>T	c.(1069-1071)TCC>TCT	p.S357S	FAM65B_uc011djs.1_Silent_p.S386S|FAM65B_uc011dju.1_Silent_p.S391S|FAM65B_uc003nep.2_Silent_p.S357S|FAM65B_uc011djt.1_Silent_p.S357S	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	357					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						TTACAAAGAAGGAGTGGTCTT	0.522													20	56					0	0	0.001882	0	0
BTN2A1	11120	broad.mit.edu	37	6	26460007	26460007	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:26460007C>T	uc003nib.1	+	3	593	c.381C>T	c.(379-381)TTC>TTT	p.F127F	BTN2A1_uc003nic.1_Silent_p.F127F|BTN2A1_uc003nid.1_5'UTR|BTN2A1_uc011dko.1_Silent_p.F66F	NM_007049	NP_008980	Q7KYR7	BT2A1_HUMAN	butyrophilin, subfamily 2, member A1 isoform 1	127	Extracellular (Potential).|Ig-like V-type.				lipid metabolic process	integral to plasma membrane				ovary(1)|skin(1)	2						GCTGTTACTTCCAAGAAGGCA	0.537													25	33					0	0	0.003954	0	0
GPX6	257202	broad.mit.edu	37	6	28472256	28472256	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:28472256G>A	uc011dlj.1	-	6	529	c.479C>T	c.(478-480)TCT>TTT	p.S160F	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	160					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	CAAAAGATCAGAGGTCGGAGG	0.448													33	47					0	0	0.002836	0	0
GPX6	257202	broad.mit.edu	37	6	28474188	28474188	+	Missense_Mutation	SNP	T	G	G			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:28474188T>G	uc011dlj.1	-	4	310	c.260A>C	c.(259-261)GAG>GCG	p.E87A	GPX6_uc010jrg.1_RNA	NM_182701	NP_874360	P59796	GPX6_HUMAN	glutathione peroxidase 6 precursor	87					response to oxidative stress	extracellular region	glutathione peroxidase activity			ovary(3)|pancreas(1)|skin(1)	5					Glutathione(DB00143)	CTTCAGCTCCTCCTGTAGTGC	0.453													17	82					0	0	0.004990	0	0
SCAND3	114821	broad.mit.edu	37	6	28540229	28540229	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:28540229C>T	uc003nlo.2	-	4	4055	c.3437G>A	c.(3436-3438)AGA>AAA	p.R1146K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1146					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						tgtagaaattctgtttttcca	0													31	58					0	0	0.002836	0	0
OR2W1	26692	broad.mit.edu	37	6	29012196	29012196	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:29012196C>T	uc003nlw.2	-	1	757	c.757G>A	c.(757-759)GGA>AGA	p.G253R		NM_030903	NP_112165	Q9Y3N9	OR2W1_HUMAN	olfactory receptor, family 2, subfamily W,	253	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						ATAATAGTTCCATAGAACATA	0.448													18	95					0	0	0.006122	0	0
OR2J3	442186	broad.mit.edu	37	6	29079827	29079827	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:29079827C>T	uc011dll.1	+	1	160	c.160C>T	c.(160-162)CTG>TTG	p.L54L		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGTCATACCTGGACTCCCA	0.438													69	250					0	0	0.003610	0	0
DDR1	780	broad.mit.edu	37	6	30862382	30862383	+	Missense_Mutation	DNP	CC	TT	TT	rs150721017	by1000genomes	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:30862382_30862383CC>TT	uc003nrr.2	+	12	1706_1707	c.1447_1448CC>TT	c.(1447-1449)CCG>TTG	p.P483L	DDR1_uc010jse.2_Missense_Mutation_p.P483L|DDR1_uc003nrq.2_Missense_Mutation_p.P483L|DDR1_uc003nrs.2_Missense_Mutation_p.P483L|DDR1_uc003nrt.2_Missense_Mutation_p.P483L|DDR1_uc011dms.1_Missense_Mutation_p.P501L|DDR1_uc003nru.2_Missense_Mutation_p.P483L|DDR1_uc003nrv.2_Missense_Mutation_p.P483L|DDR1_uc003nrw.1_Missense_Mutation_p.R255C|DDR1_uc003nry.1_RNA|DDR1_uc003nrx.1_RNA|DDR1_uc003nrz.1_5'Flank	NM_013993	NP_054699	Q08345	DDR1_HUMAN	discoidin domain receptor family, member 1	483	PPxY motif.|Cytoplasmic (Potential).|Gly/Pro-rich.				cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular region|integral to plasma membrane	ATP binding|protein binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|central_nervous_system(3)|large_intestine(1)|ovary(1)	9					Imatinib(DB00619)	AGAGCCACCCCCGTACCAGGAG	0.629													50	102					0	0	0.004672	0	0
TNXB	7148	broad.mit.edu	37	6	32053810	32053810	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:32053810G>A	uc003nzl.2	-	7	3067	c.2865C>T	c.(2863-2865)CTC>CTT	p.L955L		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1042					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCTGCTGCAGGAGAGGAGCCT	0.682													79	315					0	0	0.003610	0	0
TAP1	6890	broad.mit.edu	37	6	32814931	32814931	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:32814931C>A	uc003ocg.2	-	10	2289	c.2134G>T	c.(2134-2136)GCG>TCG	p.A712S	PSMB8_uc003ocf.2_5'Flank|TAP1_uc011dqi.1_Missense_Mutation_p.A451S	NM_000593	NP_000584	Q03518	TAP1_HUMAN	transporter 1, ATP-binding cassette, sub-family	712	Cytoplasmic (Potential).|ABC transporter.				antigen processing and presentation of endogenous peptide antigen via MHC class I|cytosol to ER transport|intracellular transport of viral proteins in host cell|positive regulation of T cell mediated cytotoxicity	cytosol|plasma membrane|TAP complex	ADP binding|ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|protein homodimerization activity|TAP1 binding|TAP2 binding|tapasin binding			skin(1)	1						CGGGCCAACGCCACTGCCTGT	0.562													29	95					3.57733e-08	4.78701e-08	0.001786	1	0
HLA-DMA	3108	broad.mit.edu	37	6	32918341	32918341	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:32918341G>A	uc003ocm.2	-	2	414	c.328C>T	c.(328-330)CAG>TAG	p.Q110*	HLA-DMA_uc011dqm.1_Nonsense_Mutation_p.Q110*	NM_006120	NP_006111	Q31604	Q31604_HUMAN	major histocompatibility complex, class II, DM	110						integral to membrane|MHC class II protein complex					0						CCTATTTGCTGGATCATCCAC	0.522													170	170					0	0	0.003610	0	0
COL11A2	1302	broad.mit.edu	37	6	33156871	33156871	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:33156871G>A	uc003ocx.1	-	3	555	c.327C>T	c.(325-327)GTC>GTT	p.V109V	COL11A2_uc003ocy.1_Silent_p.V109V|COL11A2_uc003ocz.1_Silent_p.V109V|COL11A2_uc003oda.2_Silent_p.V109V	NM_080680	NP_542411	P13942	COBA2_HUMAN	collagen, type XI, alpha 2 isoform 1	109	TSP N-terminal.				cartilage development|cell adhesion|collagen fibril organization|sensory perception of sound|soft palate development	collagen type XI	extracellular matrix structural constituent conferring tensile strength|protein binding, bridging			ovary(3)|skin(2)	5						CCAGCTGTCGGACACCCTGGG	0.607													30	121					0	0	0.002445	0	0
RING1	6015	broad.mit.edu	37	6	33178988	33178988	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:33178988G>T	uc003odk.2	+	5	703	c.509G>T	c.(508-510)AGT>ATT	p.S170I	RING1_uc011dqx.1_Missense_Mutation_p.S170I|RING1_uc003odl.2_Missense_Mutation_p.S141I	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	170	Necessary for transcriptional repression (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						ACAACGATGAGTGGGGGGGAA	0.617													160	177					3.98587e-82	5.42421e-82	0.003610	1	0
DAXX	1616	broad.mit.edu	37	6	33286918	33286918	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:33286918C>T	uc003oec.2	-	7	2223	c.2019G>A	c.(2017-2019)TTG>TTA	p.L673L	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Silent_p.L598L|DAXX_uc011dre.1_Silent_p.L685L|DAXX_uc003oed.2_Silent_p.L673L	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	673	Interaction with SPOP.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						CCAAGGAAGCCAAGGGGGAAG	0.542			Mis|F|N		Pancreatic neuroendocrine tumors								96	138					0	0	0.003610	0	0
IP6K3	117283	broad.mit.edu	37	6	33694521	33694521	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:33694521C>T	uc010jvf.2	-	5	1112	c.576G>A	c.(574-576)GAG>GAA	p.E192E	IP6K3_uc003ofb.2_Silent_p.E192E	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	192					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						GCCGCTTGTTCTCTGGGTACT	0.607													57	38					0	0	0.003610	0	0
C6orf81	221481	broad.mit.edu	37	6	35716394	35716394	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:35716394G>A	uc003ola.2	+	6	878	c.851G>A	c.(850-852)CGG>CAG	p.R284Q	C6orf81_uc003olb.1_Missense_Mutation_p.R247Q	NM_145028	NP_659465	Q5T9G4	CF081_HUMAN	hypothetical protein LOC221481	257							binding			ovary(1)	1						TTTGCTGAGCGGCTGAGTGAG	0.537													25	76					0	0	0.003954	0	0
DNAH8	1769	broad.mit.edu	37	6	38851680	38851680	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:38851680G>A	uc003ooe.1	+	54	8114	c.7514G>A	c.(7513-7515)CGA>CAA	p.R2505Q		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTGGATAAGCGAATTGGAAGC	0.363													39	60					0	0	0.006230	0	0
DNAH8	1769	broad.mit.edu	37	6	38980014	38980014	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:38980014G>A	uc003ooe.1	+	88	13344	c.12744G>A	c.(12742-12744)ATG>ATA	p.M4248I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGATAAAGATGGGCCATCTTA	0.338													25	35					0	0	0.005443	0	0
TJAP1	93643	broad.mit.edu	37	6	43472767	43472767	+	Missense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:43472767C>A	uc003ovd.2	+	11	1224	c.848C>A	c.(847-849)CCC>CAC	p.P283H	TJAP1_uc003ovf.2_Missense_Mutation_p.P273H|TJAP1_uc003ove.2_Missense_Mutation_p.P273H|TJAP1_uc003ovc.2_Missense_Mutation_p.P273H|TJAP1_uc010jyp.2_Missense_Mutation_p.P242H|TJAP1_uc011dvh.1_Missense_Mutation_p.P273H|TJAP1_uc003ovg.2_Missense_Mutation_p.P149H|TJAP1_uc011dvi.1_Missense_Mutation_p.P283H|TJAP1_uc011dvj.1_Missense_Mutation_p.P83H|TJAP1_uc003ovi.2_Missense_Mutation_p.P149H	NM_001146016	NP_001139488	Q5JTD0	TJAP1_HUMAN	tight junction associated protein 1 isoform a	283	Pro-rich.					Golgi apparatus|tight junction	protein binding				0	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0122)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CCTGGCAGCCCCACCCCACAA	0.662													33	118					2.80507e-11	3.77039e-11	0.002445	1	0
C6orf138	442213	broad.mit.edu	37	6	47847147	47847147	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:47847147G>A	uc011dwm.1	-	3	1467	c.1382C>T	c.(1381-1383)TCC>TTC	p.S461F	C6orf138_uc011dwn.1_Missense_Mutation_p.S225F	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	478	Helical; (Potential).					integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						CCCCATGAAGGAGAAGGAGGC	0.413													14	26					0	0	0.001855	0	0
PGK2	5232	broad.mit.edu	37	6	49753703	49753703	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:49753703G>A	uc003ozu.2	-	1	1305	c.1198C>T	c.(1198-1200)CTA>TTA	p.L400L		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	400					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AGAAGCTCTAGACTGGCACCG	0.478													43	96					0	0	0.002522	0	0
EFHC1	114327	broad.mit.edu	37	6	52303138	52303138	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:52303138C>T	uc003pap.3	+	3	537	c.322C>T	c.(322-324)CCT>TCT	p.P108S	EFHC1_uc011dwv.1_Missense_Mutation_p.P17S|EFHC1_uc011dww.1_Missense_Mutation_p.P89S	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	108	DM10 1.					axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					AGAAGATGTTCCTATGTCAAC	0.358													9	21					0	0	0.004482	0	0
