Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CLCN6	1185	broad.mit.edu	37	1	11887244	11887244	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:11887244C>T	uc001ate.3	+	10	919	c.806C>T	c.(805-807)TCG>TTG	p.S269L	CLCN6_uc009vnf.1_Silent_p.F272F|CLCN6_uc009vng.1_Silent_p.F260F|CLCN6_uc009vnh.1_Missense_Mutation_p.S269L|CLCN6_uc010oat.1_5'UTR|CLCN6_uc010oau.1_Missense_Mutation_p.S247L	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	269					cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		GAGGAGGGTTCGTCCTTCTGG	0.552													9	38					0	0	1	0	0
CLCNKB	1188	broad.mit.edu	37	1	16378205	16378205	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:16378205G>A	uc001axw.3	+	14	1378	c.1298G>A	c.(1297-1299)GGA>GAA	p.G433E	FAM131C_uc010obz.1_Intron|CLCNKB_uc001axx.3_Missense_Mutation_p.G433E|CLCNKB_uc001axy.3_Missense_Mutation_p.G264E	NM_000085	NP_000076	P51801	CLCKB_HUMAN	chloride channel Kb isoform 1	433	Helical; (Potential).				excretion	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			skin(1)	1		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Colorectal(212;8.04e-08)|COAD - Colon adenocarcinoma(227;5.46e-06)|BRCA - Breast invasive adenocarcinoma(304;9.02e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(313;0.00655)|READ - Rectum adenocarcinoma(331;0.0649)		CTGTGGCCAGGAGCTGCTATC	0.622													35	94					0	0	1	0	0
ATP13A2	23400	broad.mit.edu	37	1	17326973	17326973	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:17326973G>A	uc001baa.2	-	9	952	c.762C>T	c.(760-762)GAC>GAT	p.D254D	ATP13A2_uc001bab.2_Silent_p.D249D|ATP13A2_uc001bac.2_Silent_p.D249D|ATP13A2_uc009vpa.1_5'Flank|ATP13A2_uc001bad.1_5'UTR	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	254	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		AGTAGTAGTGGTCAGCCAGCC	0.617													19	15					0	0	1	0	0
PADI4	23569	broad.mit.edu	37	1	17672607	17672607	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:17672607G>A	uc001baj.2	+	9	1048	c.1020G>A	c.(1018-1020)GAG>GAA	p.E340E	PADI4_uc009vpc.2_Silent_p.E340E	NM_012387	NP_036519	Q9UM07	PADI4_HUMAN	peptidyl arginine deiminase, type IV	340					chromatin modification|peptidyl-citrulline biosynthetic process from peptidyl-arginine|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			ovary(1)|skin(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000338)|Lung NSC(340;0.00042)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00537)|BRCA - Breast invasive adenocarcinoma(304;8.54e-06)|COAD - Colon adenocarcinoma(227;1.33e-05)|Kidney(64;0.000223)|KIRC - Kidney renal clear cell carcinoma(64;0.00313)|STAD - Stomach adenocarcinoma(196;0.00707)|READ - Rectum adenocarcinoma(331;0.0689)|Lung(427;0.199)	L-Citrulline(DB00155)	GCCCTGAGGAGGAGAACATGG	0.552													19	34					0	0	1	0	0
KDM1A	23028	broad.mit.edu	37	1	23381647	23381648	+	Silent	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:23381647_23381648CC>TT	uc001bgi.2	+	5	965_966	c.816_817CC>TT	c.(814-819)CCCCTA>CCTTTA	p.272_273PL>PL	KDM1A_uc001bgj.2_Silent_p.292_293PL>PL	NM_015013	NP_055828	O60341	KDM1A_HUMAN	lysine-specific histone demethylase 1 isoform b	272_273	SWIRM.				blood coagulation|muscle cell development|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin	androgen receptor binding|chromatin binding|enzyme binding|flavin adenine dinucleotide binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-K9 specific)|ligand-dependent nuclear receptor transcription coactivator activity|MyoD binding|oxidoreductase activity|p53 binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2						GGATAAAACCCCTACCAAGTAA	0.376													83	103					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	33990587	33990587	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:33990587C>T	uc001bxn.1	-	65	9888	c.9859G>A	c.(9859-9861)GGG>AGG	p.G3287R	CSMD2_uc001bxm.1_Missense_Mutation_p.G3431R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	3287	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCTTCTTCCCCTGGTATTCA	0.512													79	108					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34080130	34080130	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:34080130C>T	uc001bxn.1	-	40	6016	c.5987G>A	c.(5986-5988)TGG>TAG	p.W1996*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.W2036*|CSMD2_uc001bxo.1_Nonsense_Mutation_p.W909*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1996	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCTATTTTCCAGGAGCAGTC	0.433													12	17					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34401533	34401533	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:34401533C>T	uc001bxn.1	-	4	449	c.420G>A	c.(418-420)GGG>GGA	p.G140G	CSMD2_uc001bxm.1_Silent_p.G180G	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	140	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TCCCTGGGTTCCCACATGTGT	0.597													17	57					0	0	1	0	0
MACF1	23499	broad.mit.edu	37	1	39788335	39788336	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:39788335_39788336CC>TT	uc010ois.1	+	33	4305_4306	c.4100_4101CC>TT	c.(4099-4101)TCC>TTT	p.S1367F	MACF1_uc001cda.1_Missense_Mutation_p.S1275F|MACF1_uc001cdc.1_Missense_Mutation_p.S454F|MACF1_uc009vvq.1_Missense_Mutation_p.S424F|MACF1_uc001cdb.1_Missense_Mutation_p.S454F	NM_012090	NP_036222	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	1367					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CAGCAGAAATCCCCTGGCAAGC	0.47													32	106					0	0	1	0	0
HIVEP3	59269	broad.mit.edu	37	1	41978972	41978972	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:41978972C>T	uc001cgz.3	-	8	7133	c.5920G>A	c.(5920-5922)GAA>AAA	p.E1974K	HIVEP3_uc001cha.3_Missense_Mutation_p.E1974K|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1974					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CTGCCTGCTTCTTTGCTTGGG	0.617													40	67					0	0	1	0	0
ERMAP	114625	broad.mit.edu	37	1	43300731	43300731	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:43300731C>T	uc001cic.1	+	5	726	c.456C>T	c.(454-456)TCC>TCT	p.S152S	ERMAP_uc010ojw.1_Silent_p.S213S|ERMAP_uc001cid.1_RNA|ERMAP_uc001cie.1_Silent_p.S152S|ERMAP_uc001cif.1_Silent_p.S62S	NM_001017922	NP_001017922	Q96PL5	ERMAP_HUMAN	erythroblast membrane-associated protein	152	Extracellular (Potential).		Missing (in Sc-3 allele).			integral to membrane|plasma membrane				ovary(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GGAGTCTCTCCCCCTCAGCAG	0.537													30	74					0	0	1	0	0
MED8	112950	broad.mit.edu	37	1	43853204	43853204	+	Silent	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:43853204C>G	uc001cjg.3	-	3	288	c.240G>C	c.(238-240)GTG>GTC	p.V80V	MED8_uc001cje.1_Silent_p.V80V|MED8_uc001cjf.3_5'UTR|C1orf84_uc001cjh.2_5'Flank|C1orf84_uc001cji.1_5'Flank|KIAA0467_uc009vws.1_5'Flank	NM_201542	NP_963836	Q96G25	MED8_HUMAN	mediator complex subunit 8 isoform 1	80					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CTGGAGACAACACCAGAGGAA	0.423													37	28					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82416062	82416062	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:82416062C>T	uc001dit.3	+	7	1569	c.1388C>T	c.(1387-1389)CCC>CTC	p.P463L	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.P463L|LPHN2_uc001div.2_Missense_Mutation_p.P463L|LPHN2_uc009wcd.2_Missense_Mutation_p.P463L|LPHN2_uc001diw.2_Missense_Mutation_p.P34L	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	463	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		AATATTTTTCCCCTGCCAGAG	0.458													23	29					0	0	1	0	0
CLCA4	22802	broad.mit.edu	37	1	87029358	87029358	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:87029358C>T	uc009wcs.2	+	4	507	c.463C>T	c.(463-465)CAT>TAT	p.H155Y	CLCA4_uc009wct.2_Intron|CLCA4_uc009wcu.2_Intron	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	155						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		ACTGTTTGTCCATGAGTGGGC	0.398													16	46					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89607244	89607244	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:89607244C>T	uc001dna.2	-	9	1592	c.1453G>A	c.(1453-1455)GAG>AAG	p.E485K	GBP2_uc001dmy.1_Intron	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	485						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		ATGGCCTTCTCTCCAGCAGTG	0.507													49	57					0	0	1	0	0
GBP7	388646	broad.mit.edu	37	1	89607329	89607329	+	Silent	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:89607329T>G	uc001dna.2	-	9	1507	c.1368A>C	c.(1366-1368)GCA>GCC	p.A456A	GBP2_uc001dmy.1_Intron	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	456						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		GGACCTCGTCTGCCTGAAGAA	0.483													20	61					0	0	1	0	0
COL11A1	1301	broad.mit.edu	37	1	103354185	103354185	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:103354185C>T	uc001dul.2	-	62	4874	c.4556G>A	c.(4555-4557)GGA>GAA	p.G1519E	COL11A1_uc001duk.2_Missense_Mutation_p.G715E|COL11A1_uc001dum.2_Missense_Mutation_p.G1531E|COL11A1_uc001dun.2_Missense_Mutation_p.G1480E|COL11A1_uc009weh.2_Missense_Mutation_p.G1403E	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1519	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		GCCAGCGGGTCCCTGTTAGAA	0.413													12	42					0	0	1	0	0
CHIA	27159	broad.mit.edu	37	1	111857955	111857955	+	Silent	SNP	C	T	T	rs41282498		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:111857955C>T	uc001eas.2	+	6	481	c.378C>T	c.(376-378)TTC>TTT	p.F126F	CHIA_uc001ear.2_Silent_p.F18F|CHIA_uc001eaq.2_Silent_p.F18F|CHIA_uc009wgc.2_Silent_p.F18F|CHIA_uc001eat.2_Intron|CHIA_uc001eav.2_5'UTR|CHIA_uc001eau.2_Intron|CHIA_uc009wgd.2_Intron	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	126					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		TCATCAAATTCCTGCGCCAGT	0.547													88	80					0	0	1	0	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			78	117					2.17451e-35	2.23159e-35	1	1	0
HFE2	148738	broad.mit.edu	37	1	145415587	145415587	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:145415587C>T	uc001eni.2	+	3	731	c.406C>T	c.(406-408)CCA>TCA	p.P136S	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Missense_Mutation_p.P23S|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	136					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ccccgcccTTCCAGGCGCGGG	0.572													11	18					0	0	1	0	0
PLEKHO1	51177	broad.mit.edu	37	1	150128401	150128401	+	Splice_Site	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:150128401G>A	uc001ett.2	+	3	596	c.318_splice	c.e3+1	p.T106_splice	PLEKHO1_uc001etr.2_Splice_Site|PLEKHO1_uc001ets.2_Splice_Site|PLEKHO1_uc001etu.2_Splice_Site	NM_016274	NP_057358	Q53GL0	PKHO1_HUMAN	pleckstrin homology domain containing, family O							cytoplasm|nucleus|plasma membrane				lung(1)	1	Lung NSC(24;7.78e-28)|Breast(34;0.00211)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)			CGGTAACACGGTATGTTTCTC	0.522													32	45					0	0	1	0	0
SPRR2D	6703	broad.mit.edu	37	1	153012733	153012733	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:153012733C>T	uc001fbb.2	-	2	150	c.90G>A	c.(88-90)CCG>CCA	p.P30P	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	30	3 X 9 AA tandem repeats of P-K-C-P-[EQ]- P-C-P-[PS].|2.				keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CAGGGCACTTCGGGGGTGGAC	0.617													37	128					0	0	1	0	0
CD1B	910	broad.mit.edu	37	1	158299161	158299162	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:158299161_158299162CC>TT	uc001frx.2	-	4	992_993	c.884_885GG>AA	c.(883-885)TGG>TAA	p.W295*	CD1B_uc001frw.2_Intron	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	295	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding	p.W295L(1)		ovary(2)	2	all_hematologic(112;0.0378)					ATTTCTTACTCCAGTAGAGGAT	0.554													15	52					0	0	1	0	0
OR10J1	26476	broad.mit.edu	37	1	159410378	159410378	+	Missense_Mutation	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:159410378C>G	uc010piv.1	+	1	830	c.830C>G	c.(829-831)ACC>AGC	p.T277S	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	277	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					TCAGAGAACACCAGAGAACAT	0.512													59	67					0	0	1	0	0
MYOC	4653	broad.mit.edu	37	1	171621186	171621186	+	Missense_Mutation	SNP	C	T	T	rs144579767		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:171621186C>T	uc001ghu.2	-	1	588	c.566G>A	c.(565-567)CGA>CAA	p.R189Q	MYOC_uc010pmk.1_Missense_Mutation_p.R131Q	NM_000261	NP_000252	Q99972	MYOC_HUMAN	myocilin precursor	189			R -> Q.		anatomical structure morphogenesis	cilium|extracellular space|rough endoplasmic reticulum	structural molecule activity			lung(1)	1	all_cancers(6;5.47e-10)|all_hematologic(923;0.088)|Acute lymphoblastic leukemia(37;0.181)					AGCAGTGTCTCGGGTCTGGGG	0.567													67	242					0	0	1	0	0
TNR	7143	broad.mit.edu	37	1	175365849	175365849	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:175365849G>A	uc001gkp.1	-	3	1152	c.1071C>T	c.(1069-1071)ATC>ATT	p.I357I	TNR_uc009wwu.1_Silent_p.I357I|TNR_uc010pmz.1_Intron	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	357	Fibronectin type-III 1.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCTGGTAAGAGATCACATATT	0.622													47	55					0	0	1	0	0
F13B	2165	broad.mit.edu	37	1	197032094	197032094	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:197032094T>C	uc001gtt.1	-	2	202	c.158A>G	c.(157-159)AAA>AGA	p.K53R		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	53	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TGACAATTTTTTGTCTATGCT	0.393													48	152					0	0	1	0	0
CHIT1	1118	broad.mit.edu	37	1	203198762	203198762	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:203198762C>T	uc001gzn.2	-	1	99	c.3G>A	c.(1-3)ATG>ATA	p.M1I	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_Intron|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Missense_Mutation_p.M11I	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	1					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						CAGACCGCACCATGATGCAGC	0.622													7	22					0	0	1	0	0
ATP2B4	493	broad.mit.edu	37	1	203708954	203708954	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:203708954C>T	uc001gzw.2	+	21	4474	c.3590C>T	c.(3589-3591)TCT>TTT	p.S1197F	ATP2B4_uc001gzv.2_3'UTR|ATP2B4_uc001gzx.2_Missense_Mutation_p.S264F|ATP2B4_uc009xar.2_3'UTR	NM_001684	NP_001675	P23634	AT2B4_HUMAN	plasma membrane calcium ATPase 4 isoform 4b	1233	Cytoplasmic (Potential).				ATP biosynthetic process|platelet activation	integral to plasma membrane	ATP binding|calcium-transporting ATPase activity|calmodulin binding|metal ion binding|protein binding			ovary(2)|skin(1)	3	all_cancers(21;0.071)|all_epithelial(62;0.228)		BRCA - Breast invasive adenocarcinoma(75;0.109)			TCGGACAGCTCTCTACAGAGC	0.458													37	26					0	0	1	0	0
CR1	1378	broad.mit.edu	37	1	207741239	207741239	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:207741239C>T	uc001hfy.2	+	17	2813	c.2673C>T	c.(2671-2673)CCC>CCT	p.P891P	CR1_uc009xcl.1_Silent_p.P441P|CR1_uc001hfx.2_Silent_p.P1341P|CR1_uc009xck.1_Silent_p.P441P	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	891	Extracellular (Potential).|Sushi 14.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity	p.P896P(1)		ovary(3)	3						AAGTCTTTCCCTTTGGAAAAG	0.468													58	178					0	0	1	0	0
KCNH1	3756	broad.mit.edu	37	1	210970866	210970866	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:210970866C>T	uc001hib.2	-	9	2069	c.1899G>A	c.(1897-1899)GAG>GAA	p.E633E	KCNH1_uc001hic.2_Silent_p.E606E	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	633	Cytoplasmic (Potential).|cNMP.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		TGGCCACCACCTCATCATCTT	0.557													56	67					0	0	1	0	0
USH2A	7399	broad.mit.edu	37	1	216591896	216591896	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:216591896C>T	uc001hku.1	-	3	998	c.611G>A	c.(610-612)GGG>GAG	p.G204E	USH2A_uc001hkv.2_Missense_Mutation_p.G204E	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	204	Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AAGAATTCTCCCCAGTGTCAT	0.343										HNSCC(13;0.011)			16	77					0	0	1	0	0
C1orf65	164127	broad.mit.edu	37	1	223567300	223567300	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:223567300C>T	uc001hoa.2	+	1	586	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	161										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GTGGCACATTCAGGGTAGAAA	0.667													13	11					0	0	1	0	0
LEFTY1	10637	broad.mit.edu	37	1	226074672	226074672	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:226074672G>A	uc001hpo.2	-	4	926	c.856C>T	c.(856-858)CCG>TCG	p.P286S	LEFTY1_uc010pvj.1_3'UTR	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	286					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					AGGAAGCCCGGGGGCTCCAGC	0.662													5	20					0	0	1	0	0
WNT9A	7483	broad.mit.edu	37	1	228109337	228109337	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:228109337C>T	uc001hri.2	-	4	1068	c.980G>A	c.(979-981)GGC>GAC	p.G327D		NM_003395	NP_003386	O14904	WNT9A_HUMAN	wingless-type MMTV integration site family,	327					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|cornea development in camera-type eye|embryonic arm morphogenesis|embryonic skeletal joint morphogenesis|endoderm development|iris morphogenesis|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|negative regulation of chondrocyte differentiation|neuron differentiation|positive regulation of smoothened signaling pathway|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding|signal transducer activity			central_nervous_system(1)|pancreas(1)	2		Prostate(94;0.0405)				TGTGTTATGGCCGCGGCCACA	0.657													8	36					0	0	1	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232538146	232538146	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:232538146G>A	uc001hvg.2	-	20	5172	c.5014C>T	c.(5014-5016)CTT>TTT	p.L1672F	SIPA1L2_uc001hvf.2_Missense_Mutation_p.L728F	NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	1672	Potential.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				ACCTTCCGAAGGTCGGTCTGG	0.398													24	25					0	0	1	0	0
OR2T11	127077	broad.mit.edu	37	1	248790366	248790366	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:248790366C>T	uc001ier.1	-	1	64	c.64G>A	c.(64-66)GGG>AGG	p.G22R		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	22	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AATACAATCCCGGCAGCCTCA	0.532													18	67					0	0	1	0	0
OLAH	55301	broad.mit.edu	37	10	15115107	15115107	+	Missense_Mutation	SNP	G	A	A	rs139895854		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:15115107G>A	uc001inu.2	+	8	931	c.677G>A	c.(676-678)GGA>GAA	p.G226E	ACBD7_uc010qby.1_Intron|OLAH_uc001int.2_Missense_Mutation_p.G279E	NM_001039702	NP_001034791	Q9NV23	SAST_HUMAN	oleoyl-ACP hydrolase isoform 2	226					fatty acid biosynthetic process		myristoyl-[acyl-carrier-protein] hydrolase activity|oleoyl-[acyl-carrier-protein] hydrolase activity|palmitoyl-[acyl-carrier-protein] hydrolase activity				0						GTAACCAGTGGAAATGCTAAA	0.353													13	55					0	0	1	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255812	15255812	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:15255812C>T	uc001iob.2	-	8	1782	c.1775G>A	c.(1774-1776)GGG>GAG	p.G592E		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	592	Cytoplasmic (Potential).			G -> R (in Ref. 4; AAH34232).		integral to membrane				ovary(2)|breast(1)|skin(1)	4						GGAGTGGTCCCCGGGGAGTTT	0.547													36	103					0	0	1	0	0
Unknown	0	broad.mit.edu	37	10	30998229	30998229	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:30998229C>T	uc010qdx.1	+	8	1317	c.775C>T	c.(775-777)CCC>TCC	p.P259S						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		TTTCAAAGATCCCGGAAGTTT	0.463													5	20					0	0	1	0	0
ZNF239	8187	broad.mit.edu	37	10	44052942	44052942	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:44052942G>A	uc001jaw.3	-	2	1239	c.586C>T	c.(586-588)CCA>TCA	p.P196S	ZNF239_uc001jax.3_Missense_Mutation_p.P196S|ZNF239_uc009xmj.2_Missense_Mutation_p.P196S|ZNF239_uc009xmk.2_Missense_Mutation_p.P196S	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TTCTCATATGGATGACCATCT	0.438													17	96					0	0	1	0	0
GPRIN2	9721	broad.mit.edu	37	10	46998916	46998916	+	Silent	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:46998916A>C	uc001jec.2	+	3	171	c.36A>C	c.(34-36)GCA>GCC	p.A12A	GPRIN2_uc010qfq.1_5'Flank	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	12											0						GTCCCTGGGCACCCCTGAGCC	0.662													14	130					0	0	1	0	0
PRKG1	5592	broad.mit.edu	37	10	54050045	54050045	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:54050045C>T	uc001jjm.2	+	17	2106	c.1912C>T	c.(1912-1914)CCA>TCA	p.P638S	PRKG1_uc001jjo.2_Missense_Mutation_p.P653S|PRKG1_uc009xow.1_Missense_Mutation_p.P356S|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	638	AGC-kinase C-terminal.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		TCCTATAATACCAAGTGTAAG	0.333													27	88					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61831691	61831691	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:61831691G>A	uc001jky.2	-	37	9140	c.8948C>T	c.(8947-8949)TCG>TTG	p.S2983L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2983					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGAAATGCCGACTGTTCACA	0.418													22	67					0	0	1	0	0
ANK3	288	broad.mit.edu	37	10	61847989	61847989	+	Silent	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:61847989T>C	uc001jky.2	-	29	3648	c.3456A>G	c.(3454-3456)GGA>GGG	p.G1152G	ANK3_uc001jkw.2_Silent_p.G286G|ANK3_uc009xpa.2_Silent_p.G286G|ANK3_uc001jkx.2_Silent_p.G330G|ANK3_uc010qih.1_Silent_p.G1153G|ANK3_uc001jkz.3_Silent_p.G1146G|ANK3_uc001jla.1_Silent_p.G218G|ANK3_uc001jlb.1_Silent_p.G670G	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1152					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGCTCAGAATTCCACCTTCAG	0.468													24	117					0	0	1	0	0
RHOBTB1	9886	broad.mit.edu	37	10	62645964	62645964	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:62645964C>T	uc001jli.2	-	8	1919	c.1481G>A	c.(1480-1482)GGA>GAA	p.G494E	RHOBTB1_uc001jlh.2_Missense_Mutation_p.G494E|RHOBTB1_uc001jlj.2_Missense_Mutation_p.G494E|RHOBTB1_uc001jlk.2_Missense_Mutation_p.G494E|RHOBTB1_uc009xpe.1_Missense_Mutation_p.G432E|RHOBTB1_uc001jll.2_Missense_Mutation_p.G244E	NM_014836	NP_055651	O94844	RHBT1_HUMAN	Rho-related BTB domain containing 1	494	BTB 2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding			upper_aerodigestive_tract(1)	1	Prostate(12;0.0112)					ACTGATGGCTCCATCGTCCAA	0.522													30	57					0	0	1	0	0
CTNNA3	29119	broad.mit.edu	37	10	68940116	68940116	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:68940116G>A	uc009xpn.1	-	7	1129	c.1006C>T	c.(1006-1008)CGC>TGC	p.R336C	CTNNA3_uc001jmw.2_Missense_Mutation_p.R336C|CTNNA3_uc001jmx.3_Missense_Mutation_p.R336C|CTNNA3_uc009xpo.1_Missense_Mutation_p.R196C|CTNNA3_uc001jna.2_Missense_Mutation_p.R348C	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	336	Potential.				cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity	p.R336C(1)		skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						AGAGCCTGGCGAATGGCGTTG	0.512													19	52					0	0	1	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74700940	74700940	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:74700940G>A	uc001jtf.1	-	3	520	c.453C>T	c.(451-453)GTC>GTT	p.V151V	PLA2G12B_uc009xqt.1_Silent_p.V61V|PLA2G12B_uc010qjz.1_Silent_p.V151V	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	151					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					CCACTTTGGAGACAAAGCCCA	0.498													29	90					0	0	1	0	0
MBL1P	8512	broad.mit.edu	37	10	81680768	81680768	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:81680768G>A	uc001kbf.2	+	4		c.611G>A			MBL1P_uc001kbg.1_RNA					Homo sapiens mannose-binding protein-A pseudogene (MBL1P1) mRNA sequence.												0						GGAAACACAGGGACTTCTGGA	0.597													5	11					0	0	1	0	0
LIPN	643418	broad.mit.edu	37	10	90528662	90528662	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:90528662C>T	uc010qmw.1	+	5	649	c.649C>T	c.(649-651)CTA>TTA	p.L217L		NM_001102469	NP_001095939	Q5VXI9	LIPN_HUMAN	lipase-like, ab-hydrolase domain containing 4	217					lipid catabolic process	extracellular region	hydrolase activity				0		Colorectal(252;0.0161)		Colorectal(12;4.83e-05)|COAD - Colon adenocarcinoma(12;6.5e-05)		CAGGTTTTTTCTACTTCCAAA	0.368													13	55					0	0	1	0	0
PDE6C	5146	broad.mit.edu	37	10	95372700	95372700	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:95372700G>A	uc001kiu.3	+	1	356	c.218G>A	c.(217-219)GGG>GAG	p.G73E		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	73					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				CAGGAGGAGGGGGGCACCCCA	0.672													10	38					0	0	1	0	0
PLCE1	51196	broad.mit.edu	37	10	95792002	95792002	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:95792002G>A	uc001kjk.2	+	2	1833	c.1199G>A	c.(1198-1200)TGG>TAG	p.W400*	PLCE1_uc010qnx.1_Nonsense_Mutation_p.W400*	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	400					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				GAAGCCCAGTGGTATCCTGTA	0.393													16	49					0	0	1	0	0
C10orf129	142827	broad.mit.edu	37	10	96971721	96971721	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:96971721G>A	uc001kke.2	+	6	967	c.842G>A	c.(841-843)GGA>GAA	p.G281E	C10orf129_uc009xuu.1_Missense_Mutation_p.G191E	NM_207321	NP_997204	Q6P461	ACSM6_HUMAN	acyl-coenzyme A synthetase ACSM6, mitochondrial	281					fatty acid metabolic process	mitochondrion	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding				0		Colorectal(252;0.083)		Epithelial(162;1.64e-06)|all cancers(201;3.71e-05)		GCTGTCTTGGGAACTTGGTTC	0.483													18	60					0	0	1	0	0
ENTPD1	953	broad.mit.edu	37	10	97605259	97605259	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:97605259G>A	uc001klh.3	+	6	1043	c.719G>A	c.(718-720)CGC>CAC	p.R240H	ENTPD1_uc001kle.1_Missense_Mutation_p.R247H|ENTPD1_uc001kli.3_Missense_Mutation_p.R247H|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.R252H|ENTPD1_uc010qok.1_Missense_Mutation_p.R132H|ENTPD1_uc010qol.1_Missense_Mutation_p.R132H|ENTPD1_uc010qom.1_Missense_Mutation_p.R240H|ENTPD1_uc010qon.1_Missense_Mutation_p.R102H|ENTPD1_uc009xva.2_Missense_Mutation_p.R102H|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	240	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		CTGCAATTTCGCCTCTATGGC	0.488													27	115					0	0	1	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98388206	98388206	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:98388206C>T	uc001kmq.2	-	9	1548	c.1420G>A	c.(1420-1422)GAT>AAT	p.D474N	PIK3AP1_uc001kmo.2_Missense_Mutation_p.D73N|PIK3AP1_uc001kmp.2_Missense_Mutation_p.D296N	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	474						cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GAGAAACCATCTCCAGGGATT	0.443													50	169					0	0	1	0	0
GOT1	2805	broad.mit.edu	37	10	101162412	101162412	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:101162412C>T	uc001kpr.2	-	8	1235	c.1027G>A	c.(1027-1029)GAA>AAA	p.E343K	GOT1_uc009xwh.2_RNA|GOT1_uc001kpq.1_Missense_Mutation_p.E56K	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	343					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TTGAGGGCTTCTAGTCGTGCC	0.517													23	54					0	0	1	0	0
GOT1	2805	broad.mit.edu	37	10	101166509	101166509	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:101166509G>A	uc001kpr.2	-	3	606	c.398C>T	c.(397-399)CCT>CTT	p.P133L	GOT1_uc009xwh.2_RNA|GOT1_uc009xwi.2_3'UTR|GOT1_uc001kpq.1_5'UTR	NM_002079	NP_002070	P17174	AATC_HUMAN	aspartate aminotransferase 1	133					aspartate catabolic process|cellular response to insulin stimulus|gluconeogenesis|response to glucocorticoid stimulus	cytosol	L-aspartate:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding				0		Ovarian(717;0.028)|Colorectal(252;0.234)		Epithelial(162;4.76e-10)|all cancers(201;3.84e-08)	L-Aspartic Acid(DB00128)|L-Cysteine(DB00151)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CACATAGACAGGTGTGTTCTT	0.473													9	35					0	0	1	0	0
ABCC2	1244	broad.mit.edu	37	10	101557015	101557016	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:101557015_101557016CC>TT	uc001kqf.2	+	7	933_934	c.794_795CC>TT	c.(793-795)TCC>TTT	p.S265F		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	265	Cytoplasmic (By similarity).					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	GAGAAGAGCTCCCagcagaact	0.426													9	36					0	0	1	0	0
PKD2L1	9033	broad.mit.edu	37	10	102059467	102059467	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:102059467C>T	uc001kqx.1	-	3	741	c.358G>A	c.(358-360)GGA>AGA	p.G120R	PKD2L1_uc009xwm.1_Missense_Mutation_p.G73R	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	120	Helical; (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding	p.G120V(1)		ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		CTTGTCATTCCATAGGTCACT	0.483													25	96					0	0	1	0	0
KAZALD1	81621	broad.mit.edu	37	10	102822604	102822604	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:102822604C>T	uc001ksr.2	+	2	1180	c.255C>T	c.(253-255)CTC>CTT	p.L85L	KAZALD1_uc001kss.3_RNA|KAZALD1_uc001kst.1_Silent_p.L85L	NM_030929	NP_112191	Q96I82	KAZD1_HUMAN	Kazal-type serine peptidase inhibitor domain 1	85	IGFBP N-terminal.				cell differentiation|multicellular organismal development|ossification|regulation of cell growth		insulin-like growth factor binding				0				Epithelial(162;6.21e-09)|all cancers(201;3.14e-07)		GCGCCAACCTCGAGGGCCAGC	0.736													8	23					0	0	1	0	0
POLL	27343	broad.mit.edu	37	10	103340153	103340153	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:103340153G>A	uc001ktg.1	-	7	1981	c.1215C>T	c.(1213-1215)GCC>GCT	p.A405A	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_Silent_p.A78A|POLL_uc001kte.1_Silent_p.A97A|POLL_uc001kth.1_Silent_p.A130A|POLL_uc001kti.1_Silent_p.A405A|POLL_uc001ktj.1_Silent_p.A405A|POLL_uc001ktf.2_Silent_p.A313A|POLL_uc001ktk.1_Silent_p.A144A|POLL_uc010qqa.1_Silent_p.A144A|POLL_uc010qqb.1_RNA|POLL_uc001ktm.2_Silent_p.A405A|POLL_uc001ktl.2_Silent_p.A317A|POLL_uc010qqc.1_Silent_p.A97A	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	405					DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		CAGAGTTAAAGGCCTGGGCTG	0.607								DNA_polymerases_(catalytic_subunits)					11	53					0	0	1	0	0
PPRC1	23082	broad.mit.edu	37	10	103901026	103901026	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:103901026C>T	uc001kum.2	+	5	2800	c.2761C>T	c.(2761-2763)CCA>TCA	p.P921S	PPRC1_uc001kun.2_Missense_Mutation_p.P801S|PPRC1_uc010qqj.1_Missense_Mutation_p.P921S|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	921	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		TGCCCCCTTGCCATCCTGGCC	0.592													16	72					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124380618	124380618	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:124380618G>A	uc001lgk.1	+	41	5049	c.4943G>A	c.(4942-4944)AGG>AAG	p.R1648K	DMBT1_uc001lgl.1_Missense_Mutation_p.R1638K|DMBT1_uc001lgm.1_Missense_Mutation_p.R1020K|DMBT1_uc009xzz.1_Missense_Mutation_p.R1648K|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Missense_Mutation_p.R351K|DMBT1_uc009yac.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1648	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGAGGTGACAGGTGTCGAGGC	0.532													96	279					0	0	1	0	0
ECHS1	1892	broad.mit.edu	37	10	135184102	135184102	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr10:135184102C>T	uc001lmu.2	-	2	319	c.248G>A	c.(247-249)GGG>GAG	p.G83E		NM_004092	NP_004083	P30084	ECHM_HUMAN	mitochondrial short-chain enoyl-coenzyme A	83					fatty acid beta-oxidation	mitochondrial matrix	enoyl-CoA hydratase activity|protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;1.62e-06)|OV - Ovarian serous cystadenocarcinoma(35;5.75e-06)|Epithelial(32;7.58e-06)		GACAATGGCCCCCACGGCCGG	0.627													9	19					0	0	1	0	0
PTDSS2	81490	broad.mit.edu	37	11	489424	489424	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:489424C>T	uc001lpj.2	+	9	1055	c.879C>T	c.(877-879)TTC>TTT	p.F293F		NM_030783	NP_110410	Q9BVG9	PTSS2_HUMAN	phosphatidylserine synthase 2	293	Cytoplasmic (Potential).					integral to membrane					0		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;2.76e-26)|Epithelial(43;2.56e-25)|OV - Ovarian serous cystadenocarcinoma(40;7.54e-20)|BRCA - Breast invasive adenocarcinoma(625;8.76e-05)|Lung(200;0.0407)|LUSC - Lung squamous cell carcinoma(625;0.0735)	Phosphatidylserine(DB00144)	GGATCGCCTTCCAGTTCACGC	0.652													8	28					0	0	1	0	0
CDHR5	53841	broad.mit.edu	37	11	619080	619080	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:619080C>T	uc001lqj.2	-	13	1584	c.1479G>A	c.(1477-1479)ACG>ACA	p.T493T	CDHR5_uc001lqk.2_Intron|CDHR5_uc009ycc.2_Silent_p.T327T|CDHR5_uc009ycd.2_Silent_p.T487T|CDHR5_uc001lql.2_Silent_p.T493T	NM_021924	NP_068743	Q9HBB8	CDHR5_HUMAN	mucin and cadherin-like isoform 1	493	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						CAGAGCTGGTCGTGGAGGGTC	0.677													12	32					0	0	1	0	0
MUC2	4583	broad.mit.edu	37	11	1083140	1083140	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:1083140C>T	uc001lsx.1	+	16	2067	c.2040C>T	c.(2038-2040)TCC>TCT	p.S680S		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	680						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CCTGCCGCTCCCTCTCCGAGG	0.657													6	17					0	0	1	0	0
MUC5B	727897	broad.mit.edu	37	11	1271501	1271501	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:1271501G>A	uc009ycr.1	+	51	14936	c.14810G>A	c.(14809-14811)GGA>GAA	p.G4937E	MUC5B_uc001ltb.2_Missense_Mutation_p.G4467E	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	4464	23 X approximate tandem repeats, Ser/Thr- rich.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GTGCCCACCGGATCCACGGCC	0.672													29	117					0	0	1	0	0
OR51V1	283111	broad.mit.edu	37	11	5221451	5221451	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:5221451C>T	uc010qyz.1	-	1	480	c.480G>A	c.(478-480)AGG>AGA	p.R160R		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	160	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGAAAAAACTCCTACCTATTA	0.393													22	88					0	0	1	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537407	5537408	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:5537407_5537408CC>TT	uc001maz.3	-	1	549_550	c.264_265GG>AA	c.(262-267)AGGGGC>AGAAGC	p.G89S	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	89	Ubiquitin-like.									large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		TCCATGATGCCCCTCTGGCTCA	0.53													10	79					0	0	1	0	0
OR52E4	390081	broad.mit.edu	37	11	5905798	5905798	+	Silent	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:5905798A>G	uc010qzs.1	+	1	276	c.276A>G	c.(274-276)CAA>CAG	p.Q92Q	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	92	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCAACCTCCAAGAGATCAGCT	0.463													26	104					0	0	1	0	0
OR10A5	144124	broad.mit.edu	37	11	6867026	6867026	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:6867026T>C	uc001met.1	+	1	113	c.113T>C	c.(112-114)GTT>GCT	p.V38A		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATCTATTTGGTTACTCTGAAG	0.423													80	226					0	0	1	0	0
PAX6	5080	broad.mit.edu	37	11	31816322	31816322	+	Missense_Mutation	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:31816322G>T	uc001mtd.3	-	7	1428	c.538C>A	c.(538-540)CAG>AAG	p.Q180K	PAX6_uc001mte.3_Missense_Mutation_p.Q180K|PAX6_uc001mtg.3_Missense_Mutation_p.Q194K|PAX6_uc001mtf.3_Missense_Mutation_p.Q180K|PAX6_uc001mth.3_Missense_Mutation_p.Q180K|PAX6_uc009yjr.2_Missense_Mutation_p.Q180K	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	180	Gln/Gly-rich.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					CCTCCTTCCTGTTGCTGGCAG	0.468									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				18	84					7.07596e-05	7.12149e-05	1	1	0
RAG2	5897	broad.mit.edu	37	11	36615273	36615273	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:36615273C>T	uc001mwv.3	-	2	634	c.446G>A	c.(445-447)GGG>GAG	p.G149E	C11orf74_uc010rfd.1_5'Flank|C11orf74_uc001mww.1_5'Flank|C11orf74_uc001mwx.1_5'Flank|C11orf74_uc001mwy.1_5'Flank|C11orf74_uc001mwz.1_5'Flank|C11orf74_uc010rfe.1_5'Flank	NM_000536	NP_000527	P55895	RAG2_HUMAN	recombination activating gene 2	149					chromatin modification|pre-B cell allelic exclusion|somatic diversification of immunoglobulins|T cell differentiation in thymus|V(D)J recombination	nucleus	chromatin binding|DNA binding|endonuclease activity|methylated histone residue binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-4,5-bisphosphate binding|zinc ion binding			skin(3)|ovary(1)|pancreas(1)	5	all_lung(20;0.226)	all_hematologic(20;0.00756)				CATACTTTTCCCTCGGCTGTA	0.453									Familial_Hemophagocytic_Lymphohistiocytosis				26	125					0	0	1	0	0
LOC440040	440040	broad.mit.edu	37	11	49598250	49598250	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:49598250C>T	uc010rhy.1	+	2	841	c.363C>T	c.(361-363)TCC>TCT	p.S121S	LOC440040_uc009ymb.2_Silent_p.S121S	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						GGCCTGGTTCCAGTTCTGTAG	0.498													5	36					0	0	1	0	0
OR4A5	81318	broad.mit.edu	37	11	51411750	51411750	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:51411750C>T	uc001nhi.1	-	1	646	c.646G>A	c.(646-648)GGA>AGA	p.G216R		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				AGGATGACTCCATAGGAGATT	0.448													23	79					0	0	1	0	0
OR4C6	219432	broad.mit.edu	37	11	55433330	55433330	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:55433330G>A	uc001nht.3	+	3	953	c.688G>A	c.(688-690)GGG>AGG	p.G230R	OR4C6_uc010rik.1_Missense_Mutation_p.G230R	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CAGCTCTAAAGGGCGGCACAA	0.493													22	103					0	0	1	0	0
OR5D13	390142	broad.mit.edu	37	11	55541282	55541282	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:55541282C>T	uc010ril.1	+	1	369	c.369C>T	c.(367-369)GAC>GAT	p.D123D		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	123	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				TGGCTTATGACCGTTTTGTGG	0.428													40	174					0	0	1	0	0
OR5D18	219438	broad.mit.edu	37	11	55587703	55587703	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:55587703C>T	uc010rin.1	+	1	598	c.598C>T	c.(598-600)CTA>TTA	p.L200L		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	200	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				CCAGTGGCTGCTATTCTTTCT	0.408													29	112					0	0	1	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798326	55798326	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:55798326C>T	uc010riw.1	+	1	432	c.432C>T	c.(430-432)TTC>TTT	p.F144F		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	144	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					GTGTCTGCTTCATTGTGTTGG	0.458													40	149					0	0	1	0	0
ZFP91	80829	broad.mit.edu	37	11	58347022	58347022	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:58347022G>A	uc001nmx.3	+	1	436	c.268G>A	c.(268-270)GAC>AAC	p.D90N	LPXN_uc010rkj.1_5'Flank|LPXN_uc010rkk.1_5'Flank|ZFP91_uc001nmy.3_Missense_Mutation_p.D90N|ZFP91-CNTF_uc010rkm.1_RNA	NM_053023	NP_444251	Q96JP5	ZFP91_HUMAN	zinc finger protein 91	90					activation of NF-kappaB-inducing kinase activity|protein K63-linked ubiquitination	nucleus	nucleic acid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				CAGGCCTCCCGACGTCCCCGG	0.592													3	6					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60696363	60696363	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:60696363G>A	uc001nqj.2	+	4	990	c.797G>A	c.(796-798)CGG>CAG	p.R266Q	TMEM132A_uc001nqi.2_Missense_Mutation_p.R266Q|TMEM132A_uc001nqk.2_Missense_Mutation_p.R279Q|TMEM132A_uc001nql.1_Missense_Mutation_p.R279Q	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	266	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						ATGCCAGTGCGGCCCGGCCAG	0.672													15	61					0	0	1	0	0
ROM1	6094	broad.mit.edu	37	11	62381081	62381081	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:62381081G>A	uc001ntv.2	+	1	869	c.328G>A	c.(328-330)GGT>AGT	p.G110S	EML3_uc001ntr.1_5'Flank|EML3_uc001nts.1_5'Flank|EML3_uc001ntt.1_5'Flank|EML3_uc001ntu.1_5'Flank|EML3_uc010rly.1_5'Flank|EML3_uc009yny.1_5'Flank	NM_000327	NP_000318	Q03395	ROM1_HUMAN	retinal outer segment membrane protein 1	110	Helical; (Potential).				cell adhesion|visual perception	integral to plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TGGCACGGCTGGTGGGGGGGG	0.682													13	18					0	0	1	0	0
DPP3	10072	broad.mit.edu	37	11	66254125	66254125	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:66254125C>T	uc001oig.1	+	4	537	c.475C>T	c.(475-477)CGA>TGA	p.R159*	DPP3_uc001oif.1_Nonsense_Mutation_p.R159*|DPP3_uc010rpe.1_Nonsense_Mutation_p.R148*	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	159					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						GCCAAGGCTTCGACACCTCGG	0.622													24	73					0	0	1	0	0
DHCR7	1717	broad.mit.edu	37	11	71152365	71152365	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:71152365G>A	uc001oqk.2	-	6	784	c.534C>T	c.(532-534)ATC>ATT	p.I178I	DHCR7_uc001oql.2_Silent_p.I178I	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	178	Helical; (Potential).				cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	ACAGCAGTGGGATCCAGTTGT	0.577									Smith-Lemli-Opitz_syndrome				18	59					0	0	1	0	0
INPPL1	3636	broad.mit.edu	37	11	71948210	71948210	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:71948210C>T	uc001osf.2	+	26	3069	c.2922C>T	c.(2920-2922)GCC>GCT	p.A974A	INPPL1_uc001osg.2_Silent_p.A732A	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	974	Pro-rich.				actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						GGGTGGCGGCCCCCCCACCCA	0.612													33	102					0	0	1	0	0
