Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CSMD2	114784	broad.mit.edu	37	1	34037304	34037304	+	Silent	SNP	A	G	G			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:34037304A>G	uc001bxn.1	-	52	7820	c.7791T>C	c.(7789-7791)AGT>AGC	p.S2597S	CSMD2_uc001bxm.1_Silent_p.S2595S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2597	Sushi 16.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CGCTGATGCTACTGACATCAG	0.473000													18	45	---	---	---	---	0	0	0.014323	0	0
MIR760	100126348	broad.mit.edu	37	1	94312391	94312391	+	RNA	SNP	G	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:94312391G>A	hsa-mir-760|MI0005567	+			c.4G>A			BCAR3_uc001dqb.2_Intron																	0						GGCGCGGGGCGCGTCGCCCCC	0.597000													2	1	---	---	---	---	0	0	0.009096	0	0
CCDC15	80071	broad.mit.edu	37	11	124857495	124857495	+	Missense_Mutation	SNP	A	C	C	rs113451248		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr11:124857495A>C	uc001qbm.3	+	8	1632	c.1373A>C	c.(1372-1374)CAC>CCC	p.H458P		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	458						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCACAAAGACCAA	0.418000													3	54	---	---	---	---	0	0	0.004672	0	0
MYH6	4624	broad.mit.edu	37	14	23866789	23866789	+	Missense_Mutation	SNP	T	C	C			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr14:23866789T>C	uc001wjv.2	-	16	1992	c.1925A>G	c.(1924-1926)AAG>AGG	p.K642R		NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	642	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		GGATGAGCCCTTTTTCTTGCC	0.448000													3	44	---	---	---	---	0	0	0.009096	0	0
FBXO47	494188	broad.mit.edu	37	17	37101328	37101328	+	Missense_Mutation	SNP	A	C	C			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr17:37101328A>C	uc002hrc.2	-	7	878	c.678T>G	c.(676-678)CAT>CAG	p.H226Q		NM_001008777	NP_001008777	Q5MNV8	FBX47_HUMAN	F-box protein 47	226											0						GATGTGTCCAATGATCAAGGA	0.388000													28	45	---	---	---	---	0	0	0.050027	0	0
COL5A3	50509	broad.mit.edu	37	19	10114384	10114384	+	Missense_Mutation	SNP	G	C	C			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr19:10114384G>C	uc002mmq.1	-	6	792	c.706C>G	c.(706-708)CAG>GAG	p.Q236E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	236	Nonhelical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GGTTCACCCTGGGGAGCCTGG	0.607000													4	42	---	---	---	---	0	0	0.021553	0	0
ZNF845	91664	broad.mit.edu	37	19	53855197	53855197	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr19:53855197G>A	uc010ydv.1	+	4	1386	c.1269G>A	c.(1267-1269)ATG>ATA	p.M423I	ZNF845_uc010ydw.1_Missense_Mutation_p.M423I	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	423	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCAGTCAGATGTCATCCCTTG	0.413000													7	110	---	---	---	---	0	0	0.047766	0	0
SH2D6	284948	broad.mit.edu	37	2	85663670	85663670	+	Missense_Mutation	SNP	G	C	C			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr2:85663670G>C	uc002spq.2	+	4	654	c.493G>C	c.(493-495)GAA>CAA	p.E165Q	SH2D6_uc002spo.2_RNA|SH2D6_uc002spp.2_RNA	NM_198482	NP_940884	Q7Z4S9	SH2D6_HUMAN	SH2 domain containing 6	165	SH2.									central_nervous_system(1)	1						CGGCAGCCGGGAACTCACCTG	0.647000													14	61	---	---	---	---	0	0	0.038395	0	0
AQP12B	653437	broad.mit.edu	37	2	241621918	241621918	+	Silent	SNP	G	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr2:241621918G>A	uc010fzj.2	-	1	400	c.337C>T	c.(337-339)CTG>TTG	p.L113L	AQP12B_uc002vzt.2_RNA	NM_001102467	NP_001095937	A6NM10	AQ12B_HUMAN	aquaporin 12B	101	Helical; Name=3; (Potential).					integral to membrane	transporter activity				0		all_epithelial(40;1.71e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		GCCAGCTTCAGCAGCGTGCCA	0.697000													4	39	---	---	---	---	0	0	0.009096	0	0
STXBP5L	9515	broad.mit.edu	37	3	120941872	120941872	+	Missense_Mutation	SNP	G	C	C			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr3:120941872G>C	uc003eec.3	+	11	1119	c.979G>C	c.(979-981)GGT>CGT	p.G327R	STXBP5L_uc011bji.1_Missense_Mutation_p.G327R	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	327	WD 6.				exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		AATATTCTCTGGTGGGCTGTC	0.363000													7	84	---	---	---	---	0	0	0.008291	0	0
MCM9	254394	broad.mit.edu	37	6	119245206	119245206	+	Missense_Mutation	SNP	T	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr6:119245206T>A	uc003pyh.2	-	3	654	c.391A>T	c.(391-393)ATT>TTT	p.I131F		NM_153255	NP_694987	Q9NXL9	MCM9_HUMAN	minichromosome maintenance complex component 9	131					DNA replication		ATP binding|DNA binding|nucleoside-triphosphatase activity			ovary(1)	1		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.194)		CTTGTTCGAATCACTGTCCCA	0.448000													6	285	---	---	---	---	0	0	0.047766	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				24	40	---	---	---	---	0	0	0.037714	0	0