KCNQ5	56479	broad.mit.edu	37	6	73902301	73902301	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:73902301C>T	uc003pgk.2	+	13	2070	c.1723C>T	c.(1723-1725)CTT>TTT	p.L575F	KCNQ5_uc011dyh.1_Missense_Mutation_p.L594F|KCNQ5_uc011dyi.1_Missense_Mutation_p.L585F|KCNQ5_uc010kat.2_Missense_Mutation_p.L566F|KCNQ5_uc011dyj.1_Missense_Mutation_p.L465F|KCNQ5_uc011dyk.1_Missense_Mutation_p.L325F	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	575					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGATCAAATTCTTGGAAAAGG	0.418													36	65					0	0	0.005524	0	0
DDX43	55510	broad.mit.edu	37	6	74115538	74115538	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:74115538C>T	uc003pgw.2	+	6	1131	c.787C>T	c.(787-789)CAA>TAA	p.Q263*	DDX43_uc011dyn.1_RNA	NM_018665	NP_061135	Q9NXZ2	DDX43_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	263	Q motif.					intracellular	ATP binding|ATP-dependent RNA helicase activity|RNA binding			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4						GGCAGGTTTTCAAAAGCCAAC	0.388													18	22					0	0	0.001523	0	0
COL12A1	1303	broad.mit.edu	37	6	75844525	75844525	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:75844525T>C	uc003phs.2	-	32	5607	c.5441A>G	c.(5440-5442)AAG>AGG	p.K1814R	COL12A1_uc003pht.2_Missense_Mutation_p.K650R	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1814	Fibronectin type-III 13.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AGTGTCTGGCTTCAGTTTCTG	0.493													67	61					0	0	0.003610	0	0
FILIP1	27145	broad.mit.edu	37	6	76022244	76022244	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:76022244C>T	uc003pia.2	-	5	3677	c.3304G>A	c.(3304-3306)GAG>AAG	p.E1102K	FILIP1_uc003phy.1_Missense_Mutation_p.E1102K|FILIP1_uc003phz.2_Missense_Mutation_p.E1003K|FILIP1_uc010kbe.2_Missense_Mutation_p.E1105K|FILIP1_uc003pib.1_Missense_Mutation_p.E854K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	1102				E -> G (in Ref. 3; CAD89912).						skin(3)|ovary(1)	4						GTGGAAACCTCCTTTTCGGCT	0.532													88	102					0	0	0.003610	0	0
FILIP1	27145	broad.mit.edu	37	6	76063410	76063410	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:76063410C>T	uc003pia.2	-	4	847	c.474G>A	c.(472-474)CAG>CAA	p.Q158Q	FILIP1_uc003phy.1_Silent_p.Q158Q|FILIP1_uc003phz.2_Silent_p.Q59Q|FILIP1_uc010kbe.2_Silent_p.Q161Q	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	158										skin(3)|ovary(1)	4						AGGTTTCTTTCTGTTTTTCCT	0.438													55	60					0	0	0.003610	0	0
KIAA1009	22832	broad.mit.edu	37	6	84862679	84862679	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:84862679G>A	uc010kbp.2	-	23	3311	c.3214C>T	c.(3214-3216)CAG>TAG	p.Q1072*	KIAA1009_uc003pkj.3_Nonsense_Mutation_p.Q996*|KIAA1009_uc003pki.3_Nonsense_Mutation_p.Q458*	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	1072	Potential.				cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		TCTATAGACTGAAAATCTTCA	0.363													19	107					0	0	0.008871	0	0
CNR1	1268	broad.mit.edu	37	6	88854075	88854075	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:88854075G>A	uc011dzq.1	-	2	4482	c.919C>T	c.(919-921)CGC>TGC	p.R307C	CNR1_uc010kbz.2_Missense_Mutation_p.R307C|CNR1_uc011dzr.1_Missense_Mutation_p.R307C|CNR1_uc011dzs.1_Missense_Mutation_p.R307C|CNR1_uc003pmq.3_Missense_Mutation_p.R307C|CNR1_uc011dzt.1_Missense_Mutation_p.R307C|CNR1_uc010kca.2_Missense_Mutation_p.R274C	NM_001160260	NP_001153732	P21554	CNR1_HUMAN	cannabinoid receptor 1 isoform a	307	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	cannabinoid receptor activity|protein binding			skin(2)	2		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.15)	Marinol(DB00470)|Nabilone(DB00486)|Rimonabant(DB06155)	TGAATCATGCGGACGGCGTGG	0.547													26	31					0	0	0.005443	0	0
GPR63	81491	broad.mit.edu	37	6	97247595	97247595	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:97247595C>T	uc010kcl.2	-	3	491	c.13G>A	c.(13-15)GCA>ACA	p.A5T	GPR63_uc003pou.2_Missense_Mutation_p.A5T	NM_001143957	NP_001137429	Q9BZJ6	GPR63_HUMAN	G protein-coupled receptor 63	5	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;6.89e-05)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.0618)|Colorectal(196;0.0721)		BRCA - Breast invasive adenocarcinoma(108;0.0912)		GTCAACACTGCCGAGAAGACC	0.463													23	41					0	0	0.002780	0	0
GPRC6A	222545	broad.mit.edu	37	6	117150041	117150041	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:117150041C>T	uc003pxj.1	-	1	158	c.136G>A	c.(136-138)GAA>AAA	p.E46K	GPRC6A_uc003pxk.1_Missense_Mutation_p.E46K|GPRC6A_uc003pxl.1_Missense_Mutation_p.E46K	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	46	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		AACATTTTTTCATGAATAGCA	0.433													26	28					0	0	0.007291	0	0
CLVS2	134829	broad.mit.edu	37	6	123369856	123369856	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:123369856G>A	uc003pzi.1	+	4	1523	c.654G>A	c.(652-654)CTG>CTA	p.L218L		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	218	CRAL-TRIO.				lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GGCCTTTCCTGAAGGAGAAAA	0.388													64	86					0	0	0.003610	0	0
MAP7	9053	broad.mit.edu	37	6	136686891	136686891	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:136686891C>T	uc003qgz.2	-	10	1501	c.1255G>A	c.(1255-1257)GAA>AAA	p.E419K	MAP7_uc011edf.1_Missense_Mutation_p.E404K|MAP7_uc011edg.1_Missense_Mutation_p.E449K|MAP7_uc010kgu.2_Missense_Mutation_p.E441K|MAP7_uc011edh.1_Missense_Mutation_p.E404K|MAP7_uc010kgv.2_Missense_Mutation_p.E441K|MAP7_uc010kgs.2_Missense_Mutation_p.E273K|MAP7_uc011edi.1_Missense_Mutation_p.E273K|MAP7_uc010kgq.1_Missense_Mutation_p.E325K|MAP7_uc003qha.1_Missense_Mutation_p.E382K|MAP7_uc010kgr.2_Missense_Mutation_p.E273K	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	419	Pro-rich.				establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		ACTTCTGGTTCAGCAGGTGTC	0.478													28	36					0	0	0.007291	0	0
NMBR	4829	broad.mit.edu	37	6	142399800	142399800	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:142399800G>A	uc003qiu.2	-	2	804	c.663C>T	c.(661-663)TTC>TTT	p.F221F		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	221	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		GTGGTATGAGGAAATAGACCA	0.353													28	47					0	0	0.004656	0	0
MYCT1	80177	broad.mit.edu	37	6	153042931	153042931	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:153042931G>A	uc003qpd.3	+	2	259	c.251G>A	c.(250-252)GGA>GAA	p.G84E	MYCT1_uc010kjc.1_Missense_Mutation_p.G84E|MYCT1_uc003qpc.3_Missense_Mutation_p.G84E	NM_025107	NP_079383	Q8N699	MYCT1_HUMAN	myc target 1	84						nucleus				ovary(1)	1		Ovarian(120;0.0654)		OV - Ovarian serous cystadenocarcinoma(155;1.33e-10)|BRCA - Breast invasive adenocarcinoma(81;0.143)		GTACTTGGAGGATTTATTTGG	0.418													28	53					0	0	0.005443	0	0
SLC22A3	6581	broad.mit.edu	37	6	160858233	160858233	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:160858233C>T	uc003qti.2	+	7	1305	c.1278C>T	c.(1276-1278)TTC>TTT	p.F426F	SLC22A3_uc011efx.1_RNA	NM_021977	NP_068812	O75751	S22A3_HUMAN	solute carrier family 22 member 3	426						integral to plasma membrane|membrane fraction	protein binding|quaternary ammonium group transmembrane transporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(66;0.00028)|Ovarian(120;0.0308)|Prostate(117;0.218)		OV - Ovarian serous cystadenocarcinoma(65;9.47e-17)|BRCA - Breast invasive adenocarcinoma(81;9.75e-06)		TCACTGCGTTCTTACCAGAAG	0.488													36	60					0	0	0.003271	0	0
TTLL2	83887	broad.mit.edu	37	6	167754237	167754237	+	Missense_Mutation	SNP	A	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr6:167754237A>T	uc003qvs.1	+	3	937	c.849A>T	c.(847-849)GAA>GAT	p.E283D	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	283	TTL.				protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TTGCCACGGAAAAGTTTGACC	0.403													67	102					0	0	0.003610	0	0
MAFK	7975	broad.mit.edu	37	7	1579891	1579891	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:1579891C>T	uc003skr.2	+	3	562	c.351C>T	c.(349-351)TTC>TTT	p.F117F	MAFK_uc003sks.1_RNA	NM_002360	NP_002351	O60675	MAFK_HUMAN	v-maf musculoaponeurotic fibrosarcoma oncogene	117					blood coagulation	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.75e-15)		TGCAGACCTTCGCGCGCACCG	0.677													8	15					0	0	0.004482	0	0
ETV1	2115	broad.mit.edu	37	7	13975376	13975376	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:13975376G>A	uc011jxq.1	-	8	1250	c.511C>T	c.(511-513)CCA>TCA	p.P171S	ETV1_uc011jxn.1_Missense_Mutation_p.P131S|ETV1_uc011jxo.1_Intron|ETV1_uc011jxp.1_Missense_Mutation_p.P113S|ETV1_uc003ssw.3_Missense_Mutation_p.P171S|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Missense_Mutation_p.P153S|ETV1_uc011jxs.1_Missense_Mutation_p.P153S|ETV1_uc010ktv.2_Missense_Mutation_p.P40S	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	171					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						GACTGCGATGGAGGGAGGTGA	0.512			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								78	225					0	0	0.003610	0	0
HDAC9	9734	broad.mit.edu	37	7	18674361	18674361	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:18674361C>T	uc003suh.2	+	7	940	c.899C>T	c.(898-900)GCC>GTC	p.A300V	HDAC9_uc003sue.2_Missense_Mutation_p.A300V|HDAC9_uc011jyd.1_Missense_Mutation_p.A300V|HDAC9_uc003sui.2_Missense_Mutation_p.A303V|HDAC9_uc003suj.2_Missense_Mutation_p.A259V|HDAC9_uc011jya.1_Missense_Mutation_p.A297V|HDAC9_uc003sua.1_Missense_Mutation_p.A278V|HDAC9_uc011jyb.1_Missense_Mutation_p.A256V|HDAC9_uc003sud.1_Missense_Mutation_p.A300V|HDAC9_uc011jyc.1_Missense_Mutation_p.A259V|HDAC9_uc003suf.1_Missense_Mutation_p.A331V|HDAC9_uc010kud.1_Missense_Mutation_p.A303V|HDAC9_uc011jye.1_Missense_Mutation_p.A272V|HDAC9_uc011jyf.1_Missense_Mutation_p.A223V|HDAC9_uc010kue.1_Missense_Mutation_p.A43V	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	300	Interaction with MAPK10 (By similarity).				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ACCCCTCATGCCGAGGTAAGA	0.408													6	6					0	0	0.004482	0	0
DNAH11	8701	broad.mit.edu	37	7	21723441	21723441	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:21723441C>T	uc003svc.2	+	33	5552	c.5521C>T	c.(5521-5523)CGT>TGT	p.R1841C		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1841	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						GTCTCAACTTCGTCACCGATG	0.438									Kartagener_syndrome				92	231					0	0	0.003610	0	0
GHRHR	2692	broad.mit.edu	37	7	31008693	31008693	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:31008693G>A	uc003tbx.2	+	3	224	c.176G>A	c.(175-177)TGG>TAG	p.W59*	GHRHR_uc003tbw.1_Nonsense_Mutation_p.W59*|GHRHR_uc003tby.2_5'Flank|GHRHR_uc003tbz.2_5'Flank	NM_000823	NP_000814	Q02643	GHRHR_HUMAN	growth hormone releasing hormone receptor	59	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of cell proliferation|positive regulation of growth hormone secretion|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of multicellular organism growth|response to estrogen stimulus|response to glucocorticoid stimulus	cell surface|integral to membrane|nuclear inner membrane|nuclear matrix|nuclear outer membrane|plasma membrane|stored secretory granule	growth factor binding|growth hormone-releasing hormone receptor activity|peptide hormone binding			ovary(2)|lung(1)|breast(1)|large_intestine(1)	5					Sermorelin(DB00010)	CCTGCGACCTGGGATGGGCTG	0.622													5	11					0	0	0.000602	0	0
