Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MEGF6	1953	broad.mit.edu	37	1	3427403	3427403	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr1:3427403T>C	uc001akl.2	-	10	1405	c.1178A>G	c.(1177-1179)TAC>TGC	p.Y393C	MEGF6_uc001akk.2_Missense_Mutation_p.Y288C	NM_001409	NP_001400	O75095	MEGF6_HUMAN	EGF-like-domain, multiple 3 precursor	393	EGF-like 7.					extracellular region	calcium ion binding			large_intestine(1)	1	all_cancers(77;0.00681)|all_epithelial(69;0.00301)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.105)	all_epithelial(116;7.41e-22)|all_lung(118;8.3e-09)|Lung NSC(185;3.55e-06)|Breast(487;0.000659)|Renal(390;0.00121)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Lung SC(97;0.0262)|Ovarian(437;0.0308)|Medulloblastoma(700;0.211)		Epithelial(90;3.78e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.86e-22)|GBM - Glioblastoma multiforme(42;1.96e-12)|Colorectal(212;6.15e-05)|COAD - Colon adenocarcinoma(227;0.000241)|Kidney(185;0.000448)|BRCA - Breast invasive adenocarcinoma(365;0.000779)|KIRC - Kidney renal clear cell carcinoma(229;0.00645)|STAD - Stomach adenocarcinoma(132;0.00669)|Lung(427;0.213)		GCCGCACTCGTACCCGCCAGG	0.687													76	100	---	---	---	---	0	0	0.014410	0	0
AMY2B	280	broad.mit.edu	37	1	104121967	104121967	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr1:104121967G>T	uc001duq.2	+	12	1997	c.1381G>T	c.(1381-1383)GCT>TCT	p.A461S	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.A461S|AMY2B_uc001dus.1_Intron	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	461					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		TGGTCTTCCTGCTGGCACATA	0.338													13	30	---	---	---	---	1.52009e-12	1.71497e-12	0.003163	1	0
OR2M1P	388762	broad.mit.edu	37	1	248285487	248285487	+	Missense_Mutation	SNP	A	G	G	rs6587423	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr1:248285487A>G	uc001idy.1	+	1	50	c.50A>G	c.(49-51)TAC>TGC	p.Y17C		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						GCCTTCAACTACTTGTCTGGC	0.507													11	118	---	---	---	---	0	0	0.013537	0	0
MYOF	26509	broad.mit.edu	37	10	95121253	95121253	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr10:95121253T>C	uc001kin.2	-	28	3053	c.2930A>G	c.(2929-2931)GAT>GGT	p.D977G	MYOF_uc001kio.2_Missense_Mutation_p.D964G|MYOF_uc009xue.2_RNA	NM_013451	NP_038479	Q9NZM1	MYOF_HUMAN	myoferlin isoform a	977	Cytoplasmic (Potential).				blood circulation|muscle contraction|plasma membrane repair	caveola|cytoplasmic vesicle membrane|integral to membrane|nuclear membrane	phospholipid binding|protein binding			ovary(3)|breast(1)	4						CCATGCATCATCTTCCCATTC	0.458													34	64	---	---	---	---	0	0	0.012213	0	0
LOC642846	642846	broad.mit.edu	37	12	9453702	9453702	+	RNA	SNP	C	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr12:9453702C>T	uc010sgp.1	+	10		c.1341C>T			LOC642846_uc001qvp.2_RNA	NR_024374				Homo sapiens cDNA FLJ60280 complete cds, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-).												0						GGTGGTGCTGCCCTATCAGAT	0.662													3	13	---	---	---	---	0	0	0.014758	0	0
ESPL1	9700	broad.mit.edu	37	12	53670431	53670431	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr12:53670431G>T	uc001sck.2	+	8	1819	c.1728G>T	c.(1726-1728)TGG>TGT	p.W576C	ESPL1_uc001scj.2_Missense_Mutation_p.W251C	NM_012291	NP_036423	Q14674	ESPL1_HUMAN	separase	576					apoptosis|cytokinesis|establishment of mitotic spindle localization|mitotic sister chromatid segregation|negative regulation of sister chromatid cohesion|positive regulation of mitotic metaphase/anaphase transition|proteolysis	centrosome|nucleus	cysteine-type peptidase activity|protein binding			lung(1)|kidney(1)|skin(1)	3						TCAGTGGCTGGGACCCGGAGA	0.632													27	35	---	---	---	---	4.72057e-08	5.19263e-08	0.021523	1	0
