Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CROCCL1	84809	broad.mit.edu	37	1	16972090	16972090	+	5'Flank	SNP	G	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr1:16972090G>A	uc001azg.1	-						CROCCL1_uc001azi.1_5'Flank|uc001azj.1_5'Flank|MST1P2_uc009vow.2_RNA|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_RNA|MST1P2_uc010oci.1_5'Flank|MST1P2_uc001azk.2_5'Flank|MST1P2_uc001azl.3_5'Flank|MST1P2_uc009vox.2_5'Flank|MST1P2_uc001azm.3_5'Flank					Homo sapiens mRNA for FLJ00313 protein.												0						ATGGGGCTGTGGTGGGTCACA	0.627000													6	22	---	---	---	---	0	0	1	0	0
HIST2H2AC	8338	broad.mit.edu	37	1	149858724	149858724	+	Missense_Mutation	SNP	C	T	T	rs142055068		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr1:149858724C>T	uc001etd.2	+	1	200	c.200C>T	c.(199-201)GCG>GTG	p.A67V	HIST2H2BE_uc001etc.2_5'Flank	NM_003517	NP_003508	Q16777	H2A2C_HUMAN	histone cluster 2, H2ac	67					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)|skin(1)	2	Breast(34;0.0124)|all_hematologic(923;0.127)		STAD - Stomach adenocarcinoma(528;0.133)|LUSC - Lung squamous cell carcinoma(543;0.221)			CTGGAGCTGGCGGGCAACGCG	0.657000													4	61	---	---	---	---	0	0	1	0	0
GOLGA5	9950	broad.mit.edu	37	14	93303788	93303788	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr14:93303788A>G	uc001yaz.1	+	12	2291	c.2109A>G	c.(2107-2109)ATA>ATG	p.I703M	GOLGA5_uc001yba.1_Intron	NM_005113	NP_005104	Q8TBA6	GOGA5_HUMAN	Golgi autoantigen, golgin subfamily a, 5	703	Helical; Anchor for type IV membrane protein; (Potential).				Golgi organization	cis-Golgi network|integral to membrane	ATP binding|protein homodimerization activity|protein tyrosine kinase activity|Rab GTPase binding			ovary(2)|lung(1)	3		all_cancers(154;0.0934)		COAD - Colon adenocarcinoma(157;0.222)		TTGTAATTATATATATGGTAA	0.328000			T	RET	papillary thyroid								11	155	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	15	20193165	20193165	+	RNA	SNP	C	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr15:20193165C>A	uc010tyv.1	-	2		c.105G>T								Homo sapiens immunoglobulin heavy chain leader and variable region mRNA, partial cds.																		CTCAGAGAACCCCCAGGCTGG	0.572000													8	72	---	---	---	---	7.48243e-07	8.76513e-07	1	1	0
SLC28A2	9153	broad.mit.edu	37	15	45545719	45545719	+	Splice_Site	SNP	G	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr15:45545719G>C	uc001zva.2	+	3	235	c.170_splice	c.e3+1	p.R57_splice		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled						nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		CTTACCAGAGGTACTGGTGTT	0.522000													3	17	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	16	32070612	32070612	+	RNA	SNP	A	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr16:32070612A>C	uc002ecv.1	+	1		c.65A>C								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:TRH1-22.																		GGTCTCCTGCAAGGCTTCTGG	0.552000													3	88	---	---	---	---	0	0	1	0	0
CNGB1	1258	broad.mit.edu	37	16	57938657	57938657	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr16:57938657A>G	uc002emt.2	-	26	2680	c.2615T>C	c.(2614-2616)TTC>TCC	p.F872S	CNGB1_uc010cdh.2_Missense_Mutation_p.F866S	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	872	Helical; Name=H5; (Potential).				sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						CATCACAGAGAAAGCAAAGAC	0.567000													7	158	---	---	---	---	0	0	1	0	0
MYO15A	51168	broad.mit.edu	37	17	18022790	18022790	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr17:18022790C>T	uc010vxh.1	+	2	1014	c.676C>T	c.(676-678)CTT>TTT	p.L226F		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	226	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					GCTGTACGGGCTTGAGGGCTT	0.642000													5	65	---	---	---	---	0	0	1	0	0
NF1	4763	broad.mit.edu	37	17	29588854	29588854	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr17:29588854A>G	uc002hgg.2	+	35	5036	c.4703A>G	c.(4702-4704)AAG>AGG	p.K1568R	NF1_uc002hgh.2_Missense_Mutation_p.K1547R|NF1_uc002hgi.1_Missense_Mutation_p.K580R	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1568					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(3)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ACCAGTTCAAAGTTTGAGGAA	0.428000			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			4	55	---	---	---	---	0	0	1	0	0
