Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PANK4	55229	broad.mit.edu	37	1	2452661	2452661	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:2452661T>G	uc001ajm.1	-	3	310	c.301A>C	c.(301-303)ATC>CTC	p.I101L	PANK4_uc010nza.1_Missense_Mutation_p.I101L	NM_018216	NP_060686	Q9NVE7	PANK4_HUMAN	pantothenate kinase 4	101					coenzyme A biosynthetic process	cytoplasm	ATP binding|pantothenate kinase activity			upper_aerodigestive_tract(1)|large_intestine(1)|ovary(1)	3	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.54e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-23)|GBM - Glioblastoma multiforme(42;2.81e-08)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.00445)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		CAGGCTTCGATGTAGGTATTC	0.498													33	64					0	0	0.002096	0	0
CCDC27	148870	broad.mit.edu	37	1	3669219	3669219	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:3669219G>A	uc001akv.2	+	1	255	c.174G>A	c.(172-174)TCG>TCA	p.S58S		NM_152492	NP_689705	Q2M243	CCD27_HUMAN	coiled-coil domain containing 27	58										skin(1)	1	all_cancers(77;0.0385)|Ovarian(185;0.0634)|Lung NSC(156;0.21)|all_lung(157;0.218)	all_epithelial(116;5.52e-17)|all_lung(118;1.04e-06)|Lung NSC(185;0.000214)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Lung SC(97;0.0367)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.127)		Epithelial(90;1.11e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.35e-22)|GBM - Glioblastoma multiforme(42;3.46e-16)|Colorectal(212;1.17e-05)|COAD - Colon adenocarcinoma(227;5.76e-05)|Kidney(185;0.00036)|BRCA - Breast invasive adenocarcinoma(365;0.000696)|KIRC - Kidney renal clear cell carcinoma(229;0.00558)|STAD - Stomach adenocarcinoma(132;0.00645)|Lung(427;0.203)		GGCACAGTTCGATGTCCAGCT	0.602													10	52					0	0	0.006214	0	0
CHD5	26038	broad.mit.edu	37	1	6195313	6195313	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:6195313C>T	uc001amb.1	-	18	2947	c.2847G>A	c.(2845-2847)CGG>CGA	p.R949R	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	949					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		TCAGCTCCACCCGGACAATGA	0.617													30	28					0	0	0.008361	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	17965056	17965056	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:17965056G>A	uc001ban.2	+	20	2203	c.2044_splice	c.e20-1	p.N682_splice	ARHGEF10L_uc009vpe.1_Splice_Site_p.N643_splice|ARHGEF10L_uc001bao.2_Splice_Site_p.N643_splice|ARHGEF10L_uc001bap.2_Splice_Site_p.N638_splice|ARHGEF10L_uc010ocr.1_Splice_Site_p.N440_splice|ARHGEF10L_uc001baq.2_Splice_Site_p.N443_splice|ARHGEF10L_uc010ocs.1_Splice_Site_p.N455_splice|ARHGEF10L_uc001bar.2_Splice_Site_p.N385_splice|ARHGEF10L_uc009vpf.2_Splice_Site	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)						regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		CTGAACCCTAGAACCTGAACA	0.562													16	26					0	0	0.006122	0	0
ACTL8	81569	broad.mit.edu	37	1	18149669	18149669	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:18149669G>A	uc001bat.2	+	2	382	c.166G>A	c.(166-168)GAC>AAC	p.D56N		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	56						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		CCTGGGCATCGACATTTGCCA	0.572													22	65					0	0	0.004656	0	0
ADC	113451	broad.mit.edu	37	1	33583638	33583638	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:33583638G>C	uc001bwr.2	+	11	1752	c.1165G>C	c.(1165-1167)GCC>CCC	p.A389P	ADC_uc001bws.2_Missense_Mutation_p.A389P|ADC_uc009vue.2_Missense_Mutation_p.A389P|ADC_uc001bwt.1_Missense_Mutation_p.A294P|ADC_uc001bwu.2_Missense_Mutation_p.A294P|ADC_uc001bwv.2_Missense_Mutation_p.A294P|ADC_uc001bww.2_Missense_Mutation_p.A294P|ADC_uc001bwx.1_Missense_Mutation_p.A366P|ADC_uc009vug.2_Missense_Mutation_p.A409P	NM_052998	NP_443724	Q96A70	ADC_HUMAN	ODC antizyme inhibitor-2	389					polyamine biosynthetic process|spermatogenesis	cytosol	arginine decarboxylase activity			ovary(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)			L-Arginine(DB00125)|Pyridoxal Phosphate(DB00114)	CAACATGGGCGCCTACACTGT	0.637													14	45					0	0	0.002450	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370147	35370147	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:35370147G>A	uc001byc.2	-	1	838	c.838C>T	c.(838-840)CCT>TCT	p.P280S		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	280					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				GGCTCCCCAGGGGGCCTCCCA	0.677													7	61					0	0	0.001984	0	0
CCDC24	149473	broad.mit.edu	37	1	44461725	44461725	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:44461725C>T	uc001clj.2	+	9	988	c.817C>T	c.(817-819)CGA>TGA	p.R273*	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|CCDC24_uc001clk.2_Silent_p.L226L|CCDC24_uc009vxc.2_Nonsense_Mutation_p.R237*	NM_152499	NP_689712	Q8N4L8	CCD24_HUMAN	coiled-coil domain containing 24	273											0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CCTTCGACCTCGAGGCCAGTC	0.682													19	29					0	0	0.008871	0	0
MUTYH	4595	broad.mit.edu	37	1	45799205	45799205	+	Silent	SNP	T	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:45799205T>A	uc001cnm.2	-	3	435	c.219A>T	c.(217-219)GTA>GTT	p.V73V	MUTYH_uc009vxn.2_Intron|MUTYH_uc001cnf.2_Silent_p.V48V|MUTYH_uc009vxo.2_Silent_p.V48V|MUTYH_uc001cng.2_Silent_p.V59V|MUTYH_uc001cnj.2_Intron|MUTYH_uc001cni.2_Silent_p.V48V|MUTYH_uc001cnh.2_Silent_p.V49V|MUTYH_uc001cno.2_Intron|MUTYH_uc001cnk.2_Intron|MUTYH_uc010oll.1_Intron|MUTYH_uc001cnl.2_Silent_p.V62V|MUTYH_uc009vxp.2_Silent_p.V76V|MUTYH_uc001cnn.2_Silent_p.V63V	NM_012222	NP_036354	Q9UIF7	MUTYH_HUMAN	mutY homolog isoform 1	73					depurination|mismatch repair	nucleoplasm	4 iron, 4 sulfur cluster binding|DNA N-glycosylase activity|endonuclease activity|metal ion binding|MutSalpha complex binding				0	Acute lymphoblastic leukemia(166;0.155)					AGGCCTGCAATACCACCTCTT	0.592			Mis			colorectal		BER_DNA_glycosylases	MUTYH-associated_polyposis				19	25					0	0	0.007413	0	0
C1orf177	163747	broad.mit.edu	37	1	55279566	55279566	+	Missense_Mutation	SNP	T	G	G	rs142853163		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:55279566T>G	uc001cyb.3	+	7	896	c.842T>G	c.(841-843)GTT>GGT	p.V281G	C1orf177_uc001cya.3_Missense_Mutation_p.V281G	NM_001110533	NP_001104003	Q3ZCV2	CA177_HUMAN	hypothetical protein LOC163747 isoform 2	281											0						AAGCATGGGGTTTTTTCTAAA	0.443													13	68					0	0	0.001855	0	0
ZZZ3	26009	broad.mit.edu	37	1	78097898	78097898	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:78097898G>A	uc001dhq.2	-	5	1618	c.1142C>T	c.(1141-1143)TCA>TTA	p.S381L	ZZZ3_uc001dhr.2_Intron|ZZZ3_uc009wbz.1_Missense_Mutation_p.S381L|ZZZ3_uc001dhp.2_Missense_Mutation_p.S381L	NM_015534	NP_056349	Q8IYH5	ZZZ3_HUMAN	zinc finger, ZZ-type containing 3	381					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|large_intestine(1)	5						CCTTCGTGGTGAGGTTCTCAG	0.438													10	15					0	0	0.001368	0	0
CTBS	1486	broad.mit.edu	37	1	85029074	85029075	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:85029074_85029075GG>AA	uc001dka.2	-	6	887_888	c.822_823CC>TT	c.(820-825)GTCCCT>GTTTCT	p.P275S	SPATA1_uc001djz.1_Intron|CTBS_uc001dkc.2_Missense_Mutation_p.P184S|CTBS_uc001dkd.2_Missense_Mutation_p.P69S|CTBS_uc001dkb.2_Missense_Mutation_p.P69S	NM_004388	NP_004379	Q01459	DIAC_HUMAN	chitobiase, di-N-acetyl- precursor	275						lysosome	cation binding				0				all cancers(265;0.00727)|Epithelial(280;0.0192)|OV - Ovarian serous cystadenocarcinoma(397;0.166)		CCCCGGAAAGGGACTTTTGCAA	0.381													4	28					0	0	0.004672	0	0
NBPF14	25832	broad.mit.edu	37	1	148012521	148012521	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:148012521A>G	uc001eqq.2	-	12	1455	c.1438T>C	c.(1438-1440)TTT>CTT	p.F480L	LOC200030_uc001eqe.2_Intron|LOC200030_uc001eqf.2_Intron|LOC200030_uc001eqg.2_Intron|FLJ39739_uc001eqo.1_Intron|NBPF14_uc010pab.1_Intron|NBPF14_uc010pac.1_Intron|NBPF14_uc001eqx.2_Missense_Mutation_p.F391L|NBPF14_uc010pae.1_Missense_Mutation_p.F147L|NBPF14_uc010paf.1_Missense_Mutation_p.F635L|NBPF14_uc010pad.1_5'Flank|NBPF14_uc001eqs.1_Intron	NM_015383	NP_056198	Q5TI25	NBPFE_HUMAN	hypothetical protein LOC25832	480	NBPF 5.					cytoplasm				ovary(1)	1	all_hematologic(923;0.032)					TCAAGAGAAAAGCCAACATGC	0.443													5	547					0	0	0.001168	0	0
SV2A	9900	broad.mit.edu	37	1	149877521	149877521	+	Silent	SNP	G	A	A	rs138258149		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:149877521G>A	uc001etg.2	-	12	2447	c.1956C>T	c.(1954-1956)ATC>ATT	p.I652I	SV2A_uc009wlk.2_Silent_p.I104I|SV2A_uc001eth.2_Silent_p.I652I	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	652	Helical; (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	AGAGCAGAGCGATCATGGCCG	0.542													35	85					0	0	0.003271	0	0
CELF3	11189	broad.mit.edu	37	1	151678358	151678358	+	Missense_Mutation	SNP	C	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:151678358C>G	uc001eys.1	-	11	2004	c.1210G>C	c.(1210-1212)GGC>CGC	p.G404R	CELF3_uc010pdh.1_Missense_Mutation_p.G190R|CELF3_uc001eyr.2_Missense_Mutation_p.G403R|CELF3_uc009wmy.2_Missense_Mutation_p.G354R|CELF3_uc009wmx.1_Missense_Mutation_p.G403R	NM_007185	NP_009116	Q5SZQ8	CELF3_HUMAN	trinucleotide repeat containing 4	404	RRM 3.				nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	cytoplasm|nucleus	mRNA binding|nucleotide binding			ovary(1)|central_nervous_system(1)	2						ATGACGTGGCCAAAGGGGACA	0.483													24	58					0	0	0.002780	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058138	152058138	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:152058138C>A	uc001ezo.1	-	3	2085	c.2020G>T	c.(2020-2022)GGT>TGT	p.G674C		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	674							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			TCCAGGGCACCTGTGATCTCT	0.502													76	77					7.2426e-40	1.25277e-39	0.003610	1	0
FAM189B	10712	broad.mit.edu	37	1	155220925	155220925	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:155220925C>T	uc001fjm.2	-	8	1531	c.925G>A	c.(925-927)GGC>AGC	p.G309S	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_Missense_Mutation_p.G75S|FAM189B_uc001fjn.2_Missense_Mutation_p.G213S|FAM189B_uc001fjo.2_Missense_Mutation_p.G291S|FAM189B_uc001fjp.2_Intron	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	309						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						ATGCACGAGCCATCGTGAAGC	0.592											OREG0013858	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	19					0	0	0.000978	0	0
MEX3A	92312	broad.mit.edu	37	1	156046378	156046378	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:156046378C>T	uc001fnd.3	-	2	1550	c.1550G>A	c.(1549-1551)CGA>CAA	p.R517Q		NM_001093725	NP_001087194	A1L020	MEX3A_HUMAN	MEX3A protein	517						cytoplasmic mRNA processing body|nucleus	RNA binding|zinc ion binding				0	Hepatocellular(266;0.158)|all_neural(408;0.195)					GGAGAATATTCGGATGGCTTG	0.587													24	44					0	0	0.004656	0	0
MIR765	768220	broad.mit.edu	37	1	156905999	156905999	+	RNA	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:156905999G>A	hsa-mir-765|MI0005116	-			c.38G>A			ARHGEF11_uc010phu.1_Intron|ARHGEF11_uc001fqn.2_Intron|ARHGEF11_uc001fqo.2_Intron																	0						GGCTTGAAAAGGGCTGTCTAC	0.488													12	43					0	0	0.001368	0	0
SPTA1	6708	broad.mit.edu	37	1	158612245	158612245	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:158612245G>A	uc001fst.1	-	33	4892	c.4693C>T	c.(4693-4695)CTG>TTG	p.L1565L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1565	Spectrin 15.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CACTCAATCAGGGAGTTCCCC	0.473													18	20					0	0	0.007413	0	0
CRP	1401	broad.mit.edu	37	1	159683548	159683548	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:159683548C>T	uc001ftw.2	-	2	546	c.442G>A	c.(442-444)GAA>AAA	p.E148K	CRP_uc001ftx.1_Intron|CRP_uc001fty.1_RNA	NM_000567	NP_000558	P02741	CRP_HUMAN	C-reactive protein, pentraxin-related precursor	148	Pentaxin.				acute-phase response|negative regulation of lipid storage|negative regulation of macrophage derived foam cell differentiation|opsonization		choline binding|Gram-positive bacterial cell surface binding|low-density lipoprotein particle binding|metal ion binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)				Atorvastatin(DB01076)|Bezafibrate(DB01393)	ATGCTTGCTTCTGCCCCCACA	0.547													105	180					0	0	0.003610	0	0
OLFML2B	25903	broad.mit.edu	37	1	161954616	161954616	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:161954616C>T	uc001gbu.2	-	7	2053	c.1629G>A	c.(1627-1629)CGG>CGA	p.R543R	OLFML2B_uc001gbt.2_Silent_p.R26R|OLFML2B_uc010pkq.1_Silent_p.R544R	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	543	Olfactomedin-like.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TCTCCAGGTTCCGGAACTCTA	0.517													22	138					0	0	0.003330	0	0
HMCN1	83872	broad.mit.edu	37	1	185987424	185987424	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:185987424C>T	uc001grq.1	+	34	5639	c.5410C>T	c.(5410-5412)CGG>TGG	p.R1804W		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1804	Ig-like C2-type 15.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AGGCCTTTATCGGTGCATGGC	0.418													10	16					0	0	0.006214	0	0
ADORA1	134	broad.mit.edu	37	1	203134427	203134427	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:203134427C>T	uc001gze.1	+	4	813	c.380C>T	c.(379-381)GCC>GTC	p.A127V	FMOD_uc010pqi.1_Intron|ADORA1_uc001gzf.1_Missense_Mutation_p.A127V|ADORA1_uc010pqg.1_Missense_Mutation_p.A59V|ADORA1_uc009xak.1_Silent_p.G52G|ADORA1_uc010pqh.1_Missense_Mutation_p.A160V	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	127	Helical; Name=4; (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	GCGGCGGTGGCCATAGCCGGC	0.657													16	21					0	0	0.006122	0	0
PIGR	5284	broad.mit.edu	37	1	207112655	207112655	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:207112655G>A	uc001hez.2	-	3	381	c.197C>T	c.(196-198)ACC>ATC	p.T66I	PIGR_uc009xbz.2_Missense_Mutation_p.T66I	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	66	Ig-like V-type 1.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GGAGATGAGGGTTATGCAGCC	0.577													19	42					0	0	0.002299	0	0
HHAT	55733	broad.mit.edu	37	1	210577938	210577938	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:210577938C>T	uc009xcx.2	+	6	765	c.599C>T	c.(598-600)TCC>TTC	p.S200F	HHAT_uc010psq.1_Intron|HHAT_uc001hhz.3_Missense_Mutation_p.S200F|HHAT_uc010psr.1_Missense_Mutation_p.S201F|HHAT_uc010pss.1_Missense_Mutation_p.S155F|HHAT_uc009xcy.2_Missense_Mutation_p.S135F|HHAT_uc010pst.1_Missense_Mutation_p.S137F|HHAT_uc010psu.1_Missense_Mutation_p.S135F	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	200	Helical; (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		ACCTCCTACTCCTTTCCCTGG	0.557													6	49					0	0	0.001984	0	0
HHIPL2	79802	broad.mit.edu	37	1	222716939	222716939	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:222716939C>T	uc001hnh.1	-	2	972	c.914G>A	c.(913-915)CGA>CAA	p.R305Q		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	305					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CTCACTAATTCGGATCTTTTC	0.453													245	500					0	0	0.003610	0	0
TAF1A	9015	broad.mit.edu	37	1	222750981	222750981	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:222750981G>A	uc009xdz.1	-	5	599	c.410C>T	c.(409-411)TCC>TTC	p.S137F	TAF1A_uc001hni.1_Missense_Mutation_p.S23F|TAF1A_uc001hnj.2_Missense_Mutation_p.S137F|TAF1A_uc001hnk.2_Missense_Mutation_p.S23F|TAF1A_uc010pur.1_Missense_Mutation_p.S137F	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	137					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		ATGTTGTAAGGAGATCTGCAA	0.378													118	245					0	0	0.003610	0	0
FAM177B	400823	broad.mit.edu	37	1	222920396	222920396	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:222920396G>A	uc001hnt.2	+	4	480	c.214G>A	c.(214-216)GGA>AGA	p.G72R	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	72										ovary(1)	1						ATTTTGGGCAGGACGAATAGC	0.388													15	30					0	0	0.007413	0	0
C1orf65	164127	broad.mit.edu	37	1	223567284	223567284	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:223567284C>T	uc001hoa.2	+	1	570	c.467C>T	c.(466-468)CCC>CTC	p.P156L		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	156										central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		GCTGGCACTCCCCTGAGTGGC	0.677													13	20					0	0	0.001368	0	0
C1orf55	163859	broad.mit.edu	37	1	226179048	226179048	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:226179048G>A	uc001hpu.3	-	5	590	c.537C>T	c.(535-537)TCC>TCT	p.S179S	C1orf55_uc001hpv.2_Silent_p.S179S	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	179										lung(1)	1	Breast(184;0.197)					CCATCTTGCTGGAGGCAGCCT	0.418													16	44					0	0	0.004990	0	0
PARP1	142	broad.mit.edu	37	1	226566965	226566965	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:226566965G>A	uc001hqd.3	-	12	1794	c.1623C>T	c.(1621-1623)CAC>CAT	p.H541H		NM_001618	NP_001609	P09874	PARP1_HUMAN	poly (ADP-ribose) polymerase family, member 1	541					cellular response to insulin stimulus|protein ADP-ribosylation|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nuclear envelope|nucleolus|transcription factor complex	DNA binding|identical protein binding|NAD+ ADP-ribosyltransferase activity|protein N-terminus binding|transcription factor binding|zinc ion binding			lung(3)|ovary(2)|breast(2)|skin(2)|upper_aerodigestive_tract(1)	10	Breast(184;0.133)			GBM - Glioblastoma multiforme(131;0.0531)		CATGCGCAGAGTGTTCCAGTC	0.547								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					20	101					0	0	0.003954	0	0
GNPAT	8443	broad.mit.edu	37	1	231403528	231403528	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:231403528G>T	uc001hup.3	+	9	1364	c.1158G>T	c.(1156-1158)TGG>TGT	p.W386C	GNPAT_uc009xfp.2_Missense_Mutation_p.W325C	NM_014236	NP_055051	O15228	GNPAT_HUMAN	glyceronephosphate O-acyltransferase	386					ether lipid biosynthetic process|fatty acid metabolic process|organ morphogenesis	peroxisomal matrix|peroxisomal membrane	glycerone-phosphate O-acyltransferase activity			ovary(3)|breast(1)	4	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				TGAGCCCCTGGACCCTAATAG	0.453													34	62					1.45844e-13	2.51703e-13	0.002836	1	0
TBCE	6905	broad.mit.edu	37	1	235602172	235602172	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:235602172C>T	uc001hwz.1	+	13	1328	c.1205C>T	c.(1204-1206)CCG>CTG	p.P402L	TBCE_uc001hxa.1_Missense_Mutation_p.P402L|TBCE_uc010pxr.1_Missense_Mutation_p.P453L|TBCE_uc001hxb.1_Missense_Mutation_p.P289L	NM_003193	NP_003184	Q15813	TBCE_HUMAN	beta-tubulin cofactor E	402					'de novo' posttranslational protein folding|post-chaperonin tubulin folding pathway	cytoplasm|microtubule|nucleus|plasma membrane	chaperone binding				0	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00192)|Prostate(94;0.0294)|all_epithelial(177;0.155)|Lung SC(1967;0.238)	OV - Ovarian serous cystadenocarcinoma(106;2.56e-05)			CATAAGGATCCGGAAAAAAAC	0.507													8	104					0	0	0.003080	0	0
OR6F1	343169	broad.mit.edu	37	1	247875253	247875253	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:247875253C>T	uc001idj.1	-	1	805	c.805G>A	c.(805-807)GAT>AAT	p.D269N		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	269	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TTGATCAGATCCAAGGCATCT	0.488													15	33					0	0	0.002450	0	0
OR2T3	343173	broad.mit.edu	37	1	248637424	248637424	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:248637424G>A	uc001iel.1	+	1	773	c.773G>A	c.(772-774)GGT>GAT	p.G258D		NM_001005495	NP_001005495	Q8NH03	OR2T3_HUMAN	olfactory receptor, family 2, subfamily T,	258	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGCTCTTCGGTGCTTCCTTC	0.547													27	97					0	0	0.006320	0	0
ITGA8	8516	broad.mit.edu	37	10	15639266	15639266	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:15639266C>T	uc001ioc.1	-	21	2151	c.2151G>A	c.(2149-2151)ATG>ATA	p.M717I	ITGA8_uc010qcb.1_Missense_Mutation_p.M702I	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	717	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TTACATTTTCCATCTTGTACT	0.453													7	24					0	0	0.004482	0	0
PTCHD3	374308	broad.mit.edu	37	10	27687812	27687812	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:27687812G>A	uc001itu.2	-	4	1833	c.1715C>T	c.(1714-1716)TCT>TTT	p.S572F		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	572					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						ATCTGGGACAGAACCAAATGG	0.408													3	12					0	0	0.004672	0	0
ZNF32	7580	broad.mit.edu	37	10	44139841	44139841	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:44139841G>A	uc001jbb.2	-	3	668	c.479C>T	c.(478-480)CCC>CTC	p.P160L	uc001jba.2_Intron|ZNF32_uc001jbc.2_Missense_Mutation_p.P160L	NM_001005368	NP_001005368	P17041	ZNF32_HUMAN	zinc finger protein 32	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)	1		all_neural(218;0.0182)|Ovarian(717;0.0443)|Renal(717;0.157)		Lung(62;0.179)		ACACTCGTAGGGTTTCTGTCC	0.498													9	32					0	0	0.006214	0	0
FAM35B2	439965	broad.mit.edu	37	10	47379780	47379780	+	RNA	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:47379780G>A	uc010qfz.1	+	1		c.61G>A				NR_027634				Homo sapiens cDNA FLJ59018 complete cds, highly similar to Protein FAM35A.												0						TTGCTCCACTGAAAATGACAG	0.358													6	10					0	0	0.003080	0	0
GDF2	2658	broad.mit.edu	37	10	48416352	48416352	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:48416352C>T	uc001jfa.1	-	1	505	c.342G>A	c.(340-342)ATG>ATA	p.M114I		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	114					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						CCCTACCTTCCATGCTGAAGC	0.468													6	19					0	0	0.001984	0	0
GDF10	2662	broad.mit.edu	37	10	48428967	48428967	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:48428967C>T	uc001jfb.2	-	2	1375	c.919G>A	c.(919-921)GAT>AAT	p.D307N	GDF10_uc009xnp.2_Missense_Mutation_p.D306N|GDF10_uc009xnq.1_Missense_Mutation_p.D307N	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	307					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						GGCCTCTCATCCAGCCCCGGC	0.746													3	9					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	10	51814483	51814483	+	RNA	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:51814483A>G	uc001jiz.1	-	4		c.1572T>C								Homo sapiens cDNA FLJ31813 fis, clone NT2RI2009517.																		AGGTAAGGTAACCTTTGTTGG	0.358													5	8					0	0	0.000978	0	0
A1CF	29974	broad.mit.edu	37	10	52603882	52603882	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:52603882C>T	uc001jjj.2	-	4	288	c.100G>A	c.(100-102)GAA>AAA	p.E34K	A1CF_uc010qhn.1_Missense_Mutation_p.E42K|A1CF_uc001jji.2_Missense_Mutation_p.E34K|A1CF_uc001jjh.2_Missense_Mutation_p.E42K|A1CF_uc010qho.1_Missense_Mutation_p.E42K|A1CF_uc009xov.2_Missense_Mutation_p.E34K|A1CF_uc001jjk.1_Missense_Mutation_p.E34K	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	34					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						TGTCCATTTTCCTGCAAATCC	0.413													8	14					0	0	0.003080	0	0
CCDC6	8030	broad.mit.edu	37	10	61572503	61572503	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:61572503C>T	uc001jks.3	-	5	1373	c.737G>A	c.(736-738)AGA>AAA	p.R246K		NM_005436	NP_005427	Q16204	CCDC6_HUMAN	coiled-coil domain containing 6	246						cytoplasm|cytoskeleton	SH3 domain binding|structural constituent of cytoskeleton			ovary(3)|breast(1)	4				Kidney(211;0.0597)		GGAGATATCTCTAGGCGATGG	0.408													5	13					0	0	0.000602	0	0
CDH23	64072	broad.mit.edu	37	10	73558877	73558877	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:73558877T>G	uc001jrx.3	+	49	7441	c.7064T>G	c.(7063-7065)ATT>AGT	p.I2355S	CDH23_uc001jsg.3_Missense_Mutation_p.I115S|CDH23_uc001jsh.3_Missense_Mutation_p.I115S|CDH23_uc001jsi.3_Missense_Mutation_p.I115S	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2355	Cadherin 22.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GGGAAGGTCATTGCCAACCGG	0.587													9	41					0	0	0.001368	0	0
FAM35A	54537	broad.mit.edu	37	10	88911479	88911479	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:88911479G>A	uc001kei.3	+	3	482	c.368G>A	c.(367-369)TGT>TAT	p.C123Y		NM_019054	NP_061927	Q86V20	FA35A_HUMAN	hypothetical protein LOC54537	123										ovary(2)|skin(2)	4						ATGCAAATATGTGGATTTAAA	0.358													13	25					0	0	0.001368	0	0
LIPF	8513	broad.mit.edu	37	10	90433396	90433396	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:90433396C>T	uc001kfg.1	+	7	887	c.721C>T	c.(721-723)CTT>TTT	p.L241F	LIPF_uc001kfh.1_Missense_Mutation_p.L218F|LIPF_uc010qmt.1_Missense_Mutation_p.L251F|LIPF_uc010qmu.1_Missense_Mutation_p.L208F	NM_004190	NP_004181	P07098	LIPG_HUMAN	lipase, gastric precursor	241					lipid catabolic process|triglyceride metabolic process	extracellular region	lipid binding|triglyceride lipase activity				0		Colorectal(252;0.0161)		Colorectal(12;3.91e-05)|COAD - Colon adenocarcinoma(12;5.43e-05)		TGATCAATTTCTTGCTACTGA	0.368													21	52					0	0	0.001523	0	0
RRP12	23223	broad.mit.edu	37	10	99126525	99126525	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:99126525C>T	uc001knf.2	-	27	3328	c.3189G>A	c.(3187-3189)GAG>GAA	p.E1063E	RRP12_uc001kne.2_Silent_p.E78E|RRP12_uc009xvl.2_Silent_p.E180E|RRP12_uc009xvm.2_Silent_p.E781E|RRP12_uc010qou.1_Silent_p.E1002E|RRP12_uc009xvn.2_Silent_p.E963E	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	1063	Glu-rich.					integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		GGGCGGGctcctcctcctcct	0.557													29	66					0	0	0.008361	0	0
C10orf79	80217	broad.mit.edu	37	10	105939630	105939630	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:105939630C>T	uc001kxw.2	-	18	2466	c.2350G>A	c.(2350-2352)GAA>AAA	p.E784K	C10orf79_uc009xxq.2_Missense_Mutation_p.E92K|C10orf79_uc001kxx.3_Missense_Mutation_p.E785K	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	784											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		CAAGGAATTTCCTTCTTAACA	0.358													10	55					0	0	0.000978	0	0