MON2	23041	broad.mit.edu	37	12	62931471	62931471	+	Silent	SNP	C	G	G	rs138597890	byFrequency	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr12:62931471C>G	uc001sre.2	+	16	2494	c.2103C>G	c.(2101-2103)GTC>GTG	p.V701V	MON2_uc009zqj.2_Silent_p.V701V|MON2_uc010ssl.1_Silent_p.V629V|MON2_uc010ssm.1_Silent_p.V678V|MON2_uc010ssn.1_Silent_p.V701V|MON2_uc001srf.2_Silent_p.V464V	NM_015026	NP_055841	Q7Z3U7	MON2_HUMAN	MON2 homolog	701					Golgi to endosome transport|protein transport	cytoplasm	ARF guanyl-nucleotide exchange factor activity|binding			central_nervous_system(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.218)	GBM - Glioblastoma multiforme(28;0.128)		GGCAACTTGTCTTGGCAACTC	0.358													6	20	---	---	---	---	0	0	0.001984	0	0
OAS2	4939	broad.mit.edu	37	12	113435354	113435354	+	Silent	SNP	G	A	A	rs45530035		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr12:113435354G>A	uc001tuj.2	+	4	797	c.657G>A	c.(655-657)TCG>TCA	p.S219S	OAS2_uc001tui.1_Silent_p.S219S	NM_016817	NP_058197	P29728	OAS2_HUMAN	2'-5'-oligoadenylate synthetase 2 isoform 1	219	OAS domain 1.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|membrane|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(1)	1						ATTTACCCTCGCTGTCTCCGT	0.493													7	50	---	---	---	---	0	0	0.003080	0	0
KSR2	283455	broad.mit.edu	37	12	117922266	117922266	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr12:117922266G>A	uc001two.2	-	16	2373	c.2318C>T	c.(2317-2319)ACG>ATG	p.T773M		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	802	Protein kinase.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TCCAAAGTCCGTGATGACCAC	0.542													4	27	---	---	---	---	0	0	0.009096	0	0
MSLNL	401827	broad.mit.edu	37	16	824957	824957	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr16:824957C>T	uc002cjz.1	-	7	1615	c.1615G>A	c.(1615-1617)GCG>ACG	p.A539T		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	188	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						ATGCTGGACGCGTCCATGTCA	0.716													25	107	---	---	---	---	0	0	0.021523	0	0
ZNF624	57547	broad.mit.edu	37	17	16525630	16525630	+	Missense_Mutation	SNP	A	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr17:16525630A>T	uc010cpi.1	-	6	2653	c.2570T>A	c.(2569-2571)ATA>AAA	p.I857K		NM_020787	NP_065838	Q9P2J8	ZN624_HUMAN	zinc finger protein 624	857	C2H2-type 21.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TCTTTGATGTATTCTTTGATG	0.328													16	37	---	---	---	---	0	0	0.004007	0	0
NF1	4763	broad.mit.edu	37	17	29496957	29496957	+	Missense_Mutation	SNP	T	A	A	rs112306990	byFrequency	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr17:29496957T>A	uc002hgg.2	+	5	861	c.528T>A	c.(526-528)GAT>GAA	p.D176E	NF1_uc002hge.1_Missense_Mutation_p.D176E|NF1_uc002hgf.1_Missense_Mutation_p.D176E|NF1_uc002hgh.2_Missense_Mutation_p.D176E|NF1_uc010csn.1_Intron	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	176			D -> E (in mismatch repair deficient cancer cells; polymorphism).