Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CASZ1	54897	broad.mit.edu	37	1	10714607	10714607	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr1:10714607C>T	uc001aro.2	-	10	2027	c.1707G>A	c.(1705-1707)ATG>ATA	p.M569I	CASZ1_uc001arp.1_Missense_Mutation_p.M569I|CASZ1_uc009vmx.2_Missense_Mutation_p.M593I	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	569	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		TCTCGTGGGTCATCACGTCAG	0.597000													6	286	---	---	---	---	0	0	1	0	0
TRHDE	29953	broad.mit.edu	37	12	73012793	73012793	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr12:73012793G>A	uc001sxa.2	+	13	2339	c.2309G>A	c.(2308-2310)CGC>CAC	p.R770H		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	770	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						TTACTGGACCGCATGGAAAAC	0.333000													3	68	---	---	---	---	0	0	1	0	0
C14orf21	161424	broad.mit.edu	37	14	24774190	24774190	+	Silent	SNP	G	T	T			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr14:24774190G>T	uc001wol.1	+	10	1863	c.1800G>T	c.(1798-1800)GTG>GTT	p.V600V	C14orf21_uc001wom.1_Silent_p.V151V	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	600							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		GCCACCATGTGGCTCGAAATG	0.552000													28	61	---	---	---	---	1.99505e-19	2.19456e-19	1	1	0
RRN3P3	100131998	broad.mit.edu	37	16	22448704	22448704	+	RNA	SNP	G	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr16:22448704G>A	uc002dkp.2	-	1		c.333C>T			RRN3P3_uc010vbu.1_RNA|LOC641298_uc010bxf.2_RNA	NR_027460				Homo sapiens cDNA FLJ31180 fis, clone KIDNE2000266.												0						GCTTGGCCATGTCGTGTCGGG	0.657000													4	9	---	---	---	---	0	0	1	0	0
CPSF3	51692	broad.mit.edu	37	2	9570993	9570993	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr2:9570993G>A	uc002qzo.1	+	4	360	c.325G>A	c.(325-327)GAT>AAT	p.D109N	CPSF3_uc010ewx.1_Missense_Mutation_p.D109N|CPSF3_uc002qzp.1_Missense_Mutation_p.D72N	NM_016207	NP_057291	Q9UKF6	CPSF3_HUMAN	cleavage and polyadenylation specific factor 3,	109					histone mRNA 3'-end processing|mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex|ribonucleoprotein complex	5'-3' exonuclease activity|endoribonuclease activity|metal ion binding|protein binding|RNA binding			breast(2)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;2.39e-25)|all_epithelial(98;8.75e-19)|Lung NSC(108;2.38e-06)|Ovarian(717;0.0308)		all cancers(51;2.2e-40)|Epithelial(75;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(76;4.35e-21)|STAD - Stomach adenocarcinoma(1183;0.00644)		GCTTCTTTCTGATTATGTCAA	0.348000													20	46	---	---	---	---	0	0	1	0	0
BCL11A	53335	broad.mit.edu	37	2	60688216	60688216	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr2:60688216C>T	uc002sae.1	-	4	2059	c.1831G>A	c.(1831-1833)GAG>AAG	p.E611K	BCL11A_uc002sab.2_Missense_Mutation_p.E611K|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Missense_Mutation_p.E280K|BCL11A_uc010ypj.1_Missense_Mutation_p.E577K|BCL11A_uc002sad.1_Missense_Mutation_p.E459K|BCL11A_uc002saf.1_Missense_Mutation_p.E577K	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	611					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GAGGCCGACTCGCCCGGGGAG	0.662000			T	IGH@	B-CLL								16	29	---	---	---	---	0	0	1	0	0
MIR941-2	100126339	broad.mit.edu	37	20	62551169	62551169	+	RNA	SNP	C	G	G	rs34604519		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr20:62551169C>G	hsa-mir-941-2|MI0005764	+			c.69C>G			DNAJC5_uc002yhf.2_Intron|DNAJC5_uc002yhg.1_Intron|DNAJC5_uc002yhh.2_RNA|MIR941-3_hsa-mir-941-3|MI0005765_5'Flank																	0						CGGCTGTGTGCACATGTGCCC	0.701000													4	18	---	---	---	---	0	0	1	0	0
DCP1A	55802	broad.mit.edu	37	3	53381536	53381536	+	Silent	SNP	C	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr3:53381536C>A	uc003dgs.3	-	1	102	c.9G>T	c.(7-9)GCG>GCT	p.A3A	DCP1A_uc003dgt.3_RNA	NM_018403	NP_060873	Q9NPI6	DCP1A_HUMAN	DCP1 decapping enzyme homolog A	3					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus	hydrolase activity|protein binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000164)|KIRC - Kidney renal clear cell carcinoma(197;0.00525)|Kidney(197;0.00579)|OV - Ovarian serous cystadenocarcinoma(275;0.0647)		CTCGACTCAGCGCCTCCATCT	0.617000													4	109	---	---	---	---	0.000602214	0.000602214	1	1	0