PAAF1	80227	broad.mit.edu	37	11	73620448	73620448	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:73620448C>T	uc001ouk.1	+	7	571	c.537C>T	c.(535-537)ATC>ATT	p.I179I	PAAF1_uc001oul.1_Silent_p.I162I|PAAF1_uc009ytx.1_RNA|PAAF1_uc001oum.1_Silent_p.I162I	NM_025155	NP_079431	Q9BRP4	PAAF1_HUMAN	proteasomal ATPase-associated factor 1	179	WD 3.				interspecies interaction between organisms	proteasome complex	protein binding			ovary(1)|skin(1)	2	Breast(11;7.42e-05)					TGCTAGGTATCCTGGATACAG	0.478													22	65					0	0	1	0	0
PPME1	51400	broad.mit.edu	37	11	73941314	73941314	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:73941314C>T	uc001ouw.2	+	6	522	c.423C>T	c.(421-423)GCC>GCT	p.A141A	PPME1_uc009yty.2_Silent_p.A11A|PPME1_uc001oux.2_5'Flank	NM_016147	NP_057231	Q9Y570	PPME1_HUMAN	protein phosphatase methylesterase 1	141					protein demethylation		carboxylesterase activity|protein C-terminal methylesterase activity|protein phosphatase 2A binding|protein phosphatase inhibitor activity|protein phosphatase type 2A regulator activity				0	Breast(11;3.29e-05)					TGGTTGAAGCCATGTATGGGG	0.448													29	121					0	0	1	0	0
DGAT2	84649	broad.mit.edu	37	11	75508220	75508220	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:75508220C>T	uc001oxa.2	+	6	911	c.652C>T	c.(652-654)CGG>TGG	p.R218W	DGAT2_uc001oxb.2_Missense_Mutation_p.R175W	NM_032564	NP_115953	Q96PD7	DGAT2_HUMAN	diacylglycerol O-acyltransferase 2	218	Cytoplasmic (Potential).				glycerol metabolic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	diacylglycerol O-acyltransferase activity				0	Ovarian(111;0.103)					CCCTGTCAGCCGGGACACCAT	0.552													31	127					0	0	1	0	0
RSF1	51773	broad.mit.edu	37	11	77451873	77451873	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:77451873G>A	uc001oyn.2	-	4	601	c.481C>T	c.(481-483)CTC>TTC	p.L161F		NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	161					CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			CAGTACATGAGGCCATCTTTG	0.398													20	65					0	0	1	0	0
NAALAD2	10003	broad.mit.edu	37	11	89885593	89885593	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:89885593G>A	uc001pdf.3	+	6	846	c.737G>A	c.(736-738)GGA>GAA	p.G246E	NAALAD2_uc009yvx.2_Missense_Mutation_p.G246E|NAALAD2_uc009yvy.2_Missense_Mutation_p.G246E|NAALAD2_uc001pdd.2_Missense_Mutation_p.G246E|NAALAD2_uc001pde.2_Missense_Mutation_p.G246E	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	246	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				GCCCAGAGAGGAAATGTGTTA	0.453													14	50					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92086801	92086801	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:92086801C>T	uc001pdj.3	+	1	1540	c.1523C>T	c.(1522-1524)ACC>ATC	p.T508I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	508	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGGTACATCACCTATAGTATC	0.398										TCGA Ovarian(4;0.039)			26	96					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92534542	92534542	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:92534542C>T	uc001pdj.3	+	9	8380	c.8363C>T	c.(8362-8364)CCC>CTC	p.P2788L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2788	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GCCACTATACCCCTGGACAAA	0.418										TCGA Ovarian(4;0.039)			10	43					0	0	1	0	0
PIWIL4	143689	broad.mit.edu	37	11	94322335	94322335	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:94322335G>A	uc001pfa.2	+	8	1174	c.963G>A	c.(961-963)AAG>AAA	p.K321K	PIWIL4_uc010rue.1_RNA|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	321	PAZ.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GGTCAGTGAAGCCCACACACA	0.388													9	72					0	0	1	0	0
PGR	5241	broad.mit.edu	37	11	100933480	100933480	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:100933480C>T	uc001pgh.2	-	4	2653	c.1910G>A	c.(1909-1911)CGA>CAA	p.R637Q	PGR_uc001pgg.2_Missense_Mutation_p.R18Q|PGR_uc001pgi.2_Intron|PGR_uc009yww.1_Intron|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	637	Nuclear receptor.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	TTTAAATTTTCGACCTACAGA	0.358													9	48					0	0	1	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103070049	103070049	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:103070049G>A	uc001pho.2	+	49	8076	c.7932G>A	c.(7930-7932)CTG>CTA	p.L2644L	DYNC2H1_uc001phn.1_Silent_p.L2644L|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2644	AAA 4 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		ATAGAGTGCTGAGTTTCCCTG	0.423													7	23					0	0	1	0	0
USP28	57646	broad.mit.edu	37	11	113675607	113675607	+	Missense_Mutation	SNP	A	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:113675607A>T	uc001poh.2	-	20	2595	c.2562T>A	c.(2560-2562)AAT>AAA	p.N854K	USP28_uc001pog.2_Missense_Mutation_p.N530K|USP28_uc010rwy.1_Missense_Mutation_p.N697K|USP28_uc001poi.2_Missense_Mutation_p.N177K	NM_020886	NP_065937	Q96RU2	UBP28_HUMAN	ubiquitin specific protease 28	854					cell proliferation|DNA damage checkpoint|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA repair|protein deubiquitination|response to ionizing radiation|ubiquitin-dependent protein catabolic process	nucleolus|nucleoplasm	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(2)|breast(2)|ovary(1)|large_intestine(1)|kidney(1)	7		all_cancers(61;3.74e-18)|all_epithelial(67;3.75e-11)|Melanoma(852;1.46e-05)|all_hematologic(158;4.65e-05)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|Prostate(24;0.0153)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.93e-06)|Epithelial(105;0.000122)|all cancers(92;0.00104)		CATAGCTAAGATTTTTATCTG	0.453													17	58					0	0	1	0	0
RBM7	10179	broad.mit.edu	37	11	114276477	114276477	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:114276477C>T	uc001pov.2	+	4	404	c.394C>T	c.(394-396)CAG>TAG	p.Q132*	RBM7_uc001pow.2_Nonsense_Mutation_p.Q133*|RBM7_uc001pox.2_Nonsense_Mutation_p.Q12*	NM_016090	NP_057174	Q9Y580	RBM7_HUMAN	RNA binding motif protein 7	132					meiosis		nucleotide binding|protein binding|RNA binding			ovary(2)	2		all_cancers(61;5.06e-12)|all_epithelial(67;5.3e-06)|all_hematologic(158;7.68e-05)|Acute lymphoblastic leukemia(157;0.000966)|Melanoma(852;0.00153)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Breast(348;0.0818)|Prostate(24;0.104)		BRCA - Breast invasive adenocarcinoma(274;2.56e-06)|Epithelial(105;4.17e-05)|all cancers(92;0.000348)		ACAGATAATTCAGAGATCTTT	0.294													8	50					0	0	1	0	0
DSCAML1	57453	broad.mit.edu	37	11	117303079	117303079	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:117303079C>T	uc001prh.1	-	30	5350	c.5348G>A	c.(5347-5349)CGG>CAG	p.R1783Q		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1723	Cytoplasmic (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GGTTCCTGGCCGGATGTCAGA	0.552													8	39					0	0	1	0	0
MPZL2	10205	broad.mit.edu	37	11	118130816	118130816	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:118130816C>T	uc001psn.2	-	4	678	c.537G>A	c.(535-537)CGG>CGA	p.R179R	MPZL2_uc001pso.2_Silent_p.R179R|MPZL2_uc001psp.1_Silent_p.R179R	NM_005797	NP_005788	O60487	MPZL2_HUMAN	myelin protein zero-like 2 precursor	179	Cytoplasmic (Potential).				anatomical structure morphogenesis|homophilic cell adhesion	cytoskeleton|integral to membrane				skin(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		ATCGCTTTTTCCGGTAATGCT	0.478													70	250					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120989063	120989063	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:120989063C>T	uc010rzo.1	+	6	839	c.839C>T	c.(838-840)ACC>ATC	p.T280I		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	280	VWFC.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TTGAACTGCACCGTCAAGTGC	0.423													13	63					0	0	1	0	0
TECTA	7007	broad.mit.edu	37	11	120998980	120998980	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:120998980G>A	uc010rzo.1	+	8	2294	c.2294G>A	c.(2293-2295)TGG>TAG	p.W765*		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	765	VWFD 2.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GGACCTGCTTGGCTGCGGGGA	0.592													19	51					0	0	1	0	0
SORL1	6653	broad.mit.edu	37	11	121477623	121477623	+	Missense_Mutation	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:121477623G>T	uc001pxx.2	+	36	5098	c.5018G>T	c.(5017-5019)TGG>TTG	p.W1673L	SORL1_uc010rzp.1_Missense_Mutation_p.W519L|SORL1_uc010rzq.1_Missense_Mutation_p.W288L	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1673	Extracellular (Potential).|Fibronectin type-III 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GTAGGCCACTGGGCTCCTCCC	0.517													43	125					1.8453e-21	1.89125e-21	1	1	0
OR10G4	390264	broad.mit.edu	37	11	123886368	123886368	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:123886368C>T	uc010sac.1	+	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TTGGAATCTTCCTGGTGGTTT	0.567													30	69					0	0	1	0	0
OR8B3	390271	broad.mit.edu	37	11	124266338	124266338	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:124266338G>A	uc010saj.1	-	1	910	c.910C>T	c.(910-912)CTG>TTG	p.L304L	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		ATTTTAATCAGAGCTTTCCTC	0.328													25	92					0	0	1	0	0
APLP2	334	broad.mit.edu	37	11	130013326	130013326	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:130013326G>A	uc010sby.1	+	18	2432	c.2275G>A	c.(2275-2277)GAG>AAG	p.E759K	APLP2_uc001qfp.2_Missense_Mutation_p.E747K|APLP2_uc001qfq.2_Missense_Mutation_p.E691K|APLP2_uc010sbz.1_Missense_Mutation_p.E547K|APLP2_uc001qfr.2_Missense_Mutation_p.E513K|APLP2_uc001qfs.2_Missense_Mutation_p.E518K|APLP2_uc001qfv.2_Missense_Mutation_p.E650K|APLP2_uc009zcv.2_Missense_Mutation_p.E107K	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	759	Cytoplasmic (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		CAAATACCTGGAGCAGATGCA	0.567													26	77					0	0	1	0	0
ZBTB44	29068	broad.mit.edu	37	11	130108498	130108498	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:130108498C>T	uc001qga.2	-	4	1502	c.1108G>A	c.(1108-1110)GAA>AAA	p.E370K	ZBTB44_uc001qgb.3_Missense_Mutation_p.E370K|ZBTB44_uc001qfx.2_RNA|ZBTB44_uc001qfz.2_Missense_Mutation_p.E370K	NM_014155	NP_054874	Q8NCP5	ZBT44_HUMAN	zinc finger and BTB domain containing 44	370					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0192)|Lung(977;0.235)		TGAACATTTTCCAATCTAAAA	0.393													5	28					0	0	1	0	0
NCAPD3	23310	broad.mit.edu	37	11	134047120	134047120	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr11:134047120G>A	uc001qhd.1	-	23	3621	c.3015C>T	c.(3013-3015)CTC>CTT	p.L1005L	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	1005	HEAT 4.				cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		GCACCTGCAAGAGATTGGTAA	0.458													21	57					0	0	1	0	0
SLC6A12	6539	broad.mit.edu	37	12	304399	304399	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:304399C>T	uc001qhz.2	-	14	1964	c.1421G>A	c.(1420-1422)TGG>TAG	p.W474*	SLC6A12_uc001qhx.2_Nonsense_Mutation_p.W131*|SLC6A12_uc001qhy.2_Nonsense_Mutation_p.W30*|SLC6A12_uc001qia.2_Nonsense_Mutation_p.W474*|SLC6A12_uc001qib.2_Nonsense_Mutation_p.W474*|SLC6A12_uc009zdh.1_Nonsense_Mutation_p.W474*	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	474	Helical; Name=10; (Potential).				cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			ACCATACACCCAGCTTATGCA	0.567													34	119					0	0	1	0	0
KCNA6	3742	broad.mit.edu	37	12	4919558	4919558	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:4919558C>T	uc001qng.2	+	1	1217	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	117						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TGGACATTTTCCTGGAGGAGA	0.672										HNSCC(72;0.22)			25	68					0	0	1	0	0
NTF3	4908	broad.mit.edu	37	12	5603549	5603549	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:5603549G>A	uc001qnl.3	+	1	252	c.169G>A	c.(169-171)GAA>AAA	p.E57K	NTF3_uc001qnk.3_Missense_Mutation_p.E70K	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	57					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						GGACGTTAAGGAAAATTACCA	0.527													24	88					0	0	1	0	0
VWF	7450	broad.mit.edu	37	12	6153610	6153610	+	Missense_Mutation	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:6153610C>A	uc001qnn.1	-	18	2539	c.2289G>T	c.(2287-2289)AGG>AGT	p.R763S	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	763					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AGGATAGGCTCCTTTTGCCTC	0.532													7	27					1.06961e-07	1.08487e-07	1	1	0
PLEKHG6	55200	broad.mit.edu	37	12	6421437	6421437	+	Silent	SNP	C	T	T	rs146528945	byFrequency	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:6421437C>T	uc001qnr.2	+	2	193	c.45C>T	c.(43-45)CTC>CTT	p.L15L	PLEKHG6_uc001qns.2_Silent_p.L15L|PLEKHG6_uc010sew.1_Silent_p.L15L|PLEKHG6_uc010sex.1_5'Flank	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	15					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						TCCAAGGACTCGTGGCCTCCC	0.587													20	76					0	0	1	0	0
ACSM4	341392	broad.mit.edu	37	12	7463275	7463275	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:7463275C>T	uc001qsx.1	+	3	553	c.553C>T	c.(553-555)CTT>TTT	p.L185F		NM_001080454	NP_001073923	P0C7M7	ACSM4_HUMAN	acyl-CoA synthetase medium-chain family member 4	185					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding				0						GTGTCCTGACCTTAAGACAAA	0.527													5	16					0	0	1	0	0
OLR1	4973	broad.mit.edu	37	12	10312595	10312595	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:10312595G>A	uc001qxo.1	-	6	820	c.706C>T	c.(706-708)CAG>TAG	p.Q236*	OLR1_uc010sgz.1_3'UTR|OLR1_uc010sha.1_3'UTR	NM_002543	NP_002534	P78380	OLR1_HUMAN	oxidized low density lipoprotein (lectin-like)	236	Extracellular (Potential).|C-type lectin.			SQ->AL: Impairs binding to acetylated LDL (AcLDL); when associated with A-240.	blood circulation|blood coagulation|inflammatory response|leukocyte migration|proteolysis	extracellular region|integral to plasma membrane|membrane fraction	sugar binding			ovary(1)	1						GGGTATGTCTGGGAGACAGCG	0.418													30	120					0	0	1	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906821	13906821	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:13906821C>T	uc001rbt.2	-	3	619	c.440G>A	c.(439-441)GGC>GAC	p.G147D		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	147	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AATTGATGGGCCAAACTGGAA	0.393													16	56					0	0	1	0	0
PTPRO	5800	broad.mit.edu	37	12	15734639	15734639	+	Silent	SNP	C	T	T	rs139672715		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:15734639C>T	uc001rcv.1	+	23	3333	c.3159C>T	c.(3157-3159)TTC>TTT	p.F1053F	PTPRO_uc001rcw.1_Silent_p.F1025F|PTPRO_uc001rcx.1_Silent_p.F242F|PTPRO_uc001rcy.1_Silent_p.F242F|PTPRO_uc001rcz.1_Silent_p.F214F|PTPRO_uc001rda.1_Silent_p.F214F	NM_030667	NP_109592	Q16827	PTPRO_HUMAN	receptor-type protein tyrosine phosphatase O	1053	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.					integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	9		Hepatocellular(102;0.244)				ACTGGCCATTCACGGAAGAAC	0.433													19	81					0	0	1	0	0
LMO3	55885	broad.mit.edu	37	12	16713473	16713473	+	Splice_Site	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:16713473C>T	uc001rdk.1	-	3	647	c.207_splice	c.e3-1	p.R69_splice	LMO3_uc001rdj.1_Splice_Site_p.R80_splice|LMO3_uc010shy.1_Splice_Site_p.R87_splice|LMO3_uc001rdl.1_Splice_Site_p.R69_splice|LMO3_uc009zii.1_Splice_Site|LMO3_uc010shz.1_Splice_Site_p.W91_splice|LMO3_uc001rdm.1_Splice_Site_p.R69_splice|LMO3_uc001rdo.1_Splice_Site|LMO3_uc001rdp.1_Splice_Site|LMO3_uc001rdn.1_Splice_Site_p.R69_splice|LMO3_uc009zij.1_Splice_Site|LMO3_uc009zik.1_Splice_Site	NM_018640	NP_061110	Q8TAP4	LMO3_HUMAN	LIM domain only 3						regulation of transcription, DNA-dependent|transcription, DNA-dependent		zinc ion binding				0		Hepatocellular(102;0.244)				ACCAAAGAGCCTAGAATAAGA	0.408													10	30					0	0	1	0	0
RERGL	79785	broad.mit.edu	37	12	18234310	18234310	+	Missense_Mutation	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:18234310T>A	uc001rdq.2	-	6	627	c.433A>T	c.(433-435)AAC>TAC	p.N145Y	RERGL_uc001rdr.2_Missense_Mutation_p.N144Y	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	145	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						TGGCATCGGTTTTCCAGTGCC	0.458													18	71					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21712622	21712622	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:21712622C>T	uc001rfb.2	-	9	1447	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	398					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						CCAAACTTTTCCTTCACAGAA	0.294													7	25					0	0	1	0	0
GYS2	2998	broad.mit.edu	37	12	21713332	21713332	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:21713332C>T	uc001rfb.2	-	8	1412	c.1157G>A	c.(1156-1158)CGA>CAA	p.R386Q		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	386					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						CAGCTGTTTTCGCACTGCTTG	0.383													33	106					0	0	1	0	0
H1FNT	341567	broad.mit.edu	37	12	48723737	48723737	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:48723737G>A	uc001rrm.2	+	1	975	c.663G>A	c.(661-663)GTG>GTA	p.V221V		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	221					chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						GACAGGCCGTGAAGGAAGACA	0.667													6	13					0	0	1	0	0
C12orf41	54934	broad.mit.edu	37	12	49061521	49061521	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:49061521G>A	uc001rrx.2	-	7	1003	c.928C>T	c.(928-930)CGT>TGT	p.R310C	C12orf41_uc001rrw.2_Missense_Mutation_p.R115C|C12orf41_uc001rrz.2_Missense_Mutation_p.R493C|C12orf41_uc001rry.2_RNA|C12orf41_uc001rrv.2_Missense_Mutation_p.R28C|SNORA2B_uc001rsc.1_5'Flank	NM_017822	NP_060292	Q9H9L4	CL041_HUMAN	hypothetical protein LOC54934	310										ovary(2)	2						TTGGAACAACGAACATCATCC	0.443													23	118					0	0	1	0	0
MLL2	8085	broad.mit.edu	37	12	49418438	49418438	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:49418438G>A	uc001rta.3	-	50	15975	c.15975C>T	c.(15973-15975)CCC>CCT	p.P5325P		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5325					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GCTCCATAAGGGGGTGGCGCC	0.532			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			10	17					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53002027	53002027	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:53002027C>T	uc001sas.2	-	9	1611	c.1576G>A	c.(1576-1578)GGA>AGA	p.G526R		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	526	Tail.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		AAGGTCTTTCCCTGGGAGTCC	0.567													42	132					0	0	1	0	0
KRT73	319101	broad.mit.edu	37	12	53005026	53005026	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:53005026G>A	uc001sas.2	-	6	1107	c.1072C>T	c.(1072-1074)CAA>TAA	p.Q358*		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	358	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CGCAGTCTTTGGATGAGACGG	0.552													21	93					0	0	1	0	0
CALCOCO1	57658	broad.mit.edu	37	12	54107625	54107625	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:54107625G>A	uc001sef.2	-	13	1795	c.1651C>T	c.(1651-1653)CCC>TCC	p.P551S	CALCOCO1_uc001see.2_Missense_Mutation_p.P52S|CALCOCO1_uc010som.1_Missense_Mutation_p.P466S|CALCOCO1_uc010son.1_Missense_Mutation_p.P428S|CALCOCO1_uc001seh.2_Missense_Mutation_p.P551S|CALCOCO1_uc009znd.2_Missense_Mutation_p.P551S|CALCOCO1_uc001seg.2_Missense_Mutation_p.P376S	NM_020898	NP_065949	Q9P1Z2	CACO1_HUMAN	coiled-coil transcriptional coactivator isoform	551	C-terminal AD (CTNNB1 binding site) (By similarity).				steroid hormone receptor signaling pathway|transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm	armadillo repeat domain binding|beta-catenin binding|ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|sequence-specific DNA binding|transcription regulatory region DNA binding			ovary(1)	1						AGGCCATAGGGTGGGAGCCTC	0.587													27	81					0	0	1	0	0
HOXC5	3222	broad.mit.edu	37	12	54427267	54427267	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:54427267G>T	uc001sew.2	+	1	436	c.361G>T	c.(361-363)GAG>TAG	p.E121*	HOXC5_uc001set.2_Intron|HOXC4_uc001seu.2_Intron|MIR615_hsa-mir-615|MI0003628_5'Flank	NM_018953	NP_061826	Q00444	HXC5_HUMAN	homeobox C5	121					regulation of transcription from RNA polymerase II promoter	cell junction|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GATCAAAGAGGAGCAGGCGCA	0.637													3	10					0.115264	0.115412	1	1	0
ERBB3	2065	broad.mit.edu	37	12	56481944	56481944	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:56481944C>T	uc001sjh.2	+	7	1065	c.872C>T	c.(871-873)CCC>CTC	p.P291L	ERBB3_uc009zoj.2_RNA|ERBB3_uc010sqb.1_Intron|ERBB3_uc010sqc.1_Missense_Mutation_p.P232L|ERBB3_uc001sji.2_5'Flank	NM_001982	NP_001973	P21860	ERBB3_HUMAN	erbB-3 isoform 1 precursor	291	Extracellular (Potential).				cranial nerve development|heart development|negative regulation of cell adhesion|negative regulation of neuron apoptosis|negative regulation of secretion|negative regulation of signal transduction|neuron apoptosis|phosphatidylinositol 3-kinase cascade|positive regulation of phosphatidylinositol 3-kinase cascade|regulation of cell proliferation|Schwann cell differentiation|transmembrane receptor protein tyrosine kinase signaling pathway|wound healing	basolateral plasma membrane|extracellular space|integral to plasma membrane|receptor complex	ATP binding|growth factor binding|protein heterodimerization activity|protein homodimerization activity|protein tyrosine kinase activator activity|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(3)|central_nervous_system(2)|stomach(1)|ovary(1)|skin(1)	8			OV - Ovarian serous cystadenocarcinoma(18;0.112)			GCCAGCTGTCCCCGTAAGTGT	0.443													12	31					0	0	1	0	0
AGAP2	116986	broad.mit.edu	37	12	58121520	58121520	+	Missense_Mutation	SNP	A	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:58121520A>T	uc001spq.2	-	16	2801	c.2801T>A	c.(2800-2802)ATC>AAC	p.I934N	AGAP2_uc001spo.1_5'Flank|AGAP2_uc001spp.2_Missense_Mutation_p.I933N|AGAP2_uc001spr.2_Missense_Mutation_p.I578N|LOC100130776_uc001sps.3_Missense_Mutation_p.M249L	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	934	Arf-GAP.				axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						GATCGCCTGGATGGCCACGGC	0.627													3	26					0	0	1	0	0
BEST3	144453	broad.mit.edu	37	12	70048755	70048755	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:70048755C>T	uc001svg.2	-	10	2166	c.1939G>A	c.(1939-1941)GAA>AAA	p.E647K	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.E434K|BEST3_uc010stm.1_Missense_Mutation_p.E541K	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	647	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			TCCAGGTTTTCCATTAAATAC	0.448													8	41					0	0	1	0	0
SYT1	6857	broad.mit.edu	37	12	79837979	79837979	+	Missense_Mutation	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:79837979A>C	uc001sys.2	+	11	1726	c.1055A>C	c.(1054-1056)CAA>CCA	p.Q352P	SYT1_uc001syt.2_Missense_Mutation_p.Q352P|SYT1_uc001syu.2_Missense_Mutation_p.Q349P|SYT1_uc001syv.2_Missense_Mutation_p.Q352P	NM_001135805	NP_001129277	P21579	SYT1_HUMAN	synaptotagmin I	352	Cytoplasmic (Potential).|Phospholipid binding (Probable).|C2 2.				detection of calcium ion|glutamate secretion|neurotransmitter secretion|protein homooligomerization	cell junction|chromaffin granule membrane|clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	1-phosphatidylinositol binding|low-density lipoprotein particle receptor binding|metal ion binding|syntaxin-1 binding|transporter activity			skin(3)|pancreas(2)|ovary(1)	6						CCTTTTGAACAAATCCAGGTA	0.358													35	144					0	0	1	0	0
C12orf26	84190	broad.mit.edu	37	12	82796832	82796832	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:82796832A>G	uc001szq.2	+	5	1223	c.1202A>G	c.(1201-1203)AAC>AGC	p.N401S		NM_032230	NP_115606	Q8N6Q8	CL026_HUMAN	hypothetical protein LOC84190	401											0						TTTACCTCCAACTCTGAAATC	0.383													12	45					0	0	1	0	0
MYBPC1	4604	broad.mit.edu	37	12	102056192	102056192	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:102056192G>A	uc001tii.2	+	19	2116	c.2014G>A	c.(2014-2016)GAT>AAT	p.D672N	MYBPC1_uc001tig.2_Missense_Mutation_p.D697N|MYBPC1_uc010svq.1_Missense_Mutation_p.D659N|MYBPC1_uc001tih.2_Missense_Mutation_p.D697N|MYBPC1_uc001tij.2_Missense_Mutation_p.D672N|MYBPC1_uc010svr.1_Missense_Mutation_p.D672N|MYBPC1_uc010svs.1_Missense_Mutation_p.D672N|MYBPC1_uc010svt.1_Missense_Mutation_p.D660N|MYBPC1_uc010svu.1_Missense_Mutation_p.D653N|MYBPC1_uc001tik.2_Missense_Mutation_p.D646N	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	672	Fibronectin type-III 1.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						GCTGAATTTTGATCTCTGCAA	0.428													8	54					0	0	1	0	0
STAB2	55576	broad.mit.edu	37	12	104126850	104126850	+	Missense_Mutation	SNP	G	A	A	rs147807697	by1000genomes	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:104126850G>A	uc001tjw.2	+	51	5536	c.5350G>A	c.(5350-5352)GAC>AAC	p.D1784N	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1784	Extracellular (Potential).|FAS1 6.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CTGGCCCACCGACCAAGCCCT	0.522													44	118					0	0	1	0	0
TRAFD1	10906	broad.mit.edu	37	12	112578685	112578685	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:112578685C>T	uc001ttp.2	+	5	386	c.300C>T	c.(298-300)CTC>CTT	p.L100L	TRAFD1_uc001tto.2_Silent_p.L100L|TRAFD1_uc009zwb.2_Silent_p.L100L|TRAFD1_uc010syj.1_RNA	NM_006700	NP_006691	O14545	TRAD1_HUMAN	TRAF-type zinc finger domain containing 1	100	TRAF-type.				negative regulation of innate immune response	intracellular	protein binding|zinc ion binding				0						TTTCCATTCTCAAACTGAAGG	0.463													28	85					0	0	1	0	0
C12orf51	283450	broad.mit.edu	37	12	112654696	112654696	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:112654696G>A	uc009zwc.2	-	40	6018	c.6000C>T	c.(5998-6000)ATC>ATT	p.I2000I	C12orf51_uc001ttr.1_Silent_p.I175I	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						CATAGGAAACGATTTCAATTT	0.493													21	77					0	0	1	0	0
RPL6	6128	broad.mit.edu	37	12	112846061	112846062	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:112846061_112846062CC>TT	uc001ttu.2	-	3	547_548	c.318_319GG>AA	c.(316-321)GTGGTT>GTAATT	p.V107I	RPL6_uc001ttv.2_Missense_Mutation_p.V107I|RPL6_uc009zwd.1_3'UTR	NM_001024662	NP_001019833	Q02878	RL6_HUMAN	ribosomal protein L6	107					endocrine pancreas development|regulation of transcription, DNA-dependent|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	DNA binding|RNA binding|structural constituent of ribosome			large_intestine(1)	1						CGAAGTTTAACCACCCGGGTAC	0.396													14	69					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118198896	118198896	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:118198896G>A	uc001two.2	-	4	874	c.819C>T	c.(817-819)ATC>ATT	p.I273I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	302					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGAATCCCGGGATCAAGTGTA	0.662													25	119					0	0	1	0	0
KSR2	283455	broad.mit.edu	37	12	118198921	118198921	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:118198921G>A	uc001two.2	-	4	849	c.794C>T	c.(793-795)TCC>TTC	p.S265F		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	294					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TTTTCGGGAGGAGGGCGGTGG	0.672													26	131					0	0	1	0	0
GCN1L1	10985	broad.mit.edu	37	12	120600896	120600896	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:120600896G>A	uc001txo.2	-	19	2029	c.2016C>T	c.(2014-2016)ATC>ATT	p.I672I		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	672					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGTGGGAGATGATCAGCATTT	0.607													16	54					0	0	1	0	0
MSI1	4440	broad.mit.edu	37	12	120791151	120791151	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:120791151G>A	uc001tye.1	-	10	748	c.684C>T	c.(682-684)GCC>GCT	p.A228A		NM_002442	NP_002433	O43347	MSI1H_HUMAN	musashi 1	228					nervous system development	cytoplasm|nucleus	nucleotide binding			central_nervous_system(2)|breast(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					AACTCCGGCTGGCGTAGGTTG	0.607													23	91					0	0	1	0	0
CAMKK2	10645	broad.mit.edu	37	12	121712076	121712076	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:121712076G>A	uc001tzu.2	-	2	378	c.254C>T	c.(253-255)ACC>ATC	p.T85I	CAMKK2_uc001tzt.2_Missense_Mutation_p.T85I|CAMKK2_uc001tzv.2_Missense_Mutation_p.T85I|CAMKK2_uc001tzw.2_Missense_Mutation_p.T85I|CAMKK2_uc001tzx.2_Missense_Mutation_p.T85I|CAMKK2_uc001tzy.2_Missense_Mutation_p.T85I|CAMKK2_uc001uaa.1_Missense_Mutation_p.T85I|CAMKK2_uc001uab.2_Missense_Mutation_p.T85I|CAMKK2_uc001uac.2_Missense_Mutation_p.T85I|CAMKK2_uc001uad.1_Missense_Mutation_p.T85I	NM_006549	NP_006540	Q96RR4	KKCC2_HUMAN	calcium/calmodulin-dependent protein kinase	85					calcium-mediated signaling|MAPKKK cascade|positive regulation of transcription, DNA-dependent|protein autophosphorylation|regulation of protein kinase activity	cytoplasm	ATP binding|calcium ion binding|calmodulin binding|calmodulin-dependent protein kinase activity|protein tyrosine kinase activity			lung(1)|large_intestine(1)|stomach(1)	3	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GGACCCGGAGGTGTCAAGGGG	0.692													10	23					0	0	1	0	0
B3GNT4	79369	broad.mit.edu	37	12	122691281	122691281	+	Silent	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:122691281G>T	uc001ubx.2	+	3	701	c.483G>T	c.(481-483)GTG>GTT	p.V161V	B3GNT4_uc001uby.2_Silent_p.V136V	NM_030765	NP_110392	Q9C0J1	B3GN4_HUMAN	UDP-GlcNAc:betaGal	161	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000297)|Epithelial(86;0.000497)|BRCA - Breast invasive adenocarcinoma(302;0.222)		TCCTAGGGGTGGCAGGATCCG	0.637													19	47					3.32936e-07	3.36377e-07	1	1	0
TPTE2	93492	broad.mit.edu	37	13	20006621	20006621	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:20006621G>A	uc001umd.2	-	17	1425	c.1214C>T	c.(1213-1215)TCG>TTG	p.S405L	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.S294L|TPTE2_uc001ume.2_Missense_Mutation_p.S328L|TPTE2_uc009zzm.2_Missense_Mutation_p.S76L|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.S76L	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	405	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACCACGAATCGAATAAATAAT	0.388													5	31					0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23915199	23915199	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:23915199G>A	uc001uon.2	-	10	3405	c.2816C>T	c.(2815-2817)TCC>TTC	p.S939F	SACS_uc001uoo.2_Missense_Mutation_p.S792F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	939					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		TGTATAAGAGGAAATTCCCTG	0.363													19	88					0	0	1	0	0
ATP12A	479	broad.mit.edu	37	13	25275033	25275033	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:25275033C>T	uc001upp.2	+	13	2041	c.1854C>T	c.(1852-1854)GTC>GTT	p.V618V	ATP12A_uc010aaa.2_Silent_p.V624V	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	618	Cytoplasmic (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	CAGATGCAGTCACCAAATGCC	0.463													14	58					0	0	1	0	0
RNF17	56163	broad.mit.edu	37	13	25433138	25433138	+	Splice_Site	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:25433138G>A	uc001upr.2	+	26	3652	c.3611_splice	c.e26-1	p.E1204_splice	RNF17_uc010tdd.1_Splice_Site_p.E1063_splice|RNF17_uc010aab.2_Splice_Site|RNF17_uc010tde.1_Splice_Site_p.E1200_splice|RNF17_uc001ups.2_Splice_Site_p.E1143_splice|RNF17_uc010aac.2_Splice_Site_p.E402_splice|RNF17_uc010aad.2_Splice_Site_p.E256_splice	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17						multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		CTTTTTTTCAGAATTTGAGCT	0.284													6	15					0	0	1	0	0
CENPJ	55835	broad.mit.edu	37	13	25486139	25486139	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:25486139G>A	uc001upt.3	-	3	766	c.513C>T	c.(511-513)CTC>CTT	p.L171L	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	171					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		GTTCTTCCATGAGTCTCTGTA	0.408													24	84					0	0	1	0	0
STARD13	90627	broad.mit.edu	37	13	33716453	33716453	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:33716453C>T	uc001uuw.2	-	4	507	c.381G>A	c.(379-381)AGG>AGA	p.R127R	STARD13_uc001uuu.2_Silent_p.R119R|STARD13_uc001uuv.2_Silent_p.R9R|STARD13_uc001uux.2_Silent_p.R92R|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Silent_p.R112R	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	127					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CTACCTTTTTCCTTTGGAAGT	0.279													15	63					0	0	1	0	0
STOML3	161003	broad.mit.edu	37	13	39544522	39544522	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:39544522G>A	uc001uwx.2	-	5	454	c.316C>T	c.(316-318)CTC>TTC	p.L106F	STOML3_uc010tez.1_Missense_Mutation_p.L97F	NM_145286	NP_660329	Q8TAV4	STML3_HUMAN	stomatin-like 3 isoform 1	106	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(1)	1		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		TCTCTGGTGAGGATCTGTGGA	0.458													25	76					0	0	1	0	0
KIAA0564	23078	broad.mit.edu	37	13	42277461	42277461	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:42277461T>C	uc001uyj.2	-	27	3273	c.3203A>G	c.(3202-3204)GAA>GGA	p.E1068G		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1068						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		ATGATGAGTTTCCACTGGACA	0.373													10	54					0	0	1	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370073	86370073	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:86370073G>A	uc001vll.1	-	2	1030	c.571C>T	c.(571-573)CGT>TGT	p.R191C	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	191	Extracellular (Potential).|LRR 5.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TGATTTCCACGAAGATCTAGA	0.388													39	121					0	0	1	0	0
IPO5	3843	broad.mit.edu	37	13	98655019	98655019	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:98655019C>T	uc001vnf.1	+	12	1380	c.1315C>T	c.(1315-1317)CAT>TAT	p.H439Y	IPO5_uc001vne.2_Missense_Mutation_p.H457Y|IPO5_uc010tik.1_Missense_Mutation_p.H314Y|IPO5_uc010til.1_Missense_Mutation_p.H379Y|IPO5_uc001vng.1_Missense_Mutation_p.H60Y	NM_002271	NP_002262	O00410	IPO5_HUMAN	importin 5	439	HEAT 3.				interspecies interaction between organisms|NLS-bearing substrate import into nucleus|ribosomal protein import into nucleus	cytoplasm|nuclear pore|nucleolus	GTPase inhibitor activity|protein transporter activity|Ran GTPase binding			ovary(1)|lung(1)|skin(1)	3						AAAGAAATTTCATGAGAAGGT	0.418													23	66					0	0	1	0	0
SLC15A1	6564	broad.mit.edu	37	13	99358483	99358483	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr13:99358483C>T	uc001vno.2	-	16	1251	c.1174G>A	c.(1174-1176)GGA>AGA	p.G392R		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	392	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	ACTTCGTTTCCTTTGGGGAAG	0.393													18	48					0	0	1	0	0
FLJ10357	55701	broad.mit.edu	37	14	21555550	21555551	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:21555550_21555551CC>TT	uc001vzp.2	+	21	4344_4345	c.4315_4316CC>TT	c.(4315-4317)CCG>TTG	p.P1439L	FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Intron	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	1439					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		CGGCCTTTCGCCGGGAGCCTGC	0.698													20	58					0	0	1	0	0
CHD8	57680	broad.mit.edu	37	14	21871732	21871732	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:21871732C>T	uc001was.1	-	17	2655	c.2561G>A	c.(2560-2562)GGC>GAC	p.G854D	CHD8_uc001war.1_Missense_Mutation_p.G750D|CHD8_uc001wav.1_Missense_Mutation_p.G296D	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8	1133					ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		AACCAGTTTGCCGGCTGAACG	0.458													3	21					0	0	1	0	0
CEBPE	1053	broad.mit.edu	37	14	23588291	23588291	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:23588291C>T	uc001wiv.1	-	1	184	c.10G>A	c.(10-12)GGG>AGG	p.G4R		NM_001805	NP_001796	Q15744	CEBPE_HUMAN	CCAAT/enhancer binding protein epsilon	4						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0064)		TAGTAGGTCCCGTGGGACATG	0.701													8	12					0	0	1	0	0
SLC22A17	51310	broad.mit.edu	37	14	23817418	23817419	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:23817418_23817419GG>AA	uc001wjl.2	-	5	845_846	c.789_790CC>TT	c.(787-792)AACCGG>AATTGG	p.R264W	SLC22A17_uc010akk.2_Missense_Mutation_p.R46W|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Missense_Mutation_p.R264W	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	264					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		CCATGGGGCCGGTTTCGCTCAG	0.614													20	70					0	0	1	0	0
MYH6	4624	broad.mit.edu	37	14	23874460	23874460	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:23874460G>A	uc001wjv.2	-	5	541	c.474C>T	c.(472-474)TCC>TCT	p.S158S	MYH6_uc010akp.1_Silent_p.S158S	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	158	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		AGGCGTTGTCGGAGATGGAGA	0.622													59	129					0	0	1	0	0
NFATC4	4776	broad.mit.edu	37	14	24845892	24845892	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:24845892C>T	uc001wpc.2	+	9	2770	c.2449C>T	c.(2449-2451)CCT>TCT	p.P817S	NFATC4_uc010tok.1_Missense_Mutation_p.P880S|NFATC4_uc010tol.1_Missense_Mutation_p.P880S|NFATC4_uc010alr.2_Intron|NFATC4_uc010tom.1_Missense_Mutation_p.P830S|NFATC4_uc010ton.1_Missense_Mutation_p.P830S|NFATC4_uc010too.1_Intron|NFATC4_uc010alt.2_Missense_Mutation_p.P849S|NFATC4_uc010top.1_Missense_Mutation_p.P849S|NFATC4_uc010toq.1_Intron|NFATC4_uc010tor.1_Intron|NFATC4_uc010tos.1_Missense_Mutation_p.P747S|NFATC4_uc010tot.1_Missense_Mutation_p.P805S|NFATC4_uc010tou.1_Missense_Mutation_p.P747S|NFATC4_uc010tov.1_Intron|NFATC4_uc010tow.1_Intron|NFATC4_uc010alv.2_Missense_Mutation_p.P805S|NFATC4_uc010tox.1_Missense_Mutation_p.P747S|NFATC4_uc001wpd.2_Missense_Mutation_p.P352S|NFATC4_uc010toy.1_Intron|NFATC4_uc010toz.1_Missense_Mutation_p.P352S|NFATC4_uc010tpa.1_Missense_Mutation_p.P105S|NFATC4_uc010tpb.1_Missense_Mutation_p.P105S	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	817	Pro-rich.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		GCCTCCTCTTCCTGCATCCCC	0.642													35	143					0	0	1	0	0
NOVA1	4857	broad.mit.edu	37	14	26917263	26917263	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:26917263C>T	uc001wpy.2	-	5	1744	c.1426G>A	c.(1426-1428)GGA>AGA	p.G476R	NOVA1_uc001wpz.2_Missense_Mutation_p.G452R|NOVA1_uc001wqa.2_Missense_Mutation_p.G354R	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	479	KH 3.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GCTGGTGTTCCAGTAATGGTT	0.448													6	49					0	0	1	0	0
WDHD1	11169	broad.mit.edu	37	14	55448271	55448271	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:55448271G>A	uc001xbm.1	-	16	2128	c.2050C>T	c.(2050-2052)CCC>TCC	p.P684S	WDHD1_uc010aom.1_Missense_Mutation_p.P201S|WDHD1_uc001xbn.1_Missense_Mutation_p.P561S	NM_007086	NP_009017	O75717	WDHD1_HUMAN	WD repeat and HMG-box DNA binding protein 1	684						cytoplasm|nucleoplasm	DNA binding			skin(1)	1						AGTTGCTGGGGATTTTCATGG	0.368													22	65					0	0	1	0	0
SYT16	83851	broad.mit.edu	37	14	62551076	62551076	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:62551076C>T	uc001xfu.1	+	5	1794	c.1597C>T	c.(1597-1599)CGA>TGA	p.R533*	SYT16_uc010tse.1_Nonsense_Mutation_p.R91*	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	533	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		CAGCCATTTCCGAAACCTCGC	0.537													10	47					0	0	1	0	0
HSPA2	3306	broad.mit.edu	37	14	65009365	65009365	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:65009365A>G	uc001xhj.2	+	2	1874	c.1798A>G	c.(1798-1800)AAA>GAA	p.K600E	HSPA2_uc001xhk.3_Missense_Mutation_p.K600E	NM_021979	NP_068814	P54652	HSP72_HUMAN	heat shock 70kDa protein 2	600					response to unfolded protein|spermatid development	cell surface	ATP binding|unfolded protein binding			skin(1)	1				all cancers(60;0.00515)|OV - Ovarian serous cystadenocarcinoma(108;0.00584)|BRCA - Breast invasive adenocarcinoma(234;0.045)		ACACAAGCAGAAAGAGCTCGA	0.448													21	59					0	0	1	0	0
PCNX	22990	broad.mit.edu	37	14	71444685	71444685	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:71444685C>T	uc001xmo.2	+	6	2077	c.1631C>T	c.(1630-1632)CCT>CTT	p.P544L	PCNX_uc001xmn.3_Missense_Mutation_p.P544L|PCNX_uc010are.1_Missense_Mutation_p.P544L	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	544						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GATGTTCGACCTAAATCTTCT	0.463													42	146					0	0	1	0	0
KCNK10	54207	broad.mit.edu	37	14	88652371	88652371	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:88652371C>T	uc001xwo.2	-	7	1582	c.1125G>A	c.(1123-1125)ATG>ATA	p.M375I	KCNK10_uc001xwm.2_Missense_Mutation_p.M380I|KCNK10_uc001xwn.2_Missense_Mutation_p.M380I	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	375	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GCCGGCGCTCCATGCTGCGGA	0.667													7	31					0	0	1	0	0
CCDC88C	440193	broad.mit.edu	37	14	91760643	91760643	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:91760643C>T	uc010aty.2	-	23	4085	c.3986G>A	c.(3985-3987)GGG>GAG	p.G1329E		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1329	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				CTCCAAGTTCCCCTTGAGACG	0.388													15	47					0	0	1	0	0