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.D176E(1)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATGTTCATGATATAGAATTGT	0.269			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			5	30	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	17	39296361	39296361	+	RNA	SNP	A	G	G	rs146882220	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr17:39296361A>G	uc010cxk.1	-	1		c.343T>C								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		CAGCACTGGGACCTGCAGCAC	0.438													8	67	---	---	---	---	0	0	0.016723	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028102	45028102	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr19:45028102C>T	uc010ejn.1	-	3	405	c.389G>A	c.(388-390)CGG>CAG	p.R130Q	CEACAM20_uc010ejo.1_Missense_Mutation_p.R130Q|CEACAM20_uc010ejp.1_Missense_Mutation_p.R130Q|CEACAM20_uc010ejq.1_Missense_Mutation_p.R130Q	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion	130	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TGAGTCCTCCCGCTGGACAAT	0.527													7	9	---	---	---	---	0	0	0.001984	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45716591	45716591	+	Silent	SNP	G	A	A			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr19:45716591G>A	uc002pay.1	-	10	1007	c.966C>T	c.(964-966)CTC>CTT	p.L322L		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	322										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		CACGGATGTCGAGGAGGGCTG	0.672													81	106	---	---	---	---	0	0	0.014410	0	0
ANKRD20B	729171	broad.mit.edu	37	2	95464577	95464577	+	RNA	SNP	T	C	C	rs10193770	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr2:95464577T>C	uc010fhp.2	-	17		c.2813A>G				NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						ACCATATTGTTTTCCATATGT	0.303													3	11	---	---	---	---	0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	2	95552783	95552783	+	RNA	SNP	C	T	T	rs12717784	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr2:95552783C>T	uc002stv.1	-	7		c.807G>A								Homo sapiens cDNA FLJ44118 fis, clone TESTI4047069.																		GTCATAAAGACGAAGGATTAT	0.388													3	13	---	---	---	---	0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179537384	179537384	+	Missense_Mutation	SNP	T	G	G			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr2:179537384T>G	uc010zfg.1	-	148	31154	c.30930A>C	c.(30928-30930)AAA>AAC	p.K10310N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.K6971N|TTN_uc010fre.1_Intron|TTN_uc010zfk.1_5'Flank|TTN_uc002una.1_RNA|TTN_uc010frf.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11237							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTGCCTCTTTTTTCTGAACAG	0.363													3	12	---	---	---	---	0	0	0.004672	0	0
ABI2	10152	broad.mit.edu	37	2	204267413	204267413	+	Missense_Mutation	SNP	T	A	A	rs140793695		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr2:204267413T>A	uc002vaa.2	+	9	1383	c.1148T>A	c.(1147-1149)CTT>CAT	p.L383H	ABI2_uc002uzz.2_Missense_Mutation_p.L316H|ABI2_uc010zih.1_Missense_Mutation_p.L31H|ABI2_uc010zii.1_Missense_Mutation_p.L377H|ABI2_uc010zij.1_Missense_Mutation_p.L260H|ABI2_uc002vab.2_Missense_Mutation_p.L271H|ABI2_uc010zik.1_Missense_Mutation_p.L108H|ABI2_uc010zil.1_Missense_Mutation_p.L218H|ABI2_uc010zim.1_Missense_Mutation_p.L169H|ABI2_uc002vac.2_Missense_Mutation_p.L169H|ABI2_uc010zin.1_Missense_Mutation_p.L31H	NM_005759	NP_005750	Q9NYB9	ABI2_HUMAN	abl interactor 2	383	Pro-rich.				actin polymerization or depolymerization|cell migration|peptidyl-tyrosine phosphorylation	cytoskeleton|cytosol|filopodium|lamellipodium	cytoskeletal adaptor activity|DNA binding|kinase binding|proline-rich region binding|SH3 domain binding|ubiquitin protein ligase binding				0						CAAACAAGCCTTCAGAATCAG	0.408													5	29	---	---	---	---	0	0	0.014758	0	0
