Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
ATAD3B	83858	broad.mit.edu	37	1	1423270	1423270	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:1423270C>T	uc001afv.2	+	12	1343	c.1242C>T	c.(1240-1242)GAC>GAT	p.D414D	ATAD3B_uc001afx.2_Silent_p.D368D|ATAD3B_uc001afy.2_5'Flank	NM_031921	NP_114127	Q5T9A4	ATD3B_HUMAN	AAA-ATPase  TOB3	414							ATP binding|nucleoside-triphosphatase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.79e-36)|OV - Ovarian serous cystadenocarcinoma(86;3.94e-22)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		ATGAAGCAGACGCCTTCCTTC	0.652000													13	69					0	0	0.016723	0	0	
CHD5	26038	broad.mit.edu	37	1	6169960	6169960	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:6169960G>A	uc001amb.1	-	38	5573	c.5473C>T	c.(5473-5475)CTC>TTC	p.L1825F	CHD5_uc001alz.1_Missense_Mutation_p.L682F|CHD5_uc001ama.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1825					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CGGGCGTTGAGGGCCATGGCG	0.667000													6	65					0	0	0.001168	0	0	
PER3	8863	broad.mit.edu	37	1	7887798	7887798	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:7887798T>G	uc001aoo.2	+	17	2960	c.2785T>G	c.(2785-2787)TTA>GTA	p.L929V	PER3_uc009vmg.1_Missense_Mutation_p.L937V|PER3_uc009vmh.1_Missense_Mutation_p.L930V|PER3_uc001aop.2_Missense_Mutation_p.L937V|PER3_uc010nzw.1_Missense_Mutation_p.L618V	NM_016831	NP_058515	P56645	PER3_HUMAN	period 3	929					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			ovary(1)|pancreas(1)|skin(1)	3	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGTTAAACTTACTTCAGGA	0.488000													13	70					0	0	0.003163	0	0	
PRAMEF2	65122	broad.mit.edu	37	1	12921619	12921619	+	Silent	SNP	C	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:12921619C>A	uc001aum.1	+	4	1497	c.1410C>A	c.(1408-1410)CTC>CTA	p.L470L		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	470											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AACTGGAGCTCCATCTTTGCT	0.522000													6	72					0.000274275	0.000279827	0.004482	1	0	
MYOM3	127294	broad.mit.edu	37	1	24417475	24417475	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:24417475T>C	uc001bin.3	-	12	1407	c.1244A>G	c.(1243-1245)GAG>GGG	p.E415G	MYOM3_uc001bim.3_Missense_Mutation_p.E72G|MYOM3_uc001bio.2_Missense_Mutation_p.E415G|MYOM3_uc001bip.1_Missense_Mutation_p.E72G	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	415	Fibronectin type-III 1.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		TTCCCCAGACTCGCCCTGGCA	0.622000													10	45					0	0	0.008291	0	0	
ARID1A	8289	broad.mit.edu	37	1	27106124	27106124	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:27106124A>C	uc001bmv.1	+	20	6108	c.5735A>C	c.(5734-5736)GAT>GCT	p.D1912A	ARID1A_uc001bmu.1_Missense_Mutation_p.D1695A|ARID1A_uc001bmx.1_Missense_Mutation_p.D758A|ARID1A_uc009vsm.1_Missense_Mutation_p.D240A|ARID1A_uc009vsn.1_Missense_Mutation_p.D154A	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1912					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GCCACTATGGATGACATGTTG	0.537000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								40	55					0	0	0.006999	0	0	
KANK4	163782	broad.mit.edu	37	1	62739395	62739395	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:62739395G>A	uc001dah.3	-	3	1758	c.1381C>T	c.(1381-1383)CAT>TAT	p.H461Y	KANK4_uc001dai.3_Intron|KANK4_uc001dag.3_5'Flank	NM_181712	NP_859063	Q5T7N3	KANK4_HUMAN	ankyrin repeat domain 38	461										ovary(3)|skin(2)|lung(1)	6						CCTTGTTTATGACCATCTGGC	0.557000													52	127					0	0	0.014410	0	0	
SLC35D1	23169	broad.mit.edu	37	1	67486081	67486081	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:67486081G>A	uc001ddk.2	-	10	1231	c.847C>T	c.(847-849)CTT>TTT	p.L283F	SLC35D1_uc010oph.1_Missense_Mutation_p.L204F	NM_015139	NP_055954	Q9NTN3	S35D1_HUMAN	solute carrier family 35 (UDP-glucuronic	283	Helical; (Potential).				chondroitin sulfate biosynthetic process|UDP-glucuronate biosynthetic process|xenobiotic metabolic process	integral to endoplasmic reticulum membrane	UDP-glucuronic acid transmembrane transporter activity|UDP-N-acetylgalactosamine transmembrane transporter activity				0					Lorazepam(DB00186)	GTAGTTGTAAGAGCAGAATTA	0.328000													8	80					0	0	0.003080	0	0	
C1orf173	127254	broad.mit.edu	37	1	75036970	75036970	+	Missense_Mutation	SNP	C	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:75036970C>A	uc001dgg.2	-	14	4643	c.4424G>T	c.(4423-4425)CGA>CTA	p.R1475L		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1475	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TAATCCTAATCGGAATTTTTC	0.562000													11	131					6.40141e-05	6.58431e-05	0.010729	1	0	
CLCA3P	9629	broad.mit.edu	37	1	87101306	87101306	+	RNA	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:87101306T>G	uc010osh.1	+	2		c.201T>G				NR_024604				Synthetic construct DNA, clone: pF1KB7225, Homo sapiens CLCA3 gene for chloride channel, calcium activated, family member 3, without stop codon, in Flexi system.												0						AAGCATCTACTTACCTGTTTC	0.308000													4	54					0	0	0.009096	0	0	
C1orf103	55791	broad.mit.edu	37	1	111494883	111494883	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:111494883T>G	uc001eaa.2	-	2	879	c.623A>C	c.(622-624)AAG>ACG	p.K208T	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	208					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		TGCAAGTATCTTTTGCTGCAC	0.448000													4	49					0	0	0.009096	0	0	
RPRD2	23248	broad.mit.edu	37	1	150429979	150429979	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:150429979G>A	uc009wlr.2	+	8	1287	c.1086G>A	c.(1084-1086)GTG>GTA	p.V362V	RPRD2_uc010pcc.1_Silent_p.V336V|RPRD2_uc001eup.3_Silent_p.V336V	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	362							protein binding			ovary(1)	1						CTGAACCTGTGACAGATAATC	0.448000													12	183					0	0	0.010729	0	0	
IFI16	3428	broad.mit.edu	37	1	159023326	159023326	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:159023326A>C	uc001ftg.2	+	10	2211	c.1921A>C	c.(1921-1923)AAT>CAT	p.N641H	IFI16_uc010pis.1_Missense_Mutation_p.N641H|IFI16_uc001fth.2_Missense_Mutation_p.N184H|IFI16_uc010pit.1_Missense_Mutation_p.N240H	NM_005531	NP_005522	Q16666	IF16_HUMAN	interferon, gamma-inducible protein 16	697	HIN-200 2.				cell proliferation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|monocyte differentiation|negative regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	cytoplasm|nuclear speck|nucleolus	double-stranded DNA binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)					TTTGCAGAAAAATGTAAGGGG	0.353000													46	29					0	0	0.011902	0	0	
TNR	7143	broad.mit.edu	37	1	175355276	175355276	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:175355276T>C	uc001gkp.1	-	6	1750	c.1669A>G	c.(1669-1671)AGC>GGC	p.S557G	TNR_uc009wwu.1_Missense_Mutation_p.S557G	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	557	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GAGTATTGGCTCAGGGGAGGC	0.602000													23	62					0	0	0.018920	0	0	
NAV1	89796	broad.mit.edu	37	1	201687644	201687644	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:201687644C>T	uc001gwu.2	+	3	1334	c.987C>T	c.(985-987)GAC>GAT	p.D329D		NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	329					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						AGGCTGGTGACGCGCCCTCTG	0.692000													21	21					0	0	0.010504	0	0	
OR2M5	127059	broad.mit.edu	37	1	248309375	248309375	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:248309375A>T	uc010pze.1	+	1	926	c.926A>T	c.(925-927)AAG>ATG	p.K309M		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GGAAAGGGCAAGTGTGGAGAG	0.428000													36	24					0	0	0.015359	0	0	
C10orf18	54906	broad.mit.edu	37	10	5784428	5784428	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:5784428C>T	uc001iij.2	+	14	3321	c.2696C>T	c.(2695-2697)GCA>GTA	p.A899V	C10orf18_uc001iik.2_Intron	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	899										ovary(1)|central_nervous_system(1)	2						AAAACTTTTGCAAGAGAGTGT	0.378000													6	71					0	0	0.001168	0	0	
GATA3	2625	broad.mit.edu	37	10	8115913	8115913	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:8115913C>T	uc001ika.2	+	6	1816	c.1259C>T	c.(1258-1260)ACG>ATG	p.T420M	GATA3_uc001ijz.2_Missense_Mutation_p.T421M	NM_002051	NP_002042	P23771	GATA3_HUMAN	GATA binding protein 3 isoform 2	420					aortic valve morphogenesis|blood coagulation|canonical Wnt receptor signaling pathway involved in metanephric kidney development|cardiac right ventricle morphogenesis|cell fate determination|cellular response to interferon-alpha|cellular response to interleukin-4|cellular response to tumor necrosis factor|defense response|ear development|lymphocyte migration|male gonad development|mesenchymal to epithelial transition|mesonephros development|negative regulation of cell cycle|negative regulation of cell motility|negative regulation of cell proliferation involved in mesonephros development|negative regulation of endothelial cell apoptosis|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway involved in ureteric bud formation|negative regulation of glial cell-derived neurotrophic factor receptor signaling pathway involved in ureteric bud formation|negative regulation of inflammatory response|negative regulation of mammary gland epithelial cell proliferation|nephric duct formation|norepinephrine biosynthetic process|pharyngeal system development|phosphatidylinositol 3-kinase cascade|positive regulation of endothelial cell migration|positive regulation of interleukin-13 secretion|positive regulation of interleukin-4 production|positive regulation of interleukin-5 secretion|positive regulation of protein kinase B signaling cascade|positive regulation of T cell differentiation|positive regulation of thyroid hormone generation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of ureteric bud formation|regulation of cellular response to X-ray|regulation of cytokine biosynthetic process|regulation of nephron tubule epithelial cell differentiation|response to estrogen stimulus|response to virus|sympathetic nervous system development|T cell receptor signaling pathway|TOR signaling cascade|ureteric bud formation|uterus development|ventricular septum development	nuclear chromatin|nucleolus|nucleoplasm	core promoter proximal region sequence-specific DNA binding|core promoter sequence-specific DNA binding|E-box binding|HMG box domain binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription coactivator activity|transcription factor binding|zinc ion binding			breast(17)|ovary(3)|central_nervous_system(2)	22						ACCACGCCCACGCCGATGCAC	0.637000			F|N|S		breast		HDR syndrome (HYPOPARATHYROIDISM|SENSORINEURAL DEAFNESS|AND RENAL DISEASE)						14	90					0	0	0.008871	0	0	
KIAA1217	56243	broad.mit.edu	37	10	24784102	24784102	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:24784102A>G	uc001iru.3	+	8	2214	c.1811A>G	c.(1810-1812)AAC>AGC	p.N604S	KIAA1217_uc001irs.2_Missense_Mutation_p.N524S|KIAA1217_uc001irt.3_Missense_Mutation_p.N569S|KIAA1217_uc010qcy.1_Missense_Mutation_p.N569S|KIAA1217_uc010qcz.1_Missense_Mutation_p.N569S|KIAA1217_uc001irv.1_Missense_Mutation_p.N419S|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.N287S|KIAA1217_uc001irz.2_Missense_Mutation_p.N287S|KIAA1217_uc001irx.2_Missense_Mutation_p.N287S|KIAA1217_uc001iry.2_Missense_Mutation_p.N287S	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	604					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ACCACAGCCAACAGGAACCAC	0.428000													28	42					0	0	0.006320	0	0	
MYO3A	53904	broad.mit.edu	37	10	26482150	26482150	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:26482150G>T	uc001isn.2	+	32	4815	c.4455G>T	c.(4453-4455)GAG>GAT	p.E1485D	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1485					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						GTAAAGGAGAGGAGCCAAAAA	0.348000													10	36					1.36491e-13	1.4452e-13	0.016723	1	0	
Unknown	0	broad.mit.edu	37	10	30992492	30992492	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:30992492T>C	uc010qdx.1	+	6	934	c.392T>C	c.(391-393)CTT>CCT	p.L131P						SubName: Full=cDNA FLJ59642, highly similar to Supervillin;																		TTTGGGAGACTTACTGAACAC	0.493000													32	176					0	0	0.015359	0	0	
Unknown	0	broad.mit.edu	37	10	43178893	43178893	+	RNA	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:43178893A>C	uc001jah.1	-	4		c.413T>G								Homo sapiens cDNA FLJ41072 fis, clone 3NB692005439.																		GGACACTGCAACTTTGGCCAT	0.473000													3	4					0	0	0.004672	0	0	
PCDH15	65217	broad.mit.edu	37	10	55912869	55912869	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:55912869G>T	uc001jju.1	-	14	2170	c.1775C>A	c.(1774-1776)GCA>GAA	p.A592E	PCDH15_uc010qhq.1_Missense_Mutation_p.A597E|PCDH15_uc010qhr.1_Missense_Mutation_p.A592E|PCDH15_uc010qhs.1_Missense_Mutation_p.A604E|PCDH15_uc010qht.1_Missense_Mutation_p.A599E|PCDH15_uc010qhu.1_Missense_Mutation_p.A592E|PCDH15_uc001jjv.1_Missense_Mutation_p.A570E|PCDH15_uc010qhv.1_Missense_Mutation_p.A592E|PCDH15_uc010qhw.1_Missense_Mutation_p.A555E|PCDH15_uc010qhx.1_Missense_Mutation_p.A592E|PCDH15_uc010qhy.1_Missense_Mutation_p.A597E|PCDH15_uc010qhz.1_Missense_Mutation_p.A592E|PCDH15_uc010qia.1_Missense_Mutation_p.A570E|PCDH15_uc010qib.1_Missense_Mutation_p.A570E|PCDH15_uc001jjw.2_Missense_Mutation_p.A592E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	592	Cadherin 5.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCTTCGCTCTGCAGGAGGAGC	0.458000										HNSCC(58;0.16)			10	51					2.17888e-05	2.25032e-05	0.006214	1	0	
JMJD1C	221037	broad.mit.edu	37	10	64958329	64958329	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:64958329T>G	uc001jmn.2	-	12	5735	c.5435A>C	c.(5434-5436)AAG>ACG	p.K1812T	JMJD1C_uc001jml.2_Missense_Mutation_p.K1593T|JMJD1C_uc001jmm.2_Missense_Mutation_p.K1524T|JMJD1C_uc010qiq.1_Missense_Mutation_p.K1630T|JMJD1C_uc009xpi.2_Missense_Mutation_p.K1630T|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Intron	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1812					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TTGACAGAACTTATCACCTAT	0.303000													61	66					0	0	0.014410	0	0	
