Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MTHFR	4524	broad.mit.edu	37	1	11856448	11856448	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr1:11856448T>G	uc001atc.1	-	5	779	c.595A>C	c.(595-597)AAA>CAA	p.K199Q	MTHFR_uc001atb.1_Missense_Mutation_p.K222Q	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	199					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	GGGTGGCCTTTGGGGTAACCT	0.562000													17	174	---	---	---	---	0	0	0.002852	0	0
EBNA1BP2	10969	broad.mit.edu	37	1	43632576	43632576	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr1:43632576G>T	uc001cin.2	-	7	825	c.628C>A	c.(628-630)CTG>ATG	p.L210M	EBNA1BP2_uc001cio.2_Missense_Mutation_p.L265M|EBNA1BP2_uc001cim.2_Missense_Mutation_p.L105M|EBNA1BP2_uc010ojx.1_Missense_Mutation_p.L265M	NM_006824	NP_006815	Q99848	EBP2_HUMAN	EBNA1 binding protein 2 isoform 2	210					ribosome biogenesis	membrane fraction|nucleolus	protein binding				0	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGGAAATCCAGTTTATCAGAG	0.443000													12	92	---	---	---	---	2.32078e-09	3.73344e-09	0.003163	1	0
LPPR4	9890	broad.mit.edu	37	1	99771893	99771893	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr1:99771893C>G	uc001dse.2	+	7	1725	c.1619C>G	c.(1618-1620)ACT>AGT	p.T540S	LPPR4_uc010oue.1_Missense_Mutation_p.T482S	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	540							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		CCTGAGGAGACTCAGGAAAAC	0.557000													3	41	---	---	---	---	0	0	0.004672	0	0
PRSS38	339501	broad.mit.edu	37	1	228033757	228033757	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr1:228033757G>A	uc001hrh.2	+	5	829	c.829G>A	c.(829-831)GTG>ATG	p.V277M		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	277	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						GTACCCTGGAGTGTATGCCAG	0.547000													7	71	---	---	---	---	0	0	0.003080	0	0
HRAS	3265	broad.mit.edu	37	11	533875	533875	+	Missense_Mutation	SNP	G	T	T	rs28933406		TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr11:533875G>T	uc001lpv.2	-	3	369	c.181C>A	c.(181-183)CAG>AAG	p.Q61K	HRAS_uc010qvw.1_Missense_Mutation_p.Q61K|HRAS_uc010qvx.1_Missense_Mutation_p.Q61K|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	61	GTP.		Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).	Q->V: Strongly increased transformation of cultured cell lines.|Q->I: Moderately increased transformation of cultured cell lines.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(112)|p.Q61L(91)|p.Q61K(39)|p.Q61H(20)|p.Q61P(3)|p.Q61Q(1)|p.Q61E(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	TACTCCTCCTGGCCGGCGGTA	0.597000		6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			49	116	---	---	---	---	5.57489e-27	9.37596e-27	0.003610	1	0
SLC22A6	9356	broad.mit.edu	37	11	62747391	62747391	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr11:62747391A>C	uc001nwk.2	-	7	1374	c.1067T>G	c.(1066-1068)CTG>CGG	p.L356R	SLC22A6_uc001nwl.2_Missense_Mutation_p.L356R|SLC22A6_uc001nwj.2_Missense_Mutation_p.L356R|SLC22A6_uc001nwm.2_Missense_Mutation_p.L356R	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	356	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						GTCCATGACCAGCCCATAGTA	0.413000													5	117	---	---	---	---	0	0	0.001168	0	0
UBTFL1	642623	broad.mit.edu	37	11	89819843	89819843	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr11:89819843G>A	uc010rub.1	+	1	726	c.726G>A	c.(724-726)ATG>ATA	p.M242I		NM_001143975	NP_001137447	P0CB47	UBFL1_HUMAN	upstream binding transcription factor, RNA	242	HMG box 2.				multicellular organismal development	cytoplasm|nucleus	DNA binding				0						GTAAAGAGATGCAACATTTGT	0.483000													5	58	---	---	---	---	0	0	0.001168	0	0
