Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ETNK2	55224	broad.mit.edu	37	1	204115853	204115853	+	Silent	SNP	G	A	A	rs139650333		TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr1:204115853G>A	uc001hao.3	-	3	885	c.558C>T	c.(556-558)CAC>CAT	p.H186H	ETNK2_uc010pqr.1_Silent_p.H8H|ETNK2_uc001han.3_Silent_p.H186H|ETNK2_uc010pqs.1_Intron|ETNK2_uc010pqt.1_Silent_p.H8H	NM_018208	NP_060678	Q9NVF9	EKI2_HUMAN	ethanolamine kinase 2	186							ATP binding|choline kinase activity|ethanolamine kinase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(21;0.032)|Breast(84;0.116)|all_epithelial(62;0.196)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)			TGCCGTTGGCGTGGATAGTAT	0.498000													4	114	---	---	---	---	0	0	0.009096	0	0
LOC650623	650623	broad.mit.edu	37	10	81444997	81444997	+	RNA	SNP	T	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr10:81444997T>C	uc010qlu.1	+	1		c.2267T>C				NR_027512				Homo sapiens BEN domain containing 3 pseudogene (LOC650623), non-coding RNA.												0						ACAACAATTTTCGGGCTTGCA	0.612000													2	11	---	---	---	---	0	0	0.004672	0	0
FAM55B	120406	broad.mit.edu	37	11	114569205	114569205	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr11:114569205C>G	uc009yyy.2	+	3	669	c.571C>G	c.(571-573)CTG>GTG	p.L191V		NM_182495	NP_872301	Q96DL1	FA55B_HUMAN	hypothetical protein LOC120406	191						integral to membrane				ovary(1)	1						TTCCCTGTCTCTGCTGCTCAT	0.537000													3	47	---	---	---	---	0	0	0.004672	0	0
KCNA5	3741	broad.mit.edu	37	12	5154100	5154100	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr12:5154100T>G	uc001qni.2	+	1	1016	c.787T>G	c.(787-789)TCC>GCC	p.S263A		NM_002234	NP_002225	P22460	KCNA5_HUMAN	potassium voltage-gated channel, shaker-related	263	Helical; Name=Segment S1; (Potential).					Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(2)|breast(2)	4						TATCCTCATCTCCATCATCAC	0.642000													35	258	---	---	---	---	0	0	0.104719	0	0
LOC653113	653113	broad.mit.edu	37	12	8384397	8384397	+	RNA	SNP	C	G	G			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr12:8384397C>G	uc010sgk.1	-	5		c.1391G>C				NR_024254				Homo sapiens family with sequence similarity 86, member A pseudogene (LOC653113), non-coding RNA.												0						CCCCAGGGCCCCTGCTGTCCT	0.587000													4	72	---	---	---	---	0	0	0.069234	0	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	G	G			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488000													4	71	---	---	---	---	0	0	0.014758	0	0
DHRS7	51635	broad.mit.edu	37	14	60616907	60616907	+	Splice_Site	SNP	T	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr14:60616907T>C	uc001xes.2	-	5	818	c.634_splice	c.e5-1	p.G212_splice	C14orf135_uc001xeq.2_Intron|DHRS7_uc001xet.2_Splice_Site_p.G162_splice|DHRS7_uc001xeu.2_Splice_Site_p.G212_splice	NM_016029	NP_057113	Q9Y394	DHRS7_HUMAN	dehydrogenase/reductase (SDR family) member 7								binding|oxidoreductase activity			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.121)		AAAAAAACCCTAACAGACAAA	0.333000													5	19	---	---	---	---	0	0	0.014758	0	0
MIR412	574433	broad.mit.edu	37	14	101531828	101531828	+	RNA	SNP	T	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr14:101531828T>C	hsa-mir-412|MI0002464	+			c.45T>C			uc010txp.1_5'Flank|MIR369_hsa-mir-369|MI0000777_5'Flank|MIR410_hsa-mir-410|MI0002465_5'Flank|MIR656_hsa-mir-656|MI0003678_5'Flank																	0						AAGTAATTGTTTCTAATGTAC	0.627000													5	218	---	---	---	---	0	0	0.021553	0	0
