Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
OR2G6	391211	broad.mit.edu	37	1	248685767	248685767	+	Missense_Mutation	SNP	G	T	T			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr1:248685767G>T	uc001ien.1	+	1	820	c.820G>T	c.(820-822)GTT>TTT	p.V274F		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGGAAAGTTTGTTTCTCTTTT	0.438000													9	73	---	---	---	---	0.000442599	0.000497924	0.335167	1	0
FZD8	8325	broad.mit.edu	37	10	35930194	35930194	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr10:35930194T>C	uc001iyz.1	-	1	169	c.164A>G	c.(163-165)AAT>AGT	p.N55S		NM_031866	NP_114072	Q9H461	FZD8_HUMAN	frizzled 8 precursor	55	FZ.|Extracellular (Potential).				axonogenesis|brain development|canonical Wnt receptor signaling pathway|embryo development|gonad development|T cell differentiation in thymus|vasculature development	cell projection|Golgi apparatus|integral to membrane|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding				0						GTTGAACTGATTGGGCATGTA	0.617000													3	33	---	---	---	---	0	0	0.115264	0	0
DUSP13	51207	broad.mit.edu	37	10	76868831	76868831	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr10:76868831G>A	uc001jws.2	-	1	140	c.85C>T	c.(85-87)CGG>TGG	p.R29W	DUSP13_uc001jwu.2_5'UTR|DUSP13_uc001jww.2_Missense_Mutation_p.R29W|DUSP13_uc009xrs.2_5'UTR|DUSP13_uc001jwt.2_5'UTR|DUSP13_uc001jwv.2_5'UTR|SAMD8_uc001jwx.1_5'Flank|SAMD8_uc001jwy.1_5'Flank	NM_001007271	NP_001007272	Q6B8I1	MDSP_HUMAN	muscle-restricted dual specificity phosphatase	29						cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					TTCCCTGCCCGCAGGAGCTCC	0.642000													3	39	---	---	---	---	0	0	0.150653	0	0
MKI67	4288	broad.mit.edu	37	10	129905423	129905423	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr10:129905423T>C	uc001lke.2	-	13	4876	c.4681A>G	c.(4681-4683)AAA>GAA	p.K1561E	MKI67_uc001lkf.2_Missense_Mutation_p.K1201E|MKI67_uc009yav.1_Missense_Mutation_p.K1136E|MKI67_uc009yaw.1_Missense_Mutation_p.K711E	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1561	5.|16 X 122 AA approximate repeats.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AGGTCCAGTTTCTGCACTGGA	0.493000													17	192	---	---	---	---	0	0	0.520397	0	0
LRP5	4041	broad.mit.edu	37	11	68181159	68181159	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr11:68181159C>T	uc001ont.2	+	12	2581	c.2506C>T	c.(2506-2508)CAG>TAG	p.Q836*	LRP5_uc009ysg.2_Nonsense_Mutation_p.Q246*	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	836	LDL-receptor class B 14.|Beta-propeller 3.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						TCATGCAGGTCAGGAGCGGGT	0.607000													4	50	---	---	---	---	0	0	0.150653	0	0
PCDH9	5101	broad.mit.edu	37	13	67801027	67801027	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr13:67801027C>T	uc001vik.2	-	2	2238	c.1546G>A	c.(1546-1548)GAT>AAT	p.D516N	PCDH9_uc001vil.2_Missense_Mutation_p.D516N|PCDH9_uc010thl.1_Missense_Mutation_p.D516N|PCDH9_uc001vin.3_Missense_Mutation_p.D516N	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	516	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		CGGTCCAGATCAAAGAAGGAG	0.433000													4	80	---	---	---	---	0	0	0.150653	0	0
OR4M1	441670	broad.mit.edu	37	14	20248592	20248592	+	Silent	SNP	C	T	T			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr14:20248592C>T	uc010tku.1	+	1	111	c.111C>T	c.(109-111)TTC>TTT	p.F37F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTATTTGTTCATCCTACCAG	0.423000													14	344	---	---	---	---	0	0	0.435327	0	0
