Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MST1P2	11209	broad.mit.edu	37	1	16974243	16974243	+	RNA	SNP	G	C	C	rs142213352	by1000genomes	TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr1:16974243G>C	uc009vow.2	+	5		c.1053G>C			MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						GATCTCAGCTGTCGCTCGGGG	0.652000													7	34	---	---	---	---	0	0	0.038147	0	0
MST1P2	11209	broad.mit.edu	37	1	16976585	16976585	+	RNA	SNP	C	T	T	rs1135350	by1000genomes	TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr1:16976585C>T	uc010och.1	+	14		c.2306C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TACGGGGGCCCACTTGCCTGC	0.567000													6	35	---	---	---	---	0	0	0.069234	0	0
FGR	2268	broad.mit.edu	37	1	27949582	27949582	+	Silent	SNP	C	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr1:27949582C>T	uc001boj.2	-	2	446	c.300G>A	c.(298-300)AAG>AAA	p.K100K	FGR_uc001bok.2_Silent_p.K100K|FGR_uc001bol.2_Silent_p.K100K|FGR_uc001bom.2_Silent_p.K100K	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	100	SH3.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		ACTTCTCGCCCTTGGTGAAGG	0.428000													9	48	---	---	---	---	0	0	0.069234	0	0
HCRTR1	3061	broad.mit.edu	37	1	32092570	32092570	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr1:32092570G>T	uc009vtx.2	+	9	1652	c.1267G>T	c.(1267-1269)GTG>TTG	p.V423L	HCRTR1_uc001btb.2_Missense_Mutation_p.V248L|HCRTR1_uc001btc.3_Intron|HCRTR1_uc001btd.2_Missense_Mutation_p.V423L|HCRTR1_uc010ogl.1_Intron	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	423	Cytoplasmic (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		CGTCACCACAGTGCTGCCCTG	0.512000													4	147	---	---	---	---	0.000602214	0.000677491	0.014758	1	0
PFKFB3	5209	broad.mit.edu	37	10	6268161	6268161	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr10:6268161A>G	uc001ije.2	+	14	1732	c.1348A>G	c.(1348-1350)AAG>GAG	p.K450E	PFKFB3_uc001ijd.2_Missense_Mutation_p.K430E|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Missense_Mutation_p.K464E|PFKFB3_uc001ijf.2_Missense_Mutation_p.K450E|PFKFB3_uc001ijg.2_RNA|PFKFB3_uc009xij.2_RNA|PFKFB3_uc009xik.2_RNA|PFKFB3_uc009xil.2_Intron	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	450	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						TTAGGATGCAAAGAAGGGACC	0.483000													4	154	---	---	---	---	0	0	0.021553	0	0
OGDHL	55753	broad.mit.edu	37	10	50952733	50952733	+	Missense_Mutation	SNP	A	C	C			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr10:50952733A>C	uc001jie.2	-	13	1837	c.1695T>G	c.(1693-1695)ATT>ATG	p.I565M	OGDHL_uc009xog.2_Missense_Mutation_p.I592M|OGDHL_uc010qgt.1_Missense_Mutation_p.I508M|OGDHL_uc010qgu.1_Missense_Mutation_p.I356M|OGDHL_uc009xoh.2_Missense_Mutation_p.I356M	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	565					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TTATATGCAGAATCTTTTTAT	0.527000													5	109	---	---	---	---	0	0	0.021553	0	0
TSPAN15	23555	broad.mit.edu	37	10	71243586	71243586	+	Missense_Mutation	SNP	T	C	C	rs140708891	byFrequency	TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr10:71243586T>C	uc001jpo.1	+	2	361	c.236T>C	c.(235-237)ATT>ACT	p.I79T		NM_012339	NP_036471	O95858	TSN15_HUMAN	transmembrane 4 superfamily member 15	79	Helical; (Potential).					integral to plasma membrane|membrane fraction					0						GTCTCCTTCATTGGTGTGCTG	0.587000													4	96	---	---	---	---	0	0	0.014758	0	0
LOC653113	653113	broad.mit.edu	37	12	8388326	8388326	+	RNA	SNP	G	C	C	rs113732517		TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr12:8388326G>C	uc010sgk.1	-	3		c.283C>G				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						CGAGCCTCCCGAGGGCTGCAC	0.577000													5	23	---	---	---	---	0	0	0.038147	0	0
