Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut	init_n_lod
GPR153	387509	broad.mit.edu	37	1	6314708	6314708	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:6314708G>A	uc001amp.1	-	2	518	c.258C>T	c.(256-258)TTC>TTT	p.F86F		NM_207370	NP_997253	Q6NV75	GP153_HUMAN	G protein-coupled receptor 153	86	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0	Ovarian(185;0.0634)	all_cancers(23;8.07e-33)|all_epithelial(116;4.45e-18)|all_lung(118;1.09e-06)|all_neural(13;3.68e-06)|Lung NSC(185;1.52e-05)|all_hematologic(16;2.39e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00475)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;1.91e-37)|GBM - Glioblastoma multiforme(13;4.87e-29)|OV - Ovarian serous cystadenocarcinoma(86;3.03e-19)|Colorectal(212;1.33e-07)|COAD - Colon adenocarcinoma(227;1.36e-05)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000911)|BRCA - Breast invasive adenocarcinoma(365;0.00109)|STAD - Stomach adenocarcinoma(132;0.00313)|READ - Rectum adenocarcinoma(331;0.0642)|Lung(427;0.246)		AGGTGGACACGAAGACCTTGC	0.607000													5	187					0	0	0.014758	0	0	
MYOM3	127294	broad.mit.edu	37	1	24424487	24424487	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:24424487T>C	uc001bin.3	-	7	834	c.671A>G	c.(670-672)GAC>GGC	p.D224G	MYOM3_uc001bim.3_5'Flank|MYOM3_uc001bio.2_Missense_Mutation_p.D224G|MYOM3_uc001bip.1_5'UTR	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	224	Ig-like C2-type 1.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		AGTTGCTGAGTCCTCAATGGC	0.582000													6	233					0	0	0.001168	0	0	
MFSD2A	84879	broad.mit.edu	37	1	40424370	40424370	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:40424370C>T	uc001cev.2	+	3	446	c.265C>T	c.(265-267)CAG>TAG	p.Q89*	MFSD2A_uc010ojb.1_Intron|MFSD2A_uc001ceu.2_Intron|MFSD2A_uc010ojc.1_Intron|MFSD2A_uc009vvy.2_Intron	NM_001136493	NP_001129965	Q8NA29	MFS2A_HUMAN	major facilitator superfamily domain containing	89	Helical; (Potential).				transmembrane transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)|pancreas(1)	2						CTCCTCATTCCAGGTGGGCCC	0.572000													5	267					0	0	0.001168	0	0	
TIE1	7075	broad.mit.edu	37	1	43772633	43772633	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:43772633C>T	uc001ciu.2	+	4	686	c.607C>T	c.(607-609)CTG>TTG	p.L203L	TIE1_uc010okd.1_Silent_p.L203L|TIE1_uc010oke.1_Silent_p.L158L|TIE1_uc009vwq.2_Silent_p.L203L|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'Flank|TIE1_uc010okb.1_Silent_p.L203L|TIE1_uc010okc.1_Silent_p.L203L	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	203	Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGCCAGCCCCCTGGGCAGCGC	0.632000													3	102					0	0	0.004672	0	0	
C8A	731	broad.mit.edu	37	1	57349320	57349320	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:57349320C>A	uc001cyo.2	+	6	953	c.821C>A	c.(820-822)TCA>TAA	p.S274*		NM_000562	NP_000553	P07357	CO8A_HUMAN	complement component 8, alpha polypeptide	274	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular space|membrane attack complex				ovary(1)|central_nervous_system(1)|skin(1)	3						CAAGACACTTCATTCTTGAAC	0.403000													10	68					7.48243e-07	8.08585e-07	0.006214	1	0	
FCGR1C	100132417	broad.mit.edu	37	1	149378152	149378152	+	RNA	SNP	T	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:149378152T>A	uc010pbh.1	+	6		c.1193T>A				NR_027484				Homo sapiens cDNA FLJ77773 complete cds, highly similar to Homo sapiens Fc fragment of IgG, high affinity Ia, receptor (CD64) (FCGR1A), mRNA.												0						GCTCAGTGGGTGGCCATCGAT	0.552000													12	26					0	0	0.008871	0	0	
NCSTN	23385	broad.mit.edu	37	1	160327004	160327004	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:160327004C>T	uc001fvx.2	+	16	2092	c.1968C>T	c.(1966-1968)ATC>ATT	p.I656I	NCSTN_uc001fvy.2_Silent_p.I636I|NCSTN_uc010pjf.1_Silent_p.I518I|NCSTN_uc001fvz.2_Silent_p.I436I|NCSTN_uc010pjg.1_Silent_p.I398I	NM_015331	NP_056146	Q92542	NICA_HUMAN	nicastrin precursor	656	Extracellular (Potential).				amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane|melanosome	protein binding			ovary(1)|lung(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			GGAAAGATATCCGTGCCCGGA	0.517000													22	56					0	0	0.014323	0	0	
PBX1	5087	broad.mit.edu	37	1	164761842	164761842	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:164761842C>T	uc001gct.2	+	3	635	c.377C>T	c.(376-378)TCG>TTG	p.S126L	PBX1_uc010pku.1_Missense_Mutation_p.S126L|PBX1_uc010pkv.1_Missense_Mutation_p.S43L|PBX1_uc001gcs.2_Missense_Mutation_p.S126L|PBX1_uc010pkw.1_Missense_Mutation_p.S16L	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	126					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GGCGGAGGGTcggcggcagcg	0.507000			T	TCF3|EWSR1	pre B-ALL|myoepithelioma								5	24					0	0	0.014758	0	0	
SLC9A11	284525	broad.mit.edu	37	1	173552664	173552664	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:173552664G>A	uc001giz.2	-	6	1044	c.621C>T	c.(619-621)ATC>ATT	p.I207I	SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	207					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TAGAAAAGTGGATTCTGTTGC	0.289000													19	135					0	0	0.010504	0	0	
KCNT2	343450	broad.mit.edu	37	1	196274444	196274444	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:196274444G>A	uc001gtd.1	-	22	2575	c.2515C>T	c.(2515-2517)CTA>TTA	p.L839L	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.L765L|KCNT2_uc001gtf.1_Silent_p.L815L|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Silent_p.L815L|KCNT2_uc001gth.1_Silent_p.L336L	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	839	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GGGTGAGTTAGCTCTGTGATA	0.353000													21	62					0	0	0.012319	0	0	
ESRRG	2104	broad.mit.edu	37	1	216741435	216741435	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:216741435G>T	uc001hkw.1	-	4	761	c.595C>A	c.(595-597)CGT>AGT	p.R199S	ESRRG_uc001hky.1_Missense_Mutation_p.R176S|ESRRG_uc009xdp.1_Missense_Mutation_p.R176S|ESRRG_uc001hkz.1_Missense_Mutation_p.R137S|ESRRG_uc010puc.1_Missense_Mutation_p.R176S|ESRRG_uc001hla.1_Missense_Mutation_p.R176S|ESRRG_uc001hlb.1_Missense_Mutation_p.R176S|ESRRG_uc010pud.1_Missense_Mutation_p.R7S|ESRRG_uc001hlc.1_Missense_Mutation_p.R176S|ESRRG_uc001hld.1_Missense_Mutation_p.R176S|ESRRG_uc001hkx.1_Missense_Mutation_p.R204S|ESRRG_uc009xdo.1_Missense_Mutation_p.R176S|ESRRG_uc001hle.1_Missense_Mutation_p.R176S	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	199	Nuclear receptor.				positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CTGTCAAGACGCACCCCTGTG	0.507000													14	113					6.81908e-15	7.42891e-15	0.020292	1	0	
RYR2	6262	broad.mit.edu	37	1	237796936	237796936	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:237796936G>A	uc001hyl.1	+	43	6734	c.6614G>A	c.(6613-6615)CGT>CAT	p.R2205H		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2205	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TACTTCTGTCGTATAAGTAGG	0.388000													65	232					0	0	0.014410	0	0	
FMN2	56776	broad.mit.edu	37	1	240256750	240256750	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:240256750G>A	uc010pyd.1	+	1	1566	c.1341G>A	c.(1339-1341)CCG>CCA	p.P447P	FMN2_uc010pye.1_Silent_p.P447P	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	447					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGAGGCGGCCGGAACCCTCCC	0.692000													6	45					0	0	0.001984	0	0	