NOC3L	64318	broad.mit.edu	37	10	96104172	96104172	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:96104172T>G	uc001kjq.1	-	13	1659	c.1571A>C	c.(1570-1572)AAG>ACG	p.K524T		NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	524						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				CAGCCCTTACTTGGCAAGACC	0.423000													16	31					0	0	0.004007	0	0	
C10orf12	26148	broad.mit.edu	37	10	98744030	98744030	+	Silent	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:98744030A>G	uc001kmv.2	+	1	2990	c.2883A>G	c.(2881-2883)GAA>GAG	p.E961E		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	961										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		TGGAGCCAGAAGATGGCAGTG	0.478000													66	61					0	0	0.014410	0	0	
ARHGAP19	84986	broad.mit.edu	37	10	99003882	99003882	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:99003882T>G	uc001knb.2	-	8	1057	c.1028A>C	c.(1027-1029)AAG>ACG	p.K343T	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Missense_Mutation_p.K334T|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Missense_Mutation_p.K314T|ARHGAP19_uc009xvk.2_Missense_Mutation_p.K137T	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	343					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		CTGAAAGGACTTAGTATGACA	0.448000													18	54					0	0	0.007413	0	0	
TUBGCP2	10844	broad.mit.edu	37	10	135099058	135099058	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr10:135099058C>T	uc001lmg.1	-	12	2154	c.1797G>A	c.(1795-1797)GCG>GCA	p.A599A	TUBGCP2_uc001lmf.1_Silent_p.A192A|TUBGCP2_uc010qvc.1_Silent_p.A627A|TUBGCP2_uc009ybk.1_Intron|TUBGCP2_uc010qvd.1_Silent_p.A469A|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	599					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		CGTGCGCCATCGCCTTCTCCT	0.587000													4	12					0	0	0.009096	0	0	
OR2D2	120776	broad.mit.edu	37	11	6912920	6912920	+	Missense_Mutation	SNP	G	C	C	rs113111396		TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:6912920G>C	uc010rau.1	-	1	812	c.812C>G	c.(811-813)TCG>TGG	p.S271W		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	271	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		AACAGACACCGATTTTTCCTG	0.438000													32	25					0	0	0.008361	0	0	
CTR9	9646	broad.mit.edu	37	11	10776559	10776559	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:10776559G>A	uc001mja.2	+	3	348	c.199G>A	c.(199-201)GCA>ACA	p.A67T		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	67	TPR 1.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		GTTGGAAGCAGCACGTATAGA	0.348000													5	85					0	0	0.001984	0	0	
MPPED2	744	broad.mit.edu	37	11	30557717	30557717	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:30557717T>C	uc001msr.2	-	2	254	c.134A>G	c.(133-135)GAC>GGC	p.D45G	MPPED2_uc001msq.3_Missense_Mutation_p.D45G|MPPED2_uc009yji.2_5'UTR	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	45					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						TGGGATGGGGTCGACCCTAAA	0.438000													5	18					0	0	0.014758	0	0	
LDLRAD3	143458	broad.mit.edu	37	11	36250770	36250770	+	Silent	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:36250770A>G	uc001mwk.1	+	6	898	c.861A>G	c.(859-861)CAA>CAG	p.Q287Q	LDLRAD3_uc010rey.1_Silent_p.Q238Q|LDLRAD3_uc010rez.1_Silent_p.Q166Q|LDLRAD3_uc010rfa.1_RNA	NM_174902	NP_777562	Q86YD5	LRAD3_HUMAN	low density lipoprotein receptor class A domain	287	Cytoplasmic (Potential).					integral to membrane	receptor activity			central_nervous_system(1)	1	all_lung(20;0.089)|Lung NSC(22;0.175)|all_epithelial(35;0.177)	all_hematologic(20;0.124)				CTCTGAACCAAGCCGACCTGC	0.652000													17	187					0	0	0.010504	0	0	
RAG1	5896	broad.mit.edu	37	11	36595301	36595301	+	Silent	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:36595301T>G	uc001mwu.3	+	2	571	c.447T>G	c.(445-447)ACT>ACG	p.T149T	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	149	Interaction with importin alpha-1.				histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				AGAGAGCTACTTCCTGGCCGG	0.488000									Familial_Hemophagocytic_Lymphohistiocytosis				17	47					0	0	0.004990	0	0	
LOC646813	646813	broad.mit.edu	37	11	50379327	50379327	+	RNA	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:50379327G>A	uc001nhe.2	+	6		c.810G>A			LOC646813_uc001nhf.1_RNA|LOC646813_uc001nhg.1_RNA|LOC646813_uc001nhh.1_RNA|LOC646813_uc010rib.1_RNA	NR_024504				Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit09-11-09-R.												0						ATTGCAACTTGATCTGTGGTG	0.388000													5	27					0	0	0.001168	0	0	
OR4A5	81318	broad.mit.edu	37	11	51412308	51412308	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:51412308A>C	uc001nhi.1	-	1	88	c.88T>G	c.(88-90)TTA>GTA	p.L30V		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				TATGTGAGTAAAAACATGACA	0.418000													12	34					0	0	0.013537	0	0	
OR4S2	219431	broad.mit.edu	37	11	55419250	55419250	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:55419250G>T	uc001nhs.1	+	1	871	c.871G>T	c.(871-873)GAA>TAA	p.E291*		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				GAGAAATGCAGAAGTAAAGAA	0.373000													40	57					2.95478e-19	3.18207e-19	0.008740	1	0	
OR5D16	390144	broad.mit.edu	37	11	55606243	55606243	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:55606243A>G	uc010rio.1	+	1	16	c.16A>G	c.(16-18)AGA>GGA	p.R6G		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				TCTGACAGAGAGAAATACGAC	0.413000													38	46					0	0	0.008740	0	0	
OR8J3	81168	broad.mit.edu	37	11	55905083	55905083	+	Missense_Mutation	SNP	T	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:55905083T>A	uc010riz.1	-	1	112	c.112A>T	c.(112-114)ACC>TCC	p.T38S		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CCTGCCATGGTCAGCACATAG	0.483000													54	61					0	0	0.014410	0	0	
OR5B3	441608	broad.mit.edu	37	11	58170447	58170447	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:58170447A>G	uc010rkf.1	-	1	436	c.436T>C	c.(436-438)TCC>CCC	p.S146P		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CAGAGGTAGGAGCCTATGGCC	0.483000													22	72					0	0	0.010504	0	0	
BAD	572	broad.mit.edu	37	11	64037689	64037689	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:64037689A>G	uc001nzd.2	-	4	581	c.499T>C	c.(499-501)TCC>CCC	p.S167P	BAD_uc001nzc.2_Missense_Mutation_p.S167P|GPR137_uc009ypj.1_5'UTR	NM_032989	NP_116784	Q92934	BAD_HUMAN	BCL2-associated agonist of cell death	167					activation of pro-apoptotic gene products|ADP metabolic process|ATP metabolic process|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to nicotine|glucose homeostasis|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|pore complex assembly|positive regulation of epithelial cell proliferation|positive regulation of glucokinase activity|positive regulation of insulin secretion|positive regulation of mitochondrial membrane potential|positive regulation of type B pancreatic cell development|regulation of mitochondrial membrane permeability|type B pancreatic cell proliferation	cytosol|mitochondrial outer membrane	caspase activator activity|phospholipid binding|protein kinase binding			central_nervous_system(1)	1						GGTCACTGGGAGGGGGCGGAG	0.627000													8	31					0	0	0.003080	0	0	
CCDC88B	283234	broad.mit.edu	37	11	64112239	64112239	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:64112239G>A	uc001nzy.2	+	14	2270	c.2226G>A	c.(2224-2226)GAG>GAA	p.E742E	CCDC88B_uc009ypo.1_Silent_p.E739E|CCDC88B_uc001nzz.1_Silent_p.E391E	NM_032251	NP_115627	A6NC98	CC88B_HUMAN	coiled-coil domain containing 88	742	Potential.				microtubule cytoskeleton organization	cytoplasm	microtubule binding			ovary(3)|skin(1)	4						GAAAGGCTGAGGCCCTTGGAG	0.662000													4	33					0	0	0.009096	0	0	
MED17	9440	broad.mit.edu	37	11	93542936	93542936	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:93542936G>T	uc001pem.3	+	11	1913	c.1638G>T	c.(1636-1638)TGG>TGT	p.W546C		NM_004268	NP_004259	Q9NVC6	MED17_HUMAN	mediator complex subunit 17	546					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex|transcription factor complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTATGGGCTGGCAAGTACTGA	0.488000													42	67					3.09479e-21	3.34715e-21	0.006999	1	0	
CNTN5	53942	broad.mit.edu	37	11	99944940	99944940	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:99944940A>C	uc001pga.2	+	13	1833	c.1494A>C	c.(1492-1494)GAA>GAC	p.E498D	CNTN5_uc009ywv.1_Missense_Mutation_p.E498D|CNTN5_uc001pfz.2_Missense_Mutation_p.E498D|CNTN5_uc001pgb.2_Missense_Mutation_p.E424D	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	498	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AAGACCAAGAAGTTGTCATAG	0.378000													6	11					0	0	0.001168	0	0	
DYNC2H1	79659	broad.mit.edu	37	11	102984412	102984412	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:102984412A>C	uc001pho.2	+	2	486	c.342A>C	c.(340-342)CAA>CAC	p.Q114H	DYNC2H1_uc001phn.1_Missense_Mutation_p.Q114H|DYNC2H1_uc009yxe.1_Missense_Mutation_p.Q114H	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	114	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CAGTACGGCAAGTATTCGCAC	0.318000													6	30					0	0	0.001984	0	0	
OR10S1	219873	broad.mit.edu	37	11	123848218	123848218	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:123848218T>G	uc001pzm.1	-	1	181	c.181A>C	c.(181-183)ACT>CCT	p.T61P		NM_001004474	NP_001004474	Q8NGN2	O10S1_HUMAN	olfactory receptor, family 10, subfamily S,	61	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		GAGCCCACAGTTAGGAGGATG	0.532000													8	34					0	0	0.003080	0	0	
ADAMTS15	170689	broad.mit.edu	37	11	130341245	130341245	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr11:130341245G>T	uc010scd.1	+	7	2045	c.2045G>T	c.(2044-2046)TGC>TTC	p.C682F		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	682	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		AATAAGAGCTGCAAGAAGGTG	0.557000													14	24					2.98522e-18	3.1876e-18	0.003163	1	0	
NDUFA9	4704	broad.mit.edu	37	12	4796211	4796211	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:4796211C>T	uc001qnc.2	+	11	1081	c.1071C>T	c.(1069-1071)CGC>CGT	p.R357R	NDUFA9_uc010ses.1_Silent_p.R138R	NM_005002	NP_004993	Q16795	NDUA9_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	357					mitochondrial electron transport, NADH to ubiquinone|sodium ion transport	mitochondrial matrix|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity|protein binding			ovary(1)	1					NADH(DB00157)	GGCGTCATCGCACTTACCGCT	0.527000													11	53					0	0	0.020292	0	0	
LRP6	4040	broad.mit.edu	37	12	12334066	12334066	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:12334066T>G	uc001rah.3	-	6	1426	c.1284A>C	c.(1282-1284)GAA>GAC	p.E428D	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.E428D	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	428	Extracellular (Potential).|LDL-receptor class B 7.|Beta-propeller 2.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GCCTTGTCACTTCTATTCGAT	0.473000													32	47					0	0	0.009535	0	0	
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	T	T	rs121913530		TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:25398285C>T	uc001rgp.1	-	2	215	c.34G>A	c.(34-36)GGT>AGT	p.G12S	KRAS_uc001rgq.1_Missense_Mutation_p.G12S|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12G(6)|p.G12N(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CCTACGCCACCAGCTCCAACT	0.348000	G12C(UMUC3_URINARY_TRACT)|G12R(CAL62_THYROID)|G12C(CALU1_LUNG)|G12C(NCIH2030_LUNG)|G12C(LU99_LUNG)|G12C(NCIH1792_LUNG)|G12R(KP2_PANCREAS)|G12C(KHM1B_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(NCIH2122_LUNG)|G12C(NCIH358_LUNG)|G12R(PSN1_PANCREAS)|G12C(KYSE410_OESOPHAGUS)|G12S(A549_LUNG)|G12R(HUPT3_PANCREAS)|G12R(TCCPAN2_PANCREAS)|G12C(HCC44_LUNG)|G12S(KMS20_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12C(SW1463_LARGE_INTESTINE)|G12C(NCIH23_LUNG)|G12C(LU65_LUNG)|G12C(NCIH1373_LUNG)|G12C(MIAPACA2_PANCREAS)|G12R(HS274T_BREAST)|G12S(LS123_LARGE_INTESTINE)|G12C(SW1573_LUNG)|G12C(SW837_LARGE_INTESTINE)|G12C(OV56_OVARY)|G12C(IALM_LUNG)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			7	11					0	0	0.003080	0	0	
SYT10	341359	broad.mit.edu	37	12	33559774	33559774	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:33559774C>G	uc001rll.1	-	3	1324	c.1027G>C	c.(1027-1029)GAT>CAT	p.D343H	SYT10_uc009zju.1_Missense_Mutation_p.D153H	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	343	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					CTGGAGAGATCAGAGACTTCA	0.353000													9	63					0	0	0.013537	0	0	
AQP5	362	broad.mit.edu	37	12	50358929	50358929	+	Missense_Mutation	SNP	G	A	A	rs139421403	byFrequency	TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:50358929G>A	uc001rvo.2	+	4	1289	c.767G>A	c.(766-768)CGG>CAG	p.R256Q	AQP6_uc001rvp.1_5'Flank|AQP6_uc001rvq.1_5'Flank	NM_001651	NP_001642	P55064	AQP5_HUMAN	aquaporin 5	256	Cytoplasmic (Potential).				carbon dioxide transport|excretion|odontogenesis|pancreatic juice secretion	apical plasma membrane|integral to plasma membrane	protein binding|water channel activity				0						CGGGAAGAGCGGAAGAAGACC	0.592000													3	29					0	0	0.004672	0	0	
CDK2	1017	broad.mit.edu	37	12	56364997	56364997	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:56364997C>T	uc001sit.3	+	6	995	c.758C>T	c.(757-759)CCT>CTT	p.P253L	CDK2_uc001siu.3_Missense_Mutation_p.P219L|CDK2_uc010spy.1_Missense_Mutation_p.P193L|RAB5B_uc001siv.2_5'Flank|RAB5B_uc001siw.2_5'Flank|RAB5B_uc009zog.2_5'Flank|RAB5B_uc010spz.1_5'Flank	NM_001798	NP_001789	P24941	CDK2_HUMAN	cyclin-dependent kinase 2 isoform 1	253	Protein kinase.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|blood coagulation|cell division|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA replication|G1/S transition of mitotic cell cycle|G2 phase of mitotic cell cycle|G2/M transition of mitotic cell cycle|histone phosphorylation|M/G1 transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation|Ras protein signal transduction|regulation of DNA replication|regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|traversing start control point of mitotic cell cycle	cyclin-dependent protein kinase holoenzyme complex|cytosol	ATP binding|cyclin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2			UCEC - Uterine corpus endometrioid carcinoma (6;0.123)|OV - Ovarian serous cystadenocarcinoma(18;0.235)			AAAGTTGTACCTCCCCTGGAT	0.517000													46	594					0	0	0.013114	0	0	