LOC642846	642846	broad.mit.edu	37	12	9451397	9451397	+	Missense_Mutation	SNP	G	A	A	rs74390404	by1000genomes	TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr12:9451397G>A	uc010sgq.1	+	8	827	c.736G>A	c.(736-738)GTG>ATG	p.V246M	LOC642846_uc010sgp.1_RNA|LOC642846_uc009zgn.1_Missense_Mutation_p.V96M|LOC642846_uc001qvo.2_Missense_Mutation_p.V96M|LOC642846_uc001qvp.2_5'Flank					SubName: Full=cDNA FLJ60032, highly similar to Probable ATP-dependent RNA helicase DDX11 (EC 3.6.1.-);												0						AAATGAAGACGTGAGAAGCCT	0.537000													9	42	---	---	---	---	0	0	0.093190	0	0
TMED8	283578	broad.mit.edu	37	14	77812725	77812725	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr14:77812725C>A	uc001xto.1	-	3	294	c.294G>T	c.(292-294)TTG>TTT	p.L98F	TMED8_uc010ast.1_RNA|TMED8_uc001xtn.1_5'Flank	NM_213601	NP_998766	Q6PL24	TMED8_HUMAN	transmembrane emp24 protein transport domain	98					transport	integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0281)		CTGCAGGCAGCAAATCCTGTT	0.537000													3	65	---	---	---	---	0.004672	0.00509673	0.004672	1	0
C16orf72	29035	broad.mit.edu	37	16	9197107	9197107	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr16:9197107G>A	uc002czm.2	+	3	939	c.574G>A	c.(574-576)GCT>ACT	p.A192T		NM_014117	NP_054836	Q14CZ0	CP072_HUMAN	hypothetical protein LOC29035	192										large_intestine(1)	1						GGAAGCCATAGCTCTGCATGG	0.463000													5	53	---	---	---	---	0	0	0.021553	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333000													2	8	---	---	---	---	0	0	0.004672	0	0
TRAF4	9618	broad.mit.edu	37	17	27074944	27074944	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr17:27074944T>A	uc002hcs.2	+	3	387	c.279T>A	c.(277-279)AGT>AGA	p.S93R	TRAF4_uc002hcq.1_Missense_Mutation_p.S93R	NM_004295	NP_004286	Q9BUZ4	TRAF4_HUMAN	TNF receptor-associated factor 4	93					apoptosis|positive regulation of JNK cascade|positive regulation of protein homodimerization activity|positive regulation of protein kinase activity|regulation of apoptosis|signal transduction	cytoskeleton|nucleus|perinuclear region of cytoplasm|tight junction	DNA binding|ubiquitin-protein ligase activity|WW domain binding|zinc ion binding			upper_aerodigestive_tract(1)|lung(1)	2	Lung NSC(42;0.01)		Epithelial(11;3.26e-05)|all cancers(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.235)			GCCGCTGGAGTGGGCCACTAC	0.612000													25	28	---	---	---	---	0	0	0.091800	0	0
LILRB3	11025	broad.mit.edu	37	19	54722660	54722660	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr19:54722660C>T	uc002qef.1	-	9	1585	c.1474G>A	c.(1474-1476)GAG>AAG	p.E492K	LILRB3_uc002qee.1_Missense_Mutation_p.E492K|LILRB3_uc002qeh.1_Missense_Mutation_p.E492K|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Missense_Mutation_p.E492K|LILRA6_uc002qek.1_Missense_Mutation_p.E492K|LILRB3_uc010erh.1_Missense_Mutation_p.E509K|LILRB3_uc002qej.1_RNA|LILRA6_uc002qel.1_Missense_Mutation_p.E492K|LILRA6_uc002qem.1_RNA|LILRB3_uc002qen.1_RNA|LILRB3_uc002qeo.1_Missense_Mutation_p.E492K|LILRB3_uc002qep.1_Missense_Mutation_p.E492K|LILRB3_uc002qeq.1_Missense_Mutation_p.E492K|LILRB3_uc002qer.1_RNA|LILRB3_uc002qes.1_Missense_Mutation_p.E492K	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	492	Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TCCTTGGGCTCTGTCTCCGCA	0.577000													4	113	---	---	---	---	0	0	0.009096	0	0