PDE1C	5137	broad.mit.edu	37	7	31862772	31862772	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:31862772G>A	uc003tcm.1	-	14	1966	c.1497C>T	c.(1495-1497)ATC>ATT	p.I499I	PDE1C_uc003tcn.1_Silent_p.I499I|PDE1C_uc003tco.1_Silent_p.I559I|PDE1C_uc003tcr.2_Silent_p.I499I|PDE1C_uc003tcs.2_Silent_p.I499I	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	499	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			AGTCAACGGAGATGACAGAAT	0.488													40	96					0	0	0.005524	0	0
SEPT7	989	broad.mit.edu	37	7	35930362	35930362	+	Silent	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:35930362T>C	uc010kxc.2	+	10	1150	c.957T>C	c.(955-957)TAT>TAC	p.Y319Y	SEPT7_uc011kat.1_Silent_p.Y318Y|SEPT7_uc011kau.1_Silent_p.Y283Y|SEPT7_uc011kav.1_Silent_p.Y266Y|SEPT7_uc003tey.2_Silent_p.Y167Y	NM_001788	NP_001779	Q16181	SEPT7_HUMAN	cell division cycle 10 isoform 1	319					cilium morphogenesis|cytokinesis|mitosis|protein heterooligomerization|regulation of embryonic cell shape	cilium axoneme|cleavage furrow|condensed chromosome kinetochore|midbody|nucleus|septin complex|spindle|stress fiber	GTP binding|protein binding|structural molecule activity				0						CTGTGACTTATAATGGAGTTG	0.323													3	26					0	0	0.004672	0	0
TXNDC3	51314	broad.mit.edu	37	7	37936583	37936583	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:37936583C>T	uc003tfn.2	+	17	2028	c.1656C>T	c.(1654-1656)ATC>ATT	p.I552I		NM_016616	NP_057700	Q8N427	TXND3_HUMAN	thioredoxin domain containing 3	552	NDK 3.				cell differentiation|cell redox homeostasis|CTP biosynthetic process|GTP biosynthetic process|multicellular organismal development|spermatogenesis|UTP biosynthetic process	cytoplasm|microtubule cytoskeleton	ATP binding|nucleoside diphosphate kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CTGACTCCATCCGAGCCCAGT	0.438									Kartagener_syndrome				23	65					0	0	0.001882	0	0
INHBA	3624	broad.mit.edu	37	7	41730115	41730115	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:41730115G>A	uc003thq.2	-	2	649	c.414C>T	c.(412-414)TTC>TTT	p.F138F	INHBA_uc003thr.2_Silent_p.F138F	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	138					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						TGGAAATCTCGAAGTGCAGCG	0.483										TSP Lung(11;0.080)			7	37					0	0	0.003080	0	0
ABCA13	154664	broad.mit.edu	37	7	48619965	48619965	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:48619965C>T	uc003toq.2	+	56	14525	c.14500C>T	c.(14500-14502)CCT>TCT	p.P4834S	ABCA13_uc010kys.1_Missense_Mutation_p.P1909S|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.P564S	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4834	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GCAGTGCATCCCTGAGGTAAA	0.532													8	9					0	0	0.006214	0	0
ZNF735	730291	broad.mit.edu	37	7	63680610	63680610	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:63680610C>T	uc011kdn.1	+	4	1181	c.1181C>T	c.(1180-1182)TCA>TTA	p.S394L		NM_001159524	NP_001152996	P0CB33	ZN735_HUMAN	zinc finger protein 735	394	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						AAGTGGCATTCAAGTCTTGCT	0.358													4	12					0	0	0.000602	0	0
WBSCR28	135886	broad.mit.edu	37	7	73279529	73279529	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:73279529G>A	uc003tzk.2	+	2	315	c.279G>A	c.(277-279)CAG>CAA	p.Q93Q	RFC2_uc011kfa.1_Intron|WBSCR28_uc003tzl.2_5'UTR	NM_182504	NP_872310	Q6UE05	WBS28_HUMAN	hypothetical protein LOC135886	93						integral to membrane				breast(1)	1		Lung NSC(55;0.159)				TGGTGCTACAGGGACCCAGGC	0.687													24	40					0	0	0.002780	0	0
CCDC146	57639	broad.mit.edu	37	7	76924064	76924064	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:76924064G>A	uc003uga.2	+	19	2876	c.2749G>A	c.(2749-2751)GCA>ACA	p.A917T	CCDC146_uc010ldp.2_Missense_Mutation_p.A631T|CCDC146_uc003ugc.2_Missense_Mutation_p.A254T	NM_020879	NP_065930	Q8IYE0	CC146_HUMAN	coiled-coil domain containing 146	917										ovary(1)|central_nervous_system(1)	2		all_cancers(73;0.128)|all_lung(88;0.0986)|all_epithelial(88;0.163)|Myeloproliferative disorder(862;0.205)				CATCCCAGAAGCAGATGCCAC	0.468													12	51					0	0	0.001855	0	0
SEMA3C	10512	broad.mit.edu	37	7	80427444	80427444	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:80427444G>A	uc003uhj.2	-	11	1657	c.1095C>T	c.(1093-1095)TCC>TCT	p.S365S	SEMA3C_uc011kgw.1_Silent_p.S383S|SEMA3C_uc011kgx.1_Silent_p.S217S	NM_006379	NP_006370	Q99985	SEM3C_HUMAN	semaphorin 3C precursor	365	Sema.				immune response|response to drug	membrane	receptor activity			ovary(1)	1						TGCCCTGATAGGAAATCAGCT	0.398													12	45					0	0	0.001855	0	0
PCLO	27445	broad.mit.edu	37	7	82784281	82784281	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:82784281C>T	uc003uhx.2	-	2	1965	c.1676G>A	c.(1675-1677)AGC>AAC	p.S559N	PCLO_uc003uhv.2_Missense_Mutation_p.S559N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	505	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCCTGTTTGGCTTACTGGTTT	0.517													149	341					0	0	0.003610	0	0
AKAP9	10142	broad.mit.edu	37	7	91722539	91722539	+	Nonsense_Mutation	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:91722539G>T	uc003ulg.2	+	39	9712	c.9487G>T	c.(9487-9489)GAA>TAA	p.E3163*	AKAP9_uc003ulf.2_Nonsense_Mutation_p.E3155*|AKAP9_uc003uli.2_Nonsense_Mutation_p.E2786*|AKAP9_uc003ulj.2_Nonsense_Mutation_p.E933*|AKAP9_uc003ull.2_Nonsense_Mutation_p.E59*	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	3167	Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGTGGTTGCTGAACTGAAGAG	0.463			T	BRAF	papillary thyroid								27	55					1.2476e-16	1.68826e-16	0.006320	1	0
SAMD9	54809	broad.mit.edu	37	7	92731662	92731663	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:92731662_92731663AG>GA	uc003umf.2	-	3	4004_4005	c.3748_3749CT>TC	c.(3748-3750)CTC>TCC	p.L1250S	SAMD9_uc003umg.2_Missense_Mutation_p.L1250S	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1250						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ATAGTTTTTGAGGGCTAATTTA	0.277													23	75					0	0	0.004672	0	0
TECPR1	25851	broad.mit.edu	37	7	97862948	97862948	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:97862948G>A	uc003upg.2	-	11	1662	c.1457C>T	c.(1456-1458)CCC>CTC	p.P486L	TECPR1_uc003uph.1_Missense_Mutation_p.P416L	NM_015395	NP_056210	Q7Z6L1	TCPR1_HUMAN	tectonin beta-propeller repeat containing 1	486						integral to membrane	protein binding			pancreas(1)	1						ATTGGTCCAGGGCAGCTCGGC	0.682													27	47					0	0	0.007291	0	0
TRRAP	8295	broad.mit.edu	37	7	98509802	98509802	+	Missense_Mutation	SNP	C	T	T	rs147405090		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:98509802C>T	uc003upp.2	+	18	2374	c.2165C>T	c.(2164-2166)TCC>TTC	p.S722F	TRRAP_uc011kis.1_Missense_Mutation_p.S722F|TRRAP_uc003upr.2_Missense_Mutation_p.S414F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	722					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity	p.S722F(10)		ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGCTCTGTCTCCCTCTTTGCA	0.413													39	84					0	0	0.007835	0	0
C7orf61	402573	broad.mit.edu	37	7	100054486	100054486	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:100054486G>A	uc003uuz.1	-	3	756	c.510C>T	c.(508-510)CGC>CGT	p.R170R		NM_001004323	NP_001004323	Q8IZ16	CG061_HUMAN	hypothetical protein LOC402573	170											0						GGTACAGCCGGCGCAGGTGTT	0.632													11	17					0	0	0.000978	0	0
ZAN	7455	broad.mit.edu	37	7	100333342	100333342	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:100333342G>A	uc003uwj.2	+	3	219	c.54_splice	c.e3-1	p.R18_splice	ZAN_uc003uwk.2_Splice_Site_p.R18_splice|ZAN_uc003uwl.2_Splice_Site|ZAN_uc010lhh.2_Splice_Site|ZAN_uc010lhi.2_Splice_Site	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3						binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CGACCCCCAAGGAAAGAGAAG	0.468													8	14					0	0	0.004482	0	0
SLC12A9	56996	broad.mit.edu	37	7	100458768	100458768	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:100458768C>T	uc003uwp.2	+	10	1369	c.1227C>T	c.(1225-1227)CTC>CTT	p.L409L	SLC12A9_uc003uwq.2_Silent_p.L320L|SLC12A9_uc011kki.1_5'UTR|SLC12A9_uc003uwr.2_Silent_p.L145L|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_Silent_p.L145L|SLC12A9_uc003uwv.2_5'UTR	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	409	Helical; (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					AGCTGGTGCTCCTGGCTGGGA	0.597													43	105					0	0	0.002222	0	0
MUC17	140453	broad.mit.edu	37	7	100685611	100685611	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:100685611C>T	uc003uxp.1	+	3	10967	c.10914C>T	c.(10912-10914)ACC>ACT	p.T3638T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3638	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|58.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTCCATTAACCATTATGCCTG	0.488													26	104					0	0	0.005443	0	0
MUC17	140453	broad.mit.edu	37	7	100685825	100685825	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:100685825G>A	uc003uxp.1	+	3	11181	c.11128G>A	c.(11128-11130)GAG>AAG	p.E3710K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3710	Extracellular (Potential).|59.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GACCAGCTCTGAGGGTAGCAC	0.507													59	137					0	0	0.003610	0	0
CDHR3	222256	broad.mit.edu	37	7	105662830	105662830	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:105662830G>A	uc003vdl.3	+	14	2120	c.2012G>A	c.(2011-2013)GGA>GAA	p.G671E	CDHR3_uc003vdk.2_Intron|CDHR3_uc003vdm.3_Missense_Mutation_p.G658E|CDHR3_uc011klt.1_Missense_Mutation_p.G583E|CDHR3_uc003vdn.2_Intron	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	671	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GTTGAGACAGGAACAGTGACA	0.488													56	130					0	0	0.003610	0	0
CDHR3	222256	broad.mit.edu	37	7	105672847	105672847	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:105672847G>A	uc003vdl.3	+	19	2470	c.2362G>A	c.(2362-2364)GAA>AAA	p.E788K	CDHR3_uc003vdk.2_3'UTR|CDHR3_uc003vdm.3_Missense_Mutation_p.E775K|CDHR3_uc011klt.1_Missense_Mutation_p.E700K|CDHR3_uc003vdn.2_3'UTR	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	788	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						AGTGACCGGGGAAACATATGA	0.453													3	19					0	0	0.004672	0	0
KCND2	3751	broad.mit.edu	37	7	119915400	119915400	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:119915400G>A	uc003vjj.1	+	1	1679	c.714G>A	c.(712-714)ATG>ATA	p.M238I		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	238	Helical; Name=Segment S2; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					CCTGCGTCATGATCTTCACAG	0.542													26	54					0	0	0.005443	0	0