LRRC30	339291	broad.mit.edu	37	18	7231664	7231664	+	Silent	SNP	G	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr18:7231664G>A	uc010wzk.1	+	1	528	c.528G>A	c.(526-528)GCG>GCA	p.A176A		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	176	LRR 5.									ovary(1)|liver(1)	2						ACTTCTTCGCGCACATCCCCA	0.552000													8	133	---	---	---	---	0	0	1	0	0
CEP192	55125	broad.mit.edu	37	18	13042296	13042296	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr18:13042296A>G	uc010xac.1	+	15	2110	c.2030A>G	c.(2029-2031)AAT>AGT	p.N677S	CEP192_uc010dlf.1_Intron|CEP192_uc010xad.1_Missense_Mutation_p.N202S|CEP192_uc002kru.2_RNA|CEP192_uc002krs.1_Missense_Mutation_p.N418S	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	677										ovary(4)|pancreas(1)	5						GTGGATGAAAATGATGTGACG	0.403000													5	67	---	---	---	---	0	0	1	0	0
SAMD1	90378	broad.mit.edu	37	19	14199324	14199324	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:14199324G>A	uc010xnl.1	-	7	1522	c.1522C>T	c.(1522-1524)CGC>TGC	p.R508C		NM_138352	NP_612361	Q6SPF0	SAMD1_HUMAN	sterile alpha motif domain containing 1	508	SAM.					cytoplasm|extracellular region					0		Renal(1328;0.00183)|Hepatocellular(1079;0.00826)		GBM - Glioblastoma multiforme(1328;0.000411)|STAD - Stomach adenocarcinoma(1328;0.00644)|Lung(535;0.199)		GGCCCGAGGCGGATGGACAGG	0.577000													3	35	---	---	---	---	0	0	1	0	0
RYR1	6261	broad.mit.edu	37	19	38976750	38976750	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:38976750G>A	uc002oit.2	+	34	5585	c.5455G>A	c.(5455-5457)GTG>ATG	p.V1819M	RYR1_uc002oiu.2_Missense_Mutation_p.V1819M	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1819	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GGGGGAGGCGGTGCGCGACGG	0.706000													4	123	---	---	---	---	0	0	1	0	0
ZNF780A	284323	broad.mit.edu	37	19	40580552	40580552	+	Missense_Mutation	SNP	T	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:40580552T>G	uc002omy.2	-	6	2022	c.1797A>C	c.(1795-1797)CAA>CAC	p.Q599H	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.Q599H|ZNF780A_uc010xvh.1_Missense_Mutation_p.Q600H	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	599	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					GTCGAATAAGTTGCATATGAA	0.403000													5	117	---	---	---	---	0	0	1	0	0
ZNF649	65251	broad.mit.edu	37	19	52394736	52394736	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:52394736T>C	uc002pxy.2	-	5	921	c.653A>G	c.(652-654)AAG>AGG	p.K218R	ZNF577_uc010ydf.1_5'Flank	NM_023074	NP_075562	Q9BS31	ZN649_HUMAN	zinc finger protein 649	218	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_neural(266;0.0602)		GBM - Glioblastoma multiforme(134;0.00152)|OV - Ovarian serous cystadenocarcinoma(262;0.0185)		GAGCCTGTACTTCTTGTAGAA	0.483000													3	92	---	---	---	---	0	0	1	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418000													4	164	---	---	---	---	0	0	1	0	0
BRSK1	84446	broad.mit.edu	37	19	55798597	55798597	+	Missense_Mutation	SNP	G	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:55798597G>A	uc002qkg.2	+	3	524	c.247G>A	c.(247-249)GCC>ACC	p.A83T	BRSK1_uc002qkf.2_Missense_Mutation_p.A99T	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	83	Protein kinase.				establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		GCGGGAGATCGCCATCCTGAA	0.607000													4	168	---	---	---	---	0	0	1	0	0
ZNF543	125919	broad.mit.edu	37	19	57835056	57835056	+	Missense_Mutation	SNP	G	T	T			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:57835056G>T	uc002qoi.1	+	2	370	c.25G>T	c.(25-27)GTG>TTG	p.V9L		NM_213598	NP_998763	Q08ER8	ZN543_HUMAN	zinc finger protein 543	9	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)|pancreas(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CCAGGTGTCTGTGACCTTTGA	0.488000													4	154	---	---	---	---	1.23904e-05	1.37299e-05	1	1	0
TTN	7273	broad.mit.edu	37	2	179611917	179611917	+	Silent	SNP	T	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr2:179611917T>C	uc002unb.2	-	46	15434	c.15210A>G	c.(15208-15210)CTA>CTG	p.L5070L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTATCTCTCTAGAGTCTCTC	0.522000													3	94	---	---	---	---	0	0	1	0	0