Unknown	0	broad.mit.edu	37	9	66457980	66457980	+	5'Flank	SNP	A	G	G			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr9:66457980A>G	uc010mng.1	-						uc004aeb.2_5'UTR|uc004aec.2_Intron					Homo sapiens cDNA, FLJ98602.																		GCGAGTCGGAAGAGGTGGGAT	0.726000													3	10	---	---	---	---	0	0	0.014758	0	0
Unknown	0	broad.mit.edu	37	MT	3132	3132	+	5'Flank	SNP	G	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrM:3132G>A	uc004coq.3	-						uc004cos.3_RNA|uc011mfh.1_5'Flank					Homo sapiens cDNA: FLJ22857 fis, clone KAT01615.																		CTGTACGAAAGGACAAGAGAA	0.433000													349	75	---	---	---	---	0	0	0.048971	0	0
Unknown	0	broad.mit.edu	37	MT	14249	14249	+	RNA	SNP	G	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrM:14249G>A	uc004cox.3	+	1		c.1913G>A			uc004coy.2_5'Flank|uc004coz.1_5'Flank					Homo sapiens NADH dehydrogenase subunit 5 (MTND5) mRNA, RNA 5, complete cds; mitochondrial gene for mitochondrial product.																		ACAAAGCCCCCGCACCAATAG	0.428000													19	457	---	---	---	---	0	0	0.024334	0	0
Unknown	0	broad.mit.edu	37	MT	15170	15170	+	Missense_Mutation	SNP	G	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrM:15170G>A	uc004coy.2	+	1	410	c.335G>A	c.(334-336)AGG>AAG	p.R112K	uc004coz.1_5'Flank					Homo sapiens clone 35w unknown mRNA; mitochondrial.																		TATCATTCTGAGGGGCCACAG	0.473000											OREG0007583	type=REGULATORY REGION|TFbs=ESR1|Dataset=Estrogen Receptor Alpha Binding Sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	100	620	---	---	---	---	0	0	0.048971	0	0
PHKA2	5256	broad.mit.edu	37	X	18969292	18969292	+	Missense_Mutation	SNP	G	T	T			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:18969292G>T	uc004cyv.3	-	4	814	c.384C>A	c.(382-384)GAC>GAA	p.D128E	PHKA2_uc010nfh.1_Intron|PHKA2_uc010nfi.1_Missense_Mutation_p.D70E	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	128					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					GGCCCCACTGGTCGTCGCCCA	0.607000													5	83	---	---	---	---	0.00116845	0.00128932	0.021553	1	0
KDM6A	7403	broad.mit.edu	37	X	44929202	44929202	+	Missense_Mutation	SNP	A	G	G			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:44929202A>G	uc004dge.3	+	17	2677	c.2302A>G	c.(2302-2304)AAG>GAG	p.K768E	KDM6A_uc010nhk.2_Missense_Mutation_p.K734E|KDM6A_uc011mkz.1_Missense_Mutation_p.K820E|KDM6A_uc011mla.1_Missense_Mutation_p.K723E|KDM6A_uc011mlb.1_Missense_Mutation_p.K775E|KDM6A_uc011mlc.1_Missense_Mutation_p.K472E|KDM6A_uc011mld.1_Missense_Mutation_p.K407E	NM_021140	NP_066963	O15550	KDM6A_HUMAN	ubiquitously transcribed tetratricopeptide	768					histone H3-K4 methylation		metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			kidney(24)|haematopoietic_and_lymphoid_tissue(23)|oesophagus(11)|large_intestine(7)|lung(5)|breast(4)|central_nervous_system(3)|urinary_tract(3)|endometrium(2)|pancreas(2)	84						TGGAGATTCTAAGTCACCAGG	0.473000			D|N|F|S		renal|oesophageal SCC|MM								26	21	---	---	---	---	0	0	0.045705	0	0
FOXR2	139628	broad.mit.edu	37	X	55650462	55650462	+	Silent	SNP	C	T	T			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:55650462C>T	uc004duo.2	+	1	630	c.318C>T	c.(316-318)AAC>AAT	p.N106N		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	106					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						ATCTGACAAACATTTCTCCTT	0.542000													9	13	---	---	---	---	0	0	0.047766	0	0
ACRC	93953	broad.mit.edu	37	X	70823916	70823916	+	Missense_Mutation	SNP	A	T	T			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:70823916A>T	uc004eae.2	+	8	1290	c.789A>T	c.(787-789)GAA>GAT	p.E263D	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	263	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					ATGATTCGGAAGCTCCCGACG	0.552000													5	79	---	---	---	---	0	0	0.029380	0	0
ACRC	93953	broad.mit.edu	37	X	70823918	70823918	+	Missense_Mutation	SNP	C	T	T			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:70823918C>T	uc004eae.2	+	8	1292	c.791C>T	c.(790-792)GCT>GTT	p.A264V	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	264	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					GATTCGGAAGCTCCCGACGAC	0.557000													5	74	---	---	---	---	0	0	0.029380	0	0