KIAA1409	57578	broad.mit.edu	37	14	94139696	94139696	+	Splice_Site	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:94139696G>A	uc001ybv.1	+	40	6372	c.6289_splice	c.e40-1	p.E2097_splice	KIAA1409_uc001ybs.1_Splice_Site_p.E2075_splice	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578							integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GTTTTCTTTAGGAACGAGATA	0.358													24	56					0	0	1	0	0
SERPINA12	145264	broad.mit.edu	37	14	94964180	94964180	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:94964180G>A	uc001ydj.2	-	3	1351	c.555C>T	c.(553-555)ACC>ACT	p.T185T		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	185					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		TTTTCCCATGGGTTTTTTGAC	0.373													40	106					0	0	1	0	0
DICER1	23405	broad.mit.edu	37	14	95579448	95579448	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:95579448G>A	uc001ydw.2	-	13	2203	c.2021C>T	c.(2020-2022)CCT>CTT	p.P674L	DICER1_uc001ydv.2_Missense_Mutation_p.P664L|DICER1_uc001ydx.2_Missense_Mutation_p.P674L	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	674	Dicer dsRNA-binding fold.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		GGCTCGAAGAGGTGAGTTAAT	0.363			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				13	56					0	0	1	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103412809	103412809	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:103412809G>A	uc001ymi.1	-	28	3976	c.3744C>T	c.(3742-3744)ATC>ATT	p.I1248I	CDC42BPB_uc001ymj.1_Silent_p.I350I	NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	1248	CNH.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		ACGTACCCACGATGGCAGCTG	0.547													9	53					0	0	1	0	0
ASPG	374569	broad.mit.edu	37	14	104570792	104570792	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:104570792G>A	uc001yoq.1	+	8	965	c.905G>A	c.(904-906)GGG>GAG	p.G302E	ASPG_uc001yoo.1_Missense_Mutation_p.G330E|ASPG_uc001yop.1_Missense_Mutation_p.G302E|ASPG_uc001yor.1_Missense_Mutation_p.G302E	NM_001080464	NP_001073933	Q86U10	LPP60_HUMAN	60 kDa lysophospholipase	302	Asparaginase.				lipid catabolic process		1-alkyl-2-acetylglycerophosphocholine esterase activity|asparaginase activity|lysophospholipase activity				0						TGCCTCCAGGGGGCTGTGACC	0.667													7	29					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106471667	106471667	+	RNA	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr14:106471667C>T	uc010tyt.1	-	1890		c.36527G>A								Parts of antibodies, mostly variable regions.												0						AGAGGATCCTCCAGGTCCAGT	0.557													6	35					0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20490539	20490539	+	RNA	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:20490539C>T	uc001ytf.1	+	4		c.519C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GGTAGTGGATCCAAAGGCATG	0.443													34	420					0	0	1	0	0
GABRA5	2558	broad.mit.edu	37	15	27128374	27128374	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:27128374G>A	uc001zbd.1	+	6	609	c.270G>A	c.(268-270)ACG>ACA	p.T90T	GABRB3_uc001zbb.2_Intron	NM_000810	NP_000801	P31644	GBRA5_HUMAN	gamma-aminobutyric acid A receptor, alpha 5	90	Extracellular (Potential).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(1)	1		all_lung(180;4.59e-13)|Breast(32;0.000563)|Colorectal(260;0.227)		all cancers(64;1.45e-08)|Epithelial(43;4.96e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0232)|Lung(196;0.182)	Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TGTCCGACACGGAAATGGTAG	0.652													14	41					0	0	1	0	0
C15orf55	256646	broad.mit.edu	37	15	34649228	34649228	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:34649228A>G	uc001zif.2	+	7	3090	c.2935A>G	c.(2935-2937)ACC>GCC	p.T979A	C15orf55_uc010ucc.1_Missense_Mutation_p.T1007A|C15orf55_uc010ucd.1_Missense_Mutation_p.T997A	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	979						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		TAGAAGGGGAACCAGGAATGC	0.478			T	BRD3|BRD4	lethal midline carcinoma								15	31					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39879565	39879565	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:39879565G>A	uc001zkh.2	+	8	1317	c.1138G>A	c.(1138-1140)GAT>AAT	p.D380N	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	380	TSP type-1 1.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	CTCTGCGGACGATGGCTGGTC	0.572													16	35					0	0	1	0	0
THBS1	7057	broad.mit.edu	37	15	39880262	39880262	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:39880262G>A	uc001zkh.2	+	9	1493	c.1314G>A	c.(1312-1314)TGG>TGA	p.W438*	THBS1_uc010bbi.2_5'Flank	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	438	TSP type-1 2.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	ATGGTGGCTGGAGCCACTGGT	0.522													20	82					0	0	1	0	0
PLCB2	5330	broad.mit.edu	37	15	40599815	40599815	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:40599815C>T	uc001zld.2	-	1	360	c.59G>A	c.(58-60)GGG>GAG	p.G20E	PLCB2_uc010bbo.2_Missense_Mutation_p.G20E|PLCB2_uc010ucm.1_Missense_Mutation_p.G20E|PLCB2_uc001zle.3_Missense_Mutation_p.G20E	NM_004573	NP_004564	Q00722	PLCB2_HUMAN	phospholipase C, beta 2	20					activation of phospholipase C activity|intracellular signal transduction|lipid catabolic process|phospholipid metabolic process|synaptic transmission	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(3)|breast(3)|kidney(1)|pancreas(1)	8		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.38e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0508)		GAAGCGCTCCCCTTGGCTCAG	0.607													10	32					0	0	1	0	0
CASC5	57082	broad.mit.edu	37	15	40913497	40913497	+	Missense_Mutation	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:40913497T>G	uc010bbs.1	+	11	1274	c.1113T>G	c.(1111-1113)AAT>AAG	p.N371K	CASC5_uc010ucq.1_Missense_Mutation_p.N195K|CASC5_uc001zme.2_Missense_Mutation_p.N345K|CASC5_uc010bbt.1_Missense_Mutation_p.N345K	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	371	Interaction with BUB1 and BUB1B.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		AAACTCAGAATGCCATGGATG	0.328													22	75					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	42035012	42035012	+	Silent	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:42035012T>A	uc010ucy.1	+	15	5035	c.4854T>A	c.(4852-4854)ATT>ATA	p.I1618I	MGA_uc010ucz.1_Intron|MGA_uc010uda.1_Silent_p.I234I	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1618	Thr-rich.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		TGACTGCTATTTCTGACGTGG	0.453													20	90					0	0	1	0	0
SPTBN5	51332	broad.mit.edu	37	15	42172063	42172063	+	Splice_Site	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:42172063C>T	uc001zos.2	-	15	3040	c.2707_splice	c.e15-1	p.N903_splice		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5						actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		TGAGGAAGTTCTAGGGAAAAG	0.562													14	33					0	0	1	0	0
TRIM69	140691	broad.mit.edu	37	15	45050851	45050851	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:45050851C>T	uc001zuf.2	+	5	1507	c.612C>T	c.(610-612)TCC>TCT	p.S204S	TRIM69_uc001zui.1_5'UTR|TRIM69_uc010bdy.1_5'UTR|TRIM69_uc001zug.1_Silent_p.S204S|TRIM69_uc001zuh.1_Silent_p.S45S	NM_182985	NP_892030	Q86WT6	TRI69_HUMAN	tripartite motif-containing 69 isoform a	204	Potential.				apoptosis	nuclear speck	zinc ion binding				0		all_cancers(109;2.47e-13)|all_epithelial(112;2.84e-11)|Lung NSC(122;2.23e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;5.5e-19)|GBM - Glioblastoma multiforme(94;1.07e-06)|Colorectal(105;0.138)|COAD - Colon adenocarcinoma(120;0.141)		AACATGTGTCCATGGAGTTTC	0.483													16	42					0	0	1	0	0
C15orf48	84419	broad.mit.edu	37	15	45724290	45724290	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:45724290C>T	uc001zvg.2	+	4	261	c.143C>T	c.(142-144)CCA>CTA	p.P48L	C15orf48_uc001zvh.2_Missense_Mutation_p.P48L|MIR147B_hsa-mir-147b|MI0005544_5'Flank	NM_197955	NP_922946	Q9C002	NMES1_HUMAN	normal mucosa of esophagus specific 1	48						nucleus				ovary(1)	1		Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.67e-16)|GBM - Glioblastoma multiforme(94;1.71e-06)		AAAAAAAATCCAGAACCTTGG	0.318													4	28					0	0	1	0	0
DMXL2	23312	broad.mit.edu	37	15	51839578	51839578	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:51839578G>A	uc002abf.2	-	7	820	c.595C>T	c.(595-597)CCT>TCT	p.P199S	DMXL2_uc010ufy.1_Missense_Mutation_p.P199S|DMXL2_uc010bfa.2_Missense_Mutation_p.P199S	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	199	WD 2.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CCAGTCATAGGATACCACACT	0.323													9	52					0	0	1	0	0
MAPK6	5597	broad.mit.edu	37	15	52356225	52356226	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:52356225_52356226CC>TT	uc002abp.2	+	6	1988_1989	c.1194_1195CC>TT	c.(1192-1197)CCCCGA>CCTTGA	p.R399*		NM_002748	NP_002739	Q16659	MK06_HUMAN	mitogen-activated protein kinase 6	399					cell cycle		ATP binding|MAP kinase activity			lung(3)|ovary(1)	4				all cancers(107;0.0028)		AAGTTGATCCCCGAAAATATTT	0.406													29	76					0	0	1	0	0
TEX9	374618	broad.mit.edu	37	15	56681579	56681579	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:56681579G>A	uc002adp.2	+	6	381	c.376G>A	c.(376-378)GGA>AGA	p.G126R	TEX9_uc002ado.1_Missense_Mutation_p.G126R|TEX9_uc010ugl.1_Missense_Mutation_p.G51R|TEX9_uc002adq.1_Missense_Mutation_p.G51R	NM_198524	NP_940926	Q8N6V9	TEX9_HUMAN	testis expressed 9	126											0				all cancers(107;0.0394)|GBM - Glioblastoma multiforme(80;0.056)		TGCAAATAAAGGAAGGAAAAC	0.274													6	30					0	0	1	0	0
C15orf44	81556	broad.mit.edu	37	15	65877212	65877212	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:65877212G>A	uc002apd.2	-	10	1471	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	C15orf44_uc010uix.1_Missense_Mutation_p.P415S|C15orf44_uc010uiz.1_Missense_Mutation_p.P343S|C15orf44_uc010uja.1_Missense_Mutation_p.P329S|C15orf44_uc010ujb.1_Missense_Mutation_p.P300S|C15orf44_uc002ape.3_Missense_Mutation_p.P379S|C15orf44_uc010uiy.1_Missense_Mutation_p.P300S	NM_030800	NP_110427	Q96SY0	CO044_HUMAN	hypothetical protein LOC81556 isoform 2	379										ovary(1)	1						TCGCCATAAGGGTTTTCTTTA	0.413													8	25					0	0	1	0	0
TMEM202	338949	broad.mit.edu	37	15	72690748	72690748	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:72690748G>A	uc002auq.2	+	1	81	c.81G>A	c.(79-81)AGG>AGA	p.R27R	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	27						integral to membrane				central_nervous_system(1)|skin(1)	2						AATACCAAAGGGTGAGGAGGT	0.433													7	20					0	0	1	0	0
BBS4	585	broad.mit.edu	37	15	73023728	73023728	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:73023728C>T	uc002avb.2	+	11	837	c.794C>T	c.(793-795)GCT>GTT	p.A265V	BBS4_uc010ukv.1_Missense_Mutation_p.A253V|BBS4_uc002avc.2_Missense_Mutation_p.A93V|BBS4_uc002avd.2_Missense_Mutation_p.A273V|BBS4_uc010bja.2_Missense_Mutation_p.A21V	NM_033028	NP_149017	Q96RK4	BBS4_HUMAN	Bardet-Biedl syndrome 4	265	Interaction with PCM1.|TPR 6.				adult behavior|brain morphogenesis|cell cycle cytokinesis|centrosome organization|cerebral cortex development|convergent extension involved in gastrulation|dendrite development|fat cell differentiation|heart looping|hippocampus development|intracellular transport|maintenance of protein location in nucleus|melanosome transport|microtubule anchoring at centrosome|neural tube closure|nonmotile primary cilium assembly|photoreceptor cell maintenance|pigment granule aggregation in cell center|positive regulation of flagellum assembly|regulation of cilium beat frequency involved in ciliary motility|regulation of cytokinesis|regulation of lipid metabolic process|retina homeostasis|retinal rod cell development|sensory perception of smell|sensory processing|spermatid development|striatum development	BBSome|centriolar satellite|centriole|cilium membrane|microtubule basal body|motile cilium|nonmotile primary cilium|nucleus|pericentriolar material	alpha-tubulin binding|beta-tubulin binding|dynactin binding|microtubule motor activity				0						GTGGCTTGTGCTGTTCCAGAA	0.478									Bardet-Biedl_syndrome				13	47					0	0	1	0	0
C15orf27	123591	broad.mit.edu	37	15	76430089	76430089	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:76430089C>T	uc002bbq.2	+	3	235	c.80C>T	c.(79-81)TCC>TTC	p.S27F	C15orf27_uc010bkp.2_5'UTR|C15orf27_uc002bbr.2_5'UTR	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	27						integral to membrane					0						GAGATCATCTCCCAACAAGTA	0.502													33	113					0	0	1	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79058878	79058878	+	Silent	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:79058878C>A	uc002bej.3	-	19	3586	c.3375G>T	c.(3373-3375)CTG>CTT	p.L1125L	ADAMTS7_uc010und.1_3'UTR	NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1125					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						ACCAAGGTCCCAGTACCCCCT	0.687													4	15					0.150653	0.150653	1	1	0
RASGRF1	5923	broad.mit.edu	37	15	79312443	79312443	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:79312443C>T	uc002beq.2	-	11	1921	c.1546G>A	c.(1546-1548)GGA>AGA	p.G516R	RASGRF1_uc002bep.2_Missense_Mutation_p.G516R|RASGRF1_uc010blm.1_Missense_Mutation_p.G438R|RASGRF1_uc002ber.3_Missense_Mutation_p.G516R|RASGRF1_uc010unh.1_5'Flank	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	516	PH 2.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GATATGACTCCATTCTGAAAA	0.502													23	84					0	0	1	0	0
TMED3	23423	broad.mit.edu	37	15	79614547	79614547	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:79614547C>T	uc002beu.2	+	3	746	c.645C>T	c.(643-645)GTC>GTT	p.V215V	TMED3_uc010unj.1_Intron|TMED3_uc002bev.2_RNA	NM_007364	NP_031390	Q9Y3Q3	TMED3_HUMAN	transmembrane emp24 domain containing 3	215	Cytoplasmic (Potential).				protein transport	ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane				ovary(1)|skin(1)	2						GCAGGGCAGTCCACTCCTAGC	0.607													14	76					0	0	1	0	0
PDE8A	5151	broad.mit.edu	37	15	85666319	85666319	+	Silent	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:85666319G>T	uc002blh.2	+	19	2169	c.1980G>T	c.(1978-1980)GGG>GGT	p.G660G	PDE8A_uc002bli.2_Silent_p.G614G|PDE8A_uc010bnc.2_Silent_p.G413G|PDE8A_uc010bnd.2_Silent_p.G413G|PDE8A_uc002blj.2_Silent_p.G280G|PDE8A_uc002blk.2_Silent_p.G280G|PDE8A_uc002bll.2_Silent_p.G12G	NM_002605	NP_002596	O60658	PDE8A_HUMAN	phosphodiesterase 8A isoform 1	660	Catalytic (By similarity).				cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(223;0.227)		BRCA - Breast invasive adenocarcinoma(143;0.0608)			TGCGCCAGGGGATTATCGACA	0.423													16	76					1.5739e-10	1.6005e-10	1	1	0
NTRK3	4916	broad.mit.edu	37	15	88472554	88472554	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:88472554C>T	uc002bme.1	-	16	2163	c.2001G>A	c.(1999-2001)ATG>ATA	p.M667I	NTRK3_uc002bmh.2_Missense_Mutation_p.M659I|NTRK3_uc002bmf.1_Missense_Mutation_p.M667I|NTRK3_uc010upl.1_Missense_Mutation_p.M569I|NTRK3_uc010bnh.1_Missense_Mutation_p.M659I	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	667	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			CCAGGTACACCATACCCGAGG	0.582			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			12	48					0	0	1	0	0
ACAN	176	broad.mit.edu	37	15	89392937	89392937	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:89392937C>T	uc010upo.1	+	10	2375	c.2001C>T	c.(1999-2001)TCC>TCT	p.S667S	ACAN_uc002bmx.2_Silent_p.S667S|ACAN_uc010upp.1_Silent_p.S667S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	667					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ACCCACTGTCCCGGCACCATG	0.632													4	17					0	0	1	0	0
C15orf42	90381	broad.mit.edu	37	15	90167737	90167737	+	Missense_Mutation	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:90167737A>C	uc002boe.2	+	20	4196	c.4196A>C	c.(4195-4197)CAG>CCG	p.Q1399P	C15orf42_uc010upv.1_RNA	NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	1399					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			GTGGAGTGTCAGCCTGATGCC	0.577													40	132					0	0	1	0	0
SV2B	9899	broad.mit.edu	37	15	91769606	91769606	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:91769606G>A	uc002bqv.2	+	1	504	c.113G>A	c.(112-114)GGC>GAC	p.G38D	SV2B_uc002bqt.2_Missense_Mutation_p.G38D|SV2B_uc010uqv.1_Intron|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	38	Cytoplasmic (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			GTCACCGAAGGCCATGATGAG	0.532													14	58					0	0	1	0	0
LRRK1	79705	broad.mit.edu	37	15	101593579	101593579	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr15:101593579C>T	uc002bwr.2	+	26	4327	c.4008C>T	c.(4006-4008)CTC>CTT	p.L1336L	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_RNA|LRRK1_uc002bws.2_RNA	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	1336	Protein kinase.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CCCTGGAGCTCGCGCCGCTCA	0.582													4	36					0	0	1	0	0
TSC2	7249	broad.mit.edu	37	16	2127662	2127662	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:2127662G>A	uc002con.2	+	26	3007	c.2901G>A	c.(2899-2901)AAG>AAA	p.K967K	TSC2_uc010bsd.2_Silent_p.K967K|TSC2_uc002coo.2_Intron|TSC2_uc010uvv.1_Intron|TSC2_uc010uvw.1_Intron|TSC2_uc002cop.2_Intron	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	967					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				AAGAATTCAAGGAGAGCTCTG	0.607			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				29	71					0	0	1	0	0
PKD1	5310	broad.mit.edu	37	16	2162790	2162790	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:2162790G>A	uc002cos.1	-	13	3369	c.3160C>T	c.(3160-3162)CTG>TTG	p.L1054L	PKD1_uc002cot.1_Silent_p.L1054L	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	1054	PKD 5.|Extracellular (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						GTCACTCACAGGAAGGCCACC	0.682													6	25					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2813624	2813624	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:2813624C>T	uc002crk.2	+	11	3644	c.3095C>T	c.(3094-3096)TCC>TTC	p.S1032F	SRRM2_uc002crj.1_Missense_Mutation_p.S936F|SRRM2_uc002crl.1_Missense_Mutation_p.S1032F|SRRM2_uc010bsu.1_Missense_Mutation_p.S936F	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1032	Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TGCCCTGGATCCCTCTCTCTC	0.483													35	109					0	0	1	0	0
MEFV	4210	broad.mit.edu	37	16	3293320	3293320	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:3293320C>T	uc002cun.1	-	10	2207	c.2167G>A	c.(2167-2169)GAC>AAC	p.D723N		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	723	B30.2/SPRY.				inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	ACTCTGTAGTCCACGAAGATG	0.517													29	99					0	0	1	0	0
ABAT	18	broad.mit.edu	37	16	8839939	8839939	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:8839939C>T	uc002czc.3	+	3	318	c.152C>T	c.(151-153)CCA>CTA	p.P51L	ABAT_uc002czd.3_Missense_Mutation_p.P51L|ABAT_uc010buh.2_Intron|ABAT_uc010bui.2_Missense_Mutation_p.P51L	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	51					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	ACGGAAGTCCCAGGGCCTAGA	0.483													13	38					0	0	1	0	0
USP7	7874	broad.mit.edu	37	16	8994415	8994415	+	Missense_Mutation	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:8994415T>A	uc002czl.2	-	21	2480	c.2281A>T	c.(2281-2283)ATG>TTG	p.M761L	USP7_uc010uyk.1_Missense_Mutation_p.M662L|USP7_uc002czj.2_RNA|USP7_uc010uyj.1_Missense_Mutation_p.M662L|USP7_uc002czk.2_Missense_Mutation_p.M745L	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	761	Interaction with ICP0/VMW110.				interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						TCACCATCCATTAGTTCATCA	0.323													7	69					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857492	9857492	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:9857492G>A	uc002czo.3	-	13	4457	c.3909C>T	c.(3907-3909)GAC>GAT	p.D1303D	GRIN2A_uc010uym.1_Silent_p.D1303D|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1303	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCCTGCTAAGGTCTAGCTCCC	0.493													32	88					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	10274089	10274089	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:10274089C>T	uc002czo.3	-	2	728	c.180G>A	c.(178-180)GCG>GCA	p.A60A	GRIN2A_uc010uym.1_Silent_p.A60A|GRIN2A_uc002czr.3_Silent_p.A60A|GRIN2A_uc010buk.2_Silent_p.A60A	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	60	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GCAGCCCCGCCGCCTGCTCGG	0.652													22	74					0	0	1	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10551263	10551263	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:10551263A>G	uc002czu.2	+	7	1456	c.1229A>G	c.(1228-1230)AAT>AGT	p.N410S	ATF7IP2_uc002czv.2_Missense_Mutation_p.N410S|ATF7IP2_uc010uyo.1_Intron|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.N410S|ATF7IP2_uc010uyq.1_Intron	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	410					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TTGGATAAGAATCTTGAGTCA	0.318													33	83					0	0	1	0	0
TNFRSF17	608	broad.mit.edu	37	16	12061681	12061681	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:12061681G>A	uc002dbv.2	+	3	750	c.532G>A	c.(532-534)GAG>AAG	p.E178K	TNFRSF17_uc010buy.2_3'UTR|TNFRSF17_uc010buz.2_Missense_Mutation_p.E129K	NM_001192	NP_001183	Q02223	TNR17_HUMAN	tumor necrosis factor receptor superfamily,	178	Cytoplasmic (Potential).				cell proliferation|multicellular organismal development	endomembrane system|integral to membrane|plasma membrane					0						TACGGAGATAGAGAAATCAAT	0.433			T	IL2	intestinal T-cell lymphoma								16	55					0	0	1	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883616	19883616	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:19883616G>A	uc002dgt.2	-	2	660	c.552C>T	c.(550-552)ACC>ACT	p.T184T	GPRC5B_uc010vav.1_Silent_p.T210T	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	184	Extracellular (Potential).									lung(1)|breast(1)|skin(1)	3						CACGCAGCACGGTGAGCACCA	0.652													10	67					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21065751	21065751	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:21065751G>A	uc010vbe.1	-	28	4029	c.4029C>T	c.(4027-4029)ATC>ATT	p.I1343I		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1343	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		CGTGGACATCGATGACCGTGA	0.532													14	33					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21073827	21073827	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:21073827C>T	uc010vbe.1	-	25	3696	c.3696G>A	c.(3694-3696)CAG>CAA	p.Q1232Q		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1232	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GGTAGATTTTCTGTATGAATG	0.353													28	95					0	0	1	0	0
ZP2	7783	broad.mit.edu	37	16	21213314	21213314	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:21213314C>T	uc002dii.2	-	12	1318	c.1318G>A	c.(1318-1320)GAA>AAA	p.E440K	ZP2_uc010bwn.1_Missense_Mutation_p.E479K	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	440	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GCATGTATTTCGTTTTCATAG	0.393													35	125					0	0	1	0	0
PRKCB	5579	broad.mit.edu	37	16	24105562	24105562	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:24105562C>T	uc002dmd.2	+	7	962	c.765C>T	c.(763-765)TTC>TTT	p.F255F	PRKCB_uc002dme.2_Silent_p.F255F	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	255	C2.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GGAATGACTTCATGGGATCTT	0.423													24	87					0	0	1	0	0
RBBP6	5930	broad.mit.edu	37	16	24578724	24578724	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:24578724C>T	uc002dmh.2	+	15	2890	c.1850C>T	c.(1849-1851)TCA>TTA	p.S617L	RBBP6_uc010vcb.1_Missense_Mutation_p.S484L|RBBP6_uc002dmi.2_Missense_Mutation_p.S617L|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.S484L	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	617					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		CCTTGGGTATCATCAGGAGTG	0.463													49	201					0	0	1	0	0
GTF3C1	2975	broad.mit.edu	37	16	27506677	27506677	+	Silent	SNP	C	T	T	rs148107220		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:27506677C>T	uc002dov.1	-	15	2527	c.2487G>A	c.(2485-2487)CGG>CGA	p.R829R	GTF3C1_uc002dou.2_Silent_p.R829R	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	829						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TTATCGTTCTCCGTTCACTGA	0.597													8	36					0	0	1	0	0
SRCAP	10847	broad.mit.edu	37	16	30740291	30740292	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:30740291_30740292CC>TT	uc002dze.1	+	26	6048_6049	c.5663_5664CC>TT	c.(5662-5664)TCC>TTT	p.S1888F	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Missense_Mutation_p.S1683F	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1888					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			CCCCAGGACTCCCTGGAGGAAA	0.51													18	101					0	0	1	0	0
ZNF646	9726	broad.mit.edu	37	16	31091182	31091182	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:31091182G>A	uc002eap.2	+	2	3826	c.3537G>A	c.(3535-3537)GGG>GGA	p.G1179G		NM_014699	NP_055514	O15015	ZN646_HUMAN	zinc finger protein 646	1179					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			breast(2)	2						CTGTGAAGGGGGAGGAGATAG	0.592													3	20					0	0	1	0	0
SLC5A2	6524	broad.mit.edu	37	16	31497517	31497517	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:31497517C>T	uc002ecf.3	+	5	514	c.495C>T	c.(493-495)TTC>TTT	p.F165F	SLC5A2_uc010car.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	165	Extracellular (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						GAGCTGTATTCATCCAGCAGG	0.607													16	60					0	0	1	0	0
NUP93	9688	broad.mit.edu	37	16	56875705	56875705	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:56875705C>T	uc002eka.2	+	21	2430	c.2309C>T	c.(2308-2310)TCG>TTG	p.S770L	NUP93_uc002ekb.2_Missense_Mutation_p.S647L|NUP93_uc010vhi.1_Missense_Mutation_p.S647L	NM_014669	NP_055484	Q8N1F7	NUP93_HUMAN	nucleoporin 93kDa	770					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(1)|lung(1)	2						AGTCCATCCTCGTCATCCAGG	0.512													24	107					0	0	1	0	0
CES8	283848	broad.mit.edu	37	16	67038069	67038069	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:67038069C>T	uc002eqv.2	+	9	1065	c.1022C>T	c.(1021-1023)TCA>TTA	p.S341L	CES8_uc010vix.1_Missense_Mutation_p.S341L|CES8_uc002eqw.2_Missense_Mutation_p.S341L|CES8_uc002eqy.2_Missense_Mutation_p.S243L|CES8_uc002eqx.2_Missense_Mutation_p.S147L|CES8_uc010viy.1_Missense_Mutation_p.S247L|CES8_uc010viz.1_Missense_Mutation_p.S243L|CES8_uc002eqz.2_5'Flank	NM_173815	NP_776176	Q5XG92	EST4A_HUMAN	carboxylesterase 8 (putative)	341						extracellular region	carboxylesterase activity				0						GGGAAGGTTTCATCTGTGCCC	0.493													34	111					0	0	1	0	0
TAT	6898	broad.mit.edu	37	16	71602113	71602114	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:71602113_71602114CC>TT	uc002fap.2	-	12	1397_1398	c.1298_1299GG>AA	c.(1297-1299)CGG>CAA	p.R433Q		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	433					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	ACTCCTGGATCCGGCTGCACGC	0.52													15	48					0	0	1	0	0
DHODH	1723	broad.mit.edu	37	16	72055184	72055184	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:72055184G>A	uc002fbp.2	+	5	700	c.679G>A	c.(679-681)GCC>ACC	p.A227T	DHODH_uc010cgk.2_RNA	NM_001361	NP_001352	Q02127	PYRD_HUMAN	dihydroorotate dehydrogenase precursor	227	Mitochondrial intermembrane (By similarity).				'de novo' pyrimidine base biosynthetic process|pyrimidine nucleoside biosynthetic process|UMP biosynthetic process	integral to membrane|mitochondrial inner membrane	dihydroorotate oxidase activity				0		Ovarian(137;0.125)			Atovaquone(DB01117)|Leflunomide(DB01097)	TCAGGGAAAGGCCGAGCTGCG	0.512													3	14					0	0	1	0	0
DHX38	9785	broad.mit.edu	37	16	72132628	72132628	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:72132628C>T	uc002fcb.2	+	5	1056	c.701C>T	c.(700-702)TCC>TTC	p.S234F	DHX38_uc010vmp.1_Intron|DHX38_uc010cgn.1_RNA	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	234					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				GAATCGCCCTCCCCGACGCCT	0.602													8	39					0	0	1	0	0
CLEC3A	10143	broad.mit.edu	37	16	78056532	78056532	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr16:78056532G>A	uc002ffh.3	+	1	90	c.9G>A	c.(7-9)AAG>AAA	p.K3K		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	3					skeletal system development	extracellular region	sugar binding				0						CCATGGCAAAGAATGGACTTG	0.532													8	27					0	0	1	0	0
PITPNA	5306	broad.mit.edu	37	17	1438746	1438746	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:1438746G>A	uc002fst.3	-	7	779	c.523C>T	c.(523-525)CCC>TCC	p.P175S	PITPNA_uc010cjt.2_Missense_Mutation_p.P59S|PITPNA_uc010cju.2_Missense_Mutation_p.P73S	NM_006224	NP_006215	Q00169	PIPNA_HUMAN	phosphatidylinositol transfer protein, alpha	175					axon guidance|lipid metabolic process|visual perception	cytoplasm	phosphatidylcholine transmembrane transporter activity|phosphatidylinositol transporter activity|protein binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0845)		TTCCAATTGGGGCCCAAGGGT	0.567													7	29					0	0	1	0	0
RILP	83547	broad.mit.edu	37	17	1552937	1552937	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:1552937C>T	uc002ftd.2	-	1	456	c.162G>A	c.(160-162)CTG>CTA	p.L54L		NM_031430	NP_113618	Q96NA2	RILP_HUMAN	Rab interacting lysosomal protein	54					endosome to lysosome transport|protein transport	late endosome membrane|lysosomal membrane|phagocytic vesicle membrane	Rab GTPase binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CTAGCGGCACCAGCCCGGCCG	0.736													2	8					0	0	1	0	0
OR1A2	26189	broad.mit.edu	37	17	3100893	3100893	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:3100893C>T	uc002fvd.1	+	1	81	c.81C>T	c.(79-81)TTC>TTT	p.F27F		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	27	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						ATAATGTCTTCTTTGTGATTT	0.403													40	118					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	3144330	3144330	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:3144330G>A	uc002fvf.2	+	1	414	c.361G>A	c.(361-363)GAT>AAT	p.D121N						SubName: Full=Olfactory receptor OR17-1;																		GATGGCGTATGATCGCTATGT	0.567													13	64					0	0	1	0	0
OR3A4	390756	broad.mit.edu	37	17	3214341	3214341	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:3214341C>T	uc002fvi.2	+	1	803	c.737C>T	c.(736-738)TCC>TTC	p.S246F		NR_024128				RecName: Full=Olfactory receptor 3A4; AltName: Full=Olfactory receptor 17-24;          Short=OR17-24;											ovary(1)	1						ACGTGTAGTTCCCACCTCACT	0.567													30	73					0	0	1	0	0
ZMYND15	84225	broad.mit.edu	37	17	4647081	4647081	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:4647081C>T	uc002fyt.2	+	7	1356	c.1317C>T	c.(1315-1317)CTC>CTT	p.L439L	ZMYND15_uc002fyv.2_Silent_p.L439L|ZMYND15_uc002fyu.2_Silent_p.L439L	NM_032265	NP_115641	Q9H091	ZMY15_HUMAN	zinc finger, MYND-type containing 15 isoform 2	439							zinc ion binding				0						ACCAGCTTCTCCAGGGAGACG	0.632													11	26					0	0	1	0	0
MINK1	50488	broad.mit.edu	37	17	4796787	4796787	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:4796787C>T	uc010vsl.1	+	21	2655	c.2459C>T	c.(2458-2460)GCC>GTC	p.A820V	MINK1_uc010vsk.1_Missense_Mutation_p.A791V|MINK1_uc010vsm.1_Missense_Mutation_p.A800V|MINK1_uc010vsn.1_Missense_Mutation_p.A783V|MINK1_uc010vso.1_Missense_Mutation_p.A728V|MINK1_uc010vsp.1_Missense_Mutation_p.A281V	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	820					JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						CCCAAGAAGGCCATGGACTAC	0.647													17	55					0	0	1	0	0
KIF1C	10749	broad.mit.edu	37	17	4927425	4927425	+	Missense_Mutation	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:4927425G>T	uc002gan.1	+	23	3617	c.3291G>T	c.(3289-3291)AAG>AAT	p.K1097N		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	1097					microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						CTGACCTCAAGGAGAGTGGGG	0.672													21	69					3.08376e-08	3.13182e-08	1	1	0
C1QBP	708	broad.mit.edu	37	17	5338248	5338248	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:5338248G>A	uc002gby.1	-	3	500	c.422C>T	c.(421-423)CCA>CTA	p.P141L		NM_001212	NP_001203	Q07021	C1QBP_HUMAN	complement component 1, q subcomponent binding	141					blood coagulation, intrinsic pathway|immune response|interspecies interaction between organisms	mitochondrial matrix|nucleus|plasma membrane				ovary(1)	1						ATCAAATGTTGGTGGGATGCT	0.453													23	69					0	0	1	0	0
NLRP1	22861	broad.mit.edu	37	17	5485193	5485193	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:5485193C>T	uc002gci.2	-	3	1193	c.638G>A	c.(637-639)GGA>GAA	p.G213E	NLRP1_uc002gcg.1_Missense_Mutation_p.G213E|NLRP1_uc002gck.2_Missense_Mutation_p.G213E|NLRP1_uc002gcj.2_Missense_Mutation_p.G213E|NLRP1_uc002gcl.2_Missense_Mutation_p.G213E|NLRP1_uc002gch.3_Missense_Mutation_p.G213E|NLRP1_uc010clh.2_Missense_Mutation_p.G213E	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	213					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GTAGTAAATTCCTGACGTTTC	0.602													31	97					0	0	1	0	0
POLR2A	5430	broad.mit.edu	37	17	7401454	7401454	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:7401454C>T	uc002ghf.3	+	8	1494	c.1260C>T	c.(1258-1260)ATC>ATT	p.I420I	POLR2A_uc002ghe.2_Silent_p.I420I	NM_000937	NP_000928	P24928	RPB1_HUMAN	DNA-directed RNA polymerase II A	420					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|RNA-directed RNA polymerase activity|ubiquitin protein ligase binding			pancreas(1)	1		Prostate(122;0.173)				AGTACATCATCCGAGACAATG	0.532													21	63					0	0	1	0	0
ALOX15B	247	broad.mit.edu	37	17	7950012	7950012	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:7950012C>T	uc002gju.2	+	9	1343	c.1227C>T	c.(1225-1227)ACC>ACT	p.T409T	ALOX15B_uc002gjv.2_Intron|ALOX15B_uc002gjw.2_Intron|ALOX15B_uc010vun.1_Silent_p.T409T|ALOX15B_uc010cnp.2_Silent_p.T215T	NM_001141	NP_001132	O15296	LX15B_HUMAN	arachidonate 15-lipoxygenase, second type	409	Lipoxygenase.				induction of apoptosis|leukotriene biosynthetic process|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of growth|prostate gland development|regulation of epithelial cell differentiation	cytoplasm	arachidonate 15-lipoxygenase activity|iron ion binding|lipoxygenase activity			ovary(1)	1						CCCGATACACCCTGCACATCA	0.627													9	24					0	0	1	0	0
PFAS	5198	broad.mit.edu	37	17	8168223	8168223	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:8168223C>T	uc002gkr.2	+	18	2201	c.2060C>T	c.(2059-2061)TCT>TTT	p.S687F	PFAS_uc010vuv.1_Missense_Mutation_p.S263F|PFAS_uc002gks.2_5'Flank	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	687					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GTGGACCGCTCTGTGGGAGGC	0.642													3	12					0	0	1	0	0
MYH8	4626	broad.mit.edu	37	17	10295939	10295939	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:10295939C>T	uc002gmm.2	-	38	5583	c.5488G>A	c.(5488-5490)GAA>AAA	p.E1830K	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1830	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TGTTCATTTTCAACCTCTCCT	0.453									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				39	151					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10348126	10348126	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:10348126C>T	uc002gmn.2	-	38	5668	c.5557G>A	c.(5557-5559)GAA>AAA	p.E1853K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1853	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TAAGTGAGTTCCTTCACTCTT	0.428													32	112					0	0	1	0	0
MYH2	4620	broad.mit.edu	37	17	10443321	10443321	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:10443321C>T	uc010coi.2	-	12	1199	c.1071G>A	c.(1069-1071)GGG>GGA	p.G357G	uc002gml.1_Intron|MYH2_uc002gmp.3_Silent_p.G357G|MYH2_uc010coj.2_Silent_p.G357G	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	357	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCATCACAGCCCCCGTGAGCT	0.423													53	174					0	0	1	0	0
ELAC2	60528	broad.mit.edu	37	17	12896253	12896253	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:12896253C>T	uc002gnz.3	-	24	2458	c.2363G>A	c.(2362-2364)CGG>CAG	p.R788Q	ELAC2_uc002gnu.3_Missense_Mutation_p.R185Q|ELAC2_uc002gnv.3_Missense_Mutation_p.R416Q|ELAC2_uc002gnw.3_Missense_Mutation_p.R444Q|ELAC2_uc002gnx.3_Missense_Mutation_p.R548Q|ELAC2_uc010vvo.1_Missense_Mutation_p.R586Q|ELAC2_uc010vvp.1_Missense_Mutation_p.R769Q|ELAC2_uc010vvq.1_Missense_Mutation_p.R787Q|ELAC2_uc010vvr.1_Missense_Mutation_p.R748Q	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	788					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						CCGCACCTGCCGCAGCTCCCG	0.657									Hereditary_Prostate_Cancer				24	76					0	0	1	0	0
CCDC144A	9720	broad.mit.edu	37	17	16593955	16593955	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:16593955C>T	uc002gqk.1	+	1	317	c.241C>T	c.(241-243)CTT>TTT	p.L81F		NM_014695	NP_055510	A2RUR9	C144A_HUMAN	coiled-coil domain containing 144A	81											0						CCTGGAAGATCTTGGCGAGCT	0.632													47	161					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	16725522	16725522	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:16725522G>A	uc002gqq.1	-	1		c.372C>T								full-length cDNA clone CS0DI013YN06 of Placenta Cot 25-normalized of Homo sapiens (human).																		agccaccaccgaagccagcac	0.358													14	39					0	0	1	0	0
LGALS9C	654346	broad.mit.edu	37	17	18396080	18396080	+	Silent	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:18396080T>G	uc002gtw.2	+	10	901	c.831T>G	c.(829-831)GCT>GCG	p.A277A	LGALS9C_uc010vyb.1_Silent_p.A189A	NM_001040078	NP_001035167	Q6DKI2	LEG9C_HUMAN	galectin 9 like	277	Galectin 2.						sugar binding			ovary(1)	1						ATGAGAATGCTGTGGTCCGTA	0.572													5	95					0	0	1	0	0
FBXW10	10517	broad.mit.edu	37	17	18675954	18675954	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:18675954C>T	uc002guk.2	+	12	2468	c.2236C>T	c.(2236-2238)CCC>TCC	p.P746S	FBXW10_uc002guj.2_Missense_Mutation_p.P746S|FBXW10_uc002gul.2_Missense_Mutation_p.P775S|FBXW10_uc010cqh.1_Missense_Mutation_p.P693S	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	746										ovary(1)	1						AGGCAAACCTCCCAAGTCCCG	0.468													45	161					0	0	1	0	0
FAM83G	644815	broad.mit.edu	37	17	18874996	18874996	+	Silent	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:18874996T>A	uc002guw.2	-	6	2315	c.2148A>T	c.(2146-2148)GGA>GGT	p.G716G	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	716										ovary(1)|central_nervous_system(1)	2						ACCTAGGGGGTCCTGGGAAGC	0.622													16	44					0	0	1	0	0
SLC47A1	55244	broad.mit.edu	37	17	19470492	19470492	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:19470492C>T	uc002gvy.1	+	14	1346	c.1260C>T	c.(1258-1260)GGC>GGT	p.G420G	SLC47A1_uc002gvx.2_Silent_p.G420G|SLC47A1_uc010vyz.1_Silent_p.G397G|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Silent_p.G225G|SLC47A1_uc010vza.1_Silent_p.G132G|SLC47A1_uc010vzb.1_Silent_p.G154G|SLC47A1_uc010vzc.1_Silent_p.G92G	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	420	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					ATGTGGTTGGCCTCCCCATCG	0.547													44	161					0	0	1	0	0
SLC47A2	146802	broad.mit.edu	37	17	19611819	19611819	+	Missense_Mutation	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:19611819C>A	uc002gwe.3	-	7	708	c.533G>T	c.(532-534)GGA>GTA	p.G178V	SLC47A2_uc002gwg.3_Intron|SLC47A2_uc002gwf.3_Intron|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_Intron|SLC47A2_uc010cqs.1_Intron|SLC47A2_uc010cqt.1_Intron	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	178	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					CTTCAGCCATCCCTGTTGAGG	0.567													43	175					3.76604e-16	3.8447e-16	1	1	0
LGALS9B	284194	broad.mit.edu	37	17	20354887	20354887	+	Silent	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:20354887A>C	uc002gxa.1	-	10	896	c.831T>G	c.(829-831)GCT>GCG	p.A277A	LGALS9B_uc002gwz.1_Silent_p.A276A|LGALS9B_uc010vzh.1_Silent_p.A189A	NM_001042685	NP_001036150	Q3B8N2	LEG9B_HUMAN	galectin-9 like	277	Galectin 2.						sugar binding			skin(1)	1						TACGGACCACAGCATTCTCAT	0.572													13	49					0	0	1	0	0
C17orf51	339263	broad.mit.edu	37	17	21477534	21477534	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:21477534G>A	uc002gyx.1	-	1		c.198C>T						A8MQB3	CQ051_HUMAN	Homo sapiens cDNA FLJ12977 fis, clone NT2RP2006261.												0						cctgaggatgggatgccgcgc	0													4	20					0	0	1	0	0
UNC45B	146862	broad.mit.edu	37	17	33501375	33501375	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:33501375G>A	uc002hja.2	+	14	2048	c.1951G>A	c.(1951-1953)GAG>AAG	p.E651K	UNC45B_uc002hjb.2_Missense_Mutation_p.E649K|UNC45B_uc002hjc.2_Missense_Mutation_p.E649K|UNC45B_uc010cto.2_Missense_Mutation_p.E570K	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	651					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				CCAGACCAAGGAGCTGCTGGC	0.602													17	51					0	0	1	0	0
PPP1R1B	84152	broad.mit.edu	37	17	37786257	37786257	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:37786257G>A	uc002hrz.2	+	4	665	c.198G>A	c.(196-198)TCG>TCA	p.S66S	PPP1R1B_uc002hsa.2_Silent_p.S77S|PPP1R1B_uc010cvx.2_Intron|PPP1R1B_uc002hsb.2_Silent_p.S30S|PPP1R1B_uc002hsc.2_Silent_p.S30S	NM_032192	NP_115568	Q9UD71	PPR1B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	66					signal transduction	cytosol	protein kinase inhibitor activity|protein phosphatase inhibitor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			ATCTCAAGTCGAAGAGACCCA	0.597													17	63					0	0	1	0	0