IRAK2	3656	broad.mit.edu	37	3	10258686	10258686	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr3:10258686A>G	uc003bve.1	+	7	933	c.857A>G	c.(856-858)TAC>TGC	p.Y286C		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	286	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						AGCTTCATCTACCCCTACATG	0.567000													4	141	---	---	---	---	0	0	1	0	0
SLC6A20	54716	broad.mit.edu	37	3	45812903	45812903	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr3:45812903C>A	uc011bai.1	-	6	865	c.741G>T	c.(739-741)CAG>CAT	p.Q247H	SLC6A20_uc003cow.2_5'UTR|SLC6A20_uc011baj.1_Missense_Mutation_p.Q210H	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	247	Helical; Name=6; (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		AGAAGAAGATCTGGGTGGCTG	0.587000													4	62	---	---	---	---	0.00024832	0.000267924	1	1	0
TDO2	6999	broad.mit.edu	37	4	156828925	156828925	+	Missense_Mutation	SNP	A	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:156828925A>C	uc003ipf.1	+	4	348	c.284A>C	c.(283-285)GAG>GCG	p.E95A		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	95					tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	TCTGTTCGAGAGATCTTTCAG	0.338000													3	73	---	---	---	---	0	0	1	0	0
TRIML1	339976	broad.mit.edu	37	4	189068456	189068456	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:189068456C>A	uc003izm.1	+	6	1452	c.1337C>A	c.(1336-1338)TCC>TAC	p.S446Y	TRIML1_uc003izn.1_Missense_Mutation_p.S170Y	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	446	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CCTATCTTTTCCCCCTGCCTC	0.562000													9	94	---	---	---	---	0.000978159	0.00102832	1	1	0
GMDS	2762	broad.mit.edu	37	6	2117711	2117711	+	Missense_Mutation	SNP	A	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr6:2117711A>G	uc003mtq.2	-	3	417	c.227T>C	c.(226-228)ATT>ACT	p.I76T		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	76					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		ACTTCCTTCAATGTGAGCCTG	0.373000													6	68	---	---	---	---	0	0	1	0	0
UNC93A	54346	broad.mit.edu	37	6	167728844	167728844	+	Silent	SNP	G	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr6:167728844G>A	uc003qvq.2	+	8	1453	c.1278G>A	c.(1276-1278)GGG>GGA	p.G426G	UNC93A_uc003qvr.2_Silent_p.G384G	NM_018974	NP_061847	Q86WB7	UN93A_HUMAN	unc-93 homolog A isoform 1	426						integral to membrane|plasma membrane					0		Breast(66;7.62e-05)|Ovarian(120;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TGGCGTATGGGCTTGTGGAGT	0.542000													14	304	---	---	---	---	0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				44	37	---	---	---	---	0	0	1	0	0
EPB49	2039	broad.mit.edu	37	8	21924655	21924655	+	Silent	SNP	T	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr8:21924655T>G	uc011kyt.1	+	3	307	c.78T>G	c.(76-78)TCT>TCG	p.S26S	EPB49_uc010ltl.2_Silent_p.S26S|EPB49_uc011kys.1_Intron|EPB49_uc010ltn.2_Intron|EPB49_uc011kyu.1_Silent_p.S26S|EPB49_uc011kyv.1_Silent_p.S26S|EPB49_uc010ltq.2_Silent_p.S26S	NM_001114136	NP_001107608	Q08495	DEMA_HUMAN	erythrocyte membrane protein band 4.9 isoform 1	26					actin filament bundle assembly|actin filament capping	actin cytoskeleton|nucleus	actin binding			central_nervous_system(1)	1				Colorectal(74;9.05e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0631)		TGCCTGGCTCTCCCTCCAGCA	0.697000													3	89	---	---	---	---	0	0	1	0	0
FAM83H	286077	broad.mit.edu	37	8	144811136	144811136	+	Splice_Site	SNP	C	T	T			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr8:144811136C>T	uc003yzk.2	-	4	806	c.737_splice	c.e4+1	p.S246_splice	FAM83H_uc010mfk.1_5'Flank	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H						biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CGCGGGCGCACCTGTAGCTCC	0.657000													4	147	---	---	---	---	0	0	1	0	0
KIF27	55582	broad.mit.edu	37	9	86474101	86474101	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr9:86474101T>A	uc004ana.2	-	14	3264	c.3120A>T	c.(3118-3120)AAA>AAT	p.K1040N	KIF27_uc010mpw.2_Missense_Mutation_p.K974N|KIF27_uc010mpx.2_Missense_Mutation_p.K943N	NM_017576	NP_060046	Q86VH2	KIF27_HUMAN	kinesin family member 27	1040	Potential.				cilium assembly|microtubule-based movement	cilium|cytoplasm|microtubule	ATP binding|microtubule motor activity			lung(4)|skin(1)	5						CATTTTTAAGTTTTTCATCCA	0.398000													4	71	---	---	---	---	0	0	1	0	0