TCF7L2	6934	broad.mit.edu	37	10	114903757	114903757	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:114903757C>T	uc001lae.3	+	7	1268	c.761C>T	c.(760-762)CCC>CTC	p.P254L	TCF7L2_uc001lac.3_Missense_Mutation_p.P231L|TCF7L2_uc010qrk.1_Missense_Mutation_p.P231L|TCF7L2_uc010qrl.1_Missense_Mutation_p.P231L|TCF7L2_uc010qrm.1_Missense_Mutation_p.P254L|TCF7L2_uc010qrn.1_Missense_Mutation_p.P197L|TCF7L2_uc001lad.3_Missense_Mutation_p.P231L|TCF7L2_uc001lag.3_Missense_Mutation_p.P278L|TCF7L2_uc001laf.3_Missense_Mutation_p.P231L|TCF7L2_uc010qro.1_Missense_Mutation_p.P231L|TCF7L2_uc001lah.2_Missense_Mutation_p.P231L|TCF7L2_uc010qrp.1_Missense_Mutation_p.P231L|TCF7L2_uc010qrq.1_Missense_Mutation_p.P231L|TCF7L2_uc010qrr.1_Missense_Mutation_p.P173L|TCF7L2_uc010qrs.1_Missense_Mutation_p.P125L|TCF7L2_uc010qrt.1_Missense_Mutation_p.P125L|TCF7L2_uc010qru.1_Missense_Mutation_p.P148L|TCF7L2_uc010qrv.1_Missense_Mutation_p.P71L|TCF7L2_uc010qrw.1_5'UTR|TCF7L2_uc010qrx.1_Missense_Mutation_p.P111L	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	254	Mediates interaction with MAD2L2.|Pro-rich.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		GGACAAATCCCCCATCCGCTA	0.433													48	210					0	0	0.003610	0	0
NRAP	4892	broad.mit.edu	37	10	115401183	115401183	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:115401183C>T	uc001laj.2	-	13	1428	c.1264G>A	c.(1264-1266)GGA>AGA	p.G422R	NRAP_uc001lak.2_Missense_Mutation_p.G387R|NRAP_uc001lal.3_Missense_Mutation_p.G422R	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	422	Nebulin 10.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		ATACCAACTCCTTCATAGCGG	0.463													8	20					0	0	0.006214	0	0
C10orf81	79949	broad.mit.edu	37	10	115534631	115534631	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:115534631G>A	uc001lat.1	+	9	1370	c.808G>A	c.(808-810)GAA>AAA	p.E270K	C10orf81_uc001lar.1_Missense_Mutation_p.E276K|C10orf81_uc009xyc.1_Missense_Mutation_p.E188K|C10orf81_uc001las.1_Missense_Mutation_p.E188K|C10orf81_uc001lau.1_Missense_Mutation_p.E90K	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	270										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		CAGCAAAGAGGAACCCCAGAC	0.468													10	28					0	0	0.001855	0	0
FAM196A	642938	broad.mit.edu	37	10	128974537	128974537	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:128974537C>T	uc001lju.1	-	1	164	c.123G>A	c.(121-123)CGG>CGA	p.R41R	DOCK1_uc001ljt.2_Intron|DOCK1_uc010qun.1_Intron|FAM196A_uc010quo.1_Silent_p.R41R|FAM196A_uc001ljv.1_Silent_p.R41R|FAM196A_uc009yap.1_Silent_p.R41R	NM_001039762	NP_001034851	Q6ZSG2	F196A_HUMAN	hypothetical protein LOC642938	41										ovary(2)	2						GGGCTTTGTTCCGTTTTTTAA	0.582													14	98					0	0	0.002450	0	0
LOC653544	653544	broad.mit.edu	37	10	135491107	135491107	+	Missense_Mutation	SNP	G	A	A	rs138808999	by1000genomes	TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr10:135491107G>A	uc010qvi.1	+	1	829	c.718G>A	c.(718-720)GCC>ACC	p.A240T		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	240						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CTCGTGGGTCGCCTTCGCCCA	0.771													5	32					0	0	0.003080	0	0
MUC2	4583	broad.mit.edu	37	11	1097261	1097262	+	Missense_Mutation	DNP	TG	CC	CC			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:1097261_1097262TG>CC	uc001lsx.1	+	38	13790_13791	c.13763_13764TG>CC	c.(13762-13764)GTG>GCC	p.V4588A		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4588	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	ATCAACTACGTGGTGGACATCC	0.609													15	10					0	0	0.004672	0	0
TRPM5	29850	broad.mit.edu	37	11	2437152	2437152	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:2437152C>T	uc001lwm.3	-	8	1121	c.1112G>A	c.(1111-1113)GGG>GAG	p.G371E	TRPM5_uc010qxl.1_Missense_Mutation_p.G371E|TRPM5_uc009ydn.2_Missense_Mutation_p.G373E	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	371	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CTCCACGTCCCCATTGAAGAT	0.642													68	87					0	0	0.003610	0	0
OR52J3	119679	broad.mit.edu	37	11	5068359	5068359	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:5068359C>T	uc010qyv.1	+	1	604	c.604C>T	c.(604-606)CTT>TTT	p.L202F		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TATCTATGGGCTTTTTGTAGT	0.443													11	17					0	0	0.008291	0	0
OR52N2	390077	broad.mit.edu	37	11	5842082	5842082	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:5842082G>A	uc010qzp.1	+	1	517	c.517G>A	c.(517-519)GGG>AGG	p.G173R	TRIM5_uc001mbq.1_Intron	NM_001005174	NP_001005174	Q8NGI0	O52N2_HUMAN	olfactory receptor, family 52, subfamily N,	173	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.49e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTATTGCCGGGGGAACTTCAT	0.517													9	15					0	0	0.004482	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16816142	16816142	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:16816142G>A	uc001mmo.2	-	19	2653	c.2638C>T	c.(2638-2640)CGA>TGA	p.R880*	PLEKHA7_uc010rcu.1_Nonsense_Mutation_p.R880*|PLEKHA7_uc001mmm.2_5'Flank|PLEKHA7_uc010rcv.1_Nonsense_Mutation_p.R454*|PLEKHA7_uc001mmn.2_Nonsense_Mutation_p.R588*	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	880	Pro-rich.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						GGGAAGAGTCGAACCTCCAGA	0.622													25	40					0	0	0.003330	0	0
RAG1	5896	broad.mit.edu	37	11	36595117	36595117	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:36595117C>T	uc001mwu.3	+	2	387	c.263C>T	c.(262-264)TCA>TTA	p.S88L	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	88	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				CCTAAGTTTTCAAAGAAATTT	0.488									Familial_Hemophagocytic_Lymphohistiocytosis				21	24					0	0	0.001523	0	0
OR4A5	81318	broad.mit.edu	37	11	51412281	51412281	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:51412281C>T	uc001nhi.1	-	1	115	c.115G>A	c.(115-117)GGG>AGG	p.G39R		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	39	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				AGCAGGTTCCCCACCACTGTC	0.433													5	4					0	0	0.000602	0	0
MALAT1	378938	broad.mit.edu	37	11	65272116	65272116	+	RNA	SNP	T	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:65272116T>A	uc010roh.1	+	1		c.6884T>A			uc001ody.2_5'Flank	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						CTGAAGCCTTTAGTCTTTTCC	0.378													12	13					0	0	0.001368	0	0
CATSPER1	117144	broad.mit.edu	37	11	65790426	65790426	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:65790426C>T	uc001ogt.2	-	2	1461	c.1323G>A	c.(1321-1323)CGG>CGA	p.R441R		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	441	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						GGGTCAGGTTCCGGATCATTT	0.542											OREG0021092	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	28	31					0	0	0.005443	0	0
SPTBN2	6712	broad.mit.edu	37	11	66457350	66457350	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:66457350G>A	uc001ojd.2	-	28	5947	c.5875C>T	c.(5875-5877)CGG>TGG	p.R1959W	SPTBN2_uc001ojc.1_5'Flank	NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	1959	Spectrin 16.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CGGTCTGCCCGGGCCTCTATC	0.642													8	25					0	0	0.004482	0	0
PC	5091	broad.mit.edu	37	11	66633742	66633742	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:66633742G>A	uc001ojn.1	-	9	1150	c.1101C>T	c.(1099-1101)ATC>ATT	p.I367I	PC_uc001ojo.1_Silent_p.I367I|PC_uc001ojp.1_Silent_p.I367I	NM_022172	NP_071504	P11498	PYC_HUMAN	pyruvate carboxylase precursor	367	Biotin carboxylation.				gluconeogenesis|lipid biosynthetic process	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|metal ion binding|pyruvate carboxylase activity			ovary(2)|lung(1)|kidney(1)	4		Melanoma(852;0.0525)		Lung(977;0.153)|LUSC - Lung squamous cell carcinoma(976;0.227)	Biotin(DB00121)|Pyruvic acid(DB00119)	CGTTGATGCGGATGTTCTCCT	0.682													18	18					0	0	0.002299	0	0
LRP5	4041	broad.mit.edu	37	11	68174156	68174156	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:68174156C>T	uc001ont.2	+	9	2041	c.1966C>T	c.(1966-1968)CAC>TAC	p.H656Y	LRP5_uc009ysg.2_Missense_Mutation_p.H66Y	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	656	Beta-propeller 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						AGCCGCCATCCACAGGATCTC	0.597													8	15					0	0	0.003080	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106810423	106810423	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:106810423G>A	uc001pjg.1	-	4	1359	c.969C>T	c.(967-969)TTC>TTT	p.F323F	GUCY1A2_uc010rvo.1_Silent_p.F323F|GUCY1A2_uc009yxn.1_Silent_p.F323F	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	323					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		AGGCTCTACAGAAGGTGTTGA	0.453													3	7					0	0	0.004672	0	0
HSPB2	3316	broad.mit.edu	37	11	111784511	111784511	+	Silent	SNP	T	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:111784511T>A	uc001pmg.2	+	2	535	c.441T>A	c.(439-441)CCT>CCA	p.P147P	CRYAB_uc001pmf.1_5'Flank|CRYAB_uc010rwp.1_5'Flank|HSPB2_uc009yyj.2_RNA|C11orf52_uc001pmh.2_Intron	NM_001541	NP_001532	Q16082	HSPB2_HUMAN	heat shock 27kDa protein 2	147					response to heat|response to unfolded protein	cytosol|nucleus	enzyme activator activity|protein binding			ovary(2)|skin(1)	3		all_cancers(61;3.75e-11)|all_epithelial(67;2.33e-06)|Melanoma(852;9.42e-06)|all_hematologic(158;0.000885)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0512)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)		Epithelial(105;3.57e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|all cancers(92;6.57e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.051)		TGGAAGCACCTCGGGGTGGCC	0.592													18	15					0	0	0.006122	0	0
DSCAML1	57453	broad.mit.edu	37	11	117329567	117329567	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:117329567C>T	uc001prh.1	-	19	3653	c.3651G>A	c.(3649-3651)ATG>ATA	p.M1217I		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1157	Fibronectin type-III 3.|Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGAACTTCTCCATGCCCCGCA	0.632													22	32					0	0	0.002299	0	0
NLRX1	79671	broad.mit.edu	37	11	119050970	119050970	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:119050970C>T	uc001pvu.2	+	7	2455	c.2240C>T	c.(2239-2241)CCT>CTT	p.P747L	NLRX1_uc010rzc.1_Missense_Mutation_p.P569L|NLRX1_uc001pvv.2_Missense_Mutation_p.P747L|NLRX1_uc001pvw.2_Missense_Mutation_p.P747L|NLRX1_uc001pvx.2_Missense_Mutation_p.P747L	NM_024618	NP_078894	Q86UT6	NLRX1_HUMAN	NLR family member X1 isoform 1	747	LRR 2.|Required for the repression of MAVS- induced interferon signaling.				innate immune response|interspecies interaction between organisms|negative regulation of type I interferon production	mitochondrial outer membrane	ATP binding			ovary(1)|skin(1)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		ACACTCCTGCCTGTCTTCCTG	0.597													11	13					0	0	0.000978	0	0
VWA5A	4013	broad.mit.edu	37	11	123988472	123988472	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr11:123988472C>T	uc001pzu.2	+	4	345	c.136C>T	c.(136-138)CCT>TCT	p.P46S	VWA5A_uc001pzr.2_Missense_Mutation_p.P46S|VWA5A_uc001pzs.2_Missense_Mutation_p.P46S|VWA5A_uc010sae.1_Missense_Mutation_p.P62S|VWA5A_uc001pzt.2_Missense_Mutation_p.P46S	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	46	VIT.									upper_aerodigestive_tract(1)|ovary(1)	2						GGAGAAAGTTCCTTTGGAGGC	0.458													28	38					0	0	0.002445	0	0
ANO2	57101	broad.mit.edu	37	12	5708726	5708726	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:5708726C>T	uc001qnm.2	-	21	2229	c.2157G>A	c.(2155-2157)TCG>TCA	p.S719S		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	724	Extracellular (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CTGGATGTTTCGAATGGGCAG	0.453													32	40					0	0	0.002445	0	0
CLEC6A	93978	broad.mit.edu	37	12	8629986	8629986	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:8629986G>A	uc001qum.1	+	6	673	c.556G>A	c.(556-558)GGA>AGA	p.G186R		NM_001007033	NP_001007034	Q6EIG7	CLC6A_HUMAN	dectin-2	186	Extracellular (Potential).|C-type lectin.				defense response to fungus|innate immune response|positive regulation of cytokine secretion|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane	sugar binding			breast(1)	1	Lung SC(5;0.184)					GAAACCTACAGGATGGGGCTG	0.383													29	13					0	0	0.005443	0	0
LRRK2	120892	broad.mit.edu	37	12	40643669	40643669	+	Missense_Mutation	SNP	T	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:40643669T>G	uc001rmg.3	+	8	1001	c.880T>G	c.(880-882)TTT>GTT	p.F294V	LRRK2_uc001rmh.1_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	294					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AGTCCATGAGTTTGTGGTGAA	0.393													5	4					0	0	0.000602	0	0
CNTN1	1272	broad.mit.edu	37	12	41333227	41333227	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:41333227C>T	uc001rmm.1	+	12	1432	c.1319C>T	c.(1318-1320)GCT>GTT	p.A440V	CNTN1_uc009zjy.1_Missense_Mutation_p.A440V|CNTN1_uc001rmn.1_Missense_Mutation_p.A429V|CNTN1_uc001rmo.2_Missense_Mutation_p.A440V	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	440	Ig-like C2-type 5.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				AAACCTAAAGCTGCACCGAAA	0.403													3	7					0	0	0.000248	0	0
SLC38A1	81539	broad.mit.edu	37	12	46623362	46623362	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:46623362C>T	uc001rpa.2	-	4	441	c.183G>A	c.(181-183)AAG>AAA	p.K61K	SLC38A1_uc001rpb.2_Silent_p.K61K|SLC38A1_uc001rpc.2_Silent_p.K61K|SLC38A1_uc001rpd.2_Silent_p.K61K|SLC38A1_uc001rpe.2_Silent_p.K61K|SLC38A1_uc010slh.1_Silent_p.K34K|SLC38A1_uc009zkj.1_Silent_p.K61K	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	61	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			CATCACACTTCTTTTTTTCCA	0.284													21	40					0	0	0.001523	0	0
FAM113B	91523	broad.mit.edu	37	12	47629311	47629311	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:47629311C>T	uc001rpn.2	+	4	1196	c.465C>T	c.(463-465)CCC>CCT	p.P155P	FAM113B_uc010slj.1_Silent_p.P35P|FAM113B_uc001rpq.2_Silent_p.P155P	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	155							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					AGGTGCTGCCCGAGTCTTGCC	0.622													7	55					0	0	0.004482	0	0
GALNT6	11226	broad.mit.edu	37	12	51759262	51759262	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:51759262C>T	uc001ryk.2	-	4	991	c.766G>A	c.(766-768)GGG>AGG	p.G256R	GALNT6_uc009zma.1_RNA|GALNT6_uc001ryl.1_Missense_Mutation_p.G256R	NM_007210	NP_009141	Q8NCL4	GALT6_HUMAN	polypeptide N-acetylgalactosaminyltransferase 6	256	Catalytic subdomain A.|Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|integral to membrane|perinuclear region of cytoplasm	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						ACGCTGGCCCCCAGCAGCCGG	0.662													26	26					0	0	0.006320	0	0
SCN8A	6334	broad.mit.edu	37	12	52159762	52159763	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:52159762_52159763CC>TT	uc001ryw.2	+	16	3030_3031	c.2852_2853CC>TT	c.(2851-2853)GCC>GTT	p.A951V	SCN8A_uc010snl.1_Missense_Mutation_p.A816V|SCN8A_uc001ryy.2_Missense_Mutation_p.A816V	NM_014191	NP_055006	Q9UQD0	SCN8A_HUMAN	sodium channel, voltage gated, type VIII, alpha	951	II.				axon guidance|myelination|peripheral nervous system development	cytoplasmic membrane-bounded vesicle|node of Ranvier	ATP binding|voltage-gated sodium channel activity			ovary(7)	7				BRCA - Breast invasive adenocarcinoma(357;0.181)	Lamotrigine(DB00555)	GCAGGCCAGGCCATGTGCCTCA	0.45													71	100					0	0	0.004672	0	0
KRT72	140807	broad.mit.edu	37	12	52981604	52981604	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:52981604G>A	uc001sar.2	-	7	1207	c.1121C>T	c.(1120-1122)GCT>GTT	p.A374V	KRT72_uc001saq.2_Missense_Mutation_p.A374V|KRT72_uc010sns.1_Missense_Mutation_p.A332V|KRT72_uc010snt.1_Missense_Mutation_p.A186V	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	374	Coil 2.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		CCGCTGTTCAGCGTCGGCGAT	0.627													5	15					0	0	0.001168	0	0
OR6C1	390321	broad.mit.edu	37	12	55715172	55715172	+	Missense_Mutation	SNP	A	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:55715172A>T	uc010spi.1	+	1	789	c.789A>T	c.(787-789)AAA>AAT	p.K263N		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						CCTCAGCAAAAGATAGAGTGT	0.443													14	13					0	0	0.001855	0	0
OR6C3	254786	broad.mit.edu	37	12	55726246	55726246	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:55726246C>T	uc010spj.1	+	1	762	c.762C>T	c.(760-762)TTC>TTT	p.F254F		NM_054104	NP_473445	Q9NZP0	OR6C3_HUMAN	olfactory receptor, family 6, subfamily C,	254	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GCTGTATATTCATGTATGCTA	0.388													4	14					0	0	0.000248	0	0
GLIPR1	11010	broad.mit.edu	37	12	75875727	75875727	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:75875727G>A	uc001sxs.2	+	2	436	c.288G>A	c.(286-288)CTG>CTA	p.L96L	GLIPR1_uc009zsb.1_Silent_p.L96L	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	96					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						TCACTTCACTGGGAGAGAACA	0.488													24	28					0	0	0.003330	0	0
TMTC3	160418	broad.mit.edu	37	12	88547269	88547269	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:88547269C>T	uc001tau.2	+	3	611	c.391C>T	c.(391-393)CCA>TCA	p.P131S	TMTC3_uc009zsm.2_RNA	NM_181783	NP_861448	Q6ZXV5	TMTC3_HUMAN	transmembrane and tetratricopeptide repeat	131						integral to membrane	binding			skin(1)	1						TGCAGTGCACCCAATACATAC	0.313													11	8					0	0	0.000978	0	0
STAB2	55576	broad.mit.edu	37	12	104049234	104049234	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:104049234G>A	uc001tjw.2	+	15	1795	c.1609G>A	c.(1609-1611)GAA>AAA	p.E537K		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	537	Extracellular (Potential).|FAS1 2.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCAAATGCAGGAAACCAATTT	0.378													17	31					0	0	0.004007	0	0
SSH1	54434	broad.mit.edu	37	12	109182779	109182779	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:109182779G>A	uc001tnm.2	-	15	2222	c.2135C>T	c.(2134-2136)CCC>CTC	p.P712L	SSH1_uc001tnl.2_Missense_Mutation_p.P400L	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	712					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						TAGGAACGGGGGAGGTTCGGT	0.657													5	57					0	0	0.001168	0	0
CUX2	23316	broad.mit.edu	37	12	111785456	111785456	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:111785456C>T	uc001tsa.1	+	22	3941	c.3788C>T	c.(3787-3789)TCT>TTT	p.S1263F		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1263						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						AGCCCTGACTCTGAGACTGAG	0.637													20	24					0	0	0.001523	0	0
STX2	2054	broad.mit.edu	37	12	131283119	131283119	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:131283119G>A	uc001uio.2	-	9	904	c.737C>T	c.(736-738)GCT>GTT	p.A246V	STX2_uc001uip.2_Missense_Mutation_p.A246V|STX2_uc010tbj.1_Missense_Mutation_p.A246V	NM_194356	NP_919337	P32856	STX2_HUMAN	syntaxin 2 isoform 2	246	t-SNARE coiled-coil homology.|Cytoplasmic (Potential).				acrosome reaction|ectoderm development|intracellular protein transport|organ morphogenesis|signal transduction	basolateral plasma membrane|integral to membrane|microsome|soluble fraction	calcium-dependent protein binding|SNAP receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.79e-06)|all cancers(50;5.27e-05)|Epithelial(86;5.29e-05)		TTCTTCTTTAGCGTGTTCTAC	0.338													24	88					0	0	0.005443	0	0
SFRS8	6433	broad.mit.edu	37	12	132209970	132209970	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:132209970C>T	uc001uja.1	+	5	767	c.627C>T	c.(625-627)CAC>CAT	p.H209H	SFRS8_uc010tbn.1_Silent_p.H209H|SFRS8_uc001ujb.1_Silent_p.H2H|SFRS8_uc001uiz.1_Silent_p.H83H	NM_004592	NP_004583	Q12872	SFSWA_HUMAN	splicing factor, arginine/serine-rich 8	209					mRNA splice site selection|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|RNA binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.44e-07)|Epithelial(86;2.94e-06)|all cancers(50;4.82e-05)		CTAAAATGCACGCCATCATCG	0.517													9	42					0	0	0.000978	0	0
PSPC1	55269	broad.mit.edu	37	13	20279916	20279916	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr13:20279916C>T	uc001uml.2	-	8	1458	c.1272G>A	c.(1270-1272)ATG>ATA	p.M424I	PSPC1_uc001umj.1_Intron|PSPC1_uc001umk.1_Intron	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	424	Gly-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TGTTCATATTCATACCCATCA	0.483													13	79					0	0	0.003163	0	0
NBEA	26960	broad.mit.edu	37	13	35619123	35619123	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr13:35619123G>A	uc001uvb.2	+	4	772	c.566G>A	c.(565-567)AGC>AAC	p.S189N		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	189						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCCAGCTACAGCATCACTGTC	0.433													4	8					0	0	0.000248	0	0
SPG20	23111	broad.mit.edu	37	13	36909411	36909411	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr13:36909411G>A	uc001uvn.2	-	3	827	c.557C>T	c.(556-558)TCC>TTC	p.S186F	SPG20_uc010ten.1_Missense_Mutation_p.S186F|SPG20_uc001uvm.2_Missense_Mutation_p.S186F|SPG20_uc001uvo.2_Missense_Mutation_p.S186F|SPG20_uc001uvq.2_Missense_Mutation_p.S186F|SPG20_uc001uvp.2_Missense_Mutation_p.S186F	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	186					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		TGTTCCATAGGATACAGTGTA	0.478													9	20					0	0	0.000978	0	0
LIG4	3981	broad.mit.edu	37	13	108861056	108861056	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr13:108861056G>A	uc001vqn.2	-	2	2834	c.2561C>T	c.(2560-2562)TCT>TTT	p.S854F	LIG4_uc001vqo.2_Missense_Mutation_p.S854F|LIG4_uc010agg.1_Missense_Mutation_p.S787F|LIG4_uc010agf.2_Missense_Mutation_p.S854F|LIG4_uc001vqp.2_Missense_Mutation_p.S854F	NM_002312	NP_002303	P49917	DNLI4_HUMAN	DNA ligase IV	854	BRCT 2.				cell cycle|cell division|cell proliferation|central nervous system development|chromosome organization|DNA ligation involved in DNA recombination|DNA ligation involved in DNA repair|DNA replication|double-strand break repair via nonhomologous end joining|in utero embryonic development|initiation of viral infection|isotype switching|negative regulation of neuron apoptosis|neuron apoptosis|nucleotide-excision repair, DNA gap filling|positive regulation of fibroblast proliferation|positive regulation of neurogenesis|pro-B cell differentiation|provirus integration|response to gamma radiation|response to X-ray|single strand break repair|somatic stem cell maintenance|T cell differentiation in thymus|T cell receptor V(D)J recombination	condensed chromosome|cytoplasm|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|focal adhesion|nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding|protein C-terminus binding				0	all_lung(23;0.000238)|all_neural(89;0.00256)|Lung NSC(43;0.0056)|Medulloblastoma(90;0.00596)|Lung SC(71;0.104)					AGCTAAACAAGAAACTACTTT	0.373								NHEJ					19	31					0	0	0.002299	0	0
NFATC4	4776	broad.mit.edu	37	14	24838810	24838810	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:24838810C>T	uc001wpc.2	+	2	527	c.206C>T	c.(205-207)CCT>CTT	p.P69L	NFATC4_uc010tok.1_Missense_Mutation_p.P132L|NFATC4_uc010tol.1_Missense_Mutation_p.P132L|NFATC4_uc010alr.2_Missense_Mutation_p.P132L|NFATC4_uc010als.2_Missense_Mutation_p.P82L|NFATC4_uc010tom.1_Missense_Mutation_p.P82L|NFATC4_uc010ton.1_Missense_Mutation_p.P82L|NFATC4_uc010too.1_Missense_Mutation_p.P82L|NFATC4_uc010alt.2_Missense_Mutation_p.P101L|NFATC4_uc010top.1_Missense_Mutation_p.P101L|NFATC4_uc010toq.1_Missense_Mutation_p.P101L|NFATC4_uc010alu.2_Missense_Mutation_p.P69L|NFATC4_uc010tor.1_Missense_Mutation_p.P69L|NFATC4_uc010tos.1_5'UTR|NFATC4_uc010tot.1_Missense_Mutation_p.P57L|NFATC4_uc010tou.1_5'UTR|NFATC4_uc010tov.1_Missense_Mutation_p.P57L|NFATC4_uc010tow.1_5'UTR|NFATC4_uc010alv.2_Missense_Mutation_p.P57L|NFATC4_uc010tox.1_5'UTR	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	69	Pro-rich.				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CCCCCTCGGCCTGGCATGCAT	0.667													11	40					0	0	0.001368	0	0
SDCCAG1	9147	broad.mit.edu	37	14	50267277	50267277	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:50267277C>T	uc001wxc.2	-	23	2301	c.2233G>A	c.(2233-2235)GAA>AAA	p.E745K	SDCCAG1_uc010anj.1_Missense_Mutation_p.E745K|SDCCAG1_uc001wwz.2_5'Flank|SDCCAG1_uc001wxa.2_Missense_Mutation_p.E25K|SDCCAG1_uc010tqi.1_Missense_Mutation_p.E724K|SDCCAG1_uc001wxe.2_Missense_Mutation_p.E703K|SDCCAG1_uc001wxd.1_Missense_Mutation_p.E150K	NM_004713	NP_004704	O60524	NEMF_HUMAN	serologically defined colon cancer antigen 1	745						cytoplasm|nucleus					0	all_epithelial(31;0.000822)|Breast(41;0.0117)	all_lung(585;1.02e-05)		OV - Ovarian serous cystadenocarcinoma(311;5.99e-34)		GAGCTTTCTTCCTGAATGAGC	0.413													8	40					0	0	0.004482	0	0
PELI2	57161	broad.mit.edu	37	14	56763440	56763440	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:56763440C>T	uc001xch.2	+	6	1105	c.819C>T	c.(817-819)CTC>CTT	p.L273L		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	273					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						TAGAAGCCCTCCGGCAGGAGA	0.587													4	23					0	0	0.000602	0	0
C14orf50	145376	broad.mit.edu	37	14	65041199	65041199	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:65041199A>G	uc001xhl.1	+	8	656	c.560A>G	c.(559-561)GAA>GGA	p.E187G		NM_172365	NP_758953	Q96LQ0	CN050_HUMAN	hypothetical protein LOC145376	187										skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.00382)|all cancers(60;0.00427)|BRCA - Breast invasive adenocarcinoma(234;0.0488)		AAAGAAATGGAATTGGTTTTA	0.423													10	34					0	0	0.000978	0	0
FNTB	2342	broad.mit.edu	37	14	65390804	65390804	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:65390804C>T	uc010tsl.1	+	2	209	c.135C>T	c.(133-135)TCC>TCT	p.S45S	CHURC1_uc010tsj.1_Silent_p.S45S|CHURC1_uc010tsk.1_RNA|FNTB_uc010tsm.1_5'UTR|CHURC1_uc001xhv.1_Silent_p.S45S|CHURC1_uc001xhw.1_Silent_p.S45S	NM_002028	NP_002019	P49356	FNTB_HUMAN	farnesyltransferase, CAAX box, beta	183	PFTB 2.				protein farnesylation	microtubule associated complex	protein binding|protein farnesyltransferase activity			ovary(1)	1				all cancers(60;0.00115)|OV - Ovarian serous cystadenocarcinoma(108;0.00412)|BRCA - Breast invasive adenocarcinoma(234;0.011)		CAAACAAATCCTTGAAAGAAG	0.393													4	15					0	0	0.000602	0	0
SLC8A3	6547	broad.mit.edu	37	14	70517766	70517766	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:70517766G>A	uc001xly.2	-	6	2844	c.2090C>T	c.(2089-2091)TCC>TTC	p.S697F	SLC8A3_uc001xlu.2_Missense_Mutation_p.S54F|SLC8A3_uc001xlv.2_Missense_Mutation_p.S68F|SLC8A3_uc001xlw.2_Missense_Mutation_p.S694F|SLC8A3_uc001xlx.2_Missense_Mutation_p.S695F|SLC8A3_uc001xlz.2_Missense_Mutation_p.S691F|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_Missense_Mutation_p.S54F	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	697	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GTCCCTCCAGGAATGGGTCCC	0.522													7	25					0	0	0.004482	0	0
