Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16975045	16975045	+	RNA	SNP	G	A	A	rs55763726	by1000genomes	TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:16975045G>A	uc010och.1	+	7		c.1505G>A			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCTCCGAACCGCATGCACAAC	0.587													6	77					0	0	0.000274275	0	0
YBX1	4904	broad.mit.edu	37	1	43166649	43166649	+	Missense_Mutation	SNP	C	T	T	rs141968223		TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:43166649C>T	uc001chs.2	+	7	1109	c.938C>T	c.(937-939)TCG>TTG	p.S313L		NM_004559	NP_004550	P67809	YBOX1_HUMAN	nuclease sensitive element binding protein 1	313					CRD-mediated mRNA stabilization|negative regulation of transcription, DNA-dependent|nuclear mRNA splicing, via spliceosome|positive regulation of cell division|transcription from RNA polymerase II promoter	CRD-mediated mRNA stability complex|extracellular region|histone pre-mRNA 3'end processing complex|nucleoplasm|stress granule|U12-type spliceosomal complex	double-stranded DNA binding|protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|single-stranded DNA binding			ovary(4)|upper_aerodigestive_tract(1)	5	Ovarian(52;0.00744)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GCTGAGAATTCGTCCGCTCCC	0.552													19	52					0	0	0.00152264	0	0
CELSR2	1952	broad.mit.edu	37	1	109792751	109792751	+	Missense_Mutation	SNP	T	C	C	rs117206433	by1000genomes	TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:109792751T>C	uc001dxa.3	+	1	111	c.50T>C	c.(49-51)CTG>CCG	p.L17P		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	17					dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		ccgccgccgctgctgctgctg	0.567													3	34					0	0	6.4e-05	0	0
NBPF9	400818	broad.mit.edu	37	1	144823897	144823897	+	Silent	SNP	T	C	C			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:144823897T>C	uc009wig.1	+	17	2014	c.1938T>C	c.(1936-1938)TGT>TGC	p.C646C	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Intron|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Silent_p.C447C|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.C306C	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	646	NBPF 4.					cytoplasm					0						CTTCAGGTTGTCTTGAACTGA	0.488													3	75					0	0	0.00307968	0	0
IQGAP3	128239	broad.mit.edu	37	1	156531700	156531700	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:156531700C>T	uc001fpf.2	-	10	1046	c.971G>A	c.(970-972)CGA>CAA	p.R324Q	IQGAP3_uc009wsb.1_Missense_Mutation_p.R281Q	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	324					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCTCACCCCTCGCAGGGCCAG	0.562													9	28					0	0	0.000673444	0	0
FAM5C	339479	broad.mit.edu	37	1	190067796	190067796	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:190067796C>A	uc001gse.1	-	8	1885	c.1653G>T	c.(1651-1653)TTG>TTT	p.L551F	FAM5C_uc010pot.1_Missense_Mutation_p.L449F	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	551						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					AAGAGAGACCCAAAATCATAT	0.478													19	66					5.3912e-06	5.32119e-05	0.00074312	1	0
PRELP	5549	broad.mit.edu	37	1	203453021	203453021	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:203453021C>T	uc001gzs.2	+	2	909	c.709C>T	c.(709-711)CCG>TCG	p.P237S	PRELP_uc001gzt.2_Missense_Mutation_p.P237S	NM_002725	NP_002716	P51888	PRELP_HUMAN	proline arginine-rich end leucine-rich repeat	237	LRR 7.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(1)|central_nervous_system(1)|pancreas(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.109)			GAGAAAGATGCCGCCCAGGGT	0.552													5	149					0	0	0.00116845	0	0
NID1	4811	broad.mit.edu	37	1	236143148	236143148	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:236143148C>A	uc001hxo.2	-	18	3585	c.3483G>T	c.(3481-3483)AAG>AAT	p.K1161N	NID1_uc009xgd.2_Missense_Mutation_p.K1028N|NID1_uc009xgc.2_Missense_Mutation_p.K242N	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	1161	LDL-receptor class B 4.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	AATACAGATTCTTCCCGTAGC	0.602													14	42					1.05317e-09	1.09645e-08	0.00244969	1	0
BMS1	9790	broad.mit.edu	37	10	43317546	43317546	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr10:43317546G>A	uc001jaj.2	+	19	3404	c.3046G>A	c.(3046-3048)GAT>AAT	p.D1016N		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	1016					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						AGTTGTCCTTGATCTGGATAA	0.308													25	57					0	0	0.00106085	0	0
ARID5B	84159	broad.mit.edu	37	10	63850684	63850684	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr10:63850684C>T	uc001jlt.1	+	10	1488	c.1462C>T	c.(1462-1464)CTC>TTC	p.L488F		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	488					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					CCCTGAGCCTCTCCCAGCAGC	0.428													22	25					0	0	0.00332997	0	0
ZNF408	79797	broad.mit.edu	37	11	46726143	46726143	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr11:46726143G>C	uc001nde.1	+	5	1123	c.893G>C	c.(892-894)GGC>GCC	p.G298A	ZNF408_uc010rgw.1_Missense_Mutation_p.G290A	NM_024741	NP_079017	Q9H9D4	ZN408_HUMAN	zinc finger protein 408	298					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding				0						TCTGCCAGGGGCACCCAGCCG	0.617													16	24					0	0	0.00074312	0	0