Unknown	0	broad.mit.edu	37	1	10231	10231	+	5'Flank	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:10231delC	uc001aaa.3	+						uc010nxq.1_5'Flank|uc010nxr.1_5'Flank					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		ctaaccctaacccctaaccct	0.000													3	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	2586371	2586371	+	IGR	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:2586371delC								MMEL1 (21890 upstream) : ACTRT2 (351675 downstream)																							AGCACCCACACCAACAGGTGA	0.597													7	89	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	37772032	37772033	+	IGR	DEL	GA	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:37772032_37772033delGA								GRIK3 (272188 upstream) : ZC3H12A (168086 downstream)																							GGCCCAGAGTGAGAGAGAGGAG	0.480													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	121357969	121357969	+	IGR	DEL	G	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:121357969delG								LOC647121 (44283 upstream) : None (None downstream)																							tccacttgcaggtcctccaac	0.000													10	212	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	142537614	142537618	+	IGR	DEL	AGTGG	-	-	rs143790687		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:142537614_142537618delAGTGG								None (None upstream) : None (None downstream)																							aatggagtgaagtggagtggagtgg	0.010													11	54	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	143534375	143534376	+	IGR	INS	-	C	C	rs151315332		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:143534375_143534376insC								None (None upstream) : LOC100286793 (113263 downstream)																							ggagatagcatagatcccaaaa	0.000													4	7	---	---	---	---					
CYB5R1	51706	broad.mit.edu	37	1	202936455	202936455	+	5'Flank	DEL	G	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr1:202936455delG	uc001gyt.2	-						CYB5R1_uc010pqe.1_5'Flank	NM_016243	NP_057327	Q9UHQ9	NB5R1_HUMAN	cytochrome b5 reductase 1						sterol biosynthetic process	integral to membrane	cytochrome-b5 reductase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.141)			cctcgcggctgggggggcagg	0.104													4	7	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42383634	42383635	+	IGR	INS	-	ATC	ATC			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr10:42383634_42383635insATC								None (None upstream) : LOC441666 (443680 downstream)																							cattgaatggaatcgaatggaa	0.000													7	357	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42383715	42383716	+	IGR	INS	-	G	G	rs145968937		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr10:42383715_42383716insG								None (None upstream) : LOC441666 (443599 downstream)																							atggaatcaaaataaccatcat	0.000													8	445	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	72665150	72665150	+	IGR	DEL	T	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr10:72665150delT								PCBD1 (16609 upstream) : UNC5B (307148 downstream)																							CAAGCACGTCTTCCTCTCCAG	0.612													4	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	85011511	85011513	+	IGR	DEL	GGA	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr10:85011511_85011513delGGA								NRG3 (264576 upstream) : GHITM (887672 downstream)																							gagggaggagggaggaggaggag	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	94985788	94985789	+	IGR	INS	-	T	T	rs140557797	by1000genomes	TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr10:94985788_94985789insT								CYP26A1 (148147 upstream) : MYOF (80398 downstream)																							cccagagggagtgttacagtgc	0.000													3	4	---	---	---	---					
BLNK	29760	broad.mit.edu	37	10	98032161	98032161	+	5'Flank	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr10:98032161delC	uc001kls.3	-						BLNK_uc001kme.3_5'Flank|BLNK_uc001klt.3_5'Flank|BLNK_uc009xvc.2_5'Flank|BLNK_uc001klu.3_5'Flank|BLNK_uc001klv.3_5'Flank|BLNK_uc001klw.3_5'Flank|BLNK_uc001klx.3_5'Flank|BLNK_uc001kly.3_5'Flank|BLNK_uc001klz.3_5'Flank|BLNK_uc001kma.3_5'Flank|BLNK_uc001kmb.3_5'Flank|BLNK_uc001kmc.3_5'Flank|BLNK_uc001kmd.3_5'Flank|BLNK_uc009xvd.2_5'Flank	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1						B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		ACGCCAGACACGAGGCCATCT	0.537													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	131962224	131962225	+	IGR	INS	-	ATA	ATA	rs67902503		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr12:131962224_131962225insATA								LOC116437 (264749 upstream) : SFRS8 (233410 downstream)																							tggtaatggtggtgatgatggt	0.005													6	10	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	