Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CDKN2C	1031	broad.mit.edu	37	1	51439634	51439634	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr1:51439634G>A	uc001csf.2	+	3	1415	c.199G>A	c.(199-201)GAC>AAC	p.D67N	CDKN2C_uc001csg.2_Missense_Mutation_p.D67N	NM_001262	NP_001253	P42773	CDN2C_HUMAN	cyclin-dependent kinase inhibitor 2C	67					cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|regulation of cyclin-dependent protein kinase activity	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|protein kinase binding	p.0?(4)|p.?(1)		central_nervous_system(7)|haematopoietic_and_lymphoid_tissue(5)|ovary(2)|thyroid(1)|lung(1)|kidney(1)	17				GBM - Glioblastoma multiforme(3;3.61e-13)|all cancers(3;0.00151)		CGATTTGAAAGACCGAACTGG	0.448000			D		glioma|MM				Multiple_Endocrine_Neoplasia_type_1				30	50	---	---	---	---	0	0	0.000227799	0	0
ADAM15	8751	broad.mit.edu	37	1	155030334	155030334	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr1:155030334C>G	uc001fgr.1	+	14	1525	c.1424C>G	c.(1423-1425)CCG>CGG	p.P475R	ADAM15_uc001fgq.1_Missense_Mutation_p.P160R|ADAM15_uc010pet.1_Missense_Mutation_p.P459R|ADAM15_uc010peu.1_Missense_Mutation_p.P492R|ADAM15_uc001fgt.1_Missense_Mutation_p.P475R|ADAM15_uc010pev.1_Missense_Mutation_p.P485R|ADAM15_uc001fgs.1_Missense_Mutation_p.P475R|ADAM15_uc001fgu.1_Missense_Mutation_p.P475R|ADAM15_uc001fgw.1_Missense_Mutation_p.P475R|ADAM15_uc001fgv.1_Missense_Mutation_p.P475R|ADAM15_uc001fgx.1_Missense_Mutation_p.P475R|ADAM15_uc001fgz.1_RNA|ADAM15_uc001fgy.1_RNA|ADAM15_uc001fha.1_RNA|ADAM15_uc001fhb.1_5'Flank	NM_207197	NP_997080	Q13444	ADA15_HUMAN	a disintegrin and metalloproteinase domain 15	475	Disintegrin.|Extracellular (Potential).				angiogenesis|cell-matrix adhesion|collagen catabolic process|proteolysis	acrosomal vesicle|adherens junction|endomembrane system|flagellum|integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			central_nervous_system(3)|skin(2)|ovary(1)	6	all_epithelial(22;1.43e-30)|all_lung(78;6.64e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.000434)			CAGCTGCGCCCGTCTGGCTGG	0.612000													3	53	---	---	---	---	0	0	0.000602214	0	0
DSTYK	25778	broad.mit.edu	37	1	205128809	205128809	+	Splice_Site	SNP	T	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr1:205128809T>G	uc001hbw.2	-	9	2170	c.2106_splice	c.e9-1	p.R702_splice	DSTYK_uc001hbx.2_Splice_Site_p.R702_splice	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1							cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						GGCAGAGACCTGGAGGGAAGG	0.498000													8	22	---	---	---	---	0	0	0.000673444	0	0
OBSCN	84033	broad.mit.edu	37	1	228469644	228469644	+	Silent	SNP	G	C	C			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr1:228469644G>C	uc009xez.1	+	31	8252	c.8208G>C	c.(8206-8208)GTG>GTC	p.V2736V	OBSCN_uc001hsn.2_Silent_p.V2736V|OBSCN_uc001hsp.1_Silent_p.V435V|OBSCN_uc001hsq.1_5'UTR	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2736	Ig-like 27.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ATCTGCACGTGGGCATCACCA	0.622000													3	24	---	---	---	---	0	0	0.000602214	0	0