OR1N2	138882	broad.mit.edu	37	9	125316381	125316381	+	Missense_Mutation	SNP	C	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr9:125316381C>A	uc011lyx.1	+	1	933	c.933C>A	c.(931-933)AAC>AAA	p.N311K		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4						GCTTGAGGAACAGAGACATGA	0.403000													4	54	---	---	---	---	0.00909568	0.00909568	1	1	0
Unknown	0	broad.mit.edu	37	MT	7847	7847	+	RNA	SNP	G	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrM:7847G>A	uc004cou.3	+	1		c.262G>A			uc011mfi.1_5'Flank|uc004cov.3_5'Flank					Homo sapiens mRNA expressed only in placental villi, clone SMAP42.																		TTTACATAACAGACGAGGTCA	0.502000													6	109	---	---	---	---	0	0	1	0	0
ARSF	416	broad.mit.edu	37	X	3002560	3002560	+	Missense_Mutation	SNP	T	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrX:3002560T>A	uc004cre.1	+	6	904	c.683T>A	c.(682-684)CTC>CAC	p.L228H	ARSF_uc004crf.1_Missense_Mutation_p.L228H	NM_004042	NP_004033	P54793	ARSF_HUMAN	arylsulfatase F precursor	228						extracellular region	arylsulfatase activity|metal ion binding			ovary(2)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				TTTATTTTCCTCTTGGGCTAT	0.547000													9	90	---	---	---	---	0	0	1	0	0
ATRX	546	broad.mit.edu	37	X	76939853	76939853	+	Missense_Mutation	SNP	T	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrX:76939853T>C	uc004ecp.3	-	9	1127	c.895A>G	c.(895-897)AAA>GAA	p.K299E	ATRX_uc004ecq.3_Missense_Mutation_p.K261E|ATRX_uc004eco.3_Missense_Mutation_p.K84E|ATRX_uc004ecr.2_Missense_Mutation_p.K260E|ATRX_uc010nlx.1_Missense_Mutation_p.K299E|ATRX_uc010nly.1_Missense_Mutation_p.K244E	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	299					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CTGTCAACTTTTATCTTCTTC	0.338000			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						6	59	---	---	---	---	0	0	1	0	0
Unknown	0	broad.mit.edu	37	X	155254706	155254706	+	Missense_Mutation	SNP	C	T	T			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrX:155254706C>T	uc004fnx.3	+	8	1056	c.602C>T	c.(601-603)ACG>ATG	p.T201M		NM_182905	NP_878908			WAS protein family homolog 1																		GTGAGAGCCACGAGCCAAGGT	0.637000													7	5	---	---	---	---	0	0	1	0	0
C1QA	712	broad.mit.edu	37	1	22965379	22965379	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr1:22965379delC	uc001bfy.2	+	3	302	c.217delC	c.(217-219)CCTfs	p.P73fs	C1QA_uc001bfz.2_Frame_Shift_Del_p.P73fs	NM_015991	NP_057075	P02745	C1QA_HUMAN	complement component 1, q subcomponent, A chain	73	Collagen-like.				cell-cell signaling|complement activation, classical pathway|innate immune response	collagen|complement component C1 complex					0		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;6.41e-27)|Colorectal(126;1.52e-07)|COAD - Colon adenocarcinoma(152;1.12e-05)|GBM - Glioblastoma multiforme(114;1.63e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000541)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.197)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CCAGGGGGAACCTGGGCCCTC	0.647													2	4	---	---	---	---					
RPTN	126638	broad.mit.edu	37	1	152128169	152128172	+	Frame_Shift_Del	DEL	TGTC	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr1:152128169_152128172delTGTC	uc001ezs.1	-	3	1468_1471	c.1403_1406delGACA	c.(1402-1407)AGACAAfs	p.R468fs		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	468_469	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACTCTGGCCTTGTCTGTCTGTCTG	0.500													8	1346	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42383712	42383713	+	IGR	INS	-	A	A	rs68020006		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr10:42383712_42383713insA								None (None upstream) : LOC441666 (443602 downstream)																							caaatggaatcaaaataaccat	0.000													8	84	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr10:42385707_42385722delAATGGAATCATCATTA								None (None upstream) : LOC441666 (441593 downstream)																							aatggaatcgaatggaatcatcattaaatggaatca	0.042													11	129	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42392726	42392748	+	IGR	DEL	AATCGAATGGAATTATCGAATGC	-	-	rs67625628		