DENND5B	160518	broad.mit.edu	37	12	31605085	31605085	+	Missense_Mutation	SNP	A	C	C			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr12:31605085A>C	uc001rki.1	-	5	1604	c.1418T>G	c.(1417-1419)CTC>CGC	p.L473R	DENND5B_uc001rkh.1_Missense_Mutation_p.L508R|DENND5B_uc009zjq.1_Intron|DENND5B_uc001rkj.2_Missense_Mutation_p.L495R|DENND5B_uc001rkk.1_Missense_Mutation_p.L395R	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	473						integral to membrane				ovary(1)|central_nervous_system(1)	2						AGAAGCAGAGAGGTCCATTTT	0.468000													9	234	---	---	---	---	0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	106691922	106691922	+	RNA	SNP	C	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr14:106691922C>T	uc010tyt.1	-	754		c.20441G>A								Parts of antibodies, mostly variable regions.												0						TCAGGGACCCCCCAGGCTTGA	0.587000													5	96	---	---	---	---	0	0	0.000602	0	0
LOC645752	645752	broad.mit.edu	37	15	78211648	78211648	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr15:78211648A>G	uc010bky.2	-	11	883	c.119T>C	c.(118-120)CTA>CCA	p.L40P		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CGCCAGGGATAGGGGCTCAGC	0.522000													4	84	---	---	---	---	0	0	0.000248	0	0
MFSD2B	388931	broad.mit.edu	37	2	24245335	24245335	+	Silent	SNP	A	G	G			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr2:24245335A>G	uc002reo.1	+	9	941	c.927A>G	c.(925-927)ACA>ACG	p.T309T		NM_001080473	NP_001073942	A6NFX1	MFS2B_HUMAN	major facilitator superfamily domain containing	309					transport	integral to membrane				ovary(2)	2						TGTTCTGTACACATGCCTCCC	0.607000													14	20	---	---	---	---	0	0	0.004007	0	0
TTC7A	57217	broad.mit.edu	37	2	47222329	47222329	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr2:47222329C>A	uc002rvo.2	+	8	1424	c.1056C>A	c.(1054-1056)AGC>AGA	p.S352R	TTC7A_uc002rvm.2_Missense_Mutation_p.S318R|TTC7A_uc002rvn.1_Missense_Mutation_p.S233R|TTC7A_uc010fbb.2_Missense_Mutation_p.S352R|TTC7A_uc010fbc.2_5'UTR|TTC7A_uc002rvp.2_Missense_Mutation_p.S233R|TTC7A_uc002rvq.2_Missense_Mutation_p.S92R|TTC7A_uc002rvr.2_5'UTR	NM_020458	NP_065191	Q9ULT0	TTC7A_HUMAN	tetratricopeptide repeat domain 7A	352							binding			breast(1)|skin(1)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	Lung(47;0.0792)|LUSC - Lung squamous cell carcinoma(58;0.114)			TCCTCATCAGCGAATCCATGG	0.607000													3	55	---	---	---	---	0.004672	0.00617371	0.004672	1	0
LRP1B	53353	broad.mit.edu	37	2	141259265	141259265	+	Silent	SNP	G	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr2:141259265G>T	uc002tvj.1	-	55	9813	c.8841C>A	c.(8839-8841)GTC>GTA	p.V2947V		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2947	Extracellular (Potential).|EGF-like 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CCTTATAACTGACCGGAAGGT	0.353000										TSP Lung(27;0.18)			3	22	---	---	---	---	6.4e-05	9.472e-05	0.004672	1	0
FRG1B	284802	broad.mit.edu	37	20	29625895	29625895	+	Missense_Mutation	SNP	G	A	A	rs76435412	by1000genomes	TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr20:29625895G>A	uc010ztl.1	+	2	81	c.49G>A	c.(49-51)GGA>AGA	p.G17R	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATCTGGCTATGGAAAATATCT	0.343000													10	38	---	---	---	---	0	0	0.001368	0	0
RRP9	9136	broad.mit.edu	37	3	51969488	51969488	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr3:51969488C>T	uc003dbw.1	-	10	880	c.841G>A	c.(841-843)GGA>AGA	p.G281R		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	281	WD 4.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		TCCTGGTGTCCGAAGCTAGAG	0.627000													11	33	---	---	---	---	0	0	0.006122	0	0