SMYD3	64754	broad.mit.edu	37	1	246021942	246021942	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr1:246021942G>A	uc001ibl.2	-	10	1027	c.932C>T	c.(931-933)GCA>GTA	p.A311V	SMYD3_uc001ibk.2_Missense_Mutation_p.A252V|SMYD3_uc001ibi.2_Missense_Mutation_p.A122V|SMYD3_uc001ibj.2_Missense_Mutation_p.A122V	NM_022743	NP_073580	Q9H7B4	SMYD3_HUMAN	SET and MYND domain containing 3	311						cytoplasm|nucleus	histone-lysine N-methyltransferase activity|protein binding|zinc ion binding				0	all_cancers(71;0.000291)|all_epithelial(71;0.000174)|Ovarian(71;0.0377)|all_lung(81;0.0568)|Lung NSC(105;0.0804)|Breast(184;0.173)|Melanoma(84;0.242)	all_cancers(173;0.0496)|Acute lymphoblastic leukemia(190;0.164)	OV - Ovarian serous cystadenocarcinoma(106;0.0129)	all cancers(4;0.028)|GBM - Glioblastoma multiforme(49;0.0537)		GCTTATGATTGCCTGGCACAT	0.448000													5	155					0	0	0.014758	0	0	
ITIH5	80760	broad.mit.edu	37	10	7618701	7618701	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr10:7618701C>T	uc001ijq.2	-	10	1772	c.1693G>A	c.(1693-1695)GAT>AAT	p.D565N	ITIH5_uc001ijp.2_Missense_Mutation_p.D351N|ITIH5_uc001ijr.1_Missense_Mutation_p.D565N	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	565					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						CCCTCTCCATCGCCTCCAGGC	0.567000													4	75					0	0	0.009096	0	0	
PCDH15	65217	broad.mit.edu	37	10	55755492	55755492	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr10:55755492G>A	uc001jju.1	-	21	3180	c.2785C>T	c.(2785-2787)CGA>TGA	p.R929*	PCDH15_uc010qhq.1_Nonsense_Mutation_p.R934*|PCDH15_uc010qhr.1_Nonsense_Mutation_p.R929*|PCDH15_uc010qhs.1_Nonsense_Mutation_p.R941*|PCDH15_uc010qht.1_Nonsense_Mutation_p.R936*|PCDH15_uc010qhu.1_Nonsense_Mutation_p.R929*|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Nonsense_Mutation_p.R929*|PCDH15_uc010qhw.1_Nonsense_Mutation_p.R892*|PCDH15_uc010qhx.1_Nonsense_Mutation_p.R858*|PCDH15_uc010qhy.1_Nonsense_Mutation_p.R934*|PCDH15_uc010qhz.1_Nonsense_Mutation_p.R929*|PCDH15_uc010qia.1_Nonsense_Mutation_p.R907*|PCDH15_uc010qib.1_Nonsense_Mutation_p.R907*|PCDH15_uc001jjw.2_Nonsense_Mutation_p.R929*	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	929	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTGTATATTCGTTTACTAAAG	0.408000										HNSCC(58;0.16)			38	108					0	0	0.021022	0	0	
KIAA1274	27143	broad.mit.edu	37	10	72285718	72285718	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr10:72285718C>T	uc001jrd.3	+	2	292	c.11C>T	c.(10-12)ACG>ATG	p.T4M		NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	4										ovary(2)|central_nervous_system(1)	3						ATGGGTACAACGGCCAGCACA	0.612000													5	16					0	0	0.004482	0	0	
GBF1	8729	broad.mit.edu	37	10	104135332	104135332	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr10:104135332C>T	uc001kux.1	+	30	4114	c.3874C>T	c.(3874-3876)CCT>TCT	p.P1292S	GBF1_uc001kuy.1_Missense_Mutation_p.P1292S|GBF1_uc001kuz.1_Missense_Mutation_p.P1293S	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1292					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		GGCAGATGCACCTGATGCCGG	0.562000													12	32					0	0	0.003163	0	0	
SORCS3	22986	broad.mit.edu	37	10	106927067	106927067	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr10:106927067G>A	uc001kyi.1	+	13	2088	c.1861G>A	c.(1861-1863)GTG>ATG	p.V621M		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	621	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		TGGTGCCCTCGTGGCCATGAA	0.378000													18	69					0	0	0.004990	0	0	
C10orf90	118611	broad.mit.edu	37	10	128193340	128193340	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr10:128193340C>T	uc001ljq.2	-	3	550	c.429G>A	c.(427-429)ACG>ACA	p.T143T	C10orf90_uc001ljp.2_Silent_p.T96T|C10orf90_uc010qum.1_Silent_p.T240T|C10orf90_uc009yao.2_Silent_p.T240T|C10orf90_uc001ljs.1_Silent_p.T96T	NM_001004298	NP_001004298	Q96M02	CJ090_HUMAN	hypothetical protein LOC118611	143										ovary(1)|skin(1)	2		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		CGCGTCTGGCCGTGATGGTGA	0.687000											OREG0020616	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	95					0	0	0.016723	0	0	
MUC5B	727897	broad.mit.edu	37	11	1267092	1267092	+	Silent	SNP	A	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:1267092A>G	uc009ycr.1	+	49	10857	c.10731A>G	c.(10729-10731)ACA>ACG	p.T3577T	MUC5B_uc001ltb.2_Silent_p.T2997T	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	2994	7 X Cys-rich subdomain repeats.|Thr-rich.|17 X approximate tandem repeats, Ser/Thr- rich.			Missing (in Ref. 6; AAB61398).	cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGATCCTCACAGAGCAGACCA	0.657000													4	96					0	0	0.009096	0	0	
MUC5B	727897	broad.mit.edu	37	11	1275540	1275540	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:1275540G>A	uc009ycr.1	+	56	16573	c.16447G>A	c.(16447-16449)GTC>ATC	p.V5483I	MUC5B_uc001ltb.2_Missense_Mutation_p.V5149I	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	5146	VWFD 4.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CATGGATATCGTCCTCACTGT	0.657000													5	30					0	0	0.001984	0	0	
LOC650368	650368	broad.mit.edu	37	11	3427759	3427759	+	RNA	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:3427759C>T	uc010qxs.1	+	9		c.752C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						TGTCTGCACACGTCCTGCAGT	0.612000													4	53					0	0	0.009096	0	0	
BDNF	627	broad.mit.edu	37	11	27679474	27679474	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:27679474G>A	uc010rdu.1	-	2	1489	c.638C>T	c.(637-639)TCG>TTG	p.S213L	BDNFOS_uc001mrm.2_Intron|BDNFOS_uc009yij.2_Intron|BDNFOS_uc009yik.2_Intron|BDNFOS_uc009yil.2_Intron|BDNFOS_uc001mrp.2_Intron|BDNFOS_uc009yim.2_Intron|BDNFOS_uc009yin.2_Intron|BDNFOS_uc009yio.2_Intron|BDNFOS_uc009yip.2_Intron|BDNFOS_uc001mrn.2_Intron|BDNFOS_uc009yiq.2_Intron|BDNFOS_uc001mro.2_Intron|BDNFOS_uc009yir.2_Intron|BDNFOS_uc009yis.2_Intron|BDNFOS_uc009yit.2_Intron|BDNFOS_uc009yiu.2_Intron|BDNFOS_uc009yiv.2_Intron|BDNFOS_uc009yiw.2_Intron|BDNFOS_uc009yix.2_Intron|BDNFOS_uc009yiy.2_Intron|BDNFOS_uc009yiz.2_Intron|BDNFOS_uc001mrq.3_Intron|BDNFOS_uc001mrr.3_Intron|BDNFOS_uc009yja.2_Intron|BDNFOS_uc009yjb.2_Intron|BDNF_uc010rdv.1_Missense_Mutation_p.S213L|BDNF_uc001mrt.2_Missense_Mutation_p.S228L|BDNF_uc010rdw.1_Missense_Mutation_p.S213L|BDNF_uc009yjd.2_Missense_Mutation_p.S213L|BDNF_uc001mru.2_Missense_Mutation_p.S213L|BDNF_uc010rdx.1_Missense_Mutation_p.S213L|BDNF_uc010rdy.1_Missense_Mutation_p.S213L|BDNF_uc009yjg.2_Missense_Mutation_p.S213L|BDNF_uc009yje.2_Missense_Mutation_p.S295L|BDNF_uc009yjf.2_Missense_Mutation_p.S242L|BDNF_uc001mrv.2_Missense_Mutation_p.S213L|BDNF_uc001mrw.3_Missense_Mutation_p.S213L|BDNF_uc001mrx.2_Missense_Mutation_p.S213L|BDNF_uc001mry.3_Missense_Mutation_p.S213L|BDNF_uc001mrz.3_Missense_Mutation_p.S213L|BDNF_uc001msa.2_Missense_Mutation_p.S221L	NM_001143816	NP_001137288	P23560	BDNF_HUMAN	brain-derived neurotrophic factor isoform a	213						extracellular region	growth factor activity				0						CCGCACGTACGACTGGGTAGT	0.473000													6	310					0	0	0.001984	0	0	
ATG2A	23130	broad.mit.edu	37	11	64673986	64673986	+	Silent	SNP	C	T	T	rs75814919	by1000genomes	TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:64673986C>T	uc001obx.2	-	21	3118	c.3003G>A	c.(3001-3003)CCG>CCA	p.P1001P		NM_015104	NP_055919	Q2TAZ0	ATG2A_HUMAN	autophagy related 2A	1001							protein binding			ovary(1)|central_nervous_system(1)	2						GACTGGGCAGCGGGTAGTCAT	0.677000													4	34					0	0	0.014758	0	0	
GAL3ST3	89792	broad.mit.edu	37	11	65810465	65810465	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:65810465C>T	uc001ogv.2	-	2	969	c.809G>A	c.(808-810)CGC>CAC	p.R270H	GAL3ST3_uc001ogw.2_Missense_Mutation_p.R270H	NM_033036	NP_149025	Q96A11	G3ST3_HUMAN	galactose-3-O-sulfotransferase 3	270	Lumenal (Potential).				monosaccharide metabolic process|oligosaccharide metabolic process|poly-N-acetyllactosamine metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane	3'-phosphoadenosine 5'-phosphosulfate binding|carbohydrate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(1)	1						GCTGGCGGCGCGCGCGTTGAG	0.582000													3	10					0	0	0.004672	0	0	