LRP1	4035	broad.mit.edu	37	12	57578891	57578891	+	Silent	SNP	C	T	T	rs144748998		TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:57578891C>T	uc001snd.2	+	40	6832	c.6366C>T	c.(6364-6366)CGC>CGT	p.R2122R		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2122	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CTATCAAGCGCGGGAGCAAAG	0.592000													9	155					0	0	0.006214	0	0	
XPOT	11260	broad.mit.edu	37	12	64814012	64814012	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:64814012T>G	uc001ssb.2	+	7	1078	c.652T>G	c.(652-654)TTA>GTA	p.L218V	XPOT_uc009zqm.1_Missense_Mutation_p.L128V	NM_007235	NP_009166	O43592	XPOT_HUMAN	tRNA exportin	218	Necessary for interaction with Ran, nuclear localization and nuclear import.				intracellular protein transport|tRNA export from nucleus	cytoplasm|nucleoplasm	protein transporter activity|tRNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(28;0.0404)		TTGGATAGACTTATCCCTTAT	0.318000													20	124					0	0	0.021523	0	0	
NUP107	57122	broad.mit.edu	37	12	69127260	69127260	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:69127260A>C	uc001suf.2	+	24	2245	c.2130A>C	c.(2128-2130)GAA>GAC	p.E710D	NUP107_uc001sug.2_Missense_Mutation_p.E469D|NUP107_uc010stj.1_Missense_Mutation_p.E681D	NM_020401	NP_065134	P57740	NU107_HUMAN	nucleoporin 107kDa	710					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			skin(1)	1	Breast(13;6.25e-06)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)			CTGCAAAAGAAGTATTTGTGA	0.373000													25	366					0	0	0.006320	0	0	
ACSS3	79611	broad.mit.edu	37	12	81472095	81472095	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:81472095T>G	uc001szl.1	+	1	287	c.196T>G	c.(196-198)TTC>GTC	p.F66V	ACSS3_uc001szm.1_Missense_Mutation_p.F66V	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	66						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CAAGACCCACTTCGCAGCCTC	0.662000													8	34					0	0	0.003080	0	0	
TMCC3	57458	broad.mit.edu	37	12	94972170	94972170	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr12:94972170C>T	uc001tdj.2	-	3	1249	c.1131G>A	c.(1129-1131)CAG>CAA	p.Q377Q	TMCC3_uc001tdi.2_Silent_p.Q346Q	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	377	Potential.					integral to membrane				ovary(1)|skin(1)	2						GGAAAGGTACCTGGATGTCCC	0.532000													4	61					0	0	0.014758	0	0	
LOC374491	374491	broad.mit.edu	37	13	25155861	25155861	+	Splice_Site	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr13:25155861G>A	uc001upm.2	+	5		c.473_splice	c.e5+1		LOC374491_uc001upn.2_Splice_Site					Homo sapiens mRNA; cDNA DKFZp434J0717 (from clone DKFZp434J0717).												0						AACTGCAGAGGTATGAAAGAT	0.303000													7	31					0	0	0.003080	0	0	
NBEA	26960	broad.mit.edu	37	13	36125129	36125129	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr13:36125129C>T	uc001uvb.2	+	43	6972	c.6766C>T	c.(6766-6768)CGG>TGG	p.R2256W	NBEA_uc010abi.2_Missense_Mutation_p.R912W|NBEA_uc010tee.1_Missense_Mutation_p.R49W|NBEA_uc010tef.1_Missense_Mutation_p.R49W|NBEA_uc010teg.1_Missense_Mutation_p.R49W	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2256						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TAGCTTGCCTCGGGTTGGAGT	0.358000													6	39					0	0	0.003080	0	0	
SPG20	23111	broad.mit.edu	37	13	36888425	36888425	+	Silent	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr13:36888425G>T	uc001uvn.2	-	7	1692	c.1422C>A	c.(1420-1422)ACC>ACA	p.T474T	SPG20_uc010ten.1_Silent_p.T464T|SPG20_uc001uvm.2_Silent_p.T474T|SPG20_uc001uvo.2_Silent_p.T474T|SPG20_uc001uvq.2_Silent_p.T474T	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	474					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		AAAGTCCCTTGGTGACAGCTG	0.423000													25	90					2.12542e-12	2.24102e-12	0.006320	1	0	
OR4L1	122742	broad.mit.edu	37	14	20529098	20529098	+	Silent	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr14:20529098A>C	uc001vwn.1	+	1	895	c.895A>C	c.(895-897)AGA>CGA	p.R299R		NM_001004717	NP_001004717	Q8NH43	OR4L1_HUMAN	olfactory receptor, family 4, subfamily L,	299	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AGAGGCCATAAGAAAATTACG	0.323000													4	61					0	0	0.009096	0	0	
SALL2	6297	broad.mit.edu	37	14	21991766	21991766	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr14:21991766T>C	uc001wbe.2	-	2	2378	c.2096A>G	c.(2095-2097)AAG>AGG	p.K699R	SALL2_uc010tly.1_Missense_Mutation_p.K697R|SALL2_uc010tlz.1_Missense_Mutation_p.K562R|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.K564R|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	699	C2H2-type 5.						DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		ATTGGTGAACTTCTTCTGGCA	0.602000													29	42					0	0	0.009535	0	0	
Unknown	0	broad.mit.edu	37	14	22337385	22337385	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr14:22337385T>G	uc010tmf.1	+	2	258	c.179T>G	c.(178-180)CTT>CGT	p.L60R	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Missense_Mutation_p.L59R|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		AAGCAAGAACTTGGAAAAGGA	0.428000													8	153					0	0	0.003080	0	0	
HECTD1	25831	broad.mit.edu	37	14	31637631	31637631	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr14:31637631C>T	uc001wrc.1	-	10	1984	c.1495G>A	c.(1495-1497)GAT>AAT	p.D499N	HECTD1_uc001wrd.1_Missense_Mutation_p.D14N	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	499					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		TTGTTTGTATCTTTCTTTTTC	0.328000													20	114					0	0	0.008871	0	0	
FAM179B	23116	broad.mit.edu	37	14	45432035	45432035	+	Silent	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr14:45432035T>C	uc001wvv.2	+	1	620	c.411T>C	c.(409-411)TAT>TAC	p.Y137Y	FAM179B_uc001wvw.2_Silent_p.Y137Y|FAM179B_uc010anc.2_RNA|KLHL28_uc001wvq.2_5'Flank|KLHL28_uc001wvr.2_5'Flank|FAM179B_uc010anb.1_Silent_p.Y137Y|FAM179B_uc001wvu.2_Silent_p.Y137Y	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	137							binding			skin(2)|upper_aerodigestive_tract(1)	3						AAGCTTTGTATCGGGCACTGG	0.637000													23	117					0	0	0.004656	0	0	
PRKCH	5583	broad.mit.edu	37	14	61995851	61995851	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr14:61995851T>G	uc001xfn.2	+	11	1797	c.1492T>G	c.(1492-1494)TTC>GTC	p.F498V	PRKCH_uc010tsa.1_Missense_Mutation_p.F337V|PRKCH_uc010tsb.1_Missense_Mutation_p.F66V	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	498	Protein kinase.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		ACTGGCAGACTTCGGAATGTG	0.527000													7	60					0	0	0.003080	0	0	
MAP3K9	4293	broad.mit.edu	37	14	71209259	71209259	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr14:71209259T>G	uc001xmm.2	-	6	1376	c.1376A>C	c.(1375-1377)AAG>ACG	p.K459T	MAP3K9_uc010ttk.1_Missense_Mutation_p.K196T|MAP3K9_uc001xmk.2_Missense_Mutation_p.K153T|MAP3K9_uc001xml.2_Missense_Mutation_p.K459T	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	459					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		CTCCTGGTTCTTCTGCTGCAG	0.607000													3	29					0	0	0.004672	0	0	
C15orf55	256646	broad.mit.edu	37	15	34648354	34648354	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr15:34648354C>T	uc001zif.2	+	7	2216	c.2061C>T	c.(2059-2061)GCC>GCT	p.A687A	C15orf55_uc010ucc.1_Silent_p.A715A|C15orf55_uc010ucd.1_Silent_p.A705A	NM_175741	NP_786883	Q86Y26	NUT_HUMAN	nuclear protein in testis	687						cytoplasm|nucleus			BRD4_ENST00000263377/C15orf55(24)|BRD3/C15orf55(3)	midline_organs(25)|ovary(2)|lung(2)|skin(1)	30		all_lung(180;2.78e-08)		all cancers(64;4.53e-18)|GBM - Glioblastoma multiforme(113;8.29e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0249)		CTTCAGGAGCCATGTGGGGAG	0.562000			T	BRD3|BRD4	lethal midline carcinoma								19	33					0	0	0.006122	0	0	
DNAJC17	55192	broad.mit.edu	37	15	41066576	41066576	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr15:41066576T>C	uc001zms.1	-	9	670	c.659A>G	c.(658-660)GAG>GGG	p.E220G	DNAJC17_uc010bbz.1_RNA|DNAJC17_uc010bca.1_RNA|DNAJC17_uc010bcb.1_RNA	NM_018163	NP_060633	Q9NVM6	DJC17_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 17	220	RRM.				protein folding		heat shock protein binding|nucleotide binding|RNA binding|unfolded protein binding				0		all_cancers(109;4.16e-14)|all_epithelial(112;9.68e-12)|Lung NSC(122;3.19e-09)|all_lung(180;6.45e-08)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.91e-05)|COAD - Colon adenocarcinoma(120;0.153)|BRCA - Breast invasive adenocarcinoma(123;0.166)		GGTTGCAAACTCCACCACAGC	0.577000													37	148					0	0	0.007835	0	0	
UBR1	197131	broad.mit.edu	37	15	43308000	43308000	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr15:43308000T>G	uc001zqq.2	-	29	3161	c.3095A>C	c.(3094-3096)AAG>ACG	p.K1032T	UBR1_uc010udk.1_Missense_Mutation_p.K1032T	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	1032					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		AGCCATGATCTTCTGGCGATG	0.363000													6	113					0	0	0.001984	0	0	
SLC24A5	283652	broad.mit.edu	37	15	48434341	48434341	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr15:48434341A>C	uc001zwe.2	+	9	1369	c.1296A>C	c.(1294-1296)GAA>GAC	p.E432D	SLC24A5_uc010bel.2_Missense_Mutation_p.E372D|MYEF2_uc001zwg.3_3'UTR|MYEF2_uc001zwh.3_3'UTR|MYEF2_uc001zwi.3_3'UTR|MYEF2_uc001zwj.3_3'UTR|SLC24A5_uc001zwk.2_Missense_Mutation_p.E63D	NM_205850	NP_995322	Q71RS6	NCKX5_HUMAN	solute carrier family 24, member 5 precursor	432	Cytoplasmic (Potential).				response to stimulus	integral to membrane|melanosome|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity				0		all_lung(180;0.00217)		all cancers(107;3.29e-10)|GBM - Glioblastoma multiforme(94;7.32e-07)		CTCCTGCAGAAGTAAACAGCA	0.358000													71	63					0	0	0.014410	0	0	
MYEF2	50804	broad.mit.edu	37	15	48435202	48435202	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr15:48435202A>C	uc001zwi.3	-	17	1830	c.1706T>G	c.(1705-1707)TTT>TGT	p.F569C	MYEF2_uc001zwg.3_Missense_Mutation_p.F107C|MYEF2_uc001zwh.3_Missense_Mutation_p.F157C|MYEF2_uc001zwj.3_Missense_Mutation_p.F545C	NM_016132	NP_057216	Q9P2K5	MYEF2_HUMAN	myelin expression factor 2	569	RRM 3.				transcription, DNA-dependent	Golgi apparatus|nucleus	DNA binding|nucleotide binding|RNA binding			lung(2)|ovary(1)	3		all_lung(180;0.00217)		all cancers(107;3.73e-10)|GBM - Glioblastoma multiforme(94;7.81e-07)		TGGGGAGTCAAATCTGACTGT	0.358000													17	56					0	0	0.004990	0	0	
MYO9A	4649	broad.mit.edu	37	15	72244202	72244202	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr15:72244202T>G	uc002atl.3	-	15	2691	c.2218A>C	c.(2218-2220)AGT>CGT	p.S740R	MYO9A_uc010biq.2_Missense_Mutation_p.S335R|MYO9A_uc002atn.1_Missense_Mutation_p.S721R	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	740					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CTATCCATACTTTTCAAAATT	0.348000													24	107					0	0	0.004656	0	0	
PKD1	5310	broad.mit.edu	37	16	2140438	2140438	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:2140438C>T	uc002cos.1	-	45	12501	c.12292G>A	c.(12292-12294)GCC>ACC	p.A4098T	PKD1_uc002cot.1_Missense_Mutation_p.A4097T|MIR1225_hsa-mir-1225|MI0006311_5'Flank	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	4098	Helical; (Potential).				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						AGCCGTAGGGCGCCCCACAGC	0.682000													5	21					0	0	0.014758	0	0	
PDILT	204474	broad.mit.edu	37	16	20371934	20371934	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:20371934A>G	uc002dhc.1	-	11	1685	c.1462T>C	c.(1462-1464)TTC>CTC	p.F488L		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	488					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						CTTTCCAGGAAGTCAGAGAAG	0.478000													45	119					0	0	0.011902	0	0	
ACSM2B	348158	broad.mit.edu	37	16	20566689	20566689	+	Silent	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:20566689T>C	uc002dhj.3	-	5	708	c.498A>G	c.(496-498)GAA>GAG	p.E166E	ACSM2B_uc002dhk.3_Silent_p.E166E|ACSM2B_uc010bwf.1_Silent_p.E166E	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	166					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						CTGTGTCCACTTCTTGGATGA	0.448000													50	168					0	0	0.014410	0	0	
ACSM1	116285	broad.mit.edu	37	16	20702409	20702409	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:20702409T>G	uc002dhm.1	-	1	170	c.102A>C	c.(100-102)GAA>GAC	p.E34D	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Missense_Mutation_p.E34D	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	34					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						GGGCTCCAAATTCTGATAAAG	0.498000													55	125					0	0	0.014410	0	0	
ACSM3	6296	broad.mit.edu	37	16	20808246	20808246	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:20808246G>A	uc002dhr.2	+	14	1900	c.1713G>A	c.(1711-1713)GGG>GGA	p.G571G	ERI2_uc002dht.3_3'UTR|ACSM3_uc010vba.1_Silent_p.G600G|ERI2_uc002dhs.2_Intron|ERI2_uc010vbb.1_3'UTR|ERI2_uc010bwh.2_3'UTR|ERI2_uc010vbc.1_3'UTR|ERI2_uc002dhu.1_3'UTR	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	571					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						CTATCAGTGGGAAGACAAAAA	0.318000													15	56					0	0	0.004007	0	0	
HEATR3	55027	broad.mit.edu	37	16	50106621	50106621	+	Silent	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:50106621A>G	uc002efw.2	+	5	780	c.618A>G	c.(616-618)TCA>TCG	p.S206S	HEATR3_uc002efx.2_Silent_p.S120S	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	206							binding			ovary(1)|skin(1)	2						TGGCTATTTCAGTAGGTAAGT	0.358000													6	36					0	0	0.001168	0	0	
CHD9	80205	broad.mit.edu	37	16	53243432	53243432	+	Silent	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:53243432T>C	uc002ehb.2	+	2	1655	c.1491T>C	c.(1489-1491)TAT>TAC	p.Y497Y	CHD9_uc002egy.2_Silent_p.Y497Y|CHD9_uc002egz.1_Silent_p.Y497Y|CHD9_uc002eha.1_Silent_p.Y497Y|CHD9_uc002ehc.2_Silent_p.Y497Y|CHD9_uc002ehd.2_Silent_p.Y23Y	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	497					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				CTGGGACATATACTAAGTTGC	0.363000													7	18					0	0	0.001984	0	0	