C14orf166B	145497	broad.mit.edu	37	14	77319733	77319733	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:77319733G>A	uc001xsx.2	+	9	1102	c.988G>A	c.(988-990)GAA>AAA	p.E330K	C14orf166B_uc010asn.1_Missense_Mutation_p.E90K|C14orf166B_uc001xsw.2_RNA|C14orf166B_uc010tvg.1_RNA|C14orf166B_uc010tvh.1_RNA	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	330											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		GGAATCCAATGAAAGCCTCAG	0.408													6	17					0	0	0.001168	0	0
VIPAR	63894	broad.mit.edu	37	14	77901669	77901669	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:77901669G>A	uc001xtt.1	-	15	1318	c.980C>T	c.(979-981)TCC>TTC	p.S327F	VIPAR_uc001xtu.1_Missense_Mutation_p.S327F|VIPAR_uc010tvj.1_Missense_Mutation_p.S278F|VIPAR_uc001xtv.1_Missense_Mutation_p.S327F	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	327					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						GTTGAGGATGGAGGCTTTGCG	0.463													9	52					0	0	0.004482	0	0
PTPN21	11099	broad.mit.edu	37	14	88946268	88946268	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:88946268G>A	uc001xwv.3	-	13	1838	c.1507C>T	c.(1507-1509)CCC>TCC	p.P503S	PTPN21_uc010twc.1_Missense_Mutation_p.P299S	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	503						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						GCTGGCGAGGGGAGCTGTGCG	0.701													9	30					0	0	0.006214	0	0
WDR25	79446	broad.mit.edu	37	14	100934432	100934432	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:100934432G>A	uc010avx.2	+	3	990	c.897G>A	c.(895-897)CGG>CGA	p.R299R	WDR25_uc001yhm.2_Silent_p.R291R|WDR25_uc001yhn.2_Silent_p.R299R|WDR25_uc010avy.2_Intron|WDR25_uc001yho.2_Silent_p.R42R	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	299	WD 2.										0		Melanoma(154;0.212)				GGGCCGCCCGGTGGGCTCCCT	0.627													24	80					0	0	0.005443	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409088	105409088	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:105409088G>A	uc010axc.1	-	7	12820	c.12700C>T	c.(12700-12702)CCC>TCC	p.P4234S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P4134S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4234						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TCCACCTGGGGGCCCTTGAGG	0.652													19	77					0	0	0.002299	0	0
ADAM6	8755	broad.mit.edu	37	14	106237643	106237643	+	RNA	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:106237643G>A	uc010tyt.1	-	3611		c.57240C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CACCGGTTCTGGGAAGTAGTC	0.667													6	16					0	0	0.001168	0	0
ADAM6	8755	broad.mit.edu	37	14	106641622	106641622	+	RNA	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr14:106641622C>T	uc010tyt.1	-	1021		c.24379G>A								Parts of antibodies, mostly variable regions.												0						TCCATGTAGGCTGTGCTCGTG	0.522													18	68					0	0	0.007413	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414138	22414138	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:22414138G>A	uc001yuf.2	+	1	437	c.437G>A	c.(436-438)CGA>CAA	p.R146Q		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TGTCGCATACGAGCGTCTTCT	0.463													10	36					0	0	0.006214	0	0
HERC2	8924	broad.mit.edu	37	15	28502277	28502277	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:28502277G>A	uc001zbj.2	-	17	2553	c.2447C>T	c.(2446-2448)TCC>TTC	p.S816F	HERC2_uc001zbl.1_Missense_Mutation_p.S511F	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	816					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCAGTCCGCGGAACCATCCAT	0.552													20	52					0	0	0.007413	0	0
SLC12A6	9990	broad.mit.edu	37	15	34531303	34531303	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:34531303G>A	uc001zhw.2	-	19	2659	c.2495C>T	c.(2494-2496)GCC>GTC	p.A832V	SLC12A6_uc001zhv.2_Missense_Mutation_p.A781V|SLC12A6_uc001zhx.2_Missense_Mutation_p.A817V|SLC12A6_uc001zhy.2_RNA|SLC12A6_uc001zhz.2_RNA|SLC12A6_uc001zia.2_Missense_Mutation_p.A773V|SLC12A6_uc001zib.2_Missense_Mutation_p.A823V|SLC12A6_uc001zic.2_Missense_Mutation_p.A832V|SLC12A6_uc010bau.2_Missense_Mutation_p.A832V|SLC12A6_uc001zid.2_Missense_Mutation_p.A773V|SLC12A6_uc001zht.2_RNA|SLC12A6_uc001zhu.2_Missense_Mutation_p.A644V	NM_133647	NP_598408	Q9UHW9	S12A6_HUMAN	solute carrier family 12, member 6 isoform a	832					angiogenesis|cellular hypotonic salinity response|potassium ion transport|sodium ion transport	basolateral plasma membrane|integral to membrane	potassium:chloride symporter activity			central_nervous_system(5)|ovary(1)|skin(1)	7		all_lung(180;2.78e-08)		all cancers(64;3.43e-17)|GBM - Glioblastoma multiforme(113;2.6e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0301)	Potassium Chloride(DB00761)	CAGCTTGGCGGCCACCACCAG	0.552													50	100					0	0	0.003610	0	0
RASGRP1	10125	broad.mit.edu	37	15	38808488	38808488	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:38808488C>T	uc001zke.3	-	6	763	c.585G>A	c.(583-585)CGG>CGA	p.R195R	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Silent_p.R57R|RASGRP1_uc010bbg.2_Silent_p.R57R|RASGRP1_uc001zkd.3_Silent_p.R195R	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	195					cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		GGGAGACTTTCCGTTTCTTGC	0.463													9	25					0	0	0.004482	0	0
SLC27A2	11001	broad.mit.edu	37	15	50518184	50518184	+	Splice_Site	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:50518184G>A	uc001zxw.2	+	6	1400	c.1168_splice	c.e6-1	p.K390_splice	SLC27A2_uc010bes.2_Splice_Site_p.K337_splice|SLC27A2_uc001zxx.2_Splice_Site_p.K155_splice	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid						bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		AATCTTGCTAGAAAATCATAA	0.239													9	12					0	0	0.004482	0	0
CYP19A1	1588	broad.mit.edu	37	15	51504711	51504711	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:51504711C>T	uc001zyz.3	-	10	1320	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	CYP19A1_uc001zza.3_Missense_Mutation_p.E357K|CYP19A1_uc001zzb.2_Missense_Mutation_p.E357K	NM_031226	NP_112503	P11511	CP19A_HUMAN	cytochrome P450, family 19	357					estrogen biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|membrane fraction	aromatase activity|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(3)	3				all cancers(107;0.000372)|GBM - Glioblastoma multiforme(94;0.0128)	Aminoglutethimide(DB00357)|Anastrozole(DB01217)|Conjugated Estrogens(DB00286)|Danazol(DB01406)|Diethylstilbestrol(DB00255)|Exemestane(DB00990)|Letrozole(DB01006)|Testolactone(DB00894)|Testosterone(DB00624)	ATGAAGTTTTCCATCACTTTT	0.388													13	13					0	0	0.001855	0	0
PRTG	283659	broad.mit.edu	37	15	55965814	55965814	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:55965814G>A	uc002adg.2	-	10	1655	c.1607C>T	c.(1606-1608)TCC>TTC	p.S536F	PRTG_uc002adh.2_Missense_Mutation_p.S38F	NM_173814	NP_776175	Q2VWP7	PRTG_HUMAN	protogenin precursor	536	Fibronectin type-III 2.				multicellular organismal development	integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3				all cancers(107;0.00891)|GBM - Glioblastoma multiforme(80;0.135)		TGGCAGCCAGGAGATGAGAAT	0.448													23	46					0	0	0.003330	0	0
DIS3L	115752	broad.mit.edu	37	15	66624337	66624337	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:66624337G>A	uc010ujm.1	+	15	2675	c.2660G>A	c.(2659-2661)GGT>GAT	p.G887D	DIS3L_uc002app.2_Missense_Mutation_p.G804D|DIS3L_uc010bho.2_Missense_Mutation_p.G753D	NM_001143688	NP_001137160	Q8TF46	DI3L1_HUMAN	DIS3 mitotic control homolog (S.	887					rRNA catabolic process	cytoplasm|exosome (RNase complex)	exonuclease activity|protein binding|ribonuclease activity|RNA binding			ovary(2)	2						AGAACAAATGGTGTGCTTCTA	0.363													16	78					0	0	0.001523	0	0
C15orf27	123591	broad.mit.edu	37	15	76494550	76494550	+	Silent	SNP	G	A	A	rs138438508		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:76494550G>A	uc002bbq.2	+	10	1121	c.966G>A	c.(964-966)ACG>ACA	p.T322T	C15orf27_uc010bkp.2_Silent_p.T138T|C15orf27_uc002bbr.2_Silent_p.T138T|C15orf27_uc002bbs.2_5'UTR	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	322						integral to membrane					0						TAGAAGCCACGATGAAGGACG	0.532													26	36					0	0	0.004656	0	0
KIAA1024	23251	broad.mit.edu	37	15	79749811	79749811	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr15:79749811C>T	uc002bew.1	+	2	1397	c.1322C>T	c.(1321-1323)TCA>TTA	p.S441L	KIAA1024_uc010unk.1_Missense_Mutation_p.S441L	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	441						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						AAAGAGATCTCATCCCCTGTT	0.478													6	22					0	0	0.001168	0	0
TELO2	9894	broad.mit.edu	37	16	1544321	1544322	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:1544321_1544322GG>AA	uc002cly.2	+	2	330_331	c.39_40GG>AA	c.(37-42)CGGGAA>CGAAAA	p.E14K	TELO2_uc010uvg.1_Missense_Mutation_p.E14K	NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	14						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				TCGCCGTCCGGGAAGCCATTCA	0.619											OREG0023547	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	34					0	0	0.004672	0	0
HN1L	90861	broad.mit.edu	37	16	1747840	1747840	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:1747840G>A	uc002cmg.2	+	4	400	c.364G>A	c.(364-366)GAA>AAA	p.E122K	HN1L_uc010uvi.1_Missense_Mutation_p.E150K|HN1L_uc010brt.2_RNA|HN1L_uc010bru.2_3'UTR|HN1L_uc010uvj.1_3'UTR|HN1L_uc010uvk.1_Missense_Mutation_p.E109K	NM_144570	NP_653171	Q9H910	HN1L_HUMAN	hematological and neurological expressed 1-like	122						cytoplasm|nucleus				upper_aerodigestive_tract(1)	1						TGAAGGAGAAGAACCAAAATC	0.403													28	64					0	0	0.001786	0	0
ZC3H7A	29066	broad.mit.edu	37	16	11862319	11862319	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:11862319G>A	uc002dbk.2	-	11	1410	c.1212C>T	c.(1210-1212)TTC>TTT	p.F404F	ZC3H7A_uc002dbj.2_5'Flank|ZC3H7A_uc002dbl.2_Silent_p.F404F|ZC3H7A_uc002dbm.1_Silent_p.F314F	NM_014153	NP_054872	Q8IWR0	Z3H7A_HUMAN	zinc finger CCCH-type containing 7A	404						nucleus	nucleic acid binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AAATTCCCAGGAAATTCTCTG	0.368													15	40					0	0	0.003163	0	0
DNAH3	55567	broad.mit.edu	37	16	21122990	21122990	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:21122990G>A	uc010vbe.1	-	14	2056	c.2056C>T	c.(2056-2058)CTG>TTG	p.L686L	DNAH3_uc002die.2_Silent_p.L626L	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	686	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AATTGAATCAGATGGTCTTTA	0.438													4	29					0	0	0.000602	0	0
ZKSCAN2	342357	broad.mit.edu	37	16	25255331	25255331	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:25255331G>A	uc002dod.3	-	6	2163	c.1756C>T	c.(1756-1758)CGG>TGG	p.R586W	ZKSCAN2_uc010vcl.1_Missense_Mutation_p.R382W	NM_001012981	NP_001012999	Q63HK3	ZKSC2_HUMAN	zinc finger with KRAB and SCAN domains 2	586					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|breast(1)	4				GBM - Glioblastoma multiforme(48;0.0378)		GCAGATGCCCGAGAGTTAATC	0.532													13	30					0	0	0.001855	0	0
FAM57B	83723	broad.mit.edu	37	16	30037049	30037049	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:30037049G>A	uc002dvt.2	-	4	876	c.538C>T	c.(538-540)CAG>TAG	p.Q180*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|FAM57B_uc002dvu.2_Nonsense_Mutation_p.Q130*	NM_031478	NP_113666	Q71RH2	FA57B_HUMAN	hypothetical protein LOC83723	180	TLC.					endoplasmic reticulum|integral to membrane					0						TCACTCACCTGGATGAGGATC	0.592													39	80					0	0	0.002852	0	0
CNOT1	23019	broad.mit.edu	37	16	58576341	58576341	+	Silent	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:58576341T>C	uc002env.2	-	32	4859	c.4566A>G	c.(4564-4566)AGA>AGG	p.R1522R	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Silent_p.R1517R|CNOT1_uc010vik.1_Silent_p.R479R	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1522					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		CAGTTGCTAATCTCTTGTCCA	0.378													30	41					0	0	0.007291	0	0
HYDIN	54768	broad.mit.edu	37	16	70954932	70954932	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:70954932G>A	uc002ezr.2	-	46	7472	c.7344C>T	c.(7342-7344)CCC>CCT	p.P2448P		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2449										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GTTGCTTGTCGGGGTCCTTTG	0.507													10	18					0	0	0.007413	0	0
JPH3	57338	broad.mit.edu	37	16	87678398	87678398	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:87678398C>T	uc002fkd.2	+	2	1171	c.917C>T	c.(916-918)TCG>TTG	p.S306L	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	306	Cytoplasmic (Potential).|MORN 7.				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		AGCCAGCGCTCGGACGGGCTC	0.657													9	30					0	0	0.006214	0	0
SPG7	6687	broad.mit.edu	37	16	89614441	89614441	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:89614441C>T	uc002fnj.2	+	12	1604	c.1583C>T	c.(1582-1584)GCT>GTT	p.A528V	SPG7_uc002fnk.1_RNA|SPG7_uc002fnl.2_5'Flank	NM_003119	NP_003110	Q9UQ90	SPG7_HUMAN	spastic paraplegia 7 isoform 1	528	Mitochondrial matrix (Potential).				cell death|nervous system development|protein catabolic process|proteolysis	integral to membrane|mitochondrial membrane	ATP binding|metalloendopeptidase activity|nucleoside-triphosphatase activity|unfolded protein binding|zinc ion binding				0		all_hematologic(23;0.00824)|Colorectal(91;0.102)		all cancers(4;1.39e-07)|OV - Ovarian serous cystadenocarcinoma(4;5.64e-06)|BRCA - Breast invasive adenocarcinoma(80;0.015)		TGCAATGAGGCTGCGCTGCAC	0.637													36	75					0	0	0.002222	0	0
PRPF8	10594	broad.mit.edu	37	17	1585565	1585565	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:1585565C>T	uc002fte.2	-	4	406	c.292G>A	c.(292-294)GCA>ACA	p.A98T		NM_006445	NP_006436	Q6P2Q9	PRP8_HUMAN	U5 snRNP-specific protein	98						catalytic step 2 spliceosome|nuclear speck|U5 snRNP	protein binding|RNA binding			lung(4)|ovary(2)	6				UCEC - Uterine corpus endometrioid carcinoma (25;0.0855)		TTGAGGACTGCGTGGGGCATG	0.507													16	54					0	0	0.008871	0	0
OR1G1	8390	broad.mit.edu	37	17	3030585	3030585	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:3030585G>A	uc002fvc.1	-	1	261	c.261C>T	c.(259-261)ATC>ATT	p.I87I		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCTGACTCTGGATCTGTATGT	0.483													19	23					0	0	0.007413	0	0
P2RX5	5026	broad.mit.edu	37	17	3583028	3583028	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:3583028C>T	uc002fwi.2	-	11	1399	c.1115G>A	c.(1114-1116)GGG>GAG	p.G372E	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Missense_Mutation_p.G371E|P2RX5_uc010vrx.1_Missense_Mutation_p.G312E|P2RX5_uc002fwj.2_Missense_Mutation_p.G347E|P2RX5_uc002fwk.2_Missense_Mutation_p.G371E|P2RX5_uc002fwl.2_Missense_Mutation_p.G348E	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	372	Cytoplasmic (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						CTCAGATAGCCCCAGCCCCGA	0.657													5	26					0	0	0.001168	0	0
P2RX5	5026	broad.mit.edu	37	17	3593971	3593971	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:3593971C>T	uc002fwi.2	-	4	648	c.364G>A	c.(364-366)GAA>AAA	p.E122K	P2RX5_uc002fwd.2_RNA|P2RX5_uc002fwh.1_Missense_Mutation_p.E122K|P2RX5_uc010vrx.1_Missense_Mutation_p.E62K|P2RX5_uc002fwj.2_Missense_Mutation_p.E98K|P2RX5_uc002fwk.2_Missense_Mutation_p.E122K|P2RX5_uc002fwl.2_Missense_Mutation_p.E98K|P2RX5_uc002fwm.1_Missense_Mutation_p.E122K	NM_002561	NP_002552	Q93086	P2RX5_HUMAN	purinergic receptor P2X5 isoform A	122	Extracellular (Potential).				nervous system development|positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling	integral to plasma membrane	ATP binding|extracellular ATP-gated cation channel activity|purinergic nucleotide receptor activity				0						GGAATGCCTTCATTCTGCCAG	0.637													9	32					0	0	0.006214	0	0
MYH8	4626	broad.mit.edu	37	17	10300150	10300150	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:10300150G>A	uc002gmm.2	-	31	4427	c.4332C>T	c.(4330-4332)GCC>GCT	p.A1444A	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1444	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCTTATCAAGGGCTGCACAGG	0.463									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				17	34					0	0	0.006122	0	0
MYH4	4622	broad.mit.edu	37	17	10364279	10364279	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:10364279G>A	uc002gmn.2	-	12	1212	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	367	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCTTTTGCTTGAATTTCATGT	0.478													23	36					0	0	0.003954	0	0
MYH2	4620	broad.mit.edu	37	17	10431190	10431190	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:10431190C>T	uc010coi.2	-	28	3874	c.3746G>A	c.(3745-3747)GGA>GAA	p.G1249E	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G1249E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1249	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTCTAGGTTTCCCTATAGAAG	0.403													11	29					0	0	0.008291	0	0
DNAH9	1770	broad.mit.edu	37	17	11757400	11757400	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:11757400G>A	uc002gne.2	+	50	9656	c.9588G>A	c.(9586-9588)ATG>ATA	p.M3196I	DNAH9_uc010coo.2_Missense_Mutation_p.M2490I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3196	Stalk (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		TGGTACTGATGGCTCCCAGGG	0.562													9	30					0	0	0.004482	0	0
DNAH9	1770	broad.mit.edu	37	17	11797735	11797735	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:11797735C>T	uc002gne.2	+	59	11396	c.11328C>T	c.(11326-11328)TTC>TTT	p.F3776F	DNAH9_uc010coo.2_Silent_p.F3070F|DNAH9_uc002gnf.2_Silent_p.F88F|DNAH9_uc010vvh.1_Silent_p.F129F	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3776					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AGTTGGATTTCCTGCTTCGAT	0.512													13	52					0	0	0.002450	0	0
MYOCD	93649	broad.mit.edu	37	17	12626254	12626254	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:12626254G>A	uc002gnn.2	+	5	643	c.344G>A	c.(343-345)CGA>CAA	p.R115Q	MYOCD_uc002gno.2_Missense_Mutation_p.R115Q|MYOCD_uc002gnp.1_Missense_Mutation_p.R19Q	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	115	RPEL 3.				cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		ATTGCTCTACGACCAGGGCCA	0.468													22	102					0	0	0.002299	0	0
LOC162632	162632	broad.mit.edu	37	17	16699419	16699419	+	RNA	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:16699419G>A	uc010cpj.1	+	17		c.3957G>A			LOC162632_uc010cpk.1_RNA|LOC162632_uc010vwq.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						CCATCAACCTGGACAGCTGTC	0.542													13	44					0	0	0.001855	0	0
RAB34	83871	broad.mit.edu	37	17	27042098	27042098	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:27042098C>T	uc002hce.2	-	8	1180	c.556G>A	c.(556-558)GTG>ATG	p.V186M	RAB34_uc002hcg.2_Missense_Mutation_p.V178M|RAB34_uc002hcf.2_Missense_Mutation_p.V187M|RAB34_uc010was.1_Missense_Mutation_p.V243M|RAB34_uc010wat.1_Missense_Mutation_p.V235M|RAB34_uc002hch.2_Missense_Mutation_p.V186M|RAB34_uc010wau.1_Missense_Mutation_p.V164M|RAB34_uc010wav.1_Missense_Mutation_p.V244M	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1	186					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					TCCTGGGCCACCTGGAGGGCG	0.602													10	40					0	0	0.000978	0	0
SEZ6	124925	broad.mit.edu	37	17	27284987	27284987	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:27284987C>T	uc002hdp.2	-	11	2474	c.2280G>A	c.(2278-2280)GAG>GAA	p.E760E	SEZ6_uc010crx.1_5'Flank|SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Silent_p.E760E|SEZ6_uc002hdq.1_Silent_p.E635E	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	760	Extracellular (Potential).|Sushi 3.					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			AGGGCAGGTCCTCACTCCAAG	0.463													7	19					0	0	0.003080	0	0
ABHD15	116236	broad.mit.edu	37	17	27893573	27893573	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:27893573C>T	uc002hed.1	-	1	476	c.412G>A	c.(412-414)GAC>AAC	p.D138N	TP53I13_uc002hee.2_5'Flank	NM_198147	NP_937790	Q6UXT9	ABH15_HUMAN	abhydrolase domain containing 15 precursor	138						extracellular region	carboxylesterase activity				0						ACCACCCAGTCCAGGGCCACT	0.687													4	15					0	0	0.000248	0	0
SSH2	85464	broad.mit.edu	37	17	27994162	27994162	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:27994162T>C	uc002heo.1	-	9	808	c.808A>G	c.(808-810)ATT>GTT	p.I270V	SSH2_uc010wbh.1_Missense_Mutation_p.I297V|SSH2_uc002hep.1_Missense_Mutation_p.I270V	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	270					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						TTGGATGTAATATTCTCCAAA	0.418													11	18					0	0	0.001368	0	0
LRRC37B	114659	broad.mit.edu	37	17	30376191	30376191	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:30376191C>T	uc002hgu.2	+	10	2465	c.2454C>T	c.(2452-2454)TTC>TTT	p.F818F	LRRC37B_uc010wbx.1_Silent_p.F736F|LRRC37B_uc010csu.2_Silent_p.F767F	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	818	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				TGAGAAAGTTCATGTCTCATG	0.498													24	22					0	0	0.006320	0	0
MMP28	79148	broad.mit.edu	37	17	34105972	34105972	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:34105972G>C	uc002hjy.1	-	3	558	c.299C>G	c.(298-300)GCG>GGG	p.A100G	MMP28_uc002hjw.1_RNA|MMP28_uc002hjz.1_RNA|MMP28_uc002hka.2_Missense_Mutation_p.A100G	NM_024302	NP_077278	Q9H239	MMP28_HUMAN	matrix metalloproteinase 28 isoform 1	100					proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		AGCCCAGGCCGCATAACTGTT	0.567													8	45					0	0	0.004482	0	0
PPP1R1B	84152	broad.mit.edu	37	17	37791921	37791921	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:37791921G>A	uc002hrz.2	+	6	974	c.507G>A	c.(505-507)CTG>CTA	p.L169L	PPP1R1B_uc002hsa.2_Silent_p.L180L|PPP1R1B_uc010cvx.2_Silent_p.L136L|PPP1R1B_uc002hsb.2_Silent_p.L133L|PPP1R1B_uc002hsc.2_Silent_p.L133L|STARD3_uc010weg.1_5'Flank|STARD3_uc002hsd.2_5'Flank|STARD3_uc010weh.1_5'Flank|STARD3_uc002hse.2_5'Flank|STARD3_uc010wei.1_5'Flank	NM_032192	NP_115568	Q9UD71	PPR1B_HUMAN	protein phosphatase 1, regulatory (inhibitor)	169					signal transduction	cytosol	protein kinase inhibitor activity|protein phosphatase inhibitor activity				0	Lung NSC(9;1.15e-09)|all_lung(9;6.24e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|BRCA - Breast invasive adenocarcinoma(8;1.04e-44)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			CACCCCCTCTGGATGAGTCCG	0.592													27	62					0	0	0.006320	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240908	39240908	+	Silent	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:39240908T>C	uc010wfn.1	+	1	450	c.450T>C	c.(448-450)TGT>TGC	p.C150C		NM_033061	NP_149050			keratin associated protein 4-7												0						CCTTGTGCTGTGCCTCCTCTT	0.567													3	10					0	0	0.004672	0	0
KRT38	8687	broad.mit.edu	37	17	39594521	39594521	+	Silent	SNP	G	A	A	rs146972741		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:39594521G>A	uc002hwq.1	-	6	1488	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	355	Coil 2.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				GCTCCGTGCCGAAGCGGTCCT	0.567													19	23					0	0	0.008871	0	0
IFI35	3430	broad.mit.edu	37	17	41166293	41166293	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:41166293G>A	uc010whj.1	+	7	1040	c.844G>A	c.(844-846)GTC>ATC	p.V282I		NM_005533	NP_005524	P80217	IN35_HUMAN	interferon-induced protein 35	280				EVEALTVVPQGQQGLAVFTSESG -> GRGPDSRTPRTAGP SSLHL (in Ref. 1; no nucleotide entry).	response to virus|type I interferon-mediated signaling pathway	nucleus	protein binding			ovary(1)	1		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.157)		GGGCCTAGCAGTCTTCACCTC	0.647													6	14					0	0	0.001984	0	0
GPATCH8	23131	broad.mit.edu	37	17	42476850	42476850	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:42476850G>A	uc002igw.1	-	8	2659	c.2595C>T	c.(2593-2595)TCC>TCT	p.S865S	GPATCH8_uc002igv.1_Silent_p.S787S|GPATCH8_uc010wiz.1_Silent_p.S787S	NM_001002909	NP_001002909	Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	865	Ser-rich.					intracellular	nucleic acid binding|zinc ion binding			ovary(2)|kidney(1)|skin(1)	4		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		AACGCCGGGAGGAACGATGCG	0.542													12	70					0	0	0.000978	0	0
TTLL6	284076	broad.mit.edu	37	17	46863592	46863592	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:46863592C>T	uc010wlo.1	-	13	1730	c.1695G>A	c.(1693-1695)AAG>AAA	p.K565K	TTLL6_uc002iob.2_Silent_p.K258K|TTLL6_uc010dbi.2_RNA|TTLL6_uc002ioc.2_Silent_p.K318K|TTLL6_uc002iod.2_Silent_p.K412K	NM_001130918	NP_001124390	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	517						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity				0						CCCTCATGCCCTTCTTTCTCA	0.527													54	267					0	0	0.003610	0	0
SNF8	11267	broad.mit.edu	37	17	47014475	47014475	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:47014475A>G	uc002ioj.2	-	4	314	c.256T>C	c.(256-258)TTT>CTT	p.F86L	SNF8_uc002iok.2_Missense_Mutation_p.F86L	NM_007241	NP_009172	Q96H20	SNF8_HUMAN	EAP30 subunit of ELL complex	86					cellular membrane organization|endosome transport|protein transport|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytosol|late endosome membrane|transcription factor complex	transcription factor binding				0						TCAGACCAAAATCCTTTTCCA	0.423													14	69					0	0	0.004007	0	0
ABI3	51225	broad.mit.edu	37	17	47295174	47295175	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:47295174_47295175CC>TT	uc002iop.1	+	3	857_858	c.359_360CC>TT	c.(358-360)CCC>CTT	p.P120L	ABI3_uc002ioq.1_Missense_Mutation_p.P114L	NM_016428	NP_057512	Q9P2A4	ABI3_HUMAN	NESH protein isoform 1	120					cellular component movement|regulation of cell migration	cytoplasm|lamellipodium	protein binding				0			Epithelial(5;6.37e-06)|all cancers(6;6.36e-05)			CGGCTGCCCCCCGGCCAGAAGG	0.599										HNSCC(55;0.14)			9	30					0	0	0.004672	0	0
FAM117A	81558	broad.mit.edu	37	17	47793567	47793567	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:47793567G>A	uc002ipk.2	-	7	1090	c.1021C>T	c.(1021-1023)CCA>TCA	p.P341S	FAM117A_uc010wlz.1_Missense_Mutation_p.P69S	NM_030802	NP_110429	Q9C073	F117A_HUMAN	family with sequence similarity 117, member A	341										ovary(1)	1						CAGCCTTCTGGGGGCTCCCGT	0.557													14	39					0	0	0.006122	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48602289	48602289	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:48602289G>A	uc010wmr.1	+	13	1978	c.1816G>A	c.(1816-1818)GAG>AAG	p.E606K	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	569					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			AGTGCTGCAGGAGCTGCTGAT	0.587													10	60					0	0	0.008291	0	0