HRAS	3265	broad.mit.edu	37	11	533874	533874	+	Missense_Mutation	SNP	T	C	C	rs121913233		TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr11:533874T>C	uc001lpv.2	-	3	370	c.182A>G	c.(181-183)CAG>CGG	p.Q61R	HRAS_uc010qvw.1_Missense_Mutation_p.Q61R|HRAS_uc010qvx.1_Missense_Mutation_p.Q61R|HRAS_uc010qvy.1_RNA	NM_005343	NP_005334	P01112	RASH_HUMAN	v-Ha-ras Harvey rat sarcoma viral oncogene	61	GTP.		Q -> L (in melanoma; strongly reduced GTP hydrolysis in the presence of RAF1; increases transformation of cultured cell lines).	Q->V: Strongly increased transformation of cultured cell lines.|Q->I: Moderately increased transformation of cultured cell lines.	activation of MAPKK activity|axon guidance|blood coagulation|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|mitotic cell cycle G1/S transition checkpoint|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|Ras protein signal transduction|synaptic transmission	cytosol|Golgi membrane|plasma membrane	GTP binding|GTPase activity|protein C-terminus binding	p.Q61R(112)|p.Q61L(93)|p.Q61K(39)|p.Q61H(20)|p.Q61P(3)|p.Q61Q(1)|p.Q61E(1)		urinary_tract(174)|thyroid(155)|skin(126)|upper_aerodigestive_tract(112)|soft_tissue(37)|prostate(29)|salivary_gland(24)|cervix(23)|stomach(14)|pituitary(10)|lung(9)|haematopoietic_and_lymphoid_tissue(9)|breast(6)|testis(5)|endometrium(4)|bone(3)|large_intestine(2)|oesophagus(2)|penis(2)|kidney(1)|adrenal_gland(1)|thymus(1)	749		all_cancers(49;4.37e-09)|all_epithelial(84;2.09e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Sulindac(DB00605)	GTACTCCTCCTGGCCGGCGGT	0.597000	Q61L(KNS62_LUNG)|Q61L(NCIH1915_LUNG)|Q61L(KYSE30_OESOPHAGUS)	6	Mis		infrequent sarcomas|rare other types	rhadomyosarcoma|ganglioneuroblastoma|bladder			Costello_syndrome	HNSCC(11;0.0054)			15	42	---	---	---	---	0	0	0.000566183	0	0
PACS1	55690	broad.mit.edu	37	11	65998130	65998130	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr11:65998130C>G	uc001oha.1	+	12	1620	c.1486C>G	c.(1486-1488)CCC>GCC	p.P496A	PACS1_uc010rou.1_Missense_Mutation_p.P32A	NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	496					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						CTCTGCCTCCCCCAGGTACTG	0.577000													3	24	---	---	---	---	0	0	6.4e-05	0	0
CTSF	8722	broad.mit.edu	37	11	66333504	66333504	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr11:66333504C>G	uc001oip.2	-	6	946	c.856G>C	c.(856-858)GTC>CTC	p.V286L		NM_003793	NP_003784	Q9UBX1	CATF_HUMAN	cathepsin F precursor	286					proteolysis	lysosome	cysteine-type endopeptidase activity				0						TGGTCTTTGACTTTTGTGACA	0.592000													3	40	---	---	---	---	0	0	6.4e-05	0	0
PPFIA1	8500	broad.mit.edu	37	11	70194467	70194467	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr11:70194467C>G	uc001opo.2	+	16	2302	c.2104C>G	c.(2104-2106)CCA>GCA	p.P702A	PPFIA1_uc001opn.1_Missense_Mutation_p.P702A|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	702					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			GCGCTCCACCCCACGAAGGAT	0.597000													4	99	---	---	---	---	0	0	0.000602214	0	0
CD163L1	283316	broad.mit.edu	37	12	7520684	7520684	+	Missense_Mutation	SNP	T	A	A			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr12:7520684T>A	uc001qsy.2	-	17	4208	c.4182A>T	c.(4180-4182)AGA>AGT	p.R1394S	CD163L1_uc010sge.1_Missense_Mutation_p.R1404S	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	1394	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						GGCTCTCACCTCTGAGGGGCA	0.463000													17	45	---	---	---	---	0	0	0.000175454	0	0