DDIT3	1649	broad.mit.edu	37	12	57911175	57911175	+	Silent	SNP	T	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr12:57911175T>G	uc001soi.2	-	3	195	c.15A>C	c.(13-15)TCA>TCC	p.S5S	MARS_uc001sof.1_RNA|DDIT3_uc009zps.2_Silent_p.S28S|DDIT3_uc009zpt.2_Silent_p.S28S	NM_004083	NP_004074	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	5					cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		FUS/DDIT3(623)|EWSR1/DDIT3(43)	soft_tissue(666)|large_intestine(1)|central_nervous_system(1)|lung(1)|skin(1)|ovary(1)	671						AGAAAGGCAATGACTCAGCTG	0.517			T	FUS	liposarcoma								8	37					0	0	0.000274275	0	0
LOC284232	284232	broad.mit.edu	37	13	19415641	19415641	+	RNA	SNP	A	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr13:19415641A>T	uc010tcj.1	-	1		c.30469T>A				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						aaaaaaaaaaaaacccaaaca	0.169													5	28					0	0	0.000602214	0	0
CMA1	1215	broad.mit.edu	37	14	24976701	24976701	+	Missense_Mutation	SNP	C	T	T	rs140753864		TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr14:24976701C>T	uc001wpp.1	-	2	100	c.70G>A	c.(70-72)GGG>AGG	p.G24R	CMA1_uc010alx.1_Intron	NM_001836	NP_001827	P23946	CMA1_HUMAN	chymase 1, mast cell preproprotein	24	Peptidase S1.				interleukin-1 beta biosynthetic process|proteolysis	extracellular region	serine-type endopeptidase activity				0				GBM - Glioblastoma multiforme(265;0.0271)		TCTGTGCCCCCGATGATCTCC	0.498													28	46					0	0	0.001512	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102457883	102457883	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr14:102457883G>C	uc001yks.2	+	11	3052	c.2888G>C	c.(2887-2889)AGA>ACA	p.R963T		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	963	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						CATGAGCTAAGAATAACCAAT	0.308													20	29					0	0	0.000878237	0	0
ADAM6	8755	broad.mit.edu	37	14	107062359	107062359	+	RNA	SNP	G	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr14:107062359G>T	uc010tyt.1	-	131		c.6236C>A								Parts of antibodies, mostly variable regions.												0						AGACAGCGCAGATGAGGGACA	0.607													4	21					5.9392e-07	6.09972e-06	0.00116845	1	0
Unknown	0	broad.mit.edu	37	15	20362825	20362825	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr15:20362825G>T	uc001yte.1	+	1	138	c.87G>T	c.(85-87)TTG>TTT	p.L29F						SubName: Full=Putative uncharacterized protein ENSP00000349734;																		TGGGTGGCTTGGGCAACAGCG	0.498													9	61					9.31168e-06	9.07292e-05	0.00185496	1	0
RYR3	6263	broad.mit.edu	37	15	33962623	33962623	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr15:33962623T>G	uc001zhi.2	+	38	5796	c.5726T>G	c.(5725-5727)GTT>GGT	p.V1909G	RYR3_uc010bar.2_Missense_Mutation_p.V1909G	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1909	4 X approximate repeats.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TTGCTAGGGGTTCCTTTggaa	0.398													3	7					0	0	0.000442599	0	0
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr15:102515299G>A	uc002cdi.2	+	9	1943	c.523G>A	c.(523-525)GGC>AGC	p.G175S	WASH3P_uc002cdl.2_Missense_Mutation_p.G175S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Missense_Mutation_p.G175S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_RNA	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						TGGGGGCATCGGCAAGGCCAA	0.652													4	7					0	0	0.00024832	0	0
NOMO2	283820	broad.mit.edu	37	16	18549973	18549973	+	Silent	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:18549973G>A	uc002dfe.2	-	11	1167	c.1095C>T	c.(1093-1095)TTC>TTT	p.F365F	NOMO2_uc002dff.2_Silent_p.F365F|NOMO2_uc010bvx.2_Silent_p.F198F	NM_001004060	NP_001004060	Q5JPE7	NOMO2_HUMAN	nodal modulator 2 isoform 1	365	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			skin(1)	1						TCTCAAGGCGGAATGAGCCAT	0.403													41	30					0	0	0.00361006	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67860594	67860594	+	Splice_Site	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:67860594G>A	uc002euj.2	+	12	1634	c.1240_splice	c.e12-1	p.K414_splice	TSNAXIP1_uc010vjz.1_Splice_Site_p.K291_splice|TSNAXIP1_uc002euf.3_Splice_Site_p.K147_splice|TSNAXIP1_uc010vka.1_Splice_Site_p.K468_splice|TSNAXIP1_uc010vkb.1_Splice_Site_p.K399_splice|TSNAXIP1_uc002eug.3_Splice_Site_p.K122_splice|TSNAXIP1_uc002euh.3_Splice_Site_p.K122_splice|TSNAXIP1_uc002eui.3_Splice_Site_p.K122_splice|TSNAXIP1_uc002euk.2_Splice_Site_p.K147_splice	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein						cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		CGATCCCGCAGAAAGAGACGT	0.498													12	90					0	0	0.00185496	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67860932	67860932	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:67860932G>A	uc002euj.2	+	13	1853	c.1459G>A	c.(1459-1461)GCT>ACT	p.A487T	TSNAXIP1_uc010vjz.1_Missense_Mutation_p.A364T|TSNAXIP1_uc002euf.3_Missense_Mutation_p.A220T|TSNAXIP1_uc010vka.1_Missense_Mutation_p.A541T|TSNAXIP1_uc010vkb.1_Missense_Mutation_p.A472T|TSNAXIP1_uc002eug.3_Missense_Mutation_p.A195T|TSNAXIP1_uc002euh.3_Missense_Mutation_p.A195T|TSNAXIP1_uc002eui.3_Missense_Mutation_p.A195T|TSNAXIP1_uc002euk.2_Missense_Mutation_p.A220T	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	487					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		GATGACAAATGCTGACAGTCA	0.507													10	75					0	0	0.000442599	0	0