C15orf52	388115	broad.mit.edu	37	15	40627443	40627443	+	Silent	SNP	G	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr15:40627443G>A	uc001zlh.3	-	11	1537	c.1521C>T	c.(1519-1521)CCC>CCT	p.P507P	C15orf52_uc010ucn.1_Silent_p.P297P	NM_207380	NP_997263	Q6ZUT6	CO052_HUMAN	hypothetical protein LOC388115	507										large_intestine(1)	1		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;9.06e-06)|Colorectal(105;0.0107)|BRCA - Breast invasive adenocarcinoma(123;0.0505)|READ - Rectum adenocarcinoma(2;0.0649)|Lung(196;0.0781)|LUAD - Lung adenocarcinoma(183;0.0841)		CTCCTCTCGTGGGCCGGCTTC	0.682000													8	305	---	---	---	---	0	0	0.093190	0	0
ZNF263	10127	broad.mit.edu	37	16	3339612	3339612	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr16:3339612C>T	uc002cuq.2	+	6	1438	c.1106C>T	c.(1105-1107)CCG>CTG	p.P369L	ZNF263_uc010uww.1_Missense_Mutation_p.P17L|ZNF263_uc002cur.2_Missense_Mutation_p.P17L	NM_005741	NP_005732	O14978	ZN263_HUMAN	zinc finger protein 263	369					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(3)|ovary(1)	4						CTGGGGCGACCGAAGGAACTG	0.532000													33	37	---	---	---	---	0	0	0.041601	0	0
OR3A3	8392	broad.mit.edu	37	17	3324444	3324444	+	Missense_Mutation	SNP	C	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr17:3324444C>A	uc010vrd.1	+	1	583	c.583C>A	c.(583-585)CAG>AAG	p.Q195K		NM_012373	NP_036505	P47888	OR3A3_HUMAN	olfactory receptor, family 3, subfamily A,	195	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACAGCTCTTCCAGCTCTCCTG	0.552000													56	90	---	---	---	---	8.83742e-36	1.01307e-35	0.048971	1	0
ALOX12	239	broad.mit.edu	37	17	6908626	6908626	+	Silent	SNP	G	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr17:6908626G>T	uc002gdx.3	+	9	1265	c.1212G>T	c.(1210-1212)CGG>CGT	p.R404R	uc002gdy.1_Intron	NM_000697	NP_000688	P18054	LOX12_HUMAN	arachidonate 12-lipoxygenase	404	Lipoxygenase.				anti-apoptosis|cellular component movement|fatty acid oxidation|leukotriene biosynthetic process|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of cell proliferation|superoxide anion generation	cytosol|sarcolemma	arachidonate 12-lipoxygenase activity|hepoxilin-epoxide hydrolase activity|iron ion binding|lipoxygenase activity|protein binding			central_nervous_system(1)	1						CCCGGGCCCGGACCCAACTCA	0.552000											OREG0024126	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	534	---	---	---	---	0.00448238	0.004788	0.047766	1	0
KRBA2	124751	broad.mit.edu	37	17	8273458	8273458	+	Missense_Mutation	SNP	C	A	A	rs139656920	byFrequency	TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr17:8273458C>A	uc002glf.1	-	2	479	c.473G>T	c.(472-474)CGT>CTT	p.R158L	KRBA2_uc002glg.1_Missense_Mutation_p.R75L	NM_213597	NP_998762	Q6ZNG9	KRBA2_HUMAN	KRAB-A domain containing 2	158					DNA integration|regulation of transcription, DNA-dependent	intracellular	DNA binding				0						TTTTGCTGCACGGCGATAATC	0.378000													35	204	---	---	---	---	4.44401e-20	4.97306e-20	0.039052	1	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274424	39274424	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr17:39274424G>C	uc002hvz.2	-	1	183	c.144C>G	c.(142-144)AGC>AGG	p.S48R		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	48	27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].|5.		Missing (in allele KAP4.14).			keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GCCTGCAGCAGCTGGACACAC	0.672000													6	175	---	---	---	---	0	0	0.058154	0	0
EFTUD2	9343	broad.mit.edu	37	17	42941058	42941058	+	Missense_Mutation	SNP	C	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr17:42941058C>T	uc002ihn.2	-	15	1639	c.1378G>A	c.(1378-1380)GAC>AAC	p.D460N	EFTUD2_uc010wje.1_Missense_Mutation_p.D425N|EFTUD2_uc010wjf.1_Missense_Mutation_p.D450N	NM_004247	NP_004238	Q15029	U5S1_HUMAN	elongation factor Tu GTP binding domain	460						Cajal body|catalytic step 2 spliceosome|cytoplasm|nuclear speck	GTP binding|GTPase activity|protein binding			ovary(1)	1		Prostate(33;0.109)				TCGCCGAGGTCGGAGTCCACA	0.552000													4	141	---	---	---	---	0	0	0.009096	0	0