MUC13	56667	broad.mit.edu	37	3	124629312	124629312	+	Silent	SNP	G	T	T			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr3:124629312G>T	uc003ehq.1	-	10	1308	c.1284C>A	c.(1282-1284)ATC>ATA	p.I428I		NM_033049	NP_149038	Q9H3R2	MUC13_HUMAN	mucin 13, epithelial transmembrane	428	Helical; (Potential).					extracellular region|integral to membrane|plasma membrane					0						CAATGCCAGCGATGGTGCCCA	0.383000													22	103	---	---	---	---	2.47511e-08	2.63479e-08	1	1	0
CHST2	9435	broad.mit.edu	37	3	142841171	142841171	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr3:142841171G>A	uc003evm.2	+	2	2402	c.1513G>A	c.(1513-1515)GTC>ATC	p.V505I		NM_004267	NP_004258	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O)	505	Lumenal (Potential).				inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity			ovary(3)	3						GCCCATGGCCGTCCTGGGCTA	0.607000													4	93	---	---	---	---	0	0	1	0	0
RBM47	54502	broad.mit.edu	37	4	40440487	40440487	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr4:40440487G>A	uc003gvc.2	-	4	1134	c.424C>T	c.(424-426)CTC>TTC	p.L142F	RBM47_uc003gvd.2_Missense_Mutation_p.L142F|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Missense_Mutation_p.L104F|RBM47_uc003gvg.1_Missense_Mutation_p.L142F	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	142	RRM 1.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CACACGCCGAGCAGGCGGCCC	0.622000													3	63	---	---	---	---	0	0	1	0	0
TRIM36	55521	broad.mit.edu	37	5	114482788	114482788	+	Missense_Mutation	SNP	G	T	T			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr5:114482788G>T	uc003kqs.2	-	3	1111	c.602C>A	c.(601-603)CCA>CAA	p.P201Q	TRIM36_uc011cwc.1_Missense_Mutation_p.P189Q|TRIM36_uc003kqt.2_Missense_Mutation_p.P46Q	NM_018700	NP_061170	Q9NQ86	TRI36_HUMAN	tripartite motif-containing 36 isoform 1	201						acrosomal vesicle|cytoskeleton	ligase activity|zinc ion binding			ovary(4)|lung(2)|breast(2)	8		all_cancers(142;0.00133)|all_epithelial(76;2.41e-05)|Prostate(80;0.00955)|Ovarian(225;0.0443)|Breast(839;0.195)		OV - Ovarian serous cystadenocarcinoma(64;3.62e-08)|Epithelial(69;7.69e-08)|all cancers(49;9.33e-06)		GTTAGTAGTTGGACCAACATA	0.328000													15	29	---	---	---	---	3.27435e-08	3.37668e-08	1	1	0
RAPGEF6	51735	broad.mit.edu	37	5	130769300	130769300	+	Missense_Mutation	SNP	T	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr5:130769300T>A	uc003kvn.1	-	25	4003	c.3797A>T	c.(3796-3798)CAT>CTT	p.H1266L	RAPGEF6_uc003kvp.1_Missense_Mutation_p.H1316L|RAPGEF6_uc003kvo.1_Missense_Mutation_p.H1279L|RAPGEF6_uc010jdi.1_Missense_Mutation_p.H1274L|RAPGEF6_uc010jdj.1_Missense_Mutation_p.H1274L|RAPGEF6_uc003kvm.1_Missense_Mutation_p.H189L	NM_016340	NP_057424	Q8TEU7	RPGF6_HUMAN	PDZ domain-containing guanine nucleotide	1266	Ser-rich.				Ras protein signal transduction|regulation of GTPase activity|regulation of small GTPase mediated signal transduction	cytoplasm|plasma membrane	GTP-dependent protein binding|guanyl-nucleotide exchange factor activity|Ras GTPase binding			ovary(1)|lung(1)|central_nervous_system(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0721)		AATCTCACTATGGCTGGAGTC	0.448000													32	62	---	---	---	---	0	0	1	0	0
ZPBP	11055	broad.mit.edu	37	7	50057890	50057890	+	Silent	SNP	T	C	C			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr7:50057890T>C	uc003tou.2	-	6	799	c.729A>G	c.(727-729)AAA>AAG	p.K243K	ZPBP_uc011kci.1_Silent_p.K169K|ZPBP_uc010kyw.2_Silent_p.K242K	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	243					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					GCTTGGGTCCTTTTTCAGTGT	0.294000													3	55	---	---	---	---	0	0	1	0	0
GOT1L1	137362	broad.mit.edu	37	8	37795175	37795175	+	Silent	SNP	G	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr8:37795175G>A	uc011lbj.1	-	3	490	c.390C>T	c.(388-390)TAC>TAT	p.Y130Y		NM_152413	NP_689626	Q8NHS2	AATC2_HUMAN	glutamic-oxaloacetic transaminase 1-like 1	130					biosynthetic process|cellular amino acid metabolic process	cytoplasm	pyridoxal phosphate binding|transaminase activity			ovary(1)	1	Colorectal(12;0.00627)	Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;1.37e-11)			AAGAGATGATGTAAACTATAC	0.498000													10	14	---	---	---	---	0	0	1	0	0
