Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WDTC1	23038	broad.mit.edu	37	1	27620562	27620562	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr1:27620562C>T	uc009vst.2	+	8	1247	c.712C>T	c.(712-714)CGG>TGG	p.R238W	WDTC1_uc001bno.2_Missense_Mutation_p.R238W|WDTC1_uc001bnp.1_RNA|WDTC1_uc001bnq.2_5'Flank	NM_015023	NP_055838	Q8N5D0	WDTC1_HUMAN	WD and tetratricopeptide repeats 1	238							protein binding			ovary(1)|central_nervous_system(1)	2		all_cancers(24;3.12e-19)|all_epithelial(13;4.18e-18)|Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.00257)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0443)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;1.02e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000544)|KIRC - Kidney renal clear cell carcinoma(1967;0.00201)|STAD - Stomach adenocarcinoma(196;0.00321)|READ - Rectum adenocarcinoma(331;0.0476)		CTTCTGTGACCGGCAGAAACC	0.547													5	62	---	---	---	---	0	0	0.001168	0	0
OGDHL	55753	broad.mit.edu	37	10	50954867	50954867	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr10:50954867C>G	uc001jie.2	-	10	1367	c.1225G>C	c.(1225-1227)GAG>CAG	p.E409Q	OGDHL_uc009xog.2_Missense_Mutation_p.E436Q|OGDHL_uc010qgt.1_Missense_Mutation_p.E352Q|OGDHL_uc010qgu.1_Missense_Mutation_p.E200Q|OGDHL_uc009xoh.2_Missense_Mutation_p.E200Q	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	409					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						TGGAAGGTCTCATATACCACG	0.637													4	47	---	---	---	---	0	0	0.000248	0	0
PCSK7	9159	broad.mit.edu	37	11	117090319	117090319	+	Silent	SNP	G	A	A			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr11:117090319G>A	uc001pqr.2	-	10	1512	c.1311C>T	c.(1309-1311)TTC>TTT	p.F437F		NM_004716	NP_004707	Q16549	PCSK7_HUMAN	proprotein convertase subtilisin/kexin type 7	437	Catalytic.|Extracellular (Potential).				peptide hormone processing	integral to Golgi membrane	serine-type endopeptidase activity				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|Epithelial(105;6.71e-05)|all cancers(92;0.000537)		GGGTGGCTGTGAAGACAATGA	0.592			T	IGH@	MLCLS								3	28	---	---	---	---	0	0	0.004672	0	0
ABCA3	21	broad.mit.edu	37	16	2373655	2373655	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr16:2373655C>T	uc002cpy.1	-	7	1194	c.482G>A	c.(481-483)AGA>AAA	p.R161K	ABCA3_uc010bsk.1_Missense_Mutation_p.R161K|ABCA3_uc010bsl.1_Missense_Mutation_p.R161K|ABCA3_uc002cpz.1_Missense_Mutation_p.R161K	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	161					response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				CATGTAATTTCTCCGTGTGTA	0.493													11	422	---	---	---	---	0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	16	74425727	74425727	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr16:74425727T>C	uc010vmt.1	+	6	899	c.898T>C	c.(898-900)TGG>CGG	p.W300R						RecName: Full=Nuclear pore complex-interacting protein-like 2; Flags: Precursor;																		acccaagaggtggagggtgGA	0.363													4	57	---	---	---	---	0	0	0.001168	0	0
FLJ36000	284124	broad.mit.edu	37	17	21904139	21904139	+	RNA	SNP	T	G	G			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr17:21904139T>G	uc002gza.2	+	1		c.78T>G				NR_027084				Homo sapiens cDNA FLJ36000 fis, clone TESTI2015180.												0						ccgagcaggatgaggaaacca	0													3	70	---	---	---	---	0	0	0.000602	0	0
C17orf46	124783	broad.mit.edu	37	17	43331805	43331805	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr17:43331805G>C	uc002iis.1	-	5	1239	c.1143C>G	c.(1141-1143)ATC>ATG	p.I381M	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.I360M	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	381										large_intestine(1)|ovary(1)	2						ATTTCTCTGGGATTGTGGGGG	0.507													8	140	---	---	---	---	0	0	0.004482	0	0
SLC25A12	8604	broad.mit.edu	37	2	172641902	172641902	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr2:172641902C>T	uc002uhh.2	-	18	2008	c.1919G>A	c.(1918-1920)AGA>AAA	p.R640K	SLC25A12_uc010fqh.2_Missense_Mutation_p.R533K	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	640					gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	TGTGGCGAGTCTGTATCCACC	0.488													7	93	---	---	---	---	0	0	0.001984	0	0
