Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	C	C	rs11554290		TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr1:115256529T>C	uc009wgu.2	-	3	436	c.182A>G	c.(181-183)CAA>CGA	p.Q61R		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458000	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			60	109	---	---	---	---	0	0	0.00361006	0	0
CFHR5	81494	broad.mit.edu	37	1	196964999	196964999	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr1:196964999G>T	uc001gts.3	+	5	888	c.760G>T	c.(760-762)GGA>TGA	p.G254*		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	254	Sushi 4.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						ATGTGTGGATGGAGAATGGAC	0.308000													4	37	---	---	---	---	0.000602214	0.00202969	0.000602214	1	0
RET	5979	broad.mit.edu	37	10	43607566	43607566	+	Silent	SNP	C	A	A			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr10:43607566C>A	uc001jal.2	+	8	1732	c.1542C>A	c.(1540-1542)GGC>GGA	p.G514G	RET_uc001jak.1_Silent_p.G514G|RET_uc010qez.1_Silent_p.G260G	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	514	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	AGGAGGCGGGCTGCCCCCTGT	0.662000		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				3	6	---	---	---	---	0.00024832	0.00086912	0.00024832	1	0
LOC642826	642826	broad.mit.edu	37	10	47207813	47207813	+	RNA	SNP	T	C	C			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr10:47207813T>C	uc001jei.2	-	12		c.1586A>G			uc009xnf.2_Missense_Mutation_p.H132R					Homo sapiens cDNA, FLJ99065.												0						TTTACTTACATGGTTTGTACA	0.294000													4	26	---	---	---	---	0	0	0.00024832	0	0
WNT5B	81029	broad.mit.edu	37	12	1741882	1741882	+	Missense_Mutation	SNP	G	A	A	rs138238149	byFrequency	TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr12:1741882G>A	uc009zdq.2	+	3	381	c.139G>A	c.(139-141)GTG>ATG	p.V47M	WNT5B_uc001qjj.2_Missense_Mutation_p.V47M|WNT5B_uc001qjk.2_Missense_Mutation_p.V47M|WNT5B_uc001qjl.2_Missense_Mutation_p.V47M	NM_032642	NP_116031	Q9H1J7	WNT5B_HUMAN	wingless-type MMTV integration site family,	47					angiogenesis|anterior/posterior pattern formation|cell migration involved in gastrulation|cellular response to retinoic acid|chondrocyte differentiation|convergent extension involved in axis elongation|convergent extension involved in gastrulation|dorsal/ventral axis specification|endocrine pancreas development|fat cell differentiation|lens fiber cell development|negative regulation of canonical Wnt receptor signaling pathway|neuron differentiation|positive regulation of cell migration|positive regulation of fat cell differentiation|respiratory system development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	frizzled-2 binding			skin(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.00109)			TGCCCAGCCCGTGTGCAGTCA	0.567000													19	120	---	---	---	---	0	0	0.00121646	0	0
GTF2F2	2963	broad.mit.edu	37	13	45725876	45725876	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr13:45725876C>T	uc001uzw.2	+	4	374	c.214C>T	c.(214-216)CCA>TCA	p.P72S	GTF2F2_uc001uzv.2_Missense_Mutation_p.P72S	NM_004128	NP_004119	P13984	T2FB_HUMAN	general transcription factor IIF, polypeptide 2,	72					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	microtubule cytoskeleton|transcription factor TFIIF complex	ATP binding|ATP-dependent helicase activity|DNA binding|protein binding				0		Lung NSC(96;0.00115)|Prostate(109;0.00578)|Breast(139;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.133)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000647)		TGGTGGAAAACCAGCTTCAGT	0.378000													4	82	---	---	---	---	0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	15	20496765	20496765	+	RNA	SNP	G	T	T			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr15:20496765G>T	uc001ytf.1	+	6		c.818G>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		GTTTTTTATAGTGTGTATTTT	0.358000													6	28	---	---	---	---	4.096e-09	1.49094e-08	0.00116845	1	0