RPS6KB2	6199	broad.mit.edu	37	11	67201943	67201943	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:67201943C>T	uc001old.2	+	13	1225	c.1143C>T	c.(1141-1143)AAC>AAT	p.N381N	RPS6KB2_uc001olf.2_Silent_p.N181N|RPS6KB2_uc001olg.2_Silent_p.N381N|RPS6KB2_uc009yrq.2_Silent_p.N181N|RPS6KB2_uc001ole.2_RNA|RPS6KB2_uc001olh.2_RNA|RPS6KB2_uc009yrr.2_Silent_p.N212N	NM_003952	NP_003943	Q9UBS0	KS6B2_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	381	AGC-kinase C-terminal.				nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of translational initiation|translation	nucleoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|stomach(1)|lung(1)|salivary_gland(1)	7			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			AGAGTGCCAACCAGGCCTTCC	0.637000													12	39					0	0	0.016723	0	0	
CABP4	57010	broad.mit.edu	37	11	67223662	67223662	+	Missense_Mutation	SNP	C	T	T	rs121917828	byFrequency	TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:67223662C>T	uc001olo.2	+	2	447	c.370C>T	c.(370-372)CGC>TGC	p.R124C	CABP4_uc001oln.2_Missense_Mutation_p.R19C	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	124			R -> C (in CSNB2B).		visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			CCTGCAGGACCGCGAACTGGG	0.677000													13	82					0	0	0.004007	0	0	
GAL	51083	broad.mit.edu	37	11	68456365	68456365	+	Missense_Mutation	SNP	T	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:68456365T>C	uc001oob.2	+	5	490	c.272T>C	c.(271-273)ATT>ACT	p.I91T		NM_015973	NP_057057	P22466	GALA_HUMAN	galanin preproprotein	91					growth hormone secretion|insulin secretion|neuropeptide signaling pathway|smooth muscle contraction	extracellular region	neuropeptide hormone activity				0	Esophageal squamous(3;7.33e-10)	Melanoma(852;0.0749)	LUAD - Lung adenocarcinoma(13;0.0514)	Kidney(183;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(183;3.23e-08)|Lung(977;0.000152)|LUSC - Lung squamous cell carcinoma(976;0.00154)		CGCACAATCATTGAGTTTCTG	0.398000													14	96					0	0	0.006122	0	0	
C2CD2L	9854	broad.mit.edu	37	11	118986773	118986773	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr11:118986773G>A	uc001pvo.2	+	14	2287	c.1928G>A	c.(1927-1929)GGC>GAC	p.G643D	C2CD2L_uc001pvn.2_Missense_Mutation_p.G644D	NM_014807	NP_055622	O14523	C2C2L_HUMAN	transmembrane protein 24	643						integral to membrane					0						CTGCGCAGCGGCACTAAGCTC	0.632000													3	49					0	0	0.009096	0	0	
KDM5A	5927	broad.mit.edu	37	12	498207	498207	+	Silent	SNP	T	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:498207T>C	uc001qif.1	-	1	414	c.51A>G	c.(49-51)CCA>CCG	p.P17P	KDM5A_uc001qie.1_Silent_p.P17P|CCDC77_uc009zdk.2_5'Flank|CCDC77_uc010sdp.1_5'Flank|KDM5A_uc010sdn.1_Silent_p.P17P|KDM5A_uc010sdo.1_Silent_p.P17P	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	17					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						CGGGGCACTCTGGCGGTGGCA	0.677000			T 	NUP98	AML								11	36					0	0	0.008291	0	0	
CD163L1	283316	broad.mit.edu	37	12	7551181	7551181	+	Splice_Site	SNP	C	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:7551181C>G	uc001qsy.2	-	7	1435	c.1409_splice	c.e7-1	p.D470_splice	CD163L1_uc010sge.1_Splice_Site_p.D480_splice	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1							extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TCTGCCTTATCTGCAAGCAAG	0.448000													6	42					0	0	0.010729	0	0	
KRAS	3845	broad.mit.edu	37	12	25380275	25380275	+	Missense_Mutation	SNP	T	G	G	rs17851045		TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:25380275T>G	uc001rgp.1	-	3	364	c.183A>C	c.(181-183)CAA>CAC	p.Q61H	KRAS_uc001rgq.1_Missense_Mutation_p.Q61H	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	61	GTP.		Q -> R (in a colorectal cancer sample; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.Q61H(140)|p.Q61L(51)|p.Q61R(44)|p.Q61K(24)|p.Q61P(11)|p.Q61E(10)|p.Q61D(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			TGTACTCCTCTTGACCTGCTG	0.423000	Q61H(T3M4_PANCREAS)|Q61H(HS766T_PANCREAS)|Q61H(NCIH460_LUNG)|Q61H(NCIH1155_LUNG)|Q61H(CL11_LARGE_INTESTINE)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			5	136					0	0	0.014758	0	0	
OS9	10956	broad.mit.edu	37	12	58087953	58087953	+	Silent	SNP	G	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:58087953G>C	uc001spj.2	+	1	68	c.9G>C	c.(7-9)GCG>GCC	p.A3A	OS9_uc010srx.1_Silent_p.A3A|OS9_uc001spk.2_Silent_p.A3A|OS9_uc001spl.2_Silent_p.A3A|OS9_uc001spm.2_Silent_p.A3A|OS9_uc001spn.2_Silent_p.A3A|OS9_uc010sry.1_Silent_p.A3A|OS9_uc010srz.1_Silent_p.A3A	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	3					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			AGATGGCGGCGGAAACGCTGC	0.577000													10	174					0	0	0.010729	0	0	
LRRIQ1	84125	broad.mit.edu	37	12	85623340	85623340	+	Missense_Mutation	SNP	A	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:85623340A>C	uc001tac.2	+	25	4979	c.4868A>C	c.(4867-4869)AAA>ACA	p.K1623T		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1623										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GCAAATGAAAAATTAGAACGG	0.373000													4	234					0	0	0.009096	0	0	
VEZT	55591	broad.mit.edu	37	12	95660360	95660360	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:95660360C>T	uc001tdz.2	+	5	767	c.662C>T	c.(661-663)GCT>GTT	p.A221V	VEZT_uc009zsy.1_Missense_Mutation_p.A63V|VEZT_uc001tdr.2_Missense_Mutation_p.A63V|VEZT_uc001tds.2_Missense_Mutation_p.A173V|VEZT_uc001tdt.2_Missense_Mutation_p.A173V|VEZT_uc009zsz.1_Missense_Mutation_p.A221V|VEZT_uc001tdv.2_Missense_Mutation_p.A190V|VEZT_uc001tdw.1_Missense_Mutation_p.A173V|VEZT_uc009zta.1_Missense_Mutation_p.A173V	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	221						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						GTGAGAAAAGCTTTACGTCTC	0.353000													39	127					0	0	0.008740	0	0	
HCFC2	29915	broad.mit.edu	37	12	104492124	104492124	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:104492124G>A	uc001tkj.3	+	13	1847	c.1744G>A	c.(1744-1746)GAG>AAG	p.E582K	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	582	Fibronectin type-III 2.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						AAATTAGAAAGAGACTCCTTC	0.338000													5	82					0	0	0.001168	0	0	
CRY1	1407	broad.mit.edu	37	12	107386583	107386583	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:107386583C>T	uc001tmi.3	-	12	2602	c.1743G>A	c.(1741-1743)CAG>CAA	p.Q581Q		NM_004075	NP_004066	Q16526	CRY1_HUMAN	cryptochrome 1 (photolyase-like)	581					DNA repair|protein-chromophore linkage|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	blue light photoreceptor activity|DNA photolyase activity|double-stranded DNA binding|nucleotide binding|protein binding			ovary(3)	3						TGCTCTGTCTCTGGACTTTAG	0.368000													8	255					0	0	0.003080	0	0	
OAS3	4940	broad.mit.edu	37	12	113379501	113379501	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr12:113379501C>T	uc001tug.2	+	2	391	c.304C>T	c.(304-306)CGG>TGG	p.R102W	OAS3_uc001tue.2_Missense_Mutation_p.R102W|OAS3_uc001tuf.2_Missense_Mutation_p.R102W	NM_006187	NP_006178	Q9Y6K5	OAS3_HUMAN	2'-5'oligoadenylate synthetase 3	102	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	microsome	ATP binding|nucleotidyltransferase activity|RNA binding			central_nervous_system(1)	1						CAGTGAGATGCGGGCATCGCT	0.587000													4	116					0	0	0.009096	0	0	
SACS	26278	broad.mit.edu	37	13	23928673	23928673	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr13:23928673G>A	uc001uon.2	-	8	2667	c.2078C>T	c.(2077-2079)TCA>TTA	p.S693L	SACS_uc001uoo.2_Missense_Mutation_p.S546L|SACS_uc001uop.1_Missense_Mutation_p.S480L|SACS_uc001uoq.1_Missense_Mutation_p.S546L	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	693					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		ATATTCTGCTGAGGTAATATA	0.468000													7	90					0	0	0.001984	0	0	