ING3	54556	broad.mit.edu	37	7	120610780	120610780	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:120610780C>T	uc003vjn.2	+	10	1081	c.947C>T	c.(946-948)TCC>TTC	p.S316F	ING3_uc003vjo.2_Missense_Mutation_p.S90F|ING3_uc003vjp.2_Missense_Mutation_p.S316F|ING3_uc011kns.1_Missense_Mutation_p.S301F	NM_019071	NP_061944	Q9NXR8	ING3_HUMAN	inhibitor of growth family, member 3 isoform 1	316	Poly-Ser.				histone H2A acetylation|histone H4 acetylation|positive regulation of apoptosis|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|Piccolo NuA4 histone acetyltransferase complex	zinc ion binding			ovary(1)	1	all_neural(327;0.117)					TCATCATCTTCCTCCTCCTCT	0.363													9	44					0	0	0.008291	0	0
PTPRZ1	5803	broad.mit.edu	37	7	121651577	121651577	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:121651577C>T	uc003vjy.2	+	12	2872	c.2477C>T	c.(2476-2478)TCC>TTC	p.S826F	PTPRZ1_uc003vjz.2_Intron|PTPRZ1_uc011knt.1_Intron	NM_002851	NP_002842	P23471	PTPRZ_HUMAN	protein tyrosine phosphatase, receptor-type,	826	Extracellular (Potential).				central nervous system development	integral to plasma membrane	protein binding|protein tyrosine/threonine phosphatase activity|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|large_intestine(2)|lung(2)|central_nervous_system(1)|kidney(1)	9						TCCTCTGCTTCCTTCAGTAGT	0.458													69	173					0	0	0.003610	0	0
SLC13A1	6561	broad.mit.edu	37	7	122768996	122768996	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:122768996G>A	uc003vkm.2	-	10	1061	c.1036C>T	c.(1036-1038)CAA>TAA	p.Q346*	SLC13A1_uc010lks.2_Nonsense_Mutation_p.Q222*	NM_022444	NP_071889	Q9BZW2	S13A1_HUMAN	solute carrier family 13 (sodium/sulfate	346						integral to membrane|plasma membrane	sodium:sulfate symporter activity			ovary(2)	2					Succinic acid(DB00139)	ACAATTTCTTGATACCTGTGG	0.418													5	15					0	0	0.000602	0	0
SPAM1	6677	broad.mit.edu	37	7	123594436	123594436	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:123594436C>T	uc003vld.2	+	4	1214	c.812C>T	c.(811-813)CCT>CTT	p.P271L	SPAM1_uc003vle.2_Missense_Mutation_p.P271L|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.P271L|SPAM1_uc010lku.2_Missense_Mutation_p.P271L	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	271					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	CAGCAGTCTCCTGTAGCTGCT	0.418													42	79					0	0	0.002522	0	0
PLXNA4	91584	broad.mit.edu	37	7	131866252	131866252	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:131866252G>A	uc003vra.3	-	18	3609	c.3380C>T	c.(3379-3381)TCC>TTC	p.S1127F		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1127	Extracellular (Potential).|IPT/TIG 3.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GATGAGCAGGGACTGGACGTT	0.602													46	105					0	0	0.003610	0	0
HIPK2	28996	broad.mit.edu	37	7	139415944	139415944	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:139415944G>A	uc003vvf.3	-	2	1064	c.890C>T	c.(889-891)CCC>CTC	p.P297L	HIPK2_uc003vvd.3_Missense_Mutation_p.P297L	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	297	Protein kinase.|Interaction with DAXX.				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					GTATTTGAGGGGCAAGGGGCT	0.483													40	83					0	0	0.007835	0	0
WEE2	494551	broad.mit.edu	37	7	141424038	141424038	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:141424038G>A	uc003vwn.2	+	8	1590	c.1184G>A	c.(1183-1185)GGA>GAA	p.G395E	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	395	Protein kinase.				egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					GTGGAAGAAGGAGATAGTCGC	0.368													24	86					0	0	0.006320	0	0
MGAM	8972	broad.mit.edu	37	7	141708471	141708471	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:141708471G>A	uc003vwy.2	+	3	347	c.293G>A	c.(292-294)CGA>CAA	p.R98Q		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	98	P-type 1.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAATTGGAACGAATTAATTGC	0.403													19	59					0	0	0.003330	0	0
MGAM	8972	broad.mit.edu	37	7	141736669	141736669	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:141736669C>T	uc003vwy.2	+	18	2177	c.2123C>T	c.(2122-2124)TCC>TTC	p.S708F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	708	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTGTTGAATTCCTCCAGGCAC	0.547													84	248					0	0	0.003610	0	0
CLCN1	1180	broad.mit.edu	37	7	143048886	143048886	+	Missense_Mutation	SNP	C	T	T	rs80356706	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:143048886C>T	uc003wcr.1	+	23	2882	c.2795C>T	c.(2794-2796)CCA>CTA	p.P932L	CLCN1_uc011ktc.1_Missense_Mutation_p.P544L	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	932	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					ACCCCTGTGCCATCTCCTTCC	0.637													8	35					0	0	0.004482	0	0
OR2F2	135948	broad.mit.edu	37	7	143633213	143633213	+	Missense_Mutation	SNP	G	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:143633213G>C	uc011ktv.1	+	1	888	c.888G>C	c.(886-888)GAG>GAC	p.E296D		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					GGAATAAAGAGGTGAAGGGGG	0.428													21	61					0	0	0.001523	0	0
OR2A5	393046	broad.mit.edu	37	7	143747507	143747507	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:143747507C>T	uc011ktw.1	+	1	13	c.13C>T	c.(13-15)CAG>TAG	p.Q5*		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					GACAAAAAATCAGACATGGGT	0.478													32	90					0	0	0.002836	0	0
PDIA4	9601	broad.mit.edu	37	7	148701135	148701135	+	Silent	SNP	G	A	A	rs145077850	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:148701135G>A	uc003wff.2	-	10	1971	c.1689C>T	c.(1687-1689)CCC>CCT	p.P563P		NM_004911	NP_004902	P13667	PDIA4_HUMAN	protein disulfide isomerase A4 precursor	563	Thioredoxin 3.				cell redox homeostasis|glycerol ether metabolic process|protein secretion	endoplasmic reticulum lumen|melanosome	electron carrier activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			lung(5)|ovary(1)	6	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00385)			TGTTGTACACGGGCTCTAGCT	0.582													45	103					0	0	0.003610	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269487	150269487	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:150269487C>T	uc003whl.2	+	3	411	c.329C>T	c.(328-330)ACC>ATC	p.T110I	GIMAP4_uc011kuu.1_Intron|GIMAP4_uc011kuv.1_Missense_Mutation_p.T124I	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	110							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		ATTCTTCTGACCTCCCCAGGG	0.502													23	72					0	0	0.004656	0	0
GIMAP6	474344	broad.mit.edu	37	7	150327227	150327227	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:150327227C>T	uc003whn.2	-	2	428	c.4G>A	c.(4-6)GAG>AAG	p.E2K	GIMAP6_uc003whm.2_5'UTR	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	2							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCTTCTTCCTCCATCTACaaa	0.423													31	67					0	0	0.007291	0	0
KCNH2	3757	broad.mit.edu	37	7	150648537	150648537	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:150648537G>A	uc003wic.2	-	7	1957	c.1944C>T	c.(1942-1944)GGC>GGT	p.G648G	KCNH2_uc003wib.2_Silent_p.G308G|KCNH2_uc011kux.1_Silent_p.G552G|KCNH2_uc003wid.2_Silent_p.G308G|KCNH2_uc003wie.2_Silent_p.G648G	NM_000238	NP_000229	Q12809	KCNH2_HUMAN	voltage-gated potassium channel, subfamily H,	648	Helical; Name=Segment S6; (Potential).				blood circulation|muscle contraction|regulation of heart contraction|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|two-component sensor activity			skin(3)|ovary(1)	4	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiodarone(DB01118)|Amsacrine(DB00276)|Astemizole(DB00637)|Carvedilol(DB01136)|Cisapride(DB00604)|Dofetilide(DB00204)|Halofantrine(DB01218)|Ibutilide(DB00308)|Pimozide(DB01100)|Propafenone(DB01182)|Quinidine(DB00908)|Sertindole(DB06144)|Sotalol(DB00489)|Terfenadine(DB00342)|Verapamil(DB00661)	CACACTCACAGCCAATGAGCA	0.612													42	106					0	0	0.003610	0	0
MLL3	58508	broad.mit.edu	37	7	151835979	151835979	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:151835979G>A	uc003wla.2	-	58	14764	c.14545C>T	c.(14545-14547)CAT>TAT	p.H4849Y	MLL3_uc003wkz.2_Missense_Mutation_p.H3963Y|MLL3_uc003wkx.2_Missense_Mutation_p.H1007Y|MLL3_uc003wky.2_Missense_Mutation_p.H2409Y	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4849	SET.|S-adenosyl-L-methionine binding (By similarity).				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCACACGAATGGTTGATATAC	0.403			N		medulloblastoma								34	101					0	0	0.004289	0	0
MLL3	58508	broad.mit.edu	37	7	151962193	151962193	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:151962193C>T	uc003wla.2	-	8	1333	c.1114G>A	c.(1114-1116)GAT>AAT	p.D372N		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	372	PHD-type 1.|RING-type.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ACCGCTATATCCAGGCACATT	0.453			N		medulloblastoma								10	456					0	0	0.008291	0	0
DLGAP2	9228	broad.mit.edu	37	8	1575016	1575016	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:1575016C>T	uc003wpl.2	+	4	1410	c.1313C>T	c.(1312-1314)GCC>GTC	p.A438V	DLGAP2_uc003wpm.2_Missense_Mutation_p.A438V	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	517					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		TACATGAGGGCCGTCAGCACC	0.657													3	12					0	0	0.004672	0	0
CSMD1	64478	broad.mit.edu	37	8	2855685	2855685	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:2855685C>T	uc011kwk.1	-	54	8618	c.8228G>A	c.(8227-8229)GGA>GAA	p.G2743E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2072E|CSMD1_uc010lrg.2_Missense_Mutation_p.G753E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2743	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGCAGGGTTTCCAGGGTGACC	0.458													46	99					0	0	0.003610	0	0
CSMD1	64478	broad.mit.edu	37	8	2964062	2964062	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:2964062G>A	uc011kwk.1	-	46	7330	c.6940C>T	c.(6940-6942)CCA>TCA	p.P2314S	CSMD1_uc011kwj.1_Missense_Mutation_p.P1706S|CSMD1_uc010lrg.2_Missense_Mutation_p.P382S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2314	Extracellular (Potential).|Sushi 13.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCACATGTTGGGAGAGAACCC	0.423													7	17					0	0	0.003080	0	0
EPB49	2039	broad.mit.edu	37	8	21938682	21938682	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:21938682G>A	uc011kyt.1	+	14	1311	c.1082G>A	c.(1081-1083)GGG>GAG	p.G361E	EPB49_uc010ltl.2_Missense_Mutation_p.G339E|EPB49_uc010ltn.2_Missense_Mutation_p.G314E|EPB49_uc011kyu.1_Missense_Mutation_p.G361E|EPB49_uc011kyv.1_Missense_Mutation_p.G361E|EPB49_uc010ltq.2_Missense_Mutation_p.G339E	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	361	HP.				actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		CTGCCACCGGGGGTGGATCGG	0.612													18	76					0	0	0.007413	0	0
KIAA1967	57805	broad.mit.edu	37	8	22470634	22470634	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:22470634C>T	uc003xch.2	+	8	826	c.689C>T	c.(688-690)CCT>CTT	p.P230L	KIAA1967_uc003xci.2_Missense_Mutation_p.P230L|KIAA1967_uc003xcj.1_5'UTR	NM_199205	NP_954675	Q8N163	K1967_HUMAN	p30 DBC protein	230					apoptosis|positive regulation of apoptosis	mitochondrial matrix|nucleus	enzyme binding|enzyme inhibitor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(55;0.0421)|Breast(100;0.102)|all_epithelial(46;0.142)		BRCA - Breast invasive adenocarcinoma(99;0.00593)|Colorectal(74;0.0157)|COAD - Colon adenocarcinoma(73;0.064)		CACCTCACTCCTTACACTGTG	0.507													17	40					0	0	0.004007	0	0