OR4N4	283694	broad.mit.edu	37	15	22383218	22383218	+	Missense_Mutation	SNP	T	C	C			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr15:22383218T>C	uc001yuc.1	+	7	1727	c.746T>C	c.(745-747)CTT>CCT	p.L249P	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Missense_Mutation_p.L249P	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATTATACTTCTTATGTTTGGA	0.468000													4	209	---	---	---	---	0	0	0.00024832	0	0
CDH7	1005	broad.mit.edu	37	18	63477091	63477091	+	Missense_Mutation	SNP	G	A	A			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr18:63477091G>A	uc002ljz.2	+	3	687	c.362G>A	c.(361-363)CGA>CAA	p.R121Q	CDH7_uc002lka.2_Missense_Mutation_p.R121Q|CDH7_uc002lkb.2_Missense_Mutation_p.R121Q	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	121	Extracellular (Potential).|Cadherin 1.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				TACACGCTCCGAGCTCAAGCG	0.493000													7	55	---	---	---	---	0	0	0.00198382	0	0
FKRP	79147	broad.mit.edu	37	19	47259967	47259967	+	Missense_Mutation	SNP	C	G	G			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr19:47259967C>G	uc002pfn.2	+	4	1557	c.1260C>G	c.(1258-1260)TTC>TTG	p.F420L	FKRP_uc002pfp.2_Missense_Mutation_p.F420L	NM_024301	NP_077277	Q9H9S5	FKRP_HUMAN	fukutin-related protein	420						extracellular space|Golgi apparatus|rough endoplasmic reticulum|sarcolemma	transferase activity			pancreas(1)	1		all_epithelial(76;5.08e-05)|Ovarian(192;0.0129)|all_neural(266;0.0459)|Breast(70;0.212)		OV - Ovarian serous cystadenocarcinoma(262;0.000541)|all cancers(93;0.00128)|Epithelial(262;0.0207)|GBM - Glioblastoma multiforme(486;0.0336)		TGTGGCCCTTCTACCCCCGCA	0.627000													2	13	---	---	---	---	0	0	6.4e-05	0	0
ADCY3	109	broad.mit.edu	37	2	25061434	25061434	+	Missense_Mutation	SNP	C	A	A			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr2:25061434C>A	uc002rfs.3	-	7	1612	c.1413G>T	c.(1411-1413)GAG>GAT	p.E471D	ADCY3_uc002rfr.3_Missense_Mutation_p.E104D|ADCY3_uc010ykm.1_Missense_Mutation_p.E471D	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	471	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					CATCGCCTGGCTCCACATCAA	0.577000													5	149	---	---	---	---	0.00198382	0.00644741	0.00198382	1	0
RPL23AP32	56969	broad.mit.edu	37	2	54756736	54756737	+	Missense_Mutation	DNP	TT	CC	CC			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr2:54756736_54756737TT>CC	uc010yot.1	+	1	378_379	c.254_255TT>CC	c.(253-255)TTT>TCC	p.F85S	SPTBN1_uc002rxu.2_Intron|SPTBN1_uc002rxv.1_Intron	NR_002229				SubName: Full=Putative uncharacterized protein DKFZp547I014;												0						ACCACTGAGTTTGCCATGAAGA	0.480000													3	52	---	---	---	---	0	0	6.4e-05	0	0
SCN9A	6335	broad.mit.edu	37	2	167142878	167142878	+	Missense_Mutation	SNP	C	T	T			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr2:167142878C>T	uc010fpl.2	-	11	1911	c.1570G>A	c.(1570-1572)GCA>ACA	p.A524T	uc002udp.2_Intron|SCN9A_uc002udr.1_Missense_Mutation_p.A395T|SCN9A_uc002uds.1_Missense_Mutation_p.A395T|SCN9A_uc002udt.1_Missense_Mutation_p.A395T	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	524						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTTTCATGTGCTCGCCTATGC	0.443000													12	263	---	---	---	---	0	0	0.000978159	0	0
LASS6	253782	broad.mit.edu	37	2	169547576	169547576	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr2:169547576G>C	uc002ueb.1	+	5	622	c.498G>C	c.(496-498)TGG>TGC	p.W166C	LASS6_uc002uec.1_Missense_Mutation_p.W166C	NM_203463	NP_982288	Q6ZMG9	CERS6_HUMAN	longevity assurance homolog 6	166	Cytoplasmic (Potential).|TLC.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			skin(1)	1						GGCATTGCTGGTACAACTACC	0.388000													3	96	---	---	---	---	0	0	6.4e-05	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46057497	46057497	+	Missense_Mutation	SNP	A	G	G	rs377408		TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr21:46057497A>G	uc002zfq.2	+	1	225	c.163A>G	c.(163-165)ACG>GCG	p.T55A	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	55	3.|15 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGCTGCCAGACGGCCTGTGA	0.662000													3	111	---	---	---	---	0	0	6.4e-05	0	0
