Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			56	87	---	---	---	---	0	0	0.003610	0	0
CHID1	66005	broad.mit.edu	37	11	883172	883172	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr11:883172G>A	uc001lsl.2	-	10	1096	c.935C>T	c.(934-936)GCC>GTC	p.A312V	CHID1_uc010qwu.1_Missense_Mutation_p.A342V|CHID1_uc010qwv.1_Missense_Mutation_p.A373V|CHID1_uc001lsn.2_Missense_Mutation_p.A337V|CHID1_uc001lsm.2_Missense_Mutation_p.A312V|CHID1_uc001lso.2_Missense_Mutation_p.A312V|CHID1_uc001lsp.2_Missense_Mutation_p.A281V|CHID1_uc010qww.1_Missense_Mutation_p.A312V|uc001lsq.1_5'Flank|uc001lsr.1_5'Flank	NM_023947	NP_076436	Q9BWS9	CHID1_HUMAN	chitinase domain containing 1 isoform a	312					chitin catabolic process|innate immune response	extracellular region|lysosome	cation binding|chitinase activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;5.48e-25)|Epithelial(43;3.75e-24)|BRCA - Breast invasive adenocarcinoma(625;4.65e-05)|Lung(200;0.0624)|LUSC - Lung squamous cell carcinoma(625;0.0735)		AGGCTCACGGGCATCCTTGGA	0.622000													4	144	---	---	---	---	0	0	0.000248	0	0
DNASE2	1777	broad.mit.edu	37	19	12991827	12991827	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr19:12991827C>T	uc002mvn.1	-	2	372	c.226G>A	c.(226-228)GGC>AGC	p.G76S	DNASE2_uc010xmr.1_Missense_Mutation_p.G76S	NM_001375	NP_001366	O00115	DNS2A_HUMAN	deoxyribonuclease II, lysosomal precursor	76					apoptosis	lysosome	deoxyribonuclease II activity|DNA binding|protein binding				0						AGGCTTCGGCCCACGGCCCCC	0.692000								Direct_reversal_of_damage					25	19	---	---	---	---	0	0	0.003954	0	0
WDR92	116143	broad.mit.edu	37	2	68352450	68352450	+	RNA	SNP	G	A	A			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr2:68352450G>A	uc002sed.1	-	9		c.1091C>T						Q96MX6	WDR92_HUMAN	Homo sapiens cDNA FLJ31741 fis, clone NT2RI2007148.						apoptosis|histone lysine methylation		methylated histone residue binding				0						CCCTTGGGCCGCATCTCCATC	0.512000													5	121	---	---	---	---	0	0	0.000602	0	0
ERG	2078	broad.mit.edu	37	21	39795356	39795356	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr21:39795356C>G	uc010gnw.2	-	5	680	c.385G>C	c.(385-387)GAG>CAG	p.E129Q	ERG_uc002yxa.2_Missense_Mutation_p.E122Q|ERG_uc011aek.1_Missense_Mutation_p.E30Q|ERG_uc010gnv.2_Missense_Mutation_p.E30Q|ERG_uc010gnx.2_Missense_Mutation_p.E129Q|ERG_uc011ael.1_Missense_Mutation_p.E129Q|ERG_uc002yxb.2_Missense_Mutation_p.E129Q|ERG_uc011aem.1_Missense_Mutation_p.E122Q|ERG_uc002yxc.3_Missense_Mutation_p.E129Q	NM_001136155	NP_001129627	P11308	ERG_HUMAN	ets-related isoform 4	129	PNT.				cell proliferation|multicellular organismal development|protein phosphorylation	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity		TMPRSS2/ERG(2499)|FUS/ERG(163)|EWSR1/ERG(162)	prostate(2499)|bone(167)|haematopoietic_and_lymphoid_tissue(153)|soft_tissue(5)|lung(2)|skin(1)|ovary(1)	2828		Prostate(19;3.6e-06)				ACTCTGCGCTCGTTCGTGGTC	0.597000													12	23	---	---	---	---	0	0	0.001855	0	0
KIF9	64147	broad.mit.edu	37	3	47308733	47308733	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr3:47308733T>C	uc010hjp.2	-	7	1216	c.612A>G	c.(610-612)ATA>ATG	p.I204M	KIF9_uc003cqx.2_Missense_Mutation_p.I204M|KIF9_uc003cqy.2_Missense_Mutation_p.I204M|KIF9_uc011bat.1_RNA|KIF9_uc011bau.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	204	Kinesin-motor.				blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		TGTGGGAGGCTATAATCCTGT	0.443000													3	236	---	---	---	---	0	0	0.004672	0	0
PDHA2	5161	broad.mit.edu	37	4	96761513	96761513	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr4:96761513G>A	uc003htr.3	+	1	275	c.212G>A	c.(211-213)CGC>CAC	p.R71H		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	71					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	ACTGTTCGCCGCATGGAATTG	0.507000													4	76	---	---	---	---	0	0	0.000248	0	0
Unknown	0	broad.mit.edu	37	10	135454782	135454784	+	IGR	DEL	AAG	-	-			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr10:135454782_135454784delAAG								FRG2B (14483 upstream) : LOC653544 (35495 downstream)																							AAGTGTAGACAAGAGGGTCATCT	0.438													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80650276	80650277	+	IGR	INS	-	CAAACAAA	CAAACAAA	rs147846753	by1000genomes	TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr12:80650276_80650277insCAAACAAA								PPP1R12A (321041 upstream) : PTPRQ (187849 downstream)																							TTTCTTTACATcaaacaaacaa	0.322													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	28948128	28948129	+	5'Flank	INS	-	A	A			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr15:28948128_28948129insA	uc001zcc.2	+						uc001zcd.2_5'Flank					DQ578707																		GCGCTGGCAGCCACCCTCTGCT	0.649													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	108519282	108519283	+	IGR	INS	-	A	A			TCGA-BJ-A2N7-01A-11D-A18F-08	TCGA-BJ-A2N7-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	de442e29-fc8d-43ac-ab0f-2998b2ca7df2	f019b164-6be7-43df-b9db-6191e32ff67f	g.chr2:108519282_108519283insA								RGPD4 (10283 upstream) : SLC5A7 (83712 downstream)																							ttctgtctcagaaaaaaaaaaa	0.188													5	7	---	---	---	---					