CACNA1G	8913	broad.mit.edu	37	17	48646648	48646648	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:48646648C>T	uc002irk.1	+	3	849	c.477C>T	c.(475-477)ATC>ATT	p.I159I	CACNA1G_uc002iri.1_Silent_p.I159I|CACNA1G_uc002irj.1_Silent_p.I159I|CACNA1G_uc002irl.1_Silent_p.I159I|CACNA1G_uc002irm.1_Silent_p.I159I|CACNA1G_uc002irn.1_Silent_p.I159I|CACNA1G_uc002iro.1_Silent_p.I159I|CACNA1G_uc002irp.1_Silent_p.I159I|CACNA1G_uc002irq.1_Silent_p.I159I|CACNA1G_uc002irr.1_Silent_p.I159I|CACNA1G_uc002irs.1_Silent_p.I159I|CACNA1G_uc002irt.1_Silent_p.I159I|CACNA1G_uc002irv.1_Silent_p.I159I|CACNA1G_uc002irw.1_Silent_p.I159I|CACNA1G_uc002iru.1_Silent_p.I159I|CACNA1G_uc002irx.1_Silent_p.I72I|CACNA1G_uc002iry.1_Silent_p.I72I|CACNA1G_uc002irz.1_Silent_p.I72I|CACNA1G_uc002isa.1_Silent_p.I72I|CACNA1G_uc002isb.1_Silent_p.I72I|CACNA1G_uc002isc.1_Silent_p.I72I|CACNA1G_uc002isd.1_Silent_p.I72I|CACNA1G_uc002ise.1_Silent_p.I72I|CACNA1G_uc002isf.1_Silent_p.I72I|CACNA1G_uc002isg.1_Silent_p.I72I|CACNA1G_uc002ish.1_Silent_p.I72I|CACNA1G_uc002isi.1_Silent_p.I72I	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	159	I.|Helical; Name=S3 of repeat I; (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ACTTTTTCATCGTCATCGCAG	0.582													7	49					0	0	0.003080	0	0
MARCH10	162333	broad.mit.edu	37	17	60821840	60821840	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:60821840C>T	uc010ddr.2	-	5	670	c.432G>A	c.(430-432)AGG>AGA	p.R144R	MARCH10_uc002jag.3_Silent_p.R144R|MARCH10_uc010dds.2_Silent_p.R182R|MARCH10_uc002jah.2_Silent_p.R143R	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	144							ligase activity|zinc ion binding				0						CTGTAAATCTCCTCAGGTTTG	0.468													9	53					0	0	0.008291	0	0
KCNH6	81033	broad.mit.edu	37	17	61601675	61601675	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:61601675G>A	uc002jay.2	+	2	332	c.252G>A	c.(250-252)CAG>CAA	p.Q84Q	KCNH6_uc002jax.1_Silent_p.Q84Q|KCNH6_uc010wpl.1_Intron|KCNH6_uc010wpm.1_Silent_p.Q84Q|KCNH6_uc002jaz.1_Silent_p.Q84Q	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	84	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GCCTAGCGCAGGCCCTGCTGG	0.637													20	42					0	0	0.002780	0	0
ABCA9	10350	broad.mit.edu	37	17	66985995	66985995	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:66985995T>C	uc002jhu.2	-	30	4057	c.3914A>G	c.(3913-3915)AAA>AGA	p.K1305R	ABCA9_uc010dez.2_Missense_Mutation_p.K1267R	NM_080283	NP_525022	Q8IUA7	ABCA9_HUMAN	ATP-binding cassette, sub-family A, member 9	1305	ABC transporter 2.				transport	integral to membrane	ATP binding|ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	Breast(10;1.47e-12)					GGCAATTTTTTTCTTCCTTTT	0.353													11	12					0	0	0.001368	0	0
RECQL5	9400	broad.mit.edu	37	17	73658685	73658685	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:73658685G>A	uc010dgl.2	-	4	801	c.645C>T	c.(643-645)ATC>ATT	p.I215I	RECQL5_uc010dgk.2_Silent_p.I188I|RECQL5_uc002jpb.1_Silent_p.I215I|RECQL5_uc002joz.3_Silent_p.I215I|RECQL5_uc002jpa.3_Silent_p.I215I	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	215					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			GAGTCTTGAAGATGGCAACTG	0.547								Other_identified_genes_with_known_or_suspected_DNA_repair_function					85	164					0	0	0.003610	0	0
NPLOC4	55666	broad.mit.edu	37	17	79573742	79573743	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:79573742_79573743GG>AA	uc002kat.3	-	7	810_811	c.628_629CC>TT	c.(628-630)CCG>TTG	p.P210L	NPLOC4_uc002kau.3_Missense_Mutation_p.P210L|NPLOC4_uc010wur.1_Missense_Mutation_p.P49L	NM_017921	NP_060391	Q8TAT6	NPL4_HUMAN	nuclear protein localization 4	210					cellular membrane fusion|ER-associated protein catabolic process|Golgi organization	cytosol|endoplasmic reticulum|nuclear outer membrane-endoplasmic reticulum membrane network|nucleus	zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0739)			GATGGCGCTCGGCTGGCACTTA	0.53													14	24					0	0	0.004672	0	0
HEXDC	284004	broad.mit.edu	37	17	80382341	80382341	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr17:80382341G>A	uc002kew.2	+	2	207	c.156G>A	c.(154-156)GAG>GAA	p.E52E	HEXDC_uc002kev.3_Silent_p.E52E|HEXDC_uc010diq.2_Silent_p.E52E			Q8WVB3	HEXDC_HUMAN	SubName: Full=Hexosaminidase (Glycosyl hydrolase family 20, catalytic domain) containing, isoform CRA_c; SubName: Full=Hexosaminidase D;	52					carbohydrate metabolic process	cytoplasm|nucleus	beta-N-acetylhexosaminidase activity|cation binding			ovary(1)|skin(1)	2	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.0143)|BRCA - Breast invasive adenocarcinoma(99;0.0369)			TTCCCTACGAGGGCCCTCTGA	0.597													19	35					0	0	0.001882	0	0
LAMA1	284217	broad.mit.edu	37	18	6978348	6978348	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:6978348C>T	uc002knm.2	-	43	6131	c.6037G>A	c.(6037-6039)GAG>AAG	p.E2013K	LAMA1_uc010wzj.1_Missense_Mutation_p.E1489K	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2013	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTGGCCAGCTCTTTGGTTTTG	0.507													27	47					0	0	0.007291	0	0
DSC3	1825	broad.mit.edu	37	18	28581592	28581592	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:28581592C>T	uc002kwj.3	-	14	2382	c.2227G>A	c.(2227-2229)GAT>AAT	p.D743N	DSC3_uc002kwi.3_Missense_Mutation_p.D743N	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	743	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			ACCACTCTATCGTCTCCAGGT	0.294													9	21					0	0	0.004482	0	0
DSG1	1828	broad.mit.edu	37	18	28919979	28919979	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:28919979G>A	uc002kwp.2	+	11	1890	c.1678G>A	c.(1678-1680)GTC>ATC	p.V560I		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	560	Helical; (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			GGGATTCTTGGTCTTAGGATG	0.393													6	19					0	0	0.001984	0	0
RIT2	6014	broad.mit.edu	37	18	40695455	40695455	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:40695455G>A	uc002lav.2	-	1	203	c.30C>T	c.(28-30)TCC>TCT	p.S10S	RIT2_uc010dnf.2_Silent_p.S10S	NM_002930	NP_002921	Q99578	RIT2_HUMAN	Ras-like without CAAX 2	10					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction|synaptic transmission	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			ovary(1)	1						CGCTGCCCGGGGAGCAGCTGG	0.532													7	31					0	0	0.008291	0	0
ST8SIA5	29906	broad.mit.edu	37	18	44266166	44266166	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:44266166C>T	uc002lcj.1	-	5	1108	c.540G>A	c.(538-540)AGG>AGA	p.R180R	ST8SIA5_uc002lci.1_Silent_p.R27R|ST8SIA5_uc010xcy.1_Silent_p.R216R|ST8SIA5_uc010xcz.1_Silent_p.R149R	NM_013305	NP_037437	O15466	SIA8E_HUMAN	ST8 alpha-N-acetyl-neuraminide	180	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane				upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	3						TGTTGATCTCCCTCCCGCAGC	0.592													7	33					0	0	0.000978	0	0
TCEB3B	51224	broad.mit.edu	37	18	44559736	44559736	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:44559736G>A	uc002lcr.1	-	1	2253	c.1900C>T	c.(1900-1902)CCC>TCC	p.P634S	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	634	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CTGCCGTTGGGGTTGTTTCCA	0.527													33	92					0	0	0.003271	0	0
CCDC11	220136	broad.mit.edu	37	18	47778002	47778002	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:47778002C>T	uc002lee.2	-	4	717	c.626G>A	c.(625-627)CGA>CAA	p.R209Q		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	209	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		CTTGGCTAATCGGTCTTCCTC	0.527													55	75					0	0	0.003610	0	0
TSHZ1	10194	broad.mit.edu	37	18	72999751	72999751	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr18:72999751G>A	uc002lly.2	+	2	2817	c.2254G>A	c.(2254-2256)GCC>ACC	p.A752T		NM_005786	NP_005777	Q6ZSZ6	TSH1_HUMAN	teashirt family zinc finger 1	797						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Esophageal squamous(42;0.129)|Prostate(75;0.142)|Melanoma(33;0.211)		Colorectal(1;0.000501)|READ - Rectum adenocarcinoma(2;0.00226)|BRCA - Breast invasive adenocarcinoma(31;0.246)		GCAGGCCGATGCCATCGACCG	0.582													11	31					0	0	0.001855	0	0
C19orf22	91300	broad.mit.edu	37	19	899628	899628	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:899628G>A	uc002lqg.2	-	6	688	c.620C>T	c.(619-621)GCC>GTC	p.A207V	C19orf22_uc002lqh.2_Missense_Mutation_p.A186V|C19orf22_uc002lqi.2_Silent_p.G206G|C19orf22_uc002lqj.2_Missense_Mutation_p.A85V	NM_138774	NP_620129	Q96D70	CS022_HUMAN	hypothetical protein LOC91300	207	R3H.					nucleus	nucleic acid binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000226)|all_lung(49;0.000353)|Breast(49;0.00066)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGTGTACACGGCCTGGGGGGA	0.692													7	8					0	0	0.004482	0	0
NDUFS7	374291	broad.mit.edu	37	19	1391044	1391045	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:1391044_1391045CG>TT	uc002lse.3	+	5	446_447	c.403_404CG>TT	c.(403-405)CGC>TTC	p.R135F	NDUFS7_uc002lsf.2_Missense_Mutation_p.R199F|NDUFS7_uc002lsh.2_Missense_Mutation_p.R199F|NDUFS7_uc002lsg.2_Missense_Mutation_p.R142F	NM_024407	NP_077718	O75251	NDUS7_HUMAN	NADH-ubiquinone oxidoreductase Fe-S protein 7	135					mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|metal ion binding|NADH dehydrogenase (ubiquinone) activity|protein binding|quinone binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)|Breast(49;0.00186)|Lung NSC(49;0.00292)|all_lung(49;0.00419)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)	NADH(DB00157)	CCCAGCGCTTCGCAAGGTAGGC	0.688													5	18					0	0	0.004672	0	0
ATP8B3	148229	broad.mit.edu	37	19	1789468	1789468	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:1789468G>A	uc002ltw.2	-	23	2971	c.2737C>T	c.(2737-2739)CGC>TGC	p.R913C	ATP8B3_uc002ltv.2_Missense_Mutation_p.R876C|ATP8B3_uc002ltx.2_RNA	NM_138813	NP_620168	O60423	AT8B3_HUMAN	ATPase, class I, type 8B, member 3	913	Cytoplasmic (Potential).				ATP biosynthetic process		ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCGTCACGCGGCAGCAGATG	0.662													5	12					0	0	0.001168	0	0
ZNF555	148254	broad.mit.edu	37	19	2851627	2851627	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:2851627A>G	uc002lwo.2	+	3	381	c.292A>G	c.(292-294)ACA>GCA	p.T98A	ZNF555_uc002lwn.3_Missense_Mutation_p.T98A	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	98					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGATCAAACCACAAACCAGGG	0.393													3	18					0	0	0.004672	0	0
GNA11	2767	broad.mit.edu	37	19	3114975	3114976	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:3114975_3114976GG>AA	uc002lxd.2	+	4	752_753	c.510_511GG>AA	c.(508-513)TTGGGC>TTAAGC	p.G171S		NM_002067	NP_002058	P29992	GNA11_HUMAN	guanine nucleotide binding protein (G protein),	171					activation of phospholipase C activity by dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|platelet activation|protein ADP-ribosylation|regulation of action potential	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activity|signal transducer activity			eye(70)|skin(16)	86		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.79e-05)|OV - Ovarian serous cystadenocarcinoma(105;2.68e-113)|Epithelial(107;1.22e-111)|all cancers(105;5.78e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00141)|STAD - Stomach adenocarcinoma(1328;0.181)		TCGCCACCTTGGGCTACCTGCC	0.668			Mis		uveal melanoma								32	48					0	0	0.004672	0	0
FZR1	51343	broad.mit.edu	37	19	3527703	3527704	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:3527703_3527704CC>TT	uc010dtk.2	+	6	579_580	c.545_546CC>TT	c.(544-546)CCC>CTT	p.P182L	FZR1_uc002lxt.2_Missense_Mutation_p.P182L|FZR1_uc002lxv.2_Intron	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	182	WD 1.				activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGGACGCGCCCGAGCTGCAGG	0.634													9	21					0	0	0.004672	0	0
SAFB	6294	broad.mit.edu	37	19	5667119	5667120	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:5667119_5667120GG>AA	uc002mcf.2	+	18	2450_2451	c.2397_2398GG>AA	c.(2395-2400)GGGGGC>GGAAGC	p.G800S	SAFB_uc002mcg.2_Missense_Mutation_p.G800S|SAFB_uc002mce.3_Missense_Mutation_p.G799S|SAFB_uc010xir.1_Missense_Mutation_p.G799S|SAFB_uc010xis.1_Missense_Mutation_p.G731S|SAFB_uc010xit.1_Missense_Mutation_p.G642S|SAFB_uc010xiu.1_Missense_Mutation_p.G599S	NM_002967	NP_002958	Q15424	SAFB1_HUMAN	scaffold attachment factor B	800	Interaction with SAFB2.|Arg-rich.|Gly-rich.				chromatin organization|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	double-stranded DNA binding|nucleotide binding|protein binding|RNA binding			ovary(1)|liver(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;0.000222)		ATGGCTGGGGGGGCTATGGCTC	0.649													9	27					0	0	0.004672	0	0
ACSBG2	81616	broad.mit.edu	37	19	6147545	6147545	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:6147545C>T	uc002mef.1	+	3	383	c.156C>T	c.(154-156)ACC>ACT	p.T52T	ACSBG2_uc002mee.1_5'UTR|ACSBG2_uc002meg.1_Silent_p.T52T|ACSBG2_uc002meh.1_Silent_p.T52T|ACSBG2_uc002mei.1_Silent_p.T2T|ACSBG2_uc010xiz.1_Silent_p.T52T	NM_030924	NP_112186	Q5FVE4	ACBG2_HUMAN	bubblegum-related acyl-CoA synthetase 2	52					cell differentiation|fatty acid metabolic process|multicellular organismal development|spermatogenesis	membrane|microsome|mitochondrion	acyl-CoA thioesterase activity|ATP binding|long-chain fatty acid-CoA ligase activity			ovary(1)	1						CCCCGATGACCATCCCTGAAT	0.488													23	106					0	0	0.003330	0	0
VAV1	7409	broad.mit.edu	37	19	6821821	6821821	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:6821821G>A	uc002mfu.1	+	4	497	c.400G>A	c.(400-402)GAG>AAG	p.E134K	VAV1_uc010xjh.1_Missense_Mutation_p.E134K|VAV1_uc010dva.1_Missense_Mutation_p.E134K|VAV1_uc002mfv.1_Missense_Mutation_p.E79K	NM_005428	NP_005419	P15498	VAV_HUMAN	vav 1 guanine nucleotide exchange factor	134					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|T cell costimulation	cytosol|plasma membrane	metal ion binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(4)|ovary(4)|breast(3)|central_nervous_system(2)|kidney(2)|skin(1)	16						CACCGAGGAGGAGAGTGTAGG	0.657													10	48					0	0	0.001368	0	0
FBN3	84467	broad.mit.edu	37	19	8146297	8146297	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:8146297G>A	uc002mjf.2	-	57	7302	c.7281C>T	c.(7279-7281)TTC>TTT	p.F2427F	FBN3_uc002mje.2_Silent_p.F266F	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2427	EGF-like 39; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						AGCTGCACAGGAAACTGCCCT	0.592													18	32					0	0	0.007413	0	0
FBN3	84467	broad.mit.edu	37	19	8194143	8194143	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:8194143G>A	uc002mjf.2	-	16	2172	c.2151C>T	c.(2149-2151)GCC>GCT	p.A717A		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	717	EGF-like 8; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CCTTGCCTGAGGCACCTGCCT	0.637													7	42					0	0	0.003080	0	0
MARCH2	51257	broad.mit.edu	37	19	8491579	8491579	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:8491579C>T	uc002mjv.2	+	4	704	c.263C>T	c.(262-264)GCC>GTC	p.A88V	MARCH2_uc002mjw.2_Missense_Mutation_p.A88V|MARCH2_uc002mjx.2_Missense_Mutation_p.A88V	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	88	RING-CH-type.				endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						ACGCTGGGTGCCGTGCATAAG	0.597													4	24					0	0	0.000248	0	0
MUC16	94025	broad.mit.edu	37	19	9066695	9066695	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:9066695C>T	uc002mkp.2	-	3	20955	c.20751G>A	c.(20749-20751)ATG>ATA	p.M6917I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6919	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTGGTATCCATTGGAGCTG	0.463													21	130					0	0	0.003330	0	0
MUC16	94025	broad.mit.edu	37	19	9074139	9074139	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:9074139G>A	uc002mkp.2	-	3	13511	c.13307C>T	c.(13306-13308)CCC>CTC	p.P4436L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4438	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACATCCTTGGGACCTTTGCT	0.498													16	41					0	0	0.003163	0	0
DNM2	1785	broad.mit.edu	37	19	10893721	10893721	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:10893721C>T	uc002mps.1	+	6	938	c.774C>T	c.(772-774)TTC>TTT	p.F258F	DNM2_uc010dxk.2_RNA|DNM2_uc002mpt.1_Silent_p.F258F|DNM2_uc002mpv.1_Silent_p.F258F|DNM2_uc002mpu.1_Silent_p.F258F|DNM2_uc010dxl.1_Silent_p.F258F|DNM2_uc002mpw.2_5'UTR	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	258					G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			AGAGGAAGTTCTTCCTCTCCC	0.592													9	38					0	0	0.006214	0	0
IL27RA	9466	broad.mit.edu	37	19	14142700	14142700	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:14142700G>A	uc002mxx.2	+	1	439	c.16G>A	c.(16-18)GGC>AGC	p.G6S		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	6					cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						GGGAGGCAGGGGCGCCCCTTT	0.721													5	9					0	0	0.000602	0	0
LPHN1	22859	broad.mit.edu	37	19	14266174	14266174	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:14266174C>T	uc010xnn.1	-	19	3602	c.3306G>A	c.(3304-3306)AAG>AAA	p.K1102K	LPHN1_uc010xno.1_Silent_p.K1097K|uc002myf.2_RNA	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1102	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						ACCTCACCTTCTTCTGTAAGG	0.592													33	66					0	0	0.006230	0	0
CPAMD8	27151	broad.mit.edu	37	19	17108003	17108003	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:17108003G>A	uc002nfb.2	-	11	1186	c.1154C>T	c.(1153-1155)CCC>CTC	p.P385L		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	338						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CCTCTGCACGGGGGTGGAGTC	0.647													9	15					0	0	0.006214	0	0
ZNF302	55900	broad.mit.edu	37	19	35175586	35175586	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:35175586T>C	uc002nvr.1	+	6	1039	c.776T>C	c.(775-777)ATC>ACC	p.I259T	ZNF302_uc002nvp.1_Missense_Mutation_p.I215T|ZNF302_uc002nvq.1_Missense_Mutation_p.I215T|ZNF302_uc002nvs.1_Missense_Mutation_p.I215T	NM_018443	NP_060913	Q9NR11	ZN302_HUMAN	zinc finger protein 302	294	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;6.16e-07)|Lung NSC(56;9.71e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			AAACAGTCAATCCTCAGTCGC	0.453													11	39					0	0	0.001368	0	0
CAPNS1	826	broad.mit.edu	37	19	36637136	36637136	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:36637136C>T	uc002odj.2	+	9	800	c.643C>T	c.(643-645)CGA>TGA	p.R215*	CAPNS1_uc002odi.1_Nonsense_Mutation_p.R215*|CAPNS1_uc002odk.2_Nonsense_Mutation_p.R215*|CAPNS1_uc002odl.2_Nonsense_Mutation_p.R215*	NM_001749	NP_001740	P04632	CPNS1_HUMAN	calpain, small subunit 1	215	EF-hand 4.				positive regulation of cell proliferation	cytoplasm|plasma membrane	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity				0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			CATGATCATCCGACGCTACTC	0.527													21	92					0	0	0.001882	0	0
CLC	1178	broad.mit.edu	37	19	40222086	40222086	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:40222086C>T	uc002omh.2	-	4	439	c.363G>A	c.(361-363)GTG>GTA	p.V121V		NM_001828	NP_001819	Q05315	LPPL_HUMAN	Charcot-Leyden crystal protein	121	Galectin.				lipid catabolic process|multicellular organismal development		carboxylesterase activity|lysophospholipase activity|sugar binding				0	all_cancers(60;2.99e-06)|all_lung(34;4.7e-08)|Lung NSC(34;5.46e-08)|Ovarian(47;0.06)	Renal(1328;0.000147)|Hepatocellular(1079;0.0202)|Myeloproliferative disorder(2;0.0255)	Epithelial(26;6.43e-25)|OV - Ovarian serous cystadenocarcinoma(5;1.07e-24)|all cancers(26;8.38e-23)	GBM - Glioblastoma multiforme(1328;4.97e-06)|STAD - Stomach adenocarcinoma(1328;0.00655)		GCACCATCTTCACAGCCTCAG	0.408													8	51					0	0	0.003080	0	0
PSG1	5669	broad.mit.edu	37	19	43348712	43348712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:43348712G>A	uc002oux.1	-	5	1233	c.1084C>T	c.(1084-1086)CAA>TAA	p.Q362*	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG8_uc002ouj.3_Intron|PSG8_uc002ouk.3_Intron|PSG8_uc002oul.3_Intron|PSG8_uc002oum.3_Intron|PSG1_uc002oun.2_RNA|PSG8_uc002oup.3_Intron|PSG10_uc010eip.2_RNA|PSG1_uc002our.1_Intron|PSG1_uc010eio.1_Intron|PSG1_uc002ouy.1_Nonsense_Mutation_p.Q340*	NM_006905	NP_008836	P11464	PSG1_HUMAN	pregnancy specific beta-1-glycoprotein 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					female pregnancy	extracellular region				ovary(2)	2		Prostate(69;0.00682)				TAAAGGTTTTGTCCTGAACGG	0.453													19	42					0	0	0.001523	0	0
PSG6	5675	broad.mit.edu	37	19	43585315	43585315	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:43585315C>T	uc002ovi.2	-	2	241	c.148G>A	c.(148-150)GAT>AAT	p.D50N	PSG6_uc010xwk.1_Intron|PSG2_uc002ovr.2_Missense_Mutation_p.D50N|PSG2_uc002ovq.3_Missense_Mutation_p.D50N|PSG2_uc010eiq.1_Missense_Mutation_p.D50N|PSG2_uc002ovs.3_Missense_Mutation_p.D50N|PSG2_uc002ovt.3_Missense_Mutation_p.D50N			Q00889	PSG6_HUMAN	SubName: Full=Putative uncharacterized protein PSG6;	50	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				AGAAGAACATCCTTCCCCTCG	0.473													13	74					0	0	0.002780	0	0
BCAM	4059	broad.mit.edu	37	19	45316532	45316532	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:45316532G>A	uc002ozu.2	+	5	574	c.530G>A	c.(529-531)GGG>GAG	p.G177E	BCAM_uc002ozt.1_Missense_Mutation_p.G177E	NM_005581	NP_005572	P50895	BCAM_HUMAN	basal cell adhesion molecule isoform 1	177	Extracellular (Potential).|Ig-like V-type 2.				cell-matrix adhesion	integral to plasma membrane	laminin binding|laminin receptor activity			skin(1)	1	Lung NSC(12;0.000789)|all_lung(12;0.00218)	Ovarian(192;0.0728)|all_neural(266;0.112)				AGCCGGAACGGGAACCCGGCC	0.662													46	135					0	0	0.003610	0	0
SLC8A2	6543	broad.mit.edu	37	19	47941107	47941108	+	Missense_Mutation	DNP	TT	CC	CC			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:47941107_47941108TT>CC	uc002pgx.2	-	7	2286_2287	c.2008_2009AA>GG	c.(2008-2010)AAG>GGG	p.K670G	SLC8A2_uc010xyq.1_Missense_Mutation_p.K426G|SLC8A2_uc010xyr.1_Missense_Mutation_p.K133G|SLC8A2_uc010ele.2_Missense_Mutation_p.K670G	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	670	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		GAAAATCACCTTAAAATCATAT	0.569													13	51					0	0	0.004672	0	0
NR1H2	7376	broad.mit.edu	37	19	50882384	50882384	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:50882384C>T	uc010enw.2	+	8	1152	c.876C>T	c.(874-876)TTC>TTT	p.F292F	NR1H2_uc002prv.3_Intron|NR1H2_uc002prz.3_Intron|NR1H2_uc002psa.3_Silent_p.F194F	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	291	Ligand-binding (Potential).				negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		TGCCTGGTTTCCTGCAGCTGG	0.592													14	52					0	0	0.003163	0	0
SYT3	84258	broad.mit.edu	37	19	51135778	51135778	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:51135778C>T	uc002pst.2	-	2	1073	c.439G>A	c.(439-441)GAG>AAG	p.E147K	SYT3_uc002psv.2_Missense_Mutation_p.E147K|SYT3_uc010ycd.1_Missense_Mutation_p.E147K	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	147	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		CTGCCTGGCTCCAGCAGCTCA	0.677													3	11					0	0	0.004672	0	0
KLK6	5653	broad.mit.edu	37	19	51462556	51462556	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:51462556G>A	uc002pui.2	-	7	859	c.599C>T	c.(598-600)CCG>CTG	p.P200L	KLK6_uc010eoj.2_Missense_Mutation_p.R72C|KLK6_uc002puh.2_Missense_Mutation_p.P209L|KLK6_uc002puj.2_Missense_Mutation_p.P93L|KLK6_uc010ycn.1_Missense_Mutation_p.P93L|KLK6_uc002pul.2_Missense_Mutation_p.P200L|KLK6_uc002pum.2_Missense_Mutation_p.P93L	NM_001012964	NP_001012982	Q92876	KLK6_HUMAN	kallikrein-related peptidase 6 isoform A	200	Peptidase S1.				amyloid precursor protein metabolic process|central nervous system development|collagen catabolic process|hormone metabolic process|myelination|positive regulation of G-protein coupled receptor protein signaling pathway|protein autoprocessing|proteolysis|regulation of cell differentiation|tissue regeneration	endoplasmic reticulum|extracellular region|microsome|mitochondrion|nucleolus	protein binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00372)|GBM - Glioblastoma multiforme(134;0.00871)		ACATACCAGCGGACCCCCAGA	0.348													9	22					0	0	0.006214	0	0
SIGLEC12	89858	broad.mit.edu	37	19	51994940	51994940	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:51994940C>T	uc002pwx.1	-	8	1799	c.1743G>A	c.(1741-1743)CAG>CAA	p.Q581Q	SIGLEC12_uc002pww.1_Silent_p.Q463Q|SIGLEC12_uc010eoy.1_Silent_p.Q308Q	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	581	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CGATGGCCTCCTGTTCCTGTG	0.582													19	46					0	0	0.002299	0	0
TTYH1	57348	broad.mit.edu	37	19	54930426	54930426	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:54930426C>T	uc002qfq.2	+	2	343	c.251C>T	c.(250-252)TCG>TTG	p.S84L	TTYH1_uc010yey.1_Missense_Mutation_p.S133L|TTYH1_uc002qfr.2_Missense_Mutation_p.S84L|TTYH1_uc002qft.2_Missense_Mutation_p.S84L|TTYH1_uc002qfu.1_5'UTR	NM_020659	NP_065710	Q9H313	TTYH1_HUMAN	tweety 1 isoform 1	84	Cytoplasmic (Potential).				cell adhesion	chloride channel complex|plasma membrane	chloride channel activity|iron ion transmembrane transporter activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0767)		AAGATCCCCTCGCCCGGGGGA	0.706													6	27					0	0	0.001168	0	0
C19orf51	352909	broad.mit.edu	37	19	55670558	55670558	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:55670558C>T	uc002qji.1	-	12	1532	c.1498G>A	c.(1498-1500)GGG>AGG	p.G500R	TNNI3_uc002qjg.3_5'Flank|TNNI3_uc010yft.1_5'Flank|C19orf51_uc002qjh.1_Missense_Mutation_p.G315R|C19orf51_uc002qjj.1_Missense_Mutation_p.G547R|C19orf51_uc002qjk.1_Missense_Mutation_p.G446R|C19orf51_uc002qjl.1_Missense_Mutation_p.G567R			Q8N9W5	CS051_HUMAN	RecName: Full=UPF0470 protein C19orf51;	500											0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		TGTGGGGTCCCACCCTGCAGA	0.657													7	19					0	0	0.003080	0	0