FKBPL	63943	broad.mit.edu	37	6	32096729	32096729	+	Missense_Mutation	SNP	G	C	C			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr6:32096729G>C	uc003nzr.2	-	2	1099	c.829C>G	c.(829-831)CGG>GGG	p.R277G	ATF6B_uc003nzo.2_5'Flank|ATF6B_uc003nzn.2_5'Flank|ATF6B_uc011dpg.1_5'Flank|ATF6B_uc011dph.1_5'Flank	NM_022110	NP_071393	Q9UIM3	FKBPL_HUMAN	WAF-1/CIP1 stabilizing protein 39	277	TPR 2.				response to radiation	membrane|nucleus	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0						TCCAACACCCGGTCACAGCTC	0.592000													9	83	---	---	---	---	0	0	0.000274275	0	0
ZNF804B	219578	broad.mit.edu	37	7	88965206	88965206	+	Silent	SNP	A	G	G			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr7:88965206A>G	uc011khi.1	+	4	3448	c.2910A>G	c.(2908-2910)TCA>TCG	p.S970S		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	970						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TTGCACCATCAGGCTGTAACA	0.408000										HNSCC(36;0.09)			3	98	---	---	---	---	0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	9	68728848	68728848	+	RNA	SNP	A	C	C			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr9:68728848A>C	uc004aez.1	+	3		c.689A>C			uc004afa.1_RNA|uc010mnp.1_RNA					Homo sapiens cDNA, FLJ18209.																		aagaagaaaaagagcaaagat	0.204000													6	42	---	---	---	---	0	0	0.000673444	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071334	141071334	+	Missense_Mutation	SNP	A	G	G	rs4080709		TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr9:141071334A>G	uc004com.2	+	4	998	c.737A>G	c.(736-738)CAG>CGG	p.Q246R	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GCCATTTTCCAGGGTCGCATG	0.537000													3	94	---	---	---	---	0	0	0.00198382	0	0
LPAR4	2846	broad.mit.edu	37	X	78010703	78010703	+	Missense_Mutation	SNP	A	G	G			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chrX:78010703A>G	uc010nme.2	+	2	742	c.337A>G	c.(337-339)ATC>GTC	p.I113V		NM_005296	NP_005287	Q99677	LPAR4_HUMAN	lysophosphatidic acid receptor 4	113	Helical; Name=3; (Potential).					integral to plasma membrane	lipid binding|purinergic nucleotide receptor activity, G-protein coupled			ovary(3)	3						CCTCTGCAAGATCTCTGGAAC	0.428000													4	148	---	---	---	---	0	0	0.000602214	0	0
NGFRAP1	27018	broad.mit.edu	37	X	102632596	102632596	+	Silent	SNP	G	C	C			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chrX:102632596G>C	uc004eki.2	+	3	559	c.177G>C	c.(175-177)GGG>GGC	p.G59G	NGFRAP1_uc004ekh.2_Silent_p.G49G|NGFRAP1_uc004ekj.1_Silent_p.G59G	NM_206915	NP_996798	Q00994	BEX3_HUMAN	nerve growth factor receptor (TNFRSF16)	59					apoptosis|multicellular organismal development|nerve growth factor receptor signaling pathway	cytosol|nucleus	caspase regulator activity|metal ion binding				0						TCAATGATGGGATGGGTGGAG	0.502000													10	243	---	---	---	---	0	0	0.000673444	0	0
KLHL13	90293	broad.mit.edu	37	X	117053625	117053625	+	Silent	SNP	G	A	A	rs75572880		TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chrX:117053625G>A	uc004eql.2	-	4	491	c.429C>T	c.(427-429)GTC>GTT	p.V143V	KLHL13_uc004eqk.2_Silent_p.V92V|KLHL13_uc011mtn.1_Intron|KLHL13_uc011mto.1_Silent_p.V137V|KLHL13_uc011mtp.1_Silent_p.V145V|KLHL13_uc004eqm.2_Silent_p.V92V|KLHL13_uc011mtq.1_Silent_p.V127V	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	143	BTB.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TCCTTAGACCGACTTTGCTCA	0.343000													4	78	---	---	---	---	0	0	0.00116845	0	0
DOCK11	139818	broad.mit.edu	37	X	117815662	117815662	+	Silent	SNP	T	C	C			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chrX:117815662T>C	uc004eqp.2	+	51	5931	c.5868T>C	c.(5866-5868)AAT>AAC	p.N1956N	DOCK11_uc004eqq.2_Silent_p.N1735N	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1956	DHR-2.				blood coagulation	cytosol	GTP binding			ovary(3)	3						TATAGGTCAATGCTGGTCCAT	0.338000													21	106	---	---	---	---	0	0	0.00278032	0	0