48336967	48336968	+	IGR	INS	-	C	C	rs145871240	by1000genomes	TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr13:48336967_48336968insC								HTR2A (865917 upstream) : SUCLA2 (179824 downstream)																							ACACTGGCTGACCAAGTAAAAT	0.426													5	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	14	105400404	105400404	+	IGR	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr14:105400404delC								PLD4 (831 upstream) : AHNAK2 (3187 downstream)																							cgggaggcgacccggggctga	0.244													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	22490720	22490721	+	IGR	DEL	AA	-	-	rs55759728	by1000genomes	TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr15:22490720_22490721delAA								OR4N3P (76335 upstream) : MIR1268 (22508 downstream)																							TGAGTCACACAACGAGCTCACT	0.485													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	30241724	30241725	+	IGR	INS	-	CTT	CTT			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr15:30241724_30241725insCTT								TJP1 (127018 upstream) : FAM7A3 (154210 downstream)																							tccacctccaccaccaccacct	0.000													4	7	---	---	---	---					
CHD2	1106	broad.mit.edu	37	15	93552546	93552547	+	Frame_Shift_Ins	INS	-	G	G			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr15:93552546_93552547insG	uc002bsp.2	+	35	5160_5161	c.4585_4586insG	c.(4585-4587)TGGfs	p.W1529fs	CHD2_uc002bso.1_Frame_Shift_Ins_p.W1529fs	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1529					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			CATCAAACTCTGGAGGAGGTAA	0.495													19	40	---	---	---	---					
SOLH	6650	broad.mit.edu	37	16	597239	597241	+	In_Frame_Del	DEL	AGG	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:597239_597241delAGG	uc002chi.2	+	4	764_766	c.401_403delAGG	c.(400-405)CAGGAG>CAG	p.E138del	SOLH_uc002chh.1_In_Frame_Del_p.E138del	NM_005632	NP_005623	O75808	CAN15_HUMAN	small optic lobes	138	Glu-rich.				proteolysis	intracellular	calcium-dependent cysteine-type endopeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)	2		Hepatocellular(780;0.00335)				aaggaggagcaggaggaggagga	0.571													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	27150431	27150431	+	IGR	DEL	T	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:27150431delT								C16orf82 (69945 upstream) : JMJD5 (64376 downstream)																							gtggtggtggtggtggtggtg	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46391542	46391542	+	IGR	DEL	C	-	-	rs111846833		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:46391542delC								None (None upstream) : ANKRD26P1 (111707 downstream)																							TTAATGATTGCTTTGTTttca	0.045													8	686	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46392982	46393030	+	IGR	DEL	GATGATTCCATTAGATTCCATTTGATGATTCCATTCGATTCCATGCGAC	-	-	rs139440462		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:46392982_46393030delGATGATTCCATTAGATTCCATTTGATGATTCCATTCGATTCCATGCGAC								None (None upstream) : ANKRD26P1 (110219 downstream)																							tccatttgatgatgattccattagattccatttgatgattccattcgattccatgcgacgatgattcca	0.000													19	249	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46401355	46401355	+	IGR	DEL	T	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:46401355delT								None (None upstream) : ANKRD26P1 (101894 downstream)																							gatgattctattttattcaat	0.000													10	317	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46405144	46405144	+	IGR	DEL	T	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:46405144delT								None (None upstream) : ANKRD26P1 (98105 downstream)																							tccgagtccattcgatgattc	0.000													17	1677	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46407697	46407698	+	IGR	INS	-	A	A	rs9922714		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:46407697_46407698insA								None (None upstream) : ANKRD26P1 (95551 downstream)																							tcccattcgagtccattcagtg	0.000													18	1851	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	46429330	46429330	+	IGR	DEL	A	-	-	rs140295046		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr16:46429330delA								None (None upstream) : ANKRD26P1 (73919 downstream)																							atctaatagcaacgaatggaa	0.025													7	173	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	18515832	18515832	+	IGR	DEL	G	-	-	rs111711714		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr18:18515832delG								None (None upstream) : ROCK1 (13873 