ZIM3	114026	broad.mit.edu	37	19	57647093	57647093	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:57647093G>A	uc002qnz.1	-	5	998	c.612C>T	c.(610-612)TTC>TTT	p.F204F		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	204	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACTTCTCCCCGAATGCTCTTC	0.443													18	62					0	0	0.006122	0	0
ZNF17	7565	broad.mit.edu	37	19	57931243	57931243	+	Missense_Mutation	SNP	G	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr19:57931243G>C	uc002qoo.1	+	3	614	c.383G>C	c.(382-384)AGT>ACT	p.S128T	ZNF547_uc002qpm.3_Intron|ZNF17_uc002qop.1_Missense_Mutation_p.S130T	NM_006959	NP_008890	P17021	ZNF17_HUMAN	zinc finger protein 17	128					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0234)|GBM - Glioblastoma multiforme(193;0.000426)|Lung(386;0.176)		CTCACCAGAAGTGATGAAGGG	0.498													8	33					0	0	0.003080	0	0
SNTG2	54221	broad.mit.edu	37	2	1133330	1133330	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:1133330C>T	uc002qwq.2	+	5	476	c.348C>T	c.(346-348)TTC>TTT	p.F116F	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Intron	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	116	PDZ.				central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		GGATGTTGTTCGTAGGAGATG	0.378													13	13					0	0	0.003163	0	0
NTSR2	23620	broad.mit.edu	37	2	11802339	11802339	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:11802339G>A	uc002rbq.3	-	2	726	c.652C>T	c.(652-654)CCC>TCC	p.P218S		NM_012344	NP_036476	O95665	NTR2_HUMAN	neurotensin receptor 2	218	Helical; Name=5; (Potential).				sensory perception	integral to plasma membrane					0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.129)|OV - Ovarian serous cystadenocarcinoma(76;0.24)	Levocabastine(DB01106)	AGTGCCAAGGGGAGCACGAAG	0.647													43	87					0	0	0.002852	0	0
OTOF	9381	broad.mit.edu	37	2	26699830	26699830	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:26699830C>T	uc002rhk.2	-	22	2732	c.2605G>A	c.(2605-2607)GAC>AAC	p.D869N	OTOF_uc002rhh.2_Missense_Mutation_p.D122N|OTOF_uc002rhi.2_Missense_Mutation_p.D179N|OTOF_uc002rhj.2_Missense_Mutation_p.D122N	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	869	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AAGAGCAGGTCCTTGGAGGGC	0.612													4	22					0	0	0.000248	0	0
SLC5A6	8884	broad.mit.edu	37	2	27427784	27427784	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:27427784G>A	uc002rjd.2	-	8	1141	c.750C>T	c.(748-750)CCC>CCT	p.P250P	SLC5A6_uc010eyv.1_Silent_p.P250P	NM_021095	NP_066918	Q9Y289	SC5A6_HUMAN	solute carrier family 5 (sodium-dependent	250					biotin metabolic process|pantothenate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent multivitamin transmembrane transporter activity			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Biotin(DB00121)|Lipoic Acid(DB00166)	GCCGCACAAAGGGGTCTGGAT	0.572													6	33					0	0	0.003080	0	0
GCKR	2646	broad.mit.edu	37	2	27729363	27729363	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:27729363C>T	uc002rky.2	+	11	951	c.885C>T	c.(883-885)ATC>ATT	p.I295I	GCKR_uc010ezd.2_Silent_p.I295I|GCKR_uc010ylu.1_Silent_p.I105I	NM_001486	NP_001477	Q14397	GCKR_HUMAN	glucokinase regulatory protein	295					carbohydrate metabolic process|glucose transport|negative regulation of glucokinase activity|positive regulation of gene expression|protein import into nucleus, translocation|regulation of glucose transport|response to fructose stimulus|transmembrane transport|triglyceride homeostasis|urate metabolic process	cytosol|nucleoplasm	fructose-6-phosphate binding|protein binding			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)					TCCTGGAAATCTTGCGGACAT	0.552													20	20					0	0	0.002780	0	0
C2orf42	54980	broad.mit.edu	37	2	70402819	70402819	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:70402819G>A	uc002sgh.2	-	5	1353	c.1025C>T	c.(1024-1026)TCG>TTG	p.S342L		NM_017880	NP_060350	Q9NWW7	CB042_HUMAN	hypothetical protein LOC54980	342											0						CCTTTTTAACGAGGAAGCAAC	0.448													44	208					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	2	89416962	89416962	+	RNA	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:89416962G>A	uc010ytr.1	-	42		c.4640C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TTTGCAAACTGGATGCAGCAT	0.507													11	47					0	0	0.008291	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95481640	95481640	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:95481640C>A	uc010fhq.1	-	2	740	c.348G>T	c.(346-348)TTG>TTT	p.L116F	ANKRD20B_uc010fhp.2_RNA	NM_001012421	NP_001012421			ankyrin repeat domain 20 family, member A2												0						TTTCTTTTTCCAAGTTGTCAT	0.299													10	27					6.40141e-05	0.000109251	0.000978	1	0
AFF3	3899	broad.mit.edu	37	2	100209873	100209873	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:100209873C>T	uc002tag.2	-	14	2486	c.2250G>A	c.(2248-2250)CGG>CGA	p.R750R	AFF3_uc002taf.2_Silent_p.R775R|AFF3_uc010fiq.1_Silent_p.R750R|AFF3_uc010yvr.1_Silent_p.R903R|AFF3_uc002tah.1_Silent_p.R775R	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	750					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GAAGTTCGTTCCGGCCAAAGG	0.582													13	41					0	0	0.001855	0	0
LONRF2	164832	broad.mit.edu	37	2	100919490	100919490	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:100919490C>T	uc002tal.3	-	3	1454	c.814G>A	c.(814-816)GCT>ACT	p.A272T	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	272	TPR 5.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						AGAGCCTGAGCTTTTACTTGA	0.368													6	65					0	0	0.001168	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460052	107460052	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:107460052C>T	uc002tdq.2	-	2	501	c.382G>A	c.(382-384)GAT>AAT	p.D128N	ST6GAL2_uc002tdr.2_Missense_Mutation_p.D128N|ST6GAL2_uc002tds.3_Missense_Mutation_p.D128N	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	128	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						TAGTCGTCATCCTCCGGGTAG	0.552													26	108					0	0	0.004656	0	0
SULT1C3	442038	broad.mit.edu	37	2	108868931	108868931	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:108868931C>T	uc010ywo.1	+	2	283	c.283C>T	c.(283-285)CCC>TCC	p.P95S		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	95						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						ACTGAAATTTCCCCATAAAGA	0.398													4	8					0	0	0.000602	0	0
IL1F6	27179	broad.mit.edu	37	2	113765561	113765561	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:113765561C>T	uc010yxr.1	+	4	417	c.417C>T	c.(415-417)ATC>ATT	p.I139I		NM_014440	NP_055255	Q9UHA7	IL36A_HUMAN	interleukin 1 family, member 6 (epsilon)	139					immune response|inflammatory response	extracellular space	cytokine activity|interleukin-1 receptor binding				0						GTCCTCTCATCCTTACCCAAG	0.507													17	24					0	0	0.008871	0	0
DPP10	57628	broad.mit.edu	37	2	116538498	116538498	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:116538498C>T	uc002tla.1	+	16	1867	c.1410C>T	c.(1408-1410)TTC>TTT	p.F470F	DPP10_uc002tlb.1_Silent_p.F420F|DPP10_uc002tlc.1_Silent_p.F466F|DPP10_uc002tle.2_Silent_p.F474F|DPP10_uc002tlf.1_Silent_p.F463F	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	470	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CATGTAATTTCATGAAAGAAC	0.308													5	19					0	0	0.001168	0	0
UPP2	151531	broad.mit.edu	37	2	158974375	158974375	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:158974375G>A	uc002tzp.2	+	4	573	c.379G>A	c.(379-381)GAA>AAA	p.E127K	UPP2_uc002tzo.2_Missense_Mutation_p.E184K	NM_173355	NP_775491	O95045	UPP2_HUMAN	uridine phosphorylase 2 isoform a	127					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|uridine metabolic process	cytosol|type III intermediate filament	uridine phosphorylase activity				0						TATGCTTCATGAACTCATCAA	0.423													16	21					0	0	0.004990	0	0
PLA2R1	22925	broad.mit.edu	37	2	160889546	160889546	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:160889546C>T	uc002ube.1	-	4	972	c.765G>A	c.(763-765)GAG>GAA	p.E255E	PLA2R1_uc010zcp.1_Silent_p.E255E|PLA2R1_uc002ubf.2_Silent_p.E255E	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	255	Extracellular (Potential).|C-type lectin 1.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						AAGAATGTGCCTCACTCCAAG	0.433													9	42					0	0	0.006214	0	0
SCN3A	6328	broad.mit.edu	37	2	165947448	165947448	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:165947448C>T	uc002ucx.2	-	28	5707	c.5215G>A	c.(5215-5217)GGA>AGA	p.G1739R	SCN3A_uc010zcy.1_Missense_Mutation_p.G222R|SCN3A_uc002ucy.2_Missense_Mutation_p.G1690R|SCN3A_uc002ucz.2_Missense_Mutation_p.G1690R	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1739						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CCACAGTCTCCCTTAACTGAG	0.483													8	33					0	0	0.003080	0	0
SCN3A	6328	broad.mit.edu	37	2	165984140	165984140	+	Splice_Site	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:165984140C>T	uc002ucx.2	-	18	3885	c.3393_splice	c.e18+1	p.E1131_splice	SCN3A_uc002ucy.2_Splice_Site_p.E1082_splice|SCN3A_uc002ucz.2_Splice_Site_p.E1082_splice|SCN3A_uc002uda.1_Splice_Site_p.E951_splice|SCN3A_uc002udb.1_Splice_Site_p.E951_splice	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha							voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	AGCATTCTTACCTCTTTGCTT	0.343													7	15					0	0	0.001984	0	0
SCN1A	6323	broad.mit.edu	37	2	166901553	166901553	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:166901553C>T	uc010zcz.1	-	10	1680	c.1662G>A	c.(1660-1662)CAG>CAA	p.Q554Q	SCN1A_uc002udo.3_Silent_p.Q423Q|SCN1A_uc010fpk.2_Silent_p.Q423Q	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	554						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGTGCCATACCTGGTGTGGGG	0.418													3	11					0	0	0.004672	0	0
XIRP2	129446	broad.mit.edu	37	2	168105435	168105435	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:168105435G>A	uc002udx.2	+	8	7551	c.7533G>A	c.(7531-7533)AGG>AGA	p.R2511R	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.R2336R|XIRP2_uc010fpq.2_Silent_p.R2289R|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2336					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAGCACCCAGGAAAAAACAGA	0.358													8	16					0	0	0.003080	0	0
ABCB11	8647	broad.mit.edu	37	2	169836414	169836414	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:169836414G>A	uc002ueo.1	-	11	1285	c.1159C>T	c.(1159-1161)CGT>TGT	p.R387C		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	387	Cytoplasmic (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GCTGCTGCACGTCCAGTTGCA	0.453													4	10					0	0	0.000602	0	0
LRP2	4036	broad.mit.edu	37	2	170135937	170135937	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:170135937G>A	uc002ues.2	-	12	1723	c.1510C>T	c.(1510-1512)CTT>TTT	p.L504F	LRP2_uc010zdf.1_Missense_Mutation_p.L504F	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	504	LDL-receptor class B 2.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TCAGTTATAAGGGTAACCCGA	0.398													10	24					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179408933	179408933	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:179408933C>T	uc010zfg.1	-	294	88543	c.88319G>A	c.(88318-88320)AGA>AAA	p.R29440K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R23135K|TTN_uc010zfi.1_Missense_Mutation_p.R23068K|TTN_uc010zfj.1_Missense_Mutation_p.R22943K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30367							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATACCTATTCTTTCCACGGG	0.373													7	18					0	0	0.001984	0	0
DNAH7	56171	broad.mit.edu	37	2	196720582	196720582	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:196720582C>T	uc002utj.3	-	45	8649	c.8548G>A	c.(8548-8550)GAC>AAC	p.D2850N		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2850	Stalk (By similarity).|Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCAAGTGTGTCTTGAAGCCTG	0.433													43	81					0	0	0.002222	0	0
STK17B	9262	broad.mit.edu	37	2	197021346	197021346	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:197021346A>G	uc002utk.2	-	3	476	c.152T>C	c.(151-153)ATA>ACA	p.I51T	STK17B_uc010fsh.2_Missense_Mutation_p.I51T	NM_004226	NP_004217	O94768	ST17B_HUMAN	serine/threonine kinase 17B	51	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	nucleus	ATP binding|protein serine/threonine kinase activity			lung(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.141)			AGATTTTGATATACATTGTCT	0.353													6	26					0	0	0.001984	0	0
NBEAL1	65065	broad.mit.edu	37	2	203921152	203921152	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:203921152A>C	uc002uzt.3	+	5	641	c.308A>C	c.(307-309)AAT>ACT	p.N103T	NBEAL1_uc002uzq.3_Missense_Mutation_p.N103T|NBEAL1_uc010zid.1_Missense_Mutation_p.N52T|NBEAL1_uc010zie.1_Intron	NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	103							binding			ovary(1)|skin(1)	2						TCTCACAGAAATCTATCAAAT	0.328													44	181					0	0	0.003610	0	0
CCDC108	255101	broad.mit.edu	37	2	219871203	219871204	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:219871203_219871204GG>AA	uc002vjl.1	-	30	4786_4787	c.4702_4703CC>TT	c.(4702-4704)CCT>TTT	p.P1568F		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1568						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTTCCTCGCAGGTTCACAGGCT	0.475													40	78					0	0	0.004672	0	0
IRS1	3667	broad.mit.edu	37	2	227661607	227661607	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:227661607G>A	uc002voh.3	-	1	1900	c.1848C>T	c.(1846-1848)TCC>TCT	p.S616S		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	616					fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		CCACCCCTGGGGACATGGGCA	0.632											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	19					0	0	0.001984	0	0
COL4A4	1286	broad.mit.edu	37	2	227924291	227924291	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:227924291G>A	uc010zlt.1	-	28	2867	c.2213C>T	c.(2212-2214)TCC>TTC	p.S738F		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	738	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		AACAGGGGAGGACCCCTTTTC	0.512													16	47					0	0	0.008871	0	0
COL4A4	1286	broad.mit.edu	37	2	227958912	227958912	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:227958912C>T	uc010zlt.1	-	20	1952	c.1298G>A	c.(1297-1299)GGA>GAA	p.G433E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	433	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CCCTGGTTTTCCTGGAGCAGA	0.552													10	14					0	0	0.008291	0	0
SPHKAP	80309	broad.mit.edu	37	2	228884185	228884185	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:228884185G>A	uc002vpq.2	-	7	1432	c.1385C>T	c.(1384-1386)GCC>GTC	p.A462V	SPHKAP_uc002vpp.2_Missense_Mutation_p.A462V|SPHKAP_uc010zlx.1_Missense_Mutation_p.A462V	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	462						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGGCTGTGGGGCAGCATCACT	0.522													7	45					0	0	0.001984	0	0
TMC2	117532	broad.mit.edu	37	20	2542553	2542553	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr20:2542553G>A	uc002wgf.1	+	4	466	c.451G>A	c.(451-453)GAG>AAG	p.E151K	TMC2_uc002wgg.1_Missense_Mutation_p.E135K|TMC2_uc010zpw.1_5'UTR|TMC2_uc010zpx.1_5'UTR	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	151	Arg/Asp/Glu/Lys-rich (highly charged).|Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						CCTGTCCGAGGAGGAACTGGC	0.607													28	56					0	0	0.002096	0	0
ADAM33	80332	broad.mit.edu	37	20	3655171	3655171	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr20:3655171G>A	uc002wit.2	-	6	667	c.580C>T	c.(580-582)CCT>TCT	p.P194S	ADAM33_uc002wir.1_Missense_Mutation_p.P194S|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Missense_Mutation_p.P194S|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_Missense_Mutation_p.P206S|ADAM33_uc010zqh.1_Missense_Mutation_p.P194S	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	194	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GGACCACCAGGAAGGCTGGTC	0.572													17	59					0	0	0.008871	0	0
ANKRD5	63926	broad.mit.edu	37	20	10030446	10030446	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr20:10030446C>T	uc002wno.2	+	7	1622	c.1229C>T	c.(1228-1230)TCG>TTG	p.S410L	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.S410L|ANKRD5_uc010gbz.2_Missense_Mutation_p.S221L	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	410							calcium ion binding			ovary(1)|breast(1)	2						GTCTTAGGATCGTATGGACCT	0.408													10	14					0	0	0.001368	0	0
MYLK2	85366	broad.mit.edu	37	20	30408346	30408346	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr20:30408346C>T	uc002wwq.2	+	3	572	c.470C>T	c.(469-471)TCC>TTC	p.S157F		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	157					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GCCATCATCTCCAGGTGAATA	0.582													5	24					0	0	0.001168	0	0
EDEM2	55741	broad.mit.edu	37	20	33711741	33711741	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr20:33711741G>A	uc002xbo.2	-	9	1166	c.1066C>T	c.(1066-1068)CCT>TCT	p.P356S	EDEM2_uc010zuv.1_Missense_Mutation_p.P315S|EDEM2_uc010zus.1_Missense_Mutation_p.P135S|EDEM2_uc002xbq.2_Missense_Mutation_p.P319S|EDEM2_uc010zut.1_Missense_Mutation_p.P315S|EDEM2_uc002xbp.2_Missense_Mutation_p.P204S|EDEM2_uc002xbn.2_Missense_Mutation_p.P204S|EDEM2_uc002xbr.2_RNA|EDEM2_uc010zuu.1_Missense_Mutation_p.P80S	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	356					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			TATCCCTGAGGAATGTTGTAG	0.527													18	34					0	0	0.002780	0	0
LSM14B	149986	broad.mit.edu	37	20	60705702	60705702	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr20:60705702C>T	uc010gjy.1	+	6	996	c.790C>T	c.(790-792)CGA>TGA	p.R264*	LSM14B_uc010gjx.1_Nonsense_Mutation_p.R290*|LSM14B_uc002ybv.2_Nonsense_Mutation_p.R238*|LSM14B_uc010gjz.1_Nonsense_Mutation_p.R220*|LSM14B_uc010zzz.1_Nonsense_Mutation_p.R184*	NM_144703	NP_653304	Q9BX40	LS14B_HUMAN	LSM14 homolog B	264	DFDF.				multicellular organismal development|regulation of translation	ribonucleoprotein complex					0	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.28e-07)			CCAGTTCAACCGAGAGGAGCT	0.403													14	26					0	0	0.003163	0	0
KCNJ15	3772	broad.mit.edu	37	21	39672055	39672055	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr21:39672055G>A	uc002ywv.2	+	4	1174	c.872G>A	c.(871-873)AGC>AAC	p.S291N	KCNJ15_uc002yww.2_Missense_Mutation_p.S291N|KCNJ15_uc002ywx.2_Missense_Mutation_p.S291N	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	291	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						GAATCCACCAGCGCTGTCTGC	0.498													6	28					0	0	0.001168	0	0
DSCAM	1826	broad.mit.edu	37	21	41561001	41561001	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr21:41561001C>T	uc002yyq.1	-	12	2973	c.2521G>A	c.(2521-2523)GAG>AAG	p.E841K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	841	Ig-like C2-type 9.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TCTCCCACCTCCTTGGTGGAC	0.473													39	59					0	0	0.003610	0	0
CRYAA	1409	broad.mit.edu	37	21	44592263	44592263	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr21:44592263C>T	uc002zdd.1	+	3	464	c.395C>T	c.(394-396)TCC>TTC	p.S132F		NM_000394	NP_000385	P02489	CRYAA_HUMAN	crystallin, alpha A	132					anti-apoptosis|negative regulation of intracellular transport|protein homooligomerization|response to heat|visual perception	cytoplasm|nucleus	structural constituent of eye lens|unfolded protein binding			breast(1)|central_nervous_system(1)	2						CTCTCTTGCTCCCTGTCTGCC	0.672													11	27					0	0	0.000978	0	0
ADARB1	104	broad.mit.edu	37	21	46596523	46596523	+	Nonsense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr21:46596523C>T	uc002zgy.2	+	4	1342	c.907C>T	c.(907-909)CAG>TAG	p.Q303*	ADARB1_uc002zgr.2_Nonsense_Mutation_p.Q303*|ADARB1_uc002zgs.2_RNA|ADARB1_uc002zgw.2_Nonsense_Mutation_p.Q303*|ADARB1_uc002zgv.2_RNA|ADARB1_uc002zgt.2_Nonsense_Mutation_p.Q303*|ADARB1_uc010gpx.2_Intron|ADARB1_uc002zgq.2_RNA|ADARB1_uc002zgu.2_RNA|ADARB1_uc011afo.1_Nonsense_Mutation_p.Q352*	NM_015833	NP_056648	P78563	RED1_HUMAN	RNA-specific adenosine deaminase B1 isoform 2	303					adenosine to inosine editing|mRNA modification|mRNA processing|RNA processing	nucleoplasm|nucleus	double-stranded RNA adenosine deaminase activity|double-stranded RNA adenosine deaminase activity|double-stranded RNA binding|double-stranded RNA binding|metal ion binding|mRNA binding|RNA binding			skin(1)	1				Colorectal(79;0.115)		GCACTTGGATCAGACGCCATC	0.547													13	57					0	0	0.001855	0	0
PCNT	5116	broad.mit.edu	37	21	47841920	47841920	+	Missense_Mutation	SNP	G	A	A	rs144775948		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr21:47841920G>A	uc002zji.3	+	32	7168	c.7061G>A	c.(7060-7062)GGG>GAG	p.G2354E	PCNT_uc002zjj.2_Missense_Mutation_p.G2236E	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	2354					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					CTGAGCCCGGGGTCAGGAGGC	0.617													14	59					0	0	0.003163	0	0
XKR3	150165	broad.mit.edu	37	22	17288712	17288712	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:17288712G>A	uc002zlv.2	-	2	350	c.252C>T	c.(250-252)ATC>ATT	p.I84I	XKR3_uc011agf.1_Silent_p.I84I	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	84	Helical; (Potential).					integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				AAAACATCAGGATAATTTGAT	0.333													12	17					0	0	0.001368	0	0
DGCR14	8220	broad.mit.edu	37	22	19130249	19130249	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:19130249G>A	uc002zou.2	-	2	331	c.294C>T	c.(292-294)CCC>CCT	p.P98P	DGCR14_uc002zot.2_Silent_p.P19P|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	98					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					AGGGTGGCGGGGGCTCCCGGG	0.582													61	61					0	0	0.003610	0	0
SLC2A11	66035	broad.mit.edu	37	22	24217412	24217412	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:24217412C>T	uc002zyn.3	+	4	489	c.390C>T	c.(388-390)CTC>CTT	p.L130L	SLC2A11_uc002zyl.1_Silent_p.L137L|SLC2A11_uc002zym.3_Silent_p.L137L|SLC2A11_uc002zyo.3_RNA|SLC2A11_uc011ajc.1_Silent_p.L137L|SLC2A11_uc011ajd.1_Silent_p.L124L|SLC2A11_uc002zyp.3_Silent_p.L133L	NM_001024938	NP_001020109	Q9BYW1	GTR11_HUMAN	glucose transporter protein 10 isoform c	130	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	sugar transmembrane transporter activity			ovary(1)	1						GAAGACTGCTCGTGGGAGTCA	0.413													18	34					0	0	0.003330	0	0
MN1	4330	broad.mit.edu	37	22	28192913	28192913	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:28192913C>T	uc003adj.2	-	1	4574	c.3619G>A	c.(3619-3621)GTC>ATC	p.V1207I		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	1207							binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						GCGCTCTTGACCGCCTCGGAG	0.672			T	ETV6	AML|meningioma								4	28					0	0	0.000248	0	0
SOX10	6663	broad.mit.edu	37	22	38369508	38369509	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:38369508_38369509CC>TT	uc003aun.1	-	4	1672_1673	c.1394_1395GG>AA	c.(1393-1395)CGG>CAA	p.R465Q	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Missense_Mutation_p.R465Q	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	465						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					CCCTTTAGGGCCGGGACAGTGT	0.693													4	0					0	0	0.004672	0	0
CELSR1	9620	broad.mit.edu	37	22	46930320	46930320	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:46930320G>A	uc003bhw.1	-	1	2748	c.2748C>T	c.(2746-2748)GCC>GCT	p.A916A		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	916	Extracellular (Potential).|Cadherin 7.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CCCGGTCCGTGGCAGAGACCT	0.597													4	33					0	0	0.000602	0	0
CRELD2	79174	broad.mit.edu	37	22	50313864	50313864	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:50313864C>T	uc003bja.2	+	4	519	c.384C>T	c.(382-384)TGC>TGT	p.C128C	ALG12_uc003biy.2_5'Flank|CRELD2_uc003biz.3_Silent_p.C128C|CRELD2_uc010haj.2_Silent_p.C128C|CRELD2_uc010hal.2_Silent_p.C128C|CRELD2_uc010hak.2_Silent_p.C128C|CRELD2_uc010ham.2_Silent_p.C128C	NM_024324	NP_077300	Q6UXH1	CREL2_HUMAN	cysteine-rich with EGF-like domains 2 isoform b	128						endoplasmic reticulum|extracellular region	calcium ion binding				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.198)|LUAD - Lung adenocarcinoma(64;0.247)		AAGTGTGCTGCTCTCCAGGAA	0.498													22	26					0	0	0.002780	0	0
SAPS2	9701	broad.mit.edu	37	22	50845137	50845137	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr22:50845137G>A	uc003blb.1	+	5	669	c.247G>A	c.(247-249)GAG>AAG	p.E83K	SAPS2_uc003bky.1_Missense_Mutation_p.E83K|SAPS2_uc003bkz.1_Missense_Mutation_p.E83K|SAPS2_uc003blc.2_Missense_Mutation_p.E83K|SAPS2_uc003bla.1_Missense_Mutation_p.E83K	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	83						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		CACAGCCTGTGAGCTTCTGAC	0.527													21	141					0	0	0.002299	0	0
C3orf32	51066	broad.mit.edu	37	3	8672581	8672582	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:8672581_8672582GG>AA	uc003bqu.2	-	6	614_615	c.368_369CC>TT	c.(367-369)TCC>TTT	p.S123F	C3orf32_uc003bqz.2_Missense_Mutation_p.S123F|C3orf32_uc003bqt.2_Missense_Mutation_p.S72F|C3orf32_uc011atg.1_Missense_Mutation_p.S145F|C3orf32_uc003bqv.2_Missense_Mutation_p.S72F|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_RNA|C3orf32_uc003bqy.2_Missense_Mutation_p.S123F	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	123										skin(1)	1						AGAGCCTGGGGGAGGCGCCTCT	0.5													16	31					0	0	0.004672	0	0
C3orf31	132001	broad.mit.edu	37	3	11887979	11887979	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:11887979C>T	uc003bwh.2	-	1	374	c.132G>A	c.(130-132)CAG>CAA	p.Q44Q	C3orf31_uc003bwj.2_Silent_p.Q44Q|C3orf31_uc003bwi.2_RNA|C3orf31_uc011auo.1_Silent_p.Q44Q|C3orf31_uc011aup.1_RNA|C3orf31_uc010hdy.1_RNA	NM_138807	NP_620162	Q96BW9	MMP37_HUMAN	MMP37-like protein, mitochondrial precursor	44					protein import into mitochondrial matrix	extrinsic to mitochondrial inner membrane					0						GGCTCACCTTCTGGTCTGAAC	0.622													9	33					0	0	0.004482	0	0
SCN10A	6336	broad.mit.edu	37	3	38793930	38793930	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:38793930C>T	uc003ciq.2	-	11	1535	c.1535G>A	c.(1534-1536)CGA>CAA	p.R512Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	512					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	TGAGATATCTCGGCCAGGGGA	0.587													17	14					0	0	0.004007	0	0