BRWD1	54014	broad.mit.edu	37	21	40668280	40668280	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr21:40668280T>C	uc002yxk.1	-	6	498	c.359A>G	c.(358-360)CAC>CGC	p.H120R	BRWD1_uc002yxl.2_Missense_Mutation_p.H120R	NM_018963	NP_061836	Q9NSI6	BRWD1_HUMAN	bromodomain and WD repeat domain containing 1	120					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				skin(3)|ovary(1)	4		Prostate(19;8.44e-08)|all_epithelial(19;0.223)				CCAAACTGTGTGCCTGCAGTC	0.368													19	23	---	---	---	---	0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	22	18846088	18846088	+	RNA	SNP	A	G	G	rs9605845		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr22:18846088A>G	uc002zoe.2	+	5		c.2450A>G			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		CACCTCCTCCATGCCTCGGCG	0.627													29	53	---	---	---	---	0	0	0.012213	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659734	24659734	+	RNA	SNP	T	C	C			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr22:24659734T>C	uc002zzs.3	+	7		c.3466T>C			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						CTCTCTCCTGTGGGAGGGGGG	0.632													5	40	---	---	---	---	0	0	0.003080	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13338496	13338496	+	RNA	SNP	A	G	G	rs11931734	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr4:13338496A>G	uc003gms.2	+	1		c.3460A>G				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						GCAATTTGGTATTGGCTTTTA	0.453													5	28	---	---	---	---	0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	4	88813100	88813100	+	Missense_Mutation	SNP	G	A	A	rs3811816	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr4:88813100G>A	uc010iko.1	+	1	106	c.106G>A	c.(106-108)GAG>AAG	p.E36K						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		CTATTCCAACGAGGAGATTTT	0.463													4	20	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	4	88813126	88813126	+	Silent	SNP	C	A	A	rs3811817	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr4:88813126C>A	uc010iko.1	+	1	132	c.132C>A	c.(130-132)ATC>ATA	p.I44I						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		AGGAGTTGATCTCTAATGCTT	0.443													6	26	---	---	---	---	0.00198382	0.00207829	0.001984	1	0
Unknown	0	broad.mit.edu	37	4	88813583	88813583	+	Missense_Mutation	SNP	G	A	A	rs3828551	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr4:88813583G>A	uc010iko.1	+	2	527	c.527G>A	c.(526-528)CGG>CAG	p.R176Q						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;																		GAAGAGAGGCGGGTCAAAGAA	0.418													6	39	---	---	---	---	0	0	0.001168	0	0
LOC285501	285501	broad.mit.edu	37	4	178881982	178881982	+	RNA	SNP	G	T	T	rs13109967	by1000genomes	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr4:178881982G>T	uc010iru.2	+	3		c.445G>T				NR_028342				Homo sapiens cDNA clone IMAGE:4828874.												0		all_lung(41;6.03e-08)|Lung NSC(41;4.26e-07)|Breast(14;0.00066)|Melanoma(52;0.00168)|Prostate(90;0.0129)|all_hematologic(60;0.0202)|Renal(120;0.0246)|Colorectal(36;0.0508)|Hepatocellular(41;0.236)		all cancers(43;9.24e-25)|Epithelial(43;6.28e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.29e-10)|LUSC - Lung squamous cell carcinoma(1;2.61e-05)|Lung(1;3.22e-05)|GBM - Glioblastoma multiforme(59;0.000185)|Colorectal(24;0.000244)|STAD - Stomach adenocarcinoma(60;0.000777)|COAD - Colon adenocarcinoma(29;0.000884)		TCTTTCCGGGGATCAAAAGAA	0.333													4	8	---	---	---	---	0.00909568	0.0094167	0.009096	1	0