CYP26B1	56603	broad.mit.edu	37	2	72362423	72362423	+	Silent	SNP	C	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr2:72362423C>T	uc002sih.1	-	3	555	c.555G>A	c.(553-555)GCG>GCA	p.A185A	CYP26B1_uc010yra.1_Silent_p.A168A|CYP26B1_uc010yrb.1_Silent_p.A110A	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	185			A -> V.		cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						TCAGCTTCTGCGCCTCCTGGT	0.622000													5	184	---	---	---	---	0	0	0.021553	0	0
NCAM2	4685	broad.mit.edu	37	21	22804492	22804492	+	Silent	SNP	C	A	A			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr21:22804492C>A	uc002yld.1	+	12	1794	c.1545C>A	c.(1543-1545)TCC>TCA	p.S515S	NCAM2_uc011acb.1_Silent_p.S373S	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	515	Fibronectin type-III 1.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		CCAAGGTTTCCTTCAACAAAC	0.453000													7	79	---	---	---	---	1.12685e-05	1.3086e-05	0.047766	1	0
TCN2	6948	broad.mit.edu	37	22	31008997	31008997	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr22:31008997A>G	uc003aip.1	+	3	553	c.395A>G	c.(394-396)AAA>AGA	p.K132R	TCN2_uc003aiq.1_Missense_Mutation_p.K128R|TCN2_uc003air.1_Intron	NM_000355	NP_000346	P20062	TCO2_HUMAN	transcobalamin II precursor	132					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular space	cobalamin binding			central_nervous_system(1)	1					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TCACAGCTCAAATGGTTCCTG	0.582000													35	31	---	---	---	---	0	0	0.050027	0	0
SDAD1	55153	broad.mit.edu	37	4	76881302	76881302	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr4:76881302T>C	uc003hje.3	-	17	1519	c.1400A>G	c.(1399-1401)TAT>TGT	p.Y467C	SDAD1_uc003hjf.3_Missense_Mutation_p.Y370C|SDAD1_uc011cbr.1_Missense_Mutation_p.Y430C	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	467					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TAATTCTCCATATTCTTGTAC	0.348000													6	67	---	---	---	---	0	0	0.021553	0	0
TIGD4	201798	broad.mit.edu	37	4	153691793	153691793	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr4:153691793C>T	uc003imy.2	-	2	1146	c.364G>A	c.(364-366)GGC>AGC	p.G122S		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	122	HTH CENPB-type.|H-T-H motif (By similarity).				regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					TCATTATGGCCCAGTTTCTGG	0.403000													4	150	---	---	---	---	0	0	0.009096	0	0
AGA	175	broad.mit.edu	37	4	178359917	178359917	+	Silent	SNP	G	A	A			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr4:178359917G>A	uc003iuu.1	-	4	551	c.489C>T	c.(487-489)TGC>TGT	p.C163C	AGA_uc003iuv.1_Silent_p.C67C|AGA_uc003iuw.2_Silent_p.C67C	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	163			C -> S (in AGU; Finnish. Most frequent mutation; >98% of Finnish AGU alleles).		asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		AATTTGGCTGGCAATTCCGAG	0.383000													3	31	---	---	---	---	0	0	0.004672	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				35	53	---	---	---	---	0	0	0.092188	0	0
EPHB6	2051	broad.mit.edu	37	7	142563827	142563827	+	Silent	SNP	C	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr7:142563827C>T	uc011kst.1	+	9	2002	c.1215C>T	c.(1213-1215)GTC>GTT	p.V405V	EPHB6_uc011ksu.1_Silent_p.V405V|EPHB6_uc003wbs.2_Silent_p.V113V|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_Silent_p.V113V|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	405	Extracellular (Potential).|Fibronectin type-III 1.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					TCTTCAATGTCGTGTGCAAGG	0.637000													13	15	---	---	---	---	0	0	0.093190	0	0