TNS4	84951	broad.mit.edu	37	17	38643619	38643619	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:38643619G>A	uc010cxb.2	-	4	1121	c.957C>T	c.(955-957)AGC>AGT	p.S319S		NM_032865	NP_116254	Q8IZW8	TENS4_HUMAN	tensin 4 precursor	319	Ser-rich.				apoptosis|protein localization	cytoplasm|cytoskeleton|focal adhesion	actin binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(5;5.91e-05)			CTGAGCCAAGGCTGTGGAGGC	0.587													15	43					0	0	1	0	0
ITGA2B	3674	broad.mit.edu	37	17	42449740	42449740	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:42449740C>T	uc002igt.1	-	30	3144	c.3112G>A	c.(3112-3114)GGG>AGG	p.G1038R		NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	1038	Cytoplasmic (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	CATCACTCCCCCTCTTCATCA	0.582													5	28					0	0	1	0	0
C17orf104	284071	broad.mit.edu	37	17	42744143	42744143	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:42744143C>T	uc010czv.2	+	5	864	c.864C>T	c.(862-864)TAC>TAT	p.Y288Y	C17orf104_uc002igy.1_Silent_p.Y122Y|C17orf104_uc002igz.3_Silent_p.Y122Y|C17orf104_uc010wja.1_RNA|C17orf104_uc002iha.2_Silent_p.Y122Y	NM_001145080	NP_001138552	A2RUB1	CQ104_HUMAN	hypothetical protein LOC284071	288										central_nervous_system(1)	1						TTGATATCTACCATTATGGAA	0.353													10	33					0	0	1	0	0
ABCC3	8714	broad.mit.edu	37	17	48755183	48755183	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:48755183G>A	uc002isl.2	+	24	3537	c.3457G>A	c.(3457-3459)GAG>AAG	p.E1153K	ABCC3_uc002isn.2_5'Flank	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	1153	ABC transmembrane type-1 2.|Cytoplasmic (By similarity).				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CCACTTTTCGGAGACAGTGAC	0.537													57	186					0	0	1	0	0
LUC7L3	51747	broad.mit.edu	37	17	48823267	48823267	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:48823267C>T	uc002isr.2	+	8	997	c.880C>T	c.(880-882)CGT>TGT	p.R294C	LUC7L3_uc010wmw.1_Missense_Mutation_p.R218C|LUC7L3_uc002isq.2_Missense_Mutation_p.R294C|LUC7L3_uc002iss.2_Missense_Mutation_p.R294C	NM_006107	NP_006098	O95232	LC7L3_HUMAN	LUC7-like 3	294	Arg/Ser-rich.				apoptosis|mRNA processing|response to stress|RNA splicing	focal adhesion|nuclear speck	DNA binding|mRNA binding|protein binding				0						AAAGAGAAGTCGTTCACGAAG	0.328													11	26					0	0	1	0	0
CA10	56934	broad.mit.edu	37	17	49825013	49825013	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:49825013C>T	uc002itw.3	-	4	1431	c.445G>A	c.(445-447)GGA>AGA	p.G149R	CA10_uc002itu.3_Missense_Mutation_p.G78R|CA10_uc002itv.3_Missense_Mutation_p.G155R|CA10_uc002itx.3_Missense_Mutation_p.G149R|CA10_uc002ity.3_Missense_Mutation_p.G149R|CA10_uc002itz.2_Missense_Mutation_p.G149R	NM_020178	NP_064563	Q9NS85	CAH10_HUMAN	carbonic anhydrase X	149					brain development					ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(22;4.74e-06)			AAGGCCTGTCCATTGAGGAGG	0.502													33	138					0	0	1	0	0
ANKFN1	162282	broad.mit.edu	37	17	54520229	54520229	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:54520229C>T	uc002iun.1	+	9	1078	c.1043C>T	c.(1042-1044)TCG>TTG	p.S348L		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	348	Fibronectin type-III.									large_intestine(1)|ovary(1)	2						GTTCAAGTCTCGGCTTACAAT	0.438													12	63					0	0	1	0	0
SCN4A	6329	broad.mit.edu	37	17	62038750	62038750	+	Missense_Mutation	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:62038750T>G	uc002jds.1	-	11	1725	c.1648A>C	c.(1648-1650)AAG>CAG	p.K550Q		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	550					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	TGGGCGCACTTGTACCACCAT	0.582													49	203					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66938086	66938086	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:66938086G>A	uc002jhp.2	-	2	269	c.90C>T	c.(88-90)TCC>TCT	p.S30S	ABCA8_uc002jhq.2_Silent_p.S30S|ABCA8_uc010wqq.1_Silent_p.S30S|ABCA8_uc010wqr.1_Intron|ABCA8_uc002jhr.2_Silent_p.S30S|ABCA8_uc002jhs.2_Silent_p.S30S|ABCA8_uc002jht.2_Silent_p.S30S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	30	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					ATACCATTAAGGACTCTCTTT	0.378													16	46					0	0	1	0	0
C17orf28	283987	broad.mit.edu	37	17	72954844	72954844	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr17:72954844G>A	uc002jmj.3	-	10	1313	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F	C17orf28_uc010wrs.1_Silent_p.F187F	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	388	Helical; (Potential).					integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					TCTTCAGCACGAAGAAGAGGA	0.612											OREG0024721	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	28					0	0	1	0	0
COLEC12	81035	broad.mit.edu	37	18	334970	334970	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:334970C>T	uc002kkm.2	-	6	1803	c.1588G>A	c.(1588-1590)GGC>AGC	p.G530S		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	530	Collagen-like 3.|Extracellular (Potential).				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				CCTGGTGGGCCCGGGGGGCCT	0.716													3	18					0	0	1	0	0
LAMA1	284217	broad.mit.edu	37	18	6956647	6956647	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:6956647G>A	uc002knm.2	-	56	8176	c.8082C>T	c.(8080-8082)CCC>CCT	p.P2694P	LAMA1_uc002knk.2_5'Flank|LAMA1_uc002knl.2_Silent_p.P147P|LAMA1_uc010wzj.1_Silent_p.P2170P	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2694					axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAAAAGCCCGGGGCTCTGGCA	0.567													14	58					0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231617	7231617	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:7231617G>A	uc010wzk.1	+	1	481	c.481G>A	c.(481-483)GAC>AAC	p.D161N		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	161	LRR 4.									ovary(1)|liver(1)	2						ATGCTTCGCCGACCTCTCTAG	0.572													14	77					0	0	1	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258271	9258271	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:9258271C>T	uc002knv.2	+	9	5263	c.5006C>T	c.(5005-5007)CCA>CTA	p.P1669L	ANKRD12_uc002knw.2_Missense_Mutation_p.P1646L|ANKRD12_uc002knx.2_Missense_Mutation_p.P1646L|ANKRD12_uc010dkx.1_Missense_Mutation_p.P1376L	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1669						nucleus				ovary(2)|central_nervous_system(1)	3						GAACAAGATCCAAAACATTGT	0.363													14	35					0	0	1	0	0
C18orf1	753	broad.mit.edu	37	18	13621218	13621218	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:13621218C>T	uc002ksa.2	+	5	952	c.284C>T	c.(283-285)TCC>TTC	p.S95F	C18orf1_uc002ksb.2_Missense_Mutation_p.S95F|C18orf1_uc002kse.2_Missense_Mutation_p.S58F|C18orf1_uc002ksf.2_Missense_Mutation_p.S58F|C18orf1_uc002ksg.1_Missense_Mutation_p.S18F|C18orf1_uc002ksh.1_Missense_Mutation_p.S37F|C18orf1_uc002ksi.1_Missense_Mutation_p.S37F	NM_181481	NP_852146	O15165	CR001_HUMAN	hypothetical protein LOC753 isoform alpha 1	95	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3				READ - Rectum adenocarcinoma(73;0.0642)		TCCACGCGGTCCTTCATCAAC	0.632													13	69					0	0	1	0	0
MC5R	4161	broad.mit.edu	37	18	13826736	13826736	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:13826736G>A	uc010xaf.1	+	1	972	c.972G>A	c.(970-972)AGG>AGA	p.R324R		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	324	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						TTCCCAGAAGGGATTAAGCAC	0.522													14	70					0	0	1	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14763957	14763957	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:14763957G>A	uc010dlo.2	+	7	1273	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	365										ovary(1)|skin(1)	2						CACATGGGAGGAAAAAGAAAC	0.368													3	19					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21484573	21484573	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:21484573C>T	uc002kuq.2	+	51	6616	c.6530C>T	c.(6529-6531)ACC>ATC	p.T2177I	LAMA3_uc002kur.2_Missense_Mutation_p.T2121I|LAMA3_uc002kus.3_Missense_Mutation_p.T568I|LAMA3_uc002kut.3_Missense_Mutation_p.T512I	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2177	Domain II and I.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GATGCCGCCACCGCCTACGAG	0.617													4	17					0	0	1	0	0
LAMA3	3909	broad.mit.edu	37	18	21501018	21501018	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:21501018G>A	uc002kuq.2	+	61	8129	c.8043G>A	c.(8041-8043)TCG>TCA	p.S2681S	LAMA3_uc002kur.2_Silent_p.S2625S|LAMA3_uc002kus.3_Silent_p.S1072S|LAMA3_uc002kut.3_Silent_p.S1016S	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	2681	Laminin G-like 2.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAGACCATTCGGTACACCTTT	0.383													13	34					0	0	1	0	0
DSG4	147409	broad.mit.edu	37	18	28966761	28966761	+	Silent	SNP	G	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:28966761G>C	uc002kwq.2	+	3	330	c.195G>C	c.(193-195)TCG>TCC	p.S65S	DSG4_uc002kwr.2_Silent_p.S65S	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	65	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGGACAACTCGAAGAGGAACC	0.448													29	68					0	0	1	0	0
MALT1	10892	broad.mit.edu	37	18	56390483	56390484	+	Splice_Site	DNP	GG	AT	AT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:56390483_56390484GG>AT	uc002lhm.1	+	10	1480	c.1222_splice	c.e10+1	p.G408_splice	MALT1_uc002lhn.1_Splice_Site_p.G397_splice	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma						activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						GGGAGTATATGGTAAGATATTT	0.307			T	BIRC3	MALT								7	39					0	0	1	0	0
LMAN1	3998	broad.mit.edu	37	18	57014755	57014755	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:57014755C>T	uc002lhz.2	-	7	844	c.812G>A	c.(811-813)GGA>GAA	p.G271E		NM_005570	NP_005561	P49257	LMAN1_HUMAN	lectin, mannose-binding, 1 precursor	271	Lumenal (Potential).				blood coagulation|ER to Golgi vesicle-mediated transport|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|protein transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|ER-Golgi intermediate compartment membrane|Golgi membrane|integral to membrane	mannose binding|metal ion binding|unfolded protein binding			skin(1)	1		Colorectal(73;0.0946)			Antihemophilic Factor(DB00025)	CGGCTCTTTTCCAGGTTCAGT	0.264													8	15					0	0	1	0	0
CDH19	28513	broad.mit.edu	37	18	64172194	64172194	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:64172194C>T	uc002lkc.1	-	12	2312	c.2174G>A	c.(2173-2175)GGA>GAA	p.G725E	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_3'UTR	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	725	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				TGACCCTGTTCCCTCAAAAGC	0.453													27	62					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65180387	65180387	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:65180387C>T	uc002lke.1	-	2	2713	c.1489G>A	c.(1489-1491)GAA>AAA	p.E497K		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	487						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				TAGAGAGCTTCAGAAACAAAT	0.453													23	95					0	0	1	0	0
SALL3	27164	broad.mit.edu	37	18	76754779	76754779	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:76754779G>A	uc002lmt.2	+	2	2788	c.2788G>A	c.(2788-2790)GAA>AAA	p.E930K	SALL3_uc010dra.2_Missense_Mutation_p.E537K	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	930					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GGAGCCCCAGGAAATCCCGCT	0.552													3	14					0	0	1	0	0
ADNP2	22850	broad.mit.edu	37	18	77895176	77895176	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr18:77895176C>T	uc002lnw.2	+	4	2335	c.1880C>T	c.(1879-1881)CCC>CTC	p.P627L		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	627					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		CTGCCGGTTCCCCCTGGAGGC	0.617													11	45					0	0	1	0	0
PCSK4	54760	broad.mit.edu	37	19	1481873	1481873	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:1481873G>A	uc002ltb.1	-	15	2215	c.2153C>T	c.(2152-2154)ACC>ATC	p.T718I	C19orf25_uc010xgn.1_5'Flank|C19orf25_uc002lsy.3_5'Flank|C19orf25_uc010dsk.2_5'Flank|C19orf25_uc010xgo.1_5'Flank|C19orf25_uc002lsx.1_5'Flank|PCSK4_uc002lsz.2_Missense_Mutation_p.T205I|PCSK4_uc002lta.2_3'UTR	NM_017573	NP_060043	Q6UW60	PCSK4_HUMAN	proprotein convertase subtilisin/kexin type 4	718	Helical; (Potential).				proteolysis	integral to membrane	serine-type endopeptidase activity				0		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCTCCGAGGGTCACGGCCAG	0.716													5	16					0	0	1	0	0
ANKRD24	170961	broad.mit.edu	37	19	4217071	4217071	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:4217071G>A	uc010dtt.1	+	18	2190	c.1914G>A	c.(1912-1914)ATG>ATA	p.M638I	ANKRD24_uc002lzs.2_Missense_Mutation_p.M609I|ANKRD24_uc002lzt.2_Missense_Mutation_p.M610I	NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	638											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		TGGAGGCCATGGGGGTGGAGG	0.557													12	39					0	0	1	0	0
ANKRD24	170961	broad.mit.edu	37	19	4219687	4219687	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:4219687G>A	uc010dtt.1	+	19	3379	c.3103G>A	c.(3103-3105)GAA>AAA	p.E1035K		NM_133475	NP_597732	Q8TF21	ANR24_HUMAN	ankyrin repeat domain 24	1035	Potential.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0233)|STAD - Stomach adenocarcinoma(1328;0.181)		GACCGAGGCGGAAAGGGCTCG	0.667													15	58					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5754252	5754252	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:5754252C>T	uc002mda.2	+	13	1335	c.1274C>T	c.(1273-1275)CCT>CTT	p.P425L	TMEM146_uc010duj.1_Missense_Mutation_p.P83L	NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	425	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						TCCCTGATTCCTCTGGTAAGT	0.493													26	86					0	0	1	0	0
RFX2	5990	broad.mit.edu	37	19	6040081	6040081	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:6040081G>A	uc002meb.2	-	5	701	c.432C>T	c.(430-432)ATC>ATT	p.I144I	RFX2_uc002mec.2_Silent_p.I144I|RFX2_uc010xiy.1_Silent_p.I99I	NM_000635	NP_000626	P48378	RFX2_HUMAN	regulatory factor X2 isoform a	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			breast(4)|ovary(1)|skin(1)	6						CGCTGGAGACGATGGGGCTCC	0.692													10	22					0	0	1	0	0
C3	718	broad.mit.edu	37	19	6682195	6682195	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:6682195G>A	uc002mfm.2	-	34	4280	c.4218C>T	c.(4216-4218)TCC>TCT	p.S1406S	C3_uc002mfl.2_Silent_p.S142S	NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	1406					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		CAGTCATCATGGATATGTCCA	0.542													19	78					0	0	1	0	0
ANGPTL4	51129	broad.mit.edu	37	19	8430912	8430912	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:8430912G>A	uc002mjq.1	+	2	588	c.393G>A	c.(391-393)GAG>GAA	p.E131E	ANGPTL4_uc002mjr.1_Silent_p.E131E|ANGPTL4_uc010xkc.1_5'UTR	NM_139314	NP_647475	Q9BY76	ANGL4_HUMAN	angiopoietin-like 4 protein isoform a precursor	131	Potential.				angiogenesis|cell differentiation|cellular lipid metabolic process|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|positive regulation of angiogenesis|response to hypoxia|signal transduction|triglyceride homeostasis	extracellular space|proteinaceous extracellular matrix	enzyme inhibitor activity|receptor binding			ovary(1)	1						GGCACCTGGAGAAGCAGCACC	0.562													15	40					0	0	1	0	0
ZNF558	148156	broad.mit.edu	37	19	8922209	8922209	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:8922209G>A	uc002mkn.1	-	6	1187	c.957C>T	c.(955-957)CCC>CCT	p.P319P	ZNF558_uc010xkh.1_Silent_p.P248P|ZNF558_uc010dwg.1_Silent_p.P319P	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	319					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						TACATTCATAGGGTTTTTCTC	0.443													26	75					0	0	1	0	0
OR7D4	125958	broad.mit.edu	37	19	9325379	9325379	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:9325379G>A	uc002mla.1	-	1	135	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_001005191	NP_001005191	Q8NG98	OR7D4_HUMAN	olfactory receptor, family 7, subfamily D,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						CGGCCAGAATGATGAGCAGGT	0.552													25	114					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9578750	9578750	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:9578750G>A	uc002mlp.1	-	10	1083	c.873C>T	c.(871-873)TCC>TCT	p.S291S	ZNF560_uc010dwr.1_Silent_p.S185S	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	291	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						TGCCTTCAAAGGATTTATCTT	0.393													34	106					0	0	1	0	0
COL5A3	50509	broad.mit.edu	37	19	10079068	10079068	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:10079068C>T	uc002mmq.1	-	59	4393	c.4307G>A	c.(4306-4308)GGA>GAA	p.G1436E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1436	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CACAGGGTCTCCCTTGGGACC	0.607													40	145					0	0	1	0	0
CARM1	10498	broad.mit.edu	37	19	11022910	11022910	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:11022910C>T	uc002mpz.2	+	5	735	c.609C>T	c.(607-609)GCC>GCT	p.A203A	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_5'UTR	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	203					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						TTTTTGCCGCCCAAGCTGGAG	0.627													64	227					0	0	1	0	0
SMARCA4	6597	broad.mit.edu	37	19	11101966	11101966	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:11101966C>T	uc002mqf.3	+	8	1670	c.1386C>T	c.(1384-1386)ATC>ATT	p.I462I	SMARCA4_uc010dxp.2_Silent_p.I462I|SMARCA4_uc010dxo.2_Silent_p.I462I|SMARCA4_uc002mqg.1_Silent_p.I462I|SMARCA4_uc010dxq.2_Silent_p.I462I|SMARCA4_uc010dxr.2_Silent_p.I462I|SMARCA4_uc002mqj.3_Silent_p.I462I|SMARCA4_uc010dxs.2_Silent_p.I462I|SMARCA4_uc002mqe.2_Silent_p.I462I	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	462	HSA.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				AGCAGAAGATCGAGCAGGAGC	0.667			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				3	13					0	0	1	0	0
SMARCA4	6597	broad.mit.edu	37	19	11132428	11132428	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:11132428G>A	uc002mqf.3	+	19	2928	c.2644G>A	c.(2644-2646)GAA>AAA	p.E882K	SMARCA4_uc010dxp.2_Missense_Mutation_p.E882K|SMARCA4_uc010dxo.2_Missense_Mutation_p.E882K|SMARCA4_uc002mqg.1_Missense_Mutation_p.E882K|SMARCA4_uc010dxq.2_Missense_Mutation_p.E882K|SMARCA4_uc010dxr.2_Missense_Mutation_p.E882K|SMARCA4_uc002mqj.3_Missense_Mutation_p.E882K|SMARCA4_uc010dxs.2_Missense_Mutation_p.E882K|SMARCA4_uc010dxt.1_Missense_Mutation_p.E102K|SMARCA4_uc002mqh.3_Missense_Mutation_p.E5K|SMARCA4_uc002mqi.1_Missense_Mutation_p.E85K	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	882	Helicase ATP-binding.|DEGH box.				chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				GATTGTGGACGAAGGTCACCG	0.632			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				10	15					0	0	1	0	0
SMARCA4	6597	broad.mit.edu	37	19	11134267	11134267	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:11134267G>A	uc002mqf.3	+	20	3217	c.2933G>A	c.(2932-2934)CGA>CAA	p.R978Q	SMARCA4_uc010dxp.2_Missense_Mutation_p.R978Q|SMARCA4_uc010dxo.2_Missense_Mutation_p.R978Q|SMARCA4_uc002mqg.1_Missense_Mutation_p.R978Q|SMARCA4_uc010dxq.2_Missense_Mutation_p.R978Q|SMARCA4_uc010dxr.2_Missense_Mutation_p.R978Q|SMARCA4_uc002mqj.3_Missense_Mutation_p.R978Q|SMARCA4_uc010dxs.2_Missense_Mutation_p.R978Q|SMARCA4_uc010dxt.1_Missense_Mutation_p.R198Q|SMARCA4_uc002mqh.3_Missense_Mutation_p.R101Q|SMARCA4_uc002mqi.1_Missense_Mutation_p.R181Q	NM_003072	NP_003063	P51532	SMCA4_HUMAN	SWI/SNF-related matrix-associated	978					chromatin remodeling|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nuclear chromatin|SWI/SNF complex|WINAC complex	androgen receptor binding|ATP binding|DNA binding|DNA-dependent ATPase activity|helicase activity|histone acetyl-lysine binding|identical protein binding|p53 binding|protein N-terminus binding|transcription corepressor activity	p.?(1)		lung(29)|ovary(8)|pancreas(7)|large_intestine(5)|central_nervous_system(5)|skin(3)|prostate(3)|breast(2)|adrenal_gland(1)|stomach(1)|liver(1)|autonomic_ganglia(1)|kidney(1)	67		all_lung(6;0.0512)|Lung NSC(9;0.0568)				TTCTTGCTCCGACGACTCAAG	0.577			F|N|Mis		NSCLC				Rhabdoid_Predisposition_syndrome				13	20					0	0	1	0	0
BEST2	54831	broad.mit.edu	37	19	12866708	12866708	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:12866708G>A	uc002mux.2	+	7	907	c.907G>A	c.(907-909)GAT>AAT	p.D303N		NM_017682	NP_060152	Q8NFU1	BEST2_HUMAN	vitelliform macular dystrophy 2-like 1	303	Cytoplasmic (Potential).				membrane depolarization|sensory perception of smell	chloride channel complex|cilium|plasma membrane	chloride channel activity			ovary(1)|pancreas(1)	2						AGAGGACGATGATGACTTTGA	0.557													26	65					0	0	1	0	0
CACNA1A	773	broad.mit.edu	37	19	13445223	13445223	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:13445223G>A	uc010dze.2	-	8	1403	c.1167C>T	c.(1165-1167)CTC>CTT	p.L389L	CACNA1A_uc002mwy.3_Silent_p.L389L	NM_001127221	NP_001120693	O00555	CAC1A_HUMAN	calcium channel, alpha 1A subunit isoform 3	389	Binding to the beta subunit (By similarity).|Cytoplasmic (Potential).				cell death|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|membrane depolarization|regulation of insulin secretion	cytoplasm|nucleus	syntaxin binding			large_intestine(2)	2			OV - Ovarian serous cystadenocarcinoma(19;5.07e-21)		Bepridil(DB01244)|Cinnarizine(DB00568)|Loperamide(DB00836)|Nisoldipine(DB00401)|Pregabalin(DB00230)	TGTACCCATTGAGCTCACGTT	0.542													17	64					0	0	1	0	0
SLC1A6	6511	broad.mit.edu	37	19	15079115	15079115	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:15079115C>T	uc002naa.1	-	3	556	c.548G>A	c.(547-549)AGA>AAA	p.R183K	SLC1A6_uc010dzu.1_Missense_Mutation_p.R183K|SLC1A6_uc010xod.1_Intron|SLC1A6_uc002nab.2_Missense_Mutation_p.R183K|SLC1A6_uc002nac.2_Missense_Mutation_p.R183K|SLC1A6_uc002nad.1_Missense_Mutation_p.R183K	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	183	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	gttggcaCACCTGATCAGGTC	0.328													3	11					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15276261	15276261	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:15276261G>A	uc002nan.2	-	31	5809	c.5733C>T	c.(5731-5733)ATC>ATT	p.I1911I		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1911	Cytoplasmic (Potential).|ANK 3.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GGGCCGCCAGGATCAGTGCCG	0.572													11	41					0	0	1	0	0
BRD4	23476	broad.mit.edu	37	19	15376337	15376337	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:15376337G>A	uc002nar.2	-	5	899	c.677C>T	c.(676-678)CCT>CTT	p.P226L	BRD4_uc002nas.2_Missense_Mutation_p.P226L|BRD4_uc002nat.3_Missense_Mutation_p.P226L|BRD4_uc002nau.3_Missense_Mutation_p.P226L	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	226					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			GGTGACGGCAGGGAAGGGGTG	0.657			T	NUT|C15orf55	lethal midline carcinoma of young people								32	122					0	0	1	0	0
CYP4F8	11283	broad.mit.edu	37	19	15730487	15730487	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:15730487C>T	uc002nbi.2	+	5	503	c.439C>T	c.(439-441)CAC>TAC	p.H147Y	CYP4F8_uc010xoi.1_3'UTR|CYP4F8_uc010xoj.1_Intron	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	147					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						GTGGAGACACCACCGTCGCTT	0.502													7	42					0	0	1	0	0
B3GNT3	10331	broad.mit.edu	37	19	17922508	17922508	+	Silent	SNP	C	T	T	rs141805771		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:17922508C>T	uc002nhk.1	+	3	781	c.696C>T	c.(694-696)CAC>CAT	p.H232H	B3GNT3_uc002nhl.1_Silent_p.H232H|B3GNT3_uc010ebd.1_Silent_p.H232H|B3GNT3_uc010ebe.1_Silent_p.H232H	NM_014256	NP_055071	Q9Y2A9	B3GN3_HUMAN	UDP-GlcNAc:betaGal	232	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to plasma membrane	galactosyltransferase activity			upper_aerodigestive_tract(1)	1						CTGGCCGCCACCTCTTCGTGG	0.577													26	62					0	0	1	0	0
UPF1	5976	broad.mit.edu	37	19	18943028	18943028	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:18943028G>A	uc002nkg.2	+	1	285	c.10G>A	c.(10-12)GAG>AAG	p.E4K	UPF1_uc002nkf.2_Missense_Mutation_p.E4K	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	4	Sufficient for interaction with RENT2.				cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CATGAGCGTGGAGGCGTACGG	0.711													9	36					0	0	1	0	0
NCAN	1463	broad.mit.edu	37	19	19360599	19360599	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:19360599G>A	uc002nlz.2	+	15	3944	c.3845G>A	c.(3844-3846)CGA>CAA	p.R1282Q	NCAN_uc002nma.2_Missense_Mutation_p.D38N	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	1282				R -> G (in Ref. 1; AAC80576).	axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CGGATGCGGCGAcaccaccac	0.463													15	36					0	0	1	0	0
ZNF682	91120	broad.mit.edu	37	19	20117516	20117516	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:20117516G>A	uc002noq.2	-	4	918	c.795C>T	c.(793-795)GCC>GCT	p.A265A	ZNF682_uc002noo.2_Silent_p.A233A|ZNF682_uc002nop.2_Silent_p.A233A|ZNF682_uc010eck.2_Silent_p.A189A	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	265	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						ACCAGTGAAAGGCTTTTCCAC	0.408													22	82					0	0	1	0	0
CCNE1	898	broad.mit.edu	37	19	30313009	30313009	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:30313009C>T	uc002nsn.2	+	9	995	c.812C>T	c.(811-813)CCC>CTC	p.P271L	CCNE1_uc002nso.2_Missense_Mutation_p.P256L|CCNE1_uc002nsp.2_Missense_Mutation_p.P18L	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	271					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			CCGCAGTATCCCCAGCAAATC	0.488													33	85					0	0	1	0	0
ZNF599	148103	broad.mit.edu	37	19	35251304	35251304	+	Missense_Mutation	SNP	G	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:35251304G>C	uc010edn.1	-	4	790	c.402C>G	c.(400-402)AAC>AAG	p.N134K	ZNF599_uc010edm.1_Missense_Mutation_p.N97K	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	134					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			CTGGCCTCAAGTTCCCTTCCT	0.443													24	144					0	0	1	0	0
FXYD1	5348	broad.mit.edu	37	19	35633400	35633400	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:35633400G>A	uc002nyc.2	+	6	302	c.231G>A	c.(229-231)GAG>GAA	p.E77E	LGI4_uc002nxy.1_5'Flank|FXYD1_uc002nyd.2_Silent_p.E77E|FXYD7_uc010xsp.1_5'Flank|FXYD7_uc002nye.1_5'Flank|FXYD7_uc002nyf.1_5'Flank	NM_021902	NP_068702	O00168	PLM_HUMAN	phospholemman precursor	77	Cytoplasmic (Potential).				muscle contraction	chloride channel complex|integral to plasma membrane	chloride channel activity				0	all_lung(56;7.56e-09)|Lung NSC(56;1.1e-08)|Esophageal squamous(110;0.162)		Epithelial(14;2.32e-21)|OV - Ovarian serous cystadenocarcinoma(14;3.17e-20)|all cancers(14;2.43e-18)|LUSC - Lung squamous cell carcinoma(66;0.0849)			ATGAAGAGGAGGGAACTTTCC	0.622													15	77					0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	39016011	39016011	+	Missense_Mutation	SNP	C	T	T	rs147058802		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:39016011C>T	uc002oit.2	+	71	10625	c.10495C>T	c.(10495-10497)CGG>TGG	p.R3499W	RYR1_uc002oiu.2_Missense_Mutation_p.R3494W|RYR1_uc002oiv.1_Missense_Mutation_p.R414W|RYR1_uc010xuf.1_Missense_Mutation_p.R419W	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3499					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GAAGAAGCGCCGGGGGGACCG	0.488													18	75					0	0	1	0	0
ZNF546	339327	broad.mit.edu	37	19	40519997	40519997	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:40519997G>A	uc002oms.2	+	7	1076	c.820G>A	c.(820-822)GAA>AAA	p.E274K	ZNF546_uc002omt.2_Missense_Mutation_p.E248K	NM_178544	NP_848639	Q86UE3	ZN546_HUMAN	zinc finger protein 546	274	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GAGACCCTATGAATGTAAAGA	0.438													36	118					0	0	1	0	0
CEACAM21	90273	broad.mit.edu	37	19	42083885	42083885	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:42083885A>G	uc002ore.3	+	2	494	c.398A>G	c.(397-399)CAG>CGG	p.Q133R	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_RNA|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Missense_Mutation_p.Q133R	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	133	Extracellular (Potential).					integral to membrane				ovary(1)	1						CAGATTGAACAGGCATCTCAC	0.507													25	64					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42471468	42471468	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:42471468G>A	uc002osg.2	-	22	3100	c.2946C>T	c.(2944-2946)TTC>TTT	p.F982F	ATP1A3_uc010xwf.1_Silent_p.F993F|ATP1A3_uc010xwg.1_Silent_p.F952F|ATP1A3_uc010xwh.1_Silent_p.F995F|ATP1A3_uc002osh.2_Silent_p.F982F	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	982	Helical; (Potential).			F -> S (in Ref. 2; CAA31390).	ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						AACTGTAGGGGAAGGCACAGA	0.637													17	25					0	0	1	0	0
IRGC	56269	broad.mit.edu	37	19	44223535	44223535	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:44223535C>T	uc002oxh.2	+	2	972	c.825C>T	c.(823-825)GGC>GGT	p.G275G		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	275						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				TGGTGTTGGGCGTCATCCAGG	0.637													19	52					0	0	1	0	0
MARK4	57787	broad.mit.edu	37	19	45762442	45762442	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:45762442C>T	uc002pbb.1	+	2	252	c.247C>T	c.(247-249)CGG>TGG	p.R83W	MARK4_uc002paz.1_Intron|MARK4_uc002pba.1_Missense_Mutation_p.R83W			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	83	Protein kinase.				microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCTCACTGGTCGGGAGGTGAG	0.617													8	26					0	0	1	0	0
PPP1R13L	10848	broad.mit.edu	37	19	45898706	45898706	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:45898706G>A	uc002pbn.2	-	7	1419	c.1342C>T	c.(1342-1344)CCT>TCT	p.P448S	PPP1R13L_uc002pbm.2_5'Flank|PPP1R13L_uc002pbo.2_Missense_Mutation_p.P448S|PPP1R13L_uc002pbp.2_Missense_Mutation_p.P448S	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	448	Pro-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		TCGTTCACAGGGGGCCATGTC	0.388													2	0					0	0	1	0	0
PRR12	57479	broad.mit.edu	37	19	50105096	50105096	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:50105096C>T	uc002poo.3	+	6	4694	c.4694C>T	c.(4693-4695)GCC>GTC	p.A1565V		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	744							DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		GACGAGGAGGCCGGCGAGAGT	0.667													9	19					0	0	1	0	0
KLK14	43847	broad.mit.edu	37	19	51582165	51582165	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:51582165G>A	uc002pvs.1	-	6	777	c.558C>T	c.(556-558)TCC>TCT	p.S186S		NM_022046	NP_071329	Q9P0G3	KLK14_HUMAN	kallikrein 14 preproprotein	186	Peptidase S1.				epidermis morphogenesis|fertilization|negative regulation of G-protein coupled receptor protein signaling pathway|positive regulation of G-protein coupled receptor protein signaling pathway|proteolysis|seminal clot liquefaction	extracellular space	serine-type endopeptidase activity			skin(1)	1		all_neural(266;0.0199)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00422)		CCTCATCCGGGGAGATGTTGA	0.517													58	161					0	0	1	0	0
CEACAM18	729767	broad.mit.edu	37	19	51984797	51984797	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:51984797C>T	uc002pwv.1	+	4	734	c.734C>T	c.(733-735)TCC>TTC	p.S245F		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	245						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		ATGACAATTTCCCCAGACGGC	0.483													8	59					0	0	1	0	0
NLRP12	91662	broad.mit.edu	37	19	54310827	54310827	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:54310827C>T	uc002qch.3	-	4	2385	c.2165G>A	c.(2164-2166)CGA>CAA	p.R722Q	NLRP12_uc010eqw.2_5'UTR|NLRP12_uc002qci.3_Missense_Mutation_p.R722Q|NLRP12_uc002qcj.3_Missense_Mutation_p.R723Q|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.R723Q	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	722					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CAGGGCATTTCGGTACAGAGA	0.582													17	39					0	0	1	0	0
NLRP7	199713	broad.mit.edu	37	19	55449566	55449566	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:55449566G>A	uc002qih.3	-	5	2051	c.1975C>T	c.(1975-1977)CGC>TGC	p.R659C	NLRP7_uc002qig.3_Intron|NLRP7_uc002qii.3_Missense_Mutation_p.R659C|NLRP7_uc010esk.2_Missense_Mutation_p.R659C|NLRP7_uc010esl.2_Missense_Mutation_p.R687C	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	659							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CGAAGAGAGCGAAGATCCTGC	0.498													22	112					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423937	56423937	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:56423937C>T	uc010ygg.1	-	5	1271	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	416	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AAGAGAGTTTCGTTTTTTCTT	0.463													22	67					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56481962	56481962	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:56481962C>T	uc002qmh.2	+	6	2505	c.2434C>T	c.(2434-2436)CTT>TTT	p.L812F	NLRP8_uc010etg.2_Missense_Mutation_p.L812F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	812						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TGGCAATAATCTTCAAGGTAA	0.488													54	144					0	0	1	0	0
ZNF71	58491	broad.mit.edu	37	19	57133335	57133335	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:57133335C>T	uc002qnm.3	+	3	918	c.680C>T	c.(679-681)TCC>TTC	p.S227F		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	227	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		CGGAAGACTTCCTCTCTCACC	0.637													11	40					0	0	1	0	0
ZIM3	114026	broad.mit.edu	37	19	57647171	57647171	+	Silent	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:57647171T>C	uc002qnz.1	-	5	920	c.534A>G	c.(532-534)TCA>TCG	p.S178S		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	178	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GGCGTGACTTTGAACTGAATA	0.408													49	157					0	0	1	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189851	58189851	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:58189851G>A	uc002qpu.2	+	5	1577	c.880G>A	c.(880-882)GGA>AGA	p.G294R		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	294					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GAGCAATGAGGGAAATTCCAC	0.473													23	82					0	0	1	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028743	59028743	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:59028743G>A	uc002qtd.2	-	2	590	c.298C>T	c.(298-300)CTG>TTG	p.L100L	ZBTB45_uc002qte.2_Silent_p.L100L|ZBTB45_uc002qtf.2_Silent_p.L100L	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		AGCACCTGCAGGGCTTCACCC	0.642											OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	74					0	0	1	0	0
KIF3C	3797	broad.mit.edu	37	2	26152834	26152835	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:26152834_26152835GG>AA	uc002rgu.2	-	6	2761_2762	c.2104_2105CC>TT	c.(2104-2106)CCC>TTC	p.P702F	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_Missense_Mutation_p.P700F	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	702	Globular (Potential).				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTGTACCTGGGGTGGGACCCC	0.441													35	84					0	0	1	0	0
ALK	238	broad.mit.edu	37	2	29519898	29519898	+	Missense_Mutation	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:29519898C>A	uc002rmy.2	-	9	2580	c.1673G>T	c.(1672-1674)GGA>GTA	p.G558V		NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	558	MAM 2.|Extracellular (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CCTCAAGACTCCACGAATGAG	0.537			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				15	60					1.15088e-07	1.16428e-07	1	1	0
XDH	7498	broad.mit.edu	37	2	31602786	31602786	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:31602786G>A	uc002rnv.1	-	13	1268	c.1189C>T	c.(1189-1191)CTG>TTG	p.L397L		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	397	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GGGCTCAGCAGGGTCTTTCTG	0.527													23	87					0	0	1	0	0
LTBP1	4052	broad.mit.edu	37	2	33505195	33505195	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:33505195G>A	uc002ros.2	+	19	3085	c.3085G>A	c.(3085-3087)GGA>AGA	p.G1029R	LTBP1_uc002rot.2_Missense_Mutation_p.G703R|LTBP1_uc002rou.2_Missense_Mutation_p.G702R|LTBP1_uc002rov.2_Missense_Mutation_p.G649R|LTBP1_uc010ymz.1_Missense_Mutation_p.G702R|LTBP1_uc010yna.1_Missense_Mutation_p.G649R	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1028	EGF-like 7; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CTGCACAGAAGGATTCCGAGG	0.428													22	68					0	0	1	0	0
CDKL4	344387	broad.mit.edu	37	2	39431685	39431685	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:39431685C>T	uc002rrm.2	-	4	437	c.437G>A	c.(436-438)GGG>GAG	p.G146E	CDKL4_uc010fal.1_Missense_Mutation_p.G146E	NM_001009565	NP_001009565	Q5MAI5	CDKL4_HUMAN	cyclin-dependent kinase-like 4	146	Protein kinase.					cytoplasm	ATP binding|cyclin-dependent protein kinase activity			ovary(1)	1		all_hematologic(82;0.248)				TTGTGCAAACCCGAAGTCACA	0.279													8	36					0	0	1	0	0
SLC8A1	6546	broad.mit.edu	37	2	40656791	40656791	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:40656791C>T	uc002rrx.2	-	1	654	c.630G>A	c.(628-630)TGG>TGA	p.W210*	SLC8A1_uc002rry.2_Nonsense_Mutation_p.W210*|SLC8A1_uc002rrz.2_Nonsense_Mutation_p.W210*|SLC8A1_uc002rsa.2_Nonsense_Mutation_p.W210*|SLC8A1_uc002rsd.3_Nonsense_Mutation_p.W210*|SLC8A1_uc002rsb.1_Nonsense_Mutation_p.W210*|SLC8A1_uc010fan.1_Nonsense_Mutation_p.W210*|SLC8A1_uc002rsc.1_Nonsense_Mutation_p.W210*	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	210	Helical; (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	CAAAGATGCTCCAGGCTGCTG	0.433													11	45					0	0	1	0	0
MSH6	2956	broad.mit.edu	37	2	48023039	48023039	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:48023039A>G	uc002rwd.3	+	3	616	c.464A>G	c.(463-465)AAA>AGA	p.K155R	MSH6_uc002rwc.2_Missense_Mutation_p.K155R|MSH6_uc010fbj.2_Intron|MSH6_uc010yoi.1_Intron|MSH6_uc010yoj.1_5'UTR	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	155					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CTAGGTTCAAAATCAAAGGAA	0.244			Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				6	44					0	0	1	0	0
LHCGR	3973	broad.mit.edu	37	2	48936112	48936112	+	Missense_Mutation	SNP	G	A	A	rs149917479		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:48936112G>A	uc002rwu.3	-	8	725	c.655C>T	c.(655-657)CGT>TGT	p.R219C	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	219	Extracellular (Potential).|LRR 5.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	GTGGCCCCACGGAAGGCTCCA	0.542									Familial_Male-Limited_Precocious_Puberty				30	114					0	0	1	0	0
KIAA1841	84542	broad.mit.edu	37	2	61300669	61300669	+	Missense_Mutation	SNP	G	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:61300669G>C	uc002saw.3	+	5	717	c.414G>C	c.(412-414)ATG>ATC	p.M138I	KIAA1841_uc002sax.3_Intron|KIAA1841_uc002say.2_Missense_Mutation_p.M138I|KIAA1841_uc002sav.3_Missense_Mutation_p.M138I	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	138											0			Epithelial(17;0.193)			GTGGAGAAATGACTGAAGAAT	0.328													7	41					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71827915	71827915	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:71827915G>A	uc002sie.2	+	34	4162	c.3786G>A	c.(3784-3786)AGG>AGA	p.R1262R	DYSF_uc010feg.2_Silent_p.R1293R|DYSF_uc010feh.2_Silent_p.R1248R|DYSF_uc002sig.3_Silent_p.R1248R|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.R1262R|DYSF_uc010fef.2_Silent_p.R1279R|DYSF_uc010fei.2_Silent_p.R1279R|DYSF_uc010fek.2_Silent_p.R1280R|DYSF_uc010fej.2_Silent_p.R1249R|DYSF_uc010fel.2_Silent_p.R1249R|DYSF_uc010feo.2_Silent_p.R1294R|DYSF_uc010fem.2_Silent_p.R1263R|DYSF_uc010fen.2_Silent_p.R1280R|DYSF_uc002sif.2_Silent_p.R1263R|DYSF_uc010yqy.1_Silent_p.R143R|DYSF_uc010yqz.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1262	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CACTGACGAGGGGCAGCCAGC	0.607													34	107					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71896784	71896784	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:71896784C>T	uc002sie.2	+	50	5951	c.5575C>T	c.(5575-5577)CGT>TGT	p.R1859C	DYSF_uc010feg.2_Missense_Mutation_p.R1890C|DYSF_uc010feh.2_Missense_Mutation_p.R1866C|DYSF_uc002sig.3_Missense_Mutation_p.R1845C|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.R1880C|DYSF_uc010fef.2_Missense_Mutation_p.R1897C|DYSF_uc010fei.2_Missense_Mutation_p.R1876C|DYSF_uc010fek.2_Missense_Mutation_p.R1877C|DYSF_uc010fej.2_Missense_Mutation_p.R1867C|DYSF_uc010fel.2_Missense_Mutation_p.R1846C|DYSF_uc010feo.2_Missense_Mutation_p.R1891C|DYSF_uc010fem.2_Missense_Mutation_p.R1881C|DYSF_uc010fen.2_Missense_Mutation_p.R1898C|DYSF_uc002sif.2_Missense_Mutation_p.R1860C|DYSF_uc010yqy.1_Missense_Mutation_p.R740C|DYSF_uc010yqz.1_Missense_Mutation_p.R620C	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1859	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CGTGCATTATCGTTCCCTGGG	0.438													29	102					0	0	1	0	0
CCT7	10574	broad.mit.edu	37	2	73466833	73466833	+	Silent	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:73466833G>T	uc002siz.2	+	2	171	c.69G>T	c.(67-69)GTG>GTT	p.V23V	CCT7_uc002sja.2_Intron|CCT7_uc010yrf.1_5'UTR|CCT7_uc010feu.2_Silent_p.V23V|CCT7_uc010yrg.1_5'UTR|CCT7_uc010yrh.1_5'UTR|CCT7_uc010yri.1_Intron	NM_006429	NP_006420	Q99832	TCPH_HUMAN	chaperonin containing TCP1, subunit 7 isoform a	23					'de novo' posttranslational protein folding		ATP binding|unfolded protein binding				0						CCCAGCTTGTGAGTAACATCA	0.468													7	32					0.000157383	0.000157989	1	1	0