PLA2G15	23659	broad.mit.edu	37	16	68289889	68289889	+	Silent	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:68289889T>G	uc002evr.2	+	5	806	c.723T>G	c.(721-723)GCT>GCG	p.A241A	PLA2G15_uc010vld.1_Missense_Mutation_p.F200V|PLA2G15_uc010vle.1_Silent_p.A147A|PLA2G15_uc010vlf.1_Intron|PLA2G15_uc002evs.2_Silent_p.A62A	NM_012320	NP_036452	Q8NCC3	PAG15_HUMAN	lysophospholipase 3 (lysosomal phospholipase A2)	241					fatty acid catabolic process	extracellular region|lysosome	lysophospholipase activity|phosphatidylcholine-sterol O-acyltransferase activity|phospholipid binding			ovary(1)	1						GCGTCCTGGCTTCAGGTAAGA	0.652000													5	5					0	0	0.014758	0	0	
HYDIN	54768	broad.mit.edu	37	16	70917971	70917971	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr16:70917971G>A	uc002ezr.2	-	59	9956	c.9828C>T	c.(9826-9828)TCC>TCT	p.S3276S		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	3277										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GCTGTCCTCCGGAAGGAATGG	0.587000													4	9					0	0	0.009096	0	0	
TRPV3	162514	broad.mit.edu	37	17	3447882	3447882	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:3447882T>C	uc002fvt.1	-	4	624	c.302A>G	c.(301-303)AAC>AGC	p.N101S	TRPV3_uc010vrh.1_Missense_Mutation_p.N85S|TRPV3_uc010vri.1_Intron|TRPV3_uc010vrj.1_Missense_Mutation_p.N85S|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.N85S|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.N101S|TRPV3_uc002fvu.2_Missense_Mutation_p.N101S	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	101	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	CCTGGGGCTGTTGGGATTGGA	0.617000													10	12					0	0	0.008291	0	0	
PIK3R6	146850	broad.mit.edu	37	17	8731507	8731507	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:8731507C>T	uc002glq.1	-	12	1554	c.1314G>A	c.(1312-1314)AGG>AGA	p.R438R	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	438					platelet activation	cytosol					0						TCTCCCGTTTCCTAgcaatgg	0.328000													34	15					0	0	0.015359	0	0	
GAS7	8522	broad.mit.edu	37	17	9837496	9837496	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:9837496T>G	uc002gmg.1	-	9	1033	c.872A>C	c.(871-873)AAG>ACG	p.K291T	GAS7_uc010vvc.1_Missense_Mutation_p.K105T|GAS7_uc002gmh.1_Missense_Mutation_p.K151T|GAS7_uc010vvd.1_Missense_Mutation_p.K243T|GAS7_uc002gmi.2_Missense_Mutation_p.K227T|GAS7_uc002gmj.1_Missense_Mutation_p.K231T|GAS7_uc010coh.1_Missense_Mutation_p.K231T	NM_201433	NP_958839	O60861	GAS7_HUMAN	growth arrest-specific 7 isoform c	291					cell cycle arrest	cytoplasm	sequence-specific DNA binding transcription factor activity			lung(1)|pancreas(1)	2						GGCAGAGAACTTGAGGTGAAC	0.428000			T	MLL	AML*								3	29					0	0	0.004672	0	0	
LOC162632	162632	broad.mit.edu	37	17	16703493	16703493	+	RNA	SNP	G	A	A	rs28538200	by1000genomes	TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:16703493G>A	uc010cpj.1	+	19		c.4604G>A			LOC162632_uc010cpk.1_RNA|LOC162632_uc010vwq.1_RNA|LOC162632_uc002gqm.2_RNA					Homo sapiens mRNA for KIAA0565 protein, partial cds.												0						GGGCATATGCGGGGGGTGGGC	0.522000													4	31					0	0	0.009096	0	0	
SUPT6H	6830	broad.mit.edu	37	17	27010097	27010097	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:27010097A>G	uc002hby.2	+	15	1955	c.1865A>G	c.(1864-1866)AAG>AGG	p.K622R	SUPT6H_uc010crt.2_Missense_Mutation_p.K622R	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	622					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					ACCCCCACCAAGAAAGGTAGA	0.517000													3	30					0	0	0.004672	0	0	
SUPT6H	6830	broad.mit.edu	37	17	27014227	27014227	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:27014227A>G	uc002hby.2	+	22	2912	c.2822A>G	c.(2821-2823)AAG>AGG	p.K941R	SUPT6H_uc010crt.2_Missense_Mutation_p.K941R|SUPT6H_uc002hbz.1_5'Flank	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	941					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					CTGTGTCTCAAGTTTCACCCC	0.562000													52	126					0	0	0.014410	0	0	
PHF12	57649	broad.mit.edu	37	17	27240011	27240011	+	Silent	SNP	C	T	T	rs147697011	byFrequency	TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:27240011C>T	uc002hdg.1	-	9	2108	c.1578G>A	c.(1576-1578)GCG>GCA	p.A526A	PHF12_uc010wbb.1_Silent_p.A508A|PHF12_uc002hdi.1_Silent_p.A522A|PHF12_uc002hdj.1_Silent_p.A526A|PHF12_uc010crw.1_Silent_p.A229A|PHF12_uc002hdh.1_Silent_p.A309A	NM_001033561	NP_001028733	Q96QT6	PHF12_HUMAN	PHD finger protein 12 isoform 1	526	Interaction with SIN3A.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	protein binding|zinc ion binding			ovary(1)	1	all_cancers(5;1.95e-14)|all_epithelial(6;5e-18)|Lung NSC(42;0.01)		Epithelial(11;1.64e-05)|all cancers(11;7.47e-05)|BRCA - Breast invasive adenocarcinoma(11;9.79e-05)			TGGATTTTTCCGCACAAGAAC	0.562000													22	108					0	0	0.012319	0	0	
SSH2	85464	broad.mit.edu	37	17	27963194	27963194	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:27963194T>G	uc002heo.1	-	14	1973	c.1973A>C	c.(1972-1974)AAG>ACG	p.K658T	SSH2_uc010wbh.1_Missense_Mutation_p.K685T	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	658					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						CTCCACAAACTTCTCTAGGGC	0.498000													63	54					0	0	0.014410	0	0	
KIF2B	84643	broad.mit.edu	37	17	51900831	51900831	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:51900831A>T	uc002iua.2	+	1	593	c.437A>T	c.(436-438)AAG>ATG	p.K146M	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	146					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AAGCAGAAAAAGTCTCCCTGC	0.562000													7	77					0	0	0.001984	0	0	
CSH1	1442	broad.mit.edu	37	17	61972437	61972437	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:61972437T>C	uc002jcs.1	-	5	715	c.599A>G	c.(598-600)GAG>GGG	p.E200G	CSH2_uc002jck.2_Intron|CSH1_uc002jcp.1_3'UTR|CSH1_uc002jcq.1_Missense_Mutation_p.E161G|CSH1_uc002jcr.1_3'UTR|CSH1_uc002jct.1_Missense_Mutation_p.E166G|CSH1_uc002jcu.1_3'UTR|CSH1_uc002jcv.1_Missense_Mutation_p.E105G|CSH1_uc002jcw.2_3'UTR	NM_001317	NP_001308	P01243	CSH_HUMAN	chorionic somatomammotropin hormone 1 isoform 1	200		Zinc.			female pregnancy|signal transduction	extracellular region	hormone activity|metal ion binding			skin(1)	1						CAGGAATGTCTCGACCTTGTC	0.577000									Russell-Silver_syndrome				17	103					0	0	0.007413	0	0	
HELZ	9931	broad.mit.edu	37	17	65157118	65157118	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:65157118A>G	uc010wqk.1	-	16	2157	c.1970T>C	c.(1969-1971)CTT>CCT	p.L657P	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Missense_Mutation_p.L657P	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					CTGGATTGCAAGTGGAGTGGT	0.448000													5	43					0	0	0.003080	0	0	
RNF213	57674	broad.mit.edu	37	17	78357495	78357495	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr17:78357495C>T	uc002jyh.1	+	34	8531	c.8308C>T	c.(8308-8310)CCC>TCC	p.P2770S	uc002jyi.1_Intron|RNF213_uc010dhx.1_5'Flank	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			TAAAACCCTTCCCACCATGAA	0.433000													11	74					0	0	0.013537	0	0	
CXADRP3	440224	broad.mit.edu	37	18	14479234	14479234	+	RNA	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr18:14479234G>A	uc010xai.1	-	3		c.330C>T				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						CCGCGACTCCGCACAGGAGCA	0.592000													10	13					0	0	0.008291	0	0	
LAMA3	3909	broad.mit.edu	37	18	21464785	21464785	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr18:21464785C>T	uc002kuq.2	+	41	5357	c.5271C>T	c.(5269-5271)TGC>TGT	p.C1757C	LAMA3_uc002kur.2_Silent_p.C1757C|LAMA3_uc002kus.3_Silent_p.C148C|LAMA3_uc002kut.3_Silent_p.C148C	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1757	Laminin EGF-like 14.|Domain III A.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTGCTCCTGCAAAGCTGGGT	0.587000													16	117					0	0	0.004007	0	0	
NWD1	284434	broad.mit.edu	37	19	16860249	16860249	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:16860249G>A	uc002neu.3	+	6	1218	c.796G>A	c.(796-798)GGT>AGT	p.G266S	NWD1_uc002net.3_Missense_Mutation_p.G131S|NWD1_uc002nev.3_Missense_Mutation_p.G60S			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	266							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAAGGAGCTGGGTGAGCAGTT	0.617000													15	33					0	0	0.020292	0	0	
ZNF569	148266	broad.mit.edu	37	19	37905139	37905139	+	Silent	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:37905139A>G	uc002ogi.2	-	6	979	c.421T>C	c.(421-423)TTA>CTA	p.L141L	ZNF569_uc002ogh.2_5'UTR|ZNF569_uc002ogj.2_Silent_p.L165L	NM_152484	NP_689697	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	141					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|skin(1)	3			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTTCCAAATAAGTCATACTCA	0.318000													17	38					0	0	0.004990	0	0	
SPTBN4	57731	broad.mit.edu	37	19	41077980	41077980	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:41077980G>T	uc002ony.2	+	34	7461	c.7375G>T	c.(7375-7377)GAC>TAC	p.D2459Y	SPTBN4_uc002onz.2_Missense_Mutation_p.D2459Y|SPTBN4_uc010egx.2_Missense_Mutation_p.D1202Y	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2459	PH.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CTTCTACAAGGACTCCAAGGG	0.602000													72	144					3.39796e-24	3.70686e-24	0.014410	1	0	
PSG6	5675	broad.mit.edu	37	19	43411761	43411761	+	Missense_Mutation	SNP	T	C	C	rs144117726	byFrequency	TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:43411761T>C	uc002ovj.1	-	4	1004	c.952A>G	c.(952-954)ATC>GTC	p.I318V	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.I325V|PSG6_uc002ovi.2_Missense_Mutation_p.I319V|PSG6_uc010xwk.1_Missense_Mutation_p.I158V|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_Missense_Mutation_p.I108V|PSG6_uc002ovf.1_Intron|PSG6_uc002ovg.1_Missense_Mutation_p.I318V	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	318	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TTACTGCGGATGCCACCATAT	0.507000													29	121					0	0	0.007291	0	0	
PSG4	5672	broad.mit.edu	37	19	43699390	43699390	+	Silent	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:43699390A>G	uc002ovy.2	-	4	847	c.745T>C	c.(745-747)TTA>CTA	p.L249L	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Silent_p.L156L|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	249	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				CTGGGGTTTAAGTTGTTGATT	0.453000													55	163					0	0	0.014410	0	0	
IRGC	56269	broad.mit.edu	37	19	44223718	44223718	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:44223718C>T	uc002oxh.2	+	2	1155	c.1008C>T	c.(1006-1008)AAC>AAT	p.N336N		NM_019612	NP_062558	Q6NXR0	IIGP5_HUMAN	immunity-related GTPase family, cinema	336						membrane	GTP binding|hydrolase activity, acting on acid anhydrides			ovary(1)|central_nervous_system(1)|skin(1)	3		Prostate(69;0.0435)				CACTGGCCAACGAGGTCTCGC	0.662000													5	23					0	0	0.014758	0	0	
PRKD2	25865	broad.mit.edu	37	19	47197269	47197269	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:47197269T>C	uc002pfh.2	-	11	1781	c.1439A>G	c.(1438-1440)GAG>GGG	p.E480G	PRKD2_uc010ekt.2_5'Flank|PRKD2_uc002pfe.2_5'UTR|PRKD2_uc002pff.2_5'UTR|PRKD2_uc002pfg.2_Missense_Mutation_p.E323G|PRKD2_uc002pfi.2_Missense_Mutation_p.E480G|PRKD2_uc002pfj.2_Missense_Mutation_p.E480G|PRKD2_uc010xye.1_Missense_Mutation_p.E480G|PRKD2_uc002pfk.2_Missense_Mutation_p.E323G	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	480	PH.				cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		GCCAGGCATCTCGCCCACGAA	0.672000													5	43					0	0	0.001168	0	0	
PRKD2	25865	broad.mit.edu	37	19	47207786	47207786	+	Missense_Mutation	SNP	G	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:47207786G>T	uc002pfh.2	-	5	974	c.632C>A	c.(631-633)ACC>AAC	p.T211N	PRKD2_uc002pfg.2_Missense_Mutation_p.T54N|PRKD2_uc002pfi.2_Missense_Mutation_p.T211N|PRKD2_uc002pfj.2_Missense_Mutation_p.T211N|PRKD2_uc010xye.1_Missense_Mutation_p.T211N|PRKD2_uc002pfk.2_Missense_Mutation_p.T54N	NM_001079881	NP_001073350	Q9BZL6	KPCD2_HUMAN	protein kinase D2 isoform A	211					cell death|intracellular signal transduction|positive regulation of transcription from RNA polymerase II promoter|protein autophosphorylation|T cell receptor signaling pathway	cytoplasm|membrane|nucleus	ATP binding|metal ion binding|protein kinase C activity			ovary(2)|central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)	7		Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000189)|all cancers(93;0.000545)|Epithelial(262;0.0219)|GBM - Glioblastoma multiforme(486;0.0353)		GGACTCGGAGGTGCCGAGGCG	0.662000											OREG0025578	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	27					0.000151284	0.000154974	0.016723	1	0	
PPFIA3	8541	broad.mit.edu	37	19	49652922	49652922	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:49652922C>T	uc002pmr.2	+	28	3805	c.3473C>T	c.(3472-3474)GCA>GTA	p.A1158V	PPFIA3_uc010yai.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.A1017V|PPFIA3_uc002pmt.2_Missense_Mutation_p.A297V|PPFIA3_uc002pmu.1_Missense_Mutation_p.A207V	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	1158						cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		CGTTCGGCTGCAGCGGGAGCC	0.657000													7	25					0	0	0.001984	0	0	
ZNF845	91664	broad.mit.edu	37	19	53854397	53854397	+	Missense_Mutation	SNP	G	C	C	rs10415799	by1000genomes	TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:53854397G>C	uc010ydv.1	+	4	586	c.469G>C	c.(469-471)GAA>CAA	p.E157Q	ZNF845_uc010ydw.1_Missense_Mutation_p.E157Q	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	157					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTTTCAGACCGAAGGGAAAAT	0.408000													8	166					0	0	0.004482	0	0	