NDST3	9348	broad.mit.edu	37	4	118975673	118975673	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr4:118975673G>T	uc003ibx.2	+	2	1011	c.608G>T	c.(607-609)CGT>CTT	p.R203L	NDST3_uc011cgf.1_Missense_Mutation_p.R203L|NDST3_uc003ibw.2_Missense_Mutation_p.R203L	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	203	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CCATTGATTCGTGTGACCAAA	0.358000													3	40	---	---	---	---	0.004672	0.00617371	0.004672	1	0
ASB5	140458	broad.mit.edu	37	4	177142728	177142728	+	Silent	SNP	G	A	A	rs61748176	byFrequency	TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr4:177142728G>A	uc003iuq.1	-	4	424	c.408C>T	c.(406-408)GGC>GGT	p.G136G	ASB5_uc003iup.1_Silent_p.G83G	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	136	ANK 3.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		ACGGAGTCACGCCATCTATCG	0.448000													4	51	---	---	---	---	0	0	0.000248	0	0
CYB5R4	51167	broad.mit.edu	37	6	84618797	84618797	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr6:84618797G>A	uc003pkf.2	+	4	532	c.400G>A	c.(400-402)GCT>ACT	p.A134T		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	134					cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		CATTAAACCTGCTGTTCTGAA	0.393000													11	26	---	---	---	---	0	0	0.002450	0	0
TG	7038	broad.mit.edu	37	8	133899654	133899654	+	Silent	SNP	C	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr8:133899654C>T	uc003ytw.2	+	9	2078	c.2037C>T	c.(2035-2037)GGC>GGT	p.G679G		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	679	Thyroglobulin type-1 6.				hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		AGCCTGCTGGCTCCACCTTGT	0.557000													10	52	---	---	---	---	0	0	0.006214	0	0
ANGPTL2	23452	broad.mit.edu	37	9	129870595	129870595	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr9:129870595A>T	uc004bqr.1	-	2	916	c.416T>A	c.(415-417)ATG>AAG	p.M139K	RALGPS1_uc004bqo.1_Intron|RALGPS1_uc011mab.1_Intron|RALGPS1_uc011mac.1_Intron|RALGPS1_uc004bqq.3_Intron|ANGPTL2_uc010mxg.1_Intron	NM_012098	NP_036230	Q9UKU9	ANGL2_HUMAN	angiopoietin-like 2 precursor	139					multicellular organismal development|signal transduction	extracellular space	receptor binding				0						CAGGAGCTGCATGTAGAGCTG	0.617000													4	56	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	MT	8190	8190	+	RNA	SNP	C	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chrM:8190C>T	uc004cou.3	+	1		c.605C>T			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		AATCTGTGGAGCAAACCACAG	0.468000													9	40	---	---	---	---	0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	1	40277688	40277689	+	IGR	INS	-	TTCC	TTCC	rs139986244	by1000genomes	TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr1:40277688_40277689insTTCC								BMP8B (23155 upstream) : TRIT1 (29019 downstream)																							ataaggcttctttccttccttc	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	34255536	34255536	+	IGR	DEL	C	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr10:34255536delC								NRP1 (631530 upstream) : PARD3 (144562 downstream)																							ttccttccttccttccttcct	0.100													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	131962149	131962150	+	IGR	INS	-	ATA	ATA	rs149149753	by1000genomes	TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr12:131962149_131962150insATA								LOC116437 (264674 upstream) : SFRS8 (233485 downstream)																							tggtaatggtggtgatgatggt	0.045													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	95516588	95516610	+	IGR	DEL	GGAAGGAAGGAAGGAAAGAAGAA	-	-	rs36211516		TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr14:95516588_95516610delGGAAGGAAGGAAGGAAAGAAGAA								GSC (280089 upstream) : DICER1 (35955 downstream)																							aagaaggaagggaaggaaggaaggaaagaagaaggaaggaagg	0.063													7	40	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22646862	22646862	+	IGR	DEL	C	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr15:22646862delC								MIR1268 (133582 upstream) : GOLGA8DP (55423 downstream)																							CCCAAGTGAGCAggctggggc	0.463													7	17	---	---	---	---					