REG3A	5068	broad.mit.edu	37	2	79384774	79384774	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:79384774C>T	uc002sod.1	-	4	639	c.384G>A	c.(382-384)ATG>ATA	p.M128I	REG3A_uc002soe.1_Missense_Mutation_p.M128I|REG3A_uc002sof.1_Missense_Mutation_p.M128I	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	128	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						CAAAGTAATTCATCACATCAC	0.547													19	93					0	0	1	0	0
SUCLG1	8802	broad.mit.edu	37	2	84668385	84668385	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:84668385G>A	uc002son.2	-	4	710	c.517C>T	c.(517-519)CCT>TCT	p.P173S	SUCLG1_uc010ysk.1_Missense_Mutation_p.P160S	NM_003849	NP_003840	P53597	SUCA_HUMAN	succinate-CoA ligase, GDP-forming alpha subunit	173					tricarboxylic acid cycle		ATP citrate synthase activity|GTP binding|succinate-CoA ligase (GDP-forming) activity				0					Succinic acid(DB00139)	ATGACTCCAGGGCAGTTGGGC	0.458													22	82					0	0	1	0	0
NMS	129521	broad.mit.edu	37	2	101097591	101097591	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:101097591C>T	uc002tan.1	+	8	383	c.376C>T	c.(376-378)CAC>TAC	p.H126Y		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	126					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						GTTGCAGGATCACACTGCGAC	0.373													34	115					0	0	1	0	0
IL1R1	3554	broad.mit.edu	37	2	102791057	102791057	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:102791057C>T	uc002tbq.2	+	10	1320	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	IL1R1_uc010fix.2_Silent_p.F334F|IL1R1_uc002tbp.2_Silent_p.F334F|IL1R1_uc002tbr.2_Silent_p.F334F	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	334	Extracellular (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	TCACTAATTTCCAGAAGCACA	0.303													12	29					0	0	1	0	0
IL1R1	3554	broad.mit.edu	37	2	102791117	102791117	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:102791117C>T	uc002tbq.2	+	10	1380	c.1062C>T	c.(1060-1062)TTC>TTT	p.F354F	IL1R1_uc010fix.2_Silent_p.F354F|IL1R1_uc002tbp.2_Silent_p.F354F|IL1R1_uc002tbr.2_Silent_p.F354F	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	354	Helical; (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	GTTCTGTTTTCATCTATAAAA	0.323													20	49					0	0	1	0	0
SLC5A7	60482	broad.mit.edu	37	2	108609540	108609540	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:108609540G>A	uc002tdv.2	+	4	681	c.405G>A	c.(403-405)CTG>CTA	p.L135L	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Silent_p.L135L|SLC5A7_uc010ywn.1_Silent_p.L22L	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	135	Helical; (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TTCCTGCACTGATGGGAGAAA	0.443													29	52					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112754998	112754998	+	Missense_Mutation	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:112754998T>A	uc002thk.1	+	10	1671	c.1549T>A	c.(1549-1551)TTG>ATG	p.L517M	MERTK_uc002thl.1_Missense_Mutation_p.L341M	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	517	Helical; (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TTTGATTGGGTTGATTTTATA	0.458													28	112					0	0	1	0	0
IL1A	3552	broad.mit.edu	37	2	113537239	113537239	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:113537239G>A	uc002tig.2	-	5	1284	c.324C>T	c.(322-324)ATC>ATT	p.I108I		NM_000575	NP_000566	P01583	IL1A_HUMAN	interleukin 1, alpha proprotein	108					anti-apoptosis|apoptosis|cell proliferation|cellular response to heat|cytokine-mediated signaling pathway|fever generation|immune response|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of cell division|positive regulation of cytokine secretion|positive regulation of interleukin-2 biosynthetic process|positive regulation of mitosis|positive regulation vascular endothelial growth factor production|response to copper ion	cytosol|extracellular space	copper ion binding|cytokine activity|interleukin-1 receptor binding			lung(1)	1						TAGGCTTGATGATTTCTAAAA	0.388													22	86					0	0	1	0	0
DPP10	57628	broad.mit.edu	37	2	115200379	115200379	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:115200379C>T	uc002tla.1	+	1	481	c.24C>T	c.(22-24)TCC>TCT	p.S8S		NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	8	Mediates effects on KCND2.|Cytoplasmic (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CCAGCGTGTCCCATCACATCA	0.473													13	41					0	0	1	0	0
EN1	2019	broad.mit.edu	37	2	119604321	119604321	+	Silent	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:119604321C>G	uc002tlm.2	-	1	1439	c.423G>C	c.(421-423)CGG>CGC	p.R141R		NM_001426	NP_001417	Q05925	HME1_HUMAN	engrailed homeobox 1	141					skeletal system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|lung(1)	2						CACGCTCGACCCGGCCTCCTC	0.706													4	34					0	0	1	0	0
MARCO	8685	broad.mit.edu	37	2	119739977	119739977	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:119739977G>A	uc002tln.1	+	12	1186	c.1054G>A	c.(1054-1056)GGG>AGG	p.G352R	MARCO_uc010yyf.1_Missense_Mutation_p.G274R	NM_006770	NP_006761	Q9UEW3	MARCO_HUMAN	macrophage receptor with collagenous structure	352	Collagen-like.|Extracellular (Potential).				cell surface receptor linked signaling pathway|innate immune response	collagen|integral to plasma membrane	pattern recognition receptor activity|scavenger receptor activity			ovary(3)|skin(2)|central_nervous_system(1)	6						AGGAAGCAAAGGGGACACAGG	0.582													41	142					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	131976362	131976362	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:131976362G>A	uc002tsn.2	+	1	439	c.387G>A	c.(385-387)ATG>ATA	p.M129I	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_5'UTR|POTEE_uc002tsl.2_5'UTR	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	129							ATP binding				0						GCGCCTTCATGGAGCCCAGGT	0.602													20	107					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141232749	141232749	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:141232749G>A	uc002tvj.1	-	60	10555	c.9583C>T	c.(9583-9585)CAC>TAC	p.H3195Y		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3195	Extracellular (Potential).|LDL-receptor class B 31.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AATTCAATGTGATTTTCATCG	0.338										TSP Lung(27;0.18)			27	71					0	0	1	0	0
KCNH7	90134	broad.mit.edu	37	2	163360985	163360985	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:163360985G>A	uc002uch.1	-	6	1308	c.1096C>T	c.(1096-1098)CGA>TGA	p.R366*	KCNH7_uc002uci.2_Nonsense_Mutation_p.R359*	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	366	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TTGTGTGTTCGATCTTTAACC	0.373													59	126					0	0	1	0	0
GRB14	2888	broad.mit.edu	37	2	165353893	165353893	+	Silent	SNP	G	A	A	rs147507583	byFrequency	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:165353893G>A	uc002ucl.2	-	10	1753	c.1212C>T	c.(1210-1212)CTC>CTT	p.L404L	GRB14_uc010zcv.1_Silent_p.L317L|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	404					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CCCTCCAAGCGAGTCCTTCTT	0.408													29	125					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	166019296	166019296	+	Missense_Mutation	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:166019296T>G	uc002ucx.2	-	8	1229	c.737A>C	c.(736-738)AAG>ACG	p.K246T	SCN3A_uc002ucy.2_Missense_Mutation_p.K246T|SCN3A_uc002ucz.2_Missense_Mutation_p.K246T|SCN3A_uc002uda.1_Missense_Mutation_p.K115T|SCN3A_uc002udb.1_Missense_Mutation_p.K115T	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	246						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	ATCAGAAAGCTTCTTTACCGA	0.458													20	146					0	0	1	0	0
SCN3A	6328	broad.mit.edu	37	2	166026969	166026969	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:166026969C>T	uc002ucx.2	-	4	846	c.354G>A	c.(352-354)AGG>AGA	p.R118R	SCN3A_uc002ucy.2_Silent_p.R118R|SCN3A_uc002ucz.2_Silent_p.R118R|SCN3A_uc002uda.1_5'Flank|SCN3A_uc002udb.1_5'Flank	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	118						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TAGCAATTTTCCTAACAGGGT	0.303													14	42					0	0	1	0	0
CSRNP3	80034	broad.mit.edu	37	2	166535800	166535800	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:166535800C>T	uc002udf.2	+	7	1671	c.1295C>T	c.(1294-1296)TCT>TTT	p.S432F	CSRNP3_uc002udg.2_Missense_Mutation_p.S432F	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	432					apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						TATGCCAACTCTTCAACTCTG	0.423													46	118					0	0	1	0	0
LRP2	4036	broad.mit.edu	37	2	170062081	170062081	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:170062081G>A	uc002ues.2	-	41	7836	c.7623C>T	c.(7621-7623)TTC>TTT	p.F2541F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2541	LDL-receptor class B 27.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGGGTACGCGGAAGTTTCCTC	0.488													37	67					0	0	1	0	0
EVX2	344191	broad.mit.edu	37	2	176948377	176948377	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:176948377G>A	uc010zeu.1	-	1	314	c.128C>T	c.(127-129)TCG>TTG	p.S43L		NM_001080458	NP_001073927	Q03828	EVX2_HUMAN	even-skipped homeobox 2	43						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	READ - Rectum adenocarcinoma(9;0.0678)|Colorectal(32;0.115)		CGGGTGCTGCGAATTTTCCAG	0.602													9	70					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179542417	179542417	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:179542417C>T	uc010zfg.1	-	143	30714	c.30490G>A	c.(30490-30492)GAA>AAA	p.E10164K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E6825K|TTN_uc010fre.1_Intron|TTN_uc002una.1_RNA|TTN_uc010frf.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11091							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTCTTCTTCCTCAGGTACA	0.448													45	80					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179710443	179710443	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:179710443C>T	uc002unf.1	-	12	1716	c.1659G>A	c.(1657-1659)CCG>CCA	p.P553P	CCDC141_uc002une.1_Silent_p.P3P	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	553							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CTTCCAAATTCGGATTCATCT	0.368													18	38					0	0	1	0	0
HECW2	57520	broad.mit.edu	37	2	197183995	197183995	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:197183995G>A	uc002utm.1	-	9	1802	c.1619C>T	c.(1618-1620)TCC>TTC	p.S540F	HECW2_uc002utl.1_Missense_Mutation_p.S184F	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	540					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TGCAGGTAAGGAGCTCTCTGC	0.562													16	54					0	0	1	0	0
PARD3B	117583	broad.mit.edu	37	2	205990441	205990441	+	Missense_Mutation	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:205990441C>A	uc002var.1	+	10	1621	c.1414C>A	c.(1414-1416)CAT>AAT	p.H472N	PARD3B_uc010fub.1_Missense_Mutation_p.H472N|PARD3B_uc002vao.1_Missense_Mutation_p.H472N|PARD3B_uc002vap.1_Missense_Mutation_p.H472N|PARD3B_uc002vaq.1_Missense_Mutation_p.H472N	NM_152526	NP_689739	Q8TEW8	PAR3L_HUMAN	par-3 partitioning defective 3 homolog B isoform	472					cell cycle|cell division	endomembrane system|tight junction				skin(2)|ovary(1)|breast(1)	4		all_cancers(1;2.88e-06)|all_epithelial(1;3.23e-06)		Epithelial(149;0.0739)		CCAAGAAGGACATTTTCTGCC	0.498													33	101					2.42023e-17	2.47401e-17	1	1	0
PTH2R	5746	broad.mit.edu	37	2	209358099	209358099	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:209358099G>A	uc002vdb.2	+	13	1581	c.1368G>A	c.(1366-1368)ACG>ACA	p.T456T	PTH2R_uc010zjb.1_Silent_p.T467T|PTH2R_uc010fuo.1_Intron	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	456	Cytoplasmic (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		CCACCGTGACGCACAGCACCA	0.607													11	39					0	0	1	0	0
C2orf67	151050	broad.mit.edu	37	2	210940450	210940450	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:210940450G>A	uc002vds.2	-	6	1789	c.1581C>T	c.(1579-1581)TCC>TCT	p.S527S	C2orf67_uc002vdt.2_Silent_p.S527S|C2orf67_uc002vdw.2_Silent_p.S527S|C2orf67_uc002vdv.2_Silent_p.S527S|C2orf67_uc002vdx.1_Silent_p.S527S	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	527										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		AGCTACTGGAGGAAGACAGCT	0.353													7	41					0	0	1	0	0
ABCA12	26154	broad.mit.edu	37	2	215815680	215815680	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:215815680G>A	uc002vew.2	-	45	6995	c.6775C>T	c.(6775-6777)CTC>TTC	p.L2259F	ABCA12_uc002vev.2_Missense_Mutation_p.L1941F|ABCA12_uc010zjn.1_Missense_Mutation_p.L1186F	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	2259	ABC transporter 2.				cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		GTCTTTGTGAGACAATAAAGT	0.408													39	112					0	0	1	0	0
PNKD	25953	broad.mit.edu	37	2	219204780	219204780	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:219204780C>T	uc002vhn.2	+	4	525	c.381C>T	c.(379-381)CTC>CTT	p.L127L	PNKD_uc002vhq.2_Silent_p.L103L	NM_015488	NP_056303	Q8N490	PNKD_HUMAN	myofibrillogenesis regulator 1 isoform 1	127						membrane|mitochondrion|nucleus	hydroxyacylglutathione hydrolase activity|zinc ion binding				0		Renal(207;0.0474)		Epithelial(149;7.33e-07)|all cancers(144;0.000133)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCCCTGTCCTCTCGGACAACT	0.647													18	52					0	0	1	0	0
VIL1	7429	broad.mit.edu	37	2	219301314	219301314	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:219301314G>A	uc002via.2	+	16	2001	c.1936G>A	c.(1936-1938)GAG>AAG	p.E646K	VIL1_uc010zke.1_Missense_Mutation_p.E335K|VIL1_uc002vib.2_Missense_Mutation_p.E646K	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	646	Gelsolin-like 6.|Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGACTTGGAAGAGGATGATGT	0.557													40	144					0	0	1	0	0
ARMC9	80210	broad.mit.edu	37	2	232087527	232087527	+	Silent	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:232087527A>G	uc002vrq.3	+	6	703	c.591A>G	c.(589-591)ACA>ACG	p.T197T	ARMC9_uc002vrp.3_Silent_p.T197T	NM_025139	NP_079415	Q7Z3E5	ARMC9_HUMAN	armadillo repeat containing 9	197							binding			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0744)|all_hematologic(139;0.0749)|Acute lymphoblastic leukemia(138;0.167)|Medulloblastoma(418;0.184)|Lung NSC(271;0.205)		Epithelial(121;1.43e-10)|LUSC - Lung squamous cell carcinoma(224;0.017)|Lung(119;0.0189)		AGCTTTTAACAATATATGTAT	0.363													8	38					0	0	1	0	0
INPP5D	3635	broad.mit.edu	37	2	233990529	233990529	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr2:233990529G>A	uc010zmo.1	+	4	577	c.424G>A	c.(424-426)GAG>AAG	p.E142K	INPP5D_uc010zmp.1_Missense_Mutation_p.E141K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	142					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TGAGGCCAAGGAGGTTCCTTT	0.582													4	30					0	0	1	0	0
ZNF343	79175	broad.mit.edu	37	20	2464742	2464742	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:2464742G>A	uc002wge.1	-	6	1353	c.865C>T	c.(865-867)CGT>TGT	p.R289C	ZNF343_uc010gao.1_Missense_Mutation_p.R289C|ZNF343_uc002wgd.1_Missense_Mutation_p.R199C	NM_024325	NP_077301	Q6P1L6	ZN343_HUMAN	zinc finger protein 343	289	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GAGTGTATACGATGGTGTCTG	0.478													28	83					0	0	1	0	0
PROKR2	128674	broad.mit.edu	37	20	5294605	5294605	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:5294605G>A	uc010zqw.1	-	1	411	c.411C>T	c.(409-411)GTC>GTT	p.V137V	PROKR2_uc010zqx.1_Silent_p.V137V|PROKR2_uc010zqy.1_Silent_p.V137V|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	137	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						CGTAGAGGGAGACGGTGCGCA	0.612										HNSCC(71;0.22)			10	35					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9391729	9391729	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:9391729C>T	uc002wnf.2	+	23	2145	c.2009C>T	c.(2008-2010)TCG>TTG	p.S670L	PLCB4_uc010gbw.1_Missense_Mutation_p.S670L|PLCB4_uc010gbx.2_Missense_Mutation_p.S682L|PLCB4_uc002wne.2_Missense_Mutation_p.S670L|PLCB4_uc002wnh.2_Missense_Mutation_p.S517L	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	670	PI-PLC Y-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TATAATGGATCGTGCGGGTGA	0.363													10	56					0	0	1	0	0
C20orf26	26074	broad.mit.edu	37	20	20150033	20150033	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:20150033G>A	uc002wru.2	+	13	1390	c.1314G>A	c.(1312-1314)GTG>GTA	p.V438V	C20orf26_uc010zse.1_Silent_p.V418V|C20orf26_uc010zsf.1_Silent_p.V438V	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	438										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		AGAACTTCGTGAAAATGGTCC	0.488													26	73					0	0	1	0	0
TM9SF4	9777	broad.mit.edu	37	20	30734616	30734616	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:30734616C>T	uc002wxj.2	+	9	1147	c.912C>T	c.(910-912)ACC>ACT	p.T304T	TM9SF4_uc010ztr.1_Silent_p.T230T|TM9SF4_uc010zts.1_Silent_p.T211T|TM9SF4_uc002wxk.2_Silent_p.T287T|TM9SF4_uc010gdz.2_Silent_p.T211T	NM_014742	NP_055557	Q92544	TM9S4_HUMAN	transmembrane 9 superfamily protein member 4	304						integral to membrane				central_nervous_system(1)|pancreas(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TCATTCGGACCCTCCGGAAGG	0.547													7	35					0	0	1	0	0
NDRG3	57446	broad.mit.edu	37	20	35299773	35299773	+	Missense_Mutation	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:35299773C>G	uc002xfw.2	-	9	641	c.559G>C	c.(559-561)GAC>CAC	p.D187H	NDRG3_uc002xfx.2_Missense_Mutation_p.D175H|NDRG3_uc010zvq.1_Missense_Mutation_p.D92H|NDRG3_uc010zvr.1_Missense_Mutation_p.D75H	NM_032013	NP_114402	Q9UGV2	NDRG3_HUMAN	N-myc downstream regulated gene 3 isoform a	187					cell differentiation|negative regulation of cell growth|spermatogenesis	cytoplasm				ovary(1)	1		Myeloproliferative disorder(115;0.00878)				AAAATAATGTCCACAACATTG	0.308													17	63					0	0	1	0	0
TOX2	84969	broad.mit.edu	37	20	42683150	42683150	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:42683150G>A	uc002xlf.3	+	5	907	c.890G>A	c.(889-891)GGA>GAA	p.G297E	TOX2_uc010ggo.2_Missense_Mutation_p.G288E|TOX2_uc002xle.3_Missense_Mutation_p.G246E|TOX2_uc010ggp.2_Missense_Mutation_p.G246E|TOX2_uc002xlg.2_Missense_Mutation_p.G246E|TOX2_uc010zwk.1_Missense_Mutation_p.G166E	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	297	HMG box.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GACAGCCTGGGAGAGGAACAG	0.567													10	28					0	0	1	0	0
CDH22	64405	broad.mit.edu	37	20	44845478	44845478	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:44845478G>A	uc002xrm.2	-	4	1226	c.825C>T	c.(823-825)CCC>CCT	p.P275P	CDH22_uc010ghk.1_Silent_p.P275P|CDH22_uc002xrn.1_Silent_p.P26P	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	275	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				GCGGGAAACGGGGCGGGTTGT	0.612													19	93					0	0	1	0	0
ADNP	23394	broad.mit.edu	37	20	49509384	49509384	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:49509384G>A	uc002xvt.1	-	5	2212	c.1867C>T	c.(1867-1869)CTT>TTT	p.L623F	ADNP_uc002xvu.1_Missense_Mutation_p.L623F	NM_015339	NP_056154	Q9H2P0	ADNP_HUMAN	activity-dependent neuroprotector	623	C2H2-type 8; atypical.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						AGAGGACAAAGGGTTTTCCCA	0.443													80	240					0	0	1	0	0
CTCFL	140690	broad.mit.edu	37	20	56094421	56094421	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:56094421G>A	uc010gix.1	-	3	1429	c.767C>T	c.(766-768)ACC>ATC	p.T256I	CTCFL_uc010giw.1_Missense_Mutation_p.T256I|CTCFL_uc002xym.2_Missense_Mutation_p.T256I|CTCFL_uc010giz.1_5'UTR|CTCFL_uc010giy.1_5'UTR|CTCFL_uc010gja.1_Missense_Mutation_p.T256I|CTCFL_uc010gjb.1_Missense_Mutation_p.T256I|CTCFL_uc010gjc.1_Missense_Mutation_p.T256I|CTCFL_uc010gjd.1_Missense_Mutation_p.T256I|CTCFL_uc010gje.2_Missense_Mutation_p.T256I|CTCFL_uc010gjf.2_Missense_Mutation_p.T51I|CTCFL_uc010gjg.2_5'UTR|CTCFL_uc010gjh.1_Missense_Mutation_p.T256I|CTCFL_uc010gji.1_Missense_Mutation_p.T51I|CTCFL_uc010gjj.1_Missense_Mutation_p.T256I|CTCFL_uc010gjk.1_Missense_Mutation_p.T256I|CTCFL_uc010gjl.1_Missense_Mutation_p.T256I	NM_080618	NP_542185	Q8NI51	CTCFL_HUMAN	CCCTC-binding factor-like protein	256					cell cycle|DNA methylation involved in gamete generation|histone methylation|positive regulation of transcription, DNA-dependent|regulation of gene expression by genetic imprinting|regulation of histone H3-K4 methylation|transcription, DNA-dependent	cytoplasm|nucleus	histone binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|skin(1)	4	Lung NSC(12;0.00132)|all_lung(29;0.00433)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;3.95e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.09e-07)			ACAGTGGAAGGTTCCTTTTGC	0.388													43	139					0	0	1	0	0
GNAS	2778	broad.mit.edu	37	20	57415683	57415683	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:57415683C>T	uc002xzt.2	+	1	889	c.522C>T	c.(520-522)TCC>TCT	p.S174S	GNASAS_uc002xzs.1_Intron|GNAS_uc002xzu.3_5'Flank|GNAS_uc010gjq.2_5'Flank	NM_016592	NP_057676	P63092	GNAS2_HUMAN	GNAS complex locus NESP55	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			CCGACGCCTCCCCAAGTCGCG	0.672			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			6	21					0	0	1	0	0
ZNF831	128611	broad.mit.edu	37	20	57767386	57767386	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:57767386G>A	uc002yan.2	+	1	1312	c.1312G>A	c.(1312-1314)GGC>AGC	p.G438S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	438						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GTCCAAACAGGGCAGCATCGA	0.682													10	26					0	0	1	0	0
MIR133A2	406923	broad.mit.edu	37	20	61162139	61162139	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr20:61162139G>A	hsa-mir-133a-2|MI0000451	+			c.21G>A			C20orf166_uc011aaj.1_Intron|C20orf166_uc011aal.1_RNA																	0						TGCTTTGCTAGAGCTGGTAAA	0.592													4	8					0	0	1	0	0
C21orf99	149992	broad.mit.edu	37	21	14414902	14414902	+	RNA	SNP	G	A	A	rs2821609	by1000genomes	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:14414902G>A	uc002yiy.3	+	2		c.339G>A			C21orf99_uc002yja.3_RNA					Homo sapiens C21orf99 protein (C21orf99) mRNA, complete cds.												0						CCAGCTTGACGTCCTTGATGG	0.443													8	41					0	0	1	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19737500	19737500	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:19737500G>A	uc002ykw.2	-	7	761	c.730C>T	c.(730-732)CCA>TCA	p.P244S		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	244	Extracellular (Potential).|CUB 1.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GAAGGTTTTGGATAATGAGTA	0.368													21	85					0	0	1	0	0
GABPA	2551	broad.mit.edu	37	21	27121396	27121396	+	Missense_Mutation	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:27121396C>G	uc002ylx.3	+	4	799	c.272C>G	c.(271-273)ACT>AGT	p.T91S	GABPA_uc002yly.3_Missense_Mutation_p.T91S	NM_002040	NP_002031	Q06546	GABPA_HUMAN	GA binding protein transcription factor, alpha	91					positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	protein heterodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription regulatory region DNA binding			ovary(1)|central_nervous_system(1)	2						ACAGATGGAACTGTACAGCTT	0.303													13	46					0	0	1	0	0
ATP5O	539	broad.mit.edu	37	21	35281407	35281407	+	Missense_Mutation	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:35281407G>T	uc002ytl.2	-	4	398	c.307C>A	c.(307-309)CCC>ACC	p.P103T	DONSON_uc002ysn.1_5'UTR	NM_001697	NP_001688	P48047	ATPO_HUMAN	mitochondrial ATP synthase, O subunit precursor	103					ATP catabolic process|mitochondrial ATP synthesis coupled proton transport|respiratory electron transport chain	mitochondrial proton-transporting ATP synthase complex|plasma membrane|proton-transporting ATP synthase complex, catalytic core F(1)	drug binding|hydrogen ion transporting ATP synthase activity, rotational mechanism			ovary(1)	1						GTAGTGAGGGGAGAGAACCTC	0.333													19	81					8.34094e-07	8.41627e-07	1	1	0
HLCS	3141	broad.mit.edu	37	21	38308998	38308998	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:38308998G>A	uc010gnb.2	-	4	1948	c.747C>T	c.(745-747)TCC>TCT	p.S249S	HLCS_uc002yvs.2_Silent_p.S249S|HLCS_uc010gnc.1_Silent_p.S396S	NM_000411	NP_000402	P50747	BPL1_HUMAN	holocarboxylase synthetase	249					cell proliferation|histone biotinylation|response to biotin	chromatin|cytosol|mitochondrion|nuclear lamina|nuclear matrix	ATP binding|biotin binding|biotin-[acetyl-CoA-carboxylase] ligase activity|biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity|biotin-[methylmalonyl-CoA-carboxytransferase] ligase activity|biotin-[propionyl-CoA-carboxylase (ATP-hydrolyzing)] ligase activity|enzyme binding			ovary(2)|breast(1)|kidney(1)|liver(1)	5		Myeloproliferative disorder(46;0.0422)			Biotin(DB00121)	CAAAGGTGAAGGATGAAGACA	0.522													12	41					0	0	1	0	0
KCNJ6	3763	broad.mit.edu	37	21	39087323	39087323	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:39087323C>T	uc011aej.1	-	3	190	c.137G>A	c.(136-138)CGA>CAA	p.R46Q	KCNJ6_uc002ywo.2_Missense_Mutation_p.R46Q	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	46	Cytoplasmic (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	GGTCCGATCTCGGCTGATGTG	0.547													31	95					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41668001	41668001	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:41668001G>A	uc002yyq.1	-	10	2615	c.2163C>T	c.(2161-2163)ATC>ATT	p.I721I	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	721	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				ATTTCCACACGATGGTAGGTA	0.428													12	59					0	0	1	0	0
ZNF295	49854	broad.mit.edu	37	21	43413584	43413584	+	Silent	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:43413584A>G	uc002zab.3	-	3	835	c.621T>C	c.(619-621)AGT>AGC	p.S207S	ZNF295_uc002yzz.3_Silent_p.S207S|ZNF295_uc002yzy.3_Silent_p.S207S|ZNF295_uc002zaa.3_Silent_p.S207S|ZNF295_uc010gov.1_Silent_p.S207S|ZNF295_uc002zac.2_Silent_p.S207S	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	207					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CTTTCGGCCAACTCTTTTCAG	0.413													38	138					0	0	1	0	0
SIK1	150094	broad.mit.edu	37	21	44840966	44840966	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:44840966G>A	uc002zdf.2	-	7	799	c.672C>T	c.(670-672)TTC>TTT	p.F224F		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	224	Protein kinase.				anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						TAGGCCCATCGAAGGGGAGAG	0.652													5	26					0	0	1	0	0
TRPM2	7226	broad.mit.edu	37	21	45819255	45819255	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:45819255G>A	uc002zet.1	+	15	2352	c.2139G>A	c.(2137-2139)GGG>GGA	p.G713G	TRPM2_uc002zeu.1_Silent_p.G713G|TRPM2_uc002zew.1_Silent_p.G713G|TRPM2_uc010gpt.1_Silent_p.G713G|TRPM2_uc002zex.1_Silent_p.G499G|TRPM2_uc002zey.1_Silent_p.G226G	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	713	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGGCCTGGGGGAAGACCACCT	0.627													12	42					0	0	1	0	0
COL18A1	80781	broad.mit.edu	37	21	46901911	46901911	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:46901911C>T	uc011afs.1	+	13	2912	c.2891C>T	c.(2890-2892)CCA>CTA	p.P964L	COL18A1_uc002zhg.2_Missense_Mutation_p.P549L|COL18A1_uc002zhi.2_Missense_Mutation_p.P729L	NM_130444	NP_569711	P39060	COIA1_HUMAN	alpha 1 type XVIII collagen isoform 3 precursor	964	Triple-helical region 3 (COL3).				cell adhesion|negative regulation of cell proliferation|organ morphogenesis|visual perception	collagen|extracellular space	extracellular matrix structural constituent|metal ion binding|protein binding			central_nervous_system(1)	1				Colorectal(79;0.0157)|READ - Rectum adenocarcinoma(84;0.0929)		GAGGGGCCCCCAGGAAGGACT	0.627													10	30					0	0	1	0	0
PCNT	5116	broad.mit.edu	37	21	47831650	47831650	+	Missense_Mutation	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr21:47831650C>G	uc002zji.3	+	28	5770	c.5663C>G	c.(5662-5664)TCT>TGT	p.S1888C	PCNT_uc002zjj.2_Missense_Mutation_p.S1770C	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1888	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					GCGGCCCACTCTGCCGAGCTG	0.667													11	35					0	0	1	0	0
CCT8L2	150160	broad.mit.edu	37	22	17071989	17071989	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:17071989C>T	uc002zlp.1	-	1	1712	c.1452G>A	c.(1450-1452)GGG>GGA	p.G484G		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	484					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CATTTATTATCCCTTCAGTTC	0.527													42	149					0	0	1	0	0
CECR1	51816	broad.mit.edu	37	22	17690307	17690307	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:17690307G>A	uc002zmk.1	-	1	473	c.261C>T	c.(259-261)TTC>TTT	p.F87F	CECR1_uc010gqu.1_Silent_p.F87F|CECR1_uc011agi.1_Silent_p.F45F|CECR1_uc011agj.1_Silent_p.F45F	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	87	Dimerization.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				GCTTGGCCTGGAAAAAGTGCA	0.502													9	46					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18273570	18273570	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:18273570G>A	uc002zng.3	-	32	6290	c.5937C>T	c.(5935-5937)CTC>CTT	p.L1979L	MICAL3_uc011agl.1_Silent_p.L1895L|MICAL3_uc010grd.1_Silent_p.L95L|MICAL3_uc010gre.1_RNA	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1979	Potential.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CTCTCTCCCGGAGCCGCTGCT	0.582													7	26					0	0	1	0	0
SMARCB1	6598	broad.mit.edu	37	22	24167438	24167438	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:24167438C>T	uc002zyb.2	+	7	1029	c.822C>T	c.(820-822)TCC>TCT	p.S274S	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Silent_p.S265S|SMARCB1_uc002zyd.2_Silent_p.S283S	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	274	2.|2 X approximate tandem repeats.				cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(6)|p.L266_*386del(1)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				GAAACATTTCCCTGGTGGACC	0.572			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				26	81					0	0	1	0	0
GGT5	2687	broad.mit.edu	37	22	24621549	24621549	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:24621549C>T	uc002zzo.3	-	9	1718	c.1301G>A	c.(1300-1302)CGA>CAA	p.R434Q	GGT5_uc002zzp.3_Missense_Mutation_p.R434Q|GGT5_uc002zzr.3_Missense_Mutation_p.R402Q|GGT5_uc002zzq.3_Missense_Mutation_p.R402Q|GGT5_uc011ajm.1_Missense_Mutation_p.R357Q	NM_004121	NP_004112	P36269	GGT5_HUMAN	gamma-glutamyltransferase 5 isoform b	434	Extracellular (Potential).				glutathione biosynthetic process|hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	integral to membrane|plasma membrane	acyltransferase activity|gamma-glutamyltransferase activity			ovary(2)|skin(1)	3						CCGGGGGCATCGCTCGCATAA	0.647													9	38					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26164846	26164846	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:26164846C>T	uc003abz.1	+	4	1213	c.963C>T	c.(961-963)TTC>TTT	p.F321F	MYO18B_uc003aca.1_Silent_p.F202F|MYO18B_uc010guy.1_Silent_p.F202F|MYO18B_uc010guz.1_Silent_p.F202F|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	321						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGGGAGGTTTCCTGGGAAGAA	0.532													4	20					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26219534	26219534	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:26219534G>A	uc003abz.1	+	13	2834	c.2584G>A	c.(2584-2586)GAG>AAG	p.E862K	MYO18B_uc003aca.1_Missense_Mutation_p.E743K|MYO18B_uc010guy.1_Missense_Mutation_p.E743K|MYO18B_uc010guz.1_Missense_Mutation_p.E743K|MYO18B_uc011aka.1_Missense_Mutation_p.E16K|MYO18B_uc011akb.1_Missense_Mutation_p.E375K	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	862	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCTGGGCTGCGAGTATGAGGA	0.582													42	131					0	0	1	0	0
MYO18B	84700	broad.mit.edu	37	22	26228956	26228956	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:26228956C>T	uc003abz.1	+	16	3302	c.3052C>T	c.(3052-3054)CCC>TCC	p.P1018S	MYO18B_uc003aca.1_Missense_Mutation_p.P899S|MYO18B_uc010guy.1_Missense_Mutation_p.P899S|MYO18B_uc010guz.1_Missense_Mutation_p.P899S|MYO18B_uc011aka.1_Missense_Mutation_p.P172S|MYO18B_uc011akb.1_Missense_Mutation_p.P531S	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1018	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GGATCAAAATCCCTCTCAGGT	0.488													9	57					0	0	1	0	0
NEFH	4744	broad.mit.edu	37	22	29879464	29879464	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:29879464G>A	uc003afo.2	+	2	1055	c.984G>A	c.(982-984)AGG>AGA	p.R328R		NM_021076	NP_066554	P12036	NFH_HUMAN	neurofilament, heavy polypeptide 200kDa	328	Coil 2B.|Rod.				cell death|nervous system development	neurofilament					0						TGCAGGCCAGGACCACAGAGC	0.612													36	115					0	0	1	0	0
SEC14L2	23541	broad.mit.edu	37	22	30812280	30812280	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:30812280G>A	uc003ahr.2	+	11	1142	c.969G>A	c.(967-969)AAG>AAA	p.K323K	SEC14L2_uc003ahq.2_Silent_p.K323K|SEC14L2_uc011akx.1_Silent_p.K269K|SEC14L2_uc003ahs.2_Silent_p.K249K|SEC14L2_uc011aky.1_Silent_p.K240K|SEC14L2_uc003aht.2_RNA|SEC14L2_uc003ahu.3_Intron|SEC14L2_uc010gvv.2_Intron|SEC14L2_uc010gvw.1_Intron|MTP18_uc010gvx.1_Silent_p.K16K|MTP18_uc003ahv.1_Silent_p.K147K|MTP18_uc010gvy.1_Intron	NM_012429	NP_036561	O76054	S14L2_HUMAN	SEC14-like 2 isoform 1	323	GOLD.				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	phospholipid binding|transporter activity|vitamin E binding				0					Vitamin E(DB00163)	TGAAGACCAAGATGGGAGAGA	0.537													11	58					0	0	1	0	0
C22orf42	150297	broad.mit.edu	37	22	32550255	32550255	+	Missense_Mutation	SNP	C	T	T	rs143164067		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:32550255C>T	uc003amd.2	-	2	324	c.283G>A	c.(283-285)GGG>AGG	p.G95R		NM_001010859	NP_001010859	Q6IC83	CV042_HUMAN	chromosome 22 open reading frame 42	95										ovary(1)|skin(1)	2						GGCCAAATCCCGTGCCGTCTC	0.368													33	106					0	0	1	0	0
MB	4151	broad.mit.edu	37	22	36003385	36003385	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:36003385C>T	uc003anz.2	-	3	504	c.424G>A	c.(424-426)GAC>AAC	p.D142N	MB_uc003aoa.2_Missense_Mutation_p.D142N|MB_uc003aob.2_Missense_Mutation_p.D142N	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	142							heme binding|oxygen transporter activity				0						GAGGCCATGTCCTTCCGGAAC	0.637													7	39					0	0	1	0	0
DMC1	11144	broad.mit.edu	37	22	38948707	38948707	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:38948707G>A	uc003avz.1	-	7	560	c.385C>T	c.(385-387)CGT>TGT	p.R129C	DMC1_uc011anv.1_Missense_Mutation_p.R129C|DMC1_uc003awa.1_Missense_Mutation_p.R129C	NM_007068	NP_008999	Q14565	DMC1_HUMAN	DMC1 dosage suppressor of mck1 homolog	129	ATP (Potential).				reciprocal meiotic recombination	condensed nuclear chromosome	ATP binding|DNA binding|DNA-dependent ATPase activity|protein binding			ovary(1)	1	Melanoma(58;0.0286)					TTTCCAGTACGAAATTCTGTG	0.274								Homologous_recombination					12	39					0	0	1	0	0
APOBEC3F	200316	broad.mit.edu	37	22	39439055	39439055	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:39439055C>T	uc003aww.2	+	2	424	c.131C>T	c.(130-132)CCC>CTC	p.P44L	APOBEC3F_uc003awv.2_Missense_Mutation_p.P44L|APOBEC3F_uc011aog.1_Missense_Mutation_p.P44L	NM_145298	NP_660341	Q9HC16	ABC3G_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	44					base conversion or substitution editing|DNA cytosine deamination|innate immune response|interspecies interaction between organisms|negative regulation of retroviral genome replication|negative regulation of transposition|positive regulation of defense response to virus by host|response to virus|viral reproduction	apolipoprotein B mRNA editing enzyme complex|cytosol|mitochondrion	cytidine deaminase activity|dCTP deaminase activity|protein homodimerization activity|RNA binding|zinc ion binding				0	Melanoma(58;0.04)					ACAAAGGGTCCCTCAAGGCCC	0.502													19	41					0	0	1	0	0
SLC25A17	10478	broad.mit.edu	37	22	41195056	41195056	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:41195056G>A	uc003azc.2	-	2	226	c.86C>T	c.(85-87)CCC>CTC	p.P29L	SLC25A17_uc010gyg.2_RNA|SLC25A17_uc011aou.1_5'UTR|SLC25A17_uc003azd.2_RNA|SLC25A17_uc011aov.1_Missense_Mutation_p.P29L	NM_006358	NP_006349	O43808	PM34_HUMAN	solute carrier family 25 (mitochondrial carrier;	29	Solcar 1.|Helical; Name=1; (Potential).				fatty acid alpha-oxidation	integral to plasma membrane|mitochondrial inner membrane|peroxisomal membrane	adenine nucleotide transmembrane transporter activity|protein binding				0						TGTATCCAGGGGAAAAAACAC	0.348													17	30					0	0	1	0	0
PHF21B	112885	broad.mit.edu	37	22	45309857	45309857	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:45309857G>A	uc003bfn.2	-	5	827	c.676C>T	c.(676-678)CAT>TAT	p.H226Y	PHF21B_uc003bfm.2_Intron|PHF21B_uc011aqk.1_Intron|PHF21B_uc011aql.1_Intron|PHF21B_uc011aqm.1_Intron	NM_138415	NP_612424	Q96EK2	PF21B_HUMAN	PHD finger protein 21B isoform 1	226							zinc ion binding			ovary(2)|skin(1)	3		all_neural(38;0.00802)|Glioma(61;0.0353)|Ovarian(80;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0203)		AAGATGCCATggaggggtgaa	0.308													18	51					0	0	1	0	0
MAPK11	5600	broad.mit.edu	37	22	50705394	50705394	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:50705394G>A	uc003bkr.2	-	7	637	c.579C>T	c.(577-579)ATC>ATT	p.I193I	MAPK11_uc010hax.2_Silent_p.I15I|MAPK11_uc011ars.1_RNA|MAPK11_uc010hay.1_RNA|MAPK11_uc011art.1_3'UTR|MAPK11_uc010haz.2_Silent_p.I85I	NM_002751	NP_002742	Q15759	MK11_HUMAN	mitogen-activated protein kinase 11	193	Protein kinase.				activation of MAPK activity|innate immune response|mRNA metabolic process|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			lung(1)|breast(1)	2		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AGTTGAGCATGATCTCAGGTG	0.642													9	37					0	0	1	0	0
SAPS2	9701	broad.mit.edu	37	22	50869716	50869716	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:50869716G>A	uc003blb.1	+	12	1662	c.1240G>A	c.(1240-1242)GAG>AAG	p.E414K	SAPS2_uc003bky.1_Missense_Mutation_p.E414K|SAPS2_uc003bkz.1_Missense_Mutation_p.E414K|SAPS2_uc003blc.2_Missense_Mutation_p.E414K|SAPS2_uc003bla.1_Missense_Mutation_p.E415K|SAPS2_uc003bld.1_5'UTR	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	414						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		CAGCGGATCCGAGAGCAGGGT	0.597													21	69					0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10280489	10280489	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:10280489C>T	uc003bve.1	+	12	1607	c.1531C>T	c.(1531-1533)CCT>TCT	p.P511S		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	511					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						GACGTTGCTCCCTTGGAGTGG	0.562													33	115					0	0	1	0	0
RAF1	5894	broad.mit.edu	37	3	12650812	12650812	+	Missense_Mutation	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:12650812T>G	uc003bxf.3	-	4	758	c.343A>C	c.(343-345)AAT>CAT	p.N115H	RAF1_uc011aut.1_5'UTR|RAF1_uc011auu.1_Missense_Mutation_p.N33H	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	115	RBD.				activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity	p.N115S(1)	ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	GCATCAGTATTCCAATCTAAG	0.308			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				32	92					0	0	1	0	0
KAT2B	8850	broad.mit.edu	37	3	20141445	20141445	+	Missense_Mutation	SNP	A	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:20141445A>T	uc003cbq.2	+	4	1114	c.668A>T	c.(667-669)CAG>CTG	p.Q223L		NM_003884	NP_003875	Q92831	KAT2B_HUMAN	K(lysine) acetyltransferase 2B	223					cell cycle arrest|cellular response to insulin stimulus|chromatin remodeling|histone H3 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|negative regulation of cell proliferation|transcription initiation from RNA polymerase I promoter	Ada2/Gcn5/Ada3 transcription activator complex|chromatin remodeling complex|PCAF complex	cyclin-dependent protein kinase inhibitor activity|histone acetyltransferase activity|histone deacetylase binding|protein kinase binding|transcription coactivator activity|transcription factor binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCATTGAACaggtaaaaaga	0.289													10	44					0	0	1	0	0
CMTM7	112616	broad.mit.edu	37	3	32490966	32490966	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:32490966C>T	uc003cey.1	+	3	590	c.354C>T	c.(352-354)ATC>ATT	p.I118I	CMTM7_uc003cez.1_Intron	NM_138410	NP_612419	Q96FZ5	CKLF7_HUMAN	CKLF-like MARVEL transmembrane domain containing	118	Helical; (Potential).|MARVEL.				chemotaxis	extracellular space|integral to membrane	cytokine activity				0						ACTATTTAATCGGTACCCTGC	0.542													26	102					0	0	1	0	0
DCLK3	85443	broad.mit.edu	37	3	36756934	36756934	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:36756934G>A	uc003cgi.2	-	5	2323	c.1832C>T	c.(1831-1833)CCC>CTC	p.P611L		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	611	Protein kinase.					cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						TTCGATCCAGGGGTGCTGAAG	0.552													17	56					0	0	1	0	0
TRANK1	9881	broad.mit.edu	37	3	36897918	36897918	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:36897918C>T	uc003cgj.2	-	3	1815	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1055					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TCAGCTTTTTCCCAGTAAACG	0.517													8	29					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38645360	38645360	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:38645360G>A	uc003cio.2	-	12	1927	c.1733C>T	c.(1732-1734)CCC>CTC	p.P578L	SCN5A_uc003cin.2_Missense_Mutation_p.P578L|SCN5A_uc003cil.3_Missense_Mutation_p.P578L|SCN5A_uc010hhi.2_Missense_Mutation_p.P578L|SCN5A_uc010hhk.2_Missense_Mutation_p.P578L|SCN5A_uc011ayr.1_Missense_Mutation_p.P578L|SCN5A_uc010hhj.1_Missense_Mutation_p.P189L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	578					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CGAGGTTCCGGGACTGGGCTG	0.647													27	102					0	0	1	0	0