STAB1	23166	broad.mit.edu	37	3	52539151	52539151	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr3:52539151G>A	uc003dej.2	+	13	1584	c.1510G>A	c.(1510-1512)GAT>AAT	p.D504N	STAB1_uc003dei.1_Missense_Mutation_p.D504N	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	504	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GACCCCTGGGGATCCCAAGGT	0.612													7	82	---	---	---	---	0	0	0.001984	0	0
PDE12	201626	broad.mit.edu	37	3	57543396	57543396	+	Silent	SNP	G	A	A	rs140975906	by1000genomes	TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr3:57543396G>A	uc003diw.3	+	1	1416	c.1290G>A	c.(1288-1290)CAG>CAA	p.Q430Q	PDE12_uc003div.2_Silent_p.Q430Q	NM_177966	NP_808881	Q6L8Q7	PDE12_HUMAN	phosphodiesterase 12	430							hydrolase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.011)|Kidney(284;0.0127)		AGGTGCTCCAGAGATCTTCTG	0.498													4	52	---	---	---	---	0	0	0.000602	0	0
TOPBP1	11073	broad.mit.edu	37	3	133358913	133358913	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr3:133358913G>T	uc003eps.2	-	13	2255	c.2123C>A	c.(2122-2124)GCA>GAA	p.A708E		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	708	BRCT 5.				DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						CCACTTCTTTGCAGCTTCATA	0.408								Other_conserved_DNA_damage_response_genes					6	43	---	---	---	---	5.18039e-06	8.14062e-06	0.003080	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				10	76	---	---	---	---	0	0	0.008291	0	0
SORBS3	10174	broad.mit.edu	37	8	22428458	22428458	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr8:22428458G>C	uc003xbv.2	+	18	1807	c.1467G>C	c.(1465-1467)GAG>GAC	p.E489D	SORBS3_uc003xbw.3_Missense_Mutation_p.E147D	NM_005775	NP_005766	O60504	VINEX_HUMAN	sorbin and SH3 domain containing 3 isoform 1	489	SH3 2.|Binds to vinculin.				muscle contraction|positive regulation of stress fiber assembly	cytoskeleton|cytosol|nucleus	protein binding|structural constituent of cytoskeleton|vinculin binding				0		Prostate(55;0.0421)|Breast(100;0.102)		BRCA - Breast invasive adenocarcinoma(99;0.00566)|Colorectal(74;0.0146)|COAD - Colon adenocarcinoma(73;0.061)		AGGTGAACGAGAACTGGTACG	0.627													8	55	---	---	---	---	0	0	0.003080	0	0
ZFAT	57623	broad.mit.edu	37	8	135649756	135649756	+	Silent	SNP	C	T	T			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr8:135649756C>T	uc003yup.2	-	3	571	c.396G>A	c.(394-396)CGG>CGA	p.R132R	ZFAT_uc003yun.2_Silent_p.R120R|ZFAT_uc003yuo.2_Silent_p.R120R|ZFAT_uc010meh.2_Silent_p.R120R|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.R120R|ZFAT_uc010mej.2_Silent_p.R132R|ZFAT_uc003yur.2_Silent_p.R120R	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	132	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			AGATGTGCTTCCGCAGCTGGC	0.542													4	50	---	---	---	---	0	0	0.000248	0	0
CTPS2	56474	broad.mit.edu	37	X	16720901	16720901	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chrX:16720901T>C	uc004cxk.2	-	2	869	c.125A>G	c.(124-126)TAT>TGT	p.Y42C	CTPS2_uc004cxl.2_Missense_Mutation_p.Y42C|CTPS2_uc004cxm.2_Missense_Mutation_p.Y42C	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	42					glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					GATGTTAATATAGGGGTCGAT	0.448													6	74	---	---	---	---	0	0	0.001168	0	0
CTPS2	56474	broad.mit.edu	37	X	16720909	16720909	+	Silent	SNP	G	A	A			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chrX:16720909G>A	uc004cxk.2	-	2	861	c.117C>T	c.(115-117)ATC>ATT	p.I39I	CTPS2_uc004cxl.2_Silent_p.I39I|CTPS2_uc004cxm.2_Silent_p.I39I	NM_001144002	NP_001137474	Q9NRF8	PYRG2_HUMAN	cytidine triphosphate synthase II	39					glutamine metabolic process|nucleobase, nucleoside and nucleotide interconversion|pyrimidine nucleotide biosynthetic process	cytosol	ATP binding|CTP synthase activity			ovary(1)	1	Hepatocellular(33;0.0997)					TATAGGGGTCGATTTTTATGG	0.458													5	71	---	---	---	---	0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	10	82095804	82095804	+	IGR	DEL	A	-	-	rs72815321	byFrequency	TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr10:82095804delA								MAT1A (46370 