CCDC40	55036	broad.mit.edu	37	17	78073390	78073390	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr17:78073390G>A	uc010dht.2	+	20	3272	c.3245G>A	c.(3244-3246)CGC>CAC	p.R1082H	CCDC40_uc002jxm.3_Missense_Mutation_p.R865H|CCDC40_uc002jxn.3_Missense_Mutation_p.R478H|GAA_uc002jxo.2_5'Flank|GAA_uc002jxp.2_5'Flank|GAA_uc002jxq.2_5'Flank	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	1082					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			AAGGAGGGGCGCTACGTGTTC	0.602000													3	67	---	---	---	---	0	0	0.004672	0	0
ILF3	3609	broad.mit.edu	37	19	10789305	10789305	+	Silent	SNP	C	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr19:10789305C>T	uc002mpn.2	+	6	893	c.576C>T	c.(574-576)AAC>AAT	p.N192N	ILF3_uc002mpm.2_Silent_p.N192N|ILF3_uc002mpl.2_Silent_p.N192N|ILF3_uc002mpk.2_Silent_p.N192N|ILF3_uc010xli.1_Intron|ILF3_uc002mpo.2_Silent_p.N192N|ILF3_uc002mpp.2_Silent_p.N13N	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	192	DZF.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			TATCAGTCAACGACCCCCCGG	0.502000													4	154	---	---	---	---	0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	2	905904	905904	+	5'Flank	SNP	T	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr2:905904T>A	uc010ewg.2	-						uc010ewh.1_Missense_Mutation_p.E14D					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		GGTGTTTCAGTTCCTCCCGGG	0.607000													6	457	---	---	---	---	0	0	0.080935	0	0
LRP2	4036	broad.mit.edu	37	2	169995788	169995788	+	Missense_Mutation	SNP	A	G	G			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr2:169995788A>G	uc002ues.2	-	74	13574	c.13361T>C	c.(13360-13362)CTT>CCT	p.L4454P		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4454	SH3-binding (Potential).|Cytoplasmic (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	AGCAGGCAAAAGGGAGCCGGT	0.468000													4	90	---	---	---	---	0	0	0.014758	0	0
ZNF142	7701	broad.mit.edu	37	2	219503377	219503377	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr2:219503377G>C	uc002vin.2	-	10	5185	c.4749C>G	c.(4747-4749)CAC>CAG	p.H1583Q	ZNF142_uc002vil.2_Missense_Mutation_p.H1544Q|ZNF142_uc010fvt.2_Missense_Mutation_p.H1420Q|ZNF142_uc002vim.2_Missense_Mutation_p.H1420Q	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	1583	C2H2-type 29.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GCTTGCGAAGGTGGGTGCGCA	0.622000													28	61	---	---	---	---	0	0	0.034045	0	0
ECEL1	9427	broad.mit.edu	37	2	233348844	233348844	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr2:233348844G>A	uc002vsv.2	-	7	1479	c.1274C>T	c.(1273-1275)GCA>GTA	p.A425V	ECEL1_uc010fya.1_Missense_Mutation_p.A425V|ECEL1_uc010fyb.1_Missense_Mutation_p.A132V	NM_004826	NP_004817	O95672	ECEL1_HUMAN	endothelin converting enzyme-like 1	425	Lumenal (Potential).				neuropeptide signaling pathway|proteolysis	integral to plasma membrane	metal ion binding|metalloendopeptidase activity			central_nervous_system(2)	2		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000771)|Lung(119;0.00213)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CATCTCCTGTGCCAGCTCGTG	0.647000													42	67	---	---	---	---	0	0	0.048971	0	0
FRG1B	284802	broad.mit.edu	37	20	29625947	29625947	+	Missense_Mutation	SNP	T	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr20:29625947T>C	uc010ztl.1	+	2	133	c.101T>C	c.(100-102)ATT>ACT	p.I34T	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Intron					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						TCAGATGCAATTGGACCAAGA	0.343000													4	74	---	---	---	---	0	0	0.014758	0	0
COL6A6	131873	broad.mit.edu	37	3	130292898	130292898	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr3:130292898G>A	uc010htl.2	+	7	3107	c.3076G>A	c.(3076-3078)GTT>ATT	p.V1026I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1026	Nonhelical region.|VWFA 6.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TCTGGCATCTGTTGTTCAAGA	0.423000													19	20	---	---	---	---	0	0	0.049695	0	0