FAM174B	400451	broad.mit.edu	37	15	93198679	93198684	+	In_Frame_Del	DEL	TGGAGC	-	-	rs68056278		TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr15:93198679_93198684delTGGAGC	uc010boe.2	-	1	348_353	c.206_211delGCTCCA	c.(205-213)AGCTCCAAC>AAC	p.SS69del	FAM174B_uc002bsl.3_Intron	NM_207446	NP_997329	Q3ZCQ3	F174B_HUMAN	hypothetical protein LOC400451	69_70	Extracellular (Potential).					integral to membrane					0						CCACTGCTGTTGGAGCTGGAGCTGCC	0.578													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	47342484	47342485	+	IGR	INS	-	TTCC	TTCC			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr17:47342484_47342485insTTCC								PHOSPHO1 (34356 upstream) : ZNF652 (24084 downstream)																							CCGCTATTTAtttccttccttc	0.168													3	6	---	---	---	---					
MC5R	4161	broad.mit.edu	37	18	13825564	13825564	+	5'Flank	DEL	A	-	-	rs33981843		TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr18:13825564delA	uc010xaf.1	+							NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor						G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						cctgtctcttaaaaaaaaaaa	0.224													3	6	---	---	---	---					
LPPR3	79948	broad.mit.edu	37	19	813360	813362	+	In_Frame_Del	DEL	TCC	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr19:813360_813362delTCC	uc002lpx.1	-	8	1429_1431	c.1365_1367delGGA	c.(1363-1368)GAGGAA>GAA	p.455_456EE>E	LPPR3_uc010dru.1_In_Frame_Del_p.367_368EE>E|LPPR3_uc002lpw.1_In_Frame_Del_p.483_484EE>E|LPPR3_uc002lpy.1_In_Frame_Del_p.236_237EE>E|hsa-mir-3187|MI0014231_5'Flank	NM_024888	NP_079164	Q6T4P5	LPPR3_HUMAN	plasticity-related protein 2	455_456	Glu-rich.					integral to membrane	phosphatidate phosphatase activity				0						ctcctcctcttcctcctcctcct	0.502													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	3077984	3077991	+	IGR	DEL	AGAAAGAG	-	-	rs11277745		TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr19:3077984_3077991delAGAAAGAG								AES (15020 upstream) : GNA11 (16417 downstream)																							aaagaaagaaagaaagagagagagagag	0.000													2	4	---	---	---	---					
MIA	8190	broad.mit.edu	37	19	41281673	41281674	+	Frame_Shift_Ins	INS	-	G	G	rs139650429	by1000genomes	TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr19:41281673_41281674insG	uc002opb.3	+	2	292_293	c.144_145insG	c.(142-147)GCTGTGfs	p.A48fs	MIA_uc010xvt.1_RNA|RAB4B_uc002opc.1_RNA|RAB4B_uc002opd.1_5'Flank|RAB4B_uc002ope.1_5'Flank|EGLN2_uc010ehd.2_5'Flank	NM_006533	NP_006524	Q16674	MIA_HUMAN	melanoma inhibitory activity precursor	48_49	SH3.				cell proliferation	extracellular space	growth factor activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)	GBM - Glioblastoma multiforme(1328;0.0199)		TCTCCATGGCTGTGGCCCTTCA	0.594													9	169	---	---	---	---					
TPRX1	284355	broad.mit.edu	37	19	48306192	48306193	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr19:48306192_48306193insC	uc002php.1	-	2	146_147	c.75_76insG	c.(73-78)CGGCTCfs	p.R25fs		NM_198479	NP_940881	Q8N7U7	TPRX1_HUMAN	tetra-peptide repeat homeobox	25_26						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;3.02e-09)|all_epithelial(76;7e-07)|all_lung(116;2.48e-06)|Lung NSC(112;5.15e-06)|Ovarian(192;0.0139)|all_neural(266;0.0146)|Breast(70;0.133)		OV - Ovarian serous cystadenocarcinoma(262;0.000241)|all cancers(93;0.00036)|Epithelial(262;0.0127)|GBM - Glioblastoma multiforme(486;0.048)		TGCTGCTGGAGCCGCCGCTCCC	0.723													2	4	---	---	---	---					