LOC200030	200030	broad.mit.edu	37	1	148349431	148349432	+	5'Flank	INS	-	G	G	rs67020224		TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr1:148349431_148349432insG	uc001eqf.2	-						LOC200030_uc001eqe.2_5'Flank|LOC200030_uc001eqg.2_5'Flank|NBPF14_uc009wkf.1_5'Flank|uc001erd.3_5'Flank|uc001erc.3_5'Flank|uc010paj.1_5'Flank|uc010pav.1_5'Flank|uc010paw.1_5'Flank	NM_017940	NP_060410	Q86T75	NBPFB_HUMAN	hypothetical protein LOC55672							cytoplasm					0						GGGCTGACACTGGGGGGCCAGA	0.559													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	183573429	183573429	+	IGR	DEL	A	-	-			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr1:183573429delA								NCF2 (13383 upstream) : ARPC5 (21904 downstream)																							AGCCCTGGGGAAAAGGAGCCA	0.522													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	130262780	130262780	+	IGR	DEL	A	-	-			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr10:130262780delA								MKI67 (338312 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.000													3	5	---	---	---	---					
STT3A	3703	broad.mit.edu	37	11	125482924	125482940	+	Frame_Shift_Del	DEL	TCACCTACACCTTTCAT	-	-			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr11:125482924_125482940delTCACCTACACCTTTCAT	uc001qcd.2	+	13	1516_1532	c.1406_1422delTCACCTACACCTTTCAT	c.(1405-1422)ATCACCTACACCTTTCATfs	p.I469fs	STT3A_uc001qce.2_Frame_Shift_Del_p.I469fs|STT3A_uc010sbg.1_Frame_Shift_Del_p.I377fs|STT3A_uc009zbn.2_Frame_Shift_Del_p.I191fs	NM_152713	NP_689926	P46977	STT3A_HUMAN	integral membrane protein 1	469_474	Helical; (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity				0	all_hematologic(175;0.228)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.0919)|all_lung(97;0.0994)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.13e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0996)		TTCTTTCTCATCACCTACACCTTTCATTCAACCTGGG	0.442													8	239	---	---	---	---					
NF1P1	440225	broad.mit.edu	37	15	22146377	22146378	+	5'Flank	DEL	GT	-	-			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr15:22146377_22146378delGT	uc010tzs.1	-											Human NF1-related locus DNA in A9 mouse DNA background.												0						tTGAgtgtgggtgtgtgtgtgt	0.233													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	90160897	90160898	+	In_Frame_Ins	INS	-	GCG	GCG			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr16:90160897_90160898insGCG	uc002fqp.2	+	2	848_849	c.370_371insGCG	c.(370-372)CGC>CGCGGC	p.125_126insG	uc002fqq.2_Intron					Homo sapiens, Similar to tubulin, beta, 2, clone IMAGE:4873024, mRNA.																		CTCCTGGGAACGCGGCCCTCCC	0.728													7	29	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	22486837	22486838	+	IGR	INS	-	T	T	rs34014506		TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr19:22486837_22486838insT								ZNF676 (107084 upstream) : ZNF98 (87061 downstream)																							GTAGAAAGGAAttttttttttt	0.163													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	133018713	133018714	+	IGR	DEL	GG	-	-	rs144729406		TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr2:133018713_133018714delGG								NCRNA00164 (3171 upstream) : GPR39 (155433 downstream)																							TGGGCGGGGTGGTGGGGGGTGC	0.530													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	101967482	101967482	+	IGR	DEL	A	-	-			TCGA-BJ-A2N8-01A-11D-A18F-08	TCGA-BJ-A2N8-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	123a6737-d478-4f9a-b1a2-1302105e1c5c	2e89408c-689f-4e09-8292-78cc6a46dbc4	g.chr7:101967482delA								SH2B2 (5305 upstream) : SPDYE6 (18711 downstream)																							ACTCTGTCTCAAAAAAAAAAA	0.189													4	9	---	---	---	---					