CDCP1	64866	broad.mit.edu	37	3	45130573	45130573	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:45130573C>T	uc003com.2	-	8	2189	c.2054G>A	c.(2053-2055)GGG>GAG	p.G685E		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	685	Helical; (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		AATGATGAGCCCGAGGGCAGA	0.483													5	24					0	0	0.000602	0	0
TDGF1	6997	broad.mit.edu	37	3	46620588	46620588	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:46620588G>A	uc003cpv.2	+	2	319	c.39G>A	c.(37-39)GTG>GTA	p.V13V	LRRC2_uc003cpu.3_Intron	NM_003212	NP_003203	P13385	TDGF1_HUMAN	teratocarcinoma-derived growth factor 1	13					activation of MAPK activity|anterior/posterior axis specification, embryo|mammary gland development|morphogenesis of a branching structure|negative regulation of apoptosis|peptidyl-serine phosphorylation|positive regulation of cell migration|positive regulation of peptidyl-tyrosine phosphorylation	anchored to membrane|cell surface|extrinsic to plasma membrane	growth factor activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00114)|KIRC - Kidney renal clear cell carcinoma(197;0.0173)|Kidney(197;0.0204)		TTCCTAGTGTGATTTGGATCA	0.408													35	53					0	0	0.002222	0	0
ARIH2	10425	broad.mit.edu	37	3	49002366	49002366	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:49002366C>T	uc003cvb.2	+	5	650	c.338C>T	c.(337-339)TCT>TTT	p.S113F	ARIH2_uc003cvc.2_Missense_Mutation_p.S113F|ARIH2_uc003cvf.2_Missense_Mutation_p.S31F|ARIH2_uc010hkl.2_Missense_Mutation_p.S113F	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	113					developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		AAGTCCAATTCTGCTCAACTG	0.388													6	36					0	0	0.001168	0	0
VPRBP	9730	broad.mit.edu	37	3	51467537	51467537	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:51467537G>A	uc003dbe.1	-	10	1583	c.1415C>T	c.(1414-1416)GCC>GTC	p.A472V		NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	472					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		CTCCAAGACGGCCCGAAATGA	0.473													6	22					0	0	0.001168	0	0
PARP3	10039	broad.mit.edu	37	3	51981903	51981903	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:51981903C>T	uc003dby.2	+	10	1795	c.1424C>T	c.(1423-1425)ACC>ATC	p.T475I	PARP3_uc003dbz.2_Missense_Mutation_p.T482I	NM_005485	NP_005476	Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	475	PARP catalytic.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		CGAGGCCACACCGAGCCTGGT	0.612													15	72					0	0	0.004990	0	0
PHF7	51533	broad.mit.edu	37	3	52456779	52456779	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:52456779G>A	uc003ddy.2	+	10	1607	c.801G>A	c.(799-801)AGG>AGA	p.R267R	PHF7_uc003ddz.2_Silent_p.R228R	NM_016483	NP_057567	Q9BWX1	PHF7_HUMAN	PHD finger protein 7 isoform 1	267						nucleus	zinc ion binding			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;1.71e-05)|Kidney(197;0.00178)|KIRC - Kidney renal clear cell carcinoma(197;0.00201)|OV - Ovarian serous cystadenocarcinoma(275;0.0275)		CCTCTAGGAGGTGGTGCCTCA	0.502													12	86					0	0	0.001855	0	0
NISCH	11188	broad.mit.edu	37	3	52521747	52521747	+	Missense_Mutation	SNP	C	T	T	rs62256878		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:52521747C>T	uc011beg.1	+	17	2311	c.2239C>T	c.(2239-2241)CGG>TGG	p.R747W	NISCH_uc003ded.3_Missense_Mutation_p.R747W|NISCH_uc003dee.3_Missense_Mutation_p.R236W|NISCH_uc003deg.1_RNA	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	747	Interaction with LIMK (By similarity).|Interaction with ITGA5 (By similarity).|Interaction with PAK1 (By similarity).				apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		CCAGGAGTCTCGGGGCAGCAG	0.612													12	35					0	0	0.001855	0	0
NT5DC2	64943	broad.mit.edu	37	3	52561704	52561704	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:52561704G>A	uc003deo.2	-	9	1279	c.855C>T	c.(853-855)CCC>CCT	p.P285P	NT5DC2_uc003dem.2_Silent_p.P155P|NT5DC2_uc003den.2_Silent_p.P322P|NT5DC2_uc010hmi.2_Silent_p.P297P|NT5DC2_uc010hmj.2_Silent_p.P101P	NM_022908	NP_075059	Q9H857	NT5D2_HUMAN	5'-nucleotidase domain containing 2 isoform 2	285							hydrolase activity|metal ion binding				0				BRCA - Breast invasive adenocarcinoma(193;1.7e-05)|Kidney(197;0.00177)|KIRC - Kidney renal clear cell carcinoma(197;0.002)|OV - Ovarian serous cystadenocarcinoma(275;0.0476)		GGCGCCAATCGGGACCCACCA	0.627													6	24					0	0	0.001984	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55052306	55052306	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:55052306G>A	uc003dhf.2	+	35	2997	c.2949G>A	c.(2947-2949)AAG>AAA	p.K983K	CACNA2D3_uc003dhg.1_Silent_p.K889K|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	983	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GCACCATCAAGGAGACTACAG	0.493													3	11					0	0	0.004672	0	0
SUCLG2	8801	broad.mit.edu	37	3	67559257	67559257	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:67559257G>A	uc003dna.3	-	7	759	c.731C>T	c.(730-732)CCC>CTC	p.P244L	SUCLG2_uc010hob.2_Intron	NM_003848	NP_003839	Q96I99	SUCB2_HUMAN	succinate-CoA ligase, GDP-forming beta subunit	244	ATP-grasp.				succinyl-CoA metabolic process|tricarboxylic acid cycle	mitochondrial matrix	ATP binding|GTP binding|succinate-CoA ligase (GDP-forming) activity			central_nervous_system(1)|skin(1)	2		Renal(2;0.00294)|Lung NSC(201;0.012)|Hepatocellular(537;0.121)		BRCA - Breast invasive adenocarcinoma(55;3.53e-05)|Epithelial(33;0.000153)	Succinic acid(DB00139)	TTCACCAAAGGGATTCACTTC	0.308													6	14					0	0	0.001984	0	0
MYH15	22989	broad.mit.edu	37	3	108219035	108219036	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:108219035_108219036CC>TT	uc003dxa.1	-	5	542_543	c.485_486GG>AA	c.(484-486)GGG>GAA	p.G162E		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	162	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						ATCGCCTCTTCCCTTTGTAGGC	0.47													7	11					0	0	0.004672	0	0
TRAT1	50852	broad.mit.edu	37	3	108572518	108572518	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:108572518G>A	uc003dxi.1	+	6	499	c.355G>A	c.(355-357)GGG>AGG	p.G119R	TRAT1_uc010hpx.1_Missense_Mutation_p.G82R	NM_016388	NP_057472	Q6PIZ9	TRAT1_HUMAN	T-cell receptor interacting molecule	119	Cytoplasmic (Potential).				cellular defense response|negative regulation of receptor recycling|negative regulation of transport|positive regulation of calcium-mediated signaling|positive regulation of T cell receptor signaling pathway|T cell receptor signaling pathway	integral to plasma membrane|T cell receptor complex	phosphatidylinositol-4,5-bisphosphate 3-kinase activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(1)	1						CAGCGTTAAGGGGAAGCGTAG	0.418													9	20					0	0	0.006214	0	0
PHLDB2	90102	broad.mit.edu	37	3	111658337	111658337	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:111658337G>A	uc010hqa.2	+	7	2557	c.2146G>A	c.(2146-2148)GAT>AAT	p.D716N	PHLDB2_uc003dyc.2_Missense_Mutation_p.D700N|PHLDB2_uc003dyd.2_Missense_Mutation_p.D673N|PHLDB2_uc003dyg.2_Missense_Mutation_p.D716N|PHLDB2_uc003dyh.2_Missense_Mutation_p.D673N|PHLDB2_uc003dyi.2_Missense_Mutation_p.D302N	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	716						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						TGACCTGTTGGATGTTGAAAG	0.413													5	21					0	0	0.000602	0	0
FBXO40	51725	broad.mit.edu	37	3	121341537	121341537	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:121341537G>A	uc003eeg.2	+	3	1471	c.1261G>A	c.(1261-1263)GGA>AGA	p.G421R		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	421					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AAGCATTGATGGACTGTTCAT	0.512													12	77					0	0	0.003163	0	0
ASTE1	28990	broad.mit.edu	37	3	130743531	130743531	+	Missense_Mutation	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:130743531A>G	uc003env.1	-	3	1062	c.620T>C	c.(619-621)TTC>TCC	p.F207S	NEK11_uc003enx.2_5'Flank|NEK11_uc003eny.2_5'Flank|NEK11_uc003eoa.2_5'Flank|NEK11_uc003enz.2_5'Flank|NEK11_uc010htn.2_5'Flank|NEK11_uc011blk.1_5'Flank|NEK11_uc011bll.1_5'Flank|NEK11_uc003enw.1_5'Flank|NEK11_uc011blm.1_5'Flank|ASTE1_uc010htm.1_Missense_Mutation_p.F207S|ASTE1_uc011blj.1_RNA	NM_014065	NP_054784	Q2TB18	ASTE1_HUMAN	asteroid homolog 1	207					DNA repair		nuclease activity				0						CATATTGCTGAAGTGATGGCA	0.403													6	31					0	0	0.001984	0	0
EPHB1	2047	broad.mit.edu	37	3	134898712	134898712	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:134898712G>A	uc003eqt.2	+	10	1990	c.1770G>A	c.(1768-1770)GGG>GGA	p.G590G	EPHB1_uc003equ.2_Silent_p.G151G	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	590	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						GCTCCCCAGGGATGAAGATCT	0.488													43	59					0	0	0.003610	0	0
ACPL2	92370	broad.mit.edu	37	3	141011771	141011772	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:141011771_141011772GG>AA	uc003etu.2	+	8	1466_1467	c.1167_1168GG>AA	c.(1165-1170)TTGGGC>TTAAGC	p.G390S	ACPL2_uc003etv.2_Missense_Mutation_p.G390S|ACPL2_uc011bna.1_Missense_Mutation_p.G352S|ACPL2_uc011bnb.1_Missense_Mutation_p.G373S	NM_152282	NP_689495	Q8TE99	ACPL2_HUMAN	acid phosphatase-like 2 precursor	390						extracellular region	acid phosphatase activity			skin(1)	1						TCAGTGCCTTGGGCCTTTCAGA	0.535													23	103					0	0	0.004672	0	0
GPR171	29909	broad.mit.edu	37	3	150916784	150916784	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:150916784A>C	uc003eyq.3	-	3	630	c.390T>G	c.(388-390)TTT>TTG	p.F130L	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_013308	NP_037440	O14626	GP171_HUMAN	G protein-coupled receptor 171	130	Cytoplasmic (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TCATTTTGGCAAATCCGGGTT	0.393													10	17					0	0	0.008291	0	0
SLITRK3	22865	broad.mit.edu	37	3	164905895	164905896	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:164905895_164905896GG>AA	uc003fej.3	-	2	3167_3168	c.2723_2724CC>TT	c.(2722-2724)CCC>CTT	p.P908L	SLITRK3_uc003fek.2_Missense_Mutation_p.P908L	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	908	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						CCTTTAATTTGGGCACTGTTCC	0.55										HNSCC(40;0.11)			28	24					0	0	0.004672	0	0
SERPINI2	5276	broad.mit.edu	37	3	167183320	167183320	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:167183320T>A	uc003fer.1	-	3	678	c.620A>T	c.(619-621)AAT>ATT	p.N207I	SERPINI2_uc003fes.1_Missense_Mutation_p.N217I|SERPINI2_uc003fet.1_Missense_Mutation_p.N207I	NM_006217	NP_006208	O75830	SPI2_HUMAN	serpin peptidase inhibitor, clade I (pancpin),	207					cellular component movement|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(2)|urinary_tract(1)	3						AGTTGAACCATTTTTCTTAGT	0.368													12	16					0	0	0.001855	0	0
ACAP2	23527	broad.mit.edu	37	3	195000119	195000119	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr3:195000119G>A	uc003fun.3	-	23	2516	c.2275C>T	c.(2275-2277)CAA>TAA	p.Q759*		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	759					regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						GATGCCATTTGGGAAAAATCA	0.303													11	51					0	0	0.000978	0	0
JAKMIP1	152789	broad.mit.edu	37	4	6114543	6114543	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:6114543G>A	uc003giu.3	-	2	311	c.35C>T	c.(34-36)CCC>CTC	p.P12L	JAKMIP1_uc010idb.1_Missense_Mutation_p.P12L|JAKMIP1_uc010idc.1_Missense_Mutation_p.P12L|JAKMIP1_uc010idd.1_Missense_Mutation_p.P12L|JAKMIP1_uc011bwc.1_Missense_Mutation_p.P12L|JAKMIP1_uc003giv.3_Missense_Mutation_p.P12L|JAKMIP1_uc010ide.2_Missense_Mutation_p.P12L	NM_144720	NP_653321	Q96N16	JKIP1_HUMAN	janus kinase and microtubule interacting protein	12	Mediates association with microtubules.				protein transport	cytoplasm|membrane|microtubule|peripheral to membrane of membrane fraction|ribonucleoprotein complex	GABA receptor binding|RNA binding			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						CTCCATCTCGGGCTTCTCGCC	0.612													9	25					0	0	0.006214	0	0
C4orf23	152992	broad.mit.edu	37	4	8472856	8472856	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:8472856C>T	uc003glg.1	+	10	1474	c.1286C>T	c.(1285-1287)ACC>ATC	p.T429I	C4orf23_uc003glh.1_Missense_Mutation_p.T266I|C4orf23_uc003gli.1_5'Flank	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	658					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						GACACGGAGACCCTGCGGAGG	0.572													43	64					0	0	0.002522	0	0
SLIT2	9353	broad.mit.edu	37	4	20521064	20521064	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:20521064C>T	uc003gpr.1	+	12	1322	c.1118C>T	c.(1117-1119)TCC>TTC	p.S373F	SLIT2_uc003gps.1_Missense_Mutation_p.S373F	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	373	LRR 10.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GGACTGTTTTCCTTACAGCTC	0.308													6	27					0	0	0.001168	0	0
SLIT2	9353	broad.mit.edu	37	4	20591305	20591305	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:20591305G>A	uc003gpr.1	+	30	3331	c.3127G>A	c.(3127-3129)GAC>AAC	p.D1043N	SLIT2_uc003gps.1_Missense_Mutation_p.D1035N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1043	EGF-like 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CTGTGCCCAGGACCTGAACCC	0.507													7	35					0	0	0.003080	0	0
ART3	419	broad.mit.edu	37	4	77003171	77003171	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:77003171G>A	uc003hjo.2	+	3	383	c.264G>A	c.(262-264)ATG>ATA	p.M88I	ART3_uc003hji.2_Missense_Mutation_p.M88I|ART3_uc003hjj.2_Missense_Mutation_p.M88I|ART3_uc003hjk.2_Missense_Mutation_p.M88I|ART3_uc010ija.1_Missense_Mutation_p.M88I|ART3_uc003hjn.2_Missense_Mutation_p.M88I|ART3_uc003hjp.2_Intron|ART3_uc010ijb.2_Intron|ART3_uc003hjq.2_Intron|ART3_uc003hjr.2_Missense_Mutation_p.M58I|ART3_uc010ijc.2_Missense_Mutation_p.M58I|ART3_uc010ijd.2_Missense_Mutation_p.M58I	NM_001130016	NP_001123488	Q13508	NAR3_HUMAN	ADP-ribosyltransferase 3 isoform a	88					protein ADP-ribosylation	anchored to membrane|integral to plasma membrane	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity			ovary(2)	2			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TTCTCCCTATGAATTTTAAGG	0.428													5	30					0	0	0.000602	0	0
ANKRD56	345079	broad.mit.edu	37	4	77816807	77816807	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:77816807G>A	uc003hki.2	-	1	2196	c.2196C>T	c.(2194-2196)TTC>TTT	p.F732F		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	732											0						GATAGACAGGGAAAATGGGCT	0.502													37	129					0	0	0.005524	0	0
GK2	2712	broad.mit.edu	37	4	80328679	80328679	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:80328679G>A	uc003hlu.2	-	1	694	c.676C>T	c.(676-678)CCA>TCA	p.P226S		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	226					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						AGGTCCATTGGAATTTCAAAA	0.408													8	19					0	0	0.003080	0	0
NFKB1	4790	broad.mit.edu	37	4	103498131	103498131	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:103498131G>A	uc011ceq.1	+	7	970	c.503G>A	c.(502-504)GGA>GAA	p.G168E	NFKB1_uc011cep.1_Missense_Mutation_p.G169E|NFKB1_uc011cer.1_5'Flank	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	168	RHD.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	TATAATCCTGGACTCTTGGTG	0.493													4	29					0	0	0.000248	0	0
DKK2	27123	broad.mit.edu	37	4	107845214	107845214	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:107845214T>C	uc003hyi.2	-	4	1382	c.677A>G	c.(676-678)GAA>GGA	p.E226G	DKK2_uc003hyj.1_3'UTR	NM_014421	NP_055236	Q9UBU2	DKK2_HUMAN	dickkopf homolog 2 precursor	226	DKK-type Cys-2.				multicellular organismal development|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular space				ovary(3)|lung(1)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.34e-06)		CTGGAAAATTTCCAGCCCATG	0.488													8	18					0	0	0.006214	0	0
NDST3	9348	broad.mit.edu	37	4	119174728	119174728	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:119174728G>A	uc003ibx.2	+	13	2877	c.2474G>A	c.(2473-2475)GGA>GAA	p.G825E		NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	825	Lumenal (Potential).|PAPS (By similarity).|Heparan sulfate N-sulfotransferase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						AAGAGCAAAGGAAGAAAATAC	0.318													26	49					0	0	0.001786	0	0
TRPC3	7222	broad.mit.edu	37	4	122835986	122835986	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:122835986G>A	uc003ieg.2	-	4	1364	c.1290C>T	c.(1288-1290)GCC>GCT	p.A430A	TRPC3_uc010inr.2_Intron|TRPC3_uc003ief.2_Silent_p.A357A|TRPC3_uc011cgl.1_Silent_p.A94A	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	345	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						GAAGGCCCAGGGCCACGACCA	0.537													8	10					0	0	0.003080	0	0
ADAD1	132612	broad.mit.edu	37	4	123314757	123314757	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:123314757C>T	uc003ieo.2	+	6	775	c.543C>T	c.(541-543)TTC>TTT	p.F181F	ADAD1_uc003iep.2_Silent_p.F181F|ADAD1_uc003ieq.2_Silent_p.F163F	NM_139243	NP_640336	Q96M93	ADAD1_HUMAN	adenosine deaminase domain containing 1	181					multicellular organismal development|RNA processing	nucleus	adenosine deaminase activity|double-stranded RNA binding				0						CTCCTCCTTTCCCTGCAGAAC	0.343													4	18					0	0	0.000602	0	0
ARHGAP10	79658	broad.mit.edu	37	4	148800397	148800398	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:148800397_148800398GG>AA	uc003ilf.2	+	9	847_848	c.847_848GG>AA	c.(847-849)GGT>AAT	p.G283N	ARHGAP10_uc003ilg.2_5'Flank	NM_024605	NP_078881	A1A4S6	RHG10_HUMAN	Rho GTPase activating protein 10	283	PH.				apoptosis|filopodium assembly|regulation of apoptosis|small GTPase mediated signal transduction	cytosol|perinuclear region of cytoplasm|plasma membrane	cytoskeletal adaptor activity|SH3 domain binding			skin(2)|pancreas(1)|lung(1)	4	all_hematologic(180;0.151)	Renal(17;0.0166)		GBM - Glioblastoma multiforme(119;0.0423)		TGCTCCGTTTGGTTCCAGTTGG	0.386													20	31					0	0	0.004672	0	0
NPY5R	4889	broad.mit.edu	37	4	164272599	164272599	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:164272599G>A	uc003iqn.2	+	4	1356	c.1174G>A	c.(1174-1176)GAT>AAT	p.D392N		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	392	Extracellular (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				TGTGGTAACTGATTTTAATGA	0.338													23	36					0	0	0.002780	0	0
MTNR1A	4543	broad.mit.edu	37	4	187455038	187455038	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr4:187455038G>A	uc003izd.1	-	2	876	c.858C>T	c.(856-858)TTC>TTT	p.F286F		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	286	Helical; Name=7; (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	GGCAGCTGTTGAAATACGCCA	0.507													17	52					0	0	0.007413	0	0
DNAH5	1767	broad.mit.edu	37	5	13839615	13839615	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:13839615G>A	uc003jfd.2	-	35	5774	c.5732C>T	c.(5731-5733)CCC>CTC	p.P1911L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1911	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AAAGTCCATGGGACTCTTGAT	0.358									Kartagener_syndrome				3	16					0	0	0.004672	0	0
UGT3A1	133688	broad.mit.edu	37	5	35954507	35954507	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:35954507C>T	uc003jjv.1	-	7	1526	c.1369G>A	c.(1369-1371)GGC>AGC	p.G457S	UGT3A1_uc003jjw.1_RNA	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	457	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TCGATCCAGCCCACCAGCCGC	0.607													6	18					0	0	0.001168	0	0
NIPBL	25836	broad.mit.edu	37	5	36995774	36995774	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:36995774G>A	uc003jkl.3	+	11	3671	c.3172G>A	c.(3172-3174)GAA>AAA	p.E1058K	NIPBL_uc003jkk.3_Missense_Mutation_p.E1058K|NIPBL_uc003jkm.1_Missense_Mutation_p.E937K	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1058					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			ACTCCTGGCAGAAATTGAGTC	0.338													7	15					0	0	0.006214	0	0
CARD6	84674	broad.mit.edu	37	5	40854355	40854355	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:40854355C>T	uc003jmg.2	+	3	2996	c.2921C>T	c.(2920-2922)TCC>TTC	p.S974F		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	974	Pro-rich.				apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						CAGACAAAATCCTGTCAGTCC	0.522													21	136					0	0	0.001882	0	0
DDX4	54514	broad.mit.edu	37	5	55081648	55081648	+	Nonsense_Mutation	SNP	C	G	G	rs146554855		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:55081648C>G	uc003jqg.3	+	13	887	c.813C>G	c.(811-813)TAC>TAG	p.Y271*	DDX4_uc010ivz.2_Nonsense_Mutation_p.Y251*|DDX4_uc003jqh.3_Nonsense_Mutation_p.Y237*|DDX4_uc003jqj.2_Nonsense_Mutation_p.Y122*	NM_001136034	NP_001129506	Q9NQI0	DDX4_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform	271					multicellular organismal development|sperm motility	perinuclear region of cytoplasm|pi-body|piP-body	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|skin(1)	2		Lung NSC(810;6.93e-05)|all_neural(839;0.00409)|Prostate(74;0.0107)|Breast(144;0.0544)|Ovarian(174;0.223)				TCGACAAATACGACACTATTC	0.433													4	13					0	0	0.000248	0	0
CCDC125	202243	broad.mit.edu	37	5	68590651	68590651	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:68590651G>A	uc003jvv.1	-	8	936	c.893C>T	c.(892-894)ACT>ATT	p.T298I	CCDC125_uc003jvx.1_Missense_Mutation_p.T297I|CCDC125_uc003jvy.1_RNA|CCDC125_uc003jvw.2_Missense_Mutation_p.T173I	NM_176816	NP_789786	Q86Z20	CC125_HUMAN	coiled-coil domain containing 125	298	Potential.					cytoplasm					0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;2.2e-56)|Epithelial(20;2.31e-52)|all cancers(19;5.85e-48)|Lung(70;0.0183)		CAGTTTCCGAGTGGATGCTGC	0.453													40	117					0	0	0.003610	0	0
ZNF608	57507	broad.mit.edu	37	5	123977034	123977034	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:123977034G>A	uc003ktq.1	-	7	4484	c.4361C>T	c.(4360-4362)CCC>CTC	p.P1454L	ZNF608_uc003ktr.1_Intron|ZNF608_uc003ktp.1_Missense_Mutation_p.P149L	NM_020747	NP_065798	Q9ULD9	ZN608_HUMAN	zinc finger protein 608	1454						intracellular	zinc ion binding			skin(3)|ovary(2)|lung(1)	6		all_cancers(142;0.186)|Prostate(80;0.081)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.00126)|Epithelial(69;0.00238)|all cancers(49;0.00783)		CTGGCCGAAGGGGGAGTGGCG	0.572													13	54					0	0	0.001368	0	0
ACSL6	23305	broad.mit.edu	37	5	131329801	131329801	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:131329801G>A	uc010jdo.1	-	2	201	c.118C>T	c.(118-120)CTT>TTT	p.L40F	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.L65F|ACSL6_uc003kvy.1_Missense_Mutation_p.L65F|ACSL6_uc003kwb.2_Intron|ACSL6_uc003kvz.1_Intron|ACSL6_uc003kwa.1_Missense_Mutation_p.L51F|ACSL6_uc003kwc.1_Intron|ACSL6_uc003kwd.1_Missense_Mutation_p.L40F|ACSL6_uc010jdn.1_Missense_Mutation_p.L40F	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	40	Helical; Signal-anchor for type III membrane protein; (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CAGTAGGCAAGGATGGCAGCC	0.587													9	43					0	0	0.008291	0	0
TCF7	6932	broad.mit.edu	37	5	133473780	133473780	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:133473780C>T	uc003kyt.2	+	4	668	c.472C>T	c.(472-474)CCC>TCC	p.P158S	TCF7_uc003kyu.1_Missense_Mutation_p.P43S|TCF7_uc003kyv.2_Missense_Mutation_p.P43S|TCF7_uc003kyw.2_Missense_Mutation_p.P43S|TCF7_uc003kyx.2_5'UTR|TCF7_uc003kyy.2_Missense_Mutation_p.P43S|TCF7_uc003kyz.2_Missense_Mutation_p.P43S|TCF7_uc003kza.2_Missense_Mutation_p.P43S	NM_003202	NP_003193	P36402	TCF7_HUMAN	transcription factor 7 (T-cell specific,	158					cellular response to interleukin-4|immune response|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription regulatory region DNA binding				0		Breast(839;0.058)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			CCACGGTGTCCCCCAACTCTC	0.587													18	27					0	0	0.002780	0	0
TRPC7	57113	broad.mit.edu	37	5	135583207	135583207	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:135583207T>C	uc003lbn.1	-	6	1796	c.1793A>G	c.(1792-1794)AAC>AGC	p.N598S	TRPC7_uc010jef.1_Missense_Mutation_p.N535S|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.N529S|TRPC7_uc010jei.1_Missense_Mutation_p.N474S|TRPC7_uc010jej.1_Missense_Mutation_p.N150S	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	599	Helical; (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGAGTACAGGTTGAACATCCC	0.483													7	31					0	0	0.001984	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307492	140307492	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140307492G>A	uc003lih.2	+	1	1191	c.1015G>A	c.(1015-1017)GAA>AAA	p.E339K	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Missense_Mutation_p.E339K	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	339	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCATGCCCCCGAACTGGACTT	0.522													16	82					0	0	0.004990	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432591	140432591	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140432591G>A	uc003lik.1	+	1	1613	c.1536G>A	c.(1534-1536)GGG>GGA	p.G512G		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	512	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CAGGCAATGGGAAGCTCTACG	0.428													19	22					0	0	0.008871	0	0
PCDHB2	56133	broad.mit.edu	37	5	140476525	140476525	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140476525G>A	uc003lil.2	+	1	2289	c.2151G>A	c.(2149-2151)AGG>AGA	p.R717R	PCDHB2_uc003lim.1_Silent_p.R378R	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	717	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGCTGTGCAGGAGGAGCAGGG	0.682													9	69					0	0	0.002780	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480878	140480878	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140480878G>A	uc003lio.2	+	1	645	c.645G>A	c.(643-645)CTG>CTA	p.L215L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	215	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCACCGCGCTGGACGGCGGCT	0.567													10	24					0	0	0.001368	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481400	140481400	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140481400C>T	uc003lio.2	+	1	1167	c.1167C>T	c.(1165-1167)CTC>CTT	p.L389L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	389	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGAACAATCTCCCCTTCTTCC	0.463													10	26					0	0	0.006214	0	0