downstream)																							cggtgcaaaaggaaatatctt	0.000													11	121	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27732663	27732663	+	IGR	DEL	T	-	-	rs77451260		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr19:27732663delT								None (None upstream) : LOC148189 (548739 downstream)																							ctgtttgtaatgtctgcaagt	0.000													7	463	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27738429	27738430	+	IGR	DEL	CT	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr19:27738429_27738430delCT								None (None upstream) : LOC148189 (542972 downstream)																							ttaggaaacactctgtttgtaa	0.000													7	671	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	12613936	12613938	+	IGR	DEL	CTC	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr20:12613936_12613938delCTC								BTBD3 (706694 upstream) : SPTLC3 (375689 downstream)																							cctctgccttctcctcctccccc	0.158													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	26113543	26113543	+	IGR	DEL	A	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr20:26113543delA								C20orf191 (18866 upstream) : MIR663 (75279 downstream)																							TCTTTGCCTTAACAACATTAT	0.363													2	4	---	---	---	---					
MC3R	4159	broad.mit.edu	37	20	54823640	54823641	+	5'Flank	DEL	CT	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr20:54823640_54823641delCT	uc002xxb.2	+							NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor						activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			GCTActctccctctctctctct	0.203													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10715466	10715466	+	IGR	DEL	A	-	-	rs145593257		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr21:10715466delA								None (None upstream) : TPTE (191277 downstream)																							tgcagatcctaaaaaaagact	0.000													9	21	---	---	---	---					
Unknown	0	broad.mit.edu	37	21	10792780	10792784	+	IGR	DEL	GAGAG	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr21:10792780_10792784delGAGAG								None (None upstream) : TPTE (113959 downstream)																							tggaatggaagagagtggaatggaa	0.000													2	4	---	---	---	---					
PANX2	56666	broad.mit.edu	37	22	50616616	50616617	+	Frame_Shift_Ins	INS	-	C	C			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr22:50616616_50616617insC	uc003bjn.3	+	2	1475_1476	c.1475_1476insC	c.(1474-1476)GGCfs	p.G492fs	PANX2_uc003bjp.3_Frame_Shift_Ins_p.G358fs|PANX2_uc003bjo.3_Frame_Shift_Ins_p.G492fs	NM_052839	NP_443071	Q96RD6	PANX2_HUMAN	pannexin 2 isoform 1	492	Cytoplasmic (Potential).				protein hexamerization|synaptic transmission	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity			breast(1)	1		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		GGCGACCCGGGccccggccccg	0.554													4	3	---	---	---	---					
NFXL1	152518	broad.mit.edu	37	4	47916171	47916171	+	Frame_Shift_Del	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:47916171delC	uc010igh.2	-	2	227	c.50delG	c.(49-51)GGAfs	p.G17fs	uc003gxr.1_5'Flank|NFXL1_uc003gxp.2_Frame_Shift_Del_p.G17fs|NFXL1_uc003gxq.3_RNA|NFXL1_uc010igi.2_Frame_Shift_Del_p.G17fs	NM_152995	NP_694540	Q6ZNB6	NFXL1_HUMAN	nuclear transcription factor, X-box binding-like	17						integral to membrane|nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						AGTGGCCCGTCCCCGGGATCG	0.647													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49095061	49095061	+	IGR	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:49095061delC								CWH43 (30968 upstream) : None (None downstream)																							ctgttccattccgttccattg	0.000													11	99	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49100775	49100775	+	IGR	DEL	A	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:49100775delA								CWH43 (36682 upstream) : None (None downstream)																							attccattccattccattcgg	0.000													7	66	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49112046	49112046	+	IGR	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:49112046delC								CWH43 (47953 upstream) : None (None downstream)																							ccattccgttcctttccattt	0.000													7	203	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49122298	49122298	+	IGR	DEL	T	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:49122298delT								CWH43 (58205 upstream) : None (None downstream)																							caatctattctttccattcca	0.000													19	124	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49123036	49123036	+	IGR	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:49123036delC								