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr10:42392726_42392748delAATCGAATGGAATTATCGAATGC								None (None upstream) : LOC441666 (434567 downstream)																							cctcaaatggaatcgaatggaattatcgaatgcaatcgaatgg	0.000													17	2513	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42396107	42396109	+	IGR	DEL	ATT	-	-	rs149779135		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr10:42396107_42396109delATT								None (None upstream) : LOC441666 (431206 downstream)																							tggaatcatcattgaatggaatc	0.000													12	1571	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42529430	42529430	+	IGR	DEL	T	-	-	rs71266253		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr10:42529430delT								None (None upstream) : LOC441666 (297885 downstream)																							gaagtccaaatatgcacttgc	0.000													9	480	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	42600053	42600053	+	IGR	DEL	T	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr10:42600053delT								None (None upstream) : LOC441666 (227262 downstream)																							ttgaacggaattgaatggaat	0.000													10	430	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	44812200	44812218	+	IGR	DEL	CCCTCCCACCACCCTCAGC	-	-	rs1746036	by1000genomes	TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr10:44812200_44812218delCCCTCCCACCACCCTCAGC								HNRNPA3P1 (526335 upstream) : CXCL12 (53389 downstream)																							cagccctgggccctcccaccaccctcagcccctcccacc	0.128													3	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	11	122311927	122311928	+	IGR	DEL	AG	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr11:122311927_122311928delAG								LOC399959 (73460 upstream) : UBASH3B (214470 downstream)																							acataGAGACAGAGAGAGAGAG	0.347													3	4	---	---	---	---					
FZD10	11211	broad.mit.edu	37	12	130647501	130647502	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr12:130647501_130647502insC	uc001uii.2	+	1	470_471	c.14_15insC	c.(13-15)GGCfs	p.G5fs	uc001uig.1_5'Flank|uc001uih.1_5'Flank	NM_007197	NP_009128	Q9ULW2	FZD10_HUMAN	frizzled 10 precursor	5					brain development|canonical Wnt receptor signaling pathway|cellular response to retinoic acid|embryo development|gonad development|negative regulation of Rho GTPase activity|neuron differentiation|non-canonical Wnt receptor signaling pathway|positive regulation of JUN kinase activity|positive regulation of Rac GTPase activity|regulation of actin cytoskeleton organization|vasculature development	cell projection|cell surface|cytoplasm|integral to plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(3)|breast(1)|central_nervous_system(1)	5	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.3e-06)|Epithelial(86;1.66e-05)|all cancers(50;5.18e-05)		CAGCGCCCGGGCCCCCGCCTGT	0.743													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	33528272	33528274	+	IGR	DEL	GCT	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr13:33528272_33528274delGCT								PDS5B (176117 upstream) : KL (61927 downstream)																							CGTATCTGCCGCTGCTGCTGCTG	0.522													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20481751	20481751	+	IGR	DEL	C	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr15:20481751delC								None (None upstream) : GOLGA6L6 (255343 downstream)																							ACAGATATTTCCCAACACTGC	0.348													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	15	20508652	20508653	+	IGR	INS	-	TGGCCC	TGGCCC	rs151093530	by1000genomes	TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr15:20508652_20508653insTGGCCC								None (None upstream) : GOLGA6L6 (228441 downstream)																							GGCCATGGCCATGgccctggcc	0.317													6	2	---	---	---	---					
Unknown	0	broad.mit.edu	37	16	6033866	6033868	+	IGR	DEL	TCC	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr16:6033866_6033868delTCC								FAM86A (886077 upstream) : A2BP1 (35264 downstream)																							cttccttctttcctcctcctcct	0.177													4	7	---	---	---	---					