DUSP2	1844	broad.mit.edu	37	2	96809973	96809973	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr2:96809973delA	uc002svk.3	-	3	736	c.650delT	c.(649-651)TTCfs	p.F217fs		NM_004418	NP_004409	Q05923	DUS2_HUMAN	dual specificity phosphatase 2	217					endoderm formation|inactivation of MAPK activity|regulation of apoptosis	nucleoplasm	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/threonine phosphatase activity			breast(1)	1		Ovarian(717;0.0228)				CTTGTAGCGGAAAAGGCCCTC	0.602													7	222	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	235453352	235453353	+	IGR	INS	-	G	G			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr2:235453352_235453353insG								ARL4C (47659 upstream) : SH3BP4 (407275 downstream)																							gaaggaaggaaggaagggaagg	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	42043712	42043712	+	IGR	DEL	A	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr20:42043712delA								PTPRT (225155 upstream) : SFRS6 (42792 downstream)																							ttcaatatggaaaaaaaaaaa	0.005													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	49467098	49467099	+	IGR	INS	-	C	C			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr22:49467098_49467099insC								FAM19A5 (319356 upstream) : C22orf34 (341077 downstream)																							cttccttccttcttccttcctc	0.074													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	3570036	3570037	+	IGR	DEL	AT	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr4:3570036_3570037delAT								LRPAP1 (35812 upstream) : ADRA2C (198038 downstream)																							GTGcacacacataagctacaca	0.139													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	14798359	14798359	+	IGR	DEL	G	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr6:14798359delG								CD83 (661213 upstream) : JARID2 (447375 downstream)																							aggaaggagaggaggaaggga	0.129													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	91131649	91131650	+	IGR	INS	-	TTCCTTCC	TTCCTTCC	rs62580715		TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr9:91131649_91131650insTTCCTTCC								SPIN1 (38029 upstream) : NXNL2 (18366 downstream)																							accaCATTTTGttccttccttc	0.010													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	116196088	116196089	+	IGR	INS	-	TCC	TCC			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr9:116196088_116196089insTCC								C9orf43 (4211 upstream) : RGS3 (10922 downstream)																							TTTCTTTTCTTTTCCTTCCTTC	0.099													2	4	---	---	---	---					
C9orf114	51490	broad.mit.edu	37	9	131591119	131591120	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chr9:131591119_131591120insT	uc004bwd.2	-	3	128_129	c.102_103insA	c.(100-105)AAATGGfs	p.K34fs	C9orf114_uc004bwe.2_Frame_Shift_Ins_p.K34fs|C9orf114_uc010mym.2_RNA	NM_016390	NP_057474	Q5T280	CI114_HUMAN	hypothetical protein LOC51490	34_35											0						AGATCCTTCCATTTTTTTTTCT	0.525													8	355	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	9909101	9909101	+	IGR	DEL	T	-	-			TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chrY:9909101delT								TTTY22 (258247 upstream) : None (None downstream)																							gattgagcagttttgaaactc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	10019375	10019376	+	IGR	INS	-	CT	CT	rs33969087		TCGA-BJ-A18Y-01A-11D-A13W-08	TCGA-BJ-A18Y-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	bf73c27d-9f97-4b97-9b19-b602466e0c09	b7e081bc-12ae-40e0-b0da-f9a5c4efea75	g.chrY:10019375_10019376insCT								TTTY22 (368521 upstream) : None (None downstream)																							tgaacacccccgtcagaagttt	0.015													3	4	---	---	---	---					