LILRB1	10859	broad.mit.edu	37	19	55144500	55144500	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:55144500A>T	uc002qgj.2	+	8	1332	c.992A>T	c.(991-993)CAG>CTG	p.Q331L	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Missense_Mutation_p.Q331L|LILRB1_uc002qgk.2_Missense_Mutation_p.Q331L|LILRB1_uc002qgm.2_Missense_Mutation_p.Q331L|LILRB1_uc010erq.2_Missense_Mutation_p.Q331L|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	331	Ig-like C2-type 4.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CTCTCGGTGCAGCCGGGCCCC	0.607000										HNSCC(37;0.09)			5	66					0	0	0.001168	0	0	
TNNI3	7137	broad.mit.edu	37	19	55665449	55665449	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:55665449G>A	uc002qjg.3	-	7	498	c.498C>T	c.(496-498)TCC>TCT	p.S166S	TNNI3_uc010yft.1_Silent_p.S158S	NM_000363	NP_000354	P19429	TNNI3_HUMAN	troponin I, cardiac	166			S -> F (in CMH7).		cardiac muscle contraction|cellular calcium ion homeostasis|muscle filament sliding|negative regulation of ATPase activity|regulation of systemic arterial blood pressure by ischemic conditions|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	cytosol|troponin complex	actin binding|calcium channel inhibitor activity|calcium-dependent protein binding|protein domain specific binding|protein kinase binding|troponin C binding|troponin T binding			lung(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0452)		GCAGGTCCAGGGACTCCTTAG	0.617000													31	61					0	0	0.009535	0	0	
NLRP4	147945	broad.mit.edu	37	19	56370116	56370116	+	Missense_Mutation	SNP	G	A	A	rs140761924		TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:56370116G>A	uc002qmd.3	+	3	1779	c.1357G>A	c.(1357-1359)GTG>ATG	p.V453M	NLRP4_uc002qmf.2_Missense_Mutation_p.V378M|NLRP4_uc010etf.2_Missense_Mutation_p.V284M	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	453	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GTTCCTCCACGTGTGTATCCA	0.537000													33	89					0	0	0.012213	0	0	
NLRP8	126205	broad.mit.edu	37	19	56467184	56467184	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:56467184T>C	uc002qmh.2	+	3	1831	c.1760T>C	c.(1759-1761)CTG>CCG	p.L587P	NLRP8_uc010etg.2_Missense_Mutation_p.L587P	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	587						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		AAGAGGAAACTGCTGAAAGTC	0.502000													16	22					0	0	0.004007	0	0	
NLRP8	126205	broad.mit.edu	37	19	56467229	56467229	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:56467229C>T	uc002qmh.2	+	3	1876	c.1805C>T	c.(1804-1806)CCG>CTG	p.P602L	NLRP8_uc010etg.2_Missense_Mutation_p.P602L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	602						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CCACCTTCTCCGGGCAGTGGG	0.468000													11	37					0	0	0.013537	0	0	
ZNF135	7694	broad.mit.edu	37	19	58578360	58578360	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:58578360A>C	uc010yhq.1	+	5	640	c.544A>C	c.(544-546)AGT>CGT	p.S182R	ZNF135_uc002qre.2_Missense_Mutation_p.S170R|ZNF135_uc002qrd.1_Missense_Mutation_p.S128R|ZNF135_uc002qrf.2_Missense_Mutation_p.S128R|ZNF135_uc002qrg.2_Missense_Mutation_p.S140R|ZNF135_uc010yhr.1_5'UTR	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	182					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GGAAAACATAAGTCTGAACCC	0.527000													4	44					0	0	0.009096	0	0	
ZNF274	10782	broad.mit.edu	37	19	58724210	58724210	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr19:58724210A>G	uc002qrq.1	+	10	2122	c.1663A>G	c.(1663-1665)AGA>GGA	p.R555G	ZNF274_uc002qrr.1_Missense_Mutation_p.R523G|ZNF274_uc002qrs.1_Missense_Mutation_p.R450G|ZNF274_uc010eum.1_Missense_Mutation_p.R314G	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	555	C2H2-type 2.				viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		ACAGCATCAGAGAGTTCATTC	0.502000													19	68					0	0	0.008871	0	0	
MSGN1	343930	broad.mit.edu	37	2	17998186	17998186	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:17998186A>T	uc010yjt.1	+	1	401	c.401A>T	c.(400-402)AAG>ATG	p.K134M		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	134	Basic motif.				cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GAGAGGGAGAAGCTCAGGATG	0.622000													7	40					0	0	0.003080	0	0	
DNMT3A	1788	broad.mit.edu	37	2	25497834	25497834	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:25497834C>T	uc002rgc.2	-	6	872	c.615G>A	c.(613-615)GAG>GAA	p.E205E	DNMT3A_uc002rgd.2_Silent_p.E205E|DNMT3A_uc010eyi.2_RNA	NM_022552	NP_072046	Q9Y6K1	DNM3A_HUMAN	DNA cytosine methyltransferase 3 alpha isoform	205	Interaction with DNMT1 and DNMT3B.				regulation of gene expression by genetic imprinting	cytoplasm|euchromatin|nuclear matrix	DNA (cytosine-5-)-methyltransferase activity|DNA binding|metal ion binding|protein binding			haematopoietic_and_lymphoid_tissue(133)|lung(4)|ovary(3)	140	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTGCCAGCCACTCGTCCCGCT	0.657000			Mis|F|N|S		AML								7	17					0	0	0.003080	0	0	
IMMT	10989	broad.mit.edu	37	2	86406632	86406632	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:86406632G>A	uc002sqz.3	-	3	621	c.233C>T	c.(232-234)ACC>ATC	p.T78I	IMMT_uc002srb.3_Missense_Mutation_p.T78I|IMMT_uc002sra.3_Missense_Mutation_p.T78I|IMMT_uc010ytd.1_Missense_Mutation_p.T78I|IMMT_uc010yte.1_Missense_Mutation_p.T78I|IMMT_uc002srd.2_Missense_Mutation_p.T78I|IMMT_uc002sre.3_Missense_Mutation_p.T78I|IMMT_uc010ytf.1_Missense_Mutation_p.T78I|IMMT_uc010fgs.1_Missense_Mutation_p.T78I	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	78	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						GTAAGGTATGGTTTTCTCTAC	0.408000													7	16					0	0	0.004482	0	0	
Unknown	0	broad.mit.edu	37	2	89459436	89459436	+	RNA	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:89459436G>A	uc010ytr.1	-	29		c.3758C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TACTACCAATGCTCTGACTGG	0.522000													4	39					0	0	0.001168	0	0	
KIF5C	3800	broad.mit.edu	37	2	149803436	149803436	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:149803436A>C	uc010zbu.1	+	8	981	c.613A>C	c.(613-615)AGT>CGT	p.S205R	KIF5C_uc002tws.1_5'Flank	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	205	Kinesin-motor.|Microtubule-binding.				microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		CAGCTCTAGAAGTCACAGTAT	0.343000													15	7					0	0	0.003163	0	0	
LRP2	4036	broad.mit.edu	37	2	170136035	170136035	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:170136035T>G	uc002ues.2	-	12	1625	c.1412A>C	c.(1411-1413)AAC>ACC	p.N471T	LRP2_uc010zdf.1_Missense_Mutation_p.N471T	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	471	LDL-receptor class B 1.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CACAGCCAGGTTCTCTGGGGT	0.358000													41	29					0	0	0.006999	0	0	
OSBPL6	114880	broad.mit.edu	37	2	179197734	179197734	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:179197734C>T	uc002ulx.2	+	8	1001	c.623C>T	c.(622-624)TCA>TTA	p.S208L	OSBPL6_uc002ulw.2_Missense_Mutation_p.S208L|OSBPL6_uc002uly.2_Missense_Mutation_p.S208L|OSBPL6_uc010zfe.1_Missense_Mutation_p.S208L|OSBPL6_uc002ulz.2_Missense_Mutation_p.S208L|OSBPL6_uc002uma.2_Missense_Mutation_p.S187L	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	208					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			GCTGAATCCTCACCAGCTGCT	0.358000													6	47					0	0	0.001984	0	0	
TTN	7273	broad.mit.edu	37	2	179472303	179472303	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:179472303T>G	uc010zfg.1	-	226	45632	c.45408A>C	c.(45406-45408)AAA>AAC	p.K15136N	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K8831N|TTN_uc010zfi.1_Missense_Mutation_p.K8764N|TTN_uc010zfj.1_Missense_Mutation_p.K8639N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16063							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGTCCATACTTTTGTAGGTA	0.443000													11	240					0	0	0.010729	0	0	
NUP35	129401	broad.mit.edu	37	2	184025818	184025818	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:184025818A>C	uc002upf.2	+	9	1043	c.940A>C	c.(940-942)AGT>CGT	p.S314R	NUP35_uc010zfs.1_Missense_Mutation_p.S296R|NUP35_uc010zft.1_Missense_Mutation_p.S196R|NUP35_uc002upg.2_RNA	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa	314					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						AAAAGATGAAAGTCTTGTATC	0.383000													3	24					0	0	0.004672	0	0	
COL3A1	1281	broad.mit.edu	37	2	189860863	189860863	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:189860863A>G	uc002uqj.1	+	23	1738	c.1621A>G	c.(1621-1623)AGT>GGT	p.S541G		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	541	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	CATGCCCGGAAGTCCAGGAGG	0.348000													4	40					0	0	0.009096	0	0	
DNAH7	56171	broad.mit.edu	37	2	196834765	196834765	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:196834765T>G	uc002utj.3	-	17	2213	c.2112A>C	c.(2110-2112)GAA>GAC	p.E704D		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	704	Stem (By similarity).|Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AATAAAATTCTTCTGATTGCT	0.338000													6	44					0	0	0.001984	0	0	
SCG2	7857	broad.mit.edu	37	2	224462479	224462479	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr2:224462479A>C	uc002vnm.2	-	2	1655	c.1522T>G	c.(1522-1524)TTG>GTG	p.L508V		NM_003469	NP_003460	P13521	SCG2_HUMAN	secretogranin II precursor	508					angiogenesis|endothelial cell migration|eosinophil chemotaxis|induction of positive chemotaxis|inflammatory response|MAPKKK cascade|negative regulation of apoptosis|negative regulation of endothelial cell proliferation|positive regulation of endothelial cell proliferation|protein secretion	extracellular space|stored secretory granule	chemoattractant activity|cytokine activity			ovary(1)	1		Renal(207;0.0112)|Lung NSC(271;0.0185)|all_lung(227;0.0271)		Epithelial(121;8.16e-11)|all cancers(144;4.66e-08)|Lung(261;0.00714)|LUSC - Lung squamous cell carcinoma(224;0.008)		ATCCTGGCCAAGTACTCACCT	0.448000													23	47					0	0	0.012319	0	0	
ANGPT4	51378	broad.mit.edu	37	20	853672	853672	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr20:853672C>T	uc002wei.2	-	9	1546	c.1443G>A	c.(1441-1443)TGG>TGA	p.W481*	ANGPT4_uc010zpn.1_3'UTR	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	481	Fibrinogen C-terminal.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TGAAGTAGTGCCAGCGGATGC	0.577000													26	66					0	0	0.005443	0	0	
RSPO4	343637	broad.mit.edu	37	20	948593	948593	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr20:948593T>G	uc002wej.2	-	2	365	c.268A>C	c.(268-270)AAA>CAA	p.K90Q	RSPO4_uc002wek.2_Missense_Mutation_p.K90Q	NM_001029871	NP_001025042	Q2I0M5	RSPO4_HUMAN	R-spondin family, member 4 isoform 1 precursor	90	FU.				Wnt receptor signaling pathway	extracellular region	heparin binding				0						AGCCACGTACTTTTGCACCTG	0.597000													19	130					0	0	0.010504	0	0	
CSRP2BP	57325	broad.mit.edu	37	20	18142527	18142527	+	Missense_Mutation	SNP	G	A	A	rs150894437		TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr20:18142527G>A	uc002wqj.2	+	6	1368	c.746G>A	c.(745-747)CGG>CAG	p.R249Q	CSRP2BP_uc002wqk.2_Missense_Mutation_p.R121Q|CSRP2BP_uc010zru.1_Missense_Mutation_p.R120Q	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	249					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						CGAGCAAGTCGGAATCCTGTG	0.383000													33	152					0	0	0.013726	0	0	
RPN2	6185	broad.mit.edu	37	20	35858392	35858392	+	Missense_Mutation	SNP	A	G	G	rs139589912		TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr20:35858392A>G	uc002xgp.2	+	13	1815	c.1511A>G	c.(1510-1512)AAG>AGG	p.K504R	RPN2_uc002xgq.2_Missense_Mutation_p.K472R	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	504	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				GTGGTCATCAAGTTCCCTGAG	0.443000													7	43					0	0	0.001984	0	0	
PIGT	51604	broad.mit.edu	37	20	44045194	44045194	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr20:44045194G>A	uc002xoh.1	+	2	298	c.225G>A	c.(223-225)CAG>CAA	p.Q75Q	PIGT_uc010ghb.1_Silent_p.Q75Q|PIGT_uc010zwt.1_RNA|PIGT_uc010ghd.1_Intron|PIGT_uc010ghc.1_RNA|PIGT_uc010ghe.1_Silent_p.Q75Q|PIGT_uc010ghf.1_Silent_p.Q75Q|PIGT_uc002xoj.1_Silent_p.Q75Q|PIGT_uc002xok.1_Silent_p.Q75Q|PIGT_uc010zwu.1_5'UTR|PIGT_uc002xoi.1_RNA|PIGT_uc010zwv.1_Intron|PIGT_uc010zww.1_Silent_p.Q75Q|PIGT_uc010zwx.1_5'UTR|PIGT_uc010zwy.1_Intron|PIGT_uc010zwz.1_Intron|PIGT_uc010zxa.1_5'UTR|PIGT_uc002xol.1_5'Flank	NM_015937	NP_057021	Q969N2	PIGT_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	75	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				CCCTGGGGCAGCTGATCTCCA	0.602000													6	23					0	0	0.001168	0	0	
NTSR1	4923	broad.mit.edu	37	20	61391604	61391604	+	Silent	SNP	C	A	A	rs73918683		TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr20:61391604C>A	uc002ydf.2	+	4	1613	c.1242C>A	c.(1240-1242)CGC>CGA	p.R414R		NM_002531	NP_002522	P30989	NTR1_HUMAN	neurotensin receptor 1	414	Cytoplasmic (Potential).					endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	neurotensin receptor activity, G-protein coupled			skin(2)|lung(1)|central_nervous_system(1)	4	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;3.63e-06)			ATGCCACCCGCGAGACGCTGT	0.687000													304	54					4.59229e-136	5.03156e-136	0.014410	1	0	
MYT1	4661	broad.mit.edu	37	20	62839769	62839769	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr20:62839769A>G	uc002yii.2	+	7	1584	c.1220A>G	c.(1219-1221)CAG>CGG	p.Q407R	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_Missense_Mutation_p.Q39R	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	407					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					GAGCAGAGCCAGCTGGGCCTG	0.667000													10	143					0	0	0.006214	0	0	
RNF160	26046	broad.mit.edu	37	21	30316135	30316135	+	Silent	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr21:30316135T>G	uc002ymr.2	-	23	4225	c.4212A>C	c.(4210-4212)CTA>CTC	p.L1404L		NM_015565	NP_056380	O94822	LTN1_HUMAN	zinc finger protein 294	1358							ligase activity|zinc ion binding				0						TGTGACTCAATAGCTGTTCCT	0.373000													32	62					0	0	0.013726	0	0	