TSNAXIP1	55815	broad.mit.edu	37	16	67861433	67861433	+	Nonsense_Mutation	SNP	G	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:67861433G>T	uc002euj.2	+	15	2081	c.1687G>T	c.(1687-1689)GAG>TAG	p.E563*	TSNAXIP1_uc010vjz.1_Nonsense_Mutation_p.E440*|TSNAXIP1_uc002euf.3_Nonsense_Mutation_p.E296*|TSNAXIP1_uc010vka.1_Nonsense_Mutation_p.E617*|TSNAXIP1_uc010vkb.1_Nonsense_Mutation_p.E548*|TSNAXIP1_uc002eug.3_Nonsense_Mutation_p.E271*|TSNAXIP1_uc002euh.3_Nonsense_Mutation_p.E271*|TSNAXIP1_uc002eui.3_Nonsense_Mutation_p.E271*|TSNAXIP1_uc002euk.2_Nonsense_Mutation_p.E296*	NM_018430	NP_060900	Q2TAA8	TXIP1_HUMAN	translin-associated factor X interacting protein	563					cell differentiation|multicellular organismal development|spermatogenesis	perinuclear region of cytoplasm					0		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00432)|Epithelial(162;0.0192)|all cancers(182;0.125)		ATACATGGATGAGAAGGACGA	0.567													22	130					3.7963e-18	4.1217e-17	0.00332997	1	0
SLC12A4	6560	broad.mit.edu	37	16	67984340	67984340	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:67984340G>T	uc002euz.2	-	12	1652	c.1511C>A	c.(1510-1512)CCC>CAC	p.P504H	SLC12A4_uc010ceu.2_Missense_Mutation_p.P498H|SLC12A4_uc010vkh.1_Missense_Mutation_p.P473H|SLC12A4_uc010vki.1_Missense_Mutation_p.P504H|SLC12A4_uc010vkj.1_Missense_Mutation_p.P506H|SLC12A4_uc002eva.2_Missense_Mutation_p.P504H|SLC12A4_uc002evb.2_RNA	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	504	Helical; (Potential).				cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GATGACCCAGGGTGAAGGCCA	0.617													5	46					2.0095e-06	2.03629e-05	0.00198382	1	0
DPEP2	64174	broad.mit.edu	37	16	68024759	68024759	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:68024759C>A	uc010cey.2	-	6	1038	c.874G>T	c.(874-876)GCT>TCT	p.A292S	DPEP2_uc002evd.3_Missense_Mutation_p.A292S|DPEP2_uc002eve.2_Missense_Mutation_p.A292S|DPEP2_uc002evf.2_RNA	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	292					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		ACATTCCGAGCACTGTTGCAC	0.552													36	186					3.33393e-15	3.56872e-14	0.000953801	1	0
DPEP2	64174	broad.mit.edu	37	16	68024861	68024861	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:68024861C>T	uc010cey.2	-	6	936	c.772G>A	c.(772-774)GAC>AAC	p.D258N	DPEP2_uc002evd.3_Missense_Mutation_p.D258N|DPEP2_uc002eve.2_Missense_Mutation_p.D258N|DPEP2_uc002evf.2_Intron	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	258					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		TGGGATAAGTCTACCATCATG	0.547													10	112					0	0	0.00136819	0	0
DPEP2	64174	broad.mit.edu	37	16	68024883	68024883	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:68024883C>T	uc010cey.2	-	6	914	c.750G>A	c.(748-750)ATG>ATA	p.M250I	DPEP2_uc002evd.3_Missense_Mutation_p.M250I|DPEP2_uc002eve.2_Missense_Mutation_p.M250I|DPEP2_uc002evf.2_Intron	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	250					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		CCAGGCGGTTCATTTCTGCCA	0.532													7	96					0	0	0.00307968	0	0
DPEP2	64174	broad.mit.edu	37	16	68024897	68024897	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:68024897C>G	uc010cey.2	-	6	900	c.736G>C	c.(736-738)GTG>CTG	p.V246L	DPEP2_uc002evd.3_Missense_Mutation_p.V246L|DPEP2_uc002eve.2_Missense_Mutation_p.V246L|DPEP2_uc002evf.2_Intron	NM_022355	NP_071750	Q9H4A9	DPEP2_HUMAN	dipeptidase 2 precursor	246					hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|proteolysis	anchored to membrane|plasma membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity			skin(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0489)|all cancers(182;0.239)		TCTGCCACCACCTTCTGCAGG	0.522													6	88					0	0	0.00198382	0	0
WWP2	11060	broad.mit.edu	37	16	69874163	69874163	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:69874163G>A	uc002exu.1	+	6	564	c.475G>A	c.(475-477)GAT>AAT	p.D159N	WWP2_uc002ext.2_Missense_Mutation_p.D159N|WWP2_uc002exv.1_Missense_Mutation_p.D159N|WWP2_uc010vlm.1_Missense_Mutation_p.D43N	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	159					entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						TGCCCTGACAGATGGTGAGTG	0.597													10	78					0	0	0.000673444	0	0
CTU2	348180	broad.mit.edu	37	16	88781079	88781079	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:88781079C>T	uc002flm.2	+	12	1334	c.1286C>T	c.(1285-1287)CCC>CTC	p.P429L	CTU2_uc002fln.2_Missense_Mutation_p.P429L|CTU2_uc010chz.2_Missense_Mutation_p.P500L|CTU2_uc010cia.2_Missense_Mutation_p.P342L	NM_001012759	NP_001012777	Q2VPK5	CTU2_HUMAN	cytoplasmic tRNA 2-thiolation protein 2 isoform	429					tRNA thio-modification|tRNA wobble uridine modification	cytoplasm|protein complex|soluble fraction	protein binding			skin(1)	1						ACCCGGACACCCCCGGGGCCC	0.687													3	14					0	0	0.00024832	0	0
CTU2	348180	broad.mit.edu	37	16	88781275	88781275	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:88781275C>T	uc002flm.2	+	13	1408	c.1360C>T	c.(1360-1362)CCC>TCC	p.P454S	CTU2_uc002fln.2_Missense_Mutation_p.P454S|CTU2_uc010chz.2_Missense_Mutation_p.P525S|CTU2_uc010cia.2_Missense_Mutation_p.P367S	NM_001012759	NP_001012777	Q2VPK5	CTU2_HUMAN	cytoplasmic tRNA 2-thiolation protein 2 isoform	454					tRNA thio-modification|tRNA wobble uridine modification	cytoplasm|protein complex|soluble fraction	protein binding			skin(1)	1						CAGGGAGGACCCCCAAGCCTG	0.652													6	32					0	0	0.00198382	0	0