PCDHB17	54661	broad.mit.edu	37	5	140536852	140536852	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140536852G>A	uc003lis.2	+	1	1273	c.1273G>A	c.(1273-1275)GAC>AAC	p.D425N		NR_001280				SubName: Full=Protocadherin-psi1;												0						TACTGTCACAGACTTGGGGAC	0.507													5	38					0	0	0.001168	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140724647	140724647	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140724647C>T	uc003ljm.1	+	1	1047	c.1047C>T	c.(1045-1047)ATC>ATT	p.I349I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_Silent_p.I109I|PCDHGA3_uc011dap.1_Silent_p.I349I	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	349	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAATTACAATCACGTCTCTCA	0.463													12	53					0	0	0.001368	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140745253	140745253	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:140745253C>T	uc003lju.1	+	1	1356	c.1356C>T	c.(1354-1356)TTC>TTT	p.F452F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.F452F	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	452	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACCCAATTTCCCTCAAGCCT	0.522													40	72					0	0	0.002852	0	0
PCDH12	51294	broad.mit.edu	37	5	141335230	141335230	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:141335230G>A	uc003llx.2	-	1	3398	c.2187C>T	c.(2185-2187)TTC>TTT	p.F729F		NM_016580	NP_057664	Q9NPG4	PCD12_HUMAN	protocadherin 12 precursor	729	Helical; (Potential).				neuron recognition	integral to plasma membrane	calcium ion binding			ovary(3)	3		all_hematologic(541;0.0999)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATCAACCCGAAGATGCCCA	0.592													9	29					0	0	0.006214	0	0
SLC36A3	285641	broad.mit.edu	37	5	150663628	150663628	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:150663628G>A	uc003ltw.2	-	8	1370	c.951C>T	c.(949-951)ATC>ATT	p.I317I	GM2A_uc011dcs.1_Intron|SLC36A3_uc003ltv.2_Silent_p.I302I|SLC36A3_uc003ltx.2_Silent_p.I358I	NM_181774	NP_861439	Q495N2	S36A3_HUMAN	solute carrier family 36, member 3 isoform 2	317	Extracellular (Potential).					integral to membrane				ovary(2)|skin(1)	3		Medulloblastoma(196;0.109)|all_hematologic(541;0.243)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGTTGAGGGTGATGCTGGCCT	0.408													24	31					0	0	0.005443	0	0
RNF145	153830	broad.mit.edu	37	5	158595967	158595967	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:158595967G>A	uc003lxp.2	-	8	1348	c.1035C>T	c.(1033-1035)ATC>ATT	p.I345I	RNF145_uc011ddy.1_Silent_p.I359I|RNF145_uc003lxo.1_Silent_p.I373I|RNF145_uc011ddz.1_Silent_p.I362I|RNF145_uc010jiq.1_Silent_p.I375I	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	345	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CAATGAAAAGGATAATACTGA	0.438													15	49					0	0	0.002450	0	0
DUSP1	1843	broad.mit.edu	37	5	172197251	172197251	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr5:172197251G>A	uc003mbv.1	-	2	674	c.426C>T	c.(424-426)CCC>CCT	p.P142P	DUSP1_uc011dez.1_5'UTR|DUSP1_uc003mbu.1_Silent_p.P30P	NM_004417	NP_004408	P28562	DUS1_HUMAN	dual specificity phosphatase 1	142					cell cycle|endoderm formation|inactivation of MAPK activity	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|non-membrane spanning protein tyrosine phosphatase activity|protein binding			breast(2)|ovary(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00431)|all_lung(126;0.00729)	all_hematologic(541;4.11e-18)|Breast(839;0.00637)|Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|Ovarian(839;0.15)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)	GBM - Glioblastoma multiforme(465;0.0103)		TGAGCCCCATGGGGGTCGACT	0.552													4	10					0	0	0.000248	0	0
SYCP2L	221711	broad.mit.edu	37	6	10935386	10935386	+	Silent	SNP	T	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:10935386T>G	uc003mzo.2	+	21	2075	c.1779T>G	c.(1777-1779)GCT>GCG	p.A593A	SYCP2L_uc010jow.2_Silent_p.A213A	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	593						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			ATAGTTTTGCTTTTTTGACTG	0.348													11	9					0	0	0.001368	0	0
SCAND3	114821	broad.mit.edu	37	6	28547172	28547172	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:28547172C>T	uc003nlo.2	-	2	1063	c.445G>A	c.(445-447)GAA>AAA	p.E149K		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	149					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ATAGAAACTTCCTGCCCATAT	0.413													26	18					0	0	0.003954	0	0
TNXB	7148	broad.mit.edu	37	6	32037579	32037579	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:32037579C>T	uc003nzl.2	-	15	5540	c.5338G>A	c.(5338-5340)GAG>AAG	p.E1780K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1862	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGCAGCTCCTCCCCCAGACGG	0.577													207	139					0	0	0.003610	0	0
C6orf10	10665	broad.mit.edu	37	6	32317528	32317528	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:32317528C>T	uc011dpy.1	-	9	511	c.338G>A	c.(337-339)CGA>CAA	p.R113Q	C6orf10_uc011dpz.1_Missense_Mutation_p.R90Q	NM_006781	NP_006772	Q5SRN2	CF010_HUMAN	chromosome 6 open reading frame 10	113	Helical; (Potential).					integral to membrane				skin(1)	1						AATACTTGATCGAGACAGTGC	0.383													5	30					0	0	0.000602	0	0
DAXX	1616	broad.mit.edu	37	6	33288198	33288199	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:33288198_33288199GG>AA	uc003oec.2	-	4	1413_1414	c.1209_1210CC>TT	c.(1207-1212)TCCCAC>TCTTAC	p.H404Y	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Missense_Mutation_p.H329Y|DAXX_uc011dre.1_Missense_Mutation_p.H416Y|DAXX_uc003oed.2_Missense_Mutation_p.H404Y|DAXX_uc010juw.2_Missense_Mutation_p.H329Y	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	404	Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						TCTGCAGAGTGGGAAGAGGTGC	0.55			Mis|F|N		Pancreatic neuroendocrine tumors								24	49					0	0	0.004672	0	0
C6orf222	389384	broad.mit.edu	37	6	36287211	36287211	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:36287211G>A	uc003oly.2	-	11	2023	c.1845C>T	c.(1843-1845)AAC>AAT	p.N615N		NM_001010903	NP_001010903	P0C671	CF222_HUMAN	hypothetical protein LOC389384	615										skin(2)|ovary(1)|breast(1)	4						TGGCATGGCTGTTGCTGCCAG	0.562													72	48					0	0	0.003610	0	0
KCNK17	89822	broad.mit.edu	37	6	39272382	39272382	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:39272382G>A	uc003ooo.2	-	3	542	c.402C>T	c.(400-402)ATC>ATT	p.I134I	KCNK17_uc003oop.2_Silent_p.I134I	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	134	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						GGGCAAAGAAGATGCAGAAGA	0.622													67	56					0	0	0.003610	0	0
FRS3	10817	broad.mit.edu	37	6	41738653	41738653	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:41738653C>T	uc003orc.1	-	7	1427	c.1183G>A	c.(1183-1185)GGC>AGC	p.G395S		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	395					fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTTGGGGAGCCGCGGCGGCGG	0.662													48	25					0	0	0.003610	0	0
MEP1A	4224	broad.mit.edu	37	6	46800981	46800981	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:46800981C>T	uc010jzh.1	+	11	1357	c.1315C>T	c.(1315-1317)CGG>TGG	p.R439W	MEP1A_uc011dwg.1_Missense_Mutation_p.R161W|MEP1A_uc011dwh.1_Missense_Mutation_p.R467W|MEP1A_uc011dwi.1_Missense_Mutation_p.R339W	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	439	MATH.|Extracellular (Potential).				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			CTGGACAGTCCGGAATTTCTC	0.512													23	19					0	0	0.004656	0	0
C6orf150	115004	broad.mit.edu	37	6	74155279	74155279	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:74155279G>A	uc003pgx.1	-	2	988	c.849C>T	c.(847-849)ATC>ATT	p.I283I		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	283											0						CTTCCTTAATGATTTTCCTAA	0.308													12	17					0	0	0.001368	0	0
C6orf167	253714	broad.mit.edu	37	6	97599671	97599671	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:97599671G>A	uc003ppb.2	-	23	3724	c.3458C>T	c.(3457-3459)TCC>TTC	p.S1153F	C6orf167_uc011eaf.1_Missense_Mutation_p.S1113F	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	1153					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		CAGCTGGGAGGAAGGTTCTTC	0.428													12	37					0	0	0.002450	0	0
SERINC1	57515	broad.mit.edu	37	6	122767981	122767981	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:122767981G>A	uc003pyy.1	-	9	1234	c.1164C>T	c.(1162-1164)TTC>TTT	p.F388F	SERINC1_uc003pyx.1_RNA	NM_020755	NP_065806	Q9NRX5	SERC1_HUMAN	serine incorporator 1	388	Helical; (Potential).				phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	L-serine transmembrane transporter activity|protein binding			ovary(1)	1				GBM - Glioblastoma multiforme(226;0.126)		TGAAGTGAAAGAAGGAATAAC	0.413													5	15					0	0	0.000602	0	0
EYA4	2070	broad.mit.edu	37	6	133844294	133844294	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr6:133844294A>C	uc003qec.3	+	18	2175	c.1717A>C	c.(1717-1719)ATT>CTT	p.I573L	EYA4_uc011ecq.1_Missense_Mutation_p.I519L|EYA4_uc011ecr.1_Missense_Mutation_p.I525L|EYA4_uc003qed.3_Missense_Mutation_p.I573L|EYA4_uc003qee.3_Missense_Mutation_p.I550L|EYA4_uc011ecs.1_Missense_Mutation_p.I579L|uc003qeg.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	573					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		CATTGAGAATATTTACAGTGC	0.388													8	13					0	0	0.004482	0	0
C1GALT1	56913	broad.mit.edu	37	7	7278375	7278375	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:7278375C>T	uc010ktn.2	+	3	933	c.710C>T	c.(709-711)TCC>TTC	p.S237F	C1GALT1_uc003sra.2_Missense_Mutation_p.S237F|C1GALT1_uc010kto.1_Missense_Mutation_p.S237F	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	237	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		CATAGTTCCTCCATTGAAGAC	0.403													9	26					0	0	0.004482	0	0
MEOX2	4223	broad.mit.edu	37	7	15652164	15652164	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:15652164G>A	uc003stc.2	-	3	1044	c.763C>T	c.(763-765)CGG>TGG	p.R255W	MEOX2_uc011jxw.1_Missense_Mutation_p.R255W	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	255					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		TCCTTTTCCCGAGCCGCAGCT	0.512													35	45					0	0	0.003755	0	0
CDK13	8621	broad.mit.edu	37	7	40134017	40134017	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:40134017G>A	uc003thh.3	+	14	4259	c.3977G>A	c.(3976-3978)GGA>GAA	p.G1326E	CDK13_uc003thi.3_Missense_Mutation_p.G1266E|CDK13_uc003thj.2_Missense_Mutation_p.G377E|CDK13_uc003thk.2_Missense_Mutation_p.G259E	NM_003718	NP_003709	Q14004	CDK13_HUMAN	cell division cycle 2-like 5 isoform 1	1326					alternative nuclear mRNA splicing, via spliceosome|hemopoiesis|interspecies interaction between organisms|phosphorylation of RNA polymerase II C-terminal domain|positive regulation of cell proliferation|regulation of mitosis	nuclear cyclin-dependent protein kinase holoenzyme complex|nuclear speck	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|skin(2)|ovary(1)	5						TATCAAGCAGGAGACACTTAC	0.493													18	46					0	0	0.006122	0	0
GTF2IRD2P1	401375	broad.mit.edu	37	7	72657713	72657713	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:72657713G>A	uc003txs.1	-	13	2199	c.1271C>T	c.(1270-1272)TCC>TTC	p.S424F	FKBP6_uc003twz.2_Intron	NR_002164				RecName: Full=General transcription factor II-I repeat domain-containing protein 2B; AltName: Full=GTF2I repeat domain-containing protein 2B; AltName: Full=Transcription factor GTF2IRD2-beta;												0						ttcatttctggaaaccaattt	0													51	74					0	0	0.003610	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73944209	73944209	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:73944209C>T	uc003uaq.2	+	9	1629	c.1236C>T	c.(1234-1236)ATC>ATT	p.I412I	GTF2IRD1_uc010lbq.2_Silent_p.I444I|GTF2IRD1_uc003uap.2_Silent_p.I412I|GTF2IRD1_uc003uar.1_Silent_p.I412I	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	412	GTF2I-like 2.					nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						TGAAGCGGATCCTGGAGGAGC	0.433													20	29					0	0	0.002780	0	0
PCLO	27445	broad.mit.edu	37	7	82581797	82581797	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:82581797G>A	uc003uhx.2	-	5	8761	c.8472C>T	c.(8470-8472)CTC>CTT	p.L2824L	PCLO_uc003uhv.2_Silent_p.L2824L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2755					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGTAAGTTGGAGTGGTGTTG	0.468													11	14					0	0	0.001368	0	0
PON3	5446	broad.mit.edu	37	7	94991698	94991698	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:94991698G>A	uc003unt.2	-	8	907	c.882C>T	c.(880-882)AAC>AAT	p.N294N	PON1_uc011kih.1_Intron	NM_000940	NP_000931	Q15166	PON3_HUMAN	paraoxonase 3	294					aromatic compound catabolic process|carboxylic acid catabolic process|response to external stimulus	extracellular space	aryldialkylphosphatase activity|arylesterase activity|metal ion binding|protein homodimerization activity			ovary(1)	1	all_cancers(62;1.04e-10)|all_epithelial(64;3.67e-09)|Lung NSC(181;0.239)		STAD - Stomach adenocarcinoma(171;0.0151)			GGTCCTCAGGGTTATAGTTCA	0.463													10	18					0	0	0.008291	0	0
TMEM130	222865	broad.mit.edu	37	7	98445848	98445848	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:98445848G>A	uc003upo.2	-	8	1328	c.1139C>T	c.(1138-1140)TCC>TTC	p.S380F	TMEM130_uc011kiq.1_Intron|TMEM130_uc011kir.1_Intron|TMEM130_uc003upn.2_Intron	NM_001134450	NP_001127922	Q8N3G9	TM130_HUMAN	transmembrane protein 130 isoform a	380	Cytoplasmic (Potential).					Golgi membrane|integral to membrane				ovary(1)|central_nervous_system(1)	2	all_cancers(62;4.05e-09)|all_epithelial(64;2.62e-09)|Lung NSC(181;0.01)|all_lung(186;0.0115)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AGACATGGGGGAAAAGTCAAA	0.567													12	29					0	0	0.001855	0	0
ARPC1B	10095	broad.mit.edu	37	7	98988584	98988585	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:98988584_98988585CC>TT	uc003upz.2	+	6	658_659	c.569_570CC>TT	c.(568-570)CCC>CTT	p.P190L	ARPC1B_uc003uqa.2_Missense_Mutation_p.P190L|ARPC1B_uc003uqb.2_Missense_Mutation_p.P190L|ARPC1B_uc003uqc.2_Missense_Mutation_p.P190L|ARPC1B_uc003uqd.2_Missense_Mutation_p.P2L	NM_005720	NP_005711	O15143	ARC1B_HUMAN	actin related protein 2/3 complex subunit 1B	190					cellular component movement|regulation of actin filament polymerization	Arp2/3 protein complex|cytoplasm	actin binding|structural constituent of cytoskeleton				0	all_cancers(62;3.49e-09)|all_epithelial(64;2.57e-10)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)		STAD - Stomach adenocarcinoma(171;0.215)			TCCAAGATGCCCTTTGGGGAAC	0.579													25	55					0	0	0.004672	0	0
ZAN	7455	broad.mit.edu	37	7	100386926	100386926	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:100386926C>T	uc003uwj.2	+	40	7479	c.7314C>T	c.(7312-7314)ACC>ACT	p.T2438T	ZAN_uc003uwk.2_Silent_p.T2438T|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA|ZAN_uc011kke.1_Silent_p.T488T	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	2438	VWFD 4.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			ACCTGGTCACCGACTTTGAGC	0.542													17	47					0	0	0.006122	0	0
LRWD1	222229	broad.mit.edu	37	7	102108811	102108811	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:102108811G>A	uc003uzn.2	+	7	1044	c.906G>A	c.(904-906)CCG>CCA	p.P302P	LRWD1_uc003uzo.2_Silent_p.P150P	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	302					chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						CCTTCGAGCCGGCCTGGGAGG	0.652													8	15					0	0	0.008291	0	0
RELN	5649	broad.mit.edu	37	7	103126753	103126753	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:103126753C>T	uc003vca.2	-	61	10034	c.9874G>A	c.(9874-9876)GGA>AGA	p.G3292R	RELN_uc010liz.2_Missense_Mutation_p.G3292R	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	3292					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CAGCCACTTCCTATGACTCCA	0.507													19	32					0	0	0.008871	0	0
CDHR3	222256	broad.mit.edu	37	7	105672950	105672950	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:105672950G>A	uc003vdl.3	+	19	2573	c.2465G>A	c.(2464-2466)CGC>CAC	p.R822H	CDHR3_uc003vdk.2_3'UTR|CDHR3_uc003vdm.3_Missense_Mutation_p.R809H|CDHR3_uc011klt.1_Missense_Mutation_p.R734H|CDHR3_uc003vdn.2_3'UTR	NM_152750	NP_689963	Q6ZTQ4	CDHR3_HUMAN	hypothetical protein LOC222256 precursor	822	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)	1						GCTGCCCCACGCAGAGTCACT	0.527													11	31					0	0	0.000978	0	0
C7orf58	79974	broad.mit.edu	37	7	120906769	120906769	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:120906769C>T	uc003vjq.3	+	20	2987	c.2540C>T	c.(2539-2541)CCC>CTC	p.P847L		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	847						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					AGATCACGTCCCCTAGAGAAT	0.398													7	12					0	0	0.003080	0	0
FLNC	2318	broad.mit.edu	37	7	128480207	128480207	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:128480207G>A	uc003vnz.3	+	9	1751	c.1542G>A	c.(1540-1542)AAG>AAA	p.K514K	FLNC_uc003voa.3_Silent_p.K514K	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	514	Filamin 3.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TCACGGTCAAGGGGCCAAGTG	0.627													27	67					0	0	0.006320	0	0
CHRM2	1129	broad.mit.edu	37	7	136700910	136700910	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:136700910G>A	uc003vtf.1	+	4	1921	c.1298G>A	c.(1297-1299)AGC>AAC	p.S433N	CHRM2_uc003vtg.1_Missense_Mutation_p.S433N|CHRM2_uc003vtj.1_Missense_Mutation_p.S433N|CHRM2_uc003vtk.1_Missense_Mutation_p.S433N|CHRM2_uc003vtl.1_Missense_Mutation_p.S433N|CHRM2_uc003vtm.1_Missense_Mutation_p.S433N|CHRM2_uc003vti.1_Missense_Mutation_p.S433N|CHRM2_uc003vto.1_Missense_Mutation_p.S433N|CHRM2_uc003vtn.1_Missense_Mutation_p.S433N|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	433	Helical; Name=7; (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TACATCAACAGCACTATCAAC	0.453													13	19					0	0	0.002450	0	0
MGAM	8972	broad.mit.edu	37	7	141731504	141731504	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:141731504C>T	uc003vwy.2	+	13	1549	c.1495C>T	c.(1495-1497)CCT>TCT	p.P499S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	499	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AACTGTGTTTCCTGATTATAC	0.363													13	31					0	0	0.004990	0	0
MGAM	8972	broad.mit.edu	37	7	141760163	141760163	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:141760163G>A	uc003vwy.2	+	34	4166	c.4112G>A	c.(4111-4113)AGC>AAC	p.S1371N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1371	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GACTGGGACAGCCAAGTGGAG	0.493													7	16					0	0	0.004482	0	0
ZYX	7791	broad.mit.edu	37	7	143087006	143087006	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:143087006G>A	uc003wcw.2	+	9	1705	c.1550G>A	c.(1549-1551)CGA>CAA	p.R517Q	ZYX_uc011ktd.1_Missense_Mutation_p.R360Q|ZYX_uc003wcx.2_Missense_Mutation_p.R517Q|ZYX_uc011kte.1_Missense_Mutation_p.R486Q|ZYX_uc011ktf.1_Missense_Mutation_p.R360Q	NM_001010972	NP_001010972	Q15942	ZYX_HUMAN	zyxin	517	LIM zinc-binding 3.				cell adhesion|cell-cell signaling|interspecies interaction between organisms|signal transduction	cell-cell adherens junction|cytoplasm|focal adhesion|integral to plasma membrane|nucleus|stress fiber	protein binding|zinc ion binding				0	Melanoma(164;0.205)					GAGCCTGGCCGAGATGAGACT	0.597													21	56					0	0	0.001882	0	0
OR2A12	346525	broad.mit.edu	37	7	143792752	143792752	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:143792752C>T	uc011kty.1	+	1	552	c.552C>T	c.(550-552)TTC>TTT	p.F184F		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					TGTCCGTATTCAAATTGGCCT	0.493													15	49					0	0	0.002450	0	0
OR2A12	346525	broad.mit.edu	37	7	143793023	143793023	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:143793023C>T	uc011kty.1	+	1	823	c.823C>T	c.(823-825)CTG>TTG	p.L275L		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					GATCCTTTCCCTGTTTTACAG	0.517													26	82					0	0	0.001786	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146997268	146997268	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:146997268C>T	uc003weu.1	+	9	1900	c.1384C>T	c.(1384-1386)CGC>TGC	p.R462C		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	462	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GCACGAGGTTCGCTTCCTAGC	0.403										HNSCC(39;0.1)			14	17					0	0	0.007413	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147092827	147092827	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:147092827G>A	uc003weu.1	+	10	2141	c.1625G>A	c.(1624-1626)GGA>GAA	p.G542E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	542	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AGGAAGCCGGGAAGTTTCGCG	0.438										HNSCC(39;0.1)			11	32					0	0	0.000978	0	0
ABP1	26	broad.mit.edu	37	7	150557656	150557656	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:150557656G>A	uc003why.1	+	5	6142	c.1924G>A	c.(1924-1926)GAC>AAC	p.D642N	ABP1_uc003whz.1_Missense_Mutation_p.D642N|ABP1_uc003wia.1_Missense_Mutation_p.D661N	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	642					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CCACCAGAACGACCCCTGGCA	0.612													30	59					0	0	0.001786	0	0
VIPR2	7434	broad.mit.edu	37	7	158829468	158829468	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr7:158829468G>A	uc003woh.2	-	7	909	c.723C>T	c.(721-723)TTC>TTT	p.F241F	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	241	Helical; Name=4; (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		GGTAGGCCAGGAAGCACCTTC	0.582													8	20					0	0	0.003080	0	0
MYOM2	9172	broad.mit.edu	37	8	2054304	2054304	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:2054304C>T	uc003wpx.3	+	23	3053	c.2915C>T	c.(2914-2916)CCG>CTG	p.P972L	MYOM2_uc011kwi.1_Missense_Mutation_p.P397L	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	972	Ig-like C2-type 3.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		TTAAAGAATCCGGATAAGGAG	0.408													6	33					0	0	0.001168	0	0
SH2D4A	63898	broad.mit.edu	37	8	19218823	19218823	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:19218823C>T	uc003wzb.2	+	6	1040	c.704C>T	c.(703-705)TCT>TTT	p.S235F	SH2D4A_uc011kym.1_Missense_Mutation_p.S190F|SH2D4A_uc003wzc.2_Missense_Mutation_p.S235F	NM_022071	NP_071354	Q9H788	SH24A_HUMAN	SH2 domain containing 4A	235						cytoplasm|nucleus	protein binding				0				Colorectal(111;0.0732)		TGGCAGGCATCTCGTGAGTAC	0.413													3	8					0	0	0.000248	0	0
SCARA5	286133	broad.mit.edu	37	8	27764740	27764740	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:27764740G>A	uc003xgj.2	-	6	1461	c.1021C>T	c.(1021-1023)CCA>TCA	p.P341S	SCARA5_uc010luz.2_Missense_Mutation_p.P116S|SCARA5_uc003xgk.2_Missense_Mutation_p.P298S|SCARA5_uc003xgl.2_Missense_Mutation_p.P341S	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	341	Collagen-like.|Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		GGCAATCCTGGGGTACCTCTC	0.577													22	43					0	0	0.001882	0	0
EXTL3	2137	broad.mit.edu	37	8	28575288	28575288	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:28575288G>A	uc003xgz.1	+	3	2305	c.1712G>A	c.(1711-1713)GGG>GAG	p.G571E		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	571	Lumenal (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		GCTGACAACGGGGACCTGGAC	0.627													16	26					0	0	0.004990	0	0
RP1	6101	broad.mit.edu	37	8	55537893	55537893	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:55537893C>T	uc003xsd.1	+	4	1599	c.1451C>T	c.(1450-1452)TCA>TTA	p.S484L	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	484					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGACAGTTTTCATATAGTGAA	0.373													5	27					0	0	0.000602	0	0
KCNB2	9312	broad.mit.edu	37	8	73849879	73849879	+	Missense_Mutation	SNP	G	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:73849879G>T	uc003xzb.2	+	3	2877	c.2289G>T	c.(2287-2289)CAG>CAT	p.Q763H		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	763	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			CCCCCTCCCAGGGAGACAGAC	0.582													14	58					2.61681e-11	4.496e-11	0.002450	1	0
ZNF704	619279	broad.mit.edu	37	8	81599523	81599523	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:81599523C>A	uc003yby.1	-	4	728	c.496G>T	c.(496-498)GGC>TGC	p.G166C		NM_001033723	NP_001028895	Q6ZNC4	ZN704_HUMAN	zinc finger protein 704	166						intracellular	zinc ion binding				0	all_cancers(3;8.53e-08)|all_epithelial(4;4.59e-10)|Breast(3;2.56e-06)|Lung NSC(7;2.58e-06)|all_lung(9;9.4e-06)		BRCA - Breast invasive adenocarcinoma(6;0.00401)|Epithelial(68;0.00448)|all cancers(69;0.0277)			TCGTCGATGCCGTCGTCTGGC	0.657											OREG0018841	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	60					2.61681e-11	4.496e-11	0.002450	1	0
CNGB3	54714	broad.mit.edu	37	8	87679189	87679189	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:87679189C>T	uc003ydx.2	-	6	862	c.816G>A	c.(814-816)CAG>CAA	p.Q272Q	CNGB3_uc010maj.2_Silent_p.Q134Q	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	272	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GGAGTCTGGGCTGGATAAATA	0.418													7	19					0	0	0.008291	0	0
VPS13B	157680	broad.mit.edu	37	8	100789096	100789096	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:100789096C>T	uc003yiv.2	+	41	7527	c.7416C>T	c.(7414-7416)ACC>ACT	p.T2472T	VPS13B_uc003yiw.2_Silent_p.T2447T	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	2472					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			CCTGCTTTACCCCATGGTTTG	0.488													7	26					0	0	0.001984	0	0
CSMD3	114788	broad.mit.edu	37	8	113988232	113988232	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:113988232C>T	uc003ynu.2	-	7	1335	c.1176G>A	c.(1174-1176)GAG>GAA	p.E392E	CSMD3_uc003ynt.2_Silent_p.E352E|CSMD3_uc011lhx.1_Intron	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	392	Extracellular (Potential).					integral to membrane|plasma membrane		p.E392K(1)		ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTCGCTGTTCCTCGGAAAGTC	0.498										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			14	25					0	0	0.002450	0	0
ATAD2	29028	broad.mit.edu	37	8	124358477	124358477	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:124358477C>T	uc003yqh.3	-	18	2489	c.2381G>A	c.(2380-2382)AGA>AAA	p.R794K	ATAD2_uc011lii.1_Missense_Mutation_p.R585K|ATAD2_uc003yqi.3_RNA|ATAD2_uc003yqj.2_Missense_Mutation_p.R794K	NM_014109	NP_054828	Q6PL18	ATAD2_HUMAN	ATPase family, AAA domain containing 2	794					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleus	ATP binding|ATPase activity			ovary(2)	2	Lung NSC(37;1.25e-09)|Ovarian(258;0.00838)		STAD - Stomach adenocarcinoma(47;0.00288)			TATCAATATTCTTGGTCGAAA	0.343													7	26					0	0	0.001984	0	0