TSC22D1	8848	broad.mit.edu	37	13	45147517	45147517	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr13:45147517G>A	uc001uzn.3	-	1	3185	c.2694C>T	c.(2692-2694)TCC>TCT	p.S898S	TSC22D1_uc001uzo.1_Intron	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	898					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		ATGATTGTGCGGAGAACTGGG	0.453000													36	253					0	0	0.021022	0	0	
ITGBL1	9358	broad.mit.edu	37	13	102231736	102231736	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr13:102231736C>T	uc001vpb.2	+	5	904	c.685C>T	c.(685-687)CGA>TGA	p.R229*	ITGBL1_uc010agb.2_Nonsense_Mutation_p.R180*|ITGBL1_uc001vpc.3_Nonsense_Mutation_p.R88*	NM_004791	NP_004782	O95965	ITGBL_HUMAN	integrin, beta-like 1 (with EGF-like repeat	229	Cysteine-rich tandem repeats.|IV.				cell-matrix adhesion|integrin-mediated signaling pathway	extracellular region|integrin complex	binding|receptor activity			ovary(1)|skin(1)	2	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GGAAAGCAAGCGAAGATGCAC	0.453000													4	129					0	0	0.009096	0	0	
SLC22A17	51310	broad.mit.edu	37	14	23817454	23817454	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:23817454C>T	uc001wjl.2	-	5	810	c.754G>A	c.(754-756)GCT>ACT	p.A252T	SLC22A17_uc010akk.2_Missense_Mutation_p.A34T|SLC22A17_uc001wjn.2_RNA|SLC22A17_uc001wjm.2_Missense_Mutation_p.A252T	NM_020372	NP_065105	Q8WUG5	S22AH_HUMAN	solute carrier family 22, member 17 isoform a	252					siderophore transport	integral to organelle membrane|integral to plasma membrane|vacuolar membrane	transmembrane receptor activity|transmembrane transporter activity				0	all_cancers(95;7.12e-06)			GBM - Glioblastoma multiforme(265;0.00643)		ACAGACTGAGCCTCCTCAATC	0.642000													35	124					0	0	0.013726	0	0	
THTPA	79178	broad.mit.edu	37	14	24026387	24026387	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:24026387C>G	uc001wkh.3	+	2	791	c.421C>G	c.(421-423)CAG>GAG	p.Q141E	THTPA_uc001wkb.3_Intron|THTPA_uc001wkg.3_Missense_Mutation_p.Q141E|THTPA_uc010akr.2_Intron|THTPA_uc001wki.3_Intron	NM_001126339	NP_001119811	Q9BU02	THTPA_HUMAN	thiamine triphosphatase	141					dephosphorylation|generation of precursor metabolites and energy|thiamine metabolic process	cytosol|nucleolus|soluble fraction	thiamin-triphosphatase activity				0	all_cancers(95;0.000251)			GBM - Glioblastoma multiforme(265;0.00643)	Thiamine(DB00152)	AGAGGAGCCACAGCTCAGGGT	0.577000													3	42					0	0	0.009096	0	0	
REC8	9985	broad.mit.edu	37	14	24648871	24648871	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:24648871A>T	uc001wmr.2	+	19	1817	c.1390A>T	c.(1390-1392)ATG>TTG	p.M464L	REC8_uc001wms.2_Missense_Mutation_p.M464L	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	464	Glu-rich.				mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		TGAGGTGCCCATGGAGATGCC	0.637000													5	112					0	0	0.014758	0	0	
PRKD1	5587	broad.mit.edu	37	14	30105555	30105555	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:30105555G>A	uc001wqh.2	-	7	1312	c.1131C>T	c.(1129-1131)AAC>AAT	p.N377N		NM_002742	NP_002733	Q15139	KPCD1_HUMAN	protein kinase D1	377					cell proliferation|intracellular signal transduction|sphingolipid metabolic process	cytosol|integral to plasma membrane	ATP binding|metal ion binding|protein binding|protein kinase C activity			lung(3)|large_intestine(2)|ovary(2)|skin(1)	8	Hepatocellular(127;0.0604)		LUAD - Lung adenocarcinoma(48;0.00527)|Lung(238;0.0252)	GBM - Glioblastoma multiforme(265;0.00888)		CGCCACTGTCGTTCTGGCACT	0.542000													10	290					0	0	0.006214	0	0	
LRFN5	145581	broad.mit.edu	37	14	42360992	42360992	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:42360992A>G	uc001wvm.2	+	4	3123	c.1925A>G	c.(1924-1926)AAG>AGG	p.K642R	LRFN5_uc010ana.2_Intron	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	642	Cytoplasmic (Potential).					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		GTGTCCCAAAAGCAGAAAAGA	0.448000										HNSCC(30;0.082)			4	64					0	0	0.009096	0	0	
ZFYVE26	23503	broad.mit.edu	37	14	68220880	68220880	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:68220880G>A	uc001xka.2	-	38	7175	c.7036C>T	c.(7036-7038)CGG>TGG	p.R2346W	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkb.2_Missense_Mutation_p.R192W	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	2346					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		CTTTCGCACCGATGCAAGAAC	0.517000													13	344					0	0	0.016723	0	0	
GOLGA5	9950	broad.mit.edu	37	14	93273162	93273162	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:93273162C>G	uc001yaz.1	+	3	808	c.626C>G	c.(625-627)CCT>CGT	p.P209R		NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	209	Cytoplasmic (Potential).				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		GCTGCCTGCCCTGACCACACC	0.423000			T	RET	papillary thyroid								20	73					0	0	0.007413	0	0	
ADAM6	8755	broad.mit.edu	37	14	106321163	106321163	+	RNA	SNP	T	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:106321163T>C	uc010tyt.1	-	3600		c.55988A>G			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						TTGGGGTGGCTCTCGGAGATG	0.597000													3	54					0	0	0.009096	0	0	
ADAM6	8755	broad.mit.edu	37	14	107183661	107183661	+	RNA	SNP	G	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr14:107183661G>T	uc010tyt.1	-	29		c.1896C>A								Parts of antibodies, mostly variable regions.												0						CCCCCAGGCTGGACCAAGCCT	0.587000													4	95					1.23904e-05	1.30733e-05	0.014758	1	0	
GOLGA8DP	100132979	broad.mit.edu	37	15	22709152	22709152	+	Missense_Mutation	SNP	G	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr15:22709152G>T	uc010axw.2	-	11	1245	c.347C>A	c.(346-348)GCG>GAG	p.A116E	GOLGA8DP_uc010axx.2_Missense_Mutation_p.A116E|uc010tzw.1_5'Flank	NM_001012423	NP_001012423			golgi autoantigen, golgin subfamily a, 8E												0						GGCCTGGAGCGCTCCTGCCAC	0.607000													3	36					6.4e-05	6.59692e-05	0.004672	1	0	
IGDCC4	57722	broad.mit.edu	37	15	65687476	65687476	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr15:65687476G>C	uc002aou.1	-	8	1742	c.1532C>G	c.(1531-1533)GCC>GGC	p.A511G	IGDCC4_uc002aot.1_Missense_Mutation_p.A99G	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	511	Extracellular (Potential).|Fibronectin type-III 1.					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						GGTGCGGCTGGCTCCCAGCTG	0.572000													6	68					0	0	0.016723	0	0	
UACA	55075	broad.mit.edu	37	15	70980090	70980090	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr15:70980090A>G	uc002asr.2	-	6	598	c.494T>C	c.(493-495)GTA>GCA	p.V165A	UACA_uc010uke.1_Missense_Mutation_p.V165A|UACA_uc002asq.2_Missense_Mutation_p.V152A|UACA_uc010bin.1_Missense_Mutation_p.V151A	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	165						cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						CTAACTTACTACATCTTTGGC	0.363000													27	93					0	0	0.006320	0	0	
CHRNB4	1143	broad.mit.edu	37	15	78917483	78917483	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr15:78917483G>A	uc002bed.1	-	6	1601	c.1489C>T	c.(1489-1491)CGT>TGT	p.R497C	CHRNB4_uc002bee.1_Silent_p.S170S|uc002bef.1_5'Flank	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	497	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						CCTCAGTCACGCTGGGCAGCG	0.617000													69	99					0	0	0.014410	0	0	
GPRC5B	51704	broad.mit.edu	37	16	19883643	19883643	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr16:19883643G>A	uc002dgt.2	-	2	633	c.525C>T	c.(523-525)ATC>ATT	p.I175I	GPRC5B_uc010vav.1_Silent_p.I201I	NM_016235	NP_057319	Q9NZH0	GPC5B_HUMAN	G protein-coupled receptor, family C, group 5,	175	Helical; Name=4; (Potential).									lung(1)|breast(1)|skin(1)	3						CCACAGCGATGATGACTTGCA	0.672000													6	68					0	0	0.010729	0	0	