PIK3R5	23533	broad.mit.edu	37	17	8785145	8785145	+	Silent	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr17:8785145G>A	uc002glt.2	-	16	2326	c.2259C>T	c.(2257-2259)TCC>TCT	p.S753S	PIK3R5_uc010vuz.1_Silent_p.S753S|PIK3R5_uc002glu.3_Silent_p.S367S	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	753	Interaction with G beta gamma proteins (By similarity).				platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						TGAGGTTCACGGAGGTACAGA	0.622													4	15					0	0	0.000602214	0	0
CCDC56	28958	broad.mit.edu	37	17	40947833	40947833	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr17:40947833T>G	uc010wgz.1	-	3	702	c.425A>C	c.(424-426)CAG>CCG	p.Q142P	WNK4_uc002ibj.2_Silent_p.A1071A|WNK4_uc010wgx.1_Silent_p.A735A			Q9Y2R0	CCD56_HUMAN	SubName: Full=cDNA FLJ50764;	Error:Variant_position_missing_in_Q9Y2R0_after_alignment						integral to membrane					0		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0741)		AAGCTCTGGCTGAGAGCGACC	0.607													16	25					0	0	0.00074312	0	0
COX11	1353	broad.mit.edu	37	17	53045939	53045939	+	Silent	SNP	C	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr17:53045939C>A	uc010wng.1	-	1	126	c.69G>T	c.(67-69)GGG>GGT	p.G23G	STXBP4_uc010dcc.1_5'Flank|STXBP4_uc002iuf.1_5'Flank|STXBP4_uc010dcd.1_5'Flank|COX11_uc010wne.1_RNA|COX11_uc010wnf.1_RNA|COX11_uc002iue.2_RNA|COX11_uc010wnh.1_Silent_p.G23G	NM_004375	NP_004366	Q9Y6N1	COX11_HUMAN	COX11 homolog, cytochrome c oxidase assembly	23					respiratory chain complex IV assembly|respiratory gaseous exchange	integral to membrane|mitochondrial inner membrane	copper ion binding|cytochrome-c oxidase activity|electron carrier activity			ovary(1)	1						TGGTTGGAGACCCAGGGTGGA	0.612													20	70					3.10358e-05	0.000298572	0.00229938	1	0
C18orf55	29090	broad.mit.edu	37	18	71816215	71816215	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr18:71816215C>T	uc010dqr.1	+	1	470	c.172C>T	c.(172-174)CTT>TTT	p.L58F	FBXO15_uc002lle.2_5'Flank|FBXO15_uc002llf.2_5'Flank	NM_014177	NP_054896	Q9BVV7	TI21L_HUMAN	hypothetical protein LOC29090 precursor	58					protein transport|transmembrane transport	integral to membrane|mitochondrial membrane					0		Esophageal squamous(42;0.0746)|Prostate(75;0.157)|Melanoma(33;0.211)				TAGATGTATTCTTGGAGTCAC	0.498													46	104					0	0	0.00361006	0	0
ARRDC5	645432	broad.mit.edu	37	19	4902820	4902820	+	Silent	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr19:4902820C>T	uc002mbm.2	-	1	60	c.60G>A	c.(58-60)TCG>TCA	p.S20S		NM_001080523	NP_001073992	A6NEK1	ARRD5_HUMAN	arrestin domain containing 5	20					signal transduction						0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0257)		CTAATTCGATCGACTTCACCA	0.547													35	67					0	0	0.00327116	0	0
ACER1	125981	broad.mit.edu	37	19	6307274	6307274	+	Silent	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr19:6307274C>T	uc002mel.2	-	5	594	c.516G>A	c.(514-516)CTG>CTA	p.L172L		NM_133492	NP_597999	Q8TDN7	ACER1_HUMAN	alkaline ceramidase 1	172	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	ceramidase activity				0						AGACCTCAATCAGGTGCCGAA	0.562													19	30					0	0	0.00121646	0	0
ZNF208	7757	broad.mit.edu	37	19	22156977	22156977	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr19:22156977A>T	uc002nqp.2	-	4	1008	c.859T>A	c.(859-861)TGT>AGT	p.C287S	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CATTCTTCACATTTGTTGGGT	0.383													14	29					0	0	0.00244969	0	0
RBKS	64080	broad.mit.edu	37	2	28050600	28050600	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr2:28050600G>A	uc002rlo.1	-	7	640	c.629C>T	c.(628-630)ACG>ATG	p.T210M	RBKS_uc010ezi.1_Missense_Mutation_p.T143M|RBKS_uc010ymg.1_Missense_Mutation_p.T210M	NM_022128	NP_071411	Q9H477	RBSK_HUMAN	ribokinase	210					D-ribose metabolic process		ATP binding|ribokinase activity			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(172;0.155)					GCTGCCCACCGTGAGGCCAGT	0.478													9	6					0	0	0.000274275	0	0
ANKRD44	91526	broad.mit.edu	37	2	197986223	197986223	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr2:197986223A>G	uc002uuc.2	-	8	906	c.739T>C	c.(739-741)TGC>CGC	p.C247R	ANKRD44_uc002utz.3_5'UTR|ANKRD44_uc002uua.1_Missense_Mutation_p.C222R|ANKRD44_uc002uub.2_Missense_Mutation_p.C247R|ANKRD44_uc010zgw.1_Missense_Mutation_p.C175R	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	247	ANK 8.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			CCATTGTAGCAGGCGATGTGA	0.438													16	16					0	0	0.00074312	0	0
UGT1A3	54659	broad.mit.edu	37	2	234638622	234638622	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr2:234638622A>G	uc002vuy.2	+	1	850	c.850A>G	c.(850-852)AGG>GGG	p.R284G	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Missense_Mutation_p.R284G	NM_019093	NP_061966	P35503	UD13_HUMAN	UDP glycosyltransferase 1 family, polypeptide A3	284					flavonoid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;2.4e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000476)|Lung(119;0.00243)|LUSC - Lung squamous cell carcinoma(224;0.00599)		CTGTGCCAACAGGAAGCCACT	0.433													5	83					0	0	0.000673444	0	0