CWH43 (58943 upstream) : None (None downstream)																							tcaatctattccattccattt	0.000													8	380	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49149390	49149390	+	IGR	DEL	A	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:49149390delA								CWH43 (85297 upstream) : None (None downstream)																							attcgggttgattccattcca	0.000													7	399	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49645179	49645180	+	IGR	INS	-	G	G			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:49645179_49645180insG								CWH43 (581086 upstream) : None (None downstream)																							tggaatcatccgagtggaatgg	0.000													12	18	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	78885209	78885209	+	IGR	DEL	C	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr4:78885209delC								MRPL1 (11265 upstream) : FRAS1 (93515 downstream)																							GTCAGCTCCTCAGAGTTTTCT	0.438													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	165809676	165809676	+	IGR	DEL	A	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr5:165809676delA								None (None upstream) : ODZ2 (902167 downstream)																							TTACTTCTTTAAAAAAAAAAA	0.353													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	58778380	58778380	+	IGR	DEL	T	-	-	rs4394248		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr6:58778380delT								GUSBL2 (490656 upstream) : None (None downstream)																							ggaaacactctttttgtagaa	0.000													7	813	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	571427	571428	+	IGR	INS	-	ACAG	ACAG			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr7:571427_571428insACAG								PDGFA (11946 upstream) : PRKAR1B (17959 downstream)																							CGGAGGGTGAAACAGAGAGGAG	0.228													2	4	---	---	---	---					
SP4	6671	broad.mit.edu	37	7	21468304	21468306	+	In_Frame_Del	DEL	AGG	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr7:21468304_21468306delAGG	uc003sva.2	+	2	198_200	c.17_19delAGG	c.(16-21)AAGGAG>AAG	p.E11del	SP4_uc003svb.2_5'UTR	NM_003112	NP_003103	Q02446	SP4_HUMAN	Sp4 transcription factor	11	Poly-Glu.				regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(3)|skin(2)	5						GATCAGAAGAAGGAGGAGGAGGA	0.517													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	43095195	43095195	+	IGR	DEL	A	-	-	rs62515701		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr8:43095195delA								HGSNAT (37226 upstream) : POTEA (52390 downstream)																							atcaaagtacaccaaatacat	0.000													7	106	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	31645187	31645188	+	IGR	INS	-	A	A			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr9:31645187_31645188insA								None (None upstream) : ACO1 (739413 downstream)																							TAGTCTCTATTAAAAAAAAAAA	0.233													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	9	68424476	68424476	+	IGR	DEL	A	-	-	rs141661264		TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chr9:68424476delA								FAM27B (630287 upstream) : MIR1299 (577763 downstream)																							TCATCACGGGAATCTTGTACA	0.338													7	22	---	---	---	---					
Unknown	0	broad.mit.edu	37	M	7090	7090	+	Frame_Shift_Del	DEL	G	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrM:7090delG	uc011mfh.1	+	1	1237	c.189delG	c.(187-189)CTGfs	p.L63fs	uc004cou.3_5'Flank|uc011mfi.1_5'Flank					Homo sapiens cDNA: FLJ22894 fis, clone KAT04907.																		CTTCATTCACTGATTTCCCCT	0.428													9	481	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	8434808	8434809	+	IGR	INS	-	G	G			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:8434808_8434809insG								VCX3B (258 upstream) : KAL1 (62107 downstream)																							ggagggagggaggaagaggagg	0.000													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	35077921	35077922	+	IGR	INS	-	T	T			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:35077921_35077922insT								FAM47B (114887 upstream) : MAGEB16 (738537 downstream)																							GATTGCTGGAGTTTTTTTTTTA	0.490													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	142838664	142838665	+	IGR	DEL	GT	-	-			TCGA-E3-A3E3-01A-11D-A20C-08	TCGA-E3-A3E3-10A-01D-A20C-08									Somatic	Phase_I	Capture				Illumina GAIIx	42777e66-8bee-408a-b462-e72f09904209	0e05f7f5-f01b-479b-9dde-821a7ed463dd	g.chrX:142838664_142838665delGT								SPANXN2 (34148 upstream) : UBE2NL (128508 downstream)																							TCAAGTAGGAgtgtgtgtgtgt	0.272													2	4	---	---	---	---					