ITSN1	6453	broad.mit.edu	37	21	35190767	35190767	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr21:35190767A>G	uc002yta.1	+	23	3192	c.2924A>G	c.(2923-2925)AAG>AGG	p.K975R	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.K970R|ITSN1_uc010gmg.2_Missense_Mutation_p.K933R|ITSN1_uc010gmh.2_Intron|ITSN1_uc002ysw.2_Missense_Mutation_p.K975R|ITSN1_uc010gmi.2_Missense_Mutation_p.K938R|ITSN1_uc010gmj.2_Missense_Mutation_p.K854R|ITSN1_uc002ysy.2_Missense_Mutation_p.K970R|ITSN1_uc002ysx.2_Missense_Mutation_p.K933R|ITSN1_uc002ytb.1_Missense_Mutation_p.K970R|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.K938R|ITSN1_uc010gml.2_Intron|ITSN1_uc002ytj.2_Missense_Mutation_p.K970R|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.K909R|ITSN1_uc002ytg.1_Missense_Mutation_p.K28R	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	975					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CCCATAAGGAAGTCTACAAGG	0.398000													11	142					0	0	0.016723	0	0	
DOPEY2	9980	broad.mit.edu	37	21	37650614	37650614	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr21:37650614T>C	uc002yvg.2	+	30	6009	c.5930T>C	c.(5929-5931)CTC>CCC	p.L1977P	DOPEY2_uc011aeb.1_Missense_Mutation_p.L1926P	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	1977					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						GAGCTGTTTCTCGACCCCGCT	0.527000													25	67					0	0	0.018920	0	0	
GNAZ	2781	broad.mit.edu	37	22	23465312	23465312	+	Missense_Mutation	SNP	C	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr22:23465312C>G	uc002zwu.1	+	3	1299	c.762C>G	c.(760-762)ATC>ATG	p.I254M	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	254						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		TTGACTCCATCTGCAACAACA	0.552000													22	64					0	0	0.014323	0	0	
GNAZ	2781	broad.mit.edu	37	22	23465478	23465478	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr22:23465478G>A	uc002zwu.1	+	3	1465	c.928G>A	c.(928-930)GAC>AAC	p.D310N	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	310						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		GCAGTTTGAAGACCTGAACCG	0.567000													5	60					0	0	0.014758	0	0	
TFIP11	24144	broad.mit.edu	37	22	26895380	26895380	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr22:26895380C>T	uc003acr.2	-	8	1393	c.1019G>A	c.(1018-1020)CGG>CAG	p.R340Q	TFIP11_uc003acs.2_Missense_Mutation_p.R340Q|TFIP11_uc003act.2_Missense_Mutation_p.R340Q	NM_012143	NP_036275	Q9UBB9	TFP11_HUMAN	tuftelin interacting protein 11	340					biomineral tissue development	catalytic step 2 spliceosome|cytoplasm|nuclear speck	DNA binding|sequence-specific DNA binding transcription factor activity				0						CTGTAGCTGCCGGTCATTCTG	0.617000													14	69					0	0	0.004007	0	0	
NF2	4771	broad.mit.edu	37	22	30074212	30074212	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr22:30074212C>T	uc003age.3	+	14	1917	c.1474C>T	c.(1474-1476)CCT>TCT	p.P492S	NF2_uc003afy.3_Missense_Mutation_p.P492S|NF2_uc003afz.3_Missense_Mutation_p.P409S|NF2_uc003agf.3_Missense_Mutation_p.P492S|NF2_uc003agb.3_Missense_Mutation_p.P415S|NF2_uc003agc.3_Missense_Mutation_p.P454S|NF2_uc003agd.3_RNA|NF2_uc003agg.3_Missense_Mutation_p.P492S|NF2_uc003aga.3_Missense_Mutation_p.P450S|NF2_uc003agh.3_Missense_Mutation_p.P451S|NF2_uc003agi.3_Missense_Mutation_p.P409S|NF2_uc003agj.3_Intron|NF2_uc003agk.3_Missense_Mutation_p.P454S|NF2_uc010gvp.2_Missense_Mutation_p.P156S|NF2_uc011akq.1_Missense_Mutation_p.P118S	NM_000268	NP_000259	P35240	MERL_HUMAN	neurofibromin 2 isoform 1	492					actin cytoskeleton organization|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of cell-matrix adhesion|negative regulation of DNA replication|negative regulation of tyrosine phosphorylation of Stat3 protein|negative regulation of tyrosine phosphorylation of Stat5 protein|positive regulation of stress fiber assembly|regulation of hippo signaling cascade|Schwann cell proliferation	cytoskeleton|early endosome|extrinsic to membrane|filopodium membrane|nucleolus|perinuclear region of cytoplasm|ruffle membrane	cytoskeletal protein binding|protein binding	p.P492fs*1(2)|p.P483fs*17(1)|p.?(1)		meninges(372)|soft_tissue(284)|central_nervous_system(20)|kidney(10)|pleura(9)|skin(7)|large_intestine(5)|breast(5)|urinary_tract(3)|thyroid(2)|endometrium(2)|ovary(2)|lung(2)|stomach(2)|bone(2)|pituitary(1)	728						AGCACCGTTGCCTCCTGACAT	0.458000			D|Mis|N|F|S|O		meningioma|acoustic neuroma|renal 	meningioma|acoustic neuroma			Neurofibromatosis_type_2				38	73					0	0	0.005524	0	0	
CELSR1	9620	broad.mit.edu	37	22	46804928	46804928	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr22:46804928C>T	uc003bhw.1	-	9	5191	c.5191G>A	c.(5191-5193)GCC>ACC	p.A1731T	CELSR1_uc011arc.1_Missense_Mutation_p.A44T	NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1731	Extracellular (Potential).|Laminin G-like 2.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CCACTGGTGGCCTCCATCAGA	0.657000													5	17					0	0	0.014758	0	0	
BSN	8927	broad.mit.edu	37	3	49680049	49680049	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr3:49680049A>C	uc003cxe.3	+	3	1096	c.982A>C	c.(982-984)AGT>CGT	p.S328R		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	328					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCCGGCCAAAAGTGCCACCGC	0.672000													13	3					0	0	0.003163	0	0	
KIAA1407	57577	broad.mit.edu	37	3	113753894	113753894	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr3:113753894T>G	uc003eax.2	-	6	843	c.696A>C	c.(694-696)CAA>CAC	p.Q232H	KIAA1407_uc011bin.1_RNA|KIAA1407_uc011bio.1_Missense_Mutation_p.Q210H|KIAA1407_uc011bip.1_Missense_Mutation_p.Q219H	NM_020817	NP_065868	Q8NCU4	K1407_HUMAN	hypothetical protein LOC57577	232	Potential.									ovary(2)	2						TCTTCTCTTCTTGCACCAGAC	0.463000													36	96					0	0	0.015359	0	0	
RHO	6010	broad.mit.edu	37	3	129251538	129251538	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr3:129251538T>G	uc003emt.2	+	4	954	c.859T>G	c.(859-861)TTC>GTC	p.F287V		NM_000539	NP_000530	P08100	OPSD_HUMAN	rhodopsin	287	Helical; Name=7; (Potential).				protein-chromophore linkage|rhodopsin mediated signaling pathway	Golgi apparatus|integral to plasma membrane|photoreceptor inner segment membrane|photoreceptor outer segment membrane	G-protein coupled receptor activity|metal ion binding|photoreceptor activity|protein binding				0		all_neural(597;0.0227)|Myeloproliferative disorder(1037;0.0255)|Prostate(884;0.183)		GBM - Glioblastoma multiforme(114;2.58e-05)|Lung(219;0.0234)	Halothane(DB01159)	CGGTCCCATCTTCATGACCAT	0.557000													10	48					0	0	0.010729	0	0	
EVC2	132884	broad.mit.edu	37	4	5586387	5586387	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:5586387T>C	uc003gij.2	-	17	3074	c.3020A>G	c.(3019-3021)AAG>AGG	p.K1007R	EVC2_uc011bwb.1_Missense_Mutation_p.K447R|EVC2_uc003gik.2_Missense_Mutation_p.K927R	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	1007	Potential.					integral to membrane				large_intestine(3)|ovary(2)	5						GCAGGCCGACTTGGTCAGCAT	0.597000													4	28					0	0	0.009096	0	0	
SLIT2	9353	broad.mit.edu	37	4	20591350	20591350	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:20591350A>G	uc003gpr.1	+	30	3376	c.3172A>G	c.(3172-3174)AAG>GAG	p.K1058E	SLIT2_uc003gps.1_Missense_Mutation_p.K1050E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1058	EGF-like 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CCTAACTCCAAAGGGATTCAA	0.498000													4	13					0	0	0.009096	0	0	
TBC1D1	23216	broad.mit.edu	37	4	38046040	38046040	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:38046040T>G	uc003gtb.2	+	9	1814	c.1471T>G	c.(1471-1473)TTT>GTT	p.F491V	TBC1D1_uc011byd.1_Missense_Mutation_p.F491V|TBC1D1_uc010ifd.2_Missense_Mutation_p.F238V|TBC1D1_uc011byf.1_Missense_Mutation_p.F362V	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	491						nucleus	Rab GTPase activator activity			ovary(1)	1						TGCCACTCGATTTAGGCTAGA	0.383000													25	92					0	0	0.005443	0	0	
RBM47	54502	broad.mit.edu	37	4	40440178	40440178	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:40440178C>T	uc003gvc.2	-	4	1443	c.733G>A	c.(733-735)GTG>ATG	p.V245M	RBM47_uc003gvd.2_Missense_Mutation_p.V245M|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.V207M|RBM47_uc003gvg.1_Missense_Mutation_p.V245M	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	245						nucleus	nucleotide binding|RNA binding			breast(3)	3						AGGATCTTCACGGTCTCCATC	0.622000													45	87					0	0	0.014410	0	0	
ATP10D	57205	broad.mit.edu	37	4	47582421	47582421	+	Silent	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:47582421T>C	uc003gxk.1	+	20	3738	c.3574T>C	c.(3574-3576)TTA>CTA	p.L1192L	ATP10D_uc003gxl.1_Silent_p.L440L	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	1192	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						CTAGGCATACTTACCCCATAC	0.393000													10	170					0	0	0.008291	0	0	
KIT	3815	broad.mit.edu	37	4	55561768	55561768	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:55561768A>G	uc010igr.2	+	2	245	c.158A>G	c.(157-159)GAG>GGG	p.E53G	KIT_uc010igs.2_Missense_Mutation_p.E53G	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	53	Extracellular (Potential).|Ig-like C2-type 1.				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.E53K(2)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GTGGGCGACGAGATTAGGCTG	0.478000		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				17	51					0	0	0.004990	0	0	
STAP1	26228	broad.mit.edu	37	4	68447130	68447130	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:68447130C>T	uc003hde.3	+	5	553	c.471C>T	c.(469-471)TCC>TCT	p.S157S	STAP1_uc003hdf.2_Silent_p.S157S	NM_012108	NP_036240	Q9ULZ2	STAP1_HUMAN	signal transducing adaptor family member 1	157					cellular membrane fusion|intracellular protein transport	cytoplasm					0						AGAGTACGTCCGTGGAAAAAG	0.428000													79	84					0	0	0.014410	0	0	
THAP9	79725	broad.mit.edu	37	4	83838294	83838294	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:83838294T>G	uc003hnt.2	+	5	1048	c.929T>G	c.(928-930)CTT>CGT	p.L310R	THAP9_uc003hns.1_Missense_Mutation_p.L166R|THAP9_uc003hnu.1_RNA|THAP9_uc003hnv.2_Missense_Mutation_p.L27R	NM_024672	NP_078948	Q9H5L6	THAP9_HUMAN	THAP domain containing 9	310							DNA binding|metal ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	5		Hepatocellular(203;0.114)				CTTGGAAAACTTGATGCTGAT	0.403000													11	153					0	0	0.008291	0	0	
TACR3	6870	broad.mit.edu	37	4	104577395	104577395	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:104577395C>T	uc003hxe.1	-	3	987	c.844G>A	c.(844-846)GAT>AAT	p.D282N		NM_001059	NP_001050	P29371	NK3R_HUMAN	tachykinin receptor 3	282	Cytoplasmic (Potential).					integral to plasma membrane	tachykinin receptor activity			ovary(3)|lung(2)|breast(1)|skin(1)	7		Hepatocellular(203;0.217)		UCEC - Uterine corpus endometrioid carcinoma (10;0.22)|OV - Ovarian serous cystadenocarcinoma(123;3.4e-08)		TCACAGGTATCTCCTGGGATT	0.398000													11	113					0	0	0.010729	0	0	
COL25A1	84570	broad.mit.edu	37	4	110223041	110223041	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:110223041G>A	uc003hze.1	-	2	666	c.135C>T	c.(133-135)GCC>GCT	p.A45A	COL25A1_uc003hzg.2_Silent_p.A45A|COL25A1_uc003hzh.1_Silent_p.A45A	NM_198721	NP_942014	Q9BXS0	COPA1_HUMAN	collagen, type XXV, alpha 1 isoform 1	45	Helical; Signal-anchor for type II membrane protein; (Potential).					collagen|extracellular space	beta-amyloid binding|heparin binding			ovary(2)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000173)		AAGACACCACGGCCACCACTG	0.662000													20	76					0	0	0.007413	0	0	
DDX60	55601	broad.mit.edu	37	4	169138150	169138150	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:169138150G>A	uc003irp.2	-	38	5365	c.5073C>T	c.(5071-5073)GAC>GAT	p.D1691D	DDX60_uc003iro.2_3'UTR	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1691							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		CAACGTTGTCGTCTTCATTTT	0.333000													16	52					0	0	0.007413	0	0	
FAT1	2195	broad.mit.edu	37	4	187554958	187554958	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:187554958G>A	uc003izf.2	-	7	4391	c.4203C>T	c.(4201-4203)CAC>CAT	p.H1401H		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1401	Extracellular (Potential).|Cadherin 12.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						CCACATCGAAGTGACTGTCGT	0.423000										HNSCC(5;0.00058)			13	62					0	0	0.013537	0	0	
TRIML2	205860	broad.mit.edu	37	4	189012817	189012817	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr4:189012817T>C	uc003izl.2	-	7	910	c.874A>G	c.(874-876)ACG>GCG	p.T292A	TRIML2_uc003izj.1_Missense_Mutation_p.T120A|TRIML2_uc003izk.1_Missense_Mutation_p.T100A|TRIML2_uc011cle.1_Missense_Mutation_p.T367A	NM_173553	NP_775824	Q8N7C3	TRIMM_HUMAN	tripartite motif family-like 2	292	B30.2/SPRY.						ligase activity			central_nervous_system(2)	2		all_cancers(14;3.11e-44)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|all_hematologic(60;0.0202)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)		OV - Ovarian serous cystadenocarcinoma(60;1.79e-11)|BRCA - Breast invasive adenocarcinoma(30;4.52e-06)|GBM - Glioblastoma multiforme(59;1.62e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.0091)|READ - Rectum adenocarcinoma(43;0.163)		ACCGACCCCGTGAGCAAGACT	0.577000													12	187					0	0	0.016723	0	0	
ZDHHC11	79844	broad.mit.edu	37	5	840653	840653	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:840653G>A	uc011cma.1	-	5	1125	c.741C>T	c.(739-741)GGC>GGT	p.G247G	ZDHHC11_uc003jbj.2_RNA|ZDHHC11_uc010itd.1_RNA|ZDHHC11_uc003jbk.2_Silent_p.G34G	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	247	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			GGTGCACCAAGCCAAGAAAGT	0.607000													32	241					0	0	0.008361	0	0	
IRX4	50805	broad.mit.edu	37	5	1879701	1879701	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:1879701T>G	uc003jcz.2	-	4	772	c.653A>C	c.(652-654)AAG>ACG	p.K218T	IRX4_uc011cmf.1_Missense_Mutation_p.K79T	NM_016358	NP_057442	P78413	IRX4_HUMAN	iroquois homeobox 4	218					heart development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				GBM - Glioblastoma multiforme(108;0.242)		GTAGGGCCGCTTCTCGTCTGC	0.493000													10	56					0	0	0.006214	0	0	