STC1	6781	broad.mit.edu	37	8	23702439	23702439	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:23702439G>A	uc003xdw.1	-	4	872	c.588C>T	c.(586-588)ATC>ATT	p.I196I		NM_003155	NP_003146	P52823	STC1_HUMAN	stanniocalcin 1 precursor	196					cell surface receptor linked signaling pathway|cell-cell signaling|cellular calcium ion homeostasis		hormone activity			skin(3)|upper_aerodigestive_tract(1)	4		Prostate(55;0.055)|Breast(100;0.116)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		CTGTCTGCAGGATGTGGAAGA	0.537													39	91					0	0	0.006230	0	0
ADAMDEC1	27299	broad.mit.edu	37	8	24242035	24242035	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:24242035C>T	uc003xdz.2	+	1	238	c.18C>T	c.(16-18)TCC>TCT	p.S6S	ADAMDEC1_uc010lub.2_5'UTR|ADAMDEC1_uc011lab.1_5'UTR	NM_014479	NP_055294	O15204	ADEC1_HUMAN	ADAM-like, decysin 1 isoform 1	6					integrin-mediated signaling pathway|negative regulation of cell adhesion|proteolysis	extracellular region|integral to membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			skin(2)	2		Prostate(55;0.0181)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)|BRCA - Breast invasive adenocarcinoma(99;0.168)		GTGGGATCTCCCAGCTACCTG	0.458													11	22					0	0	0.000978	0	0
ADAM7	8756	broad.mit.edu	37	8	24333986	24333986	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:24333986G>A	uc003xeb.2	+	8	787	c.674G>A	c.(673-675)CGA>CAA	p.R225Q	ADAM7_uc003xec.2_5'UTR	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	225	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CTAAGGAACCGAATTTGGGGA	0.323													13	50					0	0	0.004990	0	0
SCARA5	286133	broad.mit.edu	37	8	27737264	27737264	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:27737264C>T	uc003xgj.2	-	8	1613	c.1173G>A	c.(1171-1173)ATG>ATA	p.M391I	SCARA5_uc010luz.2_Missense_Mutation_p.M166I	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	391	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		GGCGGATCATCATCGGGGCCT	0.652													13	45					0	0	0.002450	0	0
KCNU1	157855	broad.mit.edu	37	8	36691136	36691136	+	Missense_Mutation	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:36691136T>C	uc010lvw.2	+	11	1258	c.1171T>C	c.(1171-1173)TCT>CCT	p.S391P	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	391	RCK N-terminal.|Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		AACGTTCATTTCTGGATCTGC	0.403													14	45					0	0	0.004990	0	0
GPR124	25960	broad.mit.edu	37	8	37691640	37691640	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:37691640C>T	uc003xkj.2	+	11	1965	c.1602C>T	c.(1600-1602)ATC>ATT	p.I534I	GPR124_uc010lvy.2_Silent_p.I534I	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	534	Extracellular (Potential).				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			CCCAGCACATCTCAGTGGTAA	0.697													12	36					0	0	0.001855	0	0
PXDNL	137902	broad.mit.edu	37	8	52322009	52322009	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:52322009C>T	uc003xqu.3	-	17	2276	c.2175G>A	c.(2173-2175)GCG>GCA	p.A725A	PXDNL_uc003xqt.3_RNA	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	725					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CGCGGTACTTCGCATGGAAAC	0.657													17	41					0	0	0.007413	0	0
PXDNL	137902	broad.mit.edu	37	8	52339295	52339295	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:52339295G>A	uc003xqu.3	-	13	1650	c.1549C>T	c.(1549-1551)CCT>TCT	p.P517S		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	517	Ig-like C2-type 4.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				GTATCCTGAGGAAGTTGAGTA	0.368													6	21					0	0	0.001168	0	0
RP1	6101	broad.mit.edu	37	8	55541974	55541974	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:55541974G>A	uc003xsd.1	+	4	5680	c.5532G>A	c.(5530-5532)AAG>AAA	p.K1844K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1844					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CCTGTGCCAAGGAAAGAATAG	0.408													15	24					0	0	0.003163	0	0
PLAG1	5324	broad.mit.edu	37	8	57079666	57079666	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:57079666G>A	uc003xsq.3	-	3	1090	c.639C>T	c.(637-639)TTC>TTT	p.F213F	PLAG1_uc003xsr.3_Silent_p.F213F|PLAG1_uc010lyi.2_Silent_p.F213F|PLAG1_uc010lyj.2_Silent_p.F131F	NM_001114635	NP_001108107	Q6DJT9	PLAG1_HUMAN	pleiomorphic adenoma gene 1 isoform b	213	Decreased nuclear import with localization in the nucleus but also in the cytoplasm.|C2H2-type 7.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding		CTNNB1/PLAG1(60)|FGFR1_ENST00000447712/PLAG1(28)|CHCHD7/PLAG1(12)|LIFR_ENST00000263409/PLAG1(10)|HAS2/PLAG1(10)|COL1A2/PLAG1(3)|TCEA1_ENST00000521604/PLAG1(3)	salivary_gland(113)|soft_tissue(13)|lung(1)|central_nervous_system(1)|breast(1)	129		all_lung(136;0.0548)|Lung NSC(129;0.0718)|all_epithelial(80;0.125)	Epithelial(17;0.00179)|all cancers(17;0.0125)			ACTGACAGAGGAAGTCCTTTC	0.463			T	TCEA1|LIFR|CTNNB1|CHCHD7	salivary adenoma								17	48					0	0	0.006122	0	0
DNAJC5B	85479	broad.mit.edu	37	8	67012243	67012243	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:67012243C>T	uc003xvs.1	+	6	868	c.577C>T	c.(577-579)CGA>TGA	p.R193*	DNAJC5B_uc003xvt.1_RNA	NM_033105	NP_149096	Q9UF47	DNJ5B_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	193					protein folding	membrane	heat shock protein binding|unfolded protein binding				0		Lung NSC(129;0.114)|all_lung(136;0.188)	Epithelial(68;0.0213)|all cancers(69;0.0839)|BRCA - Breast invasive adenocarcinoma(89;0.0886)|OV - Ovarian serous cystadenocarcinoma(28;0.112)			AGAAGGATCTCGAAGTTATTG	0.433													11	32					0	0	0.008291	0	0
PREX2	80243	broad.mit.edu	37	8	68989661	68989661	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:68989661G>A	uc003xxv.1	+	15	1626	c.1599G>A	c.(1597-1599)ATG>ATA	p.M533I	PREX2_uc003xxu.1_Missense_Mutation_p.M533I|PREX2_uc011lez.1_Missense_Mutation_p.M468I	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	533	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AAGAGGCAATGATATTTGGCG	0.438													31	82					0	0	0.004878	0	0
EYA1	2138	broad.mit.edu	37	8	72229866	72229866	+	Silent	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:72229866T>A	uc003xys.3	-	6	764	c.477A>T	c.(475-477)GGA>GGT	p.G159G	EYA1_uc003xyr.3_Silent_p.G154G|EYA1_uc003xyt.3_Silent_p.G126G|EYA1_uc010lzf.2_Silent_p.G86G|EYA1_uc003xyu.2_Silent_p.G159G|EYA1_uc011lfe.1_Silent_p.G153G|EYA1_uc003xyv.2_Silent_p.G37G	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	159					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			ATCCTGTCTGTCCAGGTGACT	0.458													52	148					0	0	0.003610	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618650	77618650	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:77618650C>T	uc003yav.2	+	2	2714	c.2327C>T	c.(2326-2328)ACC>ATC	p.T776I	ZFHX4_uc003yat.1_Missense_Mutation_p.T776I|ZFHX4_uc003yau.1_Missense_Mutation_p.T776I|ZFHX4_uc003yaw.1_Missense_Mutation_p.T776I	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	776	C2H2-type 4; degenerate.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GATTATGAAACCAATGTCGCC	0.507										HNSCC(33;0.089)			13	23					0	0	0.001368	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768484	77768484	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:77768484C>T	uc003yav.2	+	10	9579	c.9192C>T	c.(9190-9192)CTC>CTT	p.L3064L	ZFHX4_uc003yau.1_Silent_p.L3109L|ZFHX4_uc003yaw.1_Silent_p.L3064L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3064	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGTCCTTCTCCCCGGAATGA	0.527										HNSCC(33;0.089)			19	38					0	0	0.008871	0	0
RUNX1T1	862	broad.mit.edu	37	8	92972609	92972609	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:92972609T>A	uc003yfd.2	-	11	1760	c.1676A>T	c.(1675-1677)CAG>CTG	p.Q559L	RUNX1T1_uc003yfc.1_Missense_Mutation_p.Q532L|RUNX1T1_uc003yfe.1_Missense_Mutation_p.Q522L|RUNX1T1_uc010mao.2_Missense_Mutation_p.Q532L|RUNX1T1_uc011lgi.1_Missense_Mutation_p.Q570L|uc010mam.2_5'Flank|RUNX1T1_uc010man.1_Missense_Mutation_p.Q184L|RUNX1T1_uc003yfb.1_Missense_Mutation_p.Q522L	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	559					generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GTCTCCCTGCTGCTGGGCCTG	0.607													13	38					0	0	0.001368	0	0
DPY19L4	286148	broad.mit.edu	37	8	95768290	95768290	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:95768290C>T	uc003ygx.2	+	7	762	c.638C>T	c.(637-639)TCC>TTC	p.S213F		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	213						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					ATTGAATACTCCATTCCTTTA	0.259													135	345					0	0	0.003610	0	0
DPY19L4	286148	broad.mit.edu	37	8	95782750	95782750	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:95782750C>T	uc003ygx.2	+	13	1529	c.1405C>T	c.(1405-1407)CAT>TAT	p.H469Y		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	469	Helical; (Potential).					integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					AATAATTTATCATGTAATTCA	0.299													100	283					0	0	0.003610	0	0
NIPAL2	79815	broad.mit.edu	37	8	99208229	99208229	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:99208229G>A	uc003yil.1	-	9	1141	c.885C>T	c.(883-885)ATC>ATT	p.I295I	NIPAL2_uc011lgw.1_Silent_p.I91I|NIPAL2_uc003yim.1_Silent_p.I295I	NM_024759	NP_079035	Q9H841	NPAL2_HUMAN	NIPA-like domain containing 2	295	Helical; (Potential).					integral to membrane					0						GATAAAATATGATACCTGTAA	0.269													13	26					0	0	0.001855	0	0
KLF10	7071	broad.mit.edu	37	8	103662565	103662565	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:103662565G>A	uc011lhk.1	-	4	1392	c.1238C>T	c.(1237-1239)TCT>TTT	p.S413F	KLF10_uc011lhj.1_Missense_Mutation_p.S402F	NM_005655	NP_005646	Q13118	KLF10_HUMAN	Kruppel-like factor 10 isoform a	413	C2H2-type 2.				cell proliferation|cell-cell signaling|negative regulation of cell proliferation|negative regulation of transcription from RNA polymerase II promoter|skeletal system development|transforming growth factor beta receptor signaling pathway	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_epithelial(15;5.63e-07)|Lung NSC(17;8.18e-05)|all_lung(17;0.000169)		OV - Ovarian serous cystadenocarcinoma(57;0.000112)|STAD - Stomach adenocarcinoma(118;0.0826)			CAGTTCATCAGAACGGGCAAA	0.468													11	41					0	0	0.008291	0	0
ZFPM2	23414	broad.mit.edu	37	8	106800990	106800990	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:106800990G>A	uc003ymd.2	+	6	600	c.577G>A	c.(577-579)GAA>AAA	p.E193K	ZFPM2_uc011lhs.1_5'UTR	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	193					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			CTCTGAGGGTGAAGAGCTAAT	0.458													39	77					0	0	0.002852	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110437354	110437354	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:110437354G>A	uc003yne.2	+	24	2842	c.2738G>A	c.(2737-2739)GGA>GAA	p.G913E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	913	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTCTACAGAGGAAATAATTGG	0.338										HNSCC(38;0.096)			8	22					0	0	0.004482	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457751	110457751	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:110457751C>T	uc003yne.2	+	38	5757	c.5653C>T	c.(5653-5655)CCC>TCC	p.P1885S		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1885	Extracellular (Potential).|IPT/TIG 11.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTGCCGCACTCCCGCTGGGAC	0.433										HNSCC(38;0.096)			6	34					0	0	0.001168	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110509188	110509188	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:110509188C>T	uc003yne.2	+	64	10472	c.10368C>T	c.(10366-10368)GCC>GCT	p.A3456A		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3456	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			ACAATGAAGCCCATGGAGGTT	0.378										HNSCC(38;0.096)			28	79					0	0	0.006320	0	0