PGM5	5239	broad.mit.edu	37	9	70999448	70999448	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr9:70999448A>G	uc004agr.2	+	3	788	c.559A>G	c.(559-561)AAA>GAA	p.K187E		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	187					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						AAACAAATTCAAACCATTCAG	0.378000													27	49	---	---	---	---	0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107812034	107812034	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chrX:107812034G>A	uc004enz.1	+	6	569	c.367G>A	c.(367-369)GGA>AGA	p.G123R	COL4A5_uc011mso.1_Missense_Mutation_p.G123R	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	123	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AGGTATTCCCGGATGCAATGG	0.383000									Alport_syndrome_with_Diffuse_Leiomyomatosis				55	104	---	---	---	---	0	0	1	0	0
ODZ1	10178	broad.mit.edu	37	X	123556255	123556255	+	Silent	SNP	G	C	C			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chrX:123556255G>C	uc004euj.2	-	23	4381	c.4317C>G	c.(4315-4317)CTC>CTG	p.L1439L	ODZ1_uc011muj.1_Silent_p.L1445L|ODZ1_uc010nqy.2_Silent_p.L1446L	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1439	NHL 4.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CAGCTATGAAGAGCAGCCCGC	0.537000													6	209	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	1	232473455	232473455	+	IGR	DEL	C	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr1:232473455delC								DISC1 (296439 upstream) : SIPA1L2 (60259 downstream)																							cctcagaatgccacaggatcc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384710	42384710	+	IGR	DEL	T	-	-	rs151222414		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr10:42384710delT								None (None upstream) : LOC441666 (442605 downstream)																							ttgaacggaatcgaatggaat	0.000													10	702	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42384716	42384716	+	IGR	DEL	G	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr10:42384716delG								None (None upstream) : LOC441666 (442599 downstream)																							ggaatcgaatggaatcatcat	0.000													15	723	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													8	125	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385728	42385743	+	IGR	DEL	AATCATCATCAAATCA	-	-	rs67183761		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr10:42385728_42385743delAATCATCATCAAATCA								None (None upstream) : LOC441666 (441572 downstream)																							cattaaatggaatcatcatcaaatcaaatctaatgg	0.042													8	72	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													11	1991	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42400228	42400228	+	IGR	DEL	A	-	-	rs66504919		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr10:42400228delA								None (None upstream) : LOC441666 (427087 downstream)																							ccaatggtagaaaaggaaata	0.000													11	200	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42599948	42599949	+	IGR	INS	-	TCA	TCA	rs12146204		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr10:42599948_42599949insTCA								None (None upstream) : LOC441666 (227366 downstream)																							tggaatcatctaatggaatgga	0.000													13	1150	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	115494082	115494083	+	IGR	DEL	TG	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr11:115494082_115494083delTG								CADM1 (118841 upstream) : None (None downstream)																							CAGCAGCTCTTGTACCCACCGT	0.649													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	128022835	128022838	+	IGR	DEL	GAGG	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr11:128022835_128022838delGAGG								None (None upstream) : ETS1 (305818 downstream)																							aggagggagagagggaggaaggag	0.010													4	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	54370823	54370825	+	IGR	DEL	GGA	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr16:54370823_54370825delGGA								IRX3 (50445 upstream) : IRX5 (594286 downstream)																							aggaggagatggaggaggaggag	0.222													2	4	---	---	---	---					