SPEF2	79925	broad.mit.edu	37	5	35771773	35771773	+	Silent	SNP	C	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr5:35771773C>T	uc003jjo.2	+	27	3975	c.3864C>T	c.(3862-3864)CCC>CCT	p.P1288P	SPEF2_uc003jjp.1_Silent_p.P774P|SPEF2_uc003jjr.2_5'Flank	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1288					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CAGCAGACCCCAAAGAAAAAT	0.388													4	19	---	---	---	---	0	0	0.001168	0	0
LAMA4	3910	broad.mit.edu	37	6	112479970	112479970	+	Missense_Mutation	SNP	G	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr6:112479970G>T	uc003pvu.2	-	14	2090	c.1781C>A	c.(1780-1782)GCA>GAA	p.A594E	LAMA4_uc003pvv.2_Missense_Mutation_p.A587E|LAMA4_uc003pvt.2_Missense_Mutation_p.A587E	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	594	Potential.|Domain II and I.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		AAGGTCCTGTGCATGGTCAAT	0.343													12	18	---	---	---	---	6.42651e-13	7.34459e-13	0.010729	1	0
SMPDL3A	10924	broad.mit.edu	37	6	123126106	123126106	+	Missense_Mutation	SNP	T	G	G	rs111976561	byFrequency	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr6:123126106T>G	uc003pzg.2	+	6	1312	c.791T>G	c.(790-792)ATC>AGC	p.I264S	SMPDL3A_uc003pzh.2_Missense_Mutation_p.I133S	NM_006714	NP_006705	Q92484	ASM3A_HUMAN	acid sphingomyelinase-like phosphodiesterase 3A	264					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|protein binding|sphingomyelin phosphodiesterase activity				0				GBM - Glioblastoma multiforme(226;0.236)		TCACAGAACATCACAGCAATG	0.368													4	28	---	---	---	---	0	0	0.009096	0	0
RINT1	60561	broad.mit.edu	37	7	105177177	105177178	+	Missense_Mutation	DNP	AA	CT	CT			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr7:105177177_105177178AA>CT	uc003vda.1	+	3	485_486	c.254_255AA>CT	c.(253-255)AAA>ACT	p.K85T	RINT1_uc010ljj.1_Intron	NM_021930	NP_068749	Q6NUQ1	RINT1_HUMAN	RAD50 interactor 1	85					cell cycle|G2/M transition DNA damage checkpoint|protein transport|vesicle-mediated transport	endoplasmic reticulum membrane	protein binding			ovary(3)|central_nervous_system(1)	4						ACAGTAAGTAAAATGCAGTTAG	0.282													5	24	---	---	---	---	0	0	0.004672	0	0
C8orf34	116328	broad.mit.edu	37	8	69434071	69434071	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr8:69434071G>A	uc010lyz.2	+	6	594	c.545G>A	c.(544-546)CGT>CAT	p.R182H	C8orf34_uc010lyy.1_Missense_Mutation_p.R182H|C8orf34_uc003xyb.2_Missense_Mutation_p.R157H	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	182					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CTGAGGCCCCGTGTGATTGGA	0.413													10	16	---	---	---	---	0	0	0.006214	0	0
CXorf22	170063	broad.mit.edu	37	X	35989984	35989984	+	Splice_Site	SNP	A	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chrX:35989984A>T	uc004ddj.2	+	13	2217	c.2158_splice	c.e13-2	p.V720_splice	CXorf22_uc010ngv.2_Splice_Site	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063											large_intestine(1)|lung(1)|ovary(1)	3						GATTTTTTACAGGTTCTCAAA	0.323													6	2	---	---	---	---	0	0	0.001168	0	0
RBMY1A3P	286557	broad.mit.edu	37	Y	9160470	9160470	+	RNA	SNP	C	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chrY:9160470C>T	uc004frl.1	-	1		c.14G>A				NR_001547				Homo sapiens RBMY1A3P pseudogene, mRNA sequence.												0						GATGATCTGCCTCTACCATTG	0.333													6	42	---	---	---	---	0	0	0.001984	0	0