PARD6A	50855	broad.mit.edu	37	16	67695846	67695846	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr16:67695846C>T	uc002ett.2	+	3	428	c.337C>T	c.(337-339)CGC>TGC	p.R113C	ACD_uc002etp.3_5'Flank|ACD_uc002etq.3_5'Flank|ACD_uc002etr.3_5'Flank|ACD_uc010vjt.1_5'Flank|PARD6A_uc002ets.2_Missense_Mutation_p.R112C|PARD6A_uc002etu.2_5'UTR	NM_016948	NP_058644	Q9NPB6	PAR6A_HUMAN	par-6 partitioning defective 6 homolog alpha	113	Interaction with PRKCI and PRKCZ.				cell cycle|cell division|cell-cell junction maintenance|tight junction assembly|viral reproduction	cytosol|nucleus|ruffle|tight junction	GTP-dependent protein binding|Rho GTPase binding|transcription factor binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0143)|Epithelial(162;0.047)|all cancers(182;0.228)		TCTGCAGCGGCGCAAGAAAGG	0.617000													4	124					0	0	0.014758	0	0	
PMFBP1	83449	broad.mit.edu	37	16	72158753	72158753	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr16:72158753C>G	uc002fcc.3	-	17	2689	c.2517G>C	c.(2515-2517)AAG>AAC	p.K839N	PMFBP1_uc002fcd.2_Missense_Mutation_p.K834N|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.K689N|PMFBP1_uc010cgo.1_Missense_Mutation_p.K130N	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	839	Potential.									ovary(2)	2		Ovarian(137;0.179)				CTGCCAGCATCTTGAGGTCAT	0.547000											OREG0023927	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	334					0	0	0.012213	0	0	
WDR16	146845	broad.mit.edu	37	17	9503472	9503472	+	Missense_Mutation	SNP	T	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr17:9503472T>A	uc002gly.2	+	6	794	c.725T>A	c.(724-726)GTT>GAT	p.V242D	WDR16_uc002glz.2_Missense_Mutation_p.V174D|WDR16_uc010coc.2_Missense_Mutation_p.V252D	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	242						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CTGACAGATGTTGGGCCTGCG	0.443000													5	199					0	0	0.014758	0	0	
MYH8	4626	broad.mit.edu	37	17	10301947	10301947	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr17:10301947G>A	uc002gmm.2	-	30	4087	c.3992C>T	c.(3991-3993)GCC>GTC	p.A1331V	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	1331	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GTGTGCCAGGGCGTTCTTGGC	0.527000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				34	105					0	0	0.017118	0	0	
DDX52	11056	broad.mit.edu	37	17	35993388	35993388	+	Missense_Mutation	SNP	A	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr17:35993388A>G	uc002hoi.1	-	3	385	c.347T>C	c.(346-348)ATT>ACT	p.I116T	DDX52_uc002hoh.1_Missense_Mutation_p.I8T|DDX52_uc002hoj.1_Missense_Mutation_p.I24T	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	116						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				TTTGTCTTCAATCTTTGCTTC	0.299000													4	266					0	0	0.009096	0	0	
ANKFN1	162282	broad.mit.edu	37	17	54428147	54428147	+	Missense_Mutation	SNP	C	T	T	rs141896298	byFrequency	TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr17:54428147C>T	uc002iun.1	+	4	253	c.218C>T	c.(217-219)ACG>ATG	p.T73M		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	73										large_intestine(1)|ovary(1)	2						GTGAAAATGACGCAACAAATG	0.388000													28	161					0	0	0.008361	0	0	
PTPRM	5797	broad.mit.edu	37	18	8113650	8113650	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr18:8113650C>T	uc002knn.3	+	12	2526	c.2023C>T	c.(2023-2025)CCT>TCT	p.P675S	PTPRM_uc010dkv.2_Missense_Mutation_p.P675S|PTPRM_uc010wzl.1_Missense_Mutation_p.P462S	NM_002845	NP_002836	P28827	PTPRM_HUMAN	protein tyrosine phosphatase, receptor type, M	675	Extracellular (Potential).				homophilic cell adhesion|negative regulation of angiogenesis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|response to drug|retina layer formation|retinal ganglion cell axon guidance	cell-cell adherens junction|integral to plasma membrane|lamellipodium|perinuclear region of cytoplasm	cadherin binding|transmembrane receptor protein tyrosine phosphatase activity			lung(3)|ovary(2)|central_nervous_system(1)	6		Colorectal(10;0.234)				AGCTGCGCAGCCTTTTACAAT	0.443000													49	174					0	0	0.014410	0	0	
SMAD4	4089	broad.mit.edu	37	18	48591919	48591919	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr18:48591919G>A	uc010xdp.1	+	9	1620	c.1082G>A	c.(1081-1083)CGC>CAC	p.R361H	SMAD4_uc002lfb.3_Missense_Mutation_p.R206H	NM_005359	NP_005350	Q13485	SMAD4_HUMAN	mothers against decapentaplegic homolog 4	361	MH2.		R -> H (in a colorectal cancer sample; somatic mutation).|R -> C (in JPS).		BMP signaling pathway|negative regulation of cell growth|negative regulation of protein catabolic process|negative regulation of transcription, DNA-dependent|palate development|positive regulation of epithelial to mesenchymal transition|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of transforming growth factor-beta2 production|response to hypoxia|response to transforming growth factor beta stimulus|SMAD protein complex assembly|SMAD protein signal transduction|transforming growth factor beta receptor signaling pathway	activin responsive factor complex|centrosome|cytosol	I-SMAD binding|protein homodimerization activity|R-SMAD binding|transcription regulatory region DNA binding|transforming growth factor beta receptor, common-partner cytoplasmic mediator activity	p.0?(35)|p.R361C(6)|p.R361H(3)|p.?(2)|p.R361S(1)		pancreas(170)|large_intestine(108)|thyroid(19)|lung(11)|small_intestine(9)|upper_aerodigestive_tract(8)|biliary_tract(8)|ovary(7)|breast(6)|stomach(5)|oesophagus(3)|testis(2)|central_nervous_system(2)|haematopoietic_and_lymphoid_tissue(2)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|kidney(1)|urinary_tract(1)|vulva(1)|skin(1)|NS(1)	369		all_cancers(7;0.203)|Colorectal(6;0.003)|all_epithelial(6;0.00336)		Colorectal(16;0.0032)|COAD - Colon adenocarcinoma(17;0.0708)|READ - Rectum adenocarcinoma(32;0.155)		GGAGGAGATCGCTTTTGTTTG	0.413000									Juvenile_Polyposis|Hereditary_Hemorrhagic_Telangiectasia				15	99					0	0	0.020292	0	0	
ZNF358	140467	broad.mit.edu	37	19	7584405	7584405	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:7584405G>A	uc002mgn.2	+	2	447	c.277G>A	c.(277-279)GAC>AAC	p.D93N		NM_018083	NP_060553	Q9NW07	ZN358_HUMAN	zinc finger protein 358	93					embryonic forelimb morphogenesis|neural tube development|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						TTCGAGTTTCGACCTCGATCC	0.607000													40	133					0	0	0.011902	0	0	
MUC16	94025	broad.mit.edu	37	19	8959694	8959694	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:8959694G>A	uc002mkp.2	-	84	43642	c.43438C>T	c.(43438-43440)CGG>TGG	p.R14480W	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.R1280W|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	22125	Cytoplasmic (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCTTCCGCCGGCGGGTGGTC	0.582000													9	25					0	0	0.006214	0	0	
MUC16	94025	broad.mit.edu	37	19	9089844	9089844	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:9089844C>T	uc002mkp.2	-	1	2175	c.1971G>A	c.(1969-1971)AAG>AAA	p.K657K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	657	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGCAGCCGTCTTGCTCACTG	0.532000													15	196					0	0	0.014323	0	0	
RAB3A	5864	broad.mit.edu	37	19	18311172	18311172	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:18311172G>A	uc002nie.2	-	3	481	c.312C>T	c.(310-312)ATC>ATT	p.I104I		NM_002866	NP_002857	P20336	RAB3A_HUMAN	RAB3A, member RAS oncogene family	104					glutamate secretion|protein transport|small GTPase mediated signal transduction	clathrin sculpted acetylcholine transport vesicle membrane|clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|clathrin sculpted glutamate transport vesicle membrane|clathrin sculpted monoamine transport vesicle membrane|plasma membrane|synaptic vesicle	GTP binding|GTPase activity				0						CCTCGTTGGTGATGTCATACA	0.433000													9	162					0	0	0.004482	0	0	
