Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16973758	16973758	+	5'Flank	SNP	G	A	A			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr1:16973758G>A	uc001azg.1	-						CROCCL1_uc001azi.1_5'Flank|MST1P2_uc009vow.2_RNA|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_5'Flank|MST1P2_uc001azm.3_5'Flank					Homo sapiens mRNA for FLJ00313 protein.												0						GTCAGGGCGCGAGTGCCAGCG	0.682000													14	71	---	---	---	---	0	0	0.000566183	0	0
TNFAIP8L2	79626	broad.mit.edu	37	1	151131411	151131411	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr1:151131411G>T	uc001ewx.2	+	2	364	c.238G>T	c.(238-240)GGC>TGC	p.G80C		NM_024575	NP_078851	Q6P589	TP8L2_HUMAN	tumor necrosis factor, alpha-induced protein	80					innate immune response						0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TGGCTCCTTTGGCCCCAGTGA	0.622000													7	60	---	---	---	---	7.48243e-07	3.49238e-05	0.000442599	1	0
PLXDC2	84898	broad.mit.edu	37	10	20500614	20500614	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr10:20500614G>C	uc001iqg.1	+	10	1715	c.1078G>C	c.(1078-1080)GAT>CAT	p.D360H	PLXDC2_uc001iqh.1_Missense_Mutation_p.D311H|PLXDC2_uc009xkc.1_Intron	NM_032812	NP_116201	Q6UX71	PXDC2_HUMAN	plexin domain containing 2 precursor	360	Extracellular (Potential).|PSI.					integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4						CAGTGGATTTGATCGTCATCG	0.443000													4	6	---	---	---	---	0	0	0.000157383	0	0
RIC3	79608	broad.mit.edu	37	11	8190434	8190434	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr11:8190434C>T	uc001mgd.2	-	1	157	c.103G>A	c.(103-105)GAG>AAG	p.E35K	RIC3_uc001mgc.2_Missense_Mutation_p.E35K|RIC3_uc001mge.2_Missense_Mutation_p.E35K|RIC3_uc010rbl.1_5'UTR|RIC3_uc010rbm.1_Missense_Mutation_p.E35K|RIC3_uc009yfm.2_Missense_Mutation_p.E35K|RIC3_uc009yfn.2_5'UTR|RIC3_uc001mgf.3_Missense_Mutation_p.E35K	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	35	Lumenal (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		GGCGGCGGCTCCTGCCGCTTC	0.657000													6	7	---	---	---	---	0	0	6.40141e-05	0	0
ACAD10	80724	broad.mit.edu	37	12	112182761	112182761	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr12:112182761C>G	uc001tsq.2	+	13	2229	c.2029C>G	c.(2029-2031)CGT>GGT	p.R677G	ACAD10_uc001tsp.2_Missense_Mutation_p.R677G|ACAD10_uc009zvx.2_Missense_Mutation_p.R708G|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	677							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						CATGGAGCAACGTGTGTACCC	0.582000													57	48	---	---	---	---	0	0	0.000147903	0	0
TSC22D1	8848	broad.mit.edu	37	13	45149845	45149845	+	Silent	SNP	G	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr13:45149845G>C	uc001uzn.3	-	1	857	c.366C>G	c.(364-366)TCC>TCG	p.S122S	TSC22D1_uc001uzo.1_Silent_p.S122S	NM_183422	NP_904358	Q15714	T22D1_HUMAN	TSC22 domain family, member 1 isoform 1	122					transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding transcription factor activity				0		all_hematologic(4;8.74e-08)|Acute lymphoblastic leukemia(4;1.78e-07)|Lung NSC(96;2.21e-05)|Breast(139;0.000625)|Prostate(109;0.000947)|Hepatocellular(98;0.0202)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000522)|BRCA - Breast invasive adenocarcinoma(63;0.118)		TGATACTAGCGGAGATCTGAG	0.493000													127	151	---	---	---	---	0	0	0.000147903	0	0
ABHD4	63874	broad.mit.edu	37	14	23075421	23075421	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr14:23075421G>A	uc001wgm.2	+	5	803	c.734G>A	c.(733-735)TGC>TAC	p.C245Y	ABHD4_uc010tna.1_Missense_Mutation_p.A272T|ABHD4_uc010tnb.1_RNA	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	245					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		ATTTACCACTGCAACGCACAG	0.522000													13	10	---	---	---	---	0	0	0.00010058	0	0