FLJ10661	286042	broad.mit.edu	37	8	8092007	8092007	+	RNA	SNP	C	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr8:8092007C>T	uc011kwt.1	+	4		c.375C>T			FLJ10661_uc010lrq.2_Intron|FLJ10661_uc003wsf.3_RNA	NR_024362				Homo sapiens cDNA FLJ60033 complete cds, highly similar to Protein FAM86A.												0						GCCCCCAGCACGAGGCTGTCC	0.438000													5	47	---	---	---	---	0	0	0.029380	0	0
RNF139	11236	broad.mit.edu	37	8	125499517	125499517	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr8:125499517A>G	uc003yrc.2	+	2	1970	c.1627A>G	c.(1627-1629)ATA>GTA	p.I543V		NM_007218	NP_009149	Q8WU17	RN139_HUMAN	ring finger protein 139	543					negative regulation of cell proliferation|regulation of protein ubiquitination	endoplasmic reticulum membrane|integral to membrane	protein binding|receptor activity|ubiquitin-protein ligase activity|zinc ion binding			kidney(1)	1	Ovarian(258;0.00438)|all_neural(195;0.0779)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.00288)			CTTACAAGAAATAAATGATGT	0.378000									Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				31	56	---	---	---	---	0	0	0.037714	0	0
CNTNAP3	79937	broad.mit.edu	37	9	39171422	39171422	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr9:39171422C>T	uc004abi.2	-	8	1516	c.1277G>A	c.(1276-1278)GGC>GAC	p.G426D	CNTNAP3_uc004abj.2_Missense_Mutation_p.G426D|CNTNAP3_uc011lqr.1_RNA|CNTNAP3_uc004abk.1_Missense_Mutation_p.G426D|CNTNAP3_uc011lqs.1_Missense_Mutation_p.G426D|CNTNAP3_uc004abl.1_Missense_Mutation_p.G338D	NM_033655	NP_387504	Q9BZ76	CNTP3_HUMAN	cell recognition molecule CASPR3 precursor	426	Extracellular (Potential).|Laminin G-like 2.				cell adhesion|cell recognition|signal transduction	extracellular region|integral to membrane|plasma membrane	receptor binding			ovary(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		TTTGAGCTTGCCATCCTTAAG	0.468000													4	145	---	---	---	---	0	0	0.009096	0	0
ZFAND5	7763	broad.mit.edu	37	9	74975033	74975033	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr9:74975033T>G	uc004aiv.2	-	3	534	c.256A>C	c.(256-258)AAA>CAA	p.K86Q	ZFAND5_uc010mox.1_5'UTR|ZFAND5_uc010moy.1_Missense_Mutation_p.K86Q|ZFAND5_uc004aix.2_Missense_Mutation_p.K86Q|ZFAND5_uc004aiw.2_Missense_Mutation_p.K86Q|ZFAND5_uc004aiy.2_Missense_Mutation_p.K86Q	NM_006007	NP_005998	O76080	ZFAN5_HUMAN	zinc finger, AN1-type domain 5	86							DNA binding|zinc ion binding				0						TACCTTGATTTTTCAGATGTG	0.393000													4	95	---	---	---	---	0	0	0.009096	0	0
PPP3R2	5535	broad.mit.edu	37	9	104357184	104357184	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr9:104357184T>A	uc004bbr.2	-	1	100	c.29A>T	c.(28-30)TAC>TTC	p.Y10F	GRIN3A_uc004bbp.1_Intron|GRIN3A_uc004bbq.1_Intron|PPP3R2_uc010mtf.1_RNA	NM_147180	NP_671709	Q96LZ3	CANB2_HUMAN	protein phosphatase 3 regulatory subunit B, beta	7							calcium ion binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)			Cyclosporine(DB00091)	CTCCGCCGGGTAACTGGCCTC	0.587000													42	68	---	---	---	---	0	0	0.104719	0	0
COL27A1	85301	broad.mit.edu	37	9	117071596	117071596	+	Silent	SNP	G	A	A			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr9:117071596G>A	uc011lxl.1	+	60	5274	c.5274G>A	c.(5272-5274)GAG>GAA	p.E1758E	COL27A1_uc004bii.2_RNA|COL27A1_uc011lxn.1_Silent_p.E73E	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1758	Fibrillar collagen NC1.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						TAAGCTCCGAGGTGACCCAGC	0.617000													109	166	---	---	---	---	0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	1	154350594	154350594	+	IGR	DEL	T	-	-			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr1:154350594delT								ATP8B2 (26815 upstream) : IL6R (27075 downstream)																							TCTTTTTTTCTTTTTTTTTTT	0.338													2	4	---	---	---	---					