CDCP1	64866	broad.mit.edu	37	3	45127319	45127319	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:45127319G>A	uc003com.2	-	9	2457	c.2322C>T	c.(2320-2322)CCC>CCT	p.P774P		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	774	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		TGGGTGGGGAGGGAGGACAGA	0.617													27	86					0	0	1	0	0
NBEAL2	23218	broad.mit.edu	37	3	47039691	47039692	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:47039691_47039692CC>TT	uc003cqp.2	+	21	3272_3273	c.3093_3094CC>TT	c.(3091-3096)ACCCTC>ACTTTC	p.L1032F	NBEAL2_uc010hjm.1_Missense_Mutation_p.L593F	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1032							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		ACCTCTGGACCCTCAGTGACTT	0.614													6	19					0	0	1	0	0
IP6K2	51447	broad.mit.edu	37	3	48730484	48730485	+	Silent	DNP	GG	AA	AA			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:48730484_48730485GG>AA	uc003cup.2	-	3	574_575	c.330_331CC>TT	c.(328-333)CTCCTA>CTTTTA	p.110_111LL>LL	IP6K2_uc003cuq.2_Silent_p.110_111LL>LL	NM_001005909	NP_001005909	Q9UHH9	IP6K2_HUMAN	inositol hexaphosphate kinase 2 isoform a	110_111					negative regulation of cell growth|phosphatidylinositol phosphorylation|positive regulation of apoptosis|type I interferon-mediated signaling pathway	intermediate filament cytoskeleton|nucleus	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol trisphosphate 3-kinase activity				0						GTCCACCTTAGGAGCTTACTTT	0.411													60	199					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64617578	64617578	+	Missense_Mutation	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:64617578T>G	uc003dmg.2	-	15	2231	c.2199A>C	c.(2197-2199)TTA>TTC	p.L733F	ADAMTS9_uc011bfo.1_Missense_Mutation_p.L705F|ADAMTS9_uc003dmh.1_Missense_Mutation_p.L562F|ADAMTS9_uc003dmk.1_Missense_Mutation_p.L733F	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	733	Cys-rich.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CTTTTGAGTTTAAAACATGAT	0.323													24	51					0	0	1	0	0
OR5K4	403278	broad.mit.edu	37	3	98073443	98073443	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:98073443C>T	uc011bgv.1	+	1	746	c.746C>T	c.(745-747)TCA>TTA	p.S249L		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CTCTCTGTCTCAATATTTTAC	0.358													23	79					0	0	1	0	0
IMPG2	50939	broad.mit.edu	37	3	100963506	100963506	+	Missense_Mutation	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:100963506A>C	uc003duq.1	-	13	1872	c.1669T>G	c.(1669-1671)TCT>GCT	p.S557A	IMPG2_uc011bhe.1_Missense_Mutation_p.S420A	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	557	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TATGGTGAAGATGTTAAGGAC	0.408													40	122					0	0	1	0	0
HHLA2	11148	broad.mit.edu	37	3	108072559	108072559	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:108072559G>A	uc003dwy.3	+	4	517	c.350G>A	c.(349-351)GGA>GAA	p.G117E	HHLA2_uc011bhl.1_Missense_Mutation_p.G53E|HHLA2_uc010hpu.2_Missense_Mutation_p.G117E|HHLA2_uc003dwz.2_Missense_Mutation_p.G117E	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	117	Ig-like V-type 1.					integral to membrane				ovary(1)	1						CTGGACGAAGGAATTTACACC	0.403													13	40					0	0	1	0	0
GUCA1C	9626	broad.mit.edu	37	3	108627001	108627001	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:108627001C>T	uc003dxj.2	-	4	566	c.498G>A	c.(496-498)CTG>CTA	p.L166L	GUCA1C_uc003dxk.2_Missense_Mutation_p.G180R	NM_005459	NP_005450	O95843	GUC1C_HUMAN	guanylate cyclase activator 1C	166					signal transduction|visual perception		calcium ion binding|calcium sensitive guanylate cyclase activator activity				0						AAACAATCTCCAGGAGATCCT	0.408													15	58					0	0	1	0	0
DPPA2	151871	broad.mit.edu	37	3	109031471	109031471	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:109031471G>A	uc003dxo.2	-	3	349	c.102C>T	c.(100-102)GAC>GAT	p.D34D		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	34						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						CCATATTTGCGTCATCTTTAA	0.413													39	137					0	0	1	0	0
SIDT1	54847	broad.mit.edu	37	3	113320486	113320486	+	Missense_Mutation	SNP	G	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:113320486G>T	uc003eak.2	+	11	1748	c.1097G>T	c.(1096-1098)GGG>GTG	p.G366V	SIDT1_uc011bif.1_RNA|SIDT1_uc003eaj.1_Missense_Mutation_p.G366V|SIDT1_uc011big.1_Missense_Mutation_p.G119V|SIDT1_uc011bih.1_5'Flank	NM_017699	NP_060169	Q9NXL6	SIDT1_HUMAN	SID1 transmembrane family, member 1 precursor	366	Cytoplasmic (Potential).					integral to membrane				ovary(3)|pancreas(1)|skin(1)	5						ACACCCGAAGGGAGCAATTAT	0.408													15	43					1.3612e-06	1.37173e-06	1	1	0
ZNF80	7634	broad.mit.edu	37	3	113955735	113955735	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:113955735G>A	uc010hqo.2	-	1	691	c.187C>T	c.(187-189)CTC>TTC	p.L63F	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	63	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				CGAACAAGGAGGCTGTTTTTG	0.483													15	61					0	0	1	0	0
C3orf15	89876	broad.mit.edu	37	3	119445028	119445028	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:119445028C>T	uc003ede.3	+	7	770	c.693C>T	c.(691-693)CTC>CTT	p.L231L	C3orf15_uc010hqy.1_Silent_p.L231L|C3orf15_uc010hqz.2_Silent_p.L169L|C3orf15_uc011bjd.1_Silent_p.L105L|C3orf15_uc011bje.1_Silent_p.L211L|C3orf15_uc010hra.1_5'UTR	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	231						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GTCGGGGTCTCCCAGCAGGAC	0.547													5	21					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	120977920	120977920	+	Silent	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:120977920A>G	uc003eec.3	+	18	2003	c.1863A>G	c.(1861-1863)CCA>CCG	p.P621P	STXBP5L_uc011bji.1_Silent_p.P621P	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	621	WD 9.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GAATGCCTCCAGGATATCAAG	0.378													10	45					0	0	1	0	0
STXBP5L	9515	broad.mit.edu	37	3	121137202	121137202	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:121137202G>A	uc003eec.3	+	27	3457	c.3317G>A	c.(3316-3318)GGA>GAA	p.G1106E	STXBP5L_uc011bji.1_Missense_Mutation_p.G1082E	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	1106					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		GCTTCGGCAGGAAAAGCATCC	0.473													5	36					0	0	1	0	0
POLQ	10721	broad.mit.edu	37	3	121215771	121215771	+	Missense_Mutation	SNP	G	A	A	rs142688084	byFrequency	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:121215771G>A	uc003eee.3	-	14	2291	c.2162C>T	c.(2161-2163)ACC>ATC	p.T721I		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	721					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CACAAGACTGGTGAAAAACCT	0.388								DNA_polymerases_(catalytic_subunits)					11	57					0	0	1	0	0
HCLS1	3059	broad.mit.edu	37	3	121351010	121351010	+	Missense_Mutation	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:121351010C>A	uc003eeh.3	-	13	1387	c.1262G>T	c.(1261-1263)GGG>GTG	p.G421V	HCLS1_uc011bjj.1_Missense_Mutation_p.G384V	NM_005335	NP_005326	P14317	HCLS1_HUMAN	hematopoietic cell-specific Lyn substrate 1	421					erythrocyte differentiation|intracellular signal transduction|positive regulation of cell proliferation|positive regulation of tyrosine phosphorylation of STAT protein|response to hormone stimulus	mitochondrion|nucleus|plasma membrane	DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(114;0.0912)		agccccagccccagccGGGCA	0.433													20	65					2.89027e-11	2.94295e-11	1	1	0
CASR	846	broad.mit.edu	37	3	121980708	121980708	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:121980708C>T	uc003eev.3	+	4	1198	c.826C>T	c.(826-828)CTT>TTT	p.L276F	CASR_uc003eew.3_Missense_Mutation_p.L276F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	276	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TGGCCCAGATCTTGAGCCCCT	0.557													45	113					0	0	1	0	0
Unknown	0	broad.mit.edu	37	3	126916098	126916098	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:126916098G>A	uc003eji.1	+	2	810	c.570G>A	c.(568-570)TGG>TGA	p.W190*						RecName: Full=Putative uncharacterized protein C3orf56;																		CCTCAGAATGGGCCTCCAGGT	0.622													13	29					0	0	1	0	0
CPNE4	131034	broad.mit.edu	37	3	131261452	131261452	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:131261452C>T	uc003eok.2	-	15	1923	c.1488G>A	c.(1486-1488)GAG>GAA	p.E496E	CPNE4_uc011blq.1_Silent_p.E514E|CPNE4_uc003eol.2_Silent_p.E514E|CPNE4_uc003eom.2_Silent_p.E496E|CPNE4_uc003eoj.2_Silent_p.E47E	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	496	VWFA.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GAAGAACAGGCTCTCCCTTGG	0.507													26	82					0	0	1	0	0
DNAJC13	23317	broad.mit.edu	37	3	132241685	132241685	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:132241685T>C	uc003eor.2	+	49	5752	c.5687T>C	c.(5686-5688)TTA>TCA	p.L1896S		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1896							heat shock protein binding			ovary(1)|breast(1)	2						CGAATTACGTTAATGAAATTT	0.328													8	35					0	0	1	0	0
PPP2R3A	5523	broad.mit.edu	37	3	135745729	135745729	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:135745729C>T	uc003eqv.1	+	3	2616	c.2051C>T	c.(2050-2052)TCT>TTT	p.S684F	PPP2R3A_uc011blz.1_5'UTR|PPP2R3A_uc003eqw.1_Missense_Mutation_p.S63F|PPP2R3A_uc011bma.1_RNA	NM_002718	NP_002709	Q06190	P2R3A_HUMAN	protein phosphatase 2, regulatory subunit B'',	684	Pro-rich.				protein dephosphorylation	protein phosphatase type 2A complex	calcium ion binding|protein binding|protein phosphatase type 2A regulator activity			ovary(3)|pancreas(1)|lung(1)|breast(1)|skin(1)	7						CCAGCCACCTCTCCAAGTAGT	0.418													24	82					0	0	1	0	0
IL20RB	53833	broad.mit.edu	37	3	136714338	136714338	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:136714338G>A	uc003eri.1	+	6	1014	c.765G>A	c.(763-765)TGG>TGA	p.W255*	IL20RB_uc003erj.1_RNA|IL20RB_uc010hud.1_Nonsense_Mutation_p.W113*	NM_144717	NP_653318	Q6UXL0	I20RB_HUMAN	interleukin 20 receptor beta precursor	255	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)	1						TGTTCGTCTGGAAAATGGGCC	0.502													65	234					0	0	1	0	0
PRR23B	389151	broad.mit.edu	37	3	138738986	138738986	+	Missense_Mutation	SNP	C	T	T	rs141791557	byFrequency	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:138738986C>T	uc003esy.1	-	1	783	c.518G>A	c.(517-519)GGC>GAC	p.G173D		NM_001013650	NP_001013672	Q6ZRT6	PR23B_HUMAN	proline rich 23B	173										breast(1)	1						AGCGGCTGAGCCGGTTGGGGA	0.647													18	37					0	0	1	0	0
CPA3	1359	broad.mit.edu	37	3	148600313	148600313	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:148600313C>T	uc003ewm.2	+	8	761	c.709C>T	c.(709-711)CGT>TGT	p.R237C		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	237					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			GAGAAAAAATCGTTCCAAGAA	0.383													14	47					0	0	1	0	0
WWTR1	25937	broad.mit.edu	37	3	149374934	149374934	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:149374934T>C	uc003exe.2	-	1	176	c.160A>G	c.(160-162)AAG>GAG	p.K54E	WWTR1_uc003exf.2_Missense_Mutation_p.K54E|WWTR1_uc011bns.1_Missense_Mutation_p.K54E|WWTR1_uc003exh.2_Missense_Mutation_p.K54E|uc010hvg.1_RNA|uc003exi.1_5'Flank	NM_015472	NP_056287	Q9GZV5	WWTR1_HUMAN	WW domain containing transcription regulator 1	54					hippo signaling cascade|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of protein kinase activity|negative regulation of protein phosphorylation|positive regulation of cell proliferation|positive regulation of epithelial to mesenchymal transition|regulation of SMAD protein import into nucleus|stem cell division|transcription, DNA-dependent	cytoplasm	transcription coactivator activity			breast(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			TCAGGCTCCTTAAAGAAAGAC	0.632													4	9					0	0	1	0	0
P2RY12	64805	broad.mit.edu	37	3	151055902	151055902	+	Silent	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:151055902T>A	uc003eyw.1	-	2	948	c.732A>T	c.(730-732)GTA>GTT	p.V244V	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY12_uc011boa.1_3'UTR|P2RY12_uc003eyx.1_Silent_p.V244V	NM_176876	NP_795345	Q9H244	P2Y12_HUMAN	purinergic receptor P2Y12	244	Helical; Name=6; (Potential).				platelet activation	integral to membrane|plasma membrane	guanyl-nucleotide exchange factor activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)		Clopidogrel(DB00758)|Epoprostenol(DB01240)|Ticlopidine(DB00208)|Treprostinil(DB00374)	AAATAAAGAATACAGCAATGA	0.413													31	56					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155200375	155200375	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:155200375T>C	uc011bok.1	-	23	3741	c.3464A>G	c.(3463-3465)GAC>GGC	p.D1155G	PLCH1_uc011boj.1_3'UTR|PLCH1_uc011bol.1_Missense_Mutation_p.D1117G	NM_001130960	NP_001124432	Q4KWH8	PLCH1_HUMAN	phospholipase C eta 1 isoform a	1155					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(3)|ovary(1)	4			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			CATGGAGACGTCTGACAAAGA	0.423													25	65					0	0	1	0	0
SERPINI2	5276	broad.mit.edu	37	3	167170817	167170817	+	Nonsense_Mutation	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:167170817T>A	uc003fer.1	-	5	929	c.871A>T	c.(871-873)AAA>TAA	p.K291*	SERPINI2_uc003fes.1_Nonsense_Mutation_p.K301*|SERPINI2_uc003fet.1_Nonsense_Mutation_p.K291*	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	291					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						TGTTCTACTTTAAATCTGTTA	0.299													6	25					0	0	1	0	0
SAMD7	344658	broad.mit.edu	37	3	169654229	169654229	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:169654229C>T	uc003fgd.2	+	8	1411	c.1144C>T	c.(1144-1146)CAG>TAG	p.Q382*	SAMD7_uc003fge.2_Nonsense_Mutation_p.Q382*|SAMD7_uc011bpo.1_Nonsense_Mutation_p.Q283*	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	382	SAM.									skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			ACTAAAAATTCAGTCACAGGT	0.318													15	54					0	0	1	0	0
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:178936091G>A	uc003fjk.2	+	10	1790	c.1633G>A	c.(1633-1635)GAG>AAG	p.E545K		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	545	PI3K helical.		E -> G (in KERSEB).|E -> A (in cancer).|E -> K (in KERSEB; shows an increase in lipid kinase activity; oncogenic in vivo; occurs in the interface between the PI3K helical domain and the nSH2 (N-terminal SH2) region of the p85 regulatory subunit and may reduce the inhibitory effect of p85; requires interaction with RAS to induce cellular transformation; enhances invadopodia-mediated extracellular matrix degradation and invasion in breast cancer cells).		epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity	p.E545K(735)|p.E545A(75)|p.E545G(55)|p.E545?(19)|p.E545D(15)|p.E545Q(12)|p.E545V(4)		breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TGAAATCACTGAGCAGGAGAA	0.353	E545K(RERFLCSQ1_LUNG)|E545K(KYSE510_OESOPHAGUS)|E545K(NCIH508_LARGE_INTESTINE)|E545K(HCC202_BREAST)|E545K(BFTC909_KIDNEY)|E545K(HCT15_LARGE_INTESTINE)|E545K(NCIH596_LUNG)|E545K(L363_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|E545K(DLD1_LARGE_INTESTINE)|E545K(ESS1_ENDOMETRIUM)|E545K(MDAMB361_BREAST)|E545K(MKN1_STOMACH)|E545K(MCF7_BREAST)|E545K(NCIH460_LUNG)|E545K(TCCSUP_URINARY_TRACT)|E545K(HSC4_UPPER_AERODIGESTIVE_TRACT)|E545K(BC3C_URINARY_TRACT)|E545K(HUH28_BILIARY_TRACT)|E545K(HT1197_URINARY_TRACT)|E545K(TE5_OESOPHAGUS)	57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			16	51					0	0	1	0	0
EHHADH	1962	broad.mit.edu	37	3	184910033	184910033	+	Missense_Mutation	SNP	G	A	A	rs140662313		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:184910033G>A	uc003fpf.2	-	7	2180	c.2153C>T	c.(2152-2154)TCC>TTC	p.S718F	EHHADH_uc011brs.1_Missense_Mutation_p.S622F	NM_001966	NP_001957	Q08426	ECHP_HUMAN	enoyl-Coenzyme A, hydratase/3-hydroxyacyl	718						peroxisome	3-hydroxyacyl-CoA dehydrogenase activity|coenzyme binding|dodecenoyl-CoA delta-isomerase activity|enoyl-CoA hydratase activity			ovary(3)	3	all_cancers(143;4.04e-11)|Ovarian(172;0.0339)|Breast(254;0.247)		Epithelial(37;1.98e-32)|OV - Ovarian serous cystadenocarcinoma(80;5.55e-21)		NADH(DB00157)	ACTGCTAGGGGAGCCTGCCAA	0.433													29	72					0	0	1	0	0
LEPREL1	55214	broad.mit.edu	37	3	189705417	189705417	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:189705417G>A	uc011bsk.1	-	5	1385	c.997C>T	c.(997-999)CTT>TTT	p.L333F	LEPREL1_uc003fsg.2_Missense_Mutation_p.L152F	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	333	TPR 4.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGGCATAGAAGATAGGCTTTG	0.463													19	77					0	0	1	0	0
KIAA0226	9711	broad.mit.edu	37	3	197402345	197402345	+	Missense_Mutation	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr3:197402345A>C	uc003fyc.2	-	19	2871	c.2688T>G	c.(2686-2688)AAT>AAG	p.N896K	KIAA0226_uc003fyd.3_Missense_Mutation_p.N851K|MIR922_hsa-mir-922|MI0005714_5'Flank	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	896	Cys-rich.				autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		TGTCATCCTCATTCTGACAGA	0.547													60	201					0	0	1	0	0
C4orf50	389197	broad.mit.edu	37	4	5969157	5969157	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:5969157C>T	uc003git.1	-	5	531	c.441G>A	c.(439-441)ATG>ATA	p.M147I		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	147										pancreas(2)|breast(1)	3						AAGCTGCCGTCATCTCAGACT	0.527													28	78					0	0	1	0	0
ABLIM2	84448	broad.mit.edu	37	4	8009831	8009831	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:8009831C>T	uc003gko.2	-	15	1614	c.1471G>A	c.(1471-1473)GAC>AAC	p.D491N	ABLIM2_uc003gkk.2_Missense_Mutation_p.D155N|ABLIM2_uc003gkl.2_Missense_Mutation_p.D219N|ABLIM2_uc003gkj.3_Missense_Mutation_p.D525N|ABLIM2_uc003gkm.3_Missense_Mutation_p.D439N|ABLIM2_uc003gkp.2_Missense_Mutation_p.D450N|ABLIM2_uc003gkq.2_Missense_Mutation_p.D491N|ABLIM2_uc003gkr.2_Missense_Mutation_p.D440N|ABLIM2_uc003gks.3_Missense_Mutation_p.D451N|MIR95_hsa-mir-95|MI0000097_5'Flank	NM_001130084	NP_001123556	Q6H8Q1	ABLM2_HUMAN	actin binding LIM protein family, member 2	491					axon guidance|cytoskeleton organization	actin cytoskeleton|cytoplasm|intermediate filament cytoskeleton|nucleus	actin binding|zinc ion binding			pancreas(3)	3						GGGTCTCTGTCGGTCCCGCTG	0.562													35	112					0	0	1	0	0
SLC2A9	56606	broad.mit.edu	37	4	9943610	9943610	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:9943610C>T	uc003gmc.2	-	6	802	c.741G>A	c.(739-741)CTG>CTA	p.L247L	SLC2A9_uc003gmd.2_Silent_p.L218L	NM_020041	NP_064425	Q9NRM0	GTR9_HUMAN	solute carrier family 2, member 9 protein	247	Helical; Name=6; (Potential).				glucose transport|urate metabolic process	integral to membrane|plasma membrane	sugar:hydrogen symporter activity			ovary(3)	3						AGGGAAGGCTCAGCAGCTGGA	0.582													12	27					0	0	1	0	0
YIPF7	285525	broad.mit.edu	37	4	44624459	44624460	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:44624459_44624460CC>TT	uc010ifx.1	-	6	831_832	c.814_815GG>AA	c.(814-816)GGA>AAA	p.G272K		NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	272	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0						GGCAAAAAGTCCATAAAGTATG	0.401													5	39					0	0	1	0	0
GABRA4	2557	broad.mit.edu	37	4	46973157	46973157	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:46973157G>A	uc003gxg.2	-	7	956	c.817C>T	c.(817-819)CTT>TTT	p.L273F		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	273	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ACTTGAGAAAGAATCACTGTC	0.363													13	44					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55953799	55953799	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:55953799G>A	uc003has.2	-	27	3939	c.3637C>T	c.(3637-3639)CAT>TAT	p.H1213Y	KDR_uc003hat.1_Missense_Mutation_p.H1213Y	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1213	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTGTCATAATGGAATTTGGGG	0.507			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			12	51					0	0	1	0	0
KDR	3791	broad.mit.edu	37	4	55972865	55972865	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:55972865C>T	uc003has.2	-	11	1827	c.1525G>A	c.(1525-1527)GGA>AGA	p.G509R	KDR_uc003hat.1_Missense_Mutation_p.G509R|KDR_uc011bzx.1_Missense_Mutation_p.G509R	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	509	Ig-like C2-type 5.|Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	TTGTTTTTTCCTTCAATTAGA	0.323			Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			10	31					0	0	1	0	0
CEP135	9662	broad.mit.edu	37	4	56890672	56890672	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:56890672G>A	uc003hbi.2	+	25	3560	c.3326G>A	c.(3325-3327)CGA>CAA	p.R1109Q	CEP135_uc003hbj.2_Missense_Mutation_p.R815Q	NM_025009	NP_079285	Q66GS9	CP135_HUMAN	centrosome protein 4	1109	Potential.				centriole replication|centriole-centriole cohesion|G2/M transition of mitotic cell cycle	centriole|cytosol	protein C-terminus binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	Glioma(25;0.08)|all_neural(26;0.101)					AACAGAGAACGAGCAATCCAA	0.378													57	199					0	0	1	0	0
LPHN3	23284	broad.mit.edu	37	4	62598778	62598778	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:62598778G>A	uc010ihh.2	+	5	874	c.701G>A	c.(700-702)CGG>CAG	p.R234Q	LPHN3_uc003hcq.3_Missense_Mutation_p.R234Q|LPHN3_uc010ihg.1_Missense_Mutation_p.R302Q|LPHN3_uc003hcs.1_Missense_Mutation_p.R63Q	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	234	Extracellular (Potential).|Olfactomedin-like.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TTTGATTTGCGGACTAGGATA	0.463													7	33					0	0	1	0	0
UGT2B11	10720	broad.mit.edu	37	4	70079978	70079978	+	Missense_Mutation	SNP	G	A	A	rs142415589	byFrequency	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:70079978G>A	uc003heh.2	-	1	472	c.463C>T	c.(463-465)CCC>TCC	p.P155S	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	155					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TCACCACAGGGAAAAACAGCA	0.398													25	106					0	0	1	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361387	70361387	+	Missense_Mutation	SNP	C	T	T	rs140509960		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:70361387C>T	uc003hek.3	-	1	240	c.193G>A	c.(193-195)GAT>AAT	p.D65N	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.D65N	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	65					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity	p.D65N(1)		skin(2)	2						CTGTTGGGATCGAAAGAAATG	0.398													40	107					0	0	1	0	0
STATH	6779	broad.mit.edu	37	4	70864163	70864163	+	Silent	SNP	C	T	T	rs144461948		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:70864163C>T	uc003heu.1	+	2	119	c.9C>T	c.(7-9)TTC>TTT	p.F3F	STATH_uc003hev.1_Silent_p.F3F	NM_003154	NP_003145	P02808	STAT_HUMAN	statherin isoform a	3					biomineral tissue development|negative regulation of bone mineralization|ossification|saliva secretion	extracellular region	extracellular matrix constituent, lubricant activity|hydroxyapatite binding|protein binding|structural constituent of tooth enamel	p.F3F(1)		skin(1)	1						CTATGAAGTTCCTTGTCTTTG	0.378													23	60					0	0	1	0	0
PROL1	58503	broad.mit.edu	37	4	71275418	71275418	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:71275418C>T	uc003hfi.2	+	3	547	c.373C>T	c.(373-375)CCT>TCT	p.P125S		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	125	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				ACCCCCATTTCCTCCTATTCC	0.413													36	112					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79366792	79366792	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:79366792C>T	uc003hlb.2	+	42	6222	c.5782C>T	c.(5782-5784)CAT>TAT	p.H1928Y	FRAS1_uc003hkw.2_Missense_Mutation_p.H1928Y|FRAS1_uc010ijj.1_Missense_Mutation_p.H348Y	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1927	CSPG 7.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TGAGCCAACCCATGATATTTT	0.388													41	188					0	0	1	0	0
ADH1A	124	broad.mit.edu	37	4	100208729	100208729	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:100208729G>A	uc003hur.1	-	2	183	c.112C>T	c.(112-114)CGT>TGT	p.R38C	uc003hum.1_Intron|ADH1A_uc011ceg.1_Missense_Mutation_p.R38C|ADH1A_uc010ilf.1_5'Flank|ADH1A_uc010ilg.1_Missense_Mutation_p.R38C	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	38					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	ACCTTAATACGAACTTCATGG	0.348													9	50					0	0	1	0	0
SEC24B	10427	broad.mit.edu	37	4	110442725	110442725	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:110442725C>T	uc003hzk.2	+	14	2506	c.2451C>T	c.(2449-2451)TCC>TCT	p.S817S	SEC24B_uc003hzl.2_Silent_p.S782S|SEC24B_uc011cfp.1_Silent_p.S847S|SEC24B_uc011cfq.1_Silent_p.S816S|SEC24B_uc011cfr.1_Silent_p.S781S	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	817					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		AGTTACCTTCCTTGGGTGCAG	0.413													15	41					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114117542	114117542	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:114117542C>T	uc003ibe.3	+	3	305	c.205C>T	c.(205-207)CAT>TAT	p.H69Y	ANK2_uc003ibd.3_Missense_Mutation_p.H48Y|ANK2_uc003ibf.3_Missense_Mutation_p.H69Y|ANK2_uc003ibc.2_Missense_Mutation_p.H45Y|ANK2_uc011cgb.1_Missense_Mutation_p.H84Y	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	69	ANK 2.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CAACGCTCTCCATCTGGCTGC	0.483													8	30					0	0	1	0	0
ANK2	287	broad.mit.edu	37	4	114286226	114286226	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:114286226C>T	uc003ibe.3	+	41	11020	c.10920C>T	c.(10918-10920)ATC>ATT	p.I3640I	ANK2_uc003ibd.3_Silent_p.I1546I|ANK2_uc003ibf.3_Silent_p.I1555I|ANK2_uc011cgc.1_Silent_p.I731I|ANK2_uc003ibg.3_Silent_p.I539I|ANK2_uc003ibh.3_Silent_p.I229I|ANK2_uc011cgd.1_Silent_p.I942I	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3607	Death.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		TCACCAAGATCAACCGAATGG	0.408													32	130					0	0	1	0	0
SEC24D	9871	broad.mit.edu	37	4	119736678	119736678	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:119736678G>A	uc003ici.3	-	5	873	c.601C>T	c.(601-603)CCT>TCT	p.P201S	SEC24D_uc003icj.3_Missense_Mutation_p.P201S|SEC24D_uc003icl.2_RNA|SEC24D_uc010imz.1_RNA|SEC24D_uc011cgg.1_RNA	NM_014822	NP_055637	O94855	SC24D_HUMAN	Sec24-related protein D	201	Pro-rich.				COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	zinc ion binding				0						GCATTTGGAGGAGGAGGCCCA	0.597													19	61					0	0	1	0	0
TBC1D9	23158	broad.mit.edu	37	4	141544026	141544026	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:141544026C>T	uc010ioj.2	-	21	3396	c.3124G>A	c.(3124-3126)GAA>AAA	p.E1042K		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1042						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				TTGGGGTCTTCGCTGAACATG	0.527													4	8					0	0	1	0	0
FBXW7	55294	broad.mit.edu	37	4	153332598	153332598	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:153332598G>A	uc003ims.2	-	2	507	c.358C>T	c.(358-360)CAG>TAG	p.Q120*	FBXW7_uc011cii.1_Nonsense_Mutation_p.Q120*|FBXW7_uc003imt.2_Nonsense_Mutation_p.Q120*|FBXW7_uc003imu.2_Nonsense_Mutation_p.Q120*	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	120					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				TCACTCTCCTGGTCCATctcc	0.388			Mis|N|D|F		colorectal|endometrial|T-ALL								13	57					0	0	1	0	0
SFRP2	6423	broad.mit.edu	37	4	154702753	154702753	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:154702753G>A	uc003inv.1	-	3	979	c.738C>T	c.(736-738)ACC>ACT	p.T246T		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	246	NTR.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				TCTCCTCACAGGTGCACTGCA	0.557													19	74					0	0	1	0	0
GLRB	2743	broad.mit.edu	37	4	158065068	158065068	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:158065068C>T	uc003ipj.2	+	8	1063	c.861C>T	c.(859-861)TCC>TCT	p.S287S		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	287	Helical; (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	CCTGGCTTTCCTTCTGGATCA	0.507													26	51					0	0	1	0	0
LOC285501	285501	broad.mit.edu	37	4	178897055	178897055	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:178897055G>A	uc010iru.2	+	5		c.724G>A				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		AGAGCCTACAGAATGTGTCTG	0.398													32	110					0	0	1	0	0
RWDD4A	201965	broad.mit.edu	37	4	184562617	184562617	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:184562617C>T	uc003ivt.1	-	7	765	c.539G>A	c.(538-540)AGC>AAC	p.S180N		NM_152682	NP_689895	Q6NW29	RWDD4_HUMAN	RWD domain containing 4A	180											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;7.35e-27)|Epithelial(43;1.49e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.76e-10)|GBM - Glioblastoma multiforme(59;5.54e-06)|Colorectal(24;7.92e-06)|STAD - Stomach adenocarcinoma(60;2.35e-05)|COAD - Colon adenocarcinoma(29;6.26e-05)|LUSC - Lung squamous cell carcinoma(40;0.00935)|READ - Rectum adenocarcinoma(43;0.166)		GCCAGTTTTGCTTAACTATAA	0.328													25	105					0	0	1	0	0
STOX2	56977	broad.mit.edu	37	4	184931511	184931511	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:184931511G>A	uc003ivz.1	+	3	2955	c.1520G>A	c.(1519-1521)GGG>GAG	p.G507E	STOX2_uc003iwa.1_Missense_Mutation_p.G196E	NM_020225	NP_064610	Q9P2F5	STOX2_HUMAN	storkhead box 2	507					embryo development|maternal placenta development						0		all_lung(41;1.89e-12)|Lung NSC(41;3.48e-12)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|all_hematologic(60;0.027)|Prostate(90;0.0283)		all cancers(43;2.85e-26)|Epithelial(43;2.27e-22)|OV - Ovarian serous cystadenocarcinoma(60;3.4e-10)|Colorectal(24;8.23e-06)|GBM - Glioblastoma multiforme(59;1.64e-05)|STAD - Stomach adenocarcinoma(60;3.6e-05)|COAD - Colon adenocarcinoma(29;4.37e-05)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.227)		TCTTCTCTAGGGACGCCGGAA	0.547													4	15					0	0	1	0	0
KLKB1	3818	broad.mit.edu	37	4	187172926	187172926	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:187172926C>T	uc003iyy.2	+	10	1126	c.1055C>T	c.(1054-1056)TCT>TTT	p.S352F	KLKB1_uc011clc.1_Missense_Mutation_p.S150F|KLKB1_uc011cld.1_Missense_Mutation_p.S314F	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	352	Apple 4.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		TTAAGATTATCTATGGATGGT	0.418													32	116					0	0	1	0	0
FAT1	2195	broad.mit.edu	37	4	187510253	187510253	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr4:187510253G>A	uc003izf.2	-	27	13448	c.13260C>T	c.(13258-13260)ATC>ATT	p.I4420I	FAT1_uc010isn.2_Silent_p.I67I|FAT1_uc003ize.2_Silent_p.I311I	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4420	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AGTCCGTATCGATGGCGTTTG	0.537										HNSCC(5;0.00058)			60	244					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13737583	13737583	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:13737583G>A	uc003jfd.2	-	66	11275	c.11233C>T	c.(11233-11235)CAT>TAT	p.H3745Y	DNAH5_uc003jfc.2_Intron	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3745	Potential.|AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCCATCAGATGAGTTCTTTCT	0.373									Kartagener_syndrome				14	44					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13829767	13829767	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:13829767A>G	uc003jfd.2	-	38	6338	c.6296T>C	c.(6295-6297)ATT>ACT	p.I2099T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2099	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GCGGAAATTAATCTTCAAGTT	0.463									Kartagener_syndrome				13	87					0	0	1	0	0
CDH6	1004	broad.mit.edu	37	5	31323187	31323187	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:31323187C>T	uc003jhe.1	+	12	2471	c.2145C>T	c.(2143-2145)TTC>TTT	p.F715F		NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	715	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TCAGAGATTTCATTAACCAAA	0.532													14	49					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	33162658	33162658	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:33162658G>A	uc003jhx.2	+	1		c.393G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TGGGCCGCAAGAAGGGAGCCA	0.458													9	18					0	0	1	0	0
Unknown	0	broad.mit.edu	37	5	33162708	33162708	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:33162708G>A	uc003jhx.2	+	1		c.443G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		AACAAAAAACGATTTAAACAA	0.468													3	8					0	0	1	0	0
SPEF2	79925	broad.mit.edu	37	5	35727852	35727852	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:35727852C>T	uc003jjo.2	+	21	3101	c.2990C>T	c.(2989-2991)CCT>CTT	p.P997L	SPEF2_uc003jjp.1_Missense_Mutation_p.P483L	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	997					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GATACATCACCTGTTGCAATA	0.418													25	92					0	0	1	0	0
NNT	23530	broad.mit.edu	37	5	43613102	43613102	+	Silent	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:43613102T>C	uc003joe.2	+	3	499	c.244T>C	c.(244-246)TTG>CTG	p.L82L	NNT_uc003jof.2_Silent_p.L82L	NM_012343	NP_036475	Q13423	NNTM_HUMAN	nicotinamide nucleotide transhydrogenase	82	Mitochondrial matrix.				tricarboxylic acid cycle	integral to membrane|mitochondrial respiratory chain	NAD binding|NAD(P)+ transhydrogenase (AB-specific) activity|NAD(P)+ transhydrogenase (B-specific) activity|NADP binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(6;2.58e-06)				NADH(DB00157)	TGTTCAGAACTTGGTCAAGCA	0.473													50	156					0	0	1	0	0
DHX29	54505	broad.mit.edu	37	5	54577307	54577307	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:54577307G>A	uc003jpx.2	-	12	2122	c.2002C>T	c.(2002-2004)CGA>TGA	p.R668*	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	668	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				TCACAAGCTCGAGATTCCATC	0.378													20	95					0	0	1	0	0
FAM151B	167555	broad.mit.edu	37	5	79837533	79837533	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:79837533C>T	uc003kgv.1	+	6	856	c.713C>T	c.(712-714)TCC>TTC	p.S238F	FAM151B_uc010jal.1_RNA	NM_205548	NP_991111	Q6UXP7	F151B_HUMAN	hypothetical protein LOC167555	238											0		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;8.21e-47)|Epithelial(54;8.3e-42)|all cancers(79;1.97e-36)		GATAACTATTCCGTTGAAGAT	0.328													5	28					0	0	1	0	0
ATP6AP1L	92270	broad.mit.edu	37	5	81608652	81608652	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:81608652C>T	uc003khv.2	+	9	1679	c.354C>T	c.(352-354)GTC>GTT	p.V118V	ATP6AP1L_uc003khw.2_Silent_p.V118V	NM_001017971	NP_001017971	Q52LC2	VAS1L_HUMAN	ATPase, H+ transporting, lysosomal accessory	118					ATP hydrolysis coupled proton transport	integral to membrane|proton-transporting V-type ATPase, V1 domain	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						TGTGGGAGGTCACTTTTATTG	0.507											OREG0016689	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	21	58					0	0	1	0	0
ERAP1	51752	broad.mit.edu	37	5	96139153	96139153	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:96139153G>A	uc003kmm.2	-	2	824	c.477C>T	c.(475-477)TTC>TTT	p.F159F	ERAP1_uc003kml.2_Silent_p.F159F|ERAP1_uc010jbm.1_Intron|ERAP1_uc003kmn.2_Silent_p.F159F	NM_001040458	NP_001035548	Q9NZ08	ERAP1_HUMAN	type 1 tumor necrosis factor receptor shedding	159	Lumenal (Potential).				angiogenesis|antigen processing and presentation of endogenous peptide antigen via MHC class I|fat cell differentiation|membrane protein ectodomain proteolysis|regulation of blood pressure|regulation of innate immune response|response to bacterium	cytosol|endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region|integral to membrane	aminopeptidase activity|interleukin-1, Type II receptor binding|interleukin-6 receptor binding|metalloexopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		all_cancers(142;1.75e-06)|all_epithelial(76;3.08e-09)|all_lung(232;0.000435)|Lung NSC(167;0.000601)|Ovarian(225;0.024)|Colorectal(57;0.0432)|Breast(839;0.244)		all cancers(79;7.26e-15)|COAD - Colon adenocarcinoma(37;0.071)		AAAATCCGTGGAAAGTCTCCG	0.478													22	86					0	0	1	0	0
LNPEP	4012	broad.mit.edu	37	5	96342189	96342189	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:96342189C>T	uc003kmv.1	+	11	2519	c.2005C>T	c.(2005-2007)CAA>TAA	p.Q669*	LNPEP_uc003kmw.1_Nonsense_Mutation_p.Q655*	NM_005575	NP_005566	Q9UIQ6	LCAP_HUMAN	leucyl/cystinyl aminopeptidase isoform 1	669	Extracellular (Potential).				cell-cell signaling|female pregnancy|proteolysis	extracellular region|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4		all_cancers(142;7e-07)|all_epithelial(76;9.52e-10)|all_lung(232;0.00101)|Lung NSC(167;0.00137)|Ovarian(225;0.024)|Colorectal(57;0.0269)|Breast(839;0.244)		COAD - Colon adenocarcinoma(37;0.072)		TTCAAAATATCAATCGGTATC	0.303													17	30					0	0	1	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101606459	101606459	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:101606459G>A	uc003knm.2	-	3	958	c.671C>T	c.(670-672)TCA>TTA	p.S224L		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	224	Helical; Name=4; (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		GTTAGAAAGTGAAGAAGTTGA	0.363													20	34					0	0	1	0	0
STARD4	134429	broad.mit.edu	37	5	110835665	110835665	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:110835665C>T	uc003kph.1	-	6	621	c.537G>A	c.(535-537)GGG>GGA	p.G179G	STARD4_uc010jbw.1_Silent_p.G81G|STARD4_uc010jbx.1_Silent_p.G81G|STARD4_uc003kpi.1_RNA	NM_139164	NP_631903	Q96DR4	STAR4_HUMAN	StAR-related lipid transfer (START) domain	179	START.				lipid transport		lipid binding			ovary(1)	1		all_cancers(142;0.00259)|all_epithelial(76;8.32e-05)|Prostate(80;0.0115)|Colorectal(10;0.0959)|Ovarian(225;0.156)|all_lung(232;0.18)|Lung NSC(167;0.248)		OV - Ovarian serous cystadenocarcinoma(64;4.91e-09)|Epithelial(69;1.39e-08)|all cancers(49;2.34e-06)|COAD - Colon adenocarcinoma(37;0.049)|Colorectal(14;0.138)		GAGGAATCATCCCACGCAGAT	0.413													29	118					0	0	1	0	0
AQPEP	206338	broad.mit.edu	37	5	115341655	115341655	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:115341655C>T	uc003kro.2	+	13	2248	c.2084C>T	c.(2083-2085)TCC>TTC	p.S695F	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	695	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						GATGCCTTTTCCTTGTCTAAG	0.348													9	47					0	0	1	0	0
PRR16	51334	broad.mit.edu	37	5	120022042	120022042	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:120022042C>T	uc003ksq.2	+	2	716	c.553C>T	c.(553-555)CAG>TAG	p.Q185*	PRR16_uc003ksp.2_Nonsense_Mutation_p.Q162*|PRR16_uc003ksr.2_Nonsense_Mutation_p.Q115*	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	185	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		GGCTCCAGTCCAGCTTCTGAT	0.473													17	58					0	0	1	0	0
PDLIM4	8572	broad.mit.edu	37	5	131607149	131607149	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:131607149C>T	uc003kwn.2	+	5	737	c.660C>T	c.(658-660)GCC>GCT	p.A220A	uc003kwm.3_Intron|PDLIM4_uc003kwp.2_Silent_p.A220A|PDLIM4_uc003kwo.2_Silent_p.A220A	NM_003687	NP_003678	P50479	PDLI4_HUMAN	PDZ and LIM domain 4 isoform 1	220							protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TGCTAGAGGCCGGCGAGGGCG	0.692													11	25					0	0	1	0	0
LECT2	3950	broad.mit.edu	37	5	135286927	135286927	+	Nonsense_Mutation	SNP	G	A	A	rs138618187		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:135286927G>A	uc003lbe.1	-	3	475	c.274C>T	c.(274-276)CGA>TGA	p.R92*	FBXL21_uc003lbc.2_RNA	NM_002302	NP_002293	O14960	LECT2_HUMAN	leukocyte cell-derived chemotaxin 2 precursor	92					chemotaxis|skeletal system development	cytoplasm|extracellular space				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCAGATATTCGAACACCATTA	0.443													17	39					0	0	1	0	0
TRPC7	57113	broad.mit.edu	37	5	135692713	135692713	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:135692713G>A	uc003lbn.1	-	1	363	c.360C>T	c.(358-360)ATC>ATT	p.I120I	TRPC7_uc010jef.1_Silent_p.I112I|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.I112I|TRPC7_uc010jei.1_Silent_p.I112I|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	121	Cytoplasmic (Potential).|ANK 3.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGGCCTCCACGATGCGCACAT	0.657													16	44					0	0	1	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139889228	139889228	+	Missense_Mutation	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:139889228C>G	uc003lfs.1	+	21	3896	c.3772C>G	c.(3772-3774)CTT>GTT	p.L1258V	ANKHD1_uc003lfq.1_Missense_Mutation_p.L1277V|ANKHD1_uc003lfr.2_Missense_Mutation_p.L1258V|ANKHD1_uc003lft.1_Missense_Mutation_p.L469V|ANKHD1_uc003lfu.1_Missense_Mutation_p.L738V|ANKHD1_uc003lfv.1_Missense_Mutation_p.L335V|ANKHD1-EIF4EBP3_uc011czh.1_5'UTR|ANKHD1_uc003lfw.2_5'Flank	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1258						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAGACGGGTCTTACCCCCTT	0.393													14	61					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432091	140432091	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140432091G>A	uc003lik.1	+	1	1113	c.1036G>A	c.(1036-1038)GAA>AAA	p.E346K		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	346	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAATCCTCCCGAAGTGATGGT	0.517													37	79					0	0	1	0	0
PCDHB16	57717	broad.mit.edu	37	5	140563687	140563687	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140563687C>T	uc003liv.2	+	1	2708	c.1553C>T	c.(1552-1554)TCG>TTG	p.S518L		NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	518	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCCTCAGGTCGCTGGACTAC	0.697													39	48					0	0	1	0	0