DAAM1	23002	broad.mit.edu	37	14	59789679	59789679	+	Silent	SNP	C	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr14:59789679C>T	uc001xdz.1	+	6	635	c.510C>T	c.(508-510)TAC>TAT	p.Y170Y	DAAM1_uc001xea.1_Silent_p.Y170Y|DAAM1_uc001xeb.1_Silent_p.Y170Y	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	170	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		CCATGGACTACGAGACCTCAG	0.448000													58	67	---	---	---	---	0	0	0.000147903	0	0
STON2	85439	broad.mit.edu	37	14	81744032	81744032	+	Silent	SNP	G	A	A			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr14:81744032G>A	uc010tvu.1	-	4	1824	c.1623C>T	c.(1621-1623)TTC>TTT	p.F541F	STON2_uc001xvk.1_Silent_p.F541F|STON2_uc010tvt.1_Silent_p.F338F	NM_033104	NP_149095	Q8WXE9	STON2_HUMAN	stonin 2	541	SHD.				endocytosis|intracellular protein transport|regulation of endocytosis	clathrin adaptor complex|nucleolus	protein binding			skin(3)|pancreas(2)	5				BRCA - Breast invasive adenocarcinoma(234;0.0348)		CTGCATGGATGAAACTCAGGA	0.498000													50	66	---	---	---	---	0	0	0.000147903	0	0
BTBD7	55727	broad.mit.edu	37	14	93723588	93723588	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr14:93723588G>C	uc001ybo.2	-	6	1887	c.1561C>G	c.(1561-1563)CGA>GGA	p.R521G	BTBD7_uc010aur.2_Missense_Mutation_p.R46G|BTBD7_uc010two.1_Missense_Mutation_p.R341G|BTBD7_uc001ybp.2_Missense_Mutation_p.R170G|BTBD7_uc001ybq.3_Missense_Mutation_p.R436G	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	521										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		TGTTCAATTCGCACAAAAGGT	0.408000													55	75	---	---	---	---	0	0	0.000147903	0	0
TECPR2	9895	broad.mit.edu	37	14	102873742	102873742	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr14:102873742C>T	uc001ylw.1	+	3	435	c.287C>T	c.(286-288)ACA>ATA	p.T96I	TECPR2_uc010txw.1_Missense_Mutation_p.T96I|TECPR2_uc010awl.2_Missense_Mutation_p.T96I|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	96							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						GCAGCAGGCACAGCCTCTGGC	0.463000													54	36	---	---	---	---	0	0	0.000147903	0	0
ADAM6	8755	broad.mit.edu	37	14	107062402	107062402	+	RNA	SNP	G	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr14:107062402G>C	uc010tyt.1	-	131		c.6193C>G								Parts of antibodies, mostly variable regions.												0						TCCTGGGCCCGACTCCTGCAG	0.597000													3	56	---	---	---	---	0	0	0.000274275	0	0
LOC645752	645752	broad.mit.edu	37	15	78211548	78211548	+	Silent	SNP	T	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr15:78211548T>C	uc010bky.2	-	11	983	c.219A>G	c.(217-219)CAA>CAG	p.Q73Q		NR_027024				SubName: Full=GOLGA6 protein; Flags: Fragment;												0						CCACCTGGGATTGGAGCTTTC	0.562000													4	215	---	---	---	---	0	0	0.00024832	0	0
NUP93	9688	broad.mit.edu	37	16	56782202	56782202	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr16:56782202C>T	uc002eka.2	+	2	164	c.43C>T	c.(43-45)CAG>TAG	p.Q15*		NM_014669	NP_055484	Q8N1F7	NUP93_HUMAN	nucleoporin 93kDa	15					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(1)|lung(1)	2						GCAAGCTGAACAGCTTGCTGC	0.517000													31	74	---	---	---	---	0	0	0.000339439	0	0