HAPLN4	404037	broad.mit.edu	37	19	19369476	19369476	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:19369476G>A	uc002nmb.2	-	4	728	c.673C>T	c.(673-675)CGG>TGG	p.R225W	HAPLN4_uc002nmc.2_Missense_Mutation_p.R225W	NM_023002	NP_075378	Q86UW8	HPLN4_HUMAN	hyaluronan and proteoglycan link protein 4	225	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			pancreas(1)	1			Epithelial(12;0.00575)			TCCCGGGGCCGGTTCACGGGG	0.721000													5	10					0	0	0.001984	0	0	
CILP2	148113	broad.mit.edu	37	19	19656451	19656451	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:19656451C>T	uc002nmv.3	+	8	3182	c.3097C>T	c.(3097-3099)CGG>TGG	p.R1033W	CILP2_uc002nmw.3_Missense_Mutation_p.R1039W	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	1033						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TTACCTGACCCGGCACCCCCC	0.667000													6	12					0	0	0.001168	0	0	
WDR62	284403	broad.mit.edu	37	19	36558857	36558857	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:36558857G>C	uc002odc.2	+	7	918	c.827G>C	c.(826-828)GGC>GCC	p.G276A	WDR62_uc002odd.2_Missense_Mutation_p.G276A|WDR62_uc002odb.2_Missense_Mutation_p.G276A	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	276					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			TCCTACTCGGGCCTCCTCTGC	0.597000													11	47					0	0	0.010729	0	0	
CYP2A13	1553	broad.mit.edu	37	19	41600209	41600209	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:41600209G>A	uc002opt.2	+	7	1042	c.1033G>A	c.(1033-1035)GAC>AAC	p.D345N		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	345					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	CAAGTTTGAGGACCGGGCCAA	0.557000													35	100					0	0	0.015359	0	0	
SIGLEC14	100049587	broad.mit.edu	37	19	52149117	52149117	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:52149117G>A	uc002pxf.3	-	3	738	c.618C>T	c.(616-618)GAC>GAT	p.D206D		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	206	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		TGGTGCCATGGTCCTCGGGCC	0.637000													4	77					0	0	0.009096	0	0	
ZNF534	147658	broad.mit.edu	37	19	52942411	52942411	+	Silent	SNP	G	A	A	rs113700997		TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:52942411G>A	uc002pzk.2	+	4	1798	c.1737G>A	c.(1735-1737)GCG>GCA	p.A579A	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Silent_p.A566A	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	579	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACACCTTGCGCGACATAGGA	0.443000													3	23					0	0	0.009096	0	0	
NLRP4	147945	broad.mit.edu	37	19	56369621	56369621	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr19:56369621C>T	uc002qmd.3	+	3	1284	c.862C>T	c.(862-864)CGG>TGG	p.R288W	NLRP4_uc002qmf.2_Missense_Mutation_p.R213W|NLRP4_uc010etf.2_Missense_Mutation_p.R119W	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	288	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GAAGGAGCTCCGGGATCAGGT	0.547000													28	153					0	0	0.007291	0	0	
Unknown	0	broad.mit.edu	37	2	95558407	95558407	+	RNA	SNP	A	G	G	rs5006801		TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr2:95558407A>G	uc002stv.1	-	6		c.594T>C								Homo sapiens cDNA FLJ44118 fis, clone TESTI4047069.																		CTCAAAACAGAATGCATCTGG	0.463000													3	26					0	0	0.001168	0	0	
HECW2	57520	broad.mit.edu	37	2	197184379	197184379	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr2:197184379C>T	uc002utm.1	-	9	1418	c.1235G>A	c.(1234-1236)CGT>CAT	p.R412H	HECW2_uc002utl.1_Missense_Mutation_p.R56H	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	412					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TGAATCCTGACGTCCTCTGGG	0.527000													4	144					0	0	0.009096	0	0	
NIF3L1	60491	broad.mit.edu	37	2	201756971	201756971	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr2:201756971G>A	uc002uwm.2	+	2	396	c.305G>A	c.(304-306)CGC>CAC	p.R102H	PPIL3_uc002uwk.2_5'Flank|NIF3L1_uc002uwl.2_Missense_Mutation_p.R75H|NIF3L1_uc002uwn.2_Missense_Mutation_p.R75H|NIF3L1_uc002uwo.2_Missense_Mutation_p.R102H|NIF3L1_uc002uwp.2_Missense_Mutation_p.R102H|NIF3L1_uc002uwq.2_Missense_Mutation_p.R102H	NM_001136039	NP_001129511	Q9GZT8	NIF3L_HUMAN	NIF3 NGG1 interacting factor 3-like 1 isoform 1	102					positive regulation of transcription, DNA-dependent		transcription factor binding			skin(1)	1						CCCATGAAGCGCATAACCTGG	0.547000													5	206					0	0	0.014758	0	0	
TMC2	117532	broad.mit.edu	37	20	2597930	2597930	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr20:2597930C>T	uc002wgf.1	+	16	2168	c.2153C>T	c.(2152-2154)CCA>CTA	p.P718L	TMC2_uc002wgg.1_Missense_Mutation_p.P702L	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	718	Extracellular (Potential).					integral to membrane				ovary(3)	3						ATGTCCCTCCCACCCTCCTTT	0.622000													5	82					0	0	0.014758	0	0	
C20orf29	55317	broad.mit.edu	37	20	3804851	3804851	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr20:3804851C>T	uc002wjs.1	+	3	688	c.510C>T	c.(508-510)CTC>CTT	p.L170L	C20orf29_uc002wjt.2_Silent_p.L94L|C20orf29_uc002wju.1_Silent_p.L170L	NM_018347	NP_060817	Q9NUS5	CT029_HUMAN	hypothetical protein LOC55317	170					double-strand break repair via homologous recombination		protein binding			skin(1)	1						AGGGCATCCTCACCCGCTTCC	0.637000													11	40					0	0	0.010729	0	0	
TPTE	7179	broad.mit.edu	37	21	10951401	10951401	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr21:10951401A>T	uc002yip.1	-	10	679	c.311T>A	c.(310-312)CTG>CAG	p.L104Q	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.L86Q|TPTE_uc002yir.1_Missense_Mutation_p.L66Q|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	104	Helical; (Potential).				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGTGACATCCAGTAAGACCAG	0.318000													12	171					0	0	0.013537	0	0	
PCNT	5116	broad.mit.edu	37	21	47786730	47786730	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr21:47786730C>T	uc002zji.3	+	15	2948	c.2841C>T	c.(2839-2841)GCC>GCT	p.A947A	PCNT_uc002zjj.2_Silent_p.A829A	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	947					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					CACGTGTGGCCGAACTGCAGA	0.597000													21	82					0	0	0.021523	0	0	
GRM7	2917	broad.mit.edu	37	3	7494338	7494338	+	Nonsense_Mutation	SNP	A	T	T	rs144288627		TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr3:7494338A>T	uc003bqm.2	+	6	1493	c.1219A>T	c.(1219-1221)AAA>TAA	p.K407*	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Nonsense_Mutation_p.K407*|GRM7_uc003bql.2_Nonsense_Mutation_p.K407*|GRM7_uc003bqn.1_5'UTR|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	407	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GCAGGAGGGTAAAGTCCAGTT	0.408000													24	75					0	0	0.004656	0	0	
DNAH1	25981	broad.mit.edu	37	3	52403955	52403955	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr3:52403955G>A	uc011bef.1	+	38	6319	c.6058G>A	c.(6058-6060)GAG>AAG	p.E2020K		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2020	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GCCCTTCATCGAGTGCTGGCT	0.597000													26	83					0	0	0.007291	0	0	
EPHA6	285220	broad.mit.edu	37	3	96706450	96706450	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr3:96706450G>A	uc010how.1	+	3	770	c.727G>A	c.(727-729)GAC>AAC	p.D243N	EPHA6_uc003drp.1_Missense_Mutation_p.D243N	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	148	Ephrin-binding.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TACAAAGATCGACACAATTGC	0.413000													68	347					0	0	0.014410	0	0	