SAMD12	401474	broad.mit.edu	37	8	119593128	119593128	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:119593128G>A	uc003yom.2	-	2	147	c.18C>T	c.(16-18)CTC>CTT	p.L6L	SAMD12_uc010mda.1_Silent_p.L6L|SAMD12_uc010mdb.1_RNA	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	6										ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			AACCACAGTGGAGAGCTAGGA	0.393													8	26					0	0	0.004482	0	0
COL14A1	7373	broad.mit.edu	37	8	121259858	121259858	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:121259858C>T	uc003yox.2	+	21	2751	c.2486C>T	c.(2485-2487)TCC>TTC	p.S829F	COL14A1_uc003yoy.2_Missense_Mutation_p.S507F	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	829	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TCAGTACCATCCTCGGGGCCC	0.473													21	34					0	0	0.002299	0	0
TG	7038	broad.mit.edu	37	8	133885333	133885333	+	Missense_Mutation	SNP	C	T	T	rs143578780		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:133885333C>T	uc003ytw.2	+	5	546	c.505C>T	c.(505-507)CGT>TGT	p.R169C		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	169	Thyroglobulin type-1 3.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AATAAGAAATCGTCGTCTTCT	0.443													15	26					0	0	0.006122	0	0
TG	7038	broad.mit.edu	37	8	134107327	134107327	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:134107327G>A	uc003ytw.2	+	42	7320	c.7279G>A	c.(7279-7281)GAG>AAG	p.E2427K	TG_uc010mdw.2_Missense_Mutation_p.E1186K|TG_uc011ljb.1_Missense_Mutation_p.E796K|TG_uc011ljc.1_Missense_Mutation_p.E560K|SLA_uc003ytz.2_Intron|SLA_uc011lje.1_Intron|SLA_uc011ljf.1_Intron|SLA_uc011ljg.1_Intron|SLA_uc010mea.2_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2427					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CATCAGCCATGAGAGGGCTCA	0.602													50	141					0	0	0.003610	0	0
KCNK9	51305	broad.mit.edu	37	8	140630786	140630786	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:140630786C>T	uc003yvf.1	-	2	904	c.840G>A	c.(838-840)CGG>CGA	p.R280R	KCNK9_uc003yvg.1_Silent_p.R280R|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	280	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			GCCGGCTGGGCCGCGGCTCCT	0.652													18	70					0	0	0.001523	0	0
MIR151	442893	broad.mit.edu	37	8	141742711	141742711	+	RNA	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:141742711G>A	hsa-mir-151|MI0000809	-			c.42G>A			PTK2_uc003yvo.2_Intron|PTK2_uc011ljq.1_Intron|PTK2_uc003yvp.2_Intron|PTK2_uc003yvq.2_Intron|PTK2_uc003yvr.2_Intron|PTK2_uc003yvs.2_Intron|PTK2_uc003yvt.2_Intron|PTK2_uc003yvu.2_Intron|PTK2_uc003yvv.2_Intron|PTK2_uc011ljr.1_Intron																	0						gtctagtaggggatgagacat	0.035													10	30					0	0	0.006214	0	0
DENND3	22898	broad.mit.edu	37	8	142161759	142161759	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:142161759C>T	uc003yvy.2	+	7	935	c.657C>T	c.(655-657)TTC>TTT	p.F219F	DENND3_uc010mep.2_Silent_p.F232F	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	219	DENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TCGTCTTCTTCTCCTCGGACT	0.532													27	98					0	0	0.001786	0	0
CYP11B2	1585	broad.mit.edu	37	8	143996195	143996195	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:143996195C>T	uc003yxk.1	-	4	728	c.725G>A	c.(724-726)AGG>AAG	p.R242K		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	242					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	AGACAGGCTCCTGGGCATGAA	0.612									Familial_Hyperaldosteronism_type_I				6	28					0	0	0.001168	0	0
EPPK1	83481	broad.mit.edu	37	8	144940357	144940357	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr8:144940357G>A	uc003zaa.1	-	2	15088	c.15075C>T	c.(15073-15075)CAC>CAT	p.H5025H		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5025	Plectin 64.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CGGGCACGCGGTGGCTGTGCA	0.692													22	405					0	0	0.008361	0	0
RFX3	5991	broad.mit.edu	37	9	3293183	3293183	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:3293183G>A	uc003zhr.2	-	7	937	c.625C>T	c.(625-627)CTT>TTT	p.L209F	RFX3_uc010mhd.2_Missense_Mutation_p.L209F|RFX3_uc003zhs.1_Missense_Mutation_p.L209F|RFX3_uc003zht.1_Missense_Mutation_p.L209F|RFX3_uc010mhe.1_Missense_Mutation_p.L184F	NM_134428	NP_602304	P48380	RFX3_HUMAN	regulatory factor X3 isoform b	209	RFX-type winged-helix.				cell maturation|ciliary cell motility|cilium assembly|cilium movement involved in determination of left/right asymmetry|endocrine pancreas development|negative regulation of transcription, DNA-dependent|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type B pancreatic cell development|regulation of insulin secretion	nuclear chromatin	protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4				GBM - Glioblastoma multiforme(50;0.00124)|Lung(2;0.0337)		CAGTGTCGAAGGTAGTGGTTG	0.448													35	40					0	0	0.003755	0	0
MPDZ	8777	broad.mit.edu	37	9	13138031	13138031	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:13138031G>A	uc010mia.1	-	28	4182	c.4125C>T	c.(4123-4125)GTC>GTT	p.V1375V	MPDZ_uc003zky.3_5'Flank|MPDZ_uc010mib.2_Silent_p.V80V|MPDZ_uc010mhx.2_Silent_p.V197V|MPDZ_uc011lmm.1_Silent_p.V234V|MPDZ_uc003zkz.3_Silent_p.V68V|MPDZ_uc010mhy.2_Silent_p.V1375V|MPDZ_uc010mhz.2_Silent_p.V1342V|MPDZ_uc011lmn.1_Silent_p.V1342V|MPDZ_uc003zlb.3_Silent_p.V1375V	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1375	PDZ 8.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		CCACTATGAAGACACTCATCC	0.443													22	14					0	0	0.003330	0	0
CDKN2A	1029	broad.mit.edu	37	9	21974679	21974679	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:21974679G>A	uc003zpk.2	-	1	360	c.148C>T	c.(148-150)CAG>TAG	p.Q50*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Nonsense_Mutation_p.Q50*|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	50	ANK 2.		Q -> R (in CMM2).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(25)|p.Q50*(5)|p.Q50R(1)|p.V28_V51del(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CTACCCACCTGGATCGGCCTC	0.682		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			227	244					0	0	0.003610	0	0
C9orf72	203228	broad.mit.edu	37	9	27556764	27556764	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:27556764G>A	uc003zqq.2	-	8	983	c.886C>T	c.(886-888)CGG>TGG	p.R296W		NM_018325	NP_060795	Q96LT7	CI072_HUMAN	hypothetical protein LOC203228 isoform a	296										ovary(3)|central_nervous_system(1)	4		all_neural(11;7.57e-10)		LUSC - Lung squamous cell carcinoma(38;0.0001)|Lung(218;0.00016)		ATGACTTGCCGGAAAGGCAGC	0.373													71	71					0	0	0.003610	0	0
DNAI1	27019	broad.mit.edu	37	9	34517343	34517343	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:34517343G>A	uc003zum.2	+	19	2072	c.1879G>A	c.(1879-1881)GCC>ACC	p.A627T		NM_012144	NP_036276	Q9UI46	DNAI1_HUMAN	dynein, axonemal, intermediate chain 1	627	WD 5.				cell projection organization	cilium axoneme|cytoplasm|dynein complex|microtubule	motor activity				0	all_epithelial(49;0.244)		LUSC - Lung squamous cell carcinoma(29;0.0107)|STAD - Stomach adenocarcinoma(86;0.212)	GBM - Glioblastoma multiforme(74;0.0222)		GCCTGTGGCGGCCAAAAAGAA	0.542									Kartagener_syndrome				16	19					0	0	0.004007	0	0
C9orf131	138724	broad.mit.edu	37	9	35042999	35042999	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:35042999G>A	uc003zvw.2	+	2	402	c.373G>A	c.(373-375)GAA>AAA	p.E125K	C9orf131_uc003zvu.2_Missense_Mutation_p.E77K|C9orf131_uc003zvv.2_Missense_Mutation_p.E52K|C9orf131_uc003zvx.2_Missense_Mutation_p.E90K	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	125											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			TCCTACCAAAGAAGCTCCCAC	0.413													41	44					0	0	0.005524	0	0
Unknown	0	broad.mit.edu	37	9	38586224	38586224	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:38586224C>T	uc004abf.1	-	4	1267	c.1234G>A	c.(1234-1236)GAC>AAC	p.D412N	uc004abg.3_Missense_Mutation_p.D735N					RecName: Full=Ankyrin repeat domain-containing protein 18B;																		TTCAGTTGGTCTGTATTTAAG	0.239													5	6					0	0	0.001984	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39177470	39177470	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:39177470G>A	uc004abi.2	-	6	1011	c.772C>T	c.(772-774)CCT>TCT	p.P258S	CNTNAP3_uc004abj.2_Missense_Mutation_p.P258S|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.P258S|CNTNAP3_uc011lqs.1_Missense_Mutation_p.P258S|CNTNAP3_uc004abl.1_Missense_Mutation_p.P170S	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	258	Extracellular (Potential).|Laminin G-like 1.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		AGGGTCACAGGAGCAATAGTG	0.498													31	47					0	0	0.002836	0	0
TRPM6	140803	broad.mit.edu	37	9	77353524	77353524	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:77353524G>A	uc004ajl.1	-	36	5813	c.5575C>T	c.(5575-5577)CTG>TTG	p.L1859L	TRPM6_uc004ajk.1_Silent_p.L1854L|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.L810L|TRPM6_uc010mpd.1_Silent_p.L692L|TRPM6_uc010mpe.1_Silent_p.L406L|TRPM6_uc004ajj.1_Silent_p.L815L	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1859	Alpha-type protein kinase.|Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AAAACTTCCAGGAACCTGTTA	0.443													10	25					0	0	0.008291	0	0
ROR2	4920	broad.mit.edu	37	9	94486143	94486143	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:94486143G>A	uc004arj.1	-	9	2832	c.2633C>T	c.(2632-2634)CCC>CTC	p.P878L	ROR2_uc004ari.1_Intron	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	878	Cytoplasmic (Potential).|Ser/Thr-rich.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						TGTGTTGGAGGGGGCCGTGGT	0.647													59	66					0	0	0.003610	0	0
PHF2	5253	broad.mit.edu	37	9	96428317	96428317	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:96428317C>T	uc004aub.2	+	16	2309	c.2162C>T	c.(2161-2163)CCA>CTA	p.P721L	PHF2_uc011lug.1_Missense_Mutation_p.P604L|PHF2_uc004auc.2_Missense_Mutation_p.P140L	NM_005392	NP_005383	O75151	PHF2_HUMAN	PHD finger protein 2	721					liver development|negative regulation of chromatin silencing at rDNA|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K9 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1		Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;9.11e-28)		GTCACGAAGCCAAAGCTGGAC	0.622													19	29					0	0	0.001882	0	0