GPRIN3	285513	broad.mit.edu	37	4	90169984	90169984	+	Silent	SNP	G	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr4:90169984G>T	uc003hsm.1	-	2	1797	c.1278C>A	c.(1276-1278)GTC>GTA	p.V426V		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	426										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		CATTACTGGAGACCAAATTGA	0.468000													4	167	---	---	---	---	0.00909568	0.00949993	0.009096	1	0
ENPP6	133121	broad.mit.edu	37	4	185012454	185012454	+	Missense_Mutation	SNP	G	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr4:185012454G>A	uc003iwc.2	-	8	1341	c.1199C>T	c.(1198-1200)CCG>CTG	p.P400L		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	400	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		GTTGGGCAGCGGGGTGATGCC	0.587000													61	130	---	---	---	---	0	0	0.048971	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													7	32	---	---	---	---	0	0	0.029380	0	0
TAPBP	6892	broad.mit.edu	37	6	33272093	33272093	+	Silent	SNP	C	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr6:33272093C>T	uc003odx.1	-	5	1362	c.1191G>A	c.(1189-1191)GAG>GAA	p.E397E	TAPBP_uc010jus.1_Silent_p.E415E|TAPBP_uc003ody.2_3'UTR|TAPBP_uc003odz.2_Silent_p.E397E|TAPBP_uc010jut.1_Silent_p.E310E|TAPBP_uc011drc.1_Silent_p.E397E	NM_003190	NP_003181	O15533	TPSN_HUMAN	tapasin isoform 1 precursor	397	Ig-like C1-type.|Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|immune response|peptide antigen stabilization|protein complex assembly|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|MHC class I peptide loading complex|microsome	MHC class I protein binding|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|unfolded protein binding			ovary(1)	1						CCAGGGTGACCTCAGCGCTGC	0.642000													52	88	---	---	---	---	0	0	0.048971	0	0
SLC22A16	85413	broad.mit.edu	37	6	110746110	110746110	+	Missense_Mutation	SNP	G	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr6:110746110G>C	uc003puf.2	-	8	1767	c.1700C>G	c.(1699-1701)GCG>GGG	p.A567G	SLC22A16_uc003pue.2_Missense_Mutation_p.A548G	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	567					acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		GGGGGTAATCGCTTCCGTTTT	0.423000													78	113	---	---	---	---	0	0	0.048971	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				27	43	---	---	---	---	0	0	0.030593	0	0
RPL23AP53	644128	broad.mit.edu	37	8	163215	163215	+	RNA	SNP	G	A	A			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr8:163215G>A	uc010lra.2	-	4		c.918C>T			RPL23AP53_uc003woq.3_RNA|RPL23AP53_uc010lrb.2_RNA	NR_003572				Homo sapiens cDNA FLJ45055 fis, clone BRAWH3022900.												0						AGATACACATGTATTTAGAGT	0.274000													3	51	---	---	---	---	0	0	0.021553	0	0
KGFLP2	654466	broad.mit.edu	37	9	41962602	41962602	+	RNA	SNP	G	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr9:41962602G>T	uc004aca.3	-	3		c.907C>A				NR_003670				Homo sapiens cDNA FLJ76381 complete cds.												0						TTCTTTCTTTGTTTTTTTTCC	0.373000													3	34	---	---	---	---	2.56e-06	2.79814e-06	0.009096	1	0
Unknown	0	broad.mit.edu	37	MT	3347	3347	+	5'Flank	SNP	T	C	C			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chrM:3347T>C	uc004coq.3	-						uc004cos.3_RNA|uc011mfh.1_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		TGTACCCATTCTAATCGCAAT	0.328000													4	0	---	---	---	---	0	0	0.009096	0	0