ANKH	56172	broad.mit.edu	37	5	14713673	14713673	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:14713673G>A	uc003jfm.3	-	10	1576	c.1245C>T	c.(1243-1245)CTC>CTT	p.L415L	ANKH_uc003jfl.3_Silent_p.L128L	NM_054027	NP_473368	Q9HCJ1	ANKH_HUMAN	progressive ankylosis protein	415	Helical; (Potential).				locomotory behavior|regulation of bone mineralization|skeletal system development	integral to plasma membrane|outer membrane	inorganic diphosphate transmembrane transporter activity|inorganic phosphate transmembrane transporter activity			upper_aerodigestive_tract(1)	1						GTAGGACCACGAGGCTGGCGA	0.557000													4	50					0	0	0.009096	0	0	
MRPS36	92259	broad.mit.edu	37	5	68513672	68513672	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:68513672A>G	uc003jvq.2	+	1	100	c.16A>G	c.(16-18)ATG>GTG	p.M6V	MRPS36_uc003jvr.2_RNA	NM_033281	NP_150597	P82909	RT36_HUMAN	mitochondrial ribosomal protein S36	6					translation	mitochondrial small ribosomal subunit	structural constituent of ribosome				0		Lung NSC(167;5.51e-05)|Prostate(74;0.00634)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.04e-56)|Epithelial(20;8.79e-53)|all cancers(19;2.01e-48)|Lung(70;0.0176)		GGGCAGCAAGATGGCGTCTGC	0.647000													14	42					0	0	0.004990	0	0	
AQPEP	206338	broad.mit.edu	37	5	115335576	115335576	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:115335576T>G	uc003kro.2	+	7	1656	c.1492T>G	c.(1492-1494)TTT>GTT	p.F498V	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	498	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						ACAGGAACTCTTTGACATATT	0.363000													4	62					0	0	0.014758	0	0	
DMXL1	1657	broad.mit.edu	37	5	118484481	118484481	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:118484481T>G	uc003ksd.2	+	18	3140	c.2959T>G	c.(2959-2961)TTA>GTA	p.L987V	DMXL1_uc010jcl.1_Missense_Mutation_p.L987V	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	987	WD 8.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TGCTCCTTATTTATTGGCAAC	0.348000													10	71					0	0	0.006214	0	0	
CDC25C	995	broad.mit.edu	37	5	137622934	137622934	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:137622934T>G	uc003lcp.1	-	11	1221	c.950A>C	c.(949-951)AAG>ACG	p.K317T	CDC25C_uc003lcq.1_Missense_Mutation_p.K244T|CDC25C_uc003lcr.1_Missense_Mutation_p.K317T|CDC25C_uc011cyp.1_Missense_Mutation_p.K334T|CDC25C_uc003lcs.1_Missense_Mutation_p.K395T	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	317					cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			ACCCTGGAACTTCCCCGACAG	0.473000													9	33					0	0	0.004482	0	0	
PCDHA9	9752	broad.mit.edu	37	5	140228037	140228037	+	Translation_Start_Site	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:140228037T>G	uc003lhu.2	+	1	681	c.-43T>G	c.(-45--41)ATTTG>ATGTG		PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Translation_Start_Site	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor						homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCTTCTAATTTGGAGGCAAT	0.433000													13	104					0	0	0.016723	0	0	
PCDHA10	56139	broad.mit.edu	37	5	140236750	140236750	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:140236750G>A	uc003lhx.2	+	1	1117	c.1117G>A	c.(1117-1119)GTT>ATT	p.V373I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.V373I|PCDHA10_uc011dad.1_Missense_Mutation_p.V373I	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	373	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTAATCAGCGTTTCTGACCA	0.483000													21	83					0	0	0.018920	0	0	
PCDHB5	26167	broad.mit.edu	37	5	140516360	140516360	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:140516360C>T	uc003liq.2	+	1	1561	c.1344C>T	c.(1342-1344)CCC>CCT	p.P448P		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	448	Cadherin 4.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACAACGCCCCCGCCTTCACCC	0.582000													43	143					0	0	0.014410	0	0	
BTNL8	79908	broad.mit.edu	37	5	180374616	180374616	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:180374616A>G	uc003mmp.2	+	4	1012	c.778A>G	c.(778-780)AAA>GAA	p.K260E	BTNL8_uc003mmq.2_Missense_Mutation_p.K260E|BTNL8_uc011dhg.1_Missense_Mutation_p.K135E|BTNL8_uc010jll.2_Missense_Mutation_p.K260E|BTNL8_uc010jlm.2_Missense_Mutation_p.K144E|BTNL8_uc011dhh.1_Missense_Mutation_p.K76E	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	260	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTTCTTCTCCAAATTCCAGTG	0.488000													39	402					0	0	0.008740	0	0	
BTNL8	79908	broad.mit.edu	37	5	180375359	180375359	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:180375359A>C	uc003mmp.2	+	5	1026	c.792A>C	c.(790-792)AAA>AAC	p.K264N	BTNL8_uc003mmq.2_Missense_Mutation_p.N308H|BTNL8_uc011dhg.1_Missense_Mutation_p.K139N|BTNL8_uc010jll.2_Intron|BTNL8_uc010jlm.2_Missense_Mutation_p.K148N|BTNL8_uc011dhh.1_Missense_Mutation_p.K80N	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	264	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTTCAGGGAAAATCCAGGCGG	0.552000													24	196					0	0	0.004656	0	0	
BTNL8	79908	broad.mit.edu	37	5	180377026	180377026	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:180377026A>G	uc003mmp.2	+	8	1219	c.985A>G	c.(985-987)AGT>GGT	p.S329G	BTNL8_uc003mmq.2_3'UTR|BTNL8_uc011dhg.1_Missense_Mutation_p.S204G|BTNL8_uc010jll.2_3'UTR|BTNL8_uc010jlm.2_Missense_Mutation_p.S213G|BTNL8_uc011dhh.1_Missense_Mutation_p.S145G	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	329	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TACAAGGAAGAGTGTGGTGGC	0.522000													6	52					0	0	0.001984	0	0	
BTNL8	79908	broad.mit.edu	37	5	180377398	180377398	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr5:180377398A>C	uc003mmp.2	+	8	1591	c.1357A>C	c.(1357-1359)AAT>CAT	p.N453H	BTNL8_uc003mmq.2_3'UTR|BTNL8_uc011dhg.1_Missense_Mutation_p.N328H|BTNL8_uc010jll.2_3'UTR|BTNL8_uc010jlm.2_Missense_Mutation_p.N337H|BTNL8_uc011dhh.1_Missense_Mutation_p.N269H	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	453	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TAATGAGCAAAATGGAACTCC	0.468000													19	102					0	0	0.007413	0	0	
OR14J1	442191	broad.mit.edu	37	6	29274938	29274938	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:29274938G>A	uc011dln.1	+	1	472	c.472G>A	c.(472-474)GCT>ACT	p.A158T		NM_030946	NP_112208	Q9UGF5	O14J1_HUMAN	olfactory receptor, family 5, subfamily U member	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GCTCATGCATGCTGCCATTAA	0.473000													14	153					0	0	0.003163	0	0	
BTBD9	114781	broad.mit.edu	37	6	38561952	38561952	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:38561952A>G	uc003ooa.3	-	4	913	c.337T>C	c.(337-339)TTT>CTT	p.F113L	BTBD9_uc003ony.3_Missense_Mutation_p.F45L|BTBD9_uc010jwv.2_Missense_Mutation_p.F45L|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Missense_Mutation_p.F113L	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	113					cell adhesion						0						AGGCTCAAAAAGTCCAGCAGC	0.453000													61	197					0	0	0.014410	0	0	
HSP90AB1	3326	broad.mit.edu	37	6	44217547	44217547	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:44217547T>G	uc003oxa.1	+	4	574	c.490T>G	c.(490-492)TCC>GCC	p.S164A	HSP90AB1_uc011dvr.1_Missense_Mutation_p.S154A|HSP90AB1_uc003oxb.1_Missense_Mutation_p.S164A|HSP90AB1_uc011dvs.1_Intron|HSP90AB1_uc003oxc.1_5'Flank	NM_007355	NP_031381	P08238	HS90B_HUMAN	heat shock 90kDa protein 1, beta	164					axon guidance|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of nitric oxide biosynthetic process|protein folding|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to unfolded protein	cytosol|melanosome	ATP binding|nitric-oxide synthase regulator activity|TPR domain binding|unfolded protein binding			lung(3)|breast(1)	4	all_cancers(18;1.7e-05)|all_lung(25;0.00747)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			TGCTGGAGGTTCCTTCACTGT	0.458000													80	227					0	0	0.014410	0	0	
C6orf138	442213	broad.mit.edu	37	6	47847079	47847079	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:47847079T>C	uc011dwm.1	-	3	1535	c.1450A>G	c.(1450-1452)AGT>GGT	p.S484G	C6orf138_uc011dwn.1_Missense_Mutation_p.S248G	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	501						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						TAGGAAACACTTGGCGAATCA	0.463000													11	13					0	0	0.008291	0	0	
PKHD1	5314	broad.mit.edu	37	6	51890809	51890809	+	Missense_Mutation	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:51890809C>T	uc003pah.1	-	32	4075	c.3799G>A	c.(3799-3801)GCT>ACT	p.A1267T	PKHD1_uc003pai.2_Missense_Mutation_p.A1267T	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	1267	Extracellular (Potential).|IPT/TIG 7.				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TCCACGGCAGCTGGAACAGTG	0.592000													11	41					0	0	0.013537	0	0	
KIAA1586	57691	broad.mit.edu	37	6	56918933	56918933	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:56918933A>G	uc003pdj.2	+	4	1806	c.1636A>G	c.(1636-1638)AGA>GGA	p.R546G	KIAA1586_uc011dxm.1_Missense_Mutation_p.R519G	NM_020931	NP_065982	Q9HCI6	K1586_HUMAN	hypothetical protein LOC57691	546							nucleic acid binding				0	Lung NSC(77;0.0969)		LUSC - Lung squamous cell carcinoma(124;0.0785)|Lung(124;0.13)			ATTACAGTCAAGATCAACTAA	0.299000													16	23					0	0	0.003163	0	0	
BAI3	577	broad.mit.edu	37	6	69348663	69348663	+	Silent	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:69348663T>G	uc003pev.3	+	3	544	c.96T>G	c.(94-96)ACT>ACG	p.T32T	BAI3_uc010kak.2_Silent_p.T32T	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	32	CUB.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GGTGTTCAACTTTGGTGAAGG	0.393000													5	69					0	0	0.014758	0	0	
COL12A1	1303	broad.mit.edu	37	6	75862083	75862083	+	Silent	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:75862083T>C	uc003phs.2	-	18	3847	c.3681A>G	c.(3679-3681)GAA>GAG	p.E1227E	COL12A1_uc003pht.2_Silent_p.E63E	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1227	VWFA 3.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TGTCAAAGACTTCCACAATAC	0.443000													7	30					0	0	0.001984	0	0	
ANKRD6	22881	broad.mit.edu	37	6	90326294	90326294	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:90326294T>G	uc003pni.3	+	8	973	c.632T>G	c.(631-633)CTT>CGT	p.L211R	ANKRD6_uc003pne.3_Missense_Mutation_p.L211R|ANKRD6_uc003pnf.3_Missense_Mutation_p.L211R|ANKRD6_uc011dzy.1_Missense_Mutation_p.L211R|ANKRD6_uc010kcd.2_Missense_Mutation_p.L178R|LYRM2_uc010kce.1_Intron|LYRM2_uc003png.2_Intron|ANKRD6_uc003pnh.3_5'UTR	NM_014942	NP_055757	Q9Y2G4	ANKR6_HUMAN	ankyrin repeat domain 6	211	ANK 7.						protein binding			ovary(2)|pancreas(1)	3		all_cancers(76;1.22e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.79e-07)|all_epithelial(107;1.83e-05)|Lung NSC(302;0.239)		BRCA - Breast invasive adenocarcinoma(108;0.0209)		GACACAGCACTTCACGTTGCT	0.488000													20	42					0	0	0.010504	0	0	
RSPH4A	345895	broad.mit.edu	37	6	116948943	116948943	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:116948943A>T	uc003pxe.2	+	3	1218	c.1073A>T	c.(1072-1074)AAG>ATG	p.K358M	RSPH4A_uc010kee.2_Missense_Mutation_p.K358M	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	358					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						TTCTGGGGAAAGATCTTGGGT	0.343000									Kartagener_syndrome				17	69					0	0	0.006122	0	0	
PEX3	8504	broad.mit.edu	37	6	143793448	143793448	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr6:143793448A>G	uc003qjl.2	+	8	992	c.730A>G	c.(730-732)ACT>GCT	p.T244A	PEX3_uc011edx.1_Missense_Mutation_p.T244A	NM_003630	NP_003621	P56589	PEX3_HUMAN	peroxisomal biogenesis factor 3	244	Cytoplasmic (Potential).				protein import into peroxisome membrane|transmembrane transport	integral to peroxisomal membrane	protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;5.73e-06)|GBM - Glioblastoma multiforme(68;0.0117)		AGATGAAGAAACTCCATTAGC	0.328000													8	53					0	0	0.003080	0	0	
HSPB1	3315	broad.mit.edu	37	7	75932122	75932122	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr7:75932122G>A	uc003uew.2	+	1	248	c.93G>A	c.(91-93)CAG>CAA	p.Q31Q	HSPB1_uc010ldj.1_5'Flank	NM_001540	NP_001531	P04792	HSPB1_HUMAN	heat shock protein beta-1	31					anti-apoptosis|cell death|cellular component movement|mRNA metabolic process|positive regulation of interleukin-1 beta production|positive regulation of tumor necrosis factor biosynthetic process|regulation of I-kappaB kinase/NF-kappaB cascade|regulation of translational initiation|response to heat|response to unfolded protein|response to virus	cell surface|cytosol|nucleus|proteasome complex|spindle	identical protein binding|protein kinase C delta binding|protein kinase C inhibitor activity|ubiquitin binding				0						TCTTCGACCAGGCCTTCGGGC	0.731000													3	9					0	0	0.009096	0	0	
ABCB1	5243	broad.mit.edu	37	7	87160630	87160630	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr7:87160630C>A	uc003uiz.1	-	22	3083	c.2665G>T	c.(2665-2667)GAA>TAA	p.E889*	ABCB1_uc011khc.1_Nonsense_Mutation_p.E825*	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	889	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCTTCTAGTTCTTTCTTATCT	0.348000													14	85					7.93312e-07	8.22694e-07	0.020292	1	0	
PIK3CG	5294	broad.mit.edu	37	7	106509364	106509364	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr7:106509364A>G	uc003vdv.3	+	2	1443	c.1358A>G	c.(1357-1359)GAG>GGG	p.E453G	PIK3CG_uc003vdu.2_Missense_Mutation_p.E453G|PIK3CG_uc003vdw.2_Missense_Mutation_p.E453G	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	453					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						CCCAGTTCTGAGTCCAAGGGC	0.537000													13	68					0	0	0.013537	0	0	
ZNF425	155054	broad.mit.edu	37	7	148801027	148801027	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr7:148801027T>G	uc003wfj.2	-	4	2009	c.1936A>C	c.(1936-1938)AGT>CGT	p.S646R		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	646	C2H2-type 16.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TGAGTGAAACTTTTGCCGCAC	0.537000													17	125					0	0	0.006122	0	0	
CNBD1	168975	broad.mit.edu	37	8	88365977	88365977	+	Silent	SNP	A	G	G	rs148357017	by1000genomes	TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr8:88365977A>G	uc003ydy.2	+	10	1314	c.1266A>G	c.(1264-1266)GAA>GAG	p.E422E		NM_173538	NP_775809	Q8NA66	CNBD1_HUMAN	cyclic nucleotide binding domain containing 1	422	cNMP.									ovary(3)	3						CCAAAAAAGAAGTTGAGATGG	0.328000													23	35					0	0	0.018920	0	0	