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr1:120612003_120612004delGG	uc001eik.2	-	1	273_274	c.17_18delCC	c.(16-18)CCCfs	p.P6fs	NOTCH2_uc001eil.2_Frame_Shift_Del_p.P6fs|NOTCH2_uc001eim.3_5'UTR	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.663			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				13	73	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	154350594	154350594	+	IGR	DEL	T	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr1:154350594delT								ATP8B2 (26815 upstream) : IL6R (27075 downstream)																							TCTTTTTTTCTTTTTTTTTTT	0.338													3	6	---	---	---	---					
SVIL	6840	broad.mit.edu	37	10	29773738	29773738	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr10:29773738delC	uc001iut.1	-	27	5555	c.4802delG	c.(4801-4803)AGTfs	p.S1601fs	LOC387647_uc001iup.2_RNA|LOC387647_uc001iuq.1_Intron|SVIL_uc010qdw.1_Frame_Shift_Del_p.S515fs|SVIL_uc001iuu.1_Frame_Shift_Del_p.S1175fs|SVIL_uc009xlc.2_Frame_Shift_Del_p.S393fs	NM_021738	NP_068506	O95425	SVIL_HUMAN	supervillin isoform 2	1601	Gelsolin-like 2.|Interaction with NEB.				cytoskeleton organization|skeletal muscle tissue development	cell junction|costamere|invadopodium|nucleus|podosome	actin filament binding			ovary(5)|upper_aerodigestive_tract(1)	6		Breast(68;0.103)				GTAAACTTCACTACCAAAATC	0.403													13	28	---	---	---	---					
MKI67	4288	broad.mit.edu	37	10	129903675	129903676	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr10:129903675_129903676insT	uc001lke.2	-	13	6623_6624	c.6428_6429insA	c.(6427-6429)ACCfs	p.T2143fs	MKI67_uc001lkf.2_Frame_Shift_Ins_p.T1783fs|MKI67_uc009yav.1_Frame_Shift_Ins_p.T1718fs|MKI67_uc009yaw.1_Frame_Shift_Ins_p.T1293fs	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2143	16 X 122 AA approximate repeats.|10.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CTGTGTGTGTGGTCTGTGTGAG	0.495													9	368	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262778	130262778	+	IGR	DEL	C	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr10:130262778delC								MKI67 (338310 upstream) : None (None downstream)																							tcctcctcctccaccatcctc	0.000													9	84	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	49003394	49003395	+	IGR	INS	-	C	C			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr11:49003394_49003395insC								OR4A47 (492122 upstream) : FOLH1 (164793 downstream)																							ACAAAAATGAAAAATTCATACA	0.371													2	4	---	---	---	---					
OR8H2	390151	broad.mit.edu	37	11	55872313	55872313	+	5'Flank	DEL	G	-	-	rs35552904		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr11:55872313delG	uc010riy.1	+							NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TAAACAGAAAGtttttttttg	0.114										HNSCC(53;0.14)			2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	19806726	19806726	+	IGR	DEL	A	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr14:19806726delA								POTEG (221784 upstream) : P704P (177228 downstream)																							TATAGGATCCAATAATAAAGA	0.423													7	115	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22691260	22691260	+	IGR	DEL	T	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr15:22691260delT								MIR1268 (177980 upstream) : GOLGA8DP (11025 downstream)																							GGTTGCTTCATCTAGGAGAAG	0.473													7	59	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	35385345	35385347	+	IGR	DEL	GGC	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr15:35385345_35385347delGGC								ZNF770 (104891 upstream) : LOC723972 (144180 downstream)																							cggtggcccaggcggcggcggcg	0.399													7	180	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	59200947	59200948	+	IGR	INS	-	T	T			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr16:59200947_59200948insT								GOT2 (432701 upstream) : None (None downstream)																							TCTTCCTCTACAAGAAATACTT	0.416													6	13	---	---	---	---					