NCOR1	9611	broad.mit.edu	37	17	15983374	15983374	+	Silent	SNP	G	A	A			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr17:15983374G>A	uc002gpo.2	-	26	3645	c.3405C>T	c.(3403-3405)ACC>ACT	p.T1135T	NCOR1_uc002gpn.2_Silent_p.T1151T|NCOR1_uc002gpp.1_Silent_p.T1042T|NCOR1_uc010vwb.1_5'UTR|NCOR1_uc010coy.2_Silent_p.T43T|NCOR1_uc010vwc.1_5'UTR	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1135	Interaction with ETO.				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TGGCTCCTGCGGTACCTGAAT	0.463000													28	29	---	---	---	---	0	0	0.000227799	0	0
CCL13	6357	broad.mit.edu	37	17	32683581	32683581	+	Silent	SNP	C	G	G			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr17:32683581C>G	uc002hic.2	+	1	111	c.36C>G	c.(34-36)CTC>CTG	p.L12L		NM_005408	NP_005399	Q99616	CCL13_HUMAN	small inducible cytokine A13 precursor	12					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response	extracellular space	chemokine activity|signal transducer activity				0		Ovarian(249;0.0443)|Breast(31;0.151)				GCCTGCTGCTCATGACAGCAG	0.502000													22	26	---	---	---	---	0	0	0.000586117	0	0
NPEPPS	9520	broad.mit.edu	37	17	45608849	45608849	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr17:45608849C>G	uc002ilr.3	+	1	406	c.183C>G	c.(181-183)ATC>ATG	p.I61M	NPEPPS_uc010wkt.1_Missense_Mutation_p.I57M|NPEPPS_uc010wku.1_Missense_Mutation_p.I61M	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	61					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						TCTCCCCCATCAACTACAGCC	0.577000													7	8	---	---	---	---	0	0	0.000157383	0	0
ALPK2	115701	broad.mit.edu	37	18	56204584	56204584	+	Silent	SNP	G	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr18:56204584G>C	uc002lhj.3	-	5	3049	c.2835C>G	c.(2833-2835)CTC>CTG	p.L945L	ALPK2_uc002lhk.1_Silent_p.L276L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	945							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CAGAAGAAAGGAGCTGTGTTT	0.532000													15	11	---	---	---	---	0	0	0.000219431	0	0
CELF5	60680	broad.mit.edu	37	19	3282183	3282183	+	Silent	SNP	G	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr19:3282183G>C	uc002lxm.2	+	7	847	c.810G>C	c.(808-810)GTG>GTC	p.V270V	CELF5_uc002lxl.1_Silent_p.V270V|CELF5_uc010dtj.1_Silent_p.V270V|CELF5_uc010xhg.1_Silent_p.V156V|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	270					mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						GTCCCGGCGTGGCCTTCTCAC	0.622000													64	118	---	---	---	---	0	0	0.000147903	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010294	24010294	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr19:24010294C>G	uc002nrn.2	+	4	754	c.331C>G	c.(331-333)CAG>GAG	p.Q111E		NM_002295	NP_002286			ribosomal protein SA												0						CTTCACTAACCAGATCCAGGC	0.567000													3	68	---	---	---	---	0	0	6.4e-05	0	0
PDCD1	5133	broad.mit.edu	37	2	242794494	242794494	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr2:242794494C>T	uc002wcq.3	-	3	516	c.448G>A	c.(448-450)GAA>AAA	p.E150K	PDCD1_uc010fzs.2_Intron|PDCD1_uc010fzt.2_RNA	NM_005018	NP_005009	Q15116	PDCD1_HUMAN	programmed cell death 1 precursor	150	Extracellular (Potential).				apoptosis|humoral immune response|multicellular organismal development|T cell costimulation	integral to membrane	protein tyrosine phosphatase activity|signal transducer activity			ovary(1)	1		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0219)		GTGGGCACTTCTGCCCTTCTC	0.677000													9	21	---	---	---	---	0	0	3.86212e-05	0	0
FRG1B	284802	broad.mit.edu	37	20	29628300	29628300	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr20:29628300G>A	uc010ztl.1	+	3	244	c.212G>A	c.(211-213)AGT>AAT	p.S71N	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23N					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GAAGCAAAAAGTAAAACAGCA	0.358000													6	79	---	---	---	---	0	0	8.12818e-05	0	0