CLEC7A	64581	broad.mit.edu	37	12	10275897	10275897	+	Silent	SNP	G	C	C			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr12:10275897G>C	uc001qxg.2	-	5	745	c.558C>G	c.(556-558)CCC>CCG	p.P186P	CLEC7A_uc001qxe.3_RNA|CLEC7A_uc001qxf.2_Silent_p.P140P|CLEC7A_uc001qxh.2_Intron|CLEC7A_uc001qxi.2_Intron|CLEC7A_uc001qxj.2_Silent_p.P107P|CLEC7A_uc009zhg.1_RNA|CLEC7A_uc001qxk.1_RNA|CLEC7A_uc001qxl.1_3'UTR	NM_197947	NP_922938	Q9BXN2	CLC7A_HUMAN	dendritic cell-associated C-type lectin 1	186	C-type lectin.|Extracellular (Potential).				carbohydrate mediated signaling|defense response to protozoan|inflammatory response|innate immune response|phagocytosis, recognition|T cell activation	cytoplasm|integral to membrane	metal ion binding|MHC protein binding|sugar binding			central_nervous_system(1)	1						CCTCAGTCTGGGGCCGAGAAA	0.378000													3	33	---	---	---	---	0	0	6.4e-05	0	0
EBPL	84650	broad.mit.edu	37	13	50235224	50235224	+	Silent	SNP	A	C	C			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr13:50235224A>C	uc001vdg.2	-	4	564	c.501T>G	c.(499-501)CTT>CTG	p.L167L	EBPL_uc001vdh.2_RNA|EBPL_uc001vdi.2_3'UTR	NM_032565	NP_115954	Q9BY08	EBPL_HUMAN	emopamil binding related protein, delta8-delta7	167	Helical; (Potential).				sterol metabolic process	endoplasmic reticulum membrane|integral to membrane	cholestenol delta-isomerase activity				0		Lung NSC(96;0.000468)|Breast(56;0.0011)|Prostate(109;0.00243)|Hepatocellular(98;0.0556)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;2.06e-09)		AAAACAGGTAAAGCCAACAGT	0.502000													3	39	---	---	---	---	0	0	6.4e-05	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82637069	82637069	+	RNA	SNP	C	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr15:82637069C>G	uc002bgx.2	-	1		c.63G>C						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						cccgcagcctctccagcTCCC	0.453000													2	4	---	---	---	---	0	0	0.00024832	0	0
SNX11	29916	broad.mit.edu	37	17	46189991	46189991	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr17:46189991A>G	uc002inf.1	+	4	452	c.98A>G	c.(97-99)AAC>AGC	p.N33S	SNX11_uc010wlg.1_Missense_Mutation_p.N25S|SNX11_uc010wlh.1_Missense_Mutation_p.N25S|SNX11_uc010wli.1_Missense_Mutation_p.T6A|SNX11_uc010wlj.1_Intron|SNX11_uc002ing.1_Missense_Mutation_p.N33S|SNX11_uc002inh.1_Missense_Mutation_p.N33S	NM_152244	NP_689450	Q9Y5W9	SNX11_HUMAN	sorting nexin 11	33	PX.				cell communication|protein transport	membrane	phosphatidylinositol binding				0						GGCTCCTGGAACTCTTATGTG	0.507000													4	97	---	---	---	---	0	0	0.00024832	0	0
SPPL2B	56928	broad.mit.edu	37	19	2351493	2351493	+	Silent	SNP	C	A	A			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr19:2351493C>A	uc002lvs.2	+	15	1496	c.1416C>A	c.(1414-1416)CCC>CCA	p.P472P	SPPL2B_uc002lvr.2_Silent_p.P472P	NM_152988	NP_694533	Q8TCT7	PSL1_HUMAN	signal peptide peptidase-like 2B isoform 2	472						Golgi membrane|integral to membrane	aspartic-type endopeptidase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGGCCAGCCCGCTCTCCTCT	0.682000													7	72	---	---	---	---	0.000274275	0.00742502	0.000274275	1	0
LOC96610	96610	broad.mit.edu	37	22	22664106	22664106	+	RNA	SNP	G	A	A			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr22:22664106G>A	uc011aim.1	+	30		c.1963G>A			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						TGTAGGGAATGTTTAATTCAG	0.398000													6	45	---	---	---	---	0	0	0.000442599	0	0