CDC42EP4	23580	broad.mit.edu	37	17	71281585	71281587	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr17:71281585_71281587delTCC	uc002jjn.2	-	2	1200_1202	c.1053_1055delGGA	c.(1051-1056)GAGGAT>GAT	p.E351del	CDC42EP4_uc002jjo.2_In_Frame_Del_p.E351del|CDC42EP4_uc002jjp.1_In_Frame_Del_p.E281del	NM_012121	NP_036253	Q9H3Q1	BORG4_HUMAN	Cdc42 effector protein 4	351					positive regulation of pseudopodium assembly|regulation of cell shape	actin cytoskeleton|cytoplasm|endomembrane system|membrane|microtubule cytoskeleton	GTP-Rho binding				0			LUSC - Lung squamous cell carcinoma(166;0.0352)|Lung(188;0.0711)			ACGGATTTCATCCTCCTCCTCCT	0.640													7	220	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	76274577	76274578	+	IGR	INS	-	GG	GG	rs149970163	by1000genomes	TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr17:76274577_76274578insGG								LOC283999 (37510 upstream) : SOCS3 (78281 downstream)																							CAGTAACAAGCGGGGGTGGGGG	0.639													4	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	2478924	2478926	+	IGR	DEL	AGG	-	-	rs115902192	by1000genomes	TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr18:2478924_2478926delAGG								None (None upstream) : METTL4 (58599 downstream)																							aggaggaagaaggaggaggagga	0.094													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	47225170	47225172	+	IGR	DEL	CCT	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr18:47225170_47225172delCCT								LIPG (105894 upstream) : ACAA2 (84703 downstream)																							CCTGTCCTAAcctcctcctcctc	0.433													5	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	18	76095354	76095356	+	IGR	DEL	GGA	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr18:76095354_76095356delGGA								None (None upstream) : SALL3 (644919 downstream)																							ggggctacagggaggaggaggag	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	19	27733247	27733247	+	IGR	DEL	A	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr19:27733247delA								None (None upstream) : LOC148189 (548155 downstream)																							aactagacagaatcattctca	0.000													8	589	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	238822205	238822205	+	IGR	DEL	C	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr2:238822205delC								RAMP1 (1452 upstream) : UBE2F (53495 downstream)																							CCCCGACCTGCCCCCTGGGCC	0.642													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	20	622744	622745	+	IGR	INS	-	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr20:622744_622745insG								TCF15 (31834 upstream) : SRXN1 (4525 downstream)																							tggagttgcctggggggggccc	0.337													4	7	---	---	---	---					
ILDR1	286676	broad.mit.edu	37	3	121742636	121742638	+	5'Flank	DEL	CAG	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr3:121742636_121742638delCAG	uc003ees.2	-						ILDR1_uc003eer.2_5'Flank|ILDR1_uc010hrg.2_5'Flank	NM_175924	NP_787120	Q86SU0	ILDR1_HUMAN	immunoglobulin-like domain containing receptor							cytosol|integral to membrane|plasma membrane	receptor activity			skin(1)	1				GBM - Glioblastoma multiforme(114;0.156)		GATCCTagcacagcagcagcagc	0.429													3	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	3	195543844	195543844	+	IGR	DEL	C	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr3:195543844delC								MUC4 (4696 upstream) : TNK2 (46392 downstream)																							TCTCCTTACACAGATGCCACA	0.652													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	3607288	3607289	+	IGR	INS	-	C	C	rs141113002	by1000genomes	TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:3607288_3607289insC								LRPAP1 (73064 upstream) : ADRA2C (160786 downstream)																							CCTTTCAGCCACCCCCTCCCCC	0.644													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	3808836	3808837	+	IGR	DEL	CT	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:3808836_3808837delCT								ADRA2C (38585 upstream) : LOC348926 (134833 downstream)																							tccctcctccctctctctctct	0.020													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	8173462	8173463	+	IGR	DEL	GG	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:8173462_8173463delGG								ABLIM2 (12903 upstream) : SH3TC1 (27597 downstream)																							gagagagagagggagggaagga	0.267													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	24294825	24294825	+	IGR	DEL	C	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:24294825delC								PPARGC1A (403125 upstream) : MIR573 (226990 downstream)																							gctcctcctaccccttcaccc	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49120948	49120948	+	IGR	DEL	C	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:49120948delC								CWH43 (56855 upstream) : None (None downstream)																							ccattccattccagttgattc	0.000													7	86	---	---	---	---					