ESF1	51575	broad.mit.edu	37	20	13695704	13695704	+	Silent	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr20:13695704C>T	uc002woj.2	-	14	2481	c.2373G>A	c.(2371-2373)GAG>GAA	p.E791E		NM_016649	NP_057733	Q9H501	ESF1_HUMAN	ABT1-associated protein	791	Lys-rich.|Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|nucleoplasm				ovary(1)	1						GGGCCTTCTCCTCAAGGATTT	0.413													28	133					0	0	0.00127121	0	0
CBFA2T2	9139	broad.mit.edu	37	20	32199124	32199124	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr20:32199124C>T	uc002wzg.1	+	4	967	c.430C>T	c.(430-432)CTT>TTT	p.L144F	CBFA2T2_uc010zug.1_Intron|CBFA2T2_uc002wze.1_Missense_Mutation_p.L135F|CBFA2T2_uc002wzf.1_RNA|CBFA2T2_uc002wzh.1_Missense_Mutation_p.L115F|CBFA2T2_uc002wzi.1_RNA|CBFA2T2_uc002wzj.1_RNA	NM_005093	NP_005084	O43439	MTG8R_HUMAN	core-binding factor, runt domain, alpha subunit	144	TAFH.					nucleus	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			pancreas(1)|skin(1)	2						GGTGCGGACTCTTGTTCTTGC	0.488													19	76					0	0	0.00121646	0	0
PTPRT	11122	broad.mit.edu	37	20	40828021	40828021	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr20:40828021C>A	uc002xkg.2	-	16	2534	c.2350G>T	c.(2350-2352)GCC>TCC	p.A784S	PTPRT_uc010ggj.2_Missense_Mutation_p.A803S|PTPRT_uc010ggi.2_5'UTR	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	784	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGCTTCTTGGCCAGCTTCCTT	0.552													37	119					4.00102e-26	4.47173e-25	0.00128727	1	0
TIAM1	7074	broad.mit.edu	37	21	32496904	32496904	+	Silent	SNP	A	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr21:32496904A>G	uc002yow.1	-	28	4714	c.4242T>C	c.(4240-4242)TAT>TAC	p.Y1414Y	TIAM1_uc011adk.1_Silent_p.Y1414Y|TIAM1_uc011adl.1_Silent_p.Y1354Y	NM_003253	NP_003244	Q13009	TIAM1_HUMAN	T-cell lymphoma invasion and metastasis 1	1414					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cell-cell junction|cytosol	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|breast(3)|ovary(2)|large_intestine(2)	10						CAAAAGGGACATATTGCTGGG	0.532													37	28					0	0	0.00111076	0	0
LRRN1	57633	broad.mit.edu	37	3	3887651	3887651	+	Silent	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr3:3887651G>A	uc003bpt.3	+	2	2087	c.1326G>A	c.(1324-1326)ACG>ACA	p.T442T	SUMF1_uc003bps.1_Intron	NM_020873	NP_065924	Q6UXK5	LRRN1_HUMAN	leucine rich repeat neuronal 1 precursor	442	Ig-like C2-type.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				Epithelial(13;0.000886)|all cancers(10;0.0032)|OV - Ovarian serous cystadenocarcinoma(96;0.00608)|STAD - Stomach adenocarcinoma(44;0.0617)		TCGGCACGACGGTTTTCCTAG	0.448													67	31					0	0	0.00361006	0	0
BRPF1	7862	broad.mit.edu	37	3	9780769	9780769	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr3:9780769A>T	uc003bse.2	+	3	1085	c.686A>T	c.(685-687)AAT>ATT	p.N229I	BRPF1_uc003bsf.2_Missense_Mutation_p.N229I|BRPF1_uc003bsg.2_Missense_Mutation_p.N229I|BRPF1_uc011ati.1_Missense_Mutation_p.N229I	NM_004634	NP_004625	P55201	BRPF1_HUMAN	bromodomain and PHD finger-containing protein 1	229					histone H3 acetylation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|MOZ/MORF histone acetyltransferase complex|plasma membrane	DNA binding|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Medulloblastoma(99;0.227)					GATATCATGAATGAGCGTCGG	0.493													13	53					0	0	0.00136819	0	0
POU1F1	5449	broad.mit.edu	37	3	87309092	87309092	+	Silent	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr3:87309092C>T	uc003dqq.1	-	6	953	c.828G>A	c.(826-828)CTG>CTA	p.L276L	POU1F1_uc010hoj.1_Silent_p.L302L	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	276					negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		AACTCTGATTCAGACTTGTTT	0.373													11	54					0	0	0.00136819	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185376142	185376142	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr3:185376142G>C	uc003fpo.2	-	11	1335	c.1256C>G	c.(1255-1257)CCG>CGG	p.P419R	IGF2BP2_uc010hyi.2_Missense_Mutation_p.P362R|IGF2BP2_uc010hyj.2_Missense_Mutation_p.P356R|IGF2BP2_uc010hyk.2_Missense_Mutation_p.P283R|IGF2BP2_uc010hyl.2_Missense_Mutation_p.P313R|IGF2BP2_uc003fpp.2_Missense_Mutation_p.P376R|IGF2BP2_uc003fpq.2_Missense_Mutation_p.P424R	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	419					anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			GTGATGATGCGGGAACGGGCC	0.592													3	108					0	0	6.4e-05	0	0
KIT	3815	broad.mit.edu	37	4	55599340	55599340	+	Missense_Mutation	SNP	T	G	G	rs121913514		TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr4:55599340T>G	uc010igr.2	+	17	2553	c.2466T>G	c.(2464-2466)AAT>AAG	p.N822K	KIT_uc010igs.2_Missense_Mutation_p.N818K	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	822	Protein kinase.|Cytoplasmic (Potential).		N -> K (in a germ cell tumor of the testis; somatic mutation).		male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.N822K(83)|p.N822Y(9)|p.N822H(3)|p.S821_N822>GY(1)|p.N822T(1)|p.N822S(1)|p.N822N(1)|p.N822I(1)|p.N822D(1)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ATGATTCTAATTATGTGGTTA	0.383	N822K(KASUMI1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				92	53					0	0	0.00361006	0	0