NPBWR2	2832	broad.mit.edu	37	20	62737969	62737969	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr20:62737969C>A	uc011abt.1	-	1	216	c.216G>T	c.(214-216)AGG>AGT	p.R72S		NM_005286	NP_005277	P48146	NPBW2_HUMAN	neuropeptides B/W receptor 2	72	Cytoplasmic (Potential).					plasma membrane	opioid receptor activity|protein binding			large_intestine(1)	1	all_cancers(38;2.58e-11)|all_epithelial(29;6.4e-13)|Lung NSC(23;1.25e-09)|all_lung(23;4.21e-09)					TCTTGGGCGCCCTTAGGATTA	0.617000													33	25	---	---	---	---	4.31634e-10	2.1129e-08	0.000409698	1	0
LOC96610	96610	broad.mit.edu	37	22	22664115	22664115	+	RNA	SNP	A	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr22:22664115A>T	uc011aim.1	+	30		c.1972A>T			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TGTTTAATTCAGCCTTGGAAG	0.413000													5	114	---	---	---	---	0	0	0.000219431	0	0
IL17REL	400935	broad.mit.edu	37	22	50436654	50436654	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr22:50436654A>G	uc003bje.1	-	10	918	c.686T>C	c.(685-687)GTG>GCG	p.V229A		NM_001001694	NP_001001694	Q6ZVW7	I17EL_HUMAN	interleukin 17 receptor E-like	229										pancreas(1)	1		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		ATGGCCACTCACAGGGCAGGC	0.562000													3	78	---	---	---	---	0	0	0.00024832	0	0
LSAMP	4045	broad.mit.edu	37	3	115561414	115561414	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr3:115561414T>C	uc003ebt.2	-	5	1161	c.661A>G	c.(661-663)ATC>GTC	p.I221V	LSAMP_uc011bis.1_Missense_Mutation_p.I221V	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	221	Ig-like C2-type 3.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		GATTCTGTGATAGTGGGAGGA	0.423000													13	19	---	---	---	---	0	0	0.00010058	0	0
TMEM66	51669	broad.mit.edu	37	8	29927254	29927254	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr8:29927254G>T	uc003xhs.2	-	3	788	c.604C>A	c.(604-606)CCA>ACA	p.P202T	TMEM66_uc003xht.2_Missense_Mutation_p.P202T|TMEM66_uc003xhu.2_Missense_Mutation_p.P166T|TMEM66_uc003xhv.2_Missense_Mutation_p.P30T	NM_016127	NP_057211	Q96BY9	TMM66_HUMAN	transmembrane protein 66 precursor	202						integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(542;0.0993)|Kidney(114;0.119)		GAGTACGGTGGAGGAGAATAC	0.488000													32	83	---	---	---	---	3.90053e-15	1.95709e-13	0.000409698	1	0
RIMS2	9699	broad.mit.edu	37	8	105261014	105261014	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr8:105261014C>T	uc003yls.2	+	25	3857	c.3616C>T	c.(3616-3618)CGC>TGC	p.R1206C	RIMS2_uc003ylp.2_Missense_Mutation_p.R1188C|RIMS2_uc003ylw.2_Missense_Mutation_p.R1195C|RIMS2_uc003ylq.2_Missense_Mutation_p.R1002C|RIMS2_uc003ylr.2_Missense_Mutation_p.R1027C	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	1250					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			GCTAGTGGGACGCCAGACTCT	0.428000										HNSCC(12;0.0054)			17	30	---	---	---	---	0	0	0.000132079	0	0
FREM1	158326	broad.mit.edu	37	9	14759843	14759843	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr9:14759843T>C	uc003zlm.2	-	28	5851	c.5261A>G	c.(5260-5262)GAG>GGG	p.E1754G	FREM1_uc010mic.2_Intron|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.E290G	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1754	Calx-beta.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ACCCACATTCTCACAGACTTC	0.388000													20	29	---	---	---	---	0	0	0.000132079	0	0