upstream) : DYDC1 (60 downstream)																							TCCTTAGAGGAAAAAAAAAGG	0.328													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	90378470	90378471	+	IGR	INS	-	T	T			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr10:90378470_90378471insT								LIPJ (11738 upstream) : LIPF (45623 downstream)																							CAGTTGCCAGCTTTTTTTGCCA	0.441													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	34669510	34669513	+	IGR	DEL	GATG	-	-			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr14:34669510_34669513delGATG								EGLN3 (249223 upstream) : C14orf147 (232632 downstream)																							aacagagcaagaTggatggatgga	0.000													6	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	103615613	103615613	+	IGR	DEL	C	-	-			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr14:103615613delC								TNFAIP2 (11837 upstream) : EIF5 (184880 downstream)																							aaaaaaaaaacaaaaaaaaGA	0.249													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	9250813	9250813	+	IGR	DEL	T	-	-	rs115093816	by1000genomes	TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr16:9250813delT								C16orf72 (37268 upstream) : GRIN2A (596454 downstream)																							cggagccctcttttttttttt	0.164													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	3332892	3332895	+	IGR	DEL	TTCC	-	-	rs148836368		TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr19:3332892_3332895delTTCC								CELF5 (35821 upstream) : NFIC (26721 downstream)																							cttccttcctttccttccttcctt	0.000													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	25079658	25079659	+	IGR	DEL	AA	-	-	rs151125724		TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr20:25079658_25079659delAA								VSX1 (16891 upstream) : LOC284798 (41775 downstream)																							actctgtctcaaaaaaaaaaaa	0.139													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	29449529	29449530	+	IGR	INS	-	AATT	AATT			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr20:29449529_29449530insAATT								None (None upstream) : FRG1B (162349 downstream)																							TTCTATCTTGAAATATCTTTCA	0.371													7	70	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	49467098	49467099	+	IGR	INS	-	C	C			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr22:49467098_49467099insC								FAM19A5 (319356 upstream) : C22orf34 (341077 downstream)																							cttccttccttcttccttcctc	0.074													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	34712496	34712497	+	IGR	INS	-	A	A			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr6:34712496_34712497insA								C6orf106 (47871 upstream) : SNRPC (12815 downstream)																							CAACCAAAAAGAAAAAAAaaag	0.193													7	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	64975077	64975078	+	IGR	INS	-	AGAC	AGAC			TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr7:64975077_64975078insAGAC								ZNF92 (109080 upstream) : INTS4L2 (137699 downstream)																							AGTGCACCCGAAAACAAAGATG	0.455													2	4	---	---	---	---					
SGK223	157285	broad.mit.edu	37	8	8234868	8234869	+	In_Frame_Ins	INS	-	GCCGCT	GCCGCT	rs150979349	by1000genomes	TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr8:8234868_8234869insGCCGCT	uc003wsh.3	-	2	1050_1051	c.1050_1051insAGCGGC	c.(1048-1053)insAGCGGC	p.350_351insSG		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	350_351							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						GGGCTACTGGCGCCGCTGCCGC	0.653													11	16	---	---	---	---					
OR13C5	138799	broad.mit.edu	37	9	107361899	107361902	+	5'Flank	DEL	GAAT	-	-	rs10541505		TCGA-DJ-A1QM-01A-11D-A14W-08	TCGA-DJ-A1QM-10A-01D-A14W-08									Somatic	Phase_I	Capture				Illumina GAIIx	78d419c4-d242-4240-882b-cd6b7fd46b5e	b9eed02e-175a-4e22-91d2-78ad9b5ccd0c	g.chr9:107361899_107361902delGAAT	uc011lvp.1	-							NM_001004482	NP_001004482	Q8NGS8	O13C5_HUMAN	olfactory receptor, family 13, subfamily C,						sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4						agagggaagggaatgaatgaatga	0.029													4	4	---	---	---	---					