ZFHX3	463	broad.mit.edu	37	16	72822564	72822566	+	In_Frame_Del	DEL	TGC	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr16:72822564_72822566delTGC	uc002fck.2	-	10	10282_10284	c.9609_9611delGCA	c.(9607-9612)CAGCAA>CAA	p.3203_3204QQ>Q	ZFHX3_uc002fcl.2_In_Frame_Del_p.2289_2290QQ>Q	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3203_3204	Poly-Gln.				muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				cacctgtggttgctgctgctgct	0.522													15	633	---	---	---	---					
KIAA0182	23199	broad.mit.edu	37	16	85682289	85682290	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr16:85682289_85682290insC	uc002fix.2	+	3	432_433	c.358_359insC	c.(358-360)ACCfs	p.T120fs	KIAA0182_uc002fiw.2_Frame_Shift_Ins_p.T16fs|KIAA0182_uc002fiy.2_Frame_Shift_Ins_p.T47fs	NM_014615	NP_055430	Q14687	GSE1_HUMAN	genetic suppressor element 1 isoform 1	120							protein binding			large_intestine(3)|ovary(1)|skin(1)	5						CGTGCCCAGCACCCCCCCCGTG	0.688													8	322	---	---	---	---					
KDM6B	23135	broad.mit.edu	37	17	7751764	7751765	+	Frame_Shift_Ins	INS	-	C	C	rs146391855		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr17:7751764_7751765insC	uc002giw.1	+	11	2534_2535	c.2158_2159insC	c.(2158-2160)GCCfs	p.A720fs	KDM6B_uc002gix.2_Frame_Shift_Ins_p.A22fs	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	720	Pro-rich.				inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						AGCAGGCGTGGCCCCCCAACCC	0.559													10	258	---	---	---	---					
TRPV2	51393	broad.mit.edu	37	17	16335490	16335492	+	In_Frame_Del	DEL	TGC	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr17:16335490_16335492delTGC	uc002gpy.2	+	12	2232_2234	c.1865_1867delTGC	c.(1864-1869)GTGCTG>GTG	p.L627del	TRPV2_uc002gpz.2_In_Frame_Del_p.L197del	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	627	Helical; (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		CGCGGCATGGTGCTGCTGCTGCT	0.596													7	163	---	---	---	---					
RSPH6A	81492	broad.mit.edu	37	19	46299165	46299167	+	In_Frame_Del	DEL	CCT	-	-	rs62639328	byFrequency	TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr19:46299165_46299167delCCT	uc002pdm.2	-	6	2257_2259	c.2114_2116delAGG	c.(2113-2118)GAGGGC>GGC	p.E705del	RSPH6A_uc002pdl.2_In_Frame_Del_p.E441del	NM_030785	NP_110412	Q9H0K4	RSH6A_HUMAN	radial spokehead-like 1	705	Glu-rich.					intracellular				ovary(1)|central_nervous_system(1)	2						tcctcctcgccctcctcctcctc	0.438													7	553	---	---	---	---					
VWA3B	200403	broad.mit.edu	37	2	98916641	98916642	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr2:98916641_98916642insA	uc002syo.2	+	25	3646_3647	c.3382_3383insA	c.(3382-3384)GAAfs	p.E1128fs	VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Frame_Shift_Ins_p.E785fs|VWA3B_uc002syp.1_Frame_Shift_Ins_p.E520fs|VWA3B_uc002syq.1_Frame_Shift_Ins_p.E404fs|VWA3B_uc002syr.1_Frame_Shift_Ins_p.E445fs|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1128										ovary(3)|large_intestine(2)|skin(1)	6						TGTGGCCACAGAAAAATTCTAC	0.421													7	86	---	---	---	---					