ZNF618	114991	broad.mit.edu	37	9	116811046	116811046	+	Silent	SNP	C	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr9:116811046C>T	uc004bid.2	+	15	1563	c.1464C>T	c.(1462-1464)AGC>AGT	p.S488S	ZNF618_uc004bic.2_Silent_p.S395S|ZNF618_uc011lxi.1_Silent_p.S455S|ZNF618_uc011lxj.1_Silent_p.S456S|ZNF618_uc010mvb.2_Silent_p.S78S	NM_133374	NP_588615	Q5T7W0	ZN618_HUMAN	zinc finger protein 618	488					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCGTGGTCAGCGGGAAGGAGT	0.582000													33	67	---	---	---	---	0	0	0.000339439	0	0
NDUFS5	4725	broad.mit.edu	37	1	39494585	39494586	+	Frame_Shift_Ins	INS	-	TA	TA			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr1:39494585_39494586insTA	uc001ccx.2	+	2	260_261	c.189_190insTA	c.(187-192)TTCGTAfs	p.F63fs	NDUFS5_uc001ccy.2_Frame_Shift_Ins_p.F63fs	NM_004552	NP_004543	O43920	NDUS5_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 5,	63_64	C-X9-C motif 2.				mitochondrial electron transport, NADH to ubiquinone|mitochondrial respiratory chain complex I assembly|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity				0	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)	OV - Ovarian serous cystadenocarcinoma(33;1.93e-18)		NADH(DB00157)	ATGATGATTTCGTAGAGTGTTT	0.381													69	74	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	71548640	71548641	+	IGR	INS	-	T	T			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr11:71548640_71548641insT								DEFB108B (33 upstream) : RNF121 (91127 downstream)																							TTTATGTTCTCTTTTTtctctc	0.317													27	159	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	62932555	62932556	+	IGR	DEL	GT	-	-	rs35142297		TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr17:62932555_62932556delGT								LRRC37A3 (16969 upstream) : AMZ2P1 (30112 downstream)																							gtgtgtgttcgtgtgtgtgtgt	0.238													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	9390589	9390589	+	IGR	DEL	A	-	-			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr19:9390589delA								OR7E24 (27850 upstream) : ZNF699 (15397 downstream)																							ggaaggaaggaaaggaagaaa	0.139													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	85137016	85137017	+	IGR	INS	-	CAC	CAC			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr2:85137016_85137017insCAC								TMSB10 (3217 upstream) : KCMF1 (61214 downstream)																							accttcaccatcaccaccacca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	19804031	19804031	+	IGR	DEL	G	-	-	rs35040175		TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr20:19804031delG								SLC24A3 (100491 upstream) : RIN2 (66179 downstream)																							TGCTCTGCCTGCTTTTTTTTT	0.393													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	28516210	28516211	+	IGR	DEL	GC	-	-	rs148404345		TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr21:28516210_28516211delGC								ADAMTS5 (176771 upstream) : NCRNA00113 (578487 downstream)																							CGGCCAGCGGGCGCGCGCGGAA	0.693													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	25497611	25497612	+	IGR	INS	-	CTTT	CTTT	rs144415784	by1000genomes	TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr4:25497611_25497612insCTTT								ANAPC4 (77492 upstream) : SLC34A2 (159823 downstream)																							ttccttccttccttccttcctt	0.040													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	42521030	42521037	+	IGR	DEL	GAAGGAAG	-	-			TCGA-BJ-A191-01A-11D-A13W-08	TCGA-BJ-A191-10A-01D-A13W-08									Somatic	Phase_I	Capture				Illumina GAIIx	64c2e6a0-2341-49c4-a6dd-656e7bb505dd	62c780b8-c3a9-4c61-a1bc-18a80c5ca48d	g.chr6:42521030_42521037delGAAGGAAG								TRERF1 (101165 upstream) : UBR2 (11021 downstream)																							aagaaaaaaCgaaggaaggaaggaagga	0.010													5	2	---	---	---	---					