PCDHB15	56121	broad.mit.edu	37	5	140627082	140627082	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140627082G>A	uc003lje.2	+	1	1936	c.1936G>A	c.(1936-1938)GAC>AAC	p.D646N		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	646	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGGTCAAGGACAATGGCGA	0.706													18	80					0	0	1	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140723673	140723673	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140723673G>A	uc003ljm.1	+	1	73	c.73G>A	c.(73-75)GAA>AAA	p.E25K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_5'UTR|PCDHGA3_uc011dap.1_Missense_Mutation_p.E25K	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	25					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACGCTGTGCGAAACAGGATC	0.567											OREG0016855	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	56	176					0	0	1	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140734937	140734937	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140734937G>A	uc003ljq.1	+	1	170	c.170G>A	c.(169-171)CGG>CAG	p.R57Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.R57Q	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	57	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTGGCGCCCCGGGAGCTGGCG	0.632													28	84					0	0	1	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140751397	140751397	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140751397C>T	uc003ljw.1	+	1	1436	c.1436C>T	c.(1435-1437)CCC>CTC	p.P479L	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGA6_uc003ljy.1_5'Flank|PCDHGB3_uc011dat.1_Missense_Mutation_p.P479L|PCDHGA6_uc011dau.1_5'Flank	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	479	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCTCGGATCCCGACTTGGGA	0.612													24	111					0	0	1	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140774693	140774693	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140774693C>T	uc003lkd.1	+	1	3211	c.2313C>T	c.(2311-2313)CCC>CCT	p.P771P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.P771P	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	771	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATCTTTCCCCAGCCCAACT	0.483													18	86					0	0	1	0	0
PCDHGB6	56100	broad.mit.edu	37	5	140788545	140788545	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:140788545C>T	uc003lkj.1	+	1	776	c.776C>T	c.(775-777)TCC>TTC	p.S259F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lki.1_Missense_Mutation_p.S259F	NM_018926	NP_061749	Q9Y5F9	PCDGI_HUMAN	protocadherin gamma subfamily B, 6 isoform 1	259	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCCCTGGGTCCCCTGTGTTG	0.468													13	41					0	0	1	0	0
SPINK5	11005	broad.mit.edu	37	5	147488344	147488344	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:147488344G>A	uc003lox.2	+	18	1709	c.1636G>A	c.(1636-1638)GAT>AAT	p.D546N	SPINK5_uc010jgs.1_Missense_Mutation_p.D518N|SPINK5_uc010jgr.2_Missense_Mutation_p.D527N|SPINK5_uc003low.2_Missense_Mutation_p.D546N|SPINK5_uc003loy.2_Missense_Mutation_p.D546N	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	546	Kazal-like 8.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			gaagaaaaatgataaagaaga	0.204													23	94					0	0	1	0	0
SLC6A7	6534	broad.mit.edu	37	5	149576695	149576695	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:149576695C>T	uc003lrr.2	+	4	811	c.440C>T	c.(439-441)TCC>TTC	p.S147F		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	147	Extracellular (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	CTCTTCGCCTCCCTCACCAGC	0.622													13	55					0	0	1	0	0
LOC134466	134466	broad.mit.edu	37	5	150321863	150321863	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:150321863G>A	uc003lsz.1	-	3	304	c.155C>T	c.(154-156)TCC>TTC	p.S52F	LOC134466_uc003ltb.2_RNA|LOC134466_uc003lta.2_RNA					RecName: Full=Putative KRAB domain-containing protein LOC134466;												0						ATCTGGTTTGGAAACTGGATA	0.408													4	19					0	0	1	0	0
FAT2	2196	broad.mit.edu	37	5	150923154	150923154	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:150923154G>A	uc003lue.3	-	9	7547	c.7534C>T	c.(7534-7536)CCC>TCC	p.P2512S	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2512	Extracellular (Potential).|Cadherin 22.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GTGCCATAGGGACCACTATCT	0.438													42	147					0	0	1	0	0
GLRA1	2741	broad.mit.edu	37	5	151271999	151271999	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:151271999G>A	uc003lut.2	-	2	344	c.57C>T	c.(55-57)AGC>AGT	p.S19S	GLRA1_uc003lur.2_Silent_p.S19S|GLRA1_uc003lus.2_Intron	NM_001146040	NP_001139512	P23415	GLRA1_HUMAN	glycine receptor, alpha 1 isoform 1 precursor	19					muscle contraction|negative regulation of transmission of nerve impulse|neuropeptide signaling pathway|positive regulation of acrosome reaction|regulation of membrane potential|startle response	cell junction|chloride channel complex|integral to plasma membrane|intracellular membrane-bounded organelle|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|protein binding|receptor activity|taurine binding|transmitter-gated ion channel activity			ovary(1)|central_nervous_system(1)	2		all_hematologic(541;0.0341)|Medulloblastoma(196;0.0912)	Kidney(363;0.000171)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Ethanol(DB00898)|Glycine(DB00145)|Halothane(DB01159)|Isoflurane(DB00753)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AAGCAGCAAGGCTAAGGAGGA	0.512													10	42					0	0	1	0	0
GABRG2	2566	broad.mit.edu	37	5	161569295	161569295	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:161569295G>A	uc003lyz.3	+	7	1253	c.895G>A	c.(895-897)GAT>AAT	p.D299N	GABRG2_uc010jjc.2_Missense_Mutation_p.D339N|GABRG2_uc003lyy.3_Missense_Mutation_p.D299N|GABRG2_uc011dej.1_Missense_Mutation_p.D204N	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	299					gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GATCAATAAGGATGCTGTTCC	0.403													39	97					0	0	1	0	0
SLIT3	6586	broad.mit.edu	37	5	168123363	168123363	+	Missense_Mutation	SNP	C	T	T	rs142215582	byFrequency	TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:168123363C>T	uc003mab.2	-	28	3436	c.3016G>A	c.(3016-3018)GAA>AAA	p.E1006K	SLIT3_uc010jjg.2_Missense_Mutation_p.E1013K	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1006	EGF-like 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCATTGTTTTCGCAGTCGTTG	0.547													18	92					0	0	1	0	0
GRM6	2916	broad.mit.edu	37	5	178417617	178417617	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:178417617G>A	uc003mjr.2	-	4	1167	c.988C>T	c.(988-990)CTG>TTG	p.L330L	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	330	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		CTTTTGGGCAGGATGGTGATG	0.642													6	20					0	0	1	0	0
MGAT1	4245	broad.mit.edu	37	5	180219443	180219443	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:180219443G>A	uc003mmg.3	-	2	1024	c.529C>T	c.(529-531)CGC>TGC	p.R177C	MGAT1_uc010jlf.2_Missense_Mutation_p.R177C|MGAT1_uc010jlg.2_Missense_Mutation_p.R177C|MGAT1_uc003mmh.3_Missense_Mutation_p.R177C|MGAT1_uc010jlh.2_Missense_Mutation_p.R177C|MGAT1_uc003mmi.3_Missense_Mutation_p.R177C	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	177	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TGGAACTTGCGGTGGTCCGGC	0.701													31	69					0	0	1	0	0
BTNL3	10917	broad.mit.edu	37	5	180420145	180420145	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr5:180420145G>A	uc003mmr.2	+	2	510	c.382G>A	c.(382-384)GAG>AAG	p.E128K		NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	128	Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			GGCCACCTGGGAGCTGCGGGT	0.458													3	9					0	0	1	0	0
SIRT5	23408	broad.mit.edu	37	6	13592122	13592122	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:13592122C>T	uc003nay.2	+	5	767	c.471C>T	c.(469-471)ATC>ATT	p.I157I	SIRT5_uc003naw.2_Silent_p.I157I|SIRT5_uc003nax.2_Silent_p.I49I|SIRT5_uc011dit.1_Silent_p.I157I	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	157	Deacetylase sirtuin-type.				chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	TTCTGGAGATCCATGGTGAGA	0.597													6	24					0	0	1	0	0
KIAA0319	9856	broad.mit.edu	37	6	24569086	24569086	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:24569086G>A	uc011djo.1	-	13	2300	c.2063C>T	c.(2062-2064)ACC>ATC	p.T688I	KIAA0319_uc011djp.1_Missense_Mutation_p.T643I|KIAA0319_uc003neh.1_Missense_Mutation_p.T688I|KIAA0319_uc011djq.1_Missense_Mutation_p.T679I|KIAA0319_uc011djr.1_Missense_Mutation_p.T688I|KIAA0319_uc010jpt.1_Missense_Mutation_p.T99I	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	688	PKD 4.|Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						GAAGTGGTAGGTCCCCACCTG	0.512													22	68					0	0	1	0	0
FAM65B	9750	broad.mit.edu	37	6	24848308	24848308	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:24848308G>A	uc003neo.1	-	12	1198	c.1022C>T	c.(1021-1023)TCC>TTC	p.S341F	FAM65B_uc011djs.1_Missense_Mutation_p.S370F|FAM65B_uc011dju.1_Missense_Mutation_p.S375F|FAM65B_uc003nep.2_Missense_Mutation_p.S341F|FAM65B_uc011djt.1_Missense_Mutation_p.S341F	NM_014722	NP_055537	Q9Y4F9	FA65B_HUMAN	hypothetical protein LOC9750 isoform 1	341					cell differentiation|muscle organ development	cytoskeleton|filopodium|mitochondrion	binding			ovary(1)	1						GCTGTACATGGACATTCTCCT	0.527													7	27					0	0	1	0	0
SCAND3	114821	broad.mit.edu	37	6	28541494	28541494	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:28541494C>T	uc003nlo.2	-	4	2790	c.2172G>A	c.(2170-2172)GGG>GGA	p.G724G		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	724					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ttttggttttcccttcttcag	0													13	27					0	0	1	0	0
GABBR1	2550	broad.mit.edu	37	6	29574966	29574966	+	Missense_Mutation	SNP	A	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:29574966A>T	uc003nmt.3	-	17	2358	c.2022T>A	c.(2020-2022)TTT>TTA	p.F674L	GABBR1_uc003nmp.3_Missense_Mutation_p.F557L|GABBR1_uc003nms.3_Missense_Mutation_p.F557L|GABBR1_uc003nmu.3_Missense_Mutation_p.F612L|GABBR1_uc011dlr.1_Missense_Mutation_p.F497L	NM_001470	NP_001461	Q9UBS5	GABR1_HUMAN	gamma-aminobutyric acid (GABA) B receptor 1	674	Helical; Name=3; (Potential).				gamma-aminobutyric acid signaling pathway|negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|extracellular region|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(5)|liver(1)|skin(1)	7					Baclofen(DB00181)|Progabide(DB00837)	AGCCCAGACTAAAGCCCAGGC	0.562													19	68					0	0	1	0	0
MSH5	4439	broad.mit.edu	37	6	31726370	31726370	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:31726370C>T	uc003nwv.1	+	14	1268	c.1189C>T	c.(1189-1191)CCC>TCC	p.P397S	MSH5_uc003nwt.1_Missense_Mutation_p.P414S|MSH5_uc003nwu.1_Missense_Mutation_p.P397S|MSH5_uc003nww.1_Missense_Mutation_p.P397S|MSH5_uc003nwx.1_Missense_Mutation_p.P414S|MSH5_uc011dof.1_Missense_Mutation_p.P96S|MSH5_uc003nwy.1_Missense_Mutation_p.P71S|MSH5_uc003nwz.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	397					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						CACAGTCCTCCCCAACATAGA	0.532								Direct_reversal_of_damage|MMR					10	50					0	0	1	0	0
MSH5	4439	broad.mit.edu	37	6	31730276	31730276	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:31730276G>A	uc003nwv.1	+	25	2552	c.2473G>A	c.(2473-2475)GAA>AAA	p.E825K	MSH5_uc003nwt.1_Missense_Mutation_p.E842K|MSH5_uc003nwu.1_Missense_Mutation_p.E826K|MSH5_uc003nww.1_Missense_Mutation_p.E825K|MSH5_uc003nwx.1_Missense_Mutation_p.E813K|MSH5_uc011dof.1_Missense_Mutation_p.E524K|MSH5_uc003nwy.1_Missense_Mutation_p.E469K|MSH5_uc003nwz.3_RNA|C6orf26_uc003nxa.3_5'Flank	NM_172166	NP_751898	O43196	MSH5_HUMAN	mutS homolog 5 isoform c	825					chiasma assembly|homologous chromosome segregation|meiotic prophase II|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			ovary(2)|breast(1)	3						CATGAGCCAGGAAGTGCTGCC	0.507								Direct_reversal_of_damage|MMR					15	50					0	0	1	0	0
AGPAT1	10554	broad.mit.edu	37	6	32137789	32137789	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:32137789G>A	uc003oae.2	-	6	951	c.633C>T	c.(631-633)TCC>TCT	p.S211S	PPT2_uc003nzy.1_Intron|AGPAT1_uc011dpj.1_RNA|AGPAT1_uc011dpk.1_Silent_p.S175S|AGPAT1_uc003oaf.2_Silent_p.S211S|AGPAT1_uc003oag.2_Silent_p.S101S|AGPAT1_uc003oah.2_Silent_p.S211S|AGPAT1_uc003oai.1_Silent_p.S211S|AGPAT1_uc011dpl.1_Silent_p.S99S	NM_006411	NP_006402	Q99943	PLCA_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 1	211					energy reserve metabolic process|phosphatidic acid biosynthetic process|positive regulation of cellular metabolic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			central_nervous_system(1)	1						CTTGGTAGGAGGACATGACTA	0.562													10	51					0	0	1	0	0
TAP2	6891	broad.mit.edu	37	6	32805546	32805546	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:32805546G>A	uc003occ.2	-	1	496	c.465C>T	c.(463-465)GCC>GCT	p.A155A	TAP2_uc011dqf.1_Silent_p.A155A|TAP2_uc003ocb.1_Silent_p.A155A|TAP2_uc003ocd.2_Silent_p.A155A	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	155	Helical; Name=4; (Potential).|ABC transmembrane type-1.				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						GGAAGAAGAAGGCGGCAACGA	0.552													15	58					0	0	1	0	0
ZBTB22	9278	broad.mit.edu	37	6	33284653	33284653	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:33284653G>A	uc003oeb.2	-	2	193	c.41C>T	c.(40-42)CCC>CTC	p.P14L	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.P14L	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	14					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CAGCGGCAGGGGAAGTGCTGC	0.647													4	19					0	0	1	0	0
IP6K3	117283	broad.mit.edu	37	6	33690964	33690964	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:33690964C>T	uc010jvf.2	-	7	1302	c.766G>A	c.(766-768)GTT>ATT	p.V256I	IP6K3_uc003ofb.2_Missense_Mutation_p.V256I	NM_001142883	NP_001136355	Q96PC2	IP6K3_HUMAN	inositol hexakisphosphate kinase 3	256					inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|protein phosphorylation	cytoplasm	ATP binding|inositol hexakisphosphate 5-kinase activity|inositol hexakisphosphate 6-kinase activity|inositol trisphosphate 3-kinase activity				0						GTTTGATAAACCTTACATTAA	0.358													8	33					0	0	1	0	0
GRM4	2914	broad.mit.edu	37	6	34100929	34100929	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:34100929G>A	uc003oir.3	-	1	515	c.345C>T	c.(343-345)GCC>GCT	p.A115A	GRM4_uc011dsn.1_Silent_p.A115A|GRM4_uc010jvh.2_Silent_p.A115A|GRM4_uc010jvi.2_5'UTR|GRM4_uc010jvk.1_Silent_p.A34A	NM_000841	NP_000832	Q14833	GRM4_HUMAN	glutamate receptor, metabotropic 4 precursor	115	Extracellular (Potential).				activation of MAPK activity|inhibition of adenylate cyclase activity by metabotropic glutamate receptor signaling pathway|neuroprotection|neurotransmitter secretion|positive regulation of MAPKKK cascade	cytoplasmic vesicle|integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	6					L-Glutamic Acid(DB00142)	ACTGCTCGAGGGCATGGGTGT	0.627													8	23					0	0	1	0	0
UHRF1BP1	54887	broad.mit.edu	37	6	34825568	34825568	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:34825568C>T	uc003oju.3	+	13	1875	c.1641C>T	c.(1639-1641)CTC>CTT	p.L547L	UHRF1BP1_uc010jvm.1_RNA|UHRF1BP1_uc010jvn.2_RNA|UHRF1BP1_uc010jvo.2_5'Flank	NM_017754	NP_060224	Q6BDS2	URFB1_HUMAN	ICBP90 binding protein 1	547										ovary(3)	3						TCAGTTTGCTCTGGGGAAACC	0.423													40	101					0	0	1	0	0
CLPS	1208	broad.mit.edu	37	6	35765004	35765004	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:35765004G>A	uc003ole.1	-	1	99	c.62C>T	c.(61-63)CCC>CTC	p.P21L	CLPS_uc003olf.1_Missense_Mutation_p.P21L	NM_001832	NP_001823	P04118	COL_HUMAN	colipase preproprotein	21					lipid catabolic process|lipid digestion|retinoid metabolic process|steroid metabolic process	extracellular region					0						GATCCCCCGGGGGCCAGGAGC	0.587													17	115					0	0	1	0	0
ETV7	51513	broad.mit.edu	37	6	36334677	36334677	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:36334677C>T	uc003omb.2	-	7	1032	c.883G>A	c.(883-885)GAA>AAA	p.E295K	ETV7_uc003olz.1_Missense_Mutation_p.E295K|ETV7_uc003oma.1_Missense_Mutation_p.E240K|ETV7_uc010jwg.2_RNA|ETV7_uc003omc.2_Missense_Mutation_p.E240K|ETV7_uc010jwj.2_Missense_Mutation_p.E236K|ETV7_uc010jwh.2_Missense_Mutation_p.E214K|ETV7_uc010jwi.2_Missense_Mutation_p.E218K|ETV7_uc011dtl.1_Missense_Mutation_p.E144K	NM_016135	NP_057219	Q9Y603	ETV7_HUMAN	ets variant 7	295	ETS.				organ morphogenesis|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TGCCCCGGTTCCTTCTTAATG	0.542													75	277					0	0	1	0	0
DNAH8	1769	broad.mit.edu	37	6	38810498	38810498	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:38810498G>A	uc003ooe.1	+	33	4613	c.4013G>A	c.(4012-4014)AGA>AAA	p.R1338K		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTCAAAAAGAGAATTGATGAT	0.378													30	73					0	0	1	0	0
KCNK5	8645	broad.mit.edu	37	6	39159151	39159151	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:39159151G>A	uc003oon.2	-	5	1379	c.1015C>T	c.(1015-1017)CCT>TCT	p.P339S		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	339					excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						ACCAGGGAAGGGGGCAGTGCT	0.652													12	64					0	0	1	0	0
ENPP5	59084	broad.mit.edu	37	6	46133237	46133237	+	Missense_Mutation	SNP	T	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:46133237T>G	uc003oxz.1	-	3	1101	c.893A>C	c.(892-894)AAA>ACA	p.K298T	ENPP5_uc003oya.1_Missense_Mutation_p.K298T|ENPP5_uc011dvz.1_Missense_Mutation_p.K204T|ENPP5_uc010jzc.1_Missense_Mutation_p.K298T	NM_021572	NP_067547	Q9UJA9	ENPP5_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	298						extracellular region|integral to membrane	hydrolase activity				0						AACGTCTTCTTTTTTGTAAAC	0.388													40	139					0	0	1	0	0
ICK	22858	broad.mit.edu	37	6	52905945	52905945	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:52905945G>A	uc003pbh.2	-	3	580	c.90C>T	c.(88-90)ATC>ATT	p.I30I	ICK_uc003pbi.2_Silent_p.I30I|ICK_uc003pbj.2_Silent_p.I30I	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	30	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					TTTTAATAGCGATCAGCTCCC	0.473													38	105					0	0	1	0	0
FAM83B	222584	broad.mit.edu	37	6	54806758	54806758	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:54806758C>T	uc003pck.2	+	5	3105	c.2989C>T	c.(2989-2991)CGA>TGA	p.R997*		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	997										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					GAACAAGTTTCGAGGATTTAT	0.333													20	47					0	0	1	0	0
COL21A1	81578	broad.mit.edu	37	6	55933887	55933887	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:55933887C>T	uc003pcs.2	-	22	2280	c.2048G>A	c.(2047-2049)GGA>GAA	p.G683E	COL21A1_uc010jzz.2_Missense_Mutation_p.G68E|COL21A1_uc011dxg.1_Missense_Mutation_p.G68E|COL21A1_uc011dxh.1_Missense_Mutation_p.G68E|COL21A1_uc003pcr.2_Missense_Mutation_p.E41K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	683	Collagen-like 4.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCCTGGTTCTCCTGGGGAACC	0.418													4	15					0	0	1	0	0
KIAA1586	57691	broad.mit.edu	37	6	56917839	56917839	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:56917839C>T	uc003pdj.2	+	4	712	c.542C>T	c.(541-543)TCC>TTC	p.S181F	KIAA1586_uc011dxm.1_Missense_Mutation_p.S154F	NM_020931	NP_065982	Q9HCI6	K1586_HUMAN	hypothetical protein LOC57691	181							nucleic acid binding				0	Lung NSC(77;0.0969)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			GTCCATGTGTCCAAGGAATGG	0.363													27	99					0	0	1	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904250	73904250	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:73904250G>A	uc003pgk.2	+	14	2259	c.1912G>A	c.(1912-1914)GCC>ACC	p.A638T	KCNQ5_uc011dyh.1_Missense_Mutation_p.A657T|KCNQ5_uc011dyi.1_Missense_Mutation_p.A648T|KCNQ5_uc010kat.2_Missense_Mutation_p.A629T|KCNQ5_uc011dyj.1_Missense_Mutation_p.A528T|KCNQ5_uc011dyk.1_Missense_Mutation_p.A388T	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	638					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CTCTGCCTCAGCCCTCGCTTT	0.478													15	60					0	0	1	0	0
PRSS35	167681	broad.mit.edu	37	6	84234034	84234034	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:84234034G>A	uc003pjz.2	+	2	1037	c.874G>A	c.(874-876)GAA>AAA	p.E292K	PRSS35_uc010kbm.2_Missense_Mutation_p.E292K	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	292	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		GAAATACATGGAACTTGGAAT	0.488													27	71					0	0	1	0	0
BACH2	60468	broad.mit.edu	37	6	90648060	90648060	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:90648060G>A	uc011eab.1	-	8	2655	c.1846C>T	c.(1846-1848)CCT>TCT	p.P616S	BACH2_uc003pnw.2_Missense_Mutation_p.P616S	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	616						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		ACAGGAAAAGGAAGTTTTACC	0.353													5	53					0	0	1	0	0
RFX6	222546	broad.mit.edu	37	6	117245850	117245850	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:117245850G>A	uc003pxm.2	+	15	1637	c.1574G>A	c.(1573-1575)CGA>CAA	p.R525Q		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	525					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CATTTGATTCGAATGCTTCTC	0.383													20	86					0	0	1	0	0
MCM9	254394	broad.mit.edu	37	6	119245020	119245020	+	Missense_Mutation	SNP	G	A	A	rs150656647		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:119245020G>A	uc003pyh.2	-	3	840	c.577C>T	c.(577-579)CCA>TCA	p.P193S		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	193					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		CACCTGGTTGGAGACGAAGAC	0.418													20	54					0	0	1	0	0
PTPRK	5796	broad.mit.edu	37	6	128294930	128294930	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:128294930C>T	uc003qbk.2	-	28	4376	c.4009G>A	c.(4009-4011)GGA>AGA	p.G1337R	PTPRK_uc003qbj.2_Missense_Mutation_p.G1338R|PTPRK_uc010kfc.2_Missense_Mutation_p.G1344R|PTPRK_uc011ebu.1_Missense_Mutation_p.G1360R	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1337	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GAAGCCCATCCTAGGTACTGA	0.443													20	90					0	0	1	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597327	136597327	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:136597327C>T	uc003qgx.1	-	5	1589	c.1336G>A	c.(1336-1338)GGC>AGC	p.G446S	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.G444S|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.G444S	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	446					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCTCTATTGCCTTTCAGTGAA	0.393													10	206					0	0	1	0	0
HIVEP2	3097	broad.mit.edu	37	6	143093351	143093351	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:143093351G>A	uc003qjd.2	-	5	3268	c.2525C>T	c.(2524-2526)TCA>TTA	p.S842L		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	842					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TGGGGCTTCTGAAATCTCACT	0.547													15	34					0	0	1	0	0
LATS1	9113	broad.mit.edu	37	6	150005421	150005421	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:150005421C>T	uc003qmu.1	-	4	1352	c.804G>A	c.(802-804)TGG>TGA	p.W268*	LATS1_uc010kif.1_Nonsense_Mutation_p.W163*|LATS1_uc003qmv.1_Nonsense_Mutation_p.W268*|LATS1_uc003qmw.2_Nonsense_Mutation_p.W268*|LATS1_uc010kig.1_Nonsense_Mutation_p.W163*	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	268					cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		AGTTTGGTTCCCATGAAGGGG	0.547													53	135					0	0	1	0	0
RMND1	55005	broad.mit.edu	37	6	151766735	151766735	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:151766735T>C	uc003qoi.2	-	2	392	c.212A>G	c.(211-213)AAC>AGC	p.N71S	RMND1_uc011eeq.1_5'Flank|RMND1_uc003qoj.2_Missense_Mutation_p.N71S|RMND1_uc011eer.1_Missense_Mutation_p.N71S	NM_017909	NP_060379	Q9NWS8	RMND1_HUMAN	required for meiotic nuclear division 1 homolog	71											0		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.146)	OV - Ovarian serous cystadenocarcinoma(155;6.8e-11)		CTTTTTTTGGTTCATTTCCAG	0.413													67	164					0	0	1	0	0
PNLDC1	154197	broad.mit.edu	37	6	160240298	160240298	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:160240298C>T	uc003qsx.1	+	18	1584	c.1413C>T	c.(1411-1413)ATC>ATT	p.I471I	PNLDC1_uc003qsy.1_Silent_p.I482I	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	471	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		CGCGGAACATCCTGAAGGAGT	0.602													12	47					0	0	1	0	0
MAP3K4	4216	broad.mit.edu	37	6	161508765	161508766	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:161508765_161508766AC>TT	uc003qtn.2	+	10	2744_2745	c.2602_2603AC>TT	c.(2602-2604)ACT>TTT	p.T868F	MAP3K4_uc010kkc.1_Missense_Mutation_p.T868F|MAP3K4_uc003qto.2_Missense_Mutation_p.T868F|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.T321F	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	868					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TGTTCCAGACACTCTTGCTGAG	0.391													23	80					0	0	1	0	0
PDE10A	10846	broad.mit.edu	37	6	165832235	165832235	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:165832235G>A	uc003qun.2	-	12	1097	c.856C>T	c.(856-858)CGT>TGT	p.R286C	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.R216C|PDE10A_uc003quo.2_Missense_Mutation_p.R296C	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	286	GAF 2.|Allosteric effector binding.				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	AGCGCACAACGATCGGCATTC	0.373													16	39					0	0	1	0	0
C6orf70	55780	broad.mit.edu	37	6	170156844	170156844	+	Silent	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr6:170156844C>A	uc003qxg.1	+	5	480	c.447C>A	c.(445-447)CCC>CCA	p.P149P	C6orf70_uc011ehb.1_Silent_p.P23P|C6orf70_uc003qxh.1_Silent_p.P149P|C6orf70_uc010kky.1_Silent_p.P23P	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	149						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		AGGAATGCCCCTTTCTTTTAA	0.328													27	82					2.61193e-14	2.66301e-14	1	1	0
TNRC18	84629	broad.mit.edu	37	7	5430119	5430119	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:5430119C>T	uc003soi.3	-	4	833	c.484G>A	c.(484-486)GGA>AGA	p.G162R	TNRC18_uc010ksx.1_Missense_Mutation_p.G88R|TNRC18_uc003sok.1_Missense_Mutation_p.G88R	NM_001080495	NP_001073964	O15417	TNC18_HUMAN	trinucleotide repeat containing 18	162							DNA binding				0		Ovarian(82;0.142)		UCEC - Uterine corpus endometrioid carcinoma (126;0.195)|OV - Ovarian serous cystadenocarcinoma(56;5.32e-15)		GTCTTACCTCCTCCTGGCCCC	0.652													6	23					0	0	1	0	0
THSD7A	221981	broad.mit.edu	37	7	11500355	11500355	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:11500355G>A	uc003ssf.3	-	11	2791	c.2539C>T	c.(2539-2541)CCT>TCT	p.P847S		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	847	Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		ACGCTCCAAGGGACTAATTGG	0.547										HNSCC(18;0.044)			4	15					0	0	1	0	0
WIPF3	644150	broad.mit.edu	37	7	29918687	29918687	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:29918687C>T	uc003taj.1	+	3	286	c.286C>T	c.(286-288)CCC>TCC	p.P96S		NM_001080529	NP_001073998	A6NGB9	WIPF3_HUMAN	WAS/WASL interacting protein family, member 3	96										ovary(1)	1						GAGCACACCTCCCACCCTGGG	0.517													10	17					0	0	1	0	0
INMT	11185	broad.mit.edu	37	7	30795321	30795321	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:30795321C>T	uc003tbs.1	+	3	662	c.646C>T	c.(646-648)CTG>TTG	p.L216L	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Silent_p.L215L	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	216						cytoplasm	amine N-methyltransferase activity				0						CTGCGTGGCCCTGGAGAAAGA	0.587													24	63					0	0	1	0	0
FAM188B	84182	broad.mit.edu	37	7	30831093	30831094	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:30831093_30831094CC>AT	uc003tbt.2	+	5	1053_1054	c.976_977CC>AT	c.(976-978)CCC>ATC	p.P326I	FAM188B_uc010kwe.2_Missense_Mutation_p.P297I	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	326											0						GGACAGGATGCCCTTGAAGCTC	0.634													13	29					0	0	1	0	0
BBS9	27241	broad.mit.edu	37	7	33388771	33388771	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:33388771T>C	uc003tdn.1	+	13	1934	c.1421T>C	c.(1420-1422)TTT>TCT	p.F474S	BBS9_uc003tdo.1_Missense_Mutation_p.F474S|BBS9_uc003tdp.1_Missense_Mutation_p.F474S|BBS9_uc003tdq.1_Missense_Mutation_p.F474S|BBS9_uc010kwn.1_RNA|BBS9_uc003tdr.1_5'UTR|BBS9_uc003tds.1_5'Flank|BBS9_uc011kao.1_Missense_Mutation_p.F352S	NM_198428	NP_940820	Q3SYG4	PTHB1_HUMAN	parathyroid hormone-responsive B1 isoform 2	474					fat cell differentiation|response to stimulus|visual perception	BBSome|cilium membrane|microtubule organizing center|nucleus	protein binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			GBM - Glioblastoma multiforme(11;0.0894)			CAGTTCACCTTTGAATTTATG	0.333									Bardet-Biedl_syndrome				22	64					0	0	1	0	0
OGDH	4967	broad.mit.edu	37	7	44685012	44685012	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:44685012C>T	uc003tln.2	+	3	418	c.309C>T	c.(307-309)TCC>TCT	p.S103S	OGDH_uc003tlm.2_Silent_p.S103S|OGDH_uc011kbx.1_Silent_p.S103S|OGDH_uc011kby.1_Intron|OGDH_uc003tlp.2_Silent_p.S103S|OGDH_uc011kbz.1_5'UTR|OGDH_uc003tlo.1_5'UTR	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	103					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	GCCGAGGCTCCCTGGCTGCTG	0.592													29	104					0	0	1	0	0
ADCY1	107	broad.mit.edu	37	7	45697426	45697426	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:45697426G>A	uc003tne.3	+	6	1267	c.1249G>A	c.(1249-1251)GAC>AAC	p.D417N	ADCY1_uc003tnd.2_Missense_Mutation_p.D192N	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	417	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	GTGGCAGTACGACGTGTGGTC	0.617													8	23					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47853608	47853608	+	Missense_Mutation	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:47853608C>A	uc003tny.1	-	48	7094	c.7094G>T	c.(7093-7095)GGA>GTA	p.G2365V	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Missense_Mutation_p.G92V	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2365	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TCCAAGAGCTCCAGGCTGAAA	0.458													12	34					0.00010058	0.000101097	1	1	0
PKD1L1	168507	broad.mit.edu	37	7	47970731	47970731	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:47970731G>A	uc003tny.1	-	6	707	c.707C>T	c.(706-708)CCG>CTG	p.P236L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	236	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						ATGTGAAATCGGCCACAGGGG	0.597													9	41					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48316106	48316106	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:48316106G>A	uc003toq.2	+	17	6868	c.6843G>A	c.(6841-6843)GAG>GAA	p.E2281E	ABCA13_uc010kyr.2_Silent_p.E1784E	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	2281					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AAGATTCTGAGAACAAAATAT	0.338													10	21					0	0	1	0	0
IKZF1	10320	broad.mit.edu	37	7	50444451	50444451	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:50444451C>T	uc003tow.3	+	5	549	c.381C>T	c.(379-381)ATC>ATT	p.I127I	IKZF1_uc003tox.3_Silent_p.I127I|IKZF1_uc003toy.3_Silent_p.I127I|IKZF1_uc011kck.1_Intron|IKZF1_uc003toz.3_Silent_p.I97I|IKZF1_uc010kyx.2_Intron	NM_006060	NP_006051	Q13422	IKZF1_HUMAN	zinc finger protein, subfamily 1A, 1 (Ikaros)	127	C2H2-type 1.				cell cycle|chromatin modification|mesoderm development	cytoplasm|nucleus	zinc ion binding	p.?(74)		haematopoietic_and_lymphoid_tissue(147)|lung(1)	148	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;7.29e-10)|all_hematologic(4;4.8e-07)				TCATTTGCATCGGGCCCAATG	0.517			D		ALL								7	38					0	0	1	0	0
LOC442308	442308	broad.mit.edu	37	7	55713319	55713319	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:55713319G>A	uc010kzj.2	+	1		c.8G>A				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						AACCATGAAGGAAATTGTGCA	0.433													6	19					0	0	1	0	0
SBDS	51119	broad.mit.edu	37	7	66458322	66458322	+	Missense_Mutation	SNP	A	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:66458322A>T	uc003tvm.1	-	3	525	c.341T>A	c.(340-342)ATT>AAT	p.I114N		NM_016038	NP_057122	Q9Y3A5	SBDS_HUMAN	Shwachman-Bodian-Diamond syndrome protein	114				I -> F (in Ref. 2; AAD34092).	bone marrow development|bone mineralization|leukocyte chemotaxis|mature ribosome assembly|mitotic spindle stabilization|positive regulation of translation|ribosomal large subunit biogenesis|rRNA processing	cytoplasm|nucleolus|nucleoplasm|spindle pole	microtubule binding|ribosome binding|rRNA binding			ovary(1)	1						GTCTGCCACAATAGTTGCAAT	0.398			Gene Conversion			AML|MDS			Shwachman-Diamond_syndrome				43	145					0	0	1	0	0
LOC100132832	100132832	broad.mit.edu	37	7	76681226	76681226	+	RNA	SNP	G	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:76681226G>C	uc003ufy.2	+	5		c.1203G>C				NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						TGTCACACTTGAAGGAGGCAG	0.453													2	9					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82545844	82545844	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:82545844C>T	uc003uhx.2	-	7	11747	c.11458G>A	c.(11458-11460)GAA>AAA	p.E3820K	PCLO_uc003uhv.2_Missense_Mutation_p.E3820K|PCLO_uc010lec.2_Missense_Mutation_p.E785K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3751					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TAGGCTCGTTCTCTCTTTTCT	0.453													34	73					0	0	1	0	0
COL1A2	1278	broad.mit.edu	37	7	94049738	94049738	+	Missense_Mutation	SNP	T	A	A	rs407599		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:94049738T>A	uc003ung.1	+	36	2640	c.2169T>A	c.(2167-2169)AAT>AAA	p.N723K	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfi.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	723			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CTGGCCCCAATGGATTTGCTG	0.448										HNSCC(75;0.22)			19	62					0	0	1	0	0
CYP3A4	1576	broad.mit.edu	37	7	99365994	99365994	+	Missense_Mutation	SNP	G	A	A	rs55901263		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:99365994G>A	uc003urv.1	-	7	757	c.653C>T	c.(652-654)CCA>CTA	p.P218L	CYP3A4_uc003urw.1_Missense_Mutation_p.P218L|CYP3A4_uc011kiz.1_Missense_Mutation_p.P177L|CYP3A4_uc011kja.1_Missense_Mutation_p.P169L|CYP3A4_uc011kjb.1_Missense_Mutation_p.P68L	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	218					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	GAGAAAGAATGGATCCAAAAA	0.279													18	66					0	0	1	0	0
ZAN	7455	broad.mit.edu	37	7	100349913	100349913	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:100349913G>A	uc003uwj.2	+	14	2350	c.2185G>A	c.(2185-2187)GAA>AAA	p.E729K	ZAN_uc003uwk.2_Missense_Mutation_p.E729K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	729	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CATCCCCACAGAAAAATCCAC	0.522													18	73					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100683600	100683600	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:100683600C>T	uc003uxp.1	+	3	8956	c.8903C>T	c.(8902-8904)TCT>TTT	p.S2968F	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2968	Extracellular (Potential).|Ser-rich.|48.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GCTAGTTCTTCTCCTACAACT	0.527													128	407					0	0	1	0	0
ORAI2	80228	broad.mit.edu	37	7	102087295	102087295	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:102087295C>T	uc010lhz.1	+	4	796	c.561C>T	c.(559-561)GGC>GGT	p.G187G	ORAI2_uc003uzj.2_Silent_p.G187G|ORAI2_uc003uzk.2_Silent_p.G187G|ORAI2_uc011kks.1_Silent_p.G110G	NM_001126340	NP_001119812	Q96SN7	ORAI2_HUMAN	ORAI calcium release-activated calcium modulator	187						integral to membrane	protein binding			ovary(1)|kidney(1)	2						CCCCACCTGGCCCTGGGAGTC	0.657													13	67					0	0	1	0	0
DNAJC2	27000	broad.mit.edu	37	7	102967028	102967028	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:102967028G>A	uc003vbo.2	-	5	785	c.534C>T	c.(532-534)TTC>TTT	p.F178F	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_5'UTR|DNAJC2_uc010lix.2_Silent_p.F178F|DNAJC2_uc003vbp.2_5'UTR|DNAJC2_uc003vbq.1_RNA	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	178	ZRF1-UBD.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						ACACTTCGAAGAAATTATCCT	0.378													11	64					0	0	1	0	0
SLC26A5	375611	broad.mit.edu	37	7	103029537	103029537	+	Missense_Mutation	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:103029537A>C	uc003vbz.2	-	14	1668	c.1432T>G	c.(1432-1434)TCC>GCC	p.S478A	SLC26A5_uc003vbt.1_Missense_Mutation_p.S478A|SLC26A5_uc003vbu.1_Missense_Mutation_p.S478A|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.S446A|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	478	Extracellular (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						AACAAGGAGGACACAAAAGTG	0.443													6	38					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107720127	107720127	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:107720127G>A	uc010ljo.1	-	15	1890	c.1806C>T	c.(1804-1806)CTC>CTT	p.L602L	LAMB4_uc003vey.2_Silent_p.L602L	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	602	Laminin IV type B.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CAGCCCCAGGGAGAACCCTGG	0.507													15	51					0	0	1	0	0
SPAM1	6677	broad.mit.edu	37	7	123594119	123594119	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:123594119G>A	uc003vld.2	+	4	897	c.495G>A	c.(493-495)AAG>AAA	p.K165K	SPAM1_uc003vle.2_Silent_p.K165K|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Silent_p.K165K|SPAM1_uc010lku.2_Silent_p.K165K	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	165					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	ATGTTTACAAGAATAGGTCTA	0.393													20	85					0	0	1	0	0
PAX4	5078	broad.mit.edu	37	7	127254563	127254563	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:127254563G>A	uc010lld.1	-	3	591	c.385C>T	c.(385-387)CTA>TTA	p.L129L	PAX4_uc003vmf.2_Silent_p.L127L|PAX4_uc003vmg.1_Silent_p.L129L|PAX4_uc003vmh.2_Silent_p.L127L	NM_006193	NP_006184	O43316	PAX4_HUMAN	paired box 4	137					cell differentiation|endocrine pancreas development|organ morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTGCACGGTAGTCCCTGGTCC	0.498													3	8					0	0	1	0	0
DGKI	9162	broad.mit.edu	37	7	137269993	137269993	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:137269993C>T	uc003vtt.2	-	14	1526	c.1525G>A	c.(1525-1527)GAC>AAC	p.D509N	DGKI_uc003vtu.2_Missense_Mutation_p.D209N	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	509					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						GGAGGCAAGTCGGGGTTTCTT	0.478													30	120					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141758083	141758083	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:141758083G>A	uc003vwy.2	+	31	3828	c.3774G>A	c.(3772-3774)GAG>GAA	p.E1258E		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1258	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATGACTCTGAGATCGCCAGCT	0.488													60	208					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141796173	141796173	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:141796173C>T	uc003vwy.2	+	42	5016	c.4962C>T	c.(4960-4962)TTC>TTT	p.F1654F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1654	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACAGTCAGTTCCTGCTGGGCC	0.592													11	58					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143028643	143028643	+	Splice_Site	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:143028643G>A	uc003wcr.1	+	10	1152	c.1065_splice	c.e10-1	p.G355_splice	CLCN1_uc011ktc.1_Splice_Site_p.G17_splice	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle						muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TACACCCTCAGGATTTGCTGT	0.473													15	63					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143042803	143042803	+	Missense_Mutation	SNP	C	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:143042803C>G	uc003wcr.1	+	17	2207	c.2120C>G	c.(2119-2121)TCC>TGC	p.S707C	CLCN1_uc011ktc.1_Missense_Mutation_p.S319C	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	707	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CGGCCCGAGTCCTTCGCCTTT	0.667											OREG0018402	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	4					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143095983	143095983	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:143095983G>A	uc003wcz.2	-	6	1134	c.1047C>T	c.(1045-1047)TCC>TCT	p.S349S		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	349	Extracellular (Potential).|Fibronectin type-III 1.					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				CCCAACGCAGGGAGAGCTGAG	0.637													4	26					0	0	1	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164323	150164323	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:150164323C>T	uc003whj.2	+	2	867	c.537C>T	c.(535-537)ATC>ATT	p.I179I		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	179						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		ATGAGCAGATCACCCAGGTGT	0.438													45	107					0	0	1	0	0