CEP63	80254	broad.mit.edu	37	3	134256003	134256003	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr3:134256003C>T	uc003eqo.1	+	7	897	c.448C>T	c.(448-450)CGT>TGT	p.R150C	CEP63_uc003eql.1_Missense_Mutation_p.R150C|CEP63_uc003eqm.2_Missense_Mutation_p.R150C|CEP63_uc003eqn.1_Missense_Mutation_p.R150C	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a	150	Potential.				cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						TCAGGAATTCCGTCAGAAATC	0.458000													32	129					0	0	0.009535	0	0	
IGSF10	285313	broad.mit.edu	37	3	151171512	151171512	+	Missense_Mutation	SNP	A	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr3:151171512A>T	uc011bod.1	-	3	375	c.375T>A	c.(373-375)TTT>TTA	p.F125L		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	125	LRR 3.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGAGGCCATAAAAAGTATCTT	0.353000													64	306					0	0	0.014410	0	0	
P2RY1	5028	broad.mit.edu	37	3	152554282	152554282	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr3:152554282C>T	uc003ezq.2	+	1	1547	c.711C>T	c.(709-711)TAC>TAT	p.Y237Y		NM_002563	NP_002554	P47900	P2RY1_HUMAN	purinergic receptor P2Y1	237	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			lung(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0628)|Lung(72;0.11)			TGGGCTGTTACGGATTAATTG	0.453000													24	135					0	0	0.014323	0	0	
DRD5	1816	broad.mit.edu	37	4	9784478	9784478	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:9784478C>A	uc003gmb.3	+	1	1221	c.825C>A	c.(823-825)AGC>AGA	p.S275R		NM_000798	NP_000789	P21918	DRD5_HUMAN	dopamine receptor D5	275	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|cellular calcium ion homeostasis|negative regulation of NAD(P)H oxidase activity|reactive oxygen species metabolic process|synaptic transmission, dopaminergic	integral to plasma membrane				skin(1)	1					Apomorphine(DB00714)|Carphenazine(DB01038)|Fenoldopam(DB00800)|Zuclopenthixol(DB01624)	GCCGGAGCAGCGCAGCCTGCG	0.637000													4	70					2.56e-06	2.74432e-06	0.009096	1	0	
SLIT2	9353	broad.mit.edu	37	4	20543118	20543118	+	Silent	SNP	T	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:20543118T>C	uc003gpr.1	+	20	2223	c.2019T>C	c.(2017-2019)GCT>GCC	p.A673A	SLIT2_uc003gps.1_Silent_p.A665A	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	673	LRRCT 3.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GCTACCTGGCTTGGTTGGGAG	0.458000													3	83					0	0	0.004672	0	0	
SLIT2	9353	broad.mit.edu	37	4	20568884	20568884	+	Splice_Site	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:20568884G>A	uc003gpr.1	+	27	2930	c.2726_splice	c.e27-1	p.G909_splice	SLIT2_uc003gps.1_Splice_Site_p.G901_splice	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor						apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TTAATTTTCAGGTCCTGTGGA	0.323000													6	316					0	0	0.001984	0	0	
RBM47	54502	broad.mit.edu	37	4	40438457	40438457	+	Splice_Site	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:40438457C>T	uc003gvc.2	-	5	2040	c.1330_splice	c.e5+1	p.V444_splice	RBM47_uc003gvd.2_Intron|RBM47_uc003gve.2_Splice_Site|RBM47_uc011bys.1_Splice_Site_p.V406_splice	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a							nucleus	nucleotide binding|RNA binding			breast(3)	3						TTCATACTGACCTGTACCAGG	0.453000													33	196					0	0	0.015359	0	0	
RASSF6	166824	broad.mit.edu	37	4	74447534	74447534	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:74447534C>T	uc003hhd.1	-	8	940	c.817G>A	c.(817-819)GAA>AAA	p.E273K	RASSF6_uc003hhc.1_Missense_Mutation_p.E241K|RASSF6_uc010iik.1_Missense_Mutation_p.E207K|RASSF6_uc010iil.1_Missense_Mutation_p.E229K	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	273	Ras-associating.				apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			GCTTTCTTACCTCCTGTTGCA	0.383000													13	83					0	0	0.006122	0	0	
SHROOM3	57619	broad.mit.edu	37	4	77677626	77677626	+	Silent	SNP	A	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:77677626A>T	uc011cbx.1	+	8	5687	c.4734A>T	c.(4732-4734)ACA>ACT	p.T1578T	SHROOM3_uc003hkg.2_Silent_p.T1356T	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1578					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			CTAAAGTGACAATTGCAAGGG	0.333000													7	43					0	0	0.006214	0	0	
GRID2	2895	broad.mit.edu	37	4	94436497	94436497	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:94436497C>T	uc011cdt.1	+	13	2386	c.2128C>T	c.(2128-2130)CGG>TGG	p.R710W	GRID2_uc011cdu.1_Missense_Mutation_p.R615W	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	710	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CCAAATGTGGCGGATGATCAA	0.473000													17	112					0	0	0.004990	0	0	
FSTL5	56884	broad.mit.edu	37	4	162459360	162459360	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr4:162459360C>G	uc003iqh.2	-	10	1706	c.1270G>C	c.(1270-1272)GAC>CAC	p.D424H	FSTL5_uc003iqi.2_Missense_Mutation_p.D423H|FSTL5_uc010iqv.2_Missense_Mutation_p.D423H	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	424	Ig-like 2.					extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		GAAGAGATGTCTTCATCCACT	0.418000													32	508					0	0	0.015359	0	0	
ERBB2IP	55914	broad.mit.edu	37	5	65288672	65288672	+	Silent	SNP	T	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr5:65288672T>C	uc003juk.1	+	3	434	c.126T>C	c.(124-126)TTT>TTC	p.F42F	ERBB2IP_uc003juh.1_Silent_p.F42F|ERBB2IP_uc003jui.1_Silent_p.F42F|ERBB2IP_uc003juj.1_Silent_p.F42F|ERBB2IP_uc011cqx.1_Silent_p.F42F|ERBB2IP_uc011cqy.1_Silent_p.F42F|ERBB2IP_uc011cqz.1_Silent_p.F42F|ERBB2IP_uc010iwx.1_Silent_p.F42F|ERBB2IP_uc003jul.1_Silent_p.F42F	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	42	LRR 1.				basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		AAGAGATTTTTACTTTTGAAA	0.383000													33	112					0	0	0.012213	0	0	
ERBB2IP	55914	broad.mit.edu	37	5	65342364	65342364	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr5:65342364G>C	uc003juk.1	+	18	2094	c.1786G>C	c.(1786-1788)GAG>CAG	p.E596Q	ERBB2IP_uc003juh.1_Missense_Mutation_p.E592Q|ERBB2IP_uc003jui.1_Missense_Mutation_p.E596Q|ERBB2IP_uc003juj.1_Missense_Mutation_p.E596Q|ERBB2IP_uc011cqx.1_Missense_Mutation_p.E596Q|ERBB2IP_uc011cqy.1_Missense_Mutation_p.E596Q|ERBB2IP_uc011cqz.1_Intron|ERBB2IP_uc010iwx.1_Missense_Mutation_p.E592Q|ERBB2IP_uc003jul.1_Missense_Mutation_p.E592Q	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	596					basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		TGATGTTTTTGAGGTATGATT	0.323000													13	303					0	0	0.013537	0	0	
ZNF366	167465	broad.mit.edu	37	5	71757272	71757272	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr5:71757272C>G	uc003kce.1	-	2	238	c.52G>C	c.(52-54)GCT>CCT	p.A18P		NM_152625	NP_689838	Q8N895	ZN366_HUMAN	zinc finger protein 366	18					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Lung NSC(167;0.0247)|Ovarian(174;0.0908)|Prostate(461;0.155)		OV - Ovarian serous cystadenocarcinoma(47;2.51e-53)		TTCTTCACAGCCAAGTCGAAA	0.512000													5	163					0	0	0.001168	0	0	
CMYA5	202333	broad.mit.edu	37	5	79026269	79026269	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr5:79026269G>T	uc003kgc.2	+	2	1753	c.1681G>T	c.(1681-1683)GAG>TAG	p.E561*		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	561	Glu-rich.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CAAAGAAGAAGAGCTTATTCT	0.438000													8	428					2.17888e-05	2.26333e-05	0.006214	1	0	
DOCK2	1794	broad.mit.edu	37	5	169129410	169129410	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr5:169129410G>A	uc003maf.2	+	14	1442	c.1362G>A	c.(1360-1362)GCG>GCA	p.A454A	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_5'Flank|DOCK2_uc010jjl.1_Silent_p.A5A	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	454	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTGTGTGCGCGGAGGATGGCA	0.512000											OREG0017017	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	123					0	0	0.009096	0	0	