PLXNB2	23654	broad.mit.edu	37	22	50727260	50727260	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr22:50727260G>C	uc003bkv.3	-	5	1398	c.1292C>G	c.(1291-1293)TCT>TGT	p.S431C		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	431	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CACAAGGATAGAGTCGTACTC	0.612000													4	7	---	---	---	---	0	0	3.59834e-05	0	0
CENPE	1062	broad.mit.edu	37	4	104072434	104072434	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr4:104072434C>G	uc003hxb.1	-	26	3428	c.3338G>C	c.(3337-3339)GGA>GCA	p.G1113A	CENPE_uc003hxc.1_Missense_Mutation_p.G1088A	NM_001813	NP_001804	Q02224	CENPE_HUMAN	centromere protein E	1113	Potential.				blood coagulation|cell division|kinetochore assembly|microtubule-based movement|mitotic chromosome movement towards spindle pole|mitotic metaphase|mitotic metaphase plate congression|mitotic prometaphase|multicellular organismal development|positive regulation of protein kinase activity	condensed chromosome kinetochore|cytosol|microtubule|nucleus|spindle	ATP binding|kinetochore binding|microtubule motor activity			ovary(5)|breast(4)	9				OV - Ovarian serous cystadenocarcinoma(123;2.95e-08)		AGAAAGCTCTCCTTCTTTCTT	0.363000													4	110	---	---	---	---	0	0	0.00024832	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568536	140568536	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr5:140568536G>C	uc003liw.1	+	3	1645	c.1645G>C	c.(1645-1647)GTA>CTA	p.V549L		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	549	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTGGTGCGCGTACTGGTGCT	0.711000													5	54	---	---	---	---	0	0	0.000602214	0	0
LARS	51520	broad.mit.edu	37	5	145524092	145524092	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr5:145524092T>C	uc003lnx.1	-	17	1836	c.1598A>G	c.(1597-1599)GAT>GGT	p.D533G	LARS_uc011dbq.1_Missense_Mutation_p.D487G|LARS_uc011dbr.1_Missense_Mutation_p.D479G|LARS_uc011dbs.1_Missense_Mutation_p.D506G	NM_020117	NP_064502	Q9P2J5	SYLC_HUMAN	leucyl-tRNA synthetase	533					leucyl-tRNA aminoacylation	cytosol	ATP binding|leucine-tRNA ligase activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Leucine(DB00149)	TTCTCCATAATCCAAGTACCT	0.388000													30	56	---	---	---	---	0	0	0.000227799	0	0
TRPV5	56302	broad.mit.edu	37	7	142606711	142606711	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr7:142606711G>A	uc003wby.1	-	14	2104	c.1840C>T	c.(1840-1842)CCT>TCT	p.P614S		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	614	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CCGGAGCGAGGCCACAGGCAG	0.592000													10	30	---	---	---	---	0	0	0.00010058	0	0
ARSE	415	broad.mit.edu	37	X	2856235	2856235	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chrX:2856235C>G	uc004crc.3	-	9	1440	c.1190G>C	c.(1189-1191)GGG>GCG	p.G397A	ARSE_uc011mhi.1_Missense_Mutation_p.G343A|ARSE_uc011mhh.1_Missense_Mutation_p.G422A	NM_000047	NP_000038	P51690	ARSE_HUMAN	arylsulfatase E precursor	397					skeletal system development	Golgi stack	arylsulfatase activity|metal ion binding			ovary(1)|central_nervous_system(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGGAGCACCCCGGGCCAGCG	0.647000													3	36	---	---	---	---	0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	13	19747184	19747184	+	IGR	DEL	T	-	-			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr13:19747184delT								DKFZp686A1627 (54761 upstream) : TUBA3C (736 downstream)																							TTCTCTACCGtttttttttta	0.443													2	4	---	---	---	---					