YTHDC1	91746	broad.mit.edu	37	4	69188621	69188621	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr4:69188621C>G	uc003hdx.2	-	11	1800	c.1447G>C	c.(1447-1449)GAA>CAA	p.E483Q	YTHDC1_uc003hdy.2_Missense_Mutation_p.E465Q	NM_001031732	NP_001026902	Q96MU7	YTDC1_HUMAN	splicing factor YT521-B isoform 1	483	YTH.									upper_aerodigestive_tract(1)|ovary(1)	2						GTTCCACATTCAAGTTCAATT	0.373													12	54					0	0	0.00316338	0	0
BBS7	55212	broad.mit.edu	37	4	122766735	122766735	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr4:122766735A>C	uc003ied.2	-	11	1328	c.1154T>G	c.(1153-1155)TTT>TGT	p.F385C	BBS7_uc003iee.1_Missense_Mutation_p.F385C	NM_176824	NP_789794	Q8IWZ6	BBS7_HUMAN	Bardet-Biedl syndrome 7 protein isoform a	385					cilium morphogenesis|digestive tract morphogenesis|fat cell differentiation|heart looping|melanosome transport|pigment granule aggregation in cell center|response to stimulus|visual perception	BBSome|centrosome|cilium membrane	protein binding			ovary(1)	1						ATTTAGTGTAAATTTATCATT	0.328									Bardet-Biedl_syndrome				11	69					0	0	0.000978159	0	0
LPCAT1	79888	broad.mit.edu	37	5	1494950	1494950	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr5:1494950G>A	uc003jcm.2	-	3	475	c.358C>T	c.(358-360)CGG>TGG	p.R120W		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	120	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		AGCGCCTGCCGCCCCTTCACG	0.652													8	18					0	0	0.000673444	0	0
PRDM9	56979	broad.mit.edu	37	5	23522742	23522742	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr5:23522742C>A	uc003jgo.2	+	8	812	c.630C>A	c.(628-630)AAC>AAA	p.N210K		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	210					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						TGTGTCAGAACTTCTTCATTG	0.498										HNSCC(3;0.000094)			8	44					5.18039e-06	5.18039e-05	0.00307968	1	0
IL6ST	3572	broad.mit.edu	37	5	55248114	55248114	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr5:55248114T>G	uc003jqq.2	-	12	1771	c.1516A>C	c.(1516-1518)AGC>CGC	p.S506R	IL6ST_uc010iwb.2_Missense_Mutation_p.S445R|IL6ST_uc010iwc.2_Intron|IL6ST_uc010iwd.2_Intron|IL6ST_uc011cqk.1_Missense_Mutation_p.S217R|IL6ST_uc003jqr.2_3'UTR|IL6ST_uc010iwe.1_5'Flank	NM_002184	NP_002175	P40189	IL6RB_HUMAN	interleukin 6 signal transducer isoform 1	506	Extracellular (Potential).|Fibronectin type-III 4.				interleukin-6-mediated signaling pathway|leukemia inhibitory factor signaling pathway|negative regulation of interleukin-6-mediated signaling pathway|positive regulation of anti-apoptosis|positive regulation of cardiac muscle hypertrophy|positive regulation of osteoblast differentiation|positive regulation of T cell proliferation|positive regulation of tyrosine phosphorylation of Stat1 protein|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation vascular endothelial growth factor production	ciliary neurotrophic factor receptor complex|extracellular region|extracellular space|interleukin-6 receptor complex|oncostatin-M receptor complex	ciliary neurotrophic factor receptor activity|ciliary neurotrophic factor receptor binding|growth factor binding|protein homodimerization activity			large_intestine(1)|ovary(1)	2		Lung NSC(810;8.69e-05)|Prostate(74;0.00308)|Breast(144;0.0544)|Ovarian(174;0.223)				GATTCAGGGCTTCCTGGTCCA	0.363			O		hepatocellular ca								46	47					0	0	0.00361006	0	0
PCDHA7	56141	broad.mit.edu	37	5	140214937	140214937	+	Silent	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr5:140214937C>T	uc003lhq.2	+	1	969	c.969C>T	c.(967-969)GTC>GTT	p.V323V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Silent_p.V323V	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	323	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGAGGCTGTCGATAAAGGCT	0.473													12	44					0	0	0.00244969	0	0
ANXA6	309	broad.mit.edu	37	5	150488079	150488079	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr5:150488079C>T	uc003ltl.1	-	23	1869	c.1717G>A	c.(1717-1719)GAC>AAC	p.D573N	ANXA6_uc011dcp.1_Missense_Mutation_p.D541N|ANXA6_uc003ltm.1_Missense_Mutation_p.D567N|ANXA6_uc003ltn.1_Missense_Mutation_p.D360N|ANXA6_uc003lto.1_Missense_Mutation_p.D160N	NM_001155	NP_001146	P08133	ANXA6_HUMAN	annexin VI isoform 1	573	Annexin 7.					melanosome	calcium ion binding|calcium-dependent phospholipid binding|protein binding				0		Medulloblastoma(196;0.0912)|all_hematologic(541;0.208)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGCTCCACGTCATAGTTGGTC	0.572													41	111					0	0	0.00222228	0	0
SNX14	57231	broad.mit.edu	37	6	86253338	86253338	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr6:86253338C>G	uc003pkr.2	-	13	1442	c.1249G>C	c.(1249-1251)GAA>CAA	p.E417Q	SNX14_uc003pkp.2_Missense_Mutation_p.E280Q|SNX14_uc003pkq.2_Missense_Mutation_p.E32Q|SNX14_uc011dzg.1_Missense_Mutation_p.E365Q|SNX14_uc003pks.2_Missense_Mutation_p.E373Q|SNX14_uc003pkt.2_Missense_Mutation_p.E417Q	NM_153816	NP_722523	Q9Y5W7	SNX14_HUMAN	sorting nexin 14 isoform a	417	RGS.				cell communication|protein transport	integral to membrane	phosphatidylinositol binding|signal transducer activity				0		all_cancers(76;4.83e-07)|Acute lymphoblastic leukemia(125;3.3e-08)|Prostate(29;2.55e-07)|all_hematologic(105;3.66e-05)|all_epithelial(107;0.000695)|Lung NSC(302;0.197)|all_lung(197;0.24)		BRCA - Breast invasive adenocarcinoma(108;0.0423)		TGAATCTCTTCTACAATGAAG	0.308													2	12					0	0	6.4e-05	0	0