KIAA1217	56243	broad.mit.edu	37	10	24822125	24822127	+	In_Frame_Del	DEL	GAA	-	-			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr10:24822125_24822127delGAA	uc001iru.3	+	16	3776_3778	c.3373_3375delGAA	c.(3373-3375)GAAdel	p.E1129del	KIAA1217_uc001irs.2_In_Frame_Del_p.E1049del|KIAA1217_uc001irt.3_In_Frame_Del_p.E1094del|KIAA1217_uc010qcy.1_In_Frame_Del_p.E1093del|KIAA1217_uc010qcz.1_In_Frame_Del_p.E1094del|KIAA1217_uc001irw.2_In_Frame_Del_p.E812del|KIAA1217_uc001irz.2_In_Frame_Del_p.E812del|KIAA1217_uc001irx.2_In_Frame_Del_p.E812del|KIAA1217_uc001iry.2_In_Frame_Del_p.E812del	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1129					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						GGATGAGGAGGAAGAAGAAGAAG	0.552													7	100	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	134206019	134206020	+	IGR	INS	-	G	G	rs142843997		TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr10:134206019_134206020insG								LRRC27 (11009 upstream) : PWWP2B (4682 downstream)																							atgatggtgatgtgataatggt	0.000													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	123384304	123384305	+	IGR	INS	-	C	C	rs12421335		TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr11:123384304_123384305insC								ASAM (318297 upstream) : GRAMD1B (12223 downstream)																							cttccttccttccttccttcct	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	63976118	63976121	+	IGR	DEL	TTCC	-	-	rs111579679		TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr13:63976118_63976121delTTCC								None (None upstream) : OR7E156P (335447 downstream)																							aatcaTGTGTttccttccttcctt	0.078													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	83420518	83420521	+	IGR	DEL	AGGA	-	-			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr13:83420518_83420521delAGGA								None (None upstream) : None (None downstream)																							aaacaaaggtaggaaggaaggaag	0.025													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	62563040	62563040	+	IGR	DEL	A	-	-			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr15:62563040delA								C2CD4B (105558 upstream) : MGC15885 (366331 downstream)																							AGGGAAAGGGAAAAAAAAAAG	0.567													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	5082697	5082697	+	IGR	DEL	C	-	-			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr17:5082697delC								USP6 (4373 upstream) : ZNF594 (134 downstream)																							CTGACCCTGGCCGGAGCCAAC	0.557													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	5620718	5620724	+	IGR	DEL	TCTTTCC	-	-	rs60705446	by1000genomes	TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr17:5620718_5620724delTCTTTCC								NLRP1 (132886 upstream) : WSCD1 (351713 downstream)																							cttccttccttctttcctccttccttc	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	184289328	184289329	+	IGR	DEL	TG	-	-			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr2:184289328_184289329delTG								NUP35 (262921 upstream) : None (None downstream)																							TGACCCATTTtgtgtgtgtgtg	0.178													2	4	---	---	---	---					
LOC442421	442421	broad.mit.edu	37	9	66499821	66499822	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-DJ-A13U-01A-11D-A10S-08	TCGA-DJ-A13U-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	5fa6f592-79f4-4ab1-88d3-ad6de13a2802	3e5c2d94-bbd8-42ba-ad64-36af735be8ef	g.chr9:66499821_66499822delTA	uc004aee.1	+	1	631_632	c.631_632delTA	c.(631-633)TATfs	p.Y211fs	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GACCACCTTCTATACAGTTATG	0.604													7	98	---	---	---	---					