CYLC2	1539	broad.mit.edu	37	9	105767023	105767023	+	Nonsense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:105767023G>A	uc004bbs.2	+	4	297	c.227G>A	c.(226-228)TGG>TAG	p.W76*		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	76	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				CAACCATTATGGATGTACCGT	0.388													15	21					0	0	0.004990	0	0
TMEM38B	55151	broad.mit.edu	37	9	108467950	108467950	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:108467950G>A	uc004bcu.1	+	2	302	c.185G>A	c.(184-186)GGA>GAA	p.G62E	TMEM38B_uc010mtn.1_Missense_Mutation_p.G62E	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	62	Helical; (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						TTTGGTGGAGGAATTTTATCC	0.423													31	50					0	0	0.002836	0	0
C9orf43	257169	broad.mit.edu	37	9	116185748	116185748	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:116185748C>T	uc004bho.3	+	7	1022	c.626C>T	c.(625-627)TCC>TTC	p.S209F	C9orf43_uc004bhp.2_Missense_Mutation_p.S209F	NM_152786	NP_689999	Q8TAL5	CI043_HUMAN	hypothetical protein LOC257169	209											0						TGGGCTCAATCCGAAGCGTTA	0.502													25	36					0	0	0.005443	0	0
COL27A1	85301	broad.mit.edu	37	9	117014922	117014922	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:117014922C>T	uc011lxl.1	+	26	3083	c.3083C>T	c.(3082-3084)TCG>TTG	p.S1028L	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1028	Pro-rich.|Collagen-like 7.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CCCAAGGGGTCGATGGTAAGG	0.592													63	70					0	0	0.003610	0	0
CRB2	286204	broad.mit.edu	37	9	126133213	126133213	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:126133213C>T	uc004bnx.1	+	7	1973	c.1881C>T	c.(1879-1881)TTC>TTT	p.F627F	CRB2_uc004bnw.1_Silent_p.F627F	NM_173689	NP_775960	Q5IJ48	CRUM2_HUMAN	crumbs homolog 2 precursor	627	Extracellular (Potential).|EGF-like 10.					extracellular region|integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GGACTCATTTCCGTTGCGACT	0.622													26	28					0	0	0.006320	0	0
PPP6C	5537	broad.mit.edu	37	9	127912061	127912061	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:127912061G>A	uc004bpg.3	-	7	1030	c.809C>T	c.(808-810)TCG>TTG	p.S270L	PPP6C_uc010mwv.2_Missense_Mutation_p.S307L|PPP6C_uc010mww.2_Missense_Mutation_p.S248L|PPP6C_uc011lzr.1_Missense_Mutation_p.S123L	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	270					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						GACCATGATCGAAGCAATATT	0.408													19	18					0	0	0.006122	0	0
VAV2	7410	broad.mit.edu	37	9	136650974	136650974	+	Nonsense_Mutation	SNP	C	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:136650974C>A	uc004ces.2	-	17	1502	c.1456G>T	c.(1456-1458)GGA>TGA	p.G486*	VAV2_uc004cer.2_Nonsense_Mutation_p.G476*|VAV2_uc004cet.1_Nonsense_Mutation_p.G25*	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	486	PH.				angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		CCCTGCTTTCCTTGAAGGTGA	0.537													15	9					2.31682e-05	3.08312e-05	0.003163	1	0
COL5A1	1289	broad.mit.edu	37	9	137716702	137716702	+	Splice_Site	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:137716702G>A	uc004cfe.2	+	62	5336	c.4954_splice	c.e62+1	p.G1652_splice	uc004cff.2_Intron	NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein						axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TTCCCAGATGGTGAGGGCCTG	0.662													10	13					0	0	0.006214	0	0
OLFM1	10439	broad.mit.edu	37	9	137987737	137987737	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:137987737G>T	uc010nar.2	+	3	644	c.328G>T	c.(328-330)GTC>TTC	p.V110F	OLFM1_uc004cfl.3_Missense_Mutation_p.V92F|OLFM1_uc004cfk.3_Missense_Mutation_p.V92F|OLFM1_uc004cfm.3_Missense_Mutation_p.V110F	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	110	Potential.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		ATCCATAGAGGTCTTGGACAG	0.512													30	34					1.45844e-13	1.96693e-13	0.002836	1	0
EXD3	54932	broad.mit.edu	37	9	140218287	140218287	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:140218287C>T	uc004cmp.2	-	19	2270	c.2074G>A	c.(2074-2076)GGG>AGG	p.G692R	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Missense_Mutation_p.G343R	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	692					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						AGGCAGCGCCCAGCCCCGACC	0.672													16	15					0	0	0.003163	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071195	141071195	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr9:141071195C>T	uc004com.2	+	4	859	c.598C>T	c.(598-600)CCA>TCA	p.P200S	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGGCTTTGCCCCACTGACCAG	0.622													11	74					0	0	0.000978	0	0
CSF2RA	1438	broad.mit.edu	37	X	1422865	1422865	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:1422865C>T	uc010nct.2	+	12	1318	c.996C>T	c.(994-996)ATC>ATT	p.I332I	CSF2RA_uc011mhb.1_Silent_p.I332I|CSF2RA_uc004cpq.2_Intron|CSF2RA_uc004cpn.2_Silent_p.I332I|CSF2RA_uc004cpo.2_Silent_p.I332I|CSF2RA_uc010ncu.2_RNA|CSF2RA_uc011mhc.1_Silent_p.I199I|CSF2RA_uc004cpp.2_Intron|CSF2RA_uc010ncv.2_Silent_p.I366I|CSF2RA_uc004cpr.2_Intron	NM_001161529	NP_001155001	P15509	CSF2R_HUMAN	colony stimulating factor 2 receptor alpha chain	332	Helical; (Potential).					extracellular region|integral to plasma membrane	cytokine receptor activity			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Sargramostim(DB00020)	TGCTCCTAATCGTGGGAACCC	0.537													159	320					0	0	0.003610	0	0
SLC25A6	293	broad.mit.edu	37	X	1506175	1506175	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:1506175C>T	uc004cpt.2	-	3	832	c.736G>A	c.(736-738)GGA>AGA	p.G246R	SLC25A6_uc004cpu.2_RNA	NM_001636	NP_001627	P12236	ADT3_HUMAN	adenine nucleotide translocator 3	246	Solcar 3.				active induction of host immune response by virus|apoptosis|energy reserve metabolic process|regulation of insulin secretion|viral infectious cycle	integral to membrane|mitochondrial inner membrane presequence translocase complex	ATP:ADP antiporter activity|protein binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Clodronate(DB00720)	CGAGTACCTCCTTTGCGCCCG	0.672													41	97					0	0	0.003610	0	0
ARSH	347527	broad.mit.edu	37	X	2951252	2951252	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:2951252C>T	uc011mhj.1	+	9	1515	c.1515C>T	c.(1513-1515)TCC>TCT	p.S505S		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	505						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				TATTTGACTCCGTGATCAAAA	0.488													13	7					0	0	0.001855	0	0
MXRA5	25878	broad.mit.edu	37	X	3241070	3241070	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:3241070C>T	uc004crg.3	-	5	2813	c.2656G>A	c.(2656-2658)GAA>AAA	p.E886K		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	886						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCAACAACTTCCTCCAGAGGT	0.478													38	33					0	0	0.006999	0	0
VCX3A	51481	broad.mit.edu	37	X	6451786	6451786	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:6451786C>T	uc004crs.2	-	3	868	c.561G>A	c.(559-561)TAG>TAA	p.*187*	VCX3A_uc010ndk.1_RNA	NM_016379	NP_057463	Q9NNX9	VCX3_HUMAN	variable charge, X-linked 3A	187					brain development	nucleolus					0						AGCTGGCCGTCTACACACTCG	0.582													86	110					0	0	0.003610	0	0
DDX53	168400	broad.mit.edu	37	X	23018892	23018892	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:23018892G>A	uc004daj.2	+	1	806	c.718G>A	c.(718-720)GTA>ATA	p.V240I		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	240	Q motif.					nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						CATAATAAGGGTAGGGATTGT	0.408													24	19					0	0	0.002780	0	0
RP2	6102	broad.mit.edu	37	X	46719518	46719518	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:46719518C>T	uc004dgw.3	+	3	1053	c.864C>T	c.(862-864)TTC>TTT	p.F288F		NM_006915	NP_008846	O75695	XRP2_HUMAN	XRP2 protein	288					cell morphogenesis|CTP biosynthetic process|GTP biosynthetic process|protein folding|UTP biosynthetic process|visual perception	cytoplasm|plasma membrane	ATP binding|GTP binding|GTPase activator activity|nucleoside diphosphate kinase activity|unfolded protein binding				0						CACCTGACTTCCTTCCTCTTC	0.388													24	14					0	0	0.005443	0	0
GPKOW	27238	broad.mit.edu	37	X	48973501	48973501	+	Missense_Mutation	SNP	G	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:48973501G>T	uc004dmr.2	-	6	803	c.796C>A	c.(796-798)CCT>ACT	p.P266T		NM_015698	NP_056513	Q92917	GPKOW_HUMAN	G patch domain and KOW motifs	266	KOW 1.					nucleus	nucleic acid binding			ovary(2)	2						ACATTGTCAGGATCAAGGCCT	0.547													15	13					6.49762e-13	8.74344e-13	0.006122	1	0
Unknown	0	broad.mit.edu	37	X	51150935	51150935	+	Missense_Mutation	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:51150935T>A	uc004dpj.2	+	1	1169	c.1067T>A	c.(1066-1068)CTT>CAT	p.L356H		NM_203407	NP_981952			hypothetical protein LOC340602																		AGATCAGCCCTTCTCAGCCGC	0.612													24	12					0	0	0.003954	0	0
SSX7	280658	broad.mit.edu	37	X	52677369	52677369	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:52677369C>T	uc004dqx.1	-	6	567	c.408G>A	c.(406-408)GGG>GGA	p.G136G		NM_173358	NP_775494	Q7RTT5	SSX7_HUMAN	synovial sarcoma, X breakpoint 7	136					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding			skin(1)	1	Ovarian(276;0.236)					ACAGGTGTTTCCCATCGTTCT	0.483													87	59					0	0	0.003610	0	0
FAAH2	158584	broad.mit.edu	37	X	57473467	57473467	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:57473467C>T	uc004dvc.2	+	9	1372	c.1223C>T	c.(1222-1224)TCC>TTC	p.S408F		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	408						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity	p.S408S(1)		ovary(3)	3						ACCATCCCTTCCATTGGTATG	0.333										HNSCC(52;0.14)			11	10					0	0	0.008291	0	0
OPHN1	4983	broad.mit.edu	37	X	67283898	67283898	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:67283898G>A	uc004dww.3	-	21	2250	c.1956C>T	c.(1954-1956)TCC>TCT	p.S652S	OPHN1_uc011mpg.1_Intron	NM_002547	NP_002538	O60890	OPHN1_HUMAN	oligophrenin 1	652	Pro-rich.				axon guidance|endocytosis|filopodium assembly|small GTPase mediated signal transduction|substrate-dependent cell migration, cell extension	axon|cell junction|cytosol|dendritic spine|synapse	cytoskeletal adaptor activity|Rho GTPase activator activity|SH3 domain binding			ovary(2)	2						GCCTGCTTGGGGACTTCCTCC	0.562													40	29					0	0	0.006999	0	0
STARD8	9754	broad.mit.edu	37	X	67942407	67942407	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:67942407C>T	uc004dxa.2	+	11	2850	c.2478C>T	c.(2476-2478)GAC>GAT	p.D826D	STARD8_uc004dxb.2_Silent_p.D906D|STARD8_uc004dxc.3_Silent_p.D826D	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	826	START.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						ATATCCAGGACCTGCTGCGTG	0.647													7	14					0	0	0.004482	0	0
CDX4	1046	broad.mit.edu	37	X	72667348	72667348	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:72667348C>T	uc011mqk.1	+	1	259	c.259C>T	c.(259-261)CCT>TCT	p.P87S		NM_005193	NP_005184	O14627	CDX4_HUMAN	caudal type homeobox 4	87						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Renal(35;0.156)					GAGCGTGTATCCTGGGCCGTC	0.612													16	16					0	0	0.008871	0	0