FIGF	2277	broad.mit.edu	37	X	15365368	15365368	+	Missense_Mutation	SNP	T	G	G			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chrX:15365368T>G	uc004cwt.1	-	6	1365	c.856A>C	c.(856-858)AAA>CAA	p.K286Q		NM_004469	NP_004460	O43915	VEGFD_HUMAN	vascular endothelial growth factor D	286	4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.|3.				angiogenesis|cell differentiation|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of mast cell chemotaxis|vascular endothelial growth factor receptor signaling pathway	extracellular space|membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity|platelet-derived growth factor receptor binding			ovary(1)|breast(1)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					CTGCAGTTTTTGGGGTGCTGG	0.488000													3	82	---	---	---	---	0	0	0.004672	0	0
ANK3	288	broad.mit.edu	37	10	61828727	61828729	+	In_Frame_Del	DEL	GTG	-	-			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr10:61828727_61828729delGTG	uc001jky.2	-	37	12102_12104	c.11910_11912delCAC	c.(11908-11913)ACCACT>ACT	p.3970_3971TT>T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3970_3971	Thr-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						agtggtggtagtggtggtggtgg	0.291													7	160	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	49356208	49356208	+	IGR	DEL	T	-	-			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr11:49356208delT								FOLH1 (125986 upstream) : LOC440040 (223872 downstream)																							GATTCTAGTATTTTTTTTAGT	0.299													8	76	---	---	---	---					
LRCH1	23143	broad.mit.edu	37	13	47243183	47243186	+	Frame_Shift_Del	DEL	CCTG	-	-			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr13:47243183_47243186delCCTG	uc001vbj.2	+	3	707_710	c.471_474delCCTG	c.(469-474)GCCCTGfs	p.A157fs	LRCH1_uc010acp.2_Frame_Shift_Del_p.A157fs|LRCH1_uc001vbk.2_Frame_Shift_Del_p.A157fs|LRCH1_uc001vbl.3_Frame_Shift_Del_p.A157fs	NM_015116	NP_055931	Q9Y2L9	LRCH1_HUMAN	leucine-rich repeats and calponin homology (CH)	157_158	LRR 3.									ovary(1)|central_nervous_system(1)	2		all_lung(13;5.61e-07)|Lung NSC(96;0.000117)|Breast(56;0.000141)|Prostate(109;0.0029)|Lung SC(185;0.0367)|Myeloproliferative disorder(33;0.0505)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000123)		AGCTGTCCGCCCTGCCTGCCTGCC	0.436													8	316	---	---	---	---					
ARID3B	10620	broad.mit.edu	37	15	74888025	74888027	+	In_Frame_Del	DEL	CAG	-	-	rs141710149		TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr15:74888025_74888027delCAG	uc002aye.2	+	9	1797_1799	c.1596_1598delCAG	c.(1594-1599)GCCAGC>GCC	p.S538del	ARID3B_uc002ayd.2_In_Frame_Del_p.S537del|CLK3_uc002ayf.1_5'Flank	NM_006465	NP_006456	Q8IVW6	ARI3B_HUMAN	AT rich interactive domain 3B	538	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0						gcagcagcgccagcagcagcagc	0.547													7	86	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	58655794	58655796	+	IGR	DEL	TGC	-	-			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr2:58655794_58655796delTGC								FANCL (187279 upstream) : None (None downstream)																							TCTGTTCGTTtgctgctgctgct	0.404													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	108520611	108520611	+	IGR	DEL	T	-	-			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr2:108520611delT								RGPD4 (11612 upstream) : SLC5A7 (82384 downstream)																							Attttttgtcttttttttttt	0.333													6	13	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	238506848	238506855	+	IGR	DEL	TCCCCACC	-	-	rs71923545		TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr2:238506848_238506855delTCCCCACC								RAB17 (7112 upstream) : LRRFIP1 (29369 downstream)																							tcccccaccgtccccacctccccacctc	0.000													7	1	---	---	---	---					