Unknown	0	broad.mit.edu	37	4	49323469	49323470	+	IGR	INS	-	CA	CA	rs79117116		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr4:49323469_49323470insCA								CWH43 (259376 upstream) : None (None downstream)																							acacacacacgcacacacacac	0.243													7	51	---	---	---	---					
Unknown	0	broad.mit.edu	37	5	61980006	61980008	+	IGR	DEL	GAG	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr5:61980006_61980008delGAG								IPO11 (55591 upstream) : ISCA1P1 (91194 downstream)																							GTATGGGAATgaggaggaggagg	0.320													4	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	34158924	34158925	+	IGR	INS	-	A	A			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr6:34158924_34158925insA								GRM4 (45055 upstream) : HMGA1 (45652 downstream)																							GGTCATTGTGGaaaaaaaaaaa	0.292													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	6	37721604	37721605	+	IGR	INS	-	G	G			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr6:37721604_37721605insG								MDGA1 (55838 upstream) : ZFAND3 (65702 downstream)																							caggggcgtgtggggggcctgg	0.158													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	35442	35443	+	IGR	INS	-	TGC	TGC			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr7:35442_35443insTGC								None (None upstream) : FAM20C (157526 downstream)																							GCAAATCCAGTtgctgctgctg	0.356													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	1235983	1235983	+	IGR	DEL	T	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr7:1235983delT								ZFAND2A (36128 upstream) : UNCX (36671 downstream)																							GAGGGGCGGGTGGGGGGACAC	0.662													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	65564792	65564792	+	IGR	DEL	A	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr7:65564792delA								ASL (6471 upstream) : CRCP (15013 downstream)																							gaggaggaggagcaggaggaA	0.373													2	4	---	---	---	---					
C7orf59	389541	broad.mit.edu	37	7	99746445	99746445	+	5'Flank	DEL	G	-	-	rs58185311		TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr7:99746445delG	uc003utq.2	+							NM_001008395	NP_001008396	Q0VGL1	CG059_HUMAN	hypothetical protein LOC389541												0						GTCTGACGACGTGGCCACTGT	0.622													7	5	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	138698235	138698236	+	IGR	DEL	TC	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chr7:138698235_138698236delTC								KIAA1549 (32171 upstream) : ZC3HAV1L (12216 downstream)																							acccatttcttctctctctctc	0.005													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	442743	442744	+	IGR	INS	-	C	C			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrX:442743_442744insC								PPP2R3B (95116 upstream) : SHOX (142335 downstream)																							aaggagatggaggaaggaagga	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	3954207	3954209	+	IGR	DEL	TCC	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrX:3954207_3954209delTCC								PRKX (322546 upstream) : None (None downstream)																							TCCTtcttcttcctcctcctcct	0.148													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	133407433	133407433	+	IGR	DEL	T	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrX:133407433delT								CCDC160 (27627 upstream) : PHF6 (99909 downstream)																							ATGAGGCTCCTTTTTTTTTTA	0.383													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-EL-A3GV-01A-11D-A21A-08	TCGA-EL-A3GV-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	0607b9ab-6780-4f97-8f16-01db4da45f1b	5ca70273-84f4-4fa2-ba3a-8aca89e0fe63	g.chrY:13483364delT								None (None upstream) : None (None downstream)																							tctgtcacaattcccctttag	0.000													18	104	---	---	---	---					