KIAA2022	340533	broad.mit.edu	37	X	73962799	73962799	+	Silent	SNP	T	C	C			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:73962799T>C	uc004eby.2	-	3	2210	c.1593A>G	c.(1591-1593)GTA>GTG	p.V531V		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	531					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CCTTACGGGTTACTTTTCTTC	0.423													18	17					0	0	0.004990	0	0
POF1B	79983	broad.mit.edu	37	X	84570718	84570718	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:84570718C>T	uc004eer.2	-	8	1023	c.877G>A	c.(877-879)GAT>AAT	p.D293N	POF1B_uc004ees.2_Missense_Mutation_p.D293N	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	293							actin binding				0						CTTACCTCATCTGTAGACTCA	0.284													17	16					0	0	0.001523	0	0
DACH2	117154	broad.mit.edu	37	X	85769311	85769311	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:85769311C>T	uc004eew.2	+	3	727	c.557C>T	c.(556-558)TCT>TTT	p.S186F	DACH2_uc004eex.2_Missense_Mutation_p.S173F|DACH2_uc010nmq.2_Missense_Mutation_p.S52F|DACH2_uc011mra.1_Missense_Mutation_p.S19F|DACH2_uc010nmr.2_5'UTR	NM_053281	NP_444511	Q96NX9	DACH2_HUMAN	dachshund 2 isoform a	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|nucleotide binding			ovary(4)|pancreas(1)	5						CCTAAGCGTTCTTTGGGAGTG	0.448													7	13					0	0	0.004482	0	0
TIMM8A	1678	broad.mit.edu	37	X	100601521	100601521	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:100601521G>A	uc004ehd.2	-	2	565	c.260C>T	c.(259-261)TCC>TTC	p.S87F		NM_004085	NP_004076	O60220	TIM8A_HUMAN	translocase of inner mitochondrial membrane 8	87					nervous system development|protein import into mitochondrial inner membrane|transmembrane transport	mitochondrial inner membrane|mitochondrial intermembrane space protein transporter complex	protein binding				0						AACTGGCTTGGATTTCTGGGT	0.448													74	47					0	0	0.003610	0	0
TCEAL6	158931	broad.mit.edu	37	X	101396105	101396105	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:101396105C>T	uc004eiq.2	-	3	360	c.199G>A	c.(199-201)GAA>AAA	p.E67K		NM_001006938	NP_001006939	Q6IPX3	TCAL6_HUMAN	transcription elongation factor A (SII)-like 6	67	Glu-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1						CCCTGCTTTTCCTGGCTTCCC	0.398													39	45					0	0	0.006230	0	0
NXF3	56000	broad.mit.edu	37	X	102339406	102339406	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:102339406G>A	uc004eju.2	-	3	286	c.215C>T	c.(214-216)TCA>TTA	p.S72L	NXF3_uc010noi.1_5'Flank|NXF3_uc011mrw.1_Missense_Mutation_p.S72L|NXF3_uc011mrx.1_5'UTR	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	72						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						ATTATAGGGTGAAATAGTATA	0.428													47	33					0	0	0.003610	0	0
SERPINA7	6906	broad.mit.edu	37	X	105279124	105279124	+	Nonsense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:105279124C>T	uc004eme.1	-	2	891	c.875G>A	c.(874-876)TGG>TAG	p.W292*	SERPINA7_uc010npd.2_Nonsense_Mutation_p.W292*|SERPINA7_uc010npe.1_Nonsense_Mutation_p.W292*	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	292					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	TAAGCGGTTCCACTTCTTCAG	0.493													72	78					0	0	0.003610	0	0
CXorf57	55086	broad.mit.edu	37	X	105855709	105855710	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:105855709_105855710GG>AA	uc004emi.3	+	1	550_551	c.399_400GG>AA	c.(397-402)AGGGTC>AGAATC	p.V134I	CXorf57_uc004emj.3_Missense_Mutation_p.V134I|CXorf57_uc004emh.2_Missense_Mutation_p.V134I	NM_018015	NP_060485	Q6NSI4	CX057_HUMAN	hypothetical protein LOC55086	134										ovary(1)|lung(1)|breast(1)	3						GAATTTCCAGGGTCTCATGTCT	0.441													55	61					0	0	0.004672	0	0
KLHL13	90293	broad.mit.edu	37	X	117035815	117035815	+	Silent	SNP	T	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:117035815T>A	uc004eql.2	-	6	1523	c.1461A>T	c.(1459-1461)GGA>GGT	p.G487G	KLHL13_uc004eqk.2_Silent_p.G436G|KLHL13_uc011mtn.1_Silent_p.G327G|KLHL13_uc011mto.1_Silent_p.G481G|KLHL13_uc011mtp.1_Silent_p.G489G|KLHL13_uc004eqm.2_Silent_p.G436G|KLHL13_uc011mtq.1_Silent_p.G471G	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	487	Kelch 3.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						ACATCACTCCTCCATACACAG	0.353													24	20					0	0	0.003954	0	0
ATP1B4	23439	broad.mit.edu	37	X	119500469	119500469	+	Silent	SNP	G	A	A	rs145284908		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:119500469G>A	uc004esr.2	+	2	237	c.153G>A	c.(151-153)TCG>TCA	p.S51S	ATP1B4_uc004esq.2_Silent_p.S51S|ATP1B4_uc011mtx.1_Silent_p.S51S|ATP1B4_uc011mty.1_Silent_p.S51S	NM_001142447	NP_001135919	Q9UN42	AT1B4_HUMAN	ATPase, (Na+)/K+ transporting, beta 4	51	Glu-rich.|Nuclear (Potential).				ATP biosynthetic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to plasma membrane|nuclear inner membrane	sodium:potassium-exchanging ATPase activity			ovary(1)|skin(1)	2						TGCCCAAATCggaggaggagg	0.368													28	23					0	0	0.005443	0	0
XPNPEP2	7512	broad.mit.edu	37	X	128887197	128887197	+	Silent	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:128887197G>A	uc004eut.1	+	11	1324	c.1080G>A	c.(1078-1080)AAG>AAA	p.K360K		NM_003399	NP_003390	O43895	XPP2_HUMAN	X-prolyl aminopeptidase 2, membrane-bound	360					cellular process|proteolysis	anchored to membrane|plasma membrane	aminopeptidase activity|metal ion binding|metalloexopeptidase activity				0						AGAACAGCAAGGAGCAGGCCC	0.557													5	59					0	0	0.000602	0	0
USP26	83844	broad.mit.edu	37	X	132161573	132161573	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:132161573C>T	uc010nrm.1	-	6	1146	c.676G>A	c.(676-678)GAG>AAG	p.E226K	USP26_uc011mvf.1_Missense_Mutation_p.E226K	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	226					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TCTTCTAACTCTTTTAACTTC	0.363													17	12					0	0	0.004990	0	0
SPANXC	64663	broad.mit.edu	37	X	140335692	140335692	+	Silent	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:140335692C>T	uc004fbk.2	-	2	308	c.252G>A	c.(250-252)GAG>GAA	p.E84E	SPANXC_uc004fbl.2_RNA	NM_022661	NP_073152	Q9NY87	SPNXC_HUMAN	sperm protein associated with the nucleus, X	84	Poly-Glu.					cytoplasm|nucleus					0	Acute lymphoblastic leukemia(192;7.65e-05)					TGAATTCCTCCTCCTCCATTT	0.453													41	46					0	0	0.003610	0	0
PASD1	139135	broad.mit.edu	37	X	150832698	150832698	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:150832698G>A	uc004fev.3	+	11	1281	c.949G>A	c.(949-951)GAG>AAG	p.E317K		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	317						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					AGTGGACCAGGAGGGCCCAAT	0.597													31	22					0	0	0.008361	0	0
FATE1	89885	broad.mit.edu	37	X	150889904	150889904	+	Missense_Mutation	SNP	C	T	T			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:150889904C>T	uc004fex.2	+	3	356	c.272C>T	c.(271-273)TCA>TTA	p.S91L		NM_033085	NP_149076	Q969F0	FATE1_HUMAN	fetal and adult testis expressed transcript	91						endoplasmic reticulum|integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					CTGAGAGAATCAGGCCATGGG	0.542													22	28					0	0	0.004656	0	0
GABRA3	2556	broad.mit.edu	37	X	151514098	151514098	+	Missense_Mutation	SNP	G	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:151514098G>A	uc010ntk.1	-	3	457	c.217C>T	c.(217-219)CGT>TGT	p.R73C		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	73	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TCCAGAAGACGATCCAAGATT	0.473													31	18					0	0	0.002445	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870087	151870087	+	Silent	SNP	G	A	A	rs79585035		TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:151870087G>A	uc004ffq.1	+	3	971	c.777G>A	c.(775-777)CGG>CGA	p.R259R	MAGEA6_uc004ffr.1_Silent_p.R259R|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	259	MAGE.						protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					TGGAGTACCGGCAGGTCCCCG	0.522													65	58					0	0	0.003610	0	0
AGAP4	119016	broad.mit.edu	37	10	46342668	46342688	+	In_Frame_Del	DEL	GCTCCTGCCATCCTGTCCCCA	-	-			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr10:46342668_46342688delGCTCCTGCCATCCTGTCCCCA	uc001jcx.3	-	1	234_254	c.108_128delTGGGGACAGGATGGCAGGAGC	c.(106-129)GCTGGGGACAGGATGGCAGGAGCG>GCG	p.36_43AGDRMAGA>A	AGAP4_uc010qfl.1_In_Frame_Del_p.36_43AGDRMAGA>A|AGAP4_uc001jcy.3_5'UTR	NM_133446	NP_597703	Q96P64	AGAP4_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	36_43					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			ovary(1)	1						AGCCATGGGCGCTCCTGCCATCCTGTCCCCAGCTCCTGCCT	0.588													4	5	---	---	---	---					
MLL	4297	broad.mit.edu	37	11	118344862	118344877	+	Frame_Shift_Del	DEL	TAGCACTGTTAAACAT	-	-			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr11:118344862_118344877delTAGCACTGTTAAACAT	uc001pta.2	+	3	3011_3026	c.2988_3003delTAGCACTGTTAAACAT	c.(2986-3003)TCTAGCACTGTTAAACATfs	p.S996fs	MLL_uc001ptb.2_Frame_Shift_Del_p.S996fs|MLL_uc001psz.1_Frame_Shift_Del_p.S1029fs|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	996_1001					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CTCCTTCATCTAGCACTGTTAAACATTCCACTTCCT	0.505			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								15	89	---	---	---	---					
KDM2B	84678	broad.mit.edu	37	12	121986849	121986850	+	Frame_Shift_Ins	INS	-	CTGGA	CTGGA			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr12:121986849_121986850insCTGGA	uc001uat.2	-	6	719_720	c.615_616insTCCAG	c.(613-618)CAGCATfs	p.Q205fs	KDM2B_uc001uas.2_Frame_Shift_Ins_p.Q174fs|KDM2B_uc001uau.2_Frame_Shift_Ins_p.Q88fs|KDM2B_uc001uav.3_Frame_Shift_Ins_p.Q205fs	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	205_206	JmjC.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						TCCTTCAGATGCTGGGGCCACA	0.550													12	108	---	---	---	---					
POM121	9883	broad.mit.edu	37	7	72413723	72413724	+	In_Frame_Ins	INS	-	CTC	CTC	rs148686669	byFrequency	TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chr7:72413723_72413724insCTC	uc003twk.2	+	11	3191_3192	c.3191_3192insCTC	c.(3190-3192)TTC>TTCTCC	p.1064_1065insS	POM121_uc003twj.2_In_Frame_Ins_p.799_800insS|POM121_uc010lam.1_In_Frame_Ins_p.799_800insS	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1064_1065	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				ACTGCTGTCTTCTTCGGTGCAG	0.663													9	79	---	---	---	---					
ZFX	7543	broad.mit.edu	37	X	24225549	24225550	+	Frame_Shift_Ins	INS	-	A	A			TCGA-FS-A1ZW-06A-12D-A197-08	TCGA-FS-A1ZW-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	490fe6c8-d3e9-4713-a48b-cdd7496b37a7	b6aea399-b2ad-4f01-8a64-0539f2b49dd2	g.chrX:24225549_24225550insA	uc004dbf.2	+	5	1011_1012	c.753_754insA	c.(751-756)ATCAAGfs	p.I251fs	ZFX_uc004dbd.1_Frame_Shift_Ins_p.I251fs|ZFX_uc010nfx.1_Frame_Shift_Ins_p.I22fs|ZFX_uc004dbe.2_Frame_Shift_Ins_p.I251fs|ZFX_uc011mjv.1_Frame_Shift_Ins_p.I290fs|ZFX_uc010nfy.1_Intron|ZFX_uc010nfz.2_5'Flank	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	251_252					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						CTGAGGTCATCAAGGTGTACAT	0.416													55	34	---	---	---	---					