FOXF1	2294	broad.mit.edu	37	16	86544094	86544096	+	5'Flank	DEL	TCC	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr16:86544094_86544096delTCC	uc002fjl.2	+						uc002fjk.1_5'Flank	NM_001451	NP_001442	Q12946	FOXF1_HUMAN	forkhead box F1						branching involved in open tracheal system development|cardiac left ventricle morphogenesis|embryonic ectodermal digestive tract morphogenesis|endocardial cushion development|in utero embryonic development|lung vasculature development|midgut development|pancreas development|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|ureter development|venous blood vessel development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0						gtcgtcctcttcctcctcctcct	0.389													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	22253249	22253249	+	IGR	DEL	C	-	-	rs140540869		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr17:22253249delC								FLJ36000 (340179 upstream) : None (None downstream)																							ttgaacctttctttgatagtt	0.000													8	644	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	41796307	41796308	+	IGR	DEL	TT	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr17:41796307_41796308delTT								MEOX1 (57045 upstream) : SOST (34791 downstream)																							GACAACAttctttttttttttt	0.223													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	67761604	67761604	+	IGR	DEL	T	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr17:67761604delT								MAP2K6 (223142 upstream) : KCNJ16 (309822 downstream)																							ctcctcctcctcctcccctcc	0.045													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27736453	27736453	+	IGR	DEL	T	-	-	rs4567863		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr19:27736453delT								None (None upstream) : LOC148189 (544949 downstream)																							tggaaacgggtttttttcttg	0.000													9	327	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	197463268	197463269	+	IGR	INS	-	G	G			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr2:197463268_197463269insG								HECW2 (5933 upstream) : CCDC150 (41087 downstream)																							ggggaggggatggggagaggga	0.168													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	220549300	220549300	+	IGR	DEL	T	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr2:220549300delT								SLC4A3 (42599 upstream) : None (None downstream)																							TAATTGTCACTTTTTTTTTTT	0.388													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	52557949	52557950	+	IGR	INS	-	TT	TT	rs72548465	by1000genomes	TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr20:52557949_52557950insTT								SUMO1P1 (65701 upstream) : BCAS1 (2129 downstream)																							gtgtgtgtgtgtgtgtgtgcgc	0.396													5	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	44757425	44757426	+	IGR	INS	-	CACCAT	CACCAT			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr21:44757425_44757426insCACCAT								CRYAA (164512 upstream) : SIK1 (76972 downstream)																							accaccatcaccatcaccacca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	22	20150437	20150439	+	IGR	DEL	ACT	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr22:20150437_20150439delACT								ZDHHC8 (14908 upstream) : LOC150197 (43416 downstream)																							caccaccatcactaccaccacca	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	129242513	129242515	+	IGR	DEL	GAG	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr3:129242513_129242515delGAG								IFT122 (3323 upstream) : RHO (4967 downstream)																							AGCCAaggaagaggaggaggagg	0.473													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	194712128	194712130	+	IGR	DEL	TCC	-	-	rs9838410		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr3:194712128_194712130delTCC								FAM43A (302364 upstream) : C3orf21 (76885 downstream)																							ctcctcctcttcctcctcctcct	0.172													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	196281024	196281024	+	IGR	DEL	T	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr3:196281024delT								C3orf43 (38787 upstream) : WDR53 (37 downstream)																							AACCAGGAGCTTTTTTTTTTA	0.254													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	41367352	41367357	+	IGR	DEL	TCCTCT	-	-	rs9471590		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr6:41367352_41367357delTCCTCT								NCR2 (48727 upstream) : FOXP4 (146807 downstream)																							ctcctcctcctcctcttcttcttcct	0.000													3	3	---	---	---	---					