LRRC4	64101	broad.mit.edu	37	7	127669618	127669618	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr7:127669618G>A	uc003vmk.2	-	2	1213	c.1076C>T	c.(1075-1077)CCT>CTT	p.P359L	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	359	Extracellular (Potential).|Ig-like.					cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		GAGGTCTCGAGGTGCGTCCAT	0.597													11	52					0	0	0.00185496	0	0
SMO	6608	broad.mit.edu	37	7	128846044	128846044	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr7:128846044T>C	uc003vor.2	+	5	1254	c.974T>C	c.(973-975)CTG>CCG	p.L325P	SMO_uc003vos.2_5'UTR	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	325	Helical; Name=3; (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						TACTACGCCCTGATGGCTGGT	0.562			Mis		skin basal cell 								4	250					0	0	0.000602214	0	0
TRY6	154754	broad.mit.edu	37	7	142481888	142481888	+	Silent	SNP	T	C	C	rs138077672	by1000genomes	TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr7:142481888T>C	uc011ksq.1	+	4	650	c.567T>C	c.(565-567)CTT>CTC	p.L189L	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|uc003wan.1_Intron	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						TGGGCTTCCTTGAGGGAGGCA	0.522													4	129					0	0	0.000442599	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274													5	68					0	0	0.00307968	0	0
ZNF16	7564	broad.mit.edu	37	8	146156591	146156591	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr8:146156591G>A	uc003zet.2	-	4	1769	c.1582C>T	c.(1582-1584)CGC>TGC	p.R528C	ZNF16_uc003zeu.2_Missense_Mutation_p.R528C	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	528	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		TTGGAGCTGCGACCAAAGGTC	0.567													20	40					0	0	0.000720815	0	0
GRIN3A	116443	broad.mit.edu	37	9	104433261	104433261	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr9:104433261C>A	uc004bbp.1	-	3	2034	c.1433G>T	c.(1432-1434)TGG>TTG	p.W478L	GRIN3A_uc004bbq.1_Missense_Mutation_p.W478L	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	478	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	CAAGCGGGTCCACATTGGCTT	0.498													62	118					1.17621e-14	1.24156e-13	0.00361006	1	0
RPL22	6146	broad.mit.edu	37	1	6257784	6257785	+	Frame_Shift_Ins	INS	-	T	T			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr1:6257784_6257785insT	uc001amd.2	-	2	90_91	c.44_45insA	c.(43-45)AAGfs	p.K15fs	RPL22_uc001ame.2_Frame_Shift_Ins_p.K15fs	NM_000983	NP_000974	P35268	RL22_HUMAN	ribosomal protein L22 proprotein	15					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	heparin binding|RNA binding|structural constituent of ribosome				0	Ovarian(185;0.0634)	all_cancers(23;2.78e-38)|all_epithelial(116;8.88e-22)|all_lung(118;7.95e-08)|Lung NSC(185;1.6e-06)|all_neural(13;3.18e-06)|all_hematologic(16;8.99e-06)|Acute lymphoblastic leukemia(12;0.000365)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00104)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0392)|Medulloblastoma(700;0.211)		Epithelial(90;4.53e-38)|GBM - Glioblastoma multiforme(13;3.33e-32)|OV - Ovarian serous cystadenocarcinoma(86;2.8e-19)|Colorectal(212;6.8e-08)|COAD - Colon adenocarcinoma(227;8.04e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000896)|BRCA - Breast invasive adenocarcinoma(365;0.00107)|STAD - Stomach adenocarcinoma(132;0.00311)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.182)		GAACTTGCTTCTTTTTTTTGCC	0.401			T	RUNX1	AML|CML								8	47	---	---	---	---					
LOC653544	653544	broad.mit.edu	37	10	135491013	135491014	+	Frame_Shift_Ins	INS	-	T	T	rs138894859		TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr10:135491013_135491014insT	uc010qvi.1	+	1	735_736	c.624_625insT	c.(622-627)GCCAGGfs	p.A208fs		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	208_209						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ATCGAAGGGCCAGGCACCCGGG	0.708													8	135	---	---	---	---					
IFITM5	387733	broad.mit.edu	37	11	299396	299396	+	Frame_Shift_Del	DEL	G	-	-	rs142041432		TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr11:299396delG	uc001low.1	-	1	131	c.95delC	c.(94-96)CCGfs	p.P32fs		NM_001025295	NP_001020466	A6NNB3	IFM5_HUMAN	interferon induced transmembrane protein 5	32	Extracellular (Potential).				multicellular organismal development|regulation of bone mineralization|response to biotic stimulus	integral to membrane|plasma membrane					0		all_cancers(49;1.12e-06)|all_epithelial(84;0.000375)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.73e-28)|Epithelial(43;3.42e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.14e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0328)|LUSC - Lung squamous cell carcinoma(625;0.122)		GTCTCGAGGCGGGGGGTGCGG	0.677													2	4	---	---	---	---					
OR5D14	219436	broad.mit.edu	37	11	55563137	55563140	+	Frame_Shift_Del	DEL	ATGT	-	-			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr11:55563137_55563140delATGT	uc010rim.1	+	1	106_109	c.106_109delATGT	c.(106-111)ATGTATfs	p.M36fs		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	36_37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				GTTTCTGCTCATGTATGTTATCAC	0.402													33	17	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	63997567	63997568	+	Frame_Shift_Del	DEL	AA	-	-	rs10708923		TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr11:63997567_63997568delAA	uc001nyr.1	-	1	1193_1194	c.761_762delTT	c.(760-762)TTTfs	p.F254fs	DNAJC4_uc001nys.2_5'Flank|DNAJC4_uc001nyt.2_5'Flank|DNAJC4_uc001nyu.2_5'Flank					Homo sapiens cDNA FLJ34477 fis, clone HLUNG2003833.																		GTGACTTGGGAAAAAAAAAAAA	0.500													3	6	---	---	---	---					