Unknown	0	broad.mit.edu	37	15	31092951	31092951	+	5'Flank	SNP	G	A	A	rs34190638	by1000genomes	TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr15:31092951G>A	uc001zfa.2	-						uc001zfb.2_RNA					DQ595055																		ACCCCTTCTGGGAGCCAGTGG	0.567000													3	9	---	---	---	---	0	0	0.115264	0	0
ZFHX3	463	broad.mit.edu	37	16	72829670	72829670	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr16:72829670T>C	uc002fck.2	-	9	7584	c.6911A>G	c.(6910-6912)CAG>CGG	p.Q2304R	ZFHX3_uc002fcl.2_Missense_Mutation_p.Q1390R	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2304					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GCCCTCTCCCTGATTCTCATA	0.443000													3	129	---	---	---	---	0	0	0.115264	0	0
MGAT5B	146664	broad.mit.edu	37	17	74878302	74878302	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr17:74878302G>A	uc002jtg.3	+	3	565	c.251G>A	c.(250-252)CGC>CAC	p.R84H	MGAT5B_uc002jth.2_Missense_Mutation_p.R84H|MGAT5B_uc002jti.2_Missense_Mutation_p.R95H			Q3V5L5	MGT5B_HUMAN	Homo sapiens GnT-IX mRNA for N-Acetylglucosaminyltransferase IX, complete cds.	84	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						ATGGTGAAGCGCATGGACGCA	0.672000													6	21	---	---	---	---	0	0	0.278610	0	0
PSG4	5672	broad.mit.edu	37	19	43702160	43702160	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr19:43702160A>G	uc002ovy.2	-	3	800	c.698T>C	c.(697-699)CTG>CCG	p.L233P	PSG6_uc010xwk.1_Missense_Mutation_p.L72P|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Intron|PSG4_uc002ovz.2_Missense_Mutation_p.L233P	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	233	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				GAGGAGATTCAGGGTGACTGG	0.527000													5	300	---	---	---	---	0	0	0.217242	0	0
RTKN	6242	broad.mit.edu	37	2	74656958	74656958	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr2:74656958A>G	uc002sle.2	-	6	869	c.752T>C	c.(751-753)GTT>GCT	p.V251A	RTKN_uc002slc.2_Missense_Mutation_p.V238A|RTKN_uc002sld.2_Missense_Mutation_p.V201A	NM_001015055	NP_001015055	Q9BST9	RTKN_HUMAN	rhotekin isoform a	251					apoptosis|regulation of anti-apoptosis|Rho protein signal transduction	intracellular	GTP binding|GTP-Rho binding|GTPase inhibitor activity			skin(1)	1						GCCTTACCCAACAACTGGGGT	0.602000													4	43	---	---	---	---	0	0	0.150653	0	0
LONRF2	164832	broad.mit.edu	37	2	100903492	100903492	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr2:100903492G>C	uc002tal.3	-	11	2594	c.1954C>G	c.(1954-1956)CTC>GTC	p.L652V	LONRF2_uc010yvs.1_RNA	NM_198461	NP_940863	Q1L5Z9	LONF2_HUMAN	LON peptidase N-terminal domain and ring finger	652	Lon.				proteolysis		ATP-dependent peptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2						GAATCGTGGAGAGCGGCAAGT	0.488000													3	35	---	---	---	---	0	0	0.115264	0	0
PTPRN	5798	broad.mit.edu	37	2	220162111	220162111	+	Silent	SNP	C	G	G			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr2:220162111C>G	uc002vkz.2	-	14	2021	c.1932G>C	c.(1930-1932)CGG>CGC	p.R644R	PTPRN_uc010zlc.1_Silent_p.R554R|PTPRN_uc002vla.2_Silent_p.R615R	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	644	Cytoplasmic (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		GACCCTCTGCCCGGTTGAACA	0.627000													6	56	---	---	---	---	0	0	0.248553	0	0
DOCK10	55619	broad.mit.edu	37	2	225739448	225739448	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr2:225739448T>C	uc010fwz.1	-	9	1191	c.952A>G	c.(952-954)ACT>GCT	p.T318A	DOCK10_uc002vob.2_Missense_Mutation_p.T312A|DOCK10_uc002vod.1_Missense_Mutation_p.T318A	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	318							GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		CATTCACAAGTTACAGAATTA	0.373000													11	114	---	---	---	---	0	0	0.411799	0	0