RBM6	10180	broad.mit.edu	37	3	50004962	50004962	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr3:50004962delT	uc003cyc.2	+	3	237	c.104delT	c.(103-105)CTTfs	p.L35fs	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	35					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		CCTCCTCCCCTTAAGAGTCAT	0.483													48	56	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	75467230	75467230	+	5'Flank	DEL	G	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr3:75467230delG	uc003dpn.1	+											DQ584669																		TTCTGGGAAAGGGATCCCTCC	0.642													8	34	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560458	147560466	+	In_Frame_Del	DEL	GGCGGCGGC	-	-	rs72269802		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr4:147560458_147560466delGGCGGCGGC	uc003ikv.2	+	1	414_422	c.166_174delGGCGGCGGC	c.(166-174)GGCGGCGGCdel	p.GGG65del		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	65_67	Poly-Gly.				estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					CGCTggtggtggcggcggcggcggcggcg	0.397													27	30	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	37086022	37086022	+	IGR	DEL	A	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr5:37086022delA								NIPBL (20102 upstream) : C5orf42 (20308 downstream)																							AATTAATAGGAAAAAAAAaaa	0.204													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	65888170	65888170	+	IGR	DEL	A	-	-	rs147935079		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr7:65888170delA								NCRNA00174 (22775 upstream) : LOC493754 (105276 downstream)																							TATTCAGAGCAAAAAAAAAAA	0.343													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	30841837	30841837	+	IGR	DEL	C	-	-	rs34137012		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr8:30841837delC								TEX15 (95615 upstream) : PURG (11484 downstream)																							CTTCCCCAttctttttttttt	0.229													3	5	---	---	---	---					
FABP12	646486	broad.mit.edu	37	8	82437344	82437345	+	Frame_Shift_Del	DEL	CA	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr8:82437344_82437345delCA	uc011lfp.1	-	4	359_360	c.359_360delTG	c.(358-360)GTGfs	p.V120fs	FABP12_uc003ycg.3_RNA	NM_001105281	NP_001098751	A6NFH5	FBP12_HUMAN	fatty acid binding protein 12	120							lipid binding|transporter activity				0						TAACACTGTTCACAGTACTTTC	0.347													2	4	---	---	---	---					
HRCT1	646962	broad.mit.edu	37	9	35906584	35906586	+	In_Frame_Del	DEL	CCA	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr9:35906584_35906586delCCA	uc003zyr.1	+	1	396_398	c.300_302delCCA	c.(298-303)CTCCAC>CTC	p.H105del	LOC158376_uc003zys.1_5'Flank	NM_001039792	NP_001034881	Q6UXD1	HRCT1_HUMAN	histidine rich carboxyl terminus 1	105	His-rich.					integral to membrane					0						ctcaccacctccaccaccaccac	0.374													9	55	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	130209778	130209778	+	IGR	DEL	A	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chr9:130209778delA								ZNF79 (2128 upstream) : RPL12 (177 downstream)																							actctgtctcaaaaaaaaaaa	0.209													9	43	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			9	21	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13477266	13477266	+	IGR	DEL	C	-	-	rs76830011		TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chrY:13477266delC								None (None upstream) : None (None downstream)																							ACAGCACCCTCCCCGCGGAAG	0.448													10	112	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13489142	13489143	+	IGR	INS	-	G	G			TCGA-BJ-A28S-01A-11D-A19J-08	TCGA-BJ-A28S-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	574a6f3e-f543-4d69-a672-75a0a0d13b7e	5f1f775a-9dd6-4a48-b6b4-9441cc7e3006	g.chrY:13489142_13489143insG								None (None upstream) : None (None downstream)																							CTGGCGAGCCCGGAGTTTCTGC	0.683													8	757	---	---	---	---					