RUNX1T1	862	broad.mit.edu	37	8	92998514	92998514	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr8:92998514G>A	uc003yfd.2	-	8	1201	c.1117C>T	c.(1117-1119)CGA>TGA	p.R373*	RUNX1T1_uc003yfc.1_Nonsense_Mutation_p.R346*|RUNX1T1_uc003yfe.1_Nonsense_Mutation_p.R336*|RUNX1T1_uc010mao.2_Nonsense_Mutation_p.R346*|RUNX1T1_uc011lgi.1_Nonsense_Mutation_p.R384*|RUNX1T1_uc010man.1_5'UTR|RUNX1T1_uc003yfb.1_Nonsense_Mutation_p.R336*	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	373	Important for oligomerization.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			GTGAGAGATCGCCTTGTTTTT	0.433000													9	140					0	0	0.006214	0	0	
GSDMC	56169	broad.mit.edu	37	8	130760962	130760962	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr8:130760962A>C	uc003ysr.2	-	14	2194	c.1312T>G	c.(1312-1314)TTC>GTC	p.F438V		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	438						mitochondrion				ovary(2)|skin(1)	3						GGGTATCTGAAGTTTGGCTCC	0.527000													11	63					0	0	0.010729	0	0	
FAM135B	51059	broad.mit.edu	37	8	139144979	139144979	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr8:139144979T>C	uc003yuy.2	-	20	4249	c.4078A>G	c.(4078-4080)ACT>GCT	p.T1360A	FAM135B_uc003yux.2_Missense_Mutation_p.T1261A|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1360										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CGGATTAAAGTGCAGTCCTTG	0.542000										HNSCC(54;0.14)			29	299					0	0	0.009535	0	0	
IFNA17	3451	broad.mit.edu	37	9	21227998	21227998	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr9:21227998A>T	uc003zos.1	-	1	224	c.175T>A	c.(175-177)TTT>ATT	p.F59I	IFNA14_uc003zoo.1_Intron	NM_021268	NP_067091	P01571	IFN17_HUMAN	interferon, alpha 17 precursor	59					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				Lung(24;2.13e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		GGAAGTCCAAAGTCATGTCTG	0.512000													9	152					0	0	0.008291	0	0	
GABBR2	9568	broad.mit.edu	37	9	101125010	101125010	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr9:101125010T>G	uc004ays.2	-	13	2036	c.1880A>C	c.(1879-1881)AAG>ACG	p.K627T		NM_005458	NP_005449	O75899	GABR2_HUMAN	G protein-coupled receptor 51 precursor	627	Extracellular (Potential).				negative regulation of adenylate cyclase activity|synaptic transmission	cell junction|integral to plasma membrane|postsynaptic membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(2)|skin(2)	4		Acute lymphoblastic leukemia(62;0.0527)			Baclofen(DB00181)	CATGCTGTACTTCTCCACTGT	0.607000													16	16					0	0	0.004007	0	0	
FKTN	2218	broad.mit.edu	37	9	108397526	108397526	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr9:108397526A>G	uc004bcr.2	+	11	1583	c.1367A>G	c.(1366-1368)GAG>GGG	p.E456G	FKTN_uc011lvx.1_Intron|FKTN_uc004bcs.2_Missense_Mutation_p.E456G|FKTN_uc011lvy.1_3'UTR|FKTN_uc010mtm.2_Missense_Mutation_p.E324G	NM_001079802	NP_001073270	O75072	FKTN_HUMAN	fukutin	456	Lumenal (Potential).				muscle organ development|negative regulation of cell proliferation|negative regulation of JNK cascade|nervous system development|regulation of protein glycosylation	cis-Golgi network|endoplasmic reticulum|extracellular space|Golgi membrane|integral to membrane|nucleus	transferase activity			breast(2)|ovary(1)	3						GAGTGGGATGAGGTTATCCAG	0.393000													34	55					0	0	0.017118	0	0	
TNFSF8	944	broad.mit.edu	37	9	117692483	117692483	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr9:117692483G>A	uc004bji.1	-	1	288	c.101C>T	c.(100-102)ACG>ATG	p.T34M		NM_001244	NP_001235	P32971	TNFL8_HUMAN	tumor necrosis factor (ligand) superfamily,	34	Cytoplasmic (Potential).				cell proliferation|cell-cell signaling|immune response|induction of apoptosis|signal transduction	extracellular space|integral to plasma membrane	cytokine activity|tumor necrosis factor receptor binding			lung(3)|skin(2)|ovary(1)	6						GCTGCGGCTCGTGGTCCCCAG	0.597000													67	59					0	0	0.014410	0	0	
CERCAM	51148	broad.mit.edu	37	9	131196814	131196814	+	Missense_Mutation	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr9:131196814A>G	uc004buz.3	+	11	1855	c.1457A>G	c.(1456-1458)AAG>AGG	p.K486R	CERCAM_uc004buy.1_Missense_Mutation_p.K408R|CERCAM_uc010mxz.2_Missense_Mutation_p.K408R|CERCAM_uc010mya.1_Missense_Mutation_p.K327R	NM_016174	NP_057258	Q5T4B2	GT253_HUMAN	cerebral endothelial cell adhesion molecule 1	486					cellular component movement|leukocyte cell-cell adhesion|lipopolysaccharide biosynthetic process	endoplasmic reticulum lumen|plasma membrane				pancreas(1)	1						GGTGCCCGCAAGCTGCTGGCC	0.687000													4	48					0	0	0.009096	0	0	
KIAA0649	9858	broad.mit.edu	37	9	138377178	138377178	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr9:138377178G>A	uc004cfr.1	+	4	1371	c.822G>A	c.(820-822)GTG>GTA	p.V274V		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	274						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		CTACAAAGGTGGTGCATCGGC	0.542000													82	87					0	0	0.014410	0	0	
GPR143	4935	broad.mit.edu	37	X	9693829	9693829	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:9693829T>G	uc004cst.1	-	9	1232	c.1232A>C	c.(1231-1233)AAA>ACA	p.K411T		NM_000273	NP_000264	P51810	GP143_HUMAN	G protein-coupled receptor 143	391	Cytoplasmic (Potential).				calcium-mediated signaling using intracellular calcium source|eye pigment biosynthetic process|melanosome organization|melanosome transport|phosphatidylinositol-mediated signaling|regulation of calcium-mediated signaling|visual perception	apical plasma membrane|Golgi apparatus|integral to membrane|lysosomal membrane|melanosome membrane|membrane fraction	dopamine binding|L-DOPA receptor activity|protein binding|tyrosine binding			ovary(1)	1		Hepatocellular(5;0.000888)				ACCCTCATTTTTGTTGCAGGA	0.483000													5	28					0	0	0.001168	0	0	
MAGEB18	286514	broad.mit.edu	37	X	26157256	26157256	+	Silent	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:26157256T>C	uc004dbq.1	+	2	341	c.154T>C	c.(154-156)TTG>CTG	p.L52L		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	52							protein binding			central_nervous_system(1)	1						ACCCCAGAATTTGCCTGCTGC	0.542000													6	54					0	0	0.001168	0	0	
CACNA1F	778	broad.mit.edu	37	X	49061780	49061780	+	Silent	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:49061780G>A	uc004dnb.2	-	48	5813	c.5751C>T	c.(5749-5751)TTC>TTT	p.F1917F	CACNA1F_uc010nip.2_Silent_p.F1906F	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1917	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	CCAGGGCCACGAAACGTGGGT	0.602000													3	28					0	0	0.004672	0	0	
NOX1	27035	broad.mit.edu	37	X	100117182	100117182	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:100117182T>C	uc004egj.2	-	7	988	c.782A>G	c.(781-783)AAG>AGG	p.K261R	uc010nnf.2_Intron|NOX1_uc004egl.3_Missense_Mutation_p.K261R|NOX1_uc010nne.2_Missense_Mutation_p.K224R	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	261	Ferric oxidoreductase.|Extracellular (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						CCCTTCAAACTTAGGGCGCCT	0.443000													31	110					0	0	0.007291	0	0	
NXF5	55998	broad.mit.edu	37	X	101095862	101095862	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:101095862C>T	uc011mrk.1	-	9	846	c.486G>A	c.(484-486)TTG>TTA	p.L162L	NXF5_uc004eih.1_RNA|NXF5_uc004eii.1_Intron|NXF5_uc004eij.1_RNA|NXF5_uc004eik.1_RNA|NXF5_uc004eil.1_RNA	NM_032946	NP_116564	Q9H1B4	NXF5_HUMAN	nuclear RNA export factor 5	162	LRR 1.				mRNA export from nucleus|multicellular organismal development	actin cytoskeleton|cytoplasm|nucleus	nucleocytoplasmic transporter activity|nucleotide binding|protein binding|RNA binding			central_nervous_system(1)	1						AGTTCAAAGACAACAGCTTTG	0.463000													9	66					0	0	0.006214	0	0	
ARMCX5	64860	broad.mit.edu	37	X	101857231	101857231	+	Silent	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:101857231T>C	uc004ejg.2	+	6	1043	c.162T>C	c.(160-162)GCT>GCC	p.A54A	ARMCX5_uc004ejh.2_Silent_p.A54A	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	54							binding			ovary(1)	1						AGGCCAAAGCTGGTGATGGAG	0.512000													9	59					0	0	0.004482	0	0	
BHLHB9	80823	broad.mit.edu	37	X	102004547	102004547	+	Silent	SNP	A	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:102004547A>G	uc010nog.2	+	4	1195	c.624A>G	c.(622-624)AAA>AAG	p.K208K	BHLHB9_uc011mrq.1_Silent_p.K208K|BHLHB9_uc011mrr.1_Silent_p.K208K|BHLHB9_uc011mrs.1_Silent_p.K208K|BHLHB9_uc011mrt.1_Silent_p.K208K|BHLHB9_uc004ejo.2_Silent_p.K208K|BHLHB9_uc011mru.1_Silent_p.K208K|BHLHB9_uc011mrv.1_Silent_p.K208K	NM_001142526	NP_001135998	Q6PI77	BHLH9_HUMAN	basic helix-loop-helix domain containing, class	208						cytoplasm|nucleus	binding			ovary(2)	2						TTAATGAAAAAAATAGGCCCA	0.458000													45	185					0	0	0.014410	0	0	
NXF3	56000	broad.mit.edu	37	X	102337226	102337226	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:102337226T>G	uc004eju.2	-	9	918	c.847A>C	c.(847-849)AGC>CGC	p.S283R	NXF3_uc010noi.1_Missense_Mutation_p.S133R|NXF3_uc011mrw.1_Missense_Mutation_p.S283R|NXF3_uc011mrx.1_Missense_Mutation_p.S194R	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	283						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CACACTGGGCTTCTGTCCGCA	0.537000													39	165					0	0	0.009718	0	0	
ACSL4	2182	broad.mit.edu	37	X	108887374	108887374	+	Missense_Mutation	SNP	T	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:108887374T>C	uc004eoi.2	-	17	2525	c.2020A>G	c.(2020-2022)AGC>GGC	p.S674G	ACSL4_uc004eoj.2_Missense_Mutation_p.S633G|ACSL4_uc004eok.2_Missense_Mutation_p.S633G	NM_022977	NP_075266	O60488	ACSL4_HUMAN	acyl-CoA synthetase long-chain family member 4	674	Cytoplasmic (Potential).				fatty acid metabolic process|learning or memory|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			large_intestine(1)|lung(1)|ovary(1)	3					Icosapent(DB00159)|Troglitazone(DB00197)	GGCTCTGGGCTTAATCGAACC	0.323000													21	79					0	0	0.012319	0	0	
DOCK11	139818	broad.mit.edu	37	X	117788650	117788650	+	Missense_Mutation	SNP	A	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:117788650A>T	uc004eqp.2	+	43	4844	c.4781A>T	c.(4780-4782)GAG>GTG	p.E1594V	DOCK11_uc004eqq.2_Missense_Mutation_p.E1373V	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1594	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						AAGGAGCATGAGAAAGACCCT	0.468000													22	70					0	0	0.010504	0	0	
ODZ1	10178	broad.mit.edu	37	X	123657356	123657356	+	Missense_Mutation	SNP	A	C	C			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:123657356A>C	uc004euj.2	-	17	2955	c.2891T>G	c.(2890-2892)GTC>GGC	p.V964G	ODZ1_uc011muj.1_Missense_Mutation_p.V963G|ODZ1_uc010nqy.2_Missense_Mutation_p.V964G	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	964	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTGCATGGTGACTTTCTCTAC	0.478000													35	67					0	0	0.017118	0	0	
DCAF12L2	340578	broad.mit.edu	37	X	125298907	125298907	+	Missense_Mutation	SNP	G	A	A			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:125298907G>A	uc004euk.1	-	1	1028	c.1001C>T	c.(1000-1002)CCG>CTG	p.P334L		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	334										lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GCGCTGGCGCGGATCCAGGAA	0.617000													48	78					0	0	0.013114	0	0	
CXorf40A	91966	broad.mit.edu	37	X	148627278	148627278	+	Missense_Mutation	SNP	G	T	T	rs144189124	byFrequency	TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:148627278G>T	uc004fdb.2	+	4	374	c.102G>T	c.(100-102)CAG>CAT	p.Q34H	CXorf40A_uc011mxm.1_Missense_Mutation_p.Q34H|CXorf40A_uc011mxn.1_Missense_Mutation_p.Q34H|CXorf40A_uc004fdd.2_Missense_Mutation_p.Q34H|CXorf40A_uc004fde.1_Missense_Mutation_p.Q34H|CXorf40A_uc011mxo.1_Missense_Mutation_p.A124S|CXorf40A_uc004fdg.2_Missense_Mutation_p.Q34H|CXorf40A_uc004fdf.2_Missense_Mutation_p.Q34H|CXorf40A_uc004fdh.2_Missense_Mutation_p.Q34H|CXorf40A_uc010nsy.2_Missense_Mutation_p.Q34H|CXorf40A_uc004fdi.2_Missense_Mutation_p.Q51H	NM_178124	NP_835225	Q8TE69	CX04A_HUMAN	chromosome X open reading frame 40	34							protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					TGAGCAGCCAGCGGAACTGTA	0.592000													8	48					7.48243e-07	7.79162e-07	0.006214	1	0	
GABRQ	55879	broad.mit.edu	37	X	151817720	151817720	+	Silent	SNP	C	T	T			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:151817720C>T	uc004ffp.1	+	5	554	c.534C>T	c.(532-534)ACC>ACT	p.T178T		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	178	Extracellular (Potential).					cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GCAGACTCACCACTACAGCAG	0.507000													8	75					0	0	0.003080	0	0	
PLXNB3	5365	broad.mit.edu	37	X	153042361	153042361	+	Missense_Mutation	SNP	T	G	G			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chrX:153042361T>G	uc004fii.2	+	29	5027	c.4853T>G	c.(4852-4854)GTG>GGG	p.V1618G	PLXNB3_uc010nuk.2_Missense_Mutation_p.V1641G|PLXNB3_uc011mzd.1_Missense_Mutation_p.V1257G|SRPK3_uc004fik.2_5'UTR	NM_005393	NP_005384	Q9ULL4	PLXB3_HUMAN	plexin B3 isoform 1	1618	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	protein binding|receptor activity			lung(1)	1	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)					GGAGCAACAGTGGGGCTCGTC	0.612000													4	7					0	0	0.009096	0	0	
ARID1A	8289	broad.mit.edu	37	1	27106130	27106134	+	Frame_Shift_Del	DEL	TGTTG	-	-			TCGA-BR-8687-01A-11D-2394-08	TCGA-BR-8687-10A-01D-2394-08									Somatic	Phase_I	Capture				Illumina GAIIx	fd5f700f-a8cf-471b-a268-6ec604c3bed6	54a3ff23-3014-4dc2-8bf9-d5c6b3e63618	g.chr1:27106130_27106134delTGTTG	uc001bmv.1	+	20	6114_6118	c.5741_5745delTGTTG	c.(5740-5745)ATGTTGfs	p.M1914fs	ARID1A_uc001bmu.1_Frame_Shift_Del_p.M1697fs|ARID1A_uc001bmx.1_Frame_Shift_Del_p.M760fs|ARID1A_uc009vsm.1_Frame_Shift_Del_p.M242fs|ARID1A_uc009vsn.1_Frame_Shift_Del_p.M156fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1914_1915					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		ATGGATGACATGTTGTCTACTCGGT	0.541			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								40	62	---	---	---	---						.