PIK3CB	5291	broad.mit.edu	37	3	138374244	138374244	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr3:138374244T>A	uc011bmq.1	-	22	3200	c.3200A>T	c.(3199-3201)GAC>GTC	p.D1067V	PIK3CB_uc011bmn.1_Missense_Mutation_p.D579V|PIK3CB_uc011bmo.1_Missense_Mutation_p.D518V|PIK3CB_uc011bmp.1_Missense_Mutation_p.D654V|PIK3CB_uc003est.1_RNA	NM_006219	NP_006210	P42338	PK3CB_HUMAN	catalytic phosphatidylinositol 3-kinase beta	1067	PI3K/PI4K.				activation of MAPK activity|chemotaxis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						AGATCTGTAGTCTTTCCGAAC	0.408000													5	65	---	---	---	---	0	0	0.184627	0	0
WDR49	151790	broad.mit.edu	37	3	167245799	167245799	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr3:167245799A>G	uc003fev.1	-	11	1663	c.1357T>C	c.(1357-1359)TGT>CGT	p.C453R	WDR49_uc003feu.1_Missense_Mutation_p.C278R|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	453	WD 7.									large_intestine(1)|ovary(1)|skin(1)	3						GAGTTAAGACAGTACTCCTGA	0.353000													7	37	---	---	---	---	0	0	0.278610	0	0
USP46	64854	broad.mit.edu	37	4	53492228	53492228	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr4:53492228T>C	uc003gzn.2	-	4	703	c.518A>G	c.(517-519)CAG>CGG	p.Q173R	USP46_uc003gzm.3_Missense_Mutation_p.Q166R|USP46_uc011bzr.1_Missense_Mutation_p.Q150R|USP46_uc011bzs.1_Missense_Mutation_p.Q57R	NM_022832	NP_073743	P62068	UBP46_HUMAN	ubiquitin specific peptidase 46 isoform 1	173					behavior|protein deubiquitination|regulation of synaptic transmission, GABAergic|ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(1)	1			LUSC - Lung squamous cell carcinoma(32;0.0295)			AAGCGTTCCCTGAAAAATCTC	0.383000													3	56	---	---	---	---	0	0	0.150653	0	0
SHROOM3	57619	broad.mit.edu	37	4	77700311	77700311	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr4:77700311C>T	uc011cbx.1	+	11	6925	c.5972C>T	c.(5971-5973)ACA>ATA	p.T1991I	SHROOM3_uc003hkg.2_Missense_Mutation_p.T1769I	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1991					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			ATTTTCCCAACATTAACCTCT	0.448000													4	51	---	---	---	---	0	0	0.150653	0	0
EGFLAM	133584	broad.mit.edu	37	5	38451448	38451448	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr5:38451448A>G	uc003jlc.1	+	20	2923	c.2599A>G	c.(2599-2601)AGG>GGG	p.R867G	EGFLAM_uc003jlb.1_Missense_Mutation_p.R859G|EGFLAM_uc003jle.1_Missense_Mutation_p.R625G|EGFLAM_uc003jlf.1_Missense_Mutation_p.R225G|EGFLAM_uc003jlg.1_Missense_Mutation_p.R2G	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	867	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TGTGTTCATGAGGTTTAAAAC	0.473000													3	100	---	---	---	---	0	0	0.115264	0	0
AP3B1	8546	broad.mit.edu	37	5	77452176	77452177	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr5:77452176_77452177TC>AT	uc003kfj.2	-	14	1503_1504	c.1378_1379GA>AT	c.(1378-1380)GAA>ATA	p.E460I		NM_003664	NP_003655	O00203	AP3B1_HUMAN	adaptor-related protein complex 3, beta 1	460					endocytosis|melanosome organization	clathrin coated vesicle membrane|Golgi apparatus|membrane coat	protein phosphatase binding|protein transporter activity			central_nervous_system(1)	1		all_lung(232;0.000397)|Lung NSC(167;0.00106)|Ovarian(174;0.0105)|Prostate(461;0.215)		OV - Ovarian serous cystadenocarcinoma(54;8.23e-47)|Epithelial(54;2.74e-41)|all cancers(79;4.8e-36)		AACCACACTTTCAGCAACAACT	0.297000									Hermansky-Pudlak_syndrome				7	76	---	---	---	---	0	0	0.115264	0	0