NUB1	51667	broad.mit.edu	37	7	151072975	151072975	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:151072975C>T	uc003wjx.2	+	13	1514	c.1509C>T	c.(1507-1509)TCC>TCT	p.S503S	NUB1_uc003wjw.2_Silent_p.S465S|NUB1_uc010lqc.2_RNA	NM_016118	NP_057202	Q9Y5A7	NUB1_HUMAN	NEDD8 ultimate buster-1	479					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|response to interferon-gamma|response to tumor necrosis factor|ubiquitin-dependent protein catabolic process	nucleus	protein binding				0			OV - Ovarian serous cystadenocarcinoma(82;0.00569)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		TAAATGATTCCAATCCTGAAA	0.483													40	163					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	152007158	152007158	+	Missense_Mutation	SNP	T	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr7:152007158T>A	uc003wla.2	-	6	961	c.742A>T	c.(742-744)ACT>TCT	p.T248S		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	248					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GCCCAACAAGTGCCTAAAATG	0.373			N		medulloblastoma								7	34					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2813131	2813131	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:2813131C>T	uc011kwk.1	-	64	10367	c.9977G>A	c.(9976-9978)GGA>GAA	p.G3326E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2655E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1217E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3326	Sushi 28.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGCGACTTTCCTGTCCATTT	0.488													16	57					0	0	1	0	0
PRSS55	203074	broad.mit.edu	37	8	10396060	10396060	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:10396060G>A	uc003wta.2	+	5	831	c.816G>A	c.(814-816)TGG>TGA	p.W272*	uc010lru.2_Intron|PRSS55_uc003wtb.2_Intron	NM_198464	NP_940866	Q6UWB4	PRS55_HUMAN	hypothetical protein LOC203074 precursor	272	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	serine-type endopeptidase activity			ovary(1)	1						TCATAAGCTGGGGAAAGAGCT	0.577													20	80					0	0	1	0	0
XKR6	286046	broad.mit.edu	37	8	10755495	10755495	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:10755495G>A	uc003wtk.1	-	3	1920	c.1893C>T	c.(1891-1893)CTC>CTT	p.L631L		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	631						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		GCAACTCATAGAGGAGTGGTC	0.453													49	69					0	0	1	0	0
MSR1	4481	broad.mit.edu	37	8	16001121	16001121	+	Splice_Site	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:16001121C>T	uc003wwz.2	-	8	1178	c.980_splice	c.e8-1	p.G327_splice	MSR1_uc010lsu.2_Splice_Site_p.G345_splice|MSR1_uc003wxa.2_Splice_Site_p.G327_splice|MSR1_uc003wxb.2_Splice_Site_p.G327_splice|MSR1_uc011kxz.1_Splice_Site_p.G101_splice	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1						cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CCAGAATTTCCTTGAGAAAAG	0.313													32	45					0	0	1	0	0
MTMR7	9108	broad.mit.edu	37	8	17218782	17218782	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:17218782C>T	uc003wxm.2	-	4	551	c.312G>A	c.(310-312)GTG>GTA	p.V104V		NM_004686	NP_004677	Q9Y216	MTMR7_HUMAN	myotubularin related protein 7	104							protein tyrosine phosphatase activity			skin(1)	1				Colorectal(111;0.112)		CCTCATATTTCACTGCAAGAA	0.443													37	72					0	0	1	0	0
SLC7A2	6542	broad.mit.edu	37	8	17417986	17417986	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:17417986C>T	uc011kyc.1	+	9	1617	c.1448C>T	c.(1447-1449)TCC>TTC	p.S483F	SLC7A2_uc011kyd.1_Missense_Mutation_p.S522F|SLC7A2_uc011kye.1_Missense_Mutation_p.S523F|SLC7A2_uc011kyf.1_Missense_Mutation_p.S483F	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	483	Cytoplasmic (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	TTCTGCCCCTCCCTTCTGCCA	0.537													50	114					0	0	1	0	0
LZTS1	11178	broad.mit.edu	37	8	20110389	20110389	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:20110389G>A	uc003wzr.2	-	2	1164	c.1053C>T	c.(1051-1053)AGC>AGT	p.S351S	LZTS1_uc010ltg.1_Silent_p.S351S	NM_021020	NP_066300	Q9Y250	LZTS1_HUMAN	leucine zipper, putative tumor suppressor 1	351	Potential.				cell cycle|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	cell junction|dendritic spine|Golgi apparatus|nucleolus|nucleoplasm|postsynaptic density|postsynaptic membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				Colorectal(74;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		CCTTCATGAGGCTCTCGAGCT	0.652													22	31					0	0	1	0	0
ADAM7	8756	broad.mit.edu	37	8	24365022	24365022	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:24365022C>T	uc003xeb.2	+	21	2351	c.2238C>T	c.(2236-2238)ATC>ATT	p.I746I	ADAM7_uc003xec.2_Intron	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	746	Cytoplasmic (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		CAAGAGGAATCGCAGATCCCA	0.313													17	106					0	0	1	0	0
EBF2	64641	broad.mit.edu	37	8	25708118	25708118	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:25708118C>T	uc003xes.1	-	15	1705	c.1688G>A	c.(1687-1689)GGA>GAA	p.G563E	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	563					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding	p.G563R(1)		ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		ACCTCTGAATCCATTTCCATT	0.488													26	157					0	0	1	0	0
ADRA1A	148	broad.mit.edu	37	8	26722384	26722384	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:26722384C>T	uc003xfh.1	-	1	539	c.103G>A	c.(103-105)GGC>AGC	p.G35S	ADRA1A_uc003xfc.1_Missense_Mutation_p.G35S|ADRA1A_uc010lul.1_Missense_Mutation_p.G35S|ADRA1A_uc003xfd.1_RNA|ADRA1A_uc003xfe.1_Missense_Mutation_p.G35S|ADRA1A_uc010lum.1_Missense_Mutation_p.G35S|ADRA1A_uc003xff.1_RNA|ADRA1A_uc003xfg.1_Missense_Mutation_p.G35S	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	35	Helical; Name=1; (By similarity).				activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	AGAATGAGGCCCCCCAAGATC	0.567													67	289					0	0	1	0	0
GPR124	25960	broad.mit.edu	37	8	37688326	37688326	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:37688326C>T	uc003xkj.2	+	7	1180	c.817C>T	c.(817-819)CTG>TTG	p.L273L	GPR124_uc010lvy.2_Silent_p.L273L	NM_032777	NP_116166	Q96PE1	GP124_HUMAN	G protein-coupled receptor 124 precursor	273	Extracellular (Potential).|Ig-like.				central nervous system development|endothelial cell migration|neuropeptide signaling pathway|regulation of angiogenesis|regulation of chemotaxis|sprouting angiogenesis	integral to membrane|plasma membrane	G-protein coupled receptor activity			large_intestine(2)|ovary(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(5;2.75e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			TGCCAGCTACCTGGGCAACGA	0.657													6	8					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39535042	39535042	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:39535042C>T	uc003xni.2	+	15	1618	c.1618C>T	c.(1618-1620)CCT>TCT	p.P540S	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.P516S	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	540	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ACAACCATTACCTTGTGAACG	0.308													22	25					0	0	1	0	0
ADAM18	8749	broad.mit.edu	37	8	39581320	39581320	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:39581320C>T	uc003xni.2	+	19	2071	c.2071C>T	c.(2071-2073)CTG>TTG	p.L691L	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.L667L	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	691	Helical; (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CTGGTTTATTCTGAGTTTCTG	0.328													22	72					0	0	1	0	0
ZMAT4	79698	broad.mit.edu	37	8	40554830	40554830	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:40554830G>A	uc003xnr.2	-	4	429	c.283C>T	c.(283-285)CAA>TAA	p.Q95*	ZMAT4_uc003xns.2_Nonsense_Mutation_p.Q95*	NM_024645	NP_078921	Q9H898	ZMAT4_HUMAN	zinc finger, matrin type 4 isoform a	95	Matrin-type 2.					nucleus	DNA binding|zinc ion binding			pancreas(1)|central_nervous_system(1)|skin(1)	3	Ovarian(28;0.00724)|Colorectal(14;0.0468)	all_cancers(7;0.00936)|all_epithelial(6;3.53e-06)|all_lung(54;0.0318)|Lung NSC(58;0.0919)|Esophageal squamous(32;0.15)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;0.00722)			ATTTTGCCTTGATAATGGGAA	0.517													31	122					0	0	1	0	0
ANK1	286	broad.mit.edu	37	8	41566359	41566359	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:41566359C>T	uc003xok.2	-	17	2019	c.1935G>A	c.(1933-1935)GAG>GAA	p.E645E	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_5'Flank|ANK1_uc003xoi.2_Silent_p.E645E|ANK1_uc003xoj.2_Silent_p.E645E|ANK1_uc003xol.2_Silent_p.E645E|ANK1_uc003xom.2_Silent_p.E678E	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	645	ANK 19.|89 kDa domain.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			CTGCGTGGCCCTCCTGGGCGG	0.622													30	161					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55538745	55538745	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:55538745C>T	uc003xsd.1	+	4	2451	c.2303C>T	c.(2302-2304)TCC>TTC	p.S768F	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	768					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ACTCAAAATTCCAAGGTTCAA	0.289													27	41					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55540577	55540577	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:55540577G>A	uc003xsd.1	+	4	4283	c.4135G>A	c.(4135-4137)GAA>AAA	p.E1379K	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1379					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GACAGACCCTGAATATAAAAA	0.328													13	88					0	0	1	0	0
TOX	9760	broad.mit.edu	37	8	59720330	59720330	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:59720330C>T	uc003xtw.1	-	9	1778	c.1557G>A	c.(1555-1557)AGG>AGA	p.R519R		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	519						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				GTGCTTTGTCCCTCTGCATGC	0.443											OREG0018787	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	62					0	0	1	0	0
TOX	9760	broad.mit.edu	37	8	59727942	59727942	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:59727942G>A	uc003xtw.1	-	7	1568	c.1347C>T	c.(1345-1347)CTC>CTT	p.L449L		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	449						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				CCTGCATGGGGAGCTGGTTCC	0.592													14	57					0	0	1	0	0
CNGB3	54714	broad.mit.edu	37	8	87680300	87680300	+	Nonsense_Mutation	SNP	A	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:87680300A>C	uc003ydx.2	-	5	636	c.590T>G	c.(589-591)TTA>TGA	p.L197*	CNGB3_uc010maj.2_Nonsense_Mutation_p.L59*	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	197	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GTACTCTGTTAAAGGCATCTT	0.413													82	121					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110420353	110420353	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:110420353G>A	uc003yne.2	+	18	1993	c.1889G>A	c.(1888-1890)GGA>GAA	p.G630E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	630	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CAAACCAAAGGAAAACCCAAC	0.403										HNSCC(38;0.096)			18	55					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110457569	110457569	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:110457569G>A	uc003yne.2	+	38	5575	c.5471G>A	c.(5470-5472)GGA>GAA	p.G1824E		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1824	Extracellular (Potential).|IPT/TIG 10.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TTGGCTCTGGGAAACCTGACT	0.473										HNSCC(38;0.096)			17	95					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113259285	113259285	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:113259285C>T	uc003ynu.2	-	64	10345	c.10186G>A	c.(10186-10188)GAT>AAT	p.D3396N	CSMD3_uc003yns.2_Missense_Mutation_p.D2598N|CSMD3_uc003ynt.2_Missense_Mutation_p.D3356N|CSMD3_uc011lhx.1_Missense_Mutation_p.D3227N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3396	Extracellular (Potential).|Sushi 27.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CACGTAAGATCAGGGAGGCAG	0.398										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	50					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113697683	113697683	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:113697683G>A	uc003ynu.2	-	15	2593	c.2434C>T	c.(2434-2436)CAG>TAG	p.Q812*	CSMD3_uc003yns.2_Nonsense_Mutation_p.Q84*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.Q772*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.Q708*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	812	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGGTCAGCCTGAAATTCCAAT	0.393										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			18	102					0	0	1	0	0
HAS2	3037	broad.mit.edu	37	8	122626951	122626951	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:122626951G>A	uc003yph.2	-	4	1595	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C		NM_005328	NP_005319	Q92819	HAS2_HUMAN	hyaluronan synthase 2	353	Cytoplasmic (Potential).					integral to plasma membrane	hyaluronan synthase activity		HAS2/PLAG1(10)	soft_tissue(10)|ovary(5)	15	Lung NSC(37;3.12e-08)|Ovarian(258;0.0254)|Hepatocellular(40;0.0997)|all_neural(195;0.142)		STAD - Stomach adenocarcinoma(47;0.00503)			TTGCTCCAACGGGTCTGCTGG	0.463													76	137					0	0	1	0	0
TG	7038	broad.mit.edu	37	8	133935613	133935613	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:133935613G>A	uc003ytw.2	+	22	4600	c.4559G>A	c.(4558-4560)GGC>GAC	p.G1520D	TG_uc010mdw.2_Missense_Mutation_p.G279D|TG_uc011ljb.1_5'UTR|TG_uc003ytx.1_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	1520	Thyroglobulin type-1 11.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AACGAAGCAGGCCTGCAATGT	0.577													9	51					0	0	1	0	0
WISP1	8840	broad.mit.edu	37	8	134232920	134232920	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:134232920G>A	uc003yub.2	+	3	522	c.446G>A	c.(445-447)GGC>GAC	p.G149D	WISP1_uc003yuc.2_Intron|WISP1_uc010meb.2_Intron|WISP1_uc010mec.2_Intron|WISP1_uc010med.2_Intron|WISP1_uc003yud.2_Intron	NM_003882	NP_003873	O95388	WISP1_HUMAN	WNT1 inducible signaling pathway protein 1	149	VWFC.				cell adhesion|cell-cell signaling|regulation of cell growth|Wnt receptor signaling pathway	extracellular region|soluble fraction	insulin-like growth factor binding			central_nervous_system(1)|kidney(1)	2	all_epithelial(106;5.39e-23)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			TGCATCGACGGCGCGGTGGGC	0.672													14	95					0	0	1	0	0
DENND3	22898	broad.mit.edu	37	8	142178153	142178153	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:142178153C>T	uc003yvy.2	+	13	1842	c.1564C>T	c.(1564-1566)CAC>TAC	p.H522Y	DENND3_uc010mep.2_Missense_Mutation_p.H483Y|DENND3_uc003yvz.1_Missense_Mutation_p.H206Y	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	522										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			TCCCGAAATCCACTTTCCGCT	0.512													38	165					0	0	1	0	0
PLEC	5339	broad.mit.edu	37	8	144994260	144994260	+	Silent	SNP	C	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:144994260C>A	uc003zaf.1	-	32	10310	c.10140G>T	c.(10138-10140)GTG>GTT	p.V3380V	PLEC_uc003zab.1_Silent_p.V3243V|PLEC_uc003zac.1_Silent_p.V3247V|PLEC_uc003zad.2_Silent_p.V3243V|PLEC_uc003zae.1_Silent_p.V3211V|PLEC_uc003zag.1_Silent_p.V3221V|PLEC_uc003zah.2_Silent_p.V3229V|PLEC_uc003zaj.2_Silent_p.V3270V	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3380	Globular 2.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						TGAAGCCACCCACGGGGACCT	0.632													39	58					6.97489e-18	7.13922e-18	1	1	0
GPAA1	8733	broad.mit.edu	37	8	145138666	145138667	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:145138666_145138667CC>TT	uc003zax.2	+	4	526_527	c.416_417CC>TT	c.(415-417)GCC>GTT	p.A139V	GPAA1_uc003zav.1_Missense_Mutation_p.A17V|GPAA1_uc003zaw.1_Missense_Mutation_p.A79V	NM_003801	NP_003792	O43292	GPAA1_HUMAN	glycosylphosphatidylinositol anchor attachment	139	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein complex assembly|protein retention in ER lumen	GPI-anchor transamidase complex	tubulin binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCGCGTGCTGCCAGCACCGAGT	0.653													13	43					0	0	1	0	0
CPSF1	29894	broad.mit.edu	37	8	145619714	145619714	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:145619714C>T	uc003zcj.2	-	32	3699	c.3624G>A	c.(3622-3624)ACG>ACA	p.T1208T	MIR939_hsa-mir-939|MI0005761_5'Flank	NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	1208					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			TGTAGAGCTGCGTGTCGATGA	0.622													12	15					0	0	1	0	0
IFNE	338376	broad.mit.edu	37	9	21481523	21481523	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:21481523C>T	uc003zpg.2	-	1	790	c.171G>A	c.(169-171)AGG>AGA	p.R57R	LOC554202_uc003zpe.2_Intron|LOC554202_uc003zpf.2_Intron	NM_176891	NP_795372	Q86WN2	IFNE_HUMAN	interferon, epsilon precursor	57					defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0						GAAAGTTTTTCCTGTGTGGTA	0.413													24	76					0	0	1	0	0
LOC442421	442421	broad.mit.edu	37	9	66501045	66501045	+	RNA	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:66501045T>C	uc004aed.1	+	3		c.1138T>C								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						TGTCTGGACTTCAGAGCACCT	0.562													2	1					0	0	1	0	0
PIP5K1B	8395	broad.mit.edu	37	9	71549834	71549834	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:71549834G>A	uc004agu.2	+	13	1535	c.1230G>A	c.(1228-1230)CGG>CGA	p.R410R	PIP5K1B_uc011lrq.1_Silent_p.R410R|PIP5K1B_uc004agv.2_RNA	NM_003558	NP_003549	O14986	PI51B_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	410						endomembrane system|membrane|uropod	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|protein binding			stomach(1)	1				Lung(182;0.133)		CTAAGAAACGGTGCAATTCAA	0.398													16	55					0	0	1	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609948	84609948	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:84609948G>A	uc004amn.2	+	4	4610	c.4563G>A	c.(4561-4563)AGG>AGA	p.R1521R		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1521						integral to membrane					0						TGCCCCACAGGAAGCCTGTGC	0.537													5	25					0	0	1	0	0
KIF27	55582	broad.mit.edu	37	9	86518517	86518517	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:86518517G>A	uc004ana.2	-	4	1060	c.916C>T	c.(916-918)CTG>TTG	p.L306L	KIF27_uc010mpw.2_Silent_p.L306L|KIF27_uc010mpx.2_Silent_p.L306L	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	306					cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						CTGCCTCCCAGAGAATCTTTC	0.458													24	78					0	0	1	0	0
C9orf79	286234	broad.mit.edu	37	9	90502088	90502089	+	Missense_Mutation	DNP	GG	AA	AA	rs139269965		TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:90502088_90502089GG>AA	uc004app.3	+	4	2721_2722	c.2686_2687GG>AA	c.(2686-2688)GGA>AAA	p.G896K	C9orf79_uc004apo.1_Missense_Mutation_p.G708K	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	896						integral to membrane				ovary(3)	3						CATTTTCCTGGGAAAACGTCCT	0.594													20	34					0	0	1	0	0
RNF20	56254	broad.mit.edu	37	9	104297796	104297796	+	Missense_Mutation	SNP	A	G	G			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:104297796A>G	uc004bbn.2	+	2	181	c.91A>G	c.(91-93)ACA>GCA	p.T31A		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	31					histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		TTCAGGGACCACAGTGGAAAC	0.453													8	49					0	0	1	0	0
C9orf152	401546	broad.mit.edu	37	9	112963442	112963442	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:112963442C>T	uc011lwk.1	-	2	1060	c.506G>A	c.(505-507)GGA>GAA	p.G169E		NM_001012993	NP_001013011	Q5JTZ5	CI152_HUMAN	hypothetical protein LOC401546	169											0						GATTCCGGTTCCTTGCTGAGT	0.493													58	162					0	0	1	0	0
SVEP1	79987	broad.mit.edu	37	9	113148336	113148337	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:113148336_113148337GG>AA	uc010mtz.2	-	43	10415_10416	c.10078_10079CC>TT	c.(10078-10080)CCT>TTT	p.P3360F	SVEP1_uc010mty.2_Missense_Mutation_p.P1286F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	3360	Sushi 33.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AATCACAAAAGGAACAGGGCAT	0.406													15	82					0	0	1	0	0
DFNB31	25861	broad.mit.edu	37	9	117185767	117185767	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:117185767G>A	uc004biz.3	-	7	2102	c.1453C>T	c.(1453-1455)CCG>TCG	p.P485S	DFNB31_uc004bix.2_Missense_Mutation_p.P134S|DFNB31_uc004biy.3_Missense_Mutation_p.P102S|DFNB31_uc004bja.3_Missense_Mutation_p.P485S	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	485					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						AGGTCTTGCGGGGAAATGGTG	0.632													17	73					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	118982375	118982375	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:118982375G>A	uc004bjn.2	+	5	2459	c.2078G>A	c.(2077-2079)TGG>TAG	p.W693*	PAPPA_uc011lxp.1_Nonsense_Mutation_p.W388*|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	693					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding	p.W693*(1)		ovary(4)|skin(4)|pancreas(1)	9						ACACTGGAGTGGTTCCCACCT	0.562													37	156					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119106834	119106834	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:119106834C>T	uc004bjn.2	+	14	4005	c.3624C>T	c.(3622-3624)TTC>TTT	p.F1208F	PAPPA_uc011lxq.1_Silent_p.F583F	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1208					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GCGTGCACTTCGCATGTGAGA	0.532													31	113					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119109484	119109484	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:119109484G>A	uc004bjn.2	+	15	4341	c.3960G>A	c.(3958-3960)TTG>TTA	p.L1320L	PAPPA_uc011lxq.1_Silent_p.L695L	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1320	Sushi 2.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CTGCACAATTGAAAGGTATCA	0.537													17	51					0	0	1	0	0
PAPPA	5069	broad.mit.edu	37	9	119115986	119115986	+	Nonsense_Mutation	SNP	A	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:119115986A>T	uc004bjn.2	+	17	4642	c.4261A>T	c.(4261-4263)AAA>TAA	p.K1421*	PAPPA_uc011lxq.1_Nonsense_Mutation_p.K796*	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1421	Sushi 4.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						ACCTCCACCAAAATTCCATGG	0.527													32	92					0	0	1	0	0
CDK5RAP2	55755	broad.mit.edu	37	9	123334274	123334274	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:123334274G>A	uc004bkf.2	-	2	286	c.105C>T	c.(103-105)CCC>CCT	p.P35P	CDK5RAP2_uc004bkg.2_Silent_p.P35P|CDK5RAP2_uc011lxw.1_5'UTR|CDK5RAP2_uc011lxx.1_RNA|CDK5RAP2_uc011lxy.1_RNA|CDK5RAP2_uc011lxz.1_5'UTR|CDK5RAP2_uc011lya.1_5'UTR|CDK5RAP2_uc004bkh.1_Silent_p.P35P	NM_018249	NP_060719	Q96SN8	CK5P2_HUMAN	CDK5 regulatory subunit associated protein 2	35					brain development|centrosome organization|chromosome segregation|G2/M transition of mitotic cell cycle|microtubule bundle formation|negative regulation of centriole replication|positive regulation of transcription, DNA-dependent|regulation of neuron differentiation|regulation of spindle checkpoint	cytosol|Golgi apparatus|microtubule|pericentriolar material|perinuclear region of cytoplasm|spindle pole	calmodulin binding|microtubule binding|neuronal Cdc2-like kinase binding|transcription regulatory region DNA binding			ovary(2)|lung(1)|skin(1)	4						ACCCAGCATTGGGGTTGATGC	0.448													26	43					0	0	1	0	0
C5	727	broad.mit.edu	37	9	123797169	123797169	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:123797169G>A	uc004bkv.2	-	5	526	c.496C>T	c.(496-498)CCT>TCT	p.P166S	C5_uc010mvm.1_Missense_Mutation_p.P166S|C5_uc010mvn.1_Missense_Mutation_p.P166S	NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	166					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	GATCCTTCAGGATCCTGTAAA	0.299													9	19					0	0	1	0	0
OR1L3	26735	broad.mit.edu	37	9	125437562	125437562	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:125437562G>A	uc011lzb.1	+	1	154	c.154G>A	c.(154-156)GAT>AAT	p.D52N		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TATCCACTCTGATCCTCGACT	0.433													39	152					0	0	1	0	0
C9orf119	375757	broad.mit.edu	37	9	131038500	131038500	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:131038500C>T	uc004bup.2	+	1	76	c.76C>T	c.(76-78)CGG>TGG	p.R26W	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.R26W	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	26					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						CCGCCCACCTCGGGAGAGGGG	0.672													8	42					0	0	1	0	0
SET	6418	broad.mit.edu	37	9	131455163	131455163	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:131455163C>T	uc004bvt.3	+	5	675	c.434C>T	c.(433-435)CCT>CTT	p.P145L	SET_uc004bvu.3_Missense_Mutation_p.P132L|SET_uc010myg.2_RNA|SET_uc011mbj.1_Missense_Mutation_p.P121L	NM_001122821	NP_001116293	Q01105	SET_HUMAN	SET translocation (myeloid leukemia-associated)	145					DNA replication|mRNA metabolic process|negative regulation of histone acetylation|negative regulation of neuron apoptosis|negative regulation of transcription, DNA-dependent|nucleocytoplasmic transport|nucleosome assembly|nucleosome disassembly	cytosol|endoplasmic reticulum|nucleoplasm|perinuclear region of cytoplasm|protein complex	histone binding|protein phosphatase inhibitor activity|protein phosphatase type 2A regulator activity				0		Myeloproliferative disorder(178;0.204)		GBM - Glioblastoma multiforme(294;3.1e-09)		GATGAAAATCCTTACTTTGAA	0.333			T	NUP214	AML								4	29					0	0	1	0	0
PPP2R4	5524	broad.mit.edu	37	9	131891325	131891325	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:131891325C>T	uc004bxm.1	+	5	650	c.383C>T	c.(382-384)CCA>CTA	p.P128L	PPP2R4_uc004bxl.1_Missense_Mutation_p.P93L|PPP2R4_uc011mbo.1_Missense_Mutation_p.P128L|PPP2R4_uc010myr.1_Intron|PPP2R4_uc004bxn.1_Missense_Mutation_p.P93L|PPP2R4_uc004bxo.1_Intron|PPP2R4_uc011mbp.1_Missense_Mutation_p.P64L|PPP2R4_uc011mbq.1_Intron|PPP2R4_uc010mys.1_Missense_Mutation_p.P58L	NM_178001	NP_821068	Q15257	PTPA_HUMAN	protein phosphatase 2A, regulatory subunit B'	128					ATP catabolic process|negative regulation of phosphoprotein phosphatase activity|negative regulation of protein dephosphorylation|positive regulation of apoptosis|positive regulation of phosphoprotein phosphatase activity|positive regulation of protein dephosphorylation	calcium channel complex|cytoplasm|nucleus|protein phosphatase type 2A complex|soluble fraction	ATP binding|peptidyl-prolyl cis-trans isomerase activity|protein heterodimerization activity|protein homodimerization activity|protein phosphatase 2A binding|protein phosphatase type 2A regulator activity|protein tyrosine phosphatase activator activity|receptor binding			ovary(1)|lung(1)|pancreas(1)	3		Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		GAGACTCCTCCAGTGGACCAG	0.547													13	47					0	0	1	0	0
SEC16A	9919	broad.mit.edu	37	9	139371256	139371256	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr9:139371256G>A	uc004chx.2	-	3	1121	c.812C>T	c.(811-813)CCC>CTC	p.P271L	SEC16A_uc004chv.3_5'Flank|SEC16A_uc004chw.2_Missense_Mutation_p.P271L|SEC16A_uc010nbn.2_Missense_Mutation_p.P271L|SEC16A_uc010nbo.1_Missense_Mutation_p.P271L	NM_014866	NP_055681	O15027	SC16A_HUMAN	SEC16 homolog A	93					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane					0		Myeloproliferative disorder(178;0.0511)		Epithelial(140;2.9e-06)|OV - Ovarian serous cystadenocarcinoma(145;5.88e-06)		GGCTGCTGGGGGAGCCACCAG	0.597													6	25					0	0	1	0	0
ARSH	347527	broad.mit.edu	37	X	2951169	2951169	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:2951169G>A	uc011mhj.1	+	9	1432	c.1432G>A	c.(1432-1434)GAC>AAC	p.D478N		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	478						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				AACCTACCACGACCCACCACT	0.473													31	54					0	0	1	0	0
EIF1AX	1964	broad.mit.edu	37	X	20156729	20156729	+	Missense_Mutation	SNP	T	C	C			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:20156729T>C	uc004czt.2	-	2	236	c.28A>G	c.(28-30)AAA>GAA	p.K10E	SCARNA9L_uc010nfp.2_5'Flank	NM_001412	NP_001403	P47813	IF1AX_HUMAN	X-linked eukaryotic translation initiation	10						cytosol	translation initiation factor activity			ovary(1)	1						CGTCTGTTTTTACCTCCTTTA	0.308													31	70					0	0	1	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766345	27766345	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:27766345G>A	uc011mjy.1	+	1	1420	c.1333G>A	c.(1333-1335)GAT>AAT	p.D445N		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						CAATGATGACGATATTTACCT	0.423													14	44					0	0	1	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820590	35820590	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:35820590G>A	uc010ngt.1	+	2	556	c.277G>A	c.(277-279)GAA>AAA	p.E93K		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	93										lung(3)|ovary(2)|breast(1)|skin(1)	7						TCAAGAAGAGGAAGATAGTCC	0.493													10	11					0	0	1	0	0
CXorf59	286464	broad.mit.edu	37	X	36162748	36162748	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:36162748C>T	uc004ddk.1	+	11	1517	c.1331C>T	c.(1330-1332)TCA>TTA	p.S444L		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	444						integral to membrane				central_nervous_system(1)	1						gatatgccctcagtgtgggtt	0													19	35					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37026557	37026557	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:37026557C>T	uc004ddl.1	+	1	88	c.74C>T	c.(73-75)CCG>CTG	p.P25L		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	25										ovary(3)	3						TGTGACAAACCGCCTTCCAAG	0.647													5	24					0	0	1	0	0
CLCN5	1184	broad.mit.edu	37	X	49851137	49851137	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:49851137C>T	uc004dos.1	+	8	1205	c.957C>T	c.(955-957)CTC>CTT	p.L319L	CLCN5_uc004dor.1_Silent_p.L389L|CLCN5_uc004doq.1_Silent_p.L389L|CLCN5_uc004dot.1_Silent_p.L319L	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	319	Helical; (By similarity).				excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					TCTTTGAGCTCGTGCCATTCA	0.512													18	54					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50089728	50089728	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:50089728G>A	uc004dox.3	+	10	4030	c.3732G>A	c.(3730-3732)ATG>ATA	p.M1244I	CCNB3_uc004doy.2_Missense_Mutation_p.M1244I|CCNB3_uc004doz.2_Missense_Mutation_p.M140I|CCNB3_uc010njq.2_Missense_Mutation_p.M136I|CCNB3_uc004dpa.2_Missense_Mutation_p.M83I	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	1244					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TACTCAGCATGGAAATCAACA	0.458													15	78					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53563559	53563559	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:53563559G>A	uc004dsp.2	-	79	12609	c.12207C>T	c.(12205-12207)ATC>ATT	p.I4069I	HUWE1_uc004dsn.2_Silent_p.I2877I	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	4069	HECT.				base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TCTCTCGAGAGATGATCATAT	0.483													28	51					0	0	1	0	0
XIST	7503	broad.mit.edu	37	X	73066348	73066348	+	RNA	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:73066348G>A	uc004ebm.1	-	1		c.6241C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						ATTGCAAAAGGGGTCGGAGAG	0.453													34	83					0	0	1	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77912994	77912994	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:77912994G>A	uc004edc.1	-	2	1220	c.924C>T	c.(922-924)TTC>TTT	p.F308F		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	308							nucleic acid binding|zinc ion binding			ovary(1)	1						GCACAGGTATGAAACTTTCAC	0.478													5	16					0	0	1	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011435	105011435	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:105011435C>T	uc004elz.1	+	11	2598	c.1842C>T	c.(1840-1842)ATC>ATT	p.I614I		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	614	Cytoplasmic (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						CAATGCAAATCAGGCACTGTT	0.488													24	79					0	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105193629	105193629	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:105193629G>A	uc004emd.2	+	27	4719	c.4416G>A	c.(4414-4416)ATG>ATA	p.M1472I	NRK_uc011msi.1_Missense_Mutation_p.M53I	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1472	CNH.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GAATTGGCATGATGCTCACCT	0.373										HNSCC(51;0.14)			14	41					0	0	1	0	0
RNF128	79589	broad.mit.edu	37	X	106034423	106034423	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:106034423G>A	uc004eml.2	+	6	1362	c.1112G>A	c.(1111-1113)GGA>GAA	p.G371E	RNF128_uc004emk.2_Missense_Mutation_p.G345E	NM_194463	NP_919445	Q8TEB7	RN128_HUMAN	ring finger protein 128 isoform 1	371						endomembrane system|integral to membrane|perinuclear region of cytoplasm	zinc ion binding			ovary(1)|central_nervous_system(1)	2						TCAGTACAGGGAACAGATGAA	0.458													47	176					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107838825	107838825	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:107838825C>T	uc004enz.1	+	22	1712	c.1510C>T	c.(1510-1512)CCT>TCT	p.P504S	COL4A5_uc011mso.1_Missense_Mutation_p.P504S|COL4A5_uc004eob.1_Missense_Mutation_p.P112S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	504	Triple-helical region.		Missing (in APSX; juvenile type).		axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						TCTCCCAGGTCCTCCAGGTAA	0.403									Alport_syndrome_with_Diffuse_Leiomyomatosis				16	53					0	0	1	0	0
IL13RA2	3598	broad.mit.edu	37	X	114251824	114251824	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:114251824G>A	uc004epx.2	-	2	134	c.9C>T	c.(7-9)TTC>TTT	p.F3F	IL13RA2_uc010nqd.1_Silent_p.F3F	NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	3						extracellular space|integral to membrane|soluble fraction	cytokine receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						CCAAGCAAACGAAAGCCATTT	0.328													18	63					0	0	1	0	0
BCORL1	63035	broad.mit.edu	37	X	129149233	129149233	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:129149233C>T	uc004evb.1	+	4	2599	c.2485C>T	c.(2485-2487)CTG>TTG	p.L829L	BCORL1_uc010nrd.1_Silent_p.L731L	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	829					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						CACCCAGGTCCTGCCTGTTGG	0.602													26	81					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130410929	130410929	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:130410929C>T	uc004ewd.2	-	14	2830	c.2592G>A	c.(2590-2592)GTG>GTA	p.V864V	IGSF1_uc004ewe.3_Silent_p.V858V|IGSF1_uc004ewf.2_Silent_p.V844V	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	864	Extracellular (Potential).|Ig-like C2-type 8.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CCACGAGCTCCACAGGGTCGC	0.537													57	99					0	0	1	0	0
GPC4	2239	broad.mit.edu	37	X	132439895	132439895	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:132439895G>A	uc004exc.1	-	6	1272	c.1060C>T	c.(1060-1062)CGT>TGT	p.R354C	GPC4_uc011mvg.1_Missense_Mutation_p.R284C	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	354					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GAGATGGAACGAGAAATTCGT	0.562													82	172					0	0	1	0	0
GPR112	139378	broad.mit.edu	37	X	135431105	135431105	+	Missense_Mutation	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:135431105C>T	uc004ezu.1	+	6	5531	c.5240C>T	c.(5239-5241)CCT>CTT	p.P1747L	GPR112_uc010nsb.1_Missense_Mutation_p.P1542L|GPR112_uc010nsc.1_Missense_Mutation_p.P1514L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1747	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATCACTGTTCCTGAAAATATG	0.428													51	103					0	0	1	0	0
SLITRK4	139065	broad.mit.edu	37	X	142716798	142716798	+	Silent	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:142716798G>A	uc004fbx.2	-	2	2503	c.2127C>T	c.(2125-2127)TTC>TTT	p.F709F	SLITRK4_uc004fby.2_Silent_p.F709F	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	709	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTGAAAACATGAACCCAGTTT	0.408													42	87					0	0	1	0	0
BCAP31	10134	broad.mit.edu	37	X	152981046	152981046	+	Missense_Mutation	SNP	G	A	A			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:152981046G>A	uc011myz.1	-	4	448	c.292C>T	c.(292-294)CGT>TGT	p.R98C	BCAP31_uc011myy.1_Missense_Mutation_p.R10C|BCAP31_uc004fid.2_Missense_Mutation_p.R165C|BCAP31_uc011mza.1_Missense_Mutation_p.R98C|BCAP31_uc004fie.2_Missense_Mutation_p.R98C	NM_001139441	NP_001132913	P51572	BAP31_HUMAN	B-cell receptor-associated protein 31 isoform b	98	Lumenal (Potential).				cellular component disassembly involved in apoptosis|immune response|intracellular protein transport|vesicle-mediated transport	cytosol|endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|integral to plasma membrane	receptor binding				0	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CTCTGGGCACGGAAAAGCTTC	0.547													43	72					0	0	1	0	0
FLNA	2316	broad.mit.edu	37	X	153594930	153594930	+	Silent	SNP	C	T	T			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chrX:153594930C>T	uc004fkk.2	-	7	1314	c.1065G>A	c.(1063-1065)AAG>AAA	p.K355K	FLNA_uc010nuu.1_Silent_p.K355K	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	355	Filamin 1.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					AAGGGCTCACCTTATGAGTCC	0.627													20	45					0	0	1	0	0
OR2T35	403244	broad.mit.edu	37	1	248801602	248801603	+	Frame_Shift_Ins	INS	-	CA	CA			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr1:248801602_248801603insCA	uc001ies.1	-	1	957_958	c.957_958insTG	c.(955-960)GTGATCfs	p.V319fs		NM_001001827	NP_001001827	Q8NGX2	O2T35_HUMAN	olfactory receptor, family 2, subfamily T,	319_320	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;2.04e-05)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCCTTCCTGATCACAGTCGCCA	0.545													3	4	---	---	---	---					
CACNA1C	775	broad.mit.edu	37	12	2778120	2778127	+	Frame_Shift_Del	DEL	CCTCTGAA	-	-			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:2778120_2778127delCCTCTGAA	uc009zdu.1	+	40	5102_5109	c.4789_4796delCCTCTGAA	c.(4789-4797)CCTCTGAACfs	p.P1597fs	CACNA1C_uc009zdv.1_Frame_Shift_Del_p.P1546fs|CACNA1C_uc001qkb.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qkc.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qke.2_Frame_Shift_Del_p.P1538fs|CACNA1C_uc001qkf.2_Frame_Shift_Del_p.P1538fs|CACNA1C_uc001qjz.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qkd.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qkg.2_Frame_Shift_Del_p.P1536fs|CACNA1C_uc009zdw.1_Frame_Shift_Del_p.P1571fs|CACNA1C_uc001qkh.2_Frame_Shift_Del_p.P1538fs|CACNA1C_uc001qkl.2_Frame_Shift_Del_p.P1597fs|CACNA1C_uc001qkn.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qko.2_Frame_Shift_Del_p.P1569fs|CACNA1C_uc001qkp.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qkr.2_Frame_Shift_Del_p.P1566fs|CACNA1C_uc001qku.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qkq.2_Frame_Shift_Del_p.P1577fs|CACNA1C_uc001qks.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qkt.2_Frame_Shift_Del_p.P1549fs|CACNA1C_uc001qki.1_Frame_Shift_Del_p.P1285fs|CACNA1C_uc001qkj.1_Frame_Shift_Del_p.P1285fs|CACNA1C_uc001qkk.1_Frame_Shift_Del_p.P1285fs|CACNA1C_uc001qkm.1_Frame_Shift_Del_p.P1274fs|CACNA1C_uc010sea.1_Frame_Shift_Del_p.P240fs	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	1597_1599	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CATGAACATGCCTCTGAACAGCGACGGG	0.582													18	120	---	---	---	---					
UNG	7374	broad.mit.edu	37	12	109536377	109536378	+	Frame_Shift_Ins	INS	-	GT	GT			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr12:109536377_109536378insGT	uc001tnz.1	+	2	343_344	c.273_274insGT	c.(271-276)CCCGTGfs	p.P91fs	UNG_uc001toa.1_Frame_Shift_Ins_p.P82fs	NM_080911	NP_550433	P13051	UNG_HUMAN	uracil-DNA glycosylase isoform UNG2	91_92					base-excision repair|interspecies interaction between organisms	mitochondrion|nucleus	protein binding|uracil DNA N-glycosylase activity			lung(1)|central_nervous_system(1)	2						GCAACGTGCCCGTGGGCTTTGG	0.594								BER_DNA_glycosylases	Immune_Deficiency_with_Hyper-IgM				15	105	---	---	---	---					
GRLF1	2909	broad.mit.edu	37	19	47423663	47423665	+	In_Frame_Del	DEL	GTT	-	-			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr19:47423663_47423665delGTT	uc010ekv.2	+	1	1731_1733	c.1731_1733delGTT	c.(1729-1734)CGGTTT>CGT	p.F578del		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	578					axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		TTAGTTCTCGGTTTATCCGGCCG	0.468													14	137	---	---	---	---					
BRD1	23774	broad.mit.edu	37	22	50187690	50187690	+	Frame_Shift_Del	DEL	C	-	-			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr22:50187690delC	uc003biv.2	-	6	2838	c.2351delG	c.(2350-2352)GGCfs	p.G784fs	BRD1_uc011arf.1_Frame_Shift_Del_p.G379fs|BRD1_uc011arg.1_Frame_Shift_Del_p.G833fs|BRD1_uc011arh.1_Frame_Shift_Del_p.G784fs|BRD1_uc003biu.3_Frame_Shift_Del_p.G784fs	NM_014577	NP_055392	O95696	BRD1_HUMAN	bromodomain containing protein 1	784					histone H3 acetylation	MOZ/MORF histone acetyltransferase complex	zinc ion binding			pancreas(1)	1		all_cancers(38;6.11e-10)|all_epithelial(38;8.06e-09)|all_lung(38;6.64e-05)|Lung NSC(38;0.0011)|Breast(42;0.00235)|Ovarian(80;0.0139)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0369)|BRCA - Breast invasive adenocarcinoma(115;0.21)		ACCTTCCTCGCCCGCCTCCGG	0.687													12	48	---	---	---	---					
IDO2	169355	broad.mit.edu	37	8	39847305	39847306	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-GF-A3OT-06A-23D-A23B-08	TCGA-GF-A3OT-10A-01D-A23B-08									Somatic	Phase_I	Capture				Illumina GAIIx	c69d54bb-f02f-4d3b-a943-d78f533126d1	fd7fa04c-bcad-4e08-9fe9-c38b3ee56ab6	g.chr8:39847305_39847306delGC	uc010lwy.1	+	8	896_897	c.654_655delGC	c.(652-657)CAGCGAfs	p.Q218fs	IDO2_uc003xno.1_RNA|IDO2_uc010lwz.1_5'UTR|IDO2_uc003xnp.1_5'UTR	NM_194294	NP_919270	Q6ZQW0	I23O2_HUMAN	indoleamine-pyrrole 2,3 dioxygenase-like 1	205_206					tryptophan catabolic process to kynurenine	cytosol	heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			ovary(2)	2						AAGCCCTGCAGCGACTGAGACT	0.535											OREG0018729	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	14	---	---	---	---					