FRG1B	284802	broad.mit.edu	37	20	29628226	29628226	+	Splice_Site	DEL	G	-	-	rs78710112	by1000genomes	TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr20:29628226delG	uc010ztl.1	+	3	171	c.139_splice	c.e3-1	p.G47_splice	FRG1B_uc002wvm.1_Splice_Site|FRG1B_uc010ztj.1_Splice_Site|FRG1B_uc010gdr.1_Splice_Site|FRG1B_uc010ztk.1_Splice_Site					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						GTTTCACTTAGGGGAAAATGG	0.318													8	195	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20151725	20151726	+	IGR	INS	-	ACC	ACC	rs138268702	by1000genomes	TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr22:20151725_20151726insACC								ZDHHC8 (16196 upstream) : LOC150197 (42129 downstream)																							ccaccatcactaccaccaccac	0.025													2	4	---	---	---	---					
EXOSC7	23016	broad.mit.edu	37	3	45017688	45017688	+	5'Flank	DEL	G	-	-			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr3:45017688delG	uc003coi.2	+						ZDHHC3_uc003cod.2_5'Flank|ZDHHC3_uc003cog.2_5'Flank|ZDHHC3_uc011bad.1_5'Flank|EXOSC7_uc003coh.1_Intron|EXOSC7_uc011bae.1_5'Flank|EXOSC7_uc010his.1_5'Flank|EXOSC7_uc003coj.2_5'Flank	NM_015004	NP_055819	Q15024	EXOS7_HUMAN	exosome component 7						exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|rRNA processing	cytosol|exosome (RNase complex)|nucleolus	3'-5'-exoribonuclease activity|protein binding|RNA binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00911)|KIRC - Kidney renal clear cell carcinoma(197;0.0509)|Kidney(197;0.064)		GACGCGGGGCGGGGGGGGGTG	0.766													4	7	---	---	---	---					
UBA3	9039	broad.mit.edu	37	3	69124604	69124605	+	Frame_Shift_Ins	INS	-	TAAG	TAAG	rs71302167		TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr3:69124604_69124605insTAAG	uc003dno.2	-	4	260_261	c.240_241insCTTA	c.(238-243)TTAGGAfs	p.L80fs	UBA3_uc003dnq.2_Frame_Shift_Ins_p.L66fs|UBA3_uc011bfy.1_5'UTR|UBA3_uc011bfz.1_Intron	NM_003968	NP_003959	Q8TBC4	UBA3_HUMAN	ubiquitin-activating enzyme 3 isoform 1	80_81					protein neddylation|proteolysis	nucleus	acid-amino acid ligase activity|ATP binding|protein heterodimerization activity			ovary(1)	1		Lung NSC(201;0.0193)|Prostate(884;0.174)		BRCA - Breast invasive adenocarcinoma(55;7.98e-05)|Epithelial(33;0.000363)|LUSC - Lung squamous cell carcinoma(21;0.012)|Lung(16;0.0191)|KIRC - Kidney renal clear cell carcinoma(39;0.206)|Kidney(39;0.241)		AGCTCACATCCTAAGCCGCCAG	0.337													8	35	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	3938949	3938950	+	IGR	INS	-	A	A	rs35844170		TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr4:3938949_3938950insA								ADRA2C (168698 upstream) : LOC348926 (4720 downstream)																							gagtctgtcggaaaaaaaaaaa	0.153													6	8	---	---	---	---					
ADH1A	124	broad.mit.edu	37	4	100212169	100212170	+	5'Flank	INS	-	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr4:100212169_100212170insT	uc003hur.1	-						uc003hum.1_Intron|ADH1A_uc011ceg.1_Intron|ADH1A_uc010ilg.1_5'Flank	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit						ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	ATAGGTATTTATTTATTTTTTT	0.396													8	32	---	---	---	---					
THBS4	7060	broad.mit.edu	37	5	79372774	79372776	+	In_Frame_Del	DEL	TGA	-	-			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr5:79372774_79372776delTGA	uc003kgh.2	+	17	2312_2314	c.1989_1991delTGA	c.(1987-1992)TGTGAT>TGT	p.D668del	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	668	TSP type-3 7.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		GTGACGAGTGTGATGATGATGAT	0.562													8	711	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	163111074	163111075	+	IGR	INS	-	T	T			TCGA-DJ-A3UO-01A-11D-A22D-08	TCGA-DJ-A3UO-10A-01D-A22D-08									Somatic	Phase_I	Capture				Illumina GAIIx	3e8599b5-687b-4133-89d7-0a11a64176bf	e56f171c-bb12-4ae8-8941-9deaaba66df8	g.chr5:163111074_163111075insT								MAT2B (164741 upstream) : None (None downstream)																							TGTCGCATTTCTTTTTtttttt	0.158													2	4	---	---	---	---					