LPPR1	54886	broad.mit.edu	37	9	104071536	104071536	+	Silent	SNP	C	T	T			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr9:104071536C>T	uc004bbb.2	+	5	828	c.429C>T	c.(427-429)AAC>AAT	p.N143N	LPPR1_uc011lvi.1_Silent_p.N119N|LPPR1_uc004bbc.2_Silent_p.N143N|LPPR1_uc010mtc.2_Silent_p.N127N	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	143	Helical; (Potential).					integral to membrane	catalytic activity				0						TTTTTGTAAACGCCGGACAAG	0.418000													9	71	---	---	---	---	0	0	0.307466	0	0
ABCB7	22	broad.mit.edu	37	X	74293735	74293735	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chrX:74293735G>T	uc004eca.2	-	7	937	c.912C>A	c.(910-912)TAC>TAA	p.Y304*	ABCB7_uc004ebz.2_Nonsense_Mutation_p.Y305*|ABCB7_uc011mqn.1_Nonsense_Mutation_p.Y278*|ABCB7_uc010nls.2_Nonsense_Mutation_p.Y265*|ABCB7_uc010nlt.2_Nonsense_Mutation_p.Y264*	NM_004299	NP_004290	O75027	ABCB7_HUMAN	ATP-binding cassette, sub-family B, member 7	304	ABC transmembrane type-1.|Helical; (Potential).				cellular iron ion homeostasis	integral to membrane|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|heme transporter activity			ovary(1)	1						TGAATGCTGTGTATGTACCAA	0.373000													4	55	---	---	---	---	0.00909568	0.00992256	0.150653	1	0
Unknown	0	broad.mit.edu	37	1	248570553	248570554	+	IGR	INS	-	GTTAT	GTTAT	rs146850247	by1000genomes	TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr1:248570553_248570554insGTTAT								OR2T1 (149 upstream) : OR2T2 (45545 downstream)																							ataactccatagttatgatgtt	0.119													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	9628208	9628209	+	IGR	INS	-	A	A			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr11:9628208_9628209insA								WEE1 (16897 upstream) : SWAP70 (57419 downstream)																							CTTTTCACCATAAAAAAAAAAa	0.163													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	20416848	20416849	+	IGR	INS	-	A	A			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr17:20416848_20416849insA								LGALS9B (46000 upstream) : CCDC144NL (349861 downstream)																							CAGGCTGAAAGAAAAAAAAAAA	0.554													3	5	---	---	---	---					
POLDIP2	26073	broad.mit.edu	37	17	26684394	26684395	+	Splice_Site	INS	-	G	G	rs113730440		TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr17:26684394_26684395insG	uc002haz.2	-	2	210	c.78_splice	c.e2+1	p.W26_splice	POLDIP2_uc010wag.1_RNA|TMEM199_uc002hba.2_5'Flank|SARM1_uc010wah.1_5'Flank	NM_015584	NP_056399	Q9Y2S7	PDIP2_HUMAN	DNA polymerase delta interacting protein 2							mitochondrial nucleoid|nucleus					0	all_lung(13;0.000354)|Lung NSC(42;0.00115)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AGAGCGGCTTTGCCACCGGGCC	0.762													9	8	---	---	---	---					
INTS2	57508	broad.mit.edu	37	17	60005524	60005527	+	5'Flank	DEL	CAAG	-	-	rs3217606		TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr17:60005524_60005527delCAAG	uc002izn.2	-						INTS2_uc002izm.2_5'Flank	NM_020748	NP_065799	Q9H0H0	INT2_HUMAN	integrator complex subunit 2						snRNA processing	integral to membrane|integrator complex|nuclear membrane	protein binding			ovary(1)|lung(1)|pancreas(1)	3						TCCTTTTAGACAAGCAAGCCACTG	0.431													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	9590549	9590550	+	IGR	INS	-	A	A			TCGA-DJ-A2Q9-01A-21D-A18F-08	TCGA-DJ-A2Q9-10A-01D-A18F-08									Somatic	Phase_I	Capture				Illumina GAIIx	adf1cfbc-98f6-4cab-9dd2-adbc4b68563d	fa3be43f-26a6-4058-bf98-43f73d552719	g.chr21:9590549_9590550insA								None (None upstream) : None (None downstream)																							CCCTCaaatttaaaaaattata	0.322													3	5	---	---	---	---					