DUOX2	50506	broad.mit.edu	37	15	45399037	45399037	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr15:45399037delA	uc010bea.2	-	15	2027	c.1824delT	c.(1822-1824)CTTfs	p.L608fs	DUOX2_uc001zun.2_Frame_Shift_Del_p.L608fs	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	608	Helical; (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		CACCTAAGGGAAGGCAGCAGA	0.582													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	78202278	78202278	+	IGR	DEL	C	-	-	rs71145877		TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr15:78202278delC								LINGO1 (213803 upstream) : LOC645752 (4281 downstream)																							TTGACAGTGGCTCCCCCAGCC	0.577													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	33371342	33371342	+	IGR	DEL	G	-	-	rs28624695		TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr16:33371342delG								SLC6A10P (474879 upstream) : MIR1826 (594166 downstream)																							acttgaacccggggggcagag	0.020													3	3	---	---	---	---					
MC3R	4159	broad.mit.edu	37	20	54823685	54823686	+	5'Flank	DEL	TC	-	-			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr20:54823685_54823686delTC	uc002xxb.2	+							NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor						activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			tgtgtgtatgtctctctctctc	0.208													7	53	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	21022401	21022401	+	IGR	DEL	G	-	-			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr22:21022401delG								MED15 (80483 upstream) : POM121L4P (21442 downstream)																							GGTGAGCGGCGAGTGCAGCAC	0.652													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	146995077	146995077	+	IGR	DEL	A	-	-			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr3:146995077delA								PLSCR5 (671074 upstream) : ZIC4 (108760 downstream)																							TCTGGACTGtaaaaaaaaaaa	0.209													2	4	---	---	---	---					
FAF2	23197	broad.mit.edu	37	5	175921248	175921248	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr5:175921248delC	uc003mej.3	+	7	686	c.633delC	c.(631-633)TGCfs	p.C211fs		NM_014613	NP_055428	Q96CS3	FAF2_HUMAN	UBX domain containing 8	211					response to unfolded protein	endoplasmic reticulum|lipid particle	protein binding			ovary(1)	1						TCTGGGCATGCTCTACAAACA	0.408													30	72	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	69876385	69876386	+	IGR	INS	-	TCT	TCT			TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chr9:69876385_69876386insTCT								LOC100133920 (211436 upstream) : FOXD4L5 (299323 downstream)																							TTCTTCTCTTCTCTTCTTGTTT	0.277													3	3	---	---	---	---					
PHKA2	5256	broad.mit.edu	37	X	18926165	18926172	+	Frame_Shift_Del	DEL	GCTGGGAC	-	-	rs138395800	byFrequency	TCGA-DJ-A2QB-01A-11D-A19J-08	TCGA-DJ-A2QB-10A-01D-A19M-08									Somatic	Phase_I	Capture				Illumina GAIIx	1584fb00-5b1c-4b75-89d8-e9504b8bc989	5e27ef92-19e3-430a-991b-53b55c88baaf	g.chrX:18926165_18926172delGCTGGGAC	uc004cyv.3	-	22	2793_2800	c.2363_2370delGTCCCAGC	c.(2362-2370)GGTCCCAGCfs	p.G788fs	PHKA2_uc004cyu.3_Frame_Shift_Del_p.G86fs|PHKA2_uc010nfe.1_5'Flank|PHKA2_uc010nff.1_5'Flank	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	788_790					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					TTGTGTCCCAGCTGGGACCCCTGCCAAG	0.524													27	142	---	---	---	---					