ARCN1	372	broad.mit.edu	37	11	118455224	118455224	+	Frame_Shift_Del	DEL	T	-	-			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr11:118455224delT	uc001ptq.2	+	5	844	c.683delT	c.(682-684)CTTfs	p.L228fs	ARCN1_uc009zah.2_Intron|ARCN1_uc010ryg.1_Frame_Shift_Del_p.L140fs|ARCN1_uc009zag.2_Frame_Shift_Del_p.L269fs	NM_001655	NP_001646	P48444	COPD_HUMAN	archain isoform 1	228					COPI coating of Golgi vesicle|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	clathrin adaptor complex|COPI vesicle coat|cytosol					0	all_hematologic(175;0.0349)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.28e-05)		GCTTTAAAACTTGGAGCCAAA	0.373													10	31	---	---	---	---					
ZNF598	90850	broad.mit.edu	37	16	2049882	2049883	+	In_Frame_Ins	INS	-	TCC	TCC	rs141374045	by1000genomes	TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:2049882_2049883insTCC	uc002cof.1	-	11	1682_1683	c.1667_1668insGGA	c.(1666-1668)GAC>GAGGAC	p.555_556insE	ZNF598_uc002coe.1_5'UTR	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	555_556						intracellular	zinc ion binding			lung(1)|breast(1)	2						CCGGGCCGCCGTCCTCCTCCTC	0.703													4	9	---	---	---	---					
NOB1	28987	broad.mit.edu	37	16	69782978	69782980	+	In_Frame_Del	DEL	TCC	-	-			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:69782978_69782980delTCC	uc002exs.2	-	6	583_585	c.567_569delGGA	c.(565-570)GAGGAA>GAA	p.189_190EE>E		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	189_190	Poly-Glu.					nucleus	metal ion binding|protein binding				0						CCCGTTTTCTTCCTCCTCCTCCT	0.522													7	172	---	---	---	---					
FOXC2	2303	broad.mit.edu	37	16	86601480	86601480	+	Frame_Shift_Del	DEL	G	-	-			TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr16:86601480delG	uc002fjq.2	+	1	624	c.539delG	c.(538-540)CGGfs	p.R180fs		NM_005251	NP_005242	Q99958	FOXC2_HUMAN	forkhead box C2	180					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|embryonic viscerocranium morphogenesis|insulin receptor signaling pathway|lymphangiogenesis|metanephros development|negative regulation of transcription from RNA polymerase II promoter|neural crest cell fate commitment|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of cell adhesion mediated by integrin|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vascular wound healing|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding|transcription regulatory region DNA binding				0						AAGGAGGAGCGGGCCCACCTC	0.682									Late-onset_Hereditary_Lymphedema				13	23	---	---	---	---					
SCARF1	8578	broad.mit.edu	37	17	1548956	1548957	+	In_Frame_Ins	INS	-	AGC	AGC	rs142617742	by1000genomes	TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr17:1548956_1548957insAGC	uc002fsz.1	-	1	85_86	c.35_36insGCT	c.(34-36)CTC>CTGCTC	p.12_12L>LL	SCARF1_uc002fsy.1_In_Frame_Ins_p.12_12L>LL|SCARF1_uc002fta.1_RNA|SCARF1_uc010cjv.1_In_Frame_Ins_p.12_12L>LL	NM_003693	NP_003684	Q14162	SREC_HUMAN	scavenger receptor class F, member 1 isoform 1	12					cell adhesion|neuron remodeling|positive regulation of axon regeneration|receptor-mediated endocytosis	integral to membrane	low-density lipoprotein particle binding|scavenger receptor activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		CCCGAGTCCAGAGCAGCAGCAG	0.698													9	23	---	---	---	---					
PPM1N	147699	broad.mit.edu	37	19	46002007	46002007	+	Frame_Shift_Del	DEL	C	-	-	rs140525169	by1000genomes	TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr19:46002007delC	uc002pce.2	+	1	277	c.277delC	c.(277-279)CCCfs	p.P93fs	RTN2_uc002pcb.2_5'Flank|RTN2_uc002pcc.2_5'Flank|RTN2_uc002pcd.2_5'Flank|PPM1N_uc002pcf.2_5'Flank	NM_001080401	NP_001073870	Q8N819	PPM1N_HUMAN	protein phosphatase 1B-like	93	PP2C-like.						magnesium ion binding|manganese ion binding|phosphoprotein phosphatase activity				0						ACCTGGTCTGCCCCCGGGCTG	0.697													2	4	---	---	---	---					
VENTXP7	391518	broad.mit.edu	37	3	21447901	21447902	+	RNA	INS	-	CC	CC	rs143568999	by1000genomes	TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr3:21447901_21447902insCC	uc003ccd.2	+	1		c.684_685insCC				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						CTGGCATACCACCCCCCACGCC	0.663													6	2	---	---	---	---					
HNRNPA2B1	3181	broad.mit.edu	37	7	26236930	26236934	+	Splice_Site	DEL	CTTAC	-	-	rs111244034		TCGA-GN-A264-06A-11D-A196-08	TCGA-GN-A264-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	450e8eba-a3a9-4dcb-b423-e33dfcd5c34e	bee27bc1-98f6-4819-b8af-ad2d0aaa3dce	g.chr7:26236930_26236934delCTTAC	uc003sxr.3	-	4	516	c.300_splice	c.e4+1	p.E100_splice	HNRNPA2B1_uc003sxs.3_Splice_Site_p.E88_splice	NM_031243	NP_112533	P22626	ROA2_HUMAN	heterogeneous nuclear ribonucleoprotein A2/B1						RNA transport	catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	nucleotide binding|protein binding|protein binding|RNA binding|single-stranded telomeric DNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TCATTGTTTGCTTACCTCTCTTGCT	0.400			T	ETV1	prostate								73	222	---	---	---	---					