SFRP1	6422	broad.mit.edu	37	8	41166638	41166640	+	In_Frame_Del	DEL	GCT	-	-	rs3055861		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr8:41166638_41166640delGCT	uc003xnt.2	-	1	341_343	c.39_41delAGC	c.(37-42)GCAGCC>GCC	p.13_14AA>A		NM_003012	NP_003003	Q8N474	SFRP1_HUMAN	secreted frizzled-related protein 1 precursor	13_14				Missing (in Ref. 1 and 3).	brain development|canonical Wnt receptor signaling pathway|cellular response to BMP stimulus|cellular response to estradiol stimulus|cellular response to fibroblast growth factor stimulus|cellular response to heparin|cellular response to hypoxia|cellular response to interleukin-1|cellular response to prostaglandin E stimulus|cellular response to starvation|cellular response to transforming growth factor beta stimulus|cellular response to tumor necrosis factor|cellular response to vitamin D|DNA fragmentation involved in apoptotic nuclear change|dorsal/ventral axis specification|hemopoietic progenitor cell differentiation|hemopoietic stem cell differentiation|menstrual cycle phase|negative regulation of androgen receptor signaling pathway|negative regulation of B cell differentiation|negative regulation of bone remodeling|negative regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cysteine-type endopeptidase activity|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast apoptosis|negative regulation of fibroblast proliferation|negative regulation of insulin secretion|negative regulation of ossification|negative regulation of osteoblast proliferation|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|osteoblast differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell growth|positive regulation of epithelial cell proliferation|positive regulation of fat cell differentiation|positive regulation of fibroblast apoptosis|positive regulation of focal adhesion assembly|positive regulation of non-canonical Wnt receptor signaling pathway|positive regulation of Rac GTPase activity|positive regulation of smoothened signaling pathway|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|regulation of angiogenesis|regulation of cell cycle process|response to drug|response to organic cyclic compound|vasculature development	cell surface|cytosol|extracellular space|plasma membrane|proteinaceous extracellular matrix	cysteine-type endopeptidase activity|drug binding|frizzled binding|heparin binding|identical protein binding|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1	Breast(1;9.19e-13)|Ovarian(28;0.00769)|Colorectal(14;0.0305)|Lung SC(25;0.211)	all_lung(54;0.0034)|Lung NSC(58;0.0134)|Hepatocellular(245;0.023)|Esophageal squamous(32;0.0559)	BRCA - Breast invasive adenocarcinoma(1;1.11e-10)|LUSC - Lung squamous cell carcinoma(45;0.00894)|COAD - Colon adenocarcinoma(11;0.0174)			CACGCCCAGGGCTGCCCCGCGGC	0.764													5	1	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	123401537	123401538	+	IGR	INS	-	G	G	rs148560049	by1000genomes	TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr8:123401537_123401538insG								HAS2AS (744604 upstream) : ZHX2 (392363 downstream)																							tgggaaggggagggggaagagg	0.000													5	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	132172613	132172615	+	IGR	DEL	CAT	-	-			TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chr9:132172613_132172615delCAT								C9orf106 (87731 upstream) : C9orf50 (201891 downstream)																							tcaccaccaccatcaacatcacc	0.049													8	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	15258183	15258183	+	IGR	DEL	G	-	-	rs113465164		TCGA-E3-A3E0-01A-11D-A20C-08	TCGA-E3-A3E0-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	bc913911-8fc0-4cd6-8ba0-ebdb9cc664d1	6928cbfc-6138-441b-bc97-62a73788ef08	g.chrX:15258183delG								MOSPD2 (318728 upstream) : ASB9 (3928 downstream)																							GGGCGGGGGAGGGGGGGCACA	0.174													5	4	---	---	---	---					