SLC22A23	63027	broad.mit.edu	37	6	3287186	3287186	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr6:3287186C>T	uc003mvm.3	-	7	1453	c.1453G>A	c.(1453-1455)GTG>ATG	p.V485M	uc003mvi.1_RNA|SLC22A23_uc003mvn.3_Missense_Mutation_p.V204M|SLC22A23_uc003mvo.3_Missense_Mutation_p.V204M|SLC22A23_uc003mvp.1_RNA|SLC22A23_uc010jnn.2_Missense_Mutation_p.V485M|SLC22A23_uc003mvq.1_RNA	NM_015482	NP_056297	A1A5C7	S22AN_HUMAN	solute carrier family 22, member 23 isoform a	485	Helical; (Potential).				ion transport	integral to membrane	transmembrane transporter activity			ovary(1)	1	Ovarian(93;0.0493)	all_hematologic(90;0.0905)				CGGACCACCACGCACATGGCC	0.632000													6	23					0	0	0.003080	0	0	
KIAA0319	9856	broad.mit.edu	37	6	24596282	24596282	+	Missense_Mutation	SNP	G	A	A	rs141114963		TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr6:24596282G>A	uc011djo.1	-	3	857	c.620C>T	c.(619-621)GCG>GTG	p.A207V	KIAA0319_uc011djp.1_Missense_Mutation_p.A162V|KIAA0319_uc003neh.1_Missense_Mutation_p.A207V|KIAA0319_uc011djq.1_Missense_Mutation_p.A198V|KIAA0319_uc011djr.1_Missense_Mutation_p.A207V	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	207	Extracellular (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						CTGCGTCTCCGCTGGCACCGC	0.622000													8	63					0	0	0.003080	0	0	
SCUBE3	222663	broad.mit.edu	37	6	35205712	35205712	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr6:35205712G>A	uc003okf.1	+	7	752	c.746G>A	c.(745-747)AGT>AAT	p.S249N	SCUBE3_uc003okg.1_Missense_Mutation_p.S248N|SCUBE3_uc003okh.1_Missense_Mutation_p.S136N	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	249	EGF-like 6.				protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						GGCTGTGACAGTAAGTGCCAT	0.557000													5	196					0	0	0.014758	0	0	
TREML4	285852	broad.mit.edu	37	6	41196676	41196676	+	Missense_Mutation	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr6:41196676G>A	uc003oqc.2	+	2	392	c.288G>A	c.(286-288)ATG>ATA	p.M96I	TREML4_uc003oqd.2_RNA	NM_198153	NP_937796	Q6UXN2	TRML4_HUMAN	triggering receptor expressed on myeloid	96	Ig-like V-type.					extracellular region				breast(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					ACATCACCATGATTCAGCTGA	0.468000													15	120					0	0	0.004990	0	0	
LMBRD1	55788	broad.mit.edu	37	6	70459254	70459254	+	Missense_Mutation	SNP	C	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr6:70459254C>A	uc003pfa.2	-	5	567	c.452G>T	c.(451-453)TGT>TTT	p.C151F	LMBRD1_uc003pez.2_Missense_Mutation_p.C78F|LMBRD1_uc010kal.2_Missense_Mutation_p.C78F|LMBRD1_uc003pfb.2_Intron	NM_018368	NP_060838	Q9NUN5	LMBD1_HUMAN	liver regeneration p-53 related protein	151	Helical; Name=4; (Potential).				interspecies interaction between organisms|transport	integral to membrane|lysosomal membrane	cobalamin binding			ovary(1)	1						AAGCAGTGCACAAATCACAAC	0.284000													12	48					1.49906e-05	1.56933e-05	0.020292	1	0	
UTRN	7402	broad.mit.edu	37	6	145161925	145161925	+	Silent	SNP	G	A	A			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr6:145161925G>A	uc003qkt.2	+	72	10319	c.10227G>A	c.(10225-10227)ACG>ACA	p.T3409T		NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin	3409					muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CGGATCTCACGGAGGTCATGG	0.507000													4	156					0	0	0.009096	0	0	
ITGB8	3696	broad.mit.edu	37	7	20421359	20421359	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr7:20421359G>C	uc003suu.2	+	6	1516	c.811G>C	c.(811-813)GGA>CGA	p.G271R	ITGB8_uc011jyh.1_Missense_Mutation_p.G136R|ITGB8_uc003sut.2_Missense_Mutation_p.G271R	NM_002214	NP_002205	P26012	ITB8_HUMAN	integrin, beta 8 precursor	271	VWFA.|Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|placenta blood vessel development	integrin complex	protein binding|receptor activity			skin(3)	3						GAGTCATATCGGATGGCGAAA	0.398000													14	62					0	0	0.004007	0	0	
GRM3	2913	broad.mit.edu	37	7	86416011	86416011	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr7:86416011C>T	uc003uid.2	+	3	2002	c.903C>T	c.(901-903)GAC>GAT	p.D301D	GRM3_uc010lef.2_Silent_p.D299D|GRM3_uc010leg.2_Silent_p.D173D|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	301	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGGCCAGCGACGGCTGGGGCG	0.692000													10	37					0	0	0.013537	0	0	
LRRC4	64101	broad.mit.edu	37	7	127670603	127670603	+	Missense_Mutation	SNP	G	C	C			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr7:127670603G>C	uc003vmk.2	-	2	228	c.91C>G	c.(91-93)CTG>GTG	p.L31V	SND1_uc003vmi.2_Intron|SND1_uc010lle.2_Intron	NM_022143	NP_071426	Q9HBW1	LRRC4_HUMAN	leucine rich repeat containing 4 precursor	31						cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4				Lung(243;0.124)		GCTGCACACAGAATCCACACT	0.622000													22	89					0	0	0.021523	0	0	
HR	55806	broad.mit.edu	37	8	21976480	21976480	+	Missense_Mutation	SNP	G	A	A	rs148092652		TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr8:21976480G>A	uc003xas.2	-	16	3861	c.3196C>T	c.(3196-3198)CGC>TGC	p.R1066C	HR_uc003xat.2_Missense_Mutation_p.R1066C	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	1066	JmjC.						DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		AGAAAGCGGCGGATGCGCTGG	0.682000													3	40					0	0	0.009096	0	0	
TG	7038	broad.mit.edu	37	8	133906030	133906030	+	Missense_Mutation	SNP	C	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr8:133906030C>G	uc003ytw.2	+	11	2898	c.2857C>G	c.(2857-2859)CTG>GTG	p.L953V		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	953	Thyroglobulin type-1 8.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TCGGTTCCCTCTGGGGGAGAG	0.582000													4	186					0	0	0.009096	0	0	
VPS13A	23230	broad.mit.edu	37	9	79853016	79853016	+	Missense_Mutation	SNP	T	G	G			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr9:79853016T>G	uc004akr.2	+	18	1954	c.1694T>G	c.(1693-1695)TTC>TGC	p.F565C	VPS13A_uc004akp.3_Missense_Mutation_p.F565C|VPS13A_uc004akq.3_Missense_Mutation_p.F565C|VPS13A_uc004aks.2_Missense_Mutation_p.F565C	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	565	TPR 3.		F -> L.		Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						ATGTCACTTTTCCAAATTACA	0.333000													5	211					0	0	0.001984	0	0	
NR5A1	2516	broad.mit.edu	37	9	127265456	127265456	+	Missense_Mutation	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chr9:127265456C>T	uc004boo.1	-	3	333	c.146G>A	c.(145-147)TGC>TAC	p.C49Y		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	49	NR C4-type.|Nuclear receptor.				cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						GCTCTCGGTGCACGTGTAGTG	0.647000													3	7					0	0	0.004672	0	0	
TNMD	64102	broad.mit.edu	37	X	99854068	99854068	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chrX:99854068C>T	uc004efy.3	+	6	859	c.633C>T	c.(631-633)AAC>AAT	p.N211N	TNMD_uc004efz.2_3'UTR	NM_022144	NP_071427	Q9H2S6	TNMD_HUMAN	tenomodulin	211	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						TTCCTGCCAACGAAAAAAAAG	0.423000													9	39					0	0	0.004482	0	0	
ZIC3	7547	broad.mit.edu	37	X	136651179	136651179	+	Silent	SNP	C	T	T			TCGA-CG-5719-01A-11D-1600-08	TCGA-CG-5719-10A-01D-1600-08									Somatic	Phase_I	Capture				Illumina GAIIx	06d82ba1-5010-48c8-a0e8-36fc009f9b70	1e859428-ed63-4752-a140-7587e742a171	g.chrX:136651179C>T	uc004fak.2	+	2	1684	c.1179C>T	c.(1177-1179)TGC>TGT	p.C393C		NM_003413	NP_003404	O60481	ZIC3_HUMAN	zinc finger protein of the cerebellum 3	393	C2H2-type 5.				cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GCAAAGTGTGCGACAAGTCCT	0.532000													38	248					0	0	0.019004	0	0	