LRRC6	23639	broad.mit.edu	37	8	133584655	133584655	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:133584655C>T	uc003ytk.2	-	12	1374	c.1300G>A	c.(1300-1302)GAG>AAG	p.E434K	LRRC6_uc003ytl.2_RNA	NM_012472	NP_036604	Q86X45	LRRC6_HUMAN	leucine rich repeat containing 6	434						cytoplasm				ovary(1)|kidney(1)	2	Ovarian(258;0.00352)|Esophageal squamous(12;0.00507)|all_neural(3;0.0052)|Medulloblastoma(3;0.0922)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TGTTTTTTCTCTTGAACTATG	0.423													11	60					0	0	0.008291	0	0
TRAPPC9	83696	broad.mit.edu	37	8	140743318	140743318	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:140743318C>T	uc003yvj.2	-	23	3567	c.3433G>A	c.(3433-3435)GAG>AAG	p.E1145K	TRAPPC9_uc003yvh.2_Missense_Mutation_p.E1243K	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	1145					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GCCTGCGCCTCCAGGGCACAC	0.642													10	20					0	0	0.006214	0	0
FLJ43860	389690	broad.mit.edu	37	8	142458032	142458032	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:142458032C>T	uc003ywi.2	-	23	2875	c.2794G>A	c.(2794-2796)GAG>AAG	p.E932K	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	932							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			ACGGCCGCCTCCTGGGCCTGC	0.647													5	13					0	0	0.001168	0	0
INSL6	11172	broad.mit.edu	37	9	5185341	5185341	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:5185341G>A	uc003zix.2	-	1	278	c.262C>T	c.(262-264)CCG>TCG	p.P88S		NM_007179	NP_009110	Q9Y581	INSL6_HUMAN	insulin-like 6 precursor	88						extracellular region	hormone activity				0	all_hematologic(13;0.137)	Breast(48;0.147)|Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0128)|Lung(218;0.145)		CCCCGGGCCGGGGAAGCGGTT	0.522													27	89					0	0	0.002836	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971120	21971120	+	Nonsense_Mutation	SNP	G	A	A	rs121913388		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:21971120G>A	uc003zpk.2	-	2	450	c.238C>T	c.(238-240)CGA>TGA	p.R80*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.P135L	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	80	ANK 3.		R -> P (in CMM2; loss of CDK4 binding).|R -> L (in a head and neck tumor).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.R80*(88)|p.?(13)|p.R80Q(2)|p.P135L(2)|p.T79fs*37(1)|p.L65fs*38(1)|p.R80fs*66(1)|p.A76fs*64(1)|p.T79fs*65(1)|p.E61_L94del(1)|p.A68fs*3(1)|p.R80fs*34(1)|p.R80?(1)|p.R80L(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		TGCACGGGTCGGGTGAGAGTG	0.726	R80*(MEWO_SKIN)|R80*(HSC4_UPPER_AERODIGESTIVE_TRACT)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			43	41					0	0	0.003610	0	0
KIF24	347240	broad.mit.edu	37	9	34259683	34259683	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:34259683G>A	uc003zua.3	-	10	1656	c.1536C>T	c.(1534-1536)ATC>ATT	p.I512I	KIF24_uc010mkb.2_Silent_p.I543I	NM_194313	NP_919289	Q5T7B8	KIF24_HUMAN	kinesin family member 24	512					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			central_nervous_system(1)	1			LUSC - Lung squamous cell carcinoma(29;0.0107)			TGGCATTGCCGATGAAAGAGT	0.488													57	60					0	0	0.003610	0	0
SIGMAR1	10280	broad.mit.edu	37	9	34637410	34637410	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:34637410G>A	uc003zvb.2	-	2	233	c.159C>T	c.(157-159)GAC>GAT	p.D53D	SIGMAR1_uc003zva.3_Silent_p.D33D|SIGMAR1_uc003zuz.2_5'UTR|SIGMAR1_uc003zvc.2_Silent_p.D53D|SIGMAR1_uc003zvd.2_RNA|SIGMAR1_uc011loo.1_Silent_p.D53D	NM_005866	NP_005857	Q99720	SGMR1_HUMAN	sigma non-opioid intracellular receptor 1	53	Extracellular (Potential).				ergosterol biosynthetic process|lipid transport	cell junction|endoplasmic reticulum membrane|growth cone|integral to plasma membrane|lipid particle|nuclear inner membrane|nuclear outer membrane	C-8 sterol isomerase activity|drug binding				0					Dextromethorphan(DB00514)	CCAGCTCGTGGTCCAGCCCTG	0.706													11	9					0	0	0.000978	0	0
FBXO10	26267	broad.mit.edu	37	9	37521707	37521707	+	Nonsense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:37521707G>A	uc004aab.2	-	8	2108	c.2059C>T	c.(2059-2061)CGA>TGA	p.R687*	FBXO10_uc004aac.2_Nonsense_Mutation_p.R703*|FBXO10_uc004aad.2_Nonsense_Mutation_p.R237*	NM_012166	NP_036298	Q9UK96	FBX10_HUMAN	F-box protein 10	687						ubiquitin ligase complex	ubiquitin-protein ligase activity			lung(5)	5				GBM - Glioblastoma multiforme(29;0.0107)		CTGTGGCCTCGAGGTAACTCG	0.602													17	11					0	0	0.001523	0	0
C9orf79	286234	broad.mit.edu	37	9	90499936	90499936	+	Silent	SNP	G	A	A	rs147565798		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:90499936G>A	uc004app.3	+	4	569	c.534G>A	c.(532-534)GGG>GGA	p.G178G	C9orf79_uc004apo.1_Intron	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	178	Pro-rich.					integral to membrane				ovary(3)	3						AGCCGCATGGGAAATGCATGC	0.642													16	37					0	0	0.004990	0	0
TSTD2	158427	broad.mit.edu	37	9	100388231	100388231	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:100388231A>C	uc004axn.2	-	3	702	c.214T>G	c.(214-216)TTT>GTT	p.F72V	TSTD2_uc004axo.2_5'UTR|TSTD2_uc004axp.1_5'UTR	NM_139246	NP_640339	Q5T7W7	TSTD2_HUMAN	thiosulfate sulfurtransferase (rhodanese)-like	72										ovary(2)	2						TTACATTCAAAACTCCTTTTT	0.373													3	18					0	0	0.000248	0	0
OR13C8	138802	broad.mit.edu	37	9	107332290	107332290	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:107332290C>T	uc011lvo.1	+	1	842	c.842C>T	c.(841-843)TCC>TTC	p.S281F		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCCCTCATCTCCCTTTTCTAT	0.413													17	17					0	0	0.006122	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111956662	111956662	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:111956662G>A	uc004bdz.1	-	21	2356	c.2061C>T	c.(2059-2061)CTC>CTT	p.L687L		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	687						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						GGTCTGGAGGGAGGTCGTCTT	0.572													26	32					0	0	0.005443	0	0
ZNF79	7633	broad.mit.edu	37	9	130206524	130206524	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:130206524C>T	uc004bqw.3	+	5	959	c.545C>T	c.(544-546)TCG>TTG	p.S182L	ZNF79_uc011maf.1_Missense_Mutation_p.S158L|ZNF79_uc011mag.1_Missense_Mutation_p.S158L	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	182					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						TTCAAGAACTCGGAAATCCTG	0.488													29	13					0	0	0.007291	0	0
PPP2R4	5524	broad.mit.edu	37	9	131909680	131909681	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:131909680_131909681CC>TT	uc004bxm.1	+	11	1281_1282	c.1014_1015CC>TT	c.(1012-1017)TTCCCT>TTTTCT	p.P339S	PPP2R4_uc004bxl.1_Missense_Mutation_p.P304S|PPP2R4_uc010myr.1_Missense_Mutation_p.P85S|PPP2R4_uc004bxn.1_Missense_Mutation_p.P304S|PPP2R4_uc004bxo.1_Missense_Mutation_p.P262S|PPP2R4_uc011mbp.1_Missense_Mutation_p.P275S|PPP2R4_uc010mys.1_Missense_Mutation_p.P269S|PPP2R4_uc004bxp.2_RNA|PPP2R4_uc004bxq.2_RNA	NM_178001	NP_821068	Q15257	PTPA_HUMAN	protein phosphatase 2A, regulatory subunit B'	339					ATP catabolic process|negative regulation of phosphoprotein phosphatase activity|negative regulation of protein dephosphorylation|positive regulation of apoptosis|positive regulation of phosphoprotein phosphatase activity|positive regulation of protein dephosphorylation	calcium channel complex|cytoplasm|nucleus|protein phosphatase type 2A complex|soluble fraction	ATP binding|peptidyl-prolyl cis-trans isomerase activity|protein heterodimerization activity|protein homodimerization activity|protein phosphatase 2A binding|protein phosphatase type 2A regulator activity|protein tyrosine phosphatase activator activity|receptor binding			ovary(1)|lung(1)|pancreas(1)	3		Medulloblastoma(224;0.235)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0178)		TGGAGAAGTTCCCTGTGATCCA	0.634													10	23					0	0	0.004672	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134458021	134458021	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:134458021C>T	uc004cbc.2	-	22	3055	c.2925G>A	c.(2923-2925)TCG>TCA	p.S975S	RAPGEF1_uc004cbb.2_Silent_p.S993S	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	975	Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		GTTCCACCTCCGAGAGGGCGG	0.572													19	59					0	0	0.003330	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136307632	136307632	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:136307632C>T	uc004cdv.3	+	17	2525	c.2081C>T	c.(2080-2082)CCC>CTC	p.P694L	ADAMTS13_uc004cdp.3_Intron|ADAMTS13_uc004cdt.1_Missense_Mutation_p.P694L|ADAMTS13_uc004cdu.1_Missense_Mutation_p.P663L|ADAMTS13_uc004cdw.3_Missense_Mutation_p.P694L|ADAMTS13_uc004cdx.3_Missense_Mutation_p.P663L|ADAMTS13_uc004cdy.1_Intron|ADAMTS13_uc004cdz.3_Missense_Mutation_p.P364L|ADAMTS13_uc004cds.1_Missense_Mutation_p.P219L|ADAMTS13_uc004cdr.1_Intron	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	694	TSP type-1 2.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GTGCGTGGGCCCTGCTCGGTG	0.667													30	31					0	0	0.003271	0	0
KCNT1	57582	broad.mit.edu	37	9	138657500	138657500	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:138657500G>A	uc011mdq.1	+	13	1305	c.1231G>A	c.(1231-1233)GAG>AAG	p.E411K	KCNT1_uc011mdr.1_Missense_Mutation_p.E238K|KCNT1_uc010nbf.2_Missense_Mutation_p.E366K|KCNT1_uc004cgo.1_Missense_Mutation_p.E160K	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	411						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		GTGCCCCACGGAGATGGATGT	0.662													4	9					0	0	0.000248	0	0
PMPCA	23203	broad.mit.edu	37	9	139313549	139313549	+	Silent	SNP	C	T	T	rs148017285	byFrequency	TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:139313549C>T	uc004chl.2	+	11	1259	c.1254C>T	c.(1252-1254)ACC>ACT	p.T418T	PMPCA_uc010nbl.2_Silent_p.T318T|PMPCA_uc011mdz.1_Silent_p.T287T|PMPCA_uc004chm.1_Silent_p.T168T|PMPCA_uc004chn.1_Silent_p.T15T	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	418					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		TGGGCGGAACCGTGGACACGG	0.557													24	27					0	0	0.003954	0	0
TRAF2	7186	broad.mit.edu	37	9	139820223	139820223	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr9:139820223C>T	uc010nbu.2	+	12	1549	c.1376C>T	c.(1375-1377)CCA>CTA	p.P459L	TRAF2_uc004cjv.2_Missense_Mutation_p.P459L|TRAF2_uc011mek.1_Missense_Mutation_p.P448L|TRAF2_uc010nbw.2_Missense_Mutation_p.P434L	NM_021138	NP_066961	Q12933	TRAF2_HUMAN	TNF receptor-associated factor 2	459	MATH.				activation of caspase activity|activation of NF-kappaB-inducing kinase activity|activation of pro-apoptotic gene products|cellular protein complex assembly|induction of apoptosis by extracellular signals|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of T cell cytokine production|protein autoubiquitination|protein homotrimerization|protein K63-linked ubiquitination|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|internal side of plasma membrane	CD40 receptor binding|enzyme binding|protein binding|signal transducer activity|sphingolipid binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)|skin(1)	4	all_cancers(76;0.11)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.229)	OV - Ovarian serous cystadenocarcinoma(145;4.48e-06)|Epithelial(140;9.55e-06)		TTTCAGAGGCCAGTCAACGAC	0.557													19	17					0	0	0.006122	0	0
SLC25A6	293	broad.mit.edu	37	X	1508348	1508348	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:1508348G>A	uc004cpt.2	-	2	480	c.384C>T	c.(382-384)CTC>CTT	p.L128L	SLC25A6_uc004cpu.2_RNA	NM_001636	NP_001627	P12236	ADT3_HUMAN	adenine nucleotide translocator 3	128	Solcar 2.|Helical; Name=3; (By similarity).				active induction of host immune response by virus|apoptosis|energy reserve metabolic process|regulation of insulin secretion|viral infectious cycle	integral to membrane|mitochondrial inner membrane presequence translocase complex	ATP:ADP antiporter activity|protein binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)			Clodronate(DB00720)	ACACGAAGCAGAGGGAGGTCG	0.662													11	113					0	0	0.000978	0	0
RPS6KA3	6197	broad.mit.edu	37	X	20212370	20212370	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:20212370C>T	uc004czu.2	-	6	423	c.423G>A	c.(421-423)GGG>GGA	p.G141G	RPS6KA3_uc011mjk.1_Silent_p.G112G|RPS6KA3_uc004czv.2_Silent_p.G129G|RPS6KA3_uc011mjl.1_Silent_p.G113G|RPS6KA3_uc011mjm.1_Silent_p.G113G	NM_004586	NP_004577	P51812	KS6A3_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	141	Protein kinase 1.				axon guidance|central nervous system development|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|skeletal system development|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(4)|stomach(1)|ovary(1)|lung(1)|breast(1)	8						GATACAACTTCCCTTCAGTTT	0.279													5	14					0	0	0.001168	0	0
FAM48B2	170067	broad.mit.edu	37	X	24329442	24329442	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:24329442T>A	uc011mjw.1	-	1	1991	c.1991A>T	c.(1990-1992)CAG>CTG	p.Q664L		NM_001136233	NP_001129705	P0C7V6	F48B2_HUMAN	family with sequence similarity 48, member B2	664	Gln-rich.										0						GGACTGCTGCTGCGGGCCGGT	0.612													13	66					0	0	0.001368	0	0
ZNF81	347344	broad.mit.edu	37	X	47775073	47775073	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:47775073C>T	uc010nhy.1	+	6	1396	c.1028C>T	c.(1027-1029)TCA>TTA	p.S343L		NM_007137	NP_009068	P51508	ZNF81_HUMAN	zinc finger protein 81	343	C2H2-type 1.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(315;0.0973)				ATCCAGAATTCAGAATTAATT	0.358													4	11					0	0	0.000602	0	0
SSX5	6758	broad.mit.edu	37	X	48053621	48053621	+	Missense_Mutation	SNP	C	T	T	rs139280367		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:48053621C>T	uc004dja.1	-	4	277	c.224G>A	c.(223-225)CGG>CAG	p.R75Q	SSX5_uc004diz.1_Missense_Mutation_p.R116Q	NM_175723	NP_783729	O60225	SSX5_HUMAN	synovial sarcoma, X breakpoint 5 isoform b	75	KRAB-related.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding				0						GTCTGCGACCCGTTTATTACG	0.433													36	75					0	0	0.003214	0	0
Unknown	0	broad.mit.edu	37	X	48163767	48163767	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:48163767C>T	uc010nib.1	-	3	166	c.79G>A	c.(79-81)GAT>AAT	p.D27N		NM_174962	NP_777622			synovial sarcoma, X breakpoint 9																		TTGGCAATATCATCGAAGGCC	0.428													13	35					0	0	0.001855	0	0
AKAP4	8852	broad.mit.edu	37	X	49958661	49958661	+	Missense_Mutation	SNP	C	T	T	rs147442985		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:49958661C>T	uc004dow.1	-	5	827	c.703G>A	c.(703-705)GAA>AAA	p.E235K	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Missense_Mutation_p.E57K|AKAP4_uc004dou.1_Missense_Mutation_p.E226K	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	235					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding	p.E235K(1)		kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					TCCTTGATTTCCTTATGGGCC	0.458													17	36					0	0	0.006122	0	0
Unknown	0	broad.mit.edu	37	X	51150031	51150031	+	Missense_Mutation	SNP	T	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:51150031T>C	uc004dpj.2	+	1	265	c.163T>C	c.(163-165)TCG>CCG	p.S55P		NM_203407	NP_981952			hypothetical protein LOC340602																		AGCATCTCCCTCGGGCGGCGC	0.652													5	20					0	0	0.001168	0	0
GSPT2	23708	broad.mit.edu	37	X	51487452	51487452	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:51487452G>A	uc004dpl.2	+	1	956	c.730G>A	c.(730-732)GAA>AAA	p.E244K		NM_018094	NP_060564	Q8IYD1	ERF3B_HUMAN	peptide chain release factor 3	244					cell cycle|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|translational termination	cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)	1	Ovarian(276;0.236)					AGAAGCTAAGGAAAAAAACAG	0.428													6	22					0	0	0.001984	0	0
PHF8	23133	broad.mit.edu	37	X	54020145	54020145	+	Silent	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:54020145C>T	uc004dsu.2	-	13	1696	c.1623G>A	c.(1621-1623)GAG>GAA	p.E541E	PHF8_uc004dst.2_Silent_p.E505E|PHF8_uc004dsv.2_Silent_p.E371E|PHF8_uc004dsw.2_Intron|PHF8_uc004dsx.2_Silent_p.E269E|PHF8_uc004dsy.2_Silent_p.E505E	NM_015107	NP_055922	Q9UPP1	PHF8_HUMAN	PHD finger protein 8	541					brain development|G1/S transition of mitotic cell cycle|negative regulation of chromatin silencing at rDNA|positive regulation of transcription from RNA polymerase I promoter|transcription, DNA-dependent	nucleolus	chromatin binding|histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(3)	3						TGCCCTTTCGCTCTGCCTTCT	0.517													10	49					0	0	0.006214	0	0
SPIN2A	54466	broad.mit.edu	37	X	57162290	57162290	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:57162290G>A	uc004dvb.2	-	2	1112	c.741C>T	c.(739-741)TTC>TTT	p.F247F		NM_019003	NP_061876	Q99865	SPI2A_HUMAN	spindlin family, member 2	247					cell cycle|gamete generation						0						CATAGATATGGAAATCATCAT	0.363													12	38					0	0	0.004990	0	0
PHKA1	5255	broad.mit.edu	37	X	71887314	71887314	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:71887314C>T	uc004eax.3	-	7	929	c.628G>A	c.(628-630)GAA>AAA	p.E210K	PHKA1_uc004eay.3_Missense_Mutation_p.E210K|PHKA1_uc011mqi.1_Missense_Mutation_p.E210K	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	210					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					TCTAATGCTTCCAGGGCTGCC	0.408													7	21					0	0	0.003080	0	0
MAGEE1	57692	broad.mit.edu	37	X	75649911	75649911	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:75649911C>T	uc004ecm.1	+	1	1795	c.1588C>T	c.(1588-1590)CCT>TCT	p.P530S		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	530	MAGE 1.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CAACCAGTTTCCTGAGATACT	0.463													21	23					0	0	0.001882	0	0
MAGT1	84061	broad.mit.edu	37	X	77112981	77112981	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:77112981G>A	uc004fof.2	-	4	562	c.500C>T	c.(499-501)TCA>TTA	p.S167L	MAGT1_uc004fog.3_RNA	NM_032121	NP_115497	Q9H0U3	MAGT1_HUMAN	magnesium transporter 1	135					protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex				upper_aerodigestive_tract(1)	1						AGTTGGAGCTGAATTCATGTT	0.368													32	59					0	0	0.003271	0	0
PCDH11X	27328	broad.mit.edu	37	X	91090984	91090984	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:91090984C>T	uc004efk.1	+	1	1326	c.481C>T	c.(481-483)CCA>TCA	p.P161S	PCDH11X_uc004efl.1_Missense_Mutation_p.P161S|PCDH11X_uc004efo.1_Missense_Mutation_p.P161S|PCDH11X_uc010nmv.1_Missense_Mutation_p.P161S|PCDH11X_uc004efm.1_Missense_Mutation_p.P161S|PCDH11X_uc004efn.1_Missense_Mutation_p.P161S|PCDH11X_uc004efh.1_Missense_Mutation_p.P161S|PCDH11X_uc004efj.1_Missense_Mutation_p.P161S	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	161	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						ATATACTCTCCCAGCGGCTGT	0.353													8	23					0	0	0.003080	0	0
PCDH11X	27328	broad.mit.edu	37	X	91133373	91133373	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:91133373C>T	uc004efk.1	+	2	2979	c.2134C>T	c.(2134-2136)CGT>TGT	p.R712C	PCDH11X_uc004efl.1_Missense_Mutation_p.R712C|PCDH11X_uc004efo.1_Missense_Mutation_p.R712C|PCDH11X_uc010nmv.1_Missense_Mutation_p.R712C|PCDH11X_uc004efm.1_Missense_Mutation_p.R712C|PCDH11X_uc004efn.1_Missense_Mutation_p.R712C|PCDH11X_uc004efh.1_Missense_Mutation_p.R712C|PCDH11X_uc004efj.1_Missense_Mutation_p.R712C	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	712	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						TGCAGAGGTTCGTTACAGCAT	0.428													11	31					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	X	100143480	100143480	+	RNA	SNP	A	G	G			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:100143480A>G	uc010nnf.2	-	1		c.138T>C			uc004egm.2_RNA					full-length cDNA clone CS0DA010YB10 of Neuroblastoma of Homo sapiens (human).																		CCATCGCTCAAAATGGCTCCT	0.512													2	4					0	0	0.004672	0	0
GLA	2717	broad.mit.edu	37	X	100656651	100656651	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:100656651A>C	uc004ehl.1	-	3	626	c.516T>G	c.(514-516)TGT>TGG	p.C172W	GLA_uc011mrj.1_Missense_Mutation_p.C172W	NM_000169	NP_000160	P06280	AGAL_HUMAN	alpha-galactosidase A precursor	172			C -> R (in FD).|C -> Y (in FD).		glycoside catabolic process|glycosphingolipid catabolic process|glycosylceramide catabolic process|negative regulation of nitric oxide biosynthetic process|negative regulation of nitric-oxide synthase activity|oligosaccharide metabolic process	extracellular region|Golgi apparatus|lysosome	cation binding|protein homodimerization activity|raffinose alpha-galactosidase activity|receptor binding				0					Agalsidase beta(DB00103)	TGTCACAGTAACAACCATCAA	0.438													8	53					0	0	0.008291	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	105011020	105011020	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:105011020C>T	uc004elz.1	+	11	2183	c.1427C>T	c.(1426-1428)CCA>CTA	p.P476L		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	476	Cytoplasmic (Potential).|TIR.				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						GTGCTAACTCCAGACTATATT	0.378													11	18					0	0	0.000978	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221776	118221776	+	Silent	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:118221776G>A	uc004era.3	-	11	3417	c.3417C>T	c.(3415-3417)TTC>TTT	p.F1139F		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1139										ovary(4)|skin(1)	5						CAGCCCGCTCGAAATTTGAGG	0.473													22	37					0	0	0.001523	0	0
CXorf56	63932	broad.mit.edu	37	X	118699269	118699269	+	Missense_Mutation	SNP	C	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:118699269C>A	uc004erk.1	-	1	96	c.50G>T	c.(49-51)CGG>CTG	p.R17L	CXorf56_uc004erj.1_5'UTR|CXorf56_uc011mtu.1_Missense_Mutation_p.R17L	NM_022101	NP_071384	Q9H5V9	CX056_HUMAN	hypothetical protein LOC63932	17							protein binding				0						ATATTCCTCCCGGTCCCGAGT	0.572													12	51					4.3838e-07	7.51509e-07	0.001855	1	0
USP26	83844	broad.mit.edu	37	X	132161510	132161510	+	Missense_Mutation	SNP	G	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:132161510G>A	uc010nrm.1	-	6	1209	c.739C>T	c.(739-741)CCT>TCT	p.P247S	USP26_uc011mvf.1_Missense_Mutation_p.P247S	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	247					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					TCTAGGTAAGGATTTCCAGTG	0.373													5	20					0	0	0.000602	0	0
MAGEC1	9947	broad.mit.edu	37	X	140993591	140993591	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:140993591C>T	uc004fbt.2	+	4	687	c.401C>T	c.(400-402)TCC>TTC	p.S134F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	134							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCTGCGAGTTCCTTCTTCTCC	0.502										HNSCC(15;0.026)			32	51					0	0	0.002096	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995727	140995727	+	Missense_Mutation	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:140995727C>T	uc004fbt.2	+	4	2823	c.2537C>T	c.(2536-2538)TCC>TTC	p.S846F	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	846							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCCAAGAGTTCCCCTGAGAGT	0.527										HNSCC(15;0.026)			30	81					0	0	0.001786	0	0
MIR891A	100126341	broad.mit.edu	37	X	145109374	145109374	+	RNA	SNP	C	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:145109374C>T	hsa-mir-891a|MI0005524	-			c.17C>T																				0						GGCTCAGGTTCGTTGCAAGGA	0.328													4	16					0	0	0.000248	0	0
GPR50	9248	broad.mit.edu	37	X	150348293	150348293	+	Missense_Mutation	SNP	T	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:150348293T>A	uc010ntg.1	+	2	373	c.238T>A	c.(238-240)TAC>AAC	p.Y80N	uc004fes.1_5'Flank|GPR50_uc011myc.1_Missense_Mutation_p.Y80N	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	80	Helical; Name=2; (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GGTGGCCATCTACCCATACCC	0.522													42	242					0	0	0.003610	0	0
GABRE	2564	broad.mit.edu	37	X	151123232	151123232	+	Missense_Mutation	SNP	A	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chrX:151123232A>C	uc004ffi.2	-	9	1516	c.1462T>G	c.(1462-1464)TTC>GTC	p.F488V	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	488	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GTCACTGGGAAAACAACTCTC	0.532													6	28					0	0	0.001168	0	0
CLK2	1196	broad.mit.edu	37	1	155236673	155236674	+	Frame_Shift_Ins	INS	-	C	C			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr1:155236673_155236674insC	uc001fjy.2	-	7	974_975	c.684_685insG	c.(682-687)CAGATGfs	p.Q228fs	RAG1AP1_uc010pey.1_Intron|CLK2_uc001fjw.2_Frame_Shift_Ins_p.Q227fs|CLK2_uc001fjx.2_Translation_Start_Site|CLK2_uc009wqm.2_Frame_Shift_Ins_p.Q228fs	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	228_229	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CAGTCAAACATCTGGACACAGA	0.505								Other_conserved_DNA_damage_response_genes					11	25	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	95228730	95228730	+	RNA	DEL	A	-	-			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr12:95228730delA	uc001tdk.2	+	1		c.557delA								Homo sapiens mRNA for keratin 19, partial cds, isolate:K19-141.																		TGGCAGAAACAGAGGCATGCT	0.572													2	4	---	---	---	---					
CMTM4	146223	broad.mit.edu	37	16	66656033	66656034	+	Frame_Shift_Ins	INS	-	T	T			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr16:66656033_66656034insT	uc002epz.2	-	4	736_737	c.554_555insA	c.(553-555)AATfs	p.N185fs	CMTM4_uc002eqa.2_Frame_Shift_Ins_p.N185fs	NM_178818	NP_848933	Q8IZR5	CKLF4_HUMAN	chemokine-like factor superfamily 4 isoform 1	185					chemotaxis	extracellular space|integral to membrane	cytokine activity			pancreas(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0811)|Epithelial(162;0.214)		GGATGTAGTCATTGGTGCTCTG	0.579													8	11	---	---	---	---					
MIR663B	100302269	broad.mit.edu	37	2	133014651	133014652	+	RNA	INS	-	C	C	rs150907057		TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr2:133014651_133014652insC	hsa-mir-663b|MI0006336	-			c.2_3insC			NCRNA00164_uc002ttj.3_Intron																	0						GGCCCTCGGCACCACCGAGACC	0.678													8	8	---	---	---	---					
PKHD1L1	93035	broad.mit.edu	37	8	110467060	110467061	+	Frame_Shift_Ins	INS	-	A	A			TCGA-GN-A26A-06A-11D-A19A-08	TCGA-GN-A26A-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	22edd867-dcd6-42b5-92bb-025ceb84b106	268a11d4-51a7-491c-9060-7dc559dcdb9e	g.chr8:110467060_110467061insA	uc003yne.2	+	45	6957_6958	c.6853_6854insA	c.(6853-6855)GAGfs	p.E2285fs		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2285	Extracellular (Potential).|G8 1.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GGCTGTGCGGGAGGGAATCCTG	0.515										HNSCC(38;0.096)			4	4	---	---	---